Citrus Sinensis ID: 016612

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
Protein Sequence
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEEccccHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccccccHHHccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHcccccEEEEEEEccHHHHHHHHHHccEEEEEEccccHHHHcccccccccccccHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHccccccccccccccccccccccEcccccccccccccEcccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHcccccccEEEEEccccHHHHHHHHHcHHHHccEEEEEccccHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEccccccccccHHHHcccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHcccEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHcccccccccEEEEEcccHHHHHHHHHHccccEEcccccccccEEEccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msveeepgvSTLLMnfsnefdpygalstplyqtatfkqpsatengpydytrsgnptRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGtgeeivagddlyggtdrllsrvtpktGVVVKRVntcdldevasaigpwtklvwvesptnprqqiCDIRKIAEMAHAHGALLLvdnsimspvlsrplelgADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQnaegsglapfdcwiCLRGVKTMALRVEKQQDNAQKIAEFLAShprvkkvnyaglpehpghelhysqakgagSVLSFLTGSLALSKHVVETTKYFSITVSfgsvkslismpcfmshasipvEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Flexible Loop (DISEMBL)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRllsrvtpktgvvvkrvntcdldevasaigpwtklvwvesptnPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIsvgiedvndlisdldkalrtgpl
Low Complexity Region (SEG)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESllakldkadralCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Disordered region (IsUnstruct)
***********LLMNFSNEFDPYGALSTPLYQT*****************************LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ**NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD**********
Disordered Region (DISOPRED)
******P****LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG**
Disordered Region (DISEMBL)
*********STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Disordered Region (DISPRO)
*******GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	386	2.2.26 [Sep-21-2011]
P53780	464	Cystathionine beta-lyase,	yes	no	1.0	0.831	0.841	0.0
O94350	390	Cystathionine beta-lyase	yes	no	0.961	0.951	0.515	1e-103
O31632	390	Cystathionine beta-lyase	yes	no	0.930	0.920	0.473	1e-96
Q55DV9	387	Cystathionine gamma-lyase	yes	no	0.927	0.925	0.469	3e-96
A2RM21	380	Cystathionine beta-lyase	yes	no	0.927	0.942	0.466	8e-95
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.927	0.942	0.466	8e-95
O05394	379	Cystathionine gamma-lyase	no	no	0.930	0.947	0.459	1e-94
P0C2T9	380	Cystathionine beta-lyase	N/A	no	0.927	0.942	0.463	1e-92
Q1M0P5	380	Cystathionine gamma-synth	yes	no	0.927	0.942	0.452	3e-91
P56069	380	Cystathionine gamma-synth	yes	no	0.927	0.942	0.452	6e-91

>sp|P53780|METC_ARATH Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/386 (84%), Positives = 361/386 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378

Query: 301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438

Query: 361 VRISVGIEDVNDLISDLDKALRTGPL 386
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 8

>sp|O94350|CBL_SCHPO Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=str3 PE=3 SV=4

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/376 (51%), Positives = 259/376 (68%), Gaps = 5/376 (1%)

Query: 9   VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           V T L++     D Y A S P+YQ+ATFKQP     G +DYTRSGNPTR  L+  LAKL 
Sbjct: 9   VDTELVHVEGNEDQYHASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLM 68

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
           KA  A   ++GM+AL  +     +   +VAG DLYGG+DRLLS    + G  V  V+T D
Sbjct: 69  KAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSD 128

Query: 129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLSRP 186
           L    +A+ P T LV +ESPTNPR  ICDIR I ++  + A  ALL++DN+++SPVL  P
Sbjct: 129 LAAFEAALRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNP 188

Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
           L+ G DIV  SATK+++GH D+M GV+A K + +AK ++F  NA G+ +APF+C++ LRG
Sbjct: 189 LDFGYDIVYESATKYLSGHHDLMGGVIATKSDEIAKSVFFNINAMGAAMAPFECFLLLRG 248

Query: 247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL-PEHPGHELHYSQAKGAGSVLSFL 305
           +KTM LRVE+ Q NA +IA+FL S  +  +VN+ GL P+     + YS A+G G+V+S  
Sbjct: 249 IKTMGLRVERAQQNAIEIAKFLKS--KGLQVNFPGLDPDAKSTAIFYSFARGPGAVMSVF 306

Query: 306 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 365
           TG + +SK +V TTK F I+VSFG+V SLISMP +MSHASI  EVR ARGL+EDL+RI V
Sbjct: 307 TGDVEVSKTIVNTTKLFEISVSFGAVNSLISMPAYMSHASIKKEVRDARGLSEDLIRICV 366

Query: 366 GIEDVNDLISDLDKAL 381
           GIE+V+DL +DL+ AL
Sbjct: 367 GIENVDDLKADLENAL 382

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O31632|METC_BACSU Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1

 Score =  353 bits (906), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/359 (47%), Positives = 243/359 (67%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+   +TF Q S  E G YDY+RSG PTR ALE  +A L+   R   F+SGMAA+
Sbjct: 24  GAVSVPIQHASTFHQSSFEEFGAYDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAI 83

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
           +    LL  G+ ++  +D+YGGT R+++ V  + G+    V+  D +EVA +I P TK++
Sbjct: 84  STAFLLLSQGDHVLVTEDVYGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNTKVI 143

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP   I DI+ + ++A  +G L  +DN+ M+P L RPL+LG DIV+HSATKF++
Sbjct: 144 YMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLS 203

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV++G+ AVK E L K+LY LQNA G+ L   DCW+ LRG+KT+ +R+EK    AQ+
Sbjct: 204 GHSDVLSGLAAVKDEELGKQLYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEKASQTAQR 263

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
           +AEF   HP VK+V Y GL +HPG E H SQ+ GAG+VLSF   S    K +VE      
Sbjct: 264 LAEFFQKHPAVKRVYYPGLADHPGAETHKSQSTGAGAVLSFELESKEAVKKLVENVSLPV 323

Query: 324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
             VS G+V+S++S P  MSHA++P E R+ RG+T+ L+R+SVG+E  +DL  D ++AL+
Sbjct: 324 FAVSLGAVESILSYPATMSHAAMPKEEREKRGITDGLLRLSVGVEHADDLEHDFEQALK 382

Catalyzes the transformation of cystathionine into homocysteine. Also exhibits cysteine desulfhydrase activity in vitro, producing sulfide from cysteine.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q55DV9|CGL_DICDI Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1

 Score =  352 bits (902), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 169/360 (46%), Positives = 240/360 (66%), Gaps = 2/360 (0%)

Query: 24  GALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           GA+  P+  + TF QPS    +  YDY+RSGNPTR A E  +A  + A  AL F SG+A 
Sbjct: 25  GAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAFEECIAACENAKYALSFASGLAT 84

Query: 83  LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKL 142
           L  +THLL +G+E+++ DD+YGGT R  +RV     +    V+   LD++ +A    T+L
Sbjct: 85  LTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRL 144

Query: 143 VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI 202
           VW+E+PTNP  ++ DI+ +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I
Sbjct: 145 VWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYI 204

Query: 203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 262
            GHSD + GVLA   + L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q NA 
Sbjct: 205 NGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAF 264

Query: 263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG-AGSVLSFLTGSLALSKHVVETTKY 321
            I  FL  HP+V++V Y GLP HP HE+   Q KG  G V+ F+ GS+  S+  +E  K 
Sbjct: 265 AICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKL 324

Query: 322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
           F++  S G V+SLI +P  M+HAS+P E R   G+++ L+R+SVGIED+NDL++D+ +AL
Sbjct: 325 FALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  347 bits (890), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 168/360 (46%), Positives = 243/360 (67%), Gaps = 2/360 (0%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    TK +
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAI 139

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           + E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E    NAQK
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQK 259

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYF 322
           IAEFL +   V KV Y GL  HPGHE+   Q    G ++SF LT   A+ K  VE   YF
Sbjct: 260 IAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELTDENAV-KDFVENLSYF 318

Query: 323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           ++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++D+ +AL 
Sbjct: 319 TLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  347 bits (890), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 168/360 (46%), Positives = 243/360 (67%), Gaps = 2/360 (0%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    TK +
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAI 139

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           + E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E    NAQK
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQK 259

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYF 322
           IAEFL +   V KV Y GL  HPGHE+   Q    G ++SF LT   A+ K  VE   YF
Sbjct: 260 IAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELTDENAV-KDFVENLSYF 318

Query: 323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           ++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++D+ +AL 
Sbjct: 319 TLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  346 bits (888), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/359 (45%), Positives = 241/359 (67%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQ +T+KQP A ++  Y+Y+R+ NPTR ALE+L+ +L+  +    F+SGMAA+
Sbjct: 19  GAVSVPIYQVSTYKQPKAGQHTGYEYSRTANPTRTALEALVTELESGEAGYAFSSGMAAI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L  +G+ +V  DD+YGGT R++++V  + G+    V+T   +EV  AI P TK +
Sbjct: 79  TAVMMLFNSGDHVVLTDDVYGGTYRVMTKVLNRLGIESTFVDTSSREEVEKAIRPNTKAI 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+PTNP  +I D+  +A++A   G LL+VDN+  +P   +PL LGADIV+HSATK++ 
Sbjct: 139 YIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+ G++    + L +EL+F+QN+ G  L P D W+ +RG+KT+ LR+E    NA+K
Sbjct: 199 GHSDVVGGLVVTASKELGEELHFVQNSTGGVLGPQDSWLLMRGIKTLGLRMEAIDQNARK 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
           IA FL +HP V+ + Y G   HPGHEL  +Q  G G ++SF  GS       +   K F+
Sbjct: 259 IASFLENHPAVQTLYYPGSSNHPGHELAKTQGAGFGGMISFDIGSEERVDAFLGNLKLFT 318

Query: 324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           I  S G+V+SLIS+P  M+HASIP E R   G+T+ L+RISVGIED  DL+ D+ +AL 
Sbjct: 319 IAESLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQALE 377

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1

 Score =  340 bits (871), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/360 (46%), Positives = 242/360 (67%), Gaps = 2/360 (0%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +L+++ +A    TK V
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIYDLVDLSNLEDLKAAFKAETKAV 139

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           + E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++      LA E+ FLQN+ G+ L P D W+  RG+KT+A R+E    NAQK
Sbjct: 200 GHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDSWLVQRGIKTLAPRMEAHSANAQK 259

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYF 322
           IAEFL +   V KV Y GL  H GHE+   Q    G ++SF LT   A+ K+ VE  +YF
Sbjct: 260 IAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGGMISFELTDENAV-KNFVENLRYF 318

Query: 323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           ++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++DL +AL 
Sbjct: 319 TLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEALEDLLTDLKEALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1

 Score =  335 bits (859), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 162/358 (45%), Positives = 236/358 (65%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGHHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  LL +G+ ++ GDD+YGGT RL ++V  K G+    ++T DL ++  AI P TK +
Sbjct: 79  HAVFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKAL 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV+HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR++  Q NA  
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMQAHQKNALC 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
           +AEFL  HP+V++V Y GLP HP +EL   Q +G   +LSF   + + +   VE+ K F 
Sbjct: 259 VAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEATPFVESLKLFI 318

Query: 324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
           +  S G V+SL+ +P FM+HA IP   R+A G+ + LVR+SVGIE   DL+ DL++A 
Sbjct: 319 LGESLGGVESLVGVPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (taxid: 210)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1

 Score =  334 bits (857), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 162/358 (45%), Positives = 235/358 (65%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  LL +G+ ++ GDD+YGGT RL ++V  K G+    ++T D+ ++  AI P TK +
Sbjct: 79  HAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIIDTSDISQIKKAIKPNTKAL 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR+E  Q NA  
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALC 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
           +AEFL  HP+V++V Y GLP HP +EL   Q +G   +LSF   + + +   VE+ K F 
Sbjct: 259 VAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFI 318

Query: 324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
           +  S G V+SL+ +P FM+HA IP   R+A G+ + LVR+SVGIE   DL+ DL++A 
Sbjct: 319 LGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
255543511	467	cystathionine beta-lyase, putative [Rici	0.987	0.815	0.889	0.0
356571951	467	PREDICTED: cystathionine beta-lyase, chl	0.987	0.815	0.871	0.0
449452983	459	PREDICTED: cystathionine beta-lyase, chl	0.989	0.832	0.861	0.0
363806786	468	cystathionine beta-lyase, chloroplastic-	0.987	0.814	0.868	0.0
449519446	409	PREDICTED: cystathionine beta-lyase, chl	0.989	0.933	0.861	0.0
15230203	464	cystathionine beta-lyase [Arabidopsis th	1.0	0.831	0.841	0.0
8439539	471	cystathionine beta-lyase [Solanum tubero	0.987	0.808	0.855	0.0
30694565	449	cystathionine beta-lyase [Arabidopsis th	1.0	0.859	0.841	0.0
297820494	449	cystathionine beta-lyase [Arabidopsis ly	1.0	0.859	0.841	0.0
225441258	466	PREDICTED: cystathionine beta-lyase, chl	0.987	0.817	0.855	0.0

>gi|255543511|ref|XP_002512818.1| cystathionine beta-lyase, putative [Ricinus communis] gi|223547829|gb|EEF49321.1| cystathionine beta-lyase, putative [Ricinus communis]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/381 (88%), Positives = 366/381 (96%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
            EP +ST+LMNF N+FDPY A+S PLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL
Sbjct: 86  REPNISTILMNFENKFDPYDAMSMPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 145

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
           AKLDKADRA CFTSGMAALAAVTHL+ TG+EI+AGDD+YGG+DRLLS+VTPK+GVVVKRV
Sbjct: 146 AKLDKADRAFCFTSGMAALAAVTHLVETGQEIIAGDDIYGGSDRLLSQVTPKSGVVVKRV 205

Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
           NT +LDEVASAIGPWTKLVW+ESPTNPRQQI DIRKIA++AH HGAL+LVDNSIMSPVLS
Sbjct: 206 NTSNLDEVASAIGPWTKLVWLESPTNPRQQISDIRKIAKIAHTHGALVLVDNSIMSPVLS 265

Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
           +PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA++LYFLQNAEGSGLAPFDCWICL
Sbjct: 266 QPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLARDLYFLQNAEGSGLAPFDCWICL 325

Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 304
           RG+KTMALRVEKQQDNAQKIAEFLA+HPRVKKVNYAGLP HPG +LHYSQAKGAGSVLSF
Sbjct: 326 RGIKTMALRVEKQQDNAQKIAEFLATHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSF 385

Query: 305 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 364
           LTGSL LSKH+VETTKYFSITVSFGSVKSLISMPCFMSHASIP +VR+ARGLTEDL+RIS
Sbjct: 386 LTGSLELSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPADVREARGLTEDLIRIS 445

Query: 365 VGIEDVNDLISDLDKALRTGP 385
           VGIEDVNDLI+DLD ALRTGP
Sbjct: 446 VGIEDVNDLIADLDHALRTGP 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571951|ref|XP_003554134.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Glycine max]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/381 (87%), Positives = 363/381 (95%)

Query: 6   EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLA 65
           EP +ST++MNF ++FDP+GA+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDALESLLA
Sbjct: 87  EPSISTMVMNFESKFDPFGAISTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLA 146

Query: 66  KLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125
           KLDKADRALCFTSGMAAL+AV  L+GTGEEIV GDD+YGG+DRLLS+V P+TG+VVKRVN
Sbjct: 147 KLDKADRALCFTSGMAALSAVVRLVGTGEEIVTGDDVYGGSDRLLSQVVPRTGIVVKRVN 206

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185
           TCDLDEVA+AIG  TKLVW+ESPTNPR QI DIRKI+EMAH+HGAL+LVDNSIMSPVLS+
Sbjct: 207 TCDLDEVAAAIGLRTKLVWLESPTNPRLQISDIRKISEMAHSHGALVLVDNSIMSPVLSQ 266

Query: 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245
           PLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KE+YFLQNAEGSGLAPFDCW+CLR
Sbjct: 267 PLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLEKEMYFLQNAEGSGLAPFDCWLCLR 326

Query: 246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL 305
           G+KTMALR+EKQQDNAQKIAEFLASHPRVK+VNYAGLP HPG +LHYSQAKGAGSVLSFL
Sbjct: 327 GIKTMALRIEKQQDNAQKIAEFLASHPRVKEVNYAGLPGHPGRDLHYSQAKGAGSVLSFL 386

Query: 306 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 365
           TGSLALSKH+VETTKYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDLVRISV
Sbjct: 387 TGSLALSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLVRISV 446

Query: 366 GIEDVNDLISDLDKALRTGPL 386
           GIEDVNDLI+DL  ALRTGPL
Sbjct: 447 GIEDVNDLIADLGNALRTGPL 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452983|ref|XP_004144238.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/382 (86%), Positives = 361/382 (94%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESL 63
           EEEP +ST++MNF ++FDPYGA+STPLYQTATFKQP+ATENGPYDYTRSGNPTRDALESL
Sbjct: 77  EEEPSISTMIMNFESKFDPYGAVSTPLYQTATFKQPTATENGPYDYTRSGNPTRDALESL 136

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+L+KADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS+V P+ G+VVKR
Sbjct: 137 LAELEKADRALCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKR 196

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           VNT DLDEV+SAIGP TKLVW+ESPTNPR QI DIR IA MAH HGAL+LVDNSI+SPVL
Sbjct: 197 VNTSDLDEVSSAIGPLTKLVWLESPTNPRLQISDIRTIATMAHKHGALVLVDNSILSPVL 256

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
           SRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWIC
Sbjct: 257 SRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWIC 316

Query: 244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS 303
           LRG+KT+ALRVEKQQ+NAQKIAEFL +HPRVKKV YAGLP HPG  LHYSQAKGAG+VLS
Sbjct: 317 LRGIKTLALRVEKQQENAQKIAEFLYTHPRVKKVYYAGLPTHPGRSLHYSQAKGAGAVLS 376

Query: 304 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 363
           FLTGSLALSKH+VE+TKYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDL+RI
Sbjct: 377 FLTGSLALSKHIVESTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLIRI 436

Query: 364 SVGIEDVNDLISDLDKALRTGP 385
           SVGIEDVNDLI+DLD ALRTGP
Sbjct: 437 SVGIEDVNDLIADLDNALRTGP 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806786|ref|NP_001242026.1| cystathionine beta-lyase, chloroplastic-like [Glycine max] gi|255641003|gb|ACU20781.1| unknown [Glycine max]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/381 (86%), Positives = 361/381 (94%)

Query: 6   EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLA 65
           EP +STL+MNF ++FDP+GA+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDALESLLA
Sbjct: 88  EPSISTLVMNFESKFDPFGAISTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLA 147

Query: 66  KLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125
           KLDKADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+ GG+DRLLS+V P+TG+VVKR N
Sbjct: 148 KLDKADRALCFTSGMAALSAVVRLVGTGEEIVAGDDVSGGSDRLLSQVVPRTGIVVKRAN 207

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185
           TCDL+EVA+AIGP TKLVW+ESPTNP  QI DI+KI+E+AH+HGAL+LVDNSIMSPVLSR
Sbjct: 208 TCDLNEVAAAIGPKTKLVWLESPTNPWLQISDIQKISEIAHSHGALVLVDNSIMSPVLSR 267

Query: 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245
           PLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KELYFLQNAEGSGLAPFDCW+CLR
Sbjct: 268 PLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLGKELYFLQNAEGSGLAPFDCWLCLR 327

Query: 246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL 305
           G+KTMALR+EKQQDNAQKIAEFLASHPRVKKVNYAGLP HPG +LHYSQAKGAGSVLSFL
Sbjct: 328 GIKTMALRIEKQQDNAQKIAEFLASHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSFL 387

Query: 306 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 365
           TGSL LSKH+VETTKYFSITVSFGSVKS ISMPCFMSHASIP  VR+ARGLTEDLVRISV
Sbjct: 388 TGSLELSKHIVETTKYFSITVSFGSVKSPISMPCFMSHASIPAAVREARGLTEDLVRISV 447

Query: 366 GIEDVNDLISDLDKALRTGPL 386
           GIEDVNDLI+DLD ALRTGPL
Sbjct: 448 GIEDVNDLIADLDNALRTGPL 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519446|ref|XP_004166746.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/382 (86%), Positives = 361/382 (94%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESL 63
           EEEP +ST++MNF ++FDPYGA+STPLYQTATFKQP+ATENGPYDYTRSGNPTRDALESL
Sbjct: 27  EEEPSISTMIMNFESKFDPYGAVSTPLYQTATFKQPTATENGPYDYTRSGNPTRDALESL 86

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+L+KADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS+V P+ G+VVKR
Sbjct: 87  LAELEKADRALCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKR 146

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           VNT DLDEV+SAIGP TKLVW+ESPTNPR QI DIR IA MAH HGAL+LVDNSI+SPVL
Sbjct: 147 VNTSDLDEVSSAIGPLTKLVWLESPTNPRLQISDIRTIAIMAHKHGALVLVDNSILSPVL 206

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
           SRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWIC
Sbjct: 207 SRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWIC 266

Query: 244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS 303
           LRG+KT+ALRVEKQQ+NAQKIAEFL +HPRVKKV YAGLP HPG  LHYSQAKGAG+VLS
Sbjct: 267 LRGIKTLALRVEKQQENAQKIAEFLYTHPRVKKVYYAGLPTHPGRSLHYSQAKGAGAVLS 326

Query: 304 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 363
           FLTGSLALSKH+VE+TKYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDL+RI
Sbjct: 327 FLTGSLALSKHIVESTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLIRI 386

Query: 364 SVGIEDVNDLISDLDKALRTGP 385
           SVGIEDVNDLI+DLD ALRTGP
Sbjct: 387 SVGIEDVNDLIADLDNALRTGP 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230203|ref|NP_191264.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|1708993|sp|P53780.1|METC_ARATH RecName: Full=Cystathionine beta-lyase, chloroplastic; Short=CBL; AltName: Full=Beta-cystathionase; AltName: Full=Cysteine lyase; Flags: Precursor gi|13786771|pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|13786772|pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|704397|gb|AAA99176.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|6911875|emb|CAB72175.1| CYSTATHIONINE BETA-LYASE PRECURSOR (CBL) [Arabidopsis thaliana] gi|222423596|dbj|BAH19767.1| AT3G57050 [Arabidopsis thaliana] gi|332646082|gb|AEE79603.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/386 (84%), Positives = 361/386 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378

Query: 301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438

Query: 361 VRISVGIEDVNDLISDLDKALRTGPL 386
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439539|gb|AAF74980.1|AF082890_1 cystathionine beta-lyase [Solanum tuberosum]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/381 (85%), Positives = 358/381 (93%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
           +EP VST+LMNFSN+FDPYGALSTPLYQT+TFKQPSATENG YDYTRSGNPTRDALE LL
Sbjct: 90  KEPSVSTMLMNFSNDFDPYGALSTPLYQTSTFKQPSATENGQYDYTRSGNPTRDALEKLL 149

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
           A+L+KADRA CFTSGMAALAAVT L+  GEEIVAGDD+YGG+DRLLS+V PK G+VVKRV
Sbjct: 150 AELEKADRAFCFTSGMAALAAVTRLVKAGEEIVAGDDIYGGSDRLLSQVVPKAGIVVKRV 209

Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
           +T +LDEVAS I PWTKL+W+ESPTNPRQQICDIRKIA++AHAHGAL+LVDNSIMSPVLS
Sbjct: 210 DTTNLDEVASVIKPWTKLIWLESPTNPRQQICDIRKIAKIAHAHGALVLVDNSIMSPVLS 269

Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
            PLELGADIVMHSATKFI+GHSD+MAGVLAV+GE LAKE+YFLQNAEG+GLAPFDCW+CL
Sbjct: 270 HPLELGADIVMHSATKFISGHSDLMAGVLAVRGESLAKEVYFLQNAEGAGLAPFDCWLCL 329

Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 304
           RG+KTMALRVEKQQ+NAQKIAEFL+SHPRVKKVNY GL +HPG  LH+SQA GAGSVLSF
Sbjct: 330 RGIKTMALRVEKQQENAQKIAEFLSSHPRVKKVNYPGLLDHPGRSLHFSQATGAGSVLSF 389

Query: 305 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 364
           LTGSLALSKHV E TKYFSITVSFGSVKSLIS+PCFMSHASIPVEVR+ARGLTEDLVRIS
Sbjct: 390 LTGSLALSKHVAEATKYFSITVSFGSVKSLISLPCFMSHASIPVEVREARGLTEDLVRIS 449

Query: 365 VGIEDVNDLISDLDKALRTGP 385
           VGIEDVNDLI DLD AL+TGP
Sbjct: 450 VGIEDVNDLIDDLDYALKTGP 470

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694565|ref|NP_850712.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|17381124|gb|AAL36374.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|21281081|gb|AAM45099.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|332646084|gb|AEE79605.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/386 (84%), Positives = 361/386 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 64  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 123

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 124 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 183

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 184 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 243

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 244 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 303

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 304 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 363

Query: 301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 364 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 423

Query: 361 VRISVGIEDVNDLISDLDKALRTGPL 386
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 424 VRISAGIEDVDDLISDLDIAFKTFPL 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820494|ref|XP_002878130.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata] gi|297323968|gb|EFH54389.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/386 (84%), Positives = 360/386 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 64  MNIKEEASVSTLLVNLDNKFDPFEAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 123

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 124 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 183

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT +LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKIAEMAHA GAL+LVDNSIMS
Sbjct: 184 VKRVNTTNLDEVAAAIGPRTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS 243

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 244 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 303

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 304 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 363

Query: 301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 364 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 423

Query: 361 VRISVGIEDVNDLISDLDKALRTGPL 386
           VRIS GIED +DLISDLD A  T PL
Sbjct: 424 VRISAGIEDADDLISDLDIAFNTCPL 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441258|ref|XP_002274313.1| PREDICTED: cystathionine beta-lyase, chloroplastic [Vitis vinifera] gi|297739922|emb|CBI30104.3| unnamed protein product [Vitis vinifera]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/381 (85%), Positives = 356/381 (93%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
           +EP +ST+L+N+ N+ DP+ A+S PLYQTATFKQPSATENGPYDYTRSGNPTRD LESLL
Sbjct: 85  KEPSISTMLINYENKSDPFDAVSPPLYQTATFKQPSATENGPYDYTRSGNPTRDVLESLL 144

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
           A+LDKADRA CFTSGMAALAAVTHL+  GEEIVAG+D+YGG+DRLLS+VT K G+VVKRV
Sbjct: 145 ARLDKADRAFCFTSGMAALAAVTHLIAPGEEIVAGEDIYGGSDRLLSQVTTKRGIVVKRV 204

Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
           +T +L+EVASAIGP TKLVW+ESPTNPR QI DIRKI EMAH HGALLLVDNSIMSPVLS
Sbjct: 205 DTTNLEEVASAIGPMTKLVWLESPTNPRLQISDIRKITEMAHTHGALLLVDNSIMSPVLS 264

Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
           +PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE LAK+LYFLQNAEGSGLAPFDCWICL
Sbjct: 265 QPLELGADIVMHSATKFIAGHSDVMAGVLAVKGESLAKDLYFLQNAEGSGLAPFDCWICL 324

Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 304
           RG+KTMALRVEKQQ+NAQKIAEFL+SHPRVKKVNYAGLP+HPG  LHYSQAKGAGSVLSF
Sbjct: 325 RGIKTMALRVEKQQENAQKIAEFLSSHPRVKKVNYAGLPDHPGRSLHYSQAKGAGSVLSF 384

Query: 305 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 364
           LTGSL  SK++VETTKYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDLVRIS
Sbjct: 385 LTGSLEFSKYIVETTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLVRIS 444

Query: 365 VGIEDVNDLISDLDKALRTGP 385
           VGIED+NDLI+DLD ALRTGP
Sbjct: 445 VGIEDINDLIADLDYALRTGP 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
TAIR|locus:2080605	464	CBL "cystathionine beta-lyase"	1.0	0.831	0.813	2e-168
UNIPROTKB|G4MSN2	454	MGG_07074 "Cystathionine beta-	0.935	0.795	0.510	1.8e-94
ASPGD|ASPL0000069608	458	metG [Emericella nidulans (tax	0.958	0.807	0.509	3.8e-94
CGD|CAL0004561	404	orf19.2092 [Candida albicans (	0.984	0.940	0.494	5.5e-93
POMBASE|SPCC11E10.01	390	SPCC11E10.01 "cystathionine be	0.961	0.951	0.497	2.2e-89
DICTYBASE|DDB_G0269122	387	cysA "cystathionine gamma-lyas	0.927	0.925	0.458	1e-84
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.927	0.949	0.458	3.4e-84
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.927	0.949	0.458	3.4e-84
TIGR_CMR|GSU_0944	377	GSU_0944 "cystathionine beta-l	0.924	0.946	0.445	2.8e-82
TIGR_CMR|GSU_0945	378	GSU_0945 "cystathionine beta-l	0.961	0.981	0.430	2.8e-82

TAIR|locus:2080605 CBL "cystathionine beta-lyase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
 Identities = 314/386 (81%), Positives = 350/386 (90%)

Query:     1 MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
             M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct:    79 MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query:    61 ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
             ES            CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct:   139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query:   121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
             VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct:   199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query:   181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
             PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct:   259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query:   241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
             W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct:   319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378

Query:   301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
             V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct:   379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438

Query:   361 VRISVGIEDVNDLISDLDKALRTGPL 386
             VRIS GIEDV+DLISDLD A +T PL
Sbjct:   439 VRISAGIEDVDDLISDLDIAFKTFPL 464

GO:0003824 "catalytic activity" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA;IMP

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=TAS

UNIPROTKB|G4MSN2 MGG_07074 "Cystathionine beta-lyase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 187/366 (51%), Positives = 252/366 (68%)

Query:    21 DPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSG 79
             D YGA S P+YQ+ATFKQ SA   N  YDYTRSGNPTR  LE                SG
Sbjct:    56 DQYGASSIPIYQSATFKQSSAAGGNSEYDYTRSGNPTRTHLERHMAKIMNANRALAVGSG 115

Query:    80 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
             M AL  +T LL  G+E++ GDDLYGGT+RLL+ ++   G++V  ++T D+D VA+ +   
Sbjct:   116 MGALDVITRLLRPGDEVITGDDLYGGTNRLLTYLSANQGIIVHHIDTTDIDRVAATVSDK 175

Query:   140 TKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHS 197
             T +V +E+PTNP  +I D+  IA  AH     AL++VDN+++SP+L  PL+LGADIV  S
Sbjct:   176 TAMVLLETPTNPLIKIVDVATIARAAHDRNSKALVVVDNTMLSPMLCNPLDLGADIVYES 235

Query:   198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
              TK+++GH D+M+G++A     LA  +YF  NA G GL+P D ++ +RG+KT+A+R+EKQ
Sbjct:   236 GTKYLSGHHDIMSGIVACNDAALADRMYFTVNATGCGLSPNDSFLLMRGIKTLAVRMEKQ 295

Query:   258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE 317
             Q NAQ+IAEFL SH    +V Y GL  HP ++LH+S A+GAG+VLSF TG   LS+ +VE
Sbjct:   296 QANAQRIAEFLESHGF--RVRYPGLKSHPQYDLHWSMARGAGAVLSFETGDAELSQRIVE 353

Query:   318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 377
               + ++I+VSFG V SLISMPC MSHASI  + R+ R + ED++R+ VGIEDV DLI DL
Sbjct:   354 AARLWAISVSFGCVNSLISMPCQMSHASIDAKTRKERQMPEDIIRLCVGIEDVQDLIDDL 413

Query:   378 DKALRT 383
              +AL T
Sbjct:   414 SRALVT 419

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000069608 metG [Emericella nidulans (taxid:162425)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 191/375 (50%), Positives = 259/375 (69%)

Query:     9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXX 68
             ++T L+ ++   D Y A S P+YQ+ATFKQ S    G YDYTRSGNPTR  LE       
Sbjct:    38 IATELV-YTESNDQYNASSVPIYQSATFKQSSHEGGGEYDYTRSGNPTRTHLERHLAKIM 96

Query:    69 XXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
                     +SGMAAL  +T LL  G+E+V GDDLYGGT+RLL  ++   G++V  V+T +
Sbjct:    97 SAQRALVVSSGMAALDVITRLLRPGDEVVTGDDLYGGTNRLLKYLSTNGGIIVHHVDTTN 156

Query:   129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH-AH-GALLLVDNSIMSPVLSRP 186
              D+V   +   T +V +E+PTNP  +I DI  IA  +H A+   L++VDN++MSP+L  P
Sbjct:   157 PDKVKEVLTDKTAMVLLETPTNPLIKIVDIPTIAAASHEANPNCLVIVDNTMMSPLLLSP 216

Query:   187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
             LELGAD+V  S TK+++GH DVMAGV+AV    L + LYF  NA G GL+PFD W+ +RG
Sbjct:   217 LELGADVVYESGTKYLSGHHDVMAGVIAVNDPALGERLYFPINASGCGLSPFDSWLLMRG 276

Query:   247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT 306
             VKT+ +R+++QQ NAQ+IAEFL SH    KV Y GL  HP ++LH+S A+GAG+VLSF T
Sbjct:   277 VKTLKVRMDQQQANAQRIAEFLESHGF--KVRYPGLRSHPQYDLHHSMARGAGAVLSFET 334

Query:   307 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 366
             G +++S+ +V   K ++I+VSFG V SLIS+PC MSHASI  + R+ R + EDL+R+ VG
Sbjct:   335 GDVSVSERIVANAKLWAISVSFGCVNSLISLPCRMSHASIDAKTRKERAMPEDLIRLCVG 394

Query:   367 IEDVNDLISDLDKAL 381
             IEDV+DLI DL +A+
Sbjct:   395 IEDVDDLIDDLRRAV 409

GO:0004121 "cystathionine beta-lyase activity" evidence=RCA;IMP;IDA

GO:0006555 "methionine metabolic process" evidence=RCA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

CGD|CAL0004561 orf19.2092 [Candida albicans (taxid:5476)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 192/388 (49%), Positives = 261/388 (67%)

Query:     1 MSVEEEPGVST-LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDA 59
             MS ++   + T L++N S   D Y A   PLYQ+ATFKQPS +  G YDYTRSGNPTR  
Sbjct:     1 MSPKKSYSLETELVLNKSG--DQYNASVPPLYQSATFKQPSLSNMGEYDYTRSGNPTRTH 58

Query:    60 LESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV 119
             L++              +SGM  L  +T LL  G+E++AGDDLYGGT RLL+ ++ K  +
Sbjct:    59 LQNHIAKIMKAEHAFAVSSGMGCLDVITRLLKPGDEVIAGDDLYGGTHRLLTYLSKKGDI 118

Query:   120 VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH-AHGALLLV-DNS 177
             V    +T + + + S I   TK++++ESPTNP  ++ D++ IA+ AH A+  +++V DN+
Sbjct:   119 VAHHYDTTNTELIKSKINNKTKMIFLESPTNPLIKVVDVKSIADHAHKANRDIVVVFDNT 178

Query:   178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 237
             +MSPVL  PL+LG DI   SATK++ GH D+MAGV+A +   LA++LY++ N+ G GL+P
Sbjct:   179 MMSPVLMTPLDLGVDIQYESATKYLNGHHDIMAGVIATRSSSLAEQLYYIINSTGCGLSP 238

Query:   238 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG 297
             FDCW+  RG+KT+A+RVEKQQ N  +IA+FL +     KV Y GL  HP +ELH S   G
Sbjct:   239 FDCWLLSRGLKTLAIRVEKQQQNCIRIAKFLENIGF--KVRYPGLKSHPQYELHSSMCSG 296

Query:   298 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT 357
              G+VLSF TGS+ LS+ +VE T  F I VSFG V SLISMPC MSHASI  + R+ R   
Sbjct:   297 YGAVLSFETGSVRLSEKIVENTDIFGIAVSFGCVNSLISMPCKMSHASIDAKTREEREFP 356

Query:   358 EDLVRISVGIEDVNDLISDLDKAL-RTG 384
             EDL+R+ +GIE+ +DLI DL KAL R+G
Sbjct:   357 EDLIRLCIGIENCDDLIDDLTKALLRSG 384

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA

POMBASE|SPCC11E10.01 SPCC11E10.01 "cystathionine beta-lyase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 187/376 (49%), Positives = 251/376 (66%)

Query:     9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXX 68
             V T L++     D Y A S P+YQ+ATFKQP     G +DYTRSGNPTR  L+       
Sbjct:     9 VDTELVHVEGNEDQYHASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLM 68

Query:    69 XXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
                     ++GM+AL  +     +   +VAG DLYGG+DRLLS    + G  V  V+T D
Sbjct:    69 KAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSD 128

Query:   129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH--AHGALLLVDNSIMSPVLSRP 186
             L    +A+ P T LV +ESPTNPR  ICDIR I ++    A  ALL++DN+++SPVL  P
Sbjct:   129 LAAFEAALRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNP 188

Query:   187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
             L+ G DIV  SATK+++GH D+M GV+A K + +AK ++F  NA G+ +APF+C++ LRG
Sbjct:   189 LDFGYDIVYESATKYLSGHHDLMGGVIATKSDEIAKSVFFNINAMGAAMAPFECFLLLRG 248

Query:   247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL-PEHPGHELHYSQAKGAGSVLSFL 305
             +KTM LRVE+ Q NA +IA+FL S  +  +VN+ GL P+     + YS A+G G+V+S  
Sbjct:   249 IKTMGLRVERAQQNAIEIAKFLKS--KGLQVNFPGLDPDAKSTAIFYSFARGPGAVMSVF 306

Query:   306 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 365
             TG + +SK +V TTK F I+VSFG+V SLISMP +MSHASI  EVR ARGL+EDL+RI V
Sbjct:   307 TGDVEVSKTIVNTTKLFEISVSFGAVNSLISMPAYMSHASIKKEVRDARGLSEDLIRICV 366

Query:   366 GIEDVNDLISDLDKAL 381
             GIE+V+DL +DL+ AL
Sbjct:   367 GIENVDDLKADLENAL 382

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005777 "peroxisome" evidence=ISS

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=IC

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

DICTYBASE|DDB_G0269122 cysA "cystathionine gamma-lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 165/360 (45%), Positives = 234/360 (65%)

Query:    24 GALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAA 82
             GA+  P+  + TF QPS    +  YDY+RSGNPTR A E              F SG+A 
Sbjct:    25 GAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAFEECIAACENAKYALSFASGLAT 84

Query:    83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKL 142
             L  +THLL +G+E+++ DD+YGGT R  +RV     +    V+   LD++ +A    T+L
Sbjct:    85 LTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRL 144

Query:   143 VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI 202
             VW+E+PTNP  ++ DI+ +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I
Sbjct:   145 VWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYI 204

Query:   203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 262
              GHSD + GVLA   + L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q NA 
Sbjct:   205 NGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAF 264

Query:   263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG-AGSVLSFLTGSLALSKHVVETTKY 321
              I  FL  HP+V++V Y GLP HP HE+   Q KG  G V+ F+ GS+  S+  +E  K 
Sbjct:   265 AICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKL 324

Query:   322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
             F++  S G V+SLI +P  M+HAS+P E R   G+++ L+R+SVGIED+NDL++D+ +AL
Sbjct:   325 FALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384

GO:0005615 "extracellular space" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080146 "L-cysteine desulfhydrase activity" evidence=IEA

GO:0044540 "L-cystine L-cysteine-lyase (deaminating)" evidence=IEA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IEA;ISS

GO:0006534 "cysteine metabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 164/358 (45%), Positives = 243/358 (67%)

Query:    24 GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL 83
             G+++ P+YQT+T+KQ +  ++  Y+Y+R+GNPTR ALE              F SGMAA+
Sbjct:    19 GSVNVPIYQTSTYKQEAVGKHQGYEYSRTGNPTRAALEEMIAVLENGHAGFAFGSGMAAI 78

Query:    84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
              A   L   G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P TK +
Sbjct:    79 TATIMLFSKGDHVILTDDVYGGTYRVITKVLNRFGIEHTFVDTTNLEEVEEAIRPNTKAI 138

Query:   144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
             +VE+PTNP  +I DI+KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ 
Sbjct:   139 YVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query:   204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
             GHSDV+AG++ V   +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + N++ 
Sbjct:   199 GHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRA 258

Query:   264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
             IAEFL +HP+V KV Y GL  H  HEL   QA G G+++SF   S      V+E  +YF+
Sbjct:   259 IAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGAIISFDVDSEETLNKVLERLQYFT 318

Query:   324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
             +  S G+V+SLIS+P  M+HASIP + R+  G+T+ L+RISVGIED  DLI DL +AL
Sbjct:   319 LAESLGAVESLISIPSQMTHASIPADRRKELGITDTLIRISVGIEDGEDLIEDLAQAL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 164/358 (45%), Positives = 243/358 (67%)

Query:    24 GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL 83
             G+++ P+YQT+T+KQ +  ++  Y+Y+R+GNPTR ALE              F SGMAA+
Sbjct:    19 GSVNVPIYQTSTYKQEAVGKHQGYEYSRTGNPTRAALEEMIAVLENGHAGFAFGSGMAAI 78

Query:    84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
              A   L   G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P TK +
Sbjct:    79 TATIMLFSKGDHVILTDDVYGGTYRVITKVLNRFGIEHTFVDTTNLEEVEEAIRPNTKAI 138

Query:   144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
             +VE+PTNP  +I DI+KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ 
Sbjct:   139 YVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query:   204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
             GHSDV+AG++ V   +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + N++ 
Sbjct:   199 GHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRA 258

Query:   264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
             IAEFL +HP+V KV Y GL  H  HEL   QA G G+++SF   S      V+E  +YF+
Sbjct:   259 IAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGAIISFDVDSEETLNKVLERLQYFT 318

Query:   324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
             +  S G+V+SLIS+P  M+HASIP + R+  G+T+ L+RISVGIED  DLI DL +AL
Sbjct:   319 LAESLGAVESLISIPSQMTHASIPADRRKELGITDTLIRISVGIEDGEDLIEDLAQAL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_0944 GSU_0944 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 159/357 (44%), Positives = 240/357 (67%)

Query:    24 GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL 83
             GA++ P+YQTATF+ P   ++  YDY+RSGNPTR ALE              + SGMAA+
Sbjct:    19 GAVTVPIYQTATFRHPGLGQSTGYDYSRSGNPTRQALEEGIARLDGGARGFAYASGMAAI 78

Query:    84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
             A +  L  +G+ +V  +DLYGGT RL  ++  + G+    V+T D + V  AI P T+ +
Sbjct:    79 ANLLLLFKSGDHLVVTEDLYGGTCRLFDQILVQYGLSFTYVDTSDPEAVRDAIRPETRAL 138

Query:   144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
             +VES TNP  ++ DI  ++ +    G L +VDN+ ++P L RPL+LGADI ++S TK+++
Sbjct:   139 FVESLTNPLLKVADIAALSTLCRERGLLCIVDNTFLTPYLLRPLDLGADITVYSGTKYLS 198

Query:   204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
             GH+D ++G++ VK   LA+ +YFLQN+ G+ L P D W+ +RG+KT+++R+++QQ+NA +
Sbjct:   199 GHNDTVSGLVVVKEPALAERVYFLQNSVGAVLGPQDAWLTIRGMKTLSVRLDRQQENAGR 258

Query:   264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
             IAE+LA HPRV +V Y GLP HPGHEL   QA+G G++++F     AL + ++  T+  S
Sbjct:   259 IAEWLARHPRVPRVFYPGLPGHPGHELLARQARGFGAMIAFEVDDKALVERLLLKTELIS 318

Query:   324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 380
                S G V++LI+ P   +HA IP EVR+  G+ + L+R+SVGIED +DLI+DL +A
Sbjct:   319 FAESLGGVETLITFPQVQTHADIPPEVRERLGINDVLLRLSVGIEDADDLIADLSRA 375

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_0945 GSU_0945 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 160/372 (43%), Positives = 239/372 (64%)

Query:    11 TLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXX 69
             T +++   E DP  GALS P+YQT+T++Q S    G YDY RS NPTR+ALE        
Sbjct:     5 TRIIHTGREIDPTTGALSVPIYQTSTYRQESVDHFGKYDYARSDNPTREALEETVAQLEN 64

Query:    70 XXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
                   F SGMAA+++   L   G+ +V  +D+YGGT R L+++  + GV    V+  D 
Sbjct:    65 GTRGFAFASGMAAISSTLLLFSPGDHLVVCEDVYGGTFRALTQLFSRLGVESTFVDATDT 124

Query:   130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL 189
               + +A  P TK +++E+P+NP  +I D+   A +A   GA+ LVDN+ M+P L RPL+L
Sbjct:   125 AAIEAAFRPNTKGLYLETPSNPLMKITDLAAAARLARERGAITLVDNTFMTPYLQRPLDL 184

Query:   190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 249
             G D+V+HS TKF+ GHSDV+ G   V+   L + + F+QNA G+ L P D W+ LRG+KT
Sbjct:   185 GCDVVLHSGTKFLNGHSDVVCGFAVVRDPELGQRIRFIQNAFGAILGPQDSWLVLRGIKT 244

Query:   250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL 309
             + +R+E+ Q  A KIA +LA   RV +V Y GLP+HPGH++H  Q+ G G+VLSF   ++
Sbjct:   245 LRVRMEESQAGAVKIANWLAGEKRVSRVFYPGLPDHPGHDIHGRQSSGPGAVLSFTLDTV 304

Query:   310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED 369
               ++ ++E  +  +  VS G V+S+IS P  MSHA++P   R ARG+ + LVR+SVG+ED
Sbjct:   305 ETTRRLLEGMRLAAFAVSLGGVESIISYPARMSHAAMPPAERAARGIGDTLVRLSVGLED 364

Query:   370 VNDLISDLDKAL 381
              +DL++++D+ +
Sbjct:   365 ADDLLAEMDRLI 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32929	CGL_HUMAN	4, ., 4, ., 1, ., 1	0.4360	0.8860	0.8444	yes	no
Q8VCN5	CGL_MOUSE	4, ., 4, ., 1, ., 1	0.4416	0.9274	0.8994	yes	no
Q9ZMW7	METB_HELPJ	2, ., 5, ., 1, ., 4, 8	0.4395	0.9430	0.9578	yes	no
Q1M0P5	METB_HELPX	2, ., 5, ., 1, ., 4, 8	0.4525	0.9274	0.9421	yes	no
Q58DW2	CGL_BOVIN	4, ., 4, ., 1, ., 1	0.4302	0.8860	0.8444	yes	no
P53780	METC_ARATH	4, ., 4, ., 1, ., 8	0.8419	1.0	0.8318	yes	no
P46807	METB_MYCLE	2, ., 5, ., 1, ., 4, 8	0.4379	0.9585	0.9536	yes	no
Q55DV9	CGL_DICDI	4, ., 4, ., 1, ., 1	0.4694	0.9274	0.9250	yes	no
O31632	METC_BACSU	4, ., 4, ., 1, ., 8	0.4735	0.9300	0.9205	yes	no
Q19QT7	CGL_PIG	4, ., 4, ., 1, ., 1	0.4361	0.9274	0.8839	yes	no
P18757	CGL_RAT	4, ., 4, ., 1, ., 1	0.4361	0.9274	0.8994	yes	no
P31373	CYS3_YEAST	4, ., 4, ., 1, ., 1	0.4168	0.9870	0.9670	yes	no
P56069	METB_HELPY	2, ., 5, ., 1, ., 4, 8	0.4525	0.9274	0.9421	yes	no
P66876	METB_MYCBO	2, ., 5, ., 1, ., 4, 8	0.4365	0.9611	0.9561	yes	no
P66875	METB_MYCTU	2, ., 5, ., 1, ., 4, 8	0.4365	0.9611	0.9561	yes	no
P55216	CGL2_CAEEL	4, ., 4, ., 1, ., 1	0.4245	0.9170	0.9030	yes	no
Q83A83	METC_COXBU	4, ., 4, ., 1, ., 8	0.4297	0.9663	0.9638	yes	no
O94350	CBL_SCHPO	4, ., 4, ., 1, ., 8	0.5159	0.9611	0.9512	yes	no
P44502	METB_HAEIN	2, ., 5, ., 1, ., 4, 8	0.3947	0.9326	0.9756	yes	no
P0A4K2	METC_LACLA	4, ., 4, ., 1, ., 8	0.4666	0.9274	0.9421	yes	no
A2RM21	METC_LACLM	4, ., 4, ., 1, ., 8	0.4666	0.9274	0.9421	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	386
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	0.0
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	0.0
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	0.0
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	0.0
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	1e-164
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	1e-147
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	1e-143
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	1e-139
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	1e-128
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	1e-122
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	1e-113
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	1e-112
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	1e-110
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	1e-107
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	1e-105
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	1e-105
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	1e-105
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	1e-103
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	1e-101
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	1e-101
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	1e-98
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	6e-97
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	1e-96
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	3e-95
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	8e-93
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	1e-89
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	4e-89
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	3e-86
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	5e-86
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	3e-84
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	4e-84
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	1e-83
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	2e-82
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	5e-82
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	6e-79
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	2e-74
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	1e-71
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	1e-71
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	8e-71
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	2e-56
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	9e-55
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	8e-54
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	8e-53
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	6e-50
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	7e-49
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	1e-39
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	4e-12
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	8e-10
TIGR01976	397	TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa	9e-10
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	8e-09
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	2e-08
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	6e-08
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	3e-07
COG0156	388	COG0156, BioF, 7-keto-8-aminopelargonate synthetas	3e-07
PRK00451	447	PRK00451, PRK00451, glycine dehydrogenase subunit	1e-06
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	2e-06
COG0403	450	COG0403, GcvP, Glycine cleavage system protein P (	4e-06
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	5e-06
TIGR00858	360	TIGR00858, bioF, 8-amino-7-oxononanoate synthase	8e-06
PLN02855	424	PLN02855, PLN02855, Bifunctional selenocysteine ly	2e-05
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	3e-05
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	8e-05
COG1921	395	COG1921, SelA, Selenocysteine synthase [seryl-tRNA	8e-05
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	1e-04
PRK04366	481	PRK04366, PRK04366, glycine dehydrogenase subunit	2e-04
COG1982	557	COG1982, LdcC, Arginine/lysine/ornithine decarboxy	2e-04
cd00613	398	cd00613, GDC-P, Glycine cleavage system P-protein,	3e-04
TIGR01825	385	TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-depe	4e-04
PRK05367	954	PRK05367, PRK05367, glycine dehydrogenase; Provisi	0.001
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	0.001
pfam02347	429	pfam02347, GDC-P, Glycine cleavage system P-protei	0.001
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	0.001
COG1003	496	COG1003, GcvP, Glycine cleavage system protein P (	0.001
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	0.001
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	0.003

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  768 bits (1985), Expect = 0.0
 Identities = 328/386 (84%), Positives = 363/386 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT +LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKIAEMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378

Query: 301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438

Query: 361 VRISVGIEDVNDLISDLDKALRTGPL 386
           VRIS GIEDV+DLISDLD A RTGPL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFRTGPL 464

Length = 464

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  634 bits (1638), Expect = 0.0
 Identities = 282/378 (74%), Positives = 326/378 (86%)

Query: 9   VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           +STLL+N  N+ DPY A S P+YQTATFKQP A ENGPYDYTRSGNPTR ALESLLAKLD
Sbjct: 1   LSTLLVNTDNKNDPYDASSMPIYQTATFKQPLAIENGPYDYTRSGNPTRTALESLLAKLD 60

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
           KADRA  F+SGMAAL  +T LL  G+EI+AGDDLYGGTDRLL++V P++GVVV  V+T D
Sbjct: 61  KADRAFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTD 120

Query: 129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE 188
           LD+V +A+GP TKLV +ESPTNP Q+I DIRKI+EMAHA  AL++VDN++MSP+L  PLE
Sbjct: 121 LDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLE 180

Query: 189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248
           LGADIV HSATKF+AGHSDVMAGVLAVKGE +AK++YFLQN+ GSGLAPFDCW+ LRG+K
Sbjct: 181 LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIK 240

Query: 249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS 308
           T+A+R+EKQQ+NA+ IA FL++HPRVKKV YAGLP HPG  LH+SQAKGAGSVLSF TGS
Sbjct: 241 TLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS 300

Query: 309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE 368
           +ALSK +VE TK FSITVSFGSV SLISMPCFMSHASIP EVR+ RGL EDLVR+SVGIE
Sbjct: 301 VALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIE 360

Query: 369 DVNDLISDLDKALRTGPL 386
           DV+DLISDLD A  T P 
Sbjct: 361 DVDDLISDLDIAFVTAPA 378

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  540 bits (1393), Expect = 0.0
 Identities = 204/381 (53%), Positives = 268/381 (70%), Gaps = 9/381 (2%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT-----ENGPYDYTRSGNPTRDALESL 63
           +TL ++     D   GA+  P+Y T+T+   +       E+G YDY+RSGNPTRDALE  
Sbjct: 1   ATLAVHAGQRPDRQTGAVVVPIYLTSTYVFDTVEALFAGEHGGYDYSRSGNPTRDALEER 60

Query: 64  LAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122
           +A L+  + AL F+SGMAA+ AA+  LL  G+ +VA DDLYGGT RL  +V P+ G+ V 
Sbjct: 61  IAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVT 120

Query: 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
            V+  DLD + +AI P TK V++E+PTNP  ++ DI  IA++A  HGAL++VDN+  SP 
Sbjct: 121 FVDPSDLDALEAAIKPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASPY 180

Query: 183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPFDCW 241
           L RPLELGADIV+HSATK+I GHSDV+ GV+ V G E LAK L FLQNA G+ L+PFD W
Sbjct: 181 LQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLSPFDAW 240

Query: 242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV 301
           + LRG+KT+ LR+E+ Q+NA K+AEFL  HP+V+KV Y GLP HPGHEL   Q  G G +
Sbjct: 241 LLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMSGFGGM 300

Query: 302 LSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
           LSF L G L  +   ++  K FS+  S G V+SLIS P  M+HASIP E R+A G+T+ L
Sbjct: 301 LSFELKGGLEAASKFLDNLKLFSLAESLGGVESLISHPATMTHASIPPEEREAAGITDGL 360

Query: 361 VRISVGIEDVNDLISDLDKAL 381
           +R+SVGIEDV+DLI+DL +AL
Sbjct: 361 IRLSVGIEDVDDLIADLKQAL 381

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  507 bits (1309), Expect = 0.0
 Identities = 197/369 (53%), Positives = 254/369 (68%), Gaps = 10/369 (2%)

Query: 24  GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNPTRDALESLLAKLDKADRALC 75
           GA++ P+YQT+TF  PS        A   G Y Y+R GNPT DALE  LA L+  + AL 
Sbjct: 1   GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALA 60

Query: 76  FTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134
           F+SGMAA++ V   LL  G+ +VA DDLYGGT RL  R+ PK G+ V  V+  D + + +
Sbjct: 61  FSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEA 120

Query: 135 AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
           AI P TKLV+VESPTNP  ++ DI  IAE+AH HGALL+VDN+  +P L RPLELGADIV
Sbjct: 121 AIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIV 180

Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           +HSATK+I GHSDV+AGV+   GE L + L FL+ A G+ L+PFD W+ LRG+KT+ LR+
Sbjct: 181 VHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM 240

Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSK 313
           E+  +NA K+AEFL  HP+V++V Y GLP HP HEL   Q  G G V SF L G L  +K
Sbjct: 241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAK 300

Query: 314 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 373
             +   K FS+ VS G V+SL+  P  M+H+ +P E R A G+T  LVR+SVGIEDV DL
Sbjct: 301 KFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDL 360

Query: 374 ISDLDKALR 382
           I+DL++AL+
Sbjct: 361 IADLEQALK 369

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  466 bits (1202), Expect = e-164
 Identities = 189/389 (48%), Positives = 258/389 (66%), Gaps = 12/389 (3%)

Query: 5   EEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNP 55
            +  ++T L++     D   GA++ P+Y T+TF   SA         E G YDY+R+GNP
Sbjct: 4   AKLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNP 63

Query: 56  TRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           TRDALE  LA+L+  + A  F+SGMAA+  A+  LL  G+ ++  DDLYGGT RL  ++ 
Sbjct: 64  TRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKIL 123

Query: 115 PKTGV-VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL 173
            K GV V       D    A+   P TKLV++E+P+NP  ++ DI  IA +A A+GAL++
Sbjct: 124 QKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVV 183

Query: 174 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G 232
           VDN+  +PVL RPLELGADIV+HSATK++ GHSDV+ GV+    E L + L+F Q A  G
Sbjct: 184 VDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTG 243

Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+PFD W+ LRG++T+ALR+E+  +NA KIAEFLA HP+VKKV Y GLP HPGHEL  
Sbjct: 244 AVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAK 303

Query: 293 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ 352
            Q  G G + SF   +   +K  +++ K F +  S G V+SLIS P  M+HASIP+E R 
Sbjct: 304 RQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERA 363

Query: 353 ARGLTEDLVRISVGIEDVNDLISDLDKAL 381
             G+T+ LVR+SVG+EDV DLI+DL++AL
Sbjct: 364 KAGITDGLVRLSVGLEDVEDLIADLEQAL 392

Length = 396

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  421 bits (1083), Expect = e-147
 Identities = 174/358 (48%), Positives = 250/358 (69%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQ +T+KQ +  ++  Y+Y+R+GNPTR ALE L+A L+       F SGMAA+
Sbjct: 19  GAVSVPIYQVSTYKQEAVGKHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L  +G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P TK +
Sbjct: 79  TAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAI 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           +VE+PTNP  +I DI+KI+ +A   G L +VDN+ M+P    P+ LGADIV+HSATK++ 
Sbjct: 139 YVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++ V    LA++L+F+QN+ G  L P D W+ LRG+KT+ +R+E+ + N++ 
Sbjct: 199 GHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGIRMEEHETNSRA 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
           IAEFL +HP V KV Y GLP HP HEL   QA G G ++SF  GS   +  V+E  +YF+
Sbjct: 259 IAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQYFT 318

Query: 324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
           +  S G+V+SLIS+P  M+HASIP + R+  G+T+ L+RISVGIED  DLI DL +AL
Sbjct: 319 LAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQAL 376

Length = 377

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  411 bits (1058), Expect = e-143
 Identities = 171/379 (45%), Positives = 253/379 (66%), Gaps = 1/379 (0%)

Query: 4   EEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
                + TLL++   + D   GA++ P+Y  +TF Q      G YDY+RSGNPTR+ALE 
Sbjct: 2   AMSYSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDTFGKYDYSRSGNPTREALED 61

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122
           ++A+L+   +   F SGMAA++    LL  G+ ++  +D+YGGT R+++ V  + G+   
Sbjct: 62  IIAELEGGTKGFAFASGMAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHT 121

Query: 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
            V+  +L+EVA  I P TKL +VE+P+NP  ++ DIR + ++A A G L  VDN+ ++P+
Sbjct: 122 FVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPL 181

Query: 183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242
           L +PL+LGAD+V+HSATKF+AGHSDV+AG+  VK E LA++LYFLQN+ G+ L   DCW+
Sbjct: 182 LQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL 241

Query: 243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL 302
            LRG+KT+ +R+E   + A KIA +L  HP+V+ V Y GL  H G ++  SQA  AG+VL
Sbjct: 242 VLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVL 301

Query: 303 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR 362
           SF   S    +  V   K     VS G+V+S++S P  MSHA++P E R  RG+T+ L+R
Sbjct: 302 SFTLQSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLR 361

Query: 363 ISVGIEDVNDLISDLDKAL 381
           +SVG+E+V+DLI+D ++AL
Sbjct: 362 LSVGLENVDDLIADFEQAL 380

Length = 390

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  400 bits (1030), Expect = e-139
 Identities = 175/382 (45%), Positives = 238/382 (62%), Gaps = 15/382 (3%)

Query: 8   GVSTLLMNFSNEFDPY-GALSTPLYQTATFKQ--PSATENGPYDYTRSGNPTRDALESLL 64
           G +T  ++   E DP  GA++ P+Y ++TF Q        G Y+Y R+GNPTR ALE  L
Sbjct: 12  GFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGLRGG-YEYARTGNPTRTALEEQL 70

Query: 65  AKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           A L+       F+SGMAA    +  +L  G+ IV  +D YGGT RL+ +V  + GV    
Sbjct: 71  AALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           V+  DLD V +AI P TKL+WVE+PTNP   I DI  +AE+AH  GA ++VDN+  SP L
Sbjct: 131 VDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYL 190

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
            +PL LGAD+V+HS TK+I GHSDV+ G L    E L +   FLQN  G+   PFD ++ 
Sbjct: 191 QQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLT 250

Query: 244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS 303
           LRG+KT+A+R+++  +NA+ +AEFLA HP V  V Y GLP HPGHE+   Q +G G ++S
Sbjct: 251 LRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVS 310

Query: 304 F-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI---PVEVRQARGLTED 359
             L G    ++     TK F++  S G V+SLI  P  M+HAS     +EV       +D
Sbjct: 311 VRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTHASTAGSQLEV------PDD 364

Query: 360 LVRISVGIEDVNDLISDLDKAL 381
           LVR+SVGIEDV DL++DL++AL
Sbjct: 365 LVRLSVGIEDVADLLADLEQAL 386

Length = 388

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  373 bits (959), Expect = e-128
 Identities = 165/358 (46%), Positives = 234/358 (65%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +      Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGRPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L  +G+ ++ GDD+YGGT RL  +V  K G+    ++T DL ++  AI P TK +
Sbjct: 79  HAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKAL 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV+HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR+E  Q NA  
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALC 258

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
           +AEFL  HP+V+KV Y GLP HP HEL   Q +G   +LSF   + + +   VE+ K F 
Sbjct: 259 VAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFI 318

Query: 324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
           +  S G V+SL+ +P FM+HA IP E R+A G+ + LVR+SVGIE   DL+ DL++A 
Sbjct: 319 LGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376

Length = 380

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  356 bits (915), Expect = e-122
 Identities = 154/374 (41%), Positives = 219/374 (58%), Gaps = 17/374 (4%)

Query: 9   VSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKL 67
           + T L    N  D   G ++ P+Y +  ++     E+  +DY+R+GNPTR  LE  +A L
Sbjct: 5   IETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIGESTGFDYSRTGNPTRGVLEQAIADL 64

Query: 68  DKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
           +  D+    +SGMAA+  V  L  +G+E++   DLYGGT RL      K  V    VNT 
Sbjct: 65  EGGDQGFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA 124

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
            L  +  AI P TK +++E+PTNP  Q  DI  IA++A  HG LL+VDN+  +PVL RPL
Sbjct: 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL 184

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
           E GADIV+HSATK++ GH+DV+AG++  KG+ L + L + QNA G+ L+PFD W+ +RG+
Sbjct: 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGM 244

Query: 248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG 307
           KT+ALR+ + ++NA+ IA FL   P V  V Y                 G G +LSF   
Sbjct: 245 KTLALRMRQHEENAKAIAAFLNEQPGVTDVLYP----------------GRGGMLSFRLQ 288

Query: 308 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI 367
                   +++ K  +   S G V+S I+ P   +HA IP E+R A G+   L+R SVGI
Sbjct: 289 DEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI 348

Query: 368 EDVNDLISDLDKAL 381
           E+V DLI+DL +A 
Sbjct: 349 ENVEDLIADLKQAF 362

Length = 366

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  334 bits (858), Expect = e-113
 Identities = 155/362 (42%), Positives = 228/362 (62%), Gaps = 2/362 (0%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           YG +  P+Y + T+      E   YDY+RSGNPTRD L+  LA+L+    A+   +GM+A
Sbjct: 19  YGCVVPPIYLSTTYNFTGFNEPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSA 78

Query: 83  LAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 141
           +  V T LLG  + +VA  D YGGT RLL+ +  K    V  V+  D   + +A+    K
Sbjct: 79  IHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPK 138

Query: 142 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201
           LV +E+P+NP  ++ DI KI  +A A GA+++VDN+ +SP L  PL LGAD+V+HS TK+
Sbjct: 139 LVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKY 198

Query: 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 261
           + GHSDV+AG +  K  ++A+EL +  N  G     FD ++ LRG++T+  R+  QQ NA
Sbjct: 199 LNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVARMRLQQRNA 258

Query: 262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTK 320
           Q I E+L + P VKK+ Y GLP+HPGHE+   Q KG G++LSF L G     +  +    
Sbjct: 259 QAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLS 318

Query: 321 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 380
            F++  S G V+SLI+ P  M+HA++  E R   G+++ L+R+SVG+ED +DLI+DL++ 
Sbjct: 319 LFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGLEDADDLIADLEQG 378

Query: 381 LR 382
           LR
Sbjct: 379 LR 380

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  333 bits (857), Expect = e-112
 Identities = 152/422 (36%), Positives = 219/422 (51%), Gaps = 43/422 (10%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-------NGP-YDYTRSGNP 55
               G  TL ++   E    GA + P+YQT ++                P   YTR  NP
Sbjct: 3   SANWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNP 62

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T D LE  +A L+    AL   SG AA+      L G G+ IV+   LYGGT  L S   
Sbjct: 63  TTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTL 122

Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + G+ V+ V+  D +   +AI   TK V+ E+  NP   + DI  IAE+AH HG  L+V
Sbjct: 123 KRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIV 182

Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL--------------------- 213
           DN+  +P L RP+E GADIV+HSATK+I GH   + GV+                     
Sbjct: 183 DNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPD 242

Query: 214 ----AVKGERLAKELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 262
                +          F+  A        G+ L+PF+ ++ L+G++T++LR+E+  +NA 
Sbjct: 243 PSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENAL 302

Query: 263 KIAEFLASHPRVKKVNYAGLPEHPGHEL-HYSQAKGAGSVLSF-LTGSLALSKHVVETTK 320
           K+AEFL +HP+V  VNY GL  HP H L      KGAG+VL+F + G     K  ++  K
Sbjct: 303 KVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALK 362

Query: 321 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 380
            FS   + G  +SL+  P   +H  +  E + A G+T DL+R+SVGIED++D+I+DL++A
Sbjct: 363 LFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGIEDIDDIIADLEQA 422

Query: 381 LR 382
           L 
Sbjct: 423 LE 424

Length = 426

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  326 bits (839), Expect = e-110
 Identities = 146/371 (39%), Positives = 222/371 (59%), Gaps = 11/371 (2%)

Query: 22  PYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRA 73
           P+G  S  L+ T++F   SA E             Y+R  NPT    +  LA L+ A+  
Sbjct: 20  PFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEAC 79

Query: 74  LCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV 132
           +   SGMAA LA V  LL  G+ +V+   L+G T  L  ++  + G+    V+  DLD  
Sbjct: 80  VATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAW 139

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
            +A+ P TKL ++E+P+NP  ++ DI  +AE+AHA GALL+VDN   +P L +PL+LGAD
Sbjct: 140 RAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGAD 199

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL 252
           +V+HSATK++ G   V+ G +    E + +   FL+ A G  L+PF+ W+ L+G++T++L
Sbjct: 200 VVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTA-GPTLSPFNAWVFLKGLETLSL 258

Query: 253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLAL 311
           R+E    NA  +AE+L +HP V++V Y GLP HP HEL   Q KG G+++SF + G    
Sbjct: 259 RMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREA 318

Query: 312 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN 371
           +  V++ T+  SIT + G  K+ I+ P   +H  +  E R A G+TE L+R++VG+EDV 
Sbjct: 319 AWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLEDVA 378

Query: 372 DLISDLDKALR 382
           D+ +DL + L 
Sbjct: 379 DIKADLARGLA 389

Length = 390

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  319 bits (820), Expect = e-107
 Identities = 149/373 (39%), Positives = 233/373 (62%), Gaps = 15/373 (4%)

Query: 23  YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRAL 74
           +G+L+TP+YQT+TF   SA + G         Y Y+R GNPT   +E+ LA L+  + A+
Sbjct: 24  FGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAV 83

Query: 75  CFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA 133
              SGM A+ +++   L  G+ +VA D LYG T  LL+    + GV V  V+T +L+EV 
Sbjct: 84  VAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVR 143

Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGA 191
           +A+   TK+V++E+P NP  ++ DI+ I+ +AH +    L+ VDN+  +P + RPL+LGA
Sbjct: 144 NALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGA 203

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKT 249
           D+V+HSATK++ GH DV+AG   V  E    ++    +++  GS + PF+ ++ +RG+KT
Sbjct: 204 DVVVHSATKYLNGHGDVIAG-FVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT 262

Query: 250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGS 308
           + +R+EK   NA K+A+FL SHP V+KV Y GL     +EL   Q    G+++SF L G 
Sbjct: 263 LQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG 322

Query: 309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE 368
           +   K V+   K  ++ VS G  ++LI  P  M+H+    E R+  G+++ LVR+SVG+E
Sbjct: 323 VEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLE 382

Query: 369 DVNDLISDLDKAL 381
           DV+D+I+DL +AL
Sbjct: 383 DVDDIIADLKQAL 395

Length = 400

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  315 bits (809), Expect = e-105
 Identities = 146/380 (38%), Positives = 220/380 (57%), Gaps = 9/380 (2%)

Query: 11  TLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALES 62
           TL +        +   +  LY T+ +   SA         E   + Y+R GNPT    E 
Sbjct: 2   TLAVRGGMLRSGFEETAEALYLTSGYVYDSAAVAAKRFAGELPGFVYSRYGNPTVSVFEE 61

Query: 63  LLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV 121
            LA L+ A+ A+   SGMAA  AA+  LLG G+ +VA   L+G    + S + P+ GV  
Sbjct: 62  RLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRFGVQT 121

Query: 122 KRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 181
             V+  DL    +A+ P TK V+VE+P+NP Q++ DI  +AE+AHA GA ++VDN   +P
Sbjct: 122 VFVDGTDLSAWEAALKPNTKAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATP 181

Query: 182 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241
           +L +PL+LGAD+V++SATK I G   V+ G +    E + + +  L    G  ++PF+ W
Sbjct: 182 LLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEPVQKLLRHTGPAMSPFNAW 241

Query: 242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV 301
           + L+G++T+A+RV+ Q  +A  IAE+L  HP V+ V Y GLP HP HEL   Q  G G+V
Sbjct: 242 VLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQWVYYPGLPSHPQHELAKRQMSGGGTV 301

Query: 302 LSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV 361
           ++F       +  V++  +   I+ + G  KS I+ P   +H  +  E R A G+ + LV
Sbjct: 302 VTFDLDCRQAAFKVLDAMRLVDISNNLGDAKSTITHPATTTHRRMGPEERAAAGIGDGLV 361

Query: 362 RISVGIEDVNDLISDLDKAL 381
           R+SVG+EDV+DLI+D+D+AL
Sbjct: 362 RLSVGLEDVDDLIADIDRAL 381

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  316 bits (810), Expect = e-105
 Identities = 147/372 (39%), Positives = 235/372 (63%), Gaps = 11/372 (2%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADR 72
           D +GAL+ P+YQT+TF   S  + G         Y Y+R GNPT   LE  +A L+  + 
Sbjct: 17  DQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEA 76

Query: 73  ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A+  +SGM A+AA +  +L  G+ +++ + LYG T  LL     K G+ V  +N    +E
Sbjct: 77  AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE 136

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           V + I   TK+V+ E+P NP  ++ D+ ++   AH+ G  ++VDN+  +P+L+ P+ LG 
Sbjct: 137 VKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGV 196

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTM 250
           D+V+HSATK+I GH DV+AG++  K E L +  +  +++  GS ++PFD W+ LRG+KT+
Sbjct: 197 DVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL 256

Query: 251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSL 309
            +R+++  +NA K+AE+L SHP V+KV Y G  +HPGH++   Q +  G +++F L G  
Sbjct: 257 NIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGF 316

Query: 310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED 369
           A +K ++   K   + VS G  ++LI  P  M+HA +P E R+A G+T+ ++R+SVG+ED
Sbjct: 317 AGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLED 376

Query: 370 VNDLISDLDKAL 381
            +DLI+DL +AL
Sbjct: 377 ADDLIADLKQAL 388

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  315 bits (809), Expect = e-105
 Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 19/375 (5%)

Query: 21  DPYGALSTPLYQTATFKQP---SATENG-PYDYTRSGNPTRDALESLLAKLDKADRALCF 76
           DPYG+L  P+Y TA F+Q      ++ G    Y+R  NPT   LE  LAKL+    AL F
Sbjct: 15  DPYGSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAF 74

Query: 77  TSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
            SGMAA++ +   LL  G+ +V   + YG T RLL  +  K GV V        +++  A
Sbjct: 75  NSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLE-KFGVKVVLAYP-STEDIIEA 132

Query: 136 I-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
           I    TKLV++E+ TNP  ++ D+ ++A+ A   GA+L+VDN+  +P+L RPL  GAD V
Sbjct: 133 IKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFV 192

Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           +HS TK+IAGH+DV+ GV         +EL+  +   G+ + PF+ ++ LRG+KT+ +R 
Sbjct: 193 VHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLEVRF 252

Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA------GSVLSF-LTG 307
           E+Q  NA  IAEFL+ HP+V +V Y GLP  P H +    AK        G V+SF + G
Sbjct: 253 ERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGV----AKRLFGKDLYGGVVSFRVKG 308

Query: 308 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI 367
                   + + K    + S G V+SL + P   + + IP E R+A G+TEDLVR+SVG+
Sbjct: 309 GRDAVLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGL 368

Query: 368 EDVNDLISDLDKALR 382
           EDV DLI DLD+AL 
Sbjct: 369 EDVEDLIEDLDQALG 383

Length = 385

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  309 bits (793), Expect = e-103
 Identities = 137/373 (36%), Positives = 220/373 (58%), Gaps = 11/373 (2%)

Query: 19  EFDPYGALSTPLYQTATFK-------QPSATENGP-YDYTRSGNPTRDALESLLAKLDKA 70
           E+ PYGA   P+  +  +           A    P + Y+R+ NPT  A E  +  L+ A
Sbjct: 20  EYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGA 79

Query: 71  DRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
           + A  F++GMAA++   +  L  G+ +V+  D YGGT+++ +   P+ GV V    T D 
Sbjct: 80  EAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDH 139

Query: 130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL 189
           +++ + I     L+++E+PTNP  +I DI ++A  A   GAL++VDN+  +P+   PL L
Sbjct: 140 EQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLAL 199

Query: 190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 249
           GAD+V+HSATKF++GH+D + GV     + L +++Y  +   G+ + P   ++ LRG+KT
Sbjct: 200 GADLVIHSATKFLSGHADALGGV-VCGSKELMEQVYHYREINGATMDPMSAYLILRGMKT 258

Query: 250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGS 308
           + LRV +QQ++A  +A++L +HP+V+ V Y GL  HP HE+  +Q +G G +LSF L G 
Sbjct: 259 LKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGG 318

Query: 309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE 368
           +   K ++   +Y     + G+V+++       SH    +E R A G+ E LVRISVGIE
Sbjct: 319 MDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIE 378

Query: 369 DVNDLISDLDKAL 381
           D  DLI+DL++A 
Sbjct: 379 DTEDLIADLEQAF 391

Length = 398

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  304 bits (781), Expect = e-101
 Identities = 150/377 (39%), Positives = 224/377 (59%), Gaps = 16/377 (4%)

Query: 20  FDP---YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLD 68
           +DP    GAL  P+Y TATF  P+A         E   + Y+R  NPT   LE  +A L+
Sbjct: 19  YDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLE 78

Query: 69  KADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
             + A+   SGM A+ A    LL  G+E++    LYG T   L     + GV V+ V+  
Sbjct: 79  GGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT 138

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
           D   + +AI   T++V+ E+P NP  ++ DI  +AE+AH  GA ++VDN+  +P L RPL
Sbjct: 139 DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL 198

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--LYFLQNAEGSGLAPFDCWICLR 245
           ELGAD+V+HSATK++ GH D+ AG L V G+ LA    L  L++  G+ ++PFD ++ +R
Sbjct: 199 ELGADLVVHSATKYLGGHGDITAG-LVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMR 257

Query: 246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF- 304
           G+KT+ALR+++   +AQ +AE+LA HP V+ V+Y GLP    H L   Q    G +++F 
Sbjct: 258 GLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFE 317

Query: 305 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 364
           L G +A  +  +   + F+  VS G  +SL   P  M+H++   E R   G++E LVR+S
Sbjct: 318 LKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLS 377

Query: 365 VGIEDVNDLISDLDKAL 381
           VG+EDV D+++DL +AL
Sbjct: 378 VGLEDVADILADLAQAL 394

Length = 403

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  303 bits (777), Expect = e-101
 Identities = 148/358 (41%), Positives = 223/358 (62%), Gaps = 18/358 (5%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GAL TPL+ + T++ P   ++  +DYTR+ NPTR  LE  LA ++ AD AL  +SGM+A+
Sbjct: 23  GALVTPLHFSTTYQHPEFGQSTGFDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAI 82

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
                +   G ++VA  DLYGG+ R  ++   +        NT   +E+ +AI   T +V
Sbjct: 83  VLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANT--EEELIAAIEEDTDIV 140

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+PTNP     DI K+A++AHA GA ++VDN+  SP+  RP+ELGADIV+HSATK+++
Sbjct: 141 YIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLS 200

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GH+DV+AGV+      L ++L++  N  G+ L+PFD ++ +RG+KT++LR+E+   NAQ+
Sbjct: 201 GHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQE 260

Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 323
           +  FL   P VK+V Y G                 G ++SF         H++ + K F+
Sbjct: 261 VVAFLKKSPAVKEVLYTGK----------------GGMISFKVADETRIPHILNSLKVFT 304

Query: 324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
              S G V+SLI+ P   +HA IP EVR + GLT+DL+R+S+GIED  DLI+DL +AL
Sbjct: 305 FAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQAL 362

Length = 364

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  297 bits (763), Expect = 1e-98
 Identities = 149/372 (40%), Positives = 219/372 (58%), Gaps = 12/372 (3%)

Query: 18  NEFDPYGALSTPLYQTAT-----FKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADR 72
           N+ + YG +  P++ ++T     F +P A     +DY+R GNPTRD ++  LA+L+    
Sbjct: 15  NDDEQYGCVVPPIHLSSTYNFTGFNEPRA-----HDYSRRGNPTRDVVQRALAELEGGAG 69

Query: 73  ALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A+   +GM+A+  V T  L  G+ +VA  D YGG+ RL   +  +    V  V+  D   
Sbjct: 70  AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQA 129

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGA
Sbjct: 130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGA 189

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251
           D+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+ 
Sbjct: 190 DLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV 249

Query: 252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLA 310
            R+E  Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF L G   
Sbjct: 250 PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQ 309

Query: 311 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV 370
             +  +     F++  S G V+SLIS    M+HA +  E R A G++E L+RIS GIED 
Sbjct: 310 TLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDG 369

Query: 371 NDLISDLDKALR 382
            DLI+DL+   R
Sbjct: 370 EDLIADLENGFR 381

Length = 386

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  293 bits (752), Expect = 6e-97
 Identities = 143/369 (38%), Positives = 219/369 (59%), Gaps = 16/369 (4%)

Query: 23  YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRAL 74
            G+L+ PL+QT+TF   +A +           Y Y+R GNPT    E  +A L+  + AL
Sbjct: 21  KGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEAL 80

Query: 75  CFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA 133
            F SGMAA++A     L  G+ I+  + LYG T   L  +  K  +     +     ++ 
Sbjct: 81  AFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIE 140

Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADI 193
           + I P TKL++VE+P NP  ++ D++++  +A  +G L++VDN+  SP L RPLELG D 
Sbjct: 141 NKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDA 200

Query: 194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR 253
           V+HSATK+I GH DV+AGV   K   LA+++  ++   G  +APFD W+ LRG+KT+A+R
Sbjct: 201 VVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLAVR 260

Query: 254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALS 312
           +++  DNA+KI  FL +H  V+ V Y      P  EL   Q K  G V+SF + G    +
Sbjct: 261 MDRHCDNAEKIVSFLKNHDAVEGVWY------PEGELASRQMKRGGGVISFSIKGGKEET 314

Query: 313 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND 372
           +  +    + +I VS G  ++LI  P  M+HA+IP E+RQ  G+ ++L+R+SVG+E   D
Sbjct: 315 QAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWED 374

Query: 373 LISDLDKAL 381
           ++SDL++AL
Sbjct: 375 IVSDLEQAL 383

Length = 386

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  294 bits (754), Expect = 1e-96
 Identities = 150/414 (36%), Positives = 218/414 (52%), Gaps = 43/414 (10%)

Query: 11  TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
           TL ++   E DP  G+ + P+YQT ++   S                Y+R  NPT D LE
Sbjct: 4   TLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLE 63

Query: 62  SLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
             +A L+    AL   SG AA   A+ +L   G+ IV+   LYGGT  L      + G+ 
Sbjct: 64  QRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIE 123

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           V+ V+  D +E   AI   TK V+ E+  NP   + DI  IAE+AHAHG  L+VDN+  +
Sbjct: 124 VRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFAT 183

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAK------------ 222
           P L RP++ GADIV+HSATK+I GH   + GV+   G       R               
Sbjct: 184 PYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLV 243

Query: 223 ------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA 269
                    F+  A        G+ L+PF+ ++ L+G++T++LR+E+  +NA K+AEFL 
Sbjct: 244 FTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLE 303

Query: 270 SHPRVKKVNYAGLPEHPGHELHYSQA-KGAGSVLSF-LTGSLALSKHVVETTKYFSITVS 327
           +HP+V  VNY GL  HP H L      KG G+VLSF + G     K  ++  K  S   +
Sbjct: 304 AHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLAN 363

Query: 328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
            G  KSL+  P   +H  +  E +   G+T  L+R+SVGIE+++D+I+DL++AL
Sbjct: 364 VGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGIENIDDIIADLEQAL 417

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  289 bits (741), Expect = 3e-95
 Identities = 148/361 (40%), Positives = 217/361 (60%), Gaps = 2/361 (0%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           Y A+  P+Y +  +  P+  E   YDYTRSGNP R  LE  L++L+    A+    G +A
Sbjct: 21  YHAVVPPIYLSTNYGFPAFGEVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSA 80

Query: 83  LAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 141
           L   V+ LLG  + IVA  D YGGT RL +    K    V+ V+  D   + +A+    K
Sbjct: 81  LNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPK 140

Query: 142 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201
           L+ +E+P+NP  ++ DI ++ + A A GAL+ VDN+ ++PVL +PLELGAD V+HS TK+
Sbjct: 141 LILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKY 200

Query: 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 261
           I GHSDV+ GVL  K +  A+EL +  N  G+   PFD ++ LRG++T+  R+   +++A
Sbjct: 201 INGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGARMRVHEESA 260

Query: 262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTK 320
           Q+I  +L +   V  + +  LPEHPGHE+   Q  G GS+LSF   GS    K  V+   
Sbjct: 261 QQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALA 320

Query: 321 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 380
            FS+  S G V+SLI  P  M+H ++  E     G+++ L+R+SVG+ED  DLI+DLD+A
Sbjct: 321 LFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQA 380

Query: 381 L 381
            
Sbjct: 381 F 381

Length = 388

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  283 bits (726), Expect = 8e-93
 Identities = 148/361 (40%), Positives = 214/361 (59%), Gaps = 2/361 (0%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           YGA++ P+  ++ F          YDYTRSGNPTRD L   LA+L+     +   +GM A
Sbjct: 28  YGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGA 87

Query: 83  LAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 141
           +  V + LL  G+ +V   D YGG+ RL + +  K    +   +  D   +A A+    K
Sbjct: 88  INLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPK 147

Query: 142 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201
           LV +E+P+NP  +I D+R + E AH  GAL +VDN+ +SP L +PLE GAD+V+HS TK+
Sbjct: 148 LVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKY 207

Query: 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 261
           I GHSDV+ G +  +   L ++L +  NA G   +PFD ++ LRG++T+  R+   Q+NA
Sbjct: 208 INGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQENA 267

Query: 262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTK 320
             IA  L  H  V +V Y GL  HPGH L   Q KG G++LSF L G  A  +  V+  +
Sbjct: 268 DAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLR 327

Query: 321 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 380
           YF++  S G V+SLI+ P  M+HA++  E R A G+++ L+R+SVGIE   DL+ DL   
Sbjct: 328 YFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIESAEDLLIDLRAG 387

Query: 381 L 381
           L
Sbjct: 388 L 388

Length = 405

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  276 bits (708), Expect = 1e-89
 Identities = 150/428 (35%), Positives = 213/428 (49%), Gaps = 46/428 (10%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           M     PG  TL ++     DP  GA + P++ T +F    +         E   + Y+R
Sbjct: 1   MPGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSR 60

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLL 110
             NPT   LE  +A L+    A+   SG AAL  A+  L+G G  IVA   LYGG+  LL
Sbjct: 61  ISNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLL 120

Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
                + G+    V   D+D   +AI P T+L++ E+  NP  ++ DI  +A +AH  G 
Sbjct: 121 HYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGV 180

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---------- 220
            LLVD++  +P L RP E GAD+V HSATKF+ GH   + GVL V G R           
Sbjct: 181 PLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVL-VDGGRFDWEASGKFPE 239

Query: 221 AKELY----------------FLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQ 257
             E Y                FL  A        G+ L+P + W  L+G++T+ LR+E+ 
Sbjct: 240 LTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERH 299

Query: 258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS-QAKGAGSVLSF-LTGSLALSKHV 315
             N +K+  FLASHP V +V +  L  HP H L      +GAGSV SF L G  A  +  
Sbjct: 300 VANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKF 359

Query: 316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 375
           +E+ K FS   + G  +SL+  P   +H  +      A G+ E  +R+S+G+ED +DLI 
Sbjct: 360 IESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLEDADDLID 419

Query: 376 DLDKALRT 383
           DL +AL+ 
Sbjct: 420 DLKRALKA 427

Length = 433

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  273 bits (699), Expect = 4e-89
 Identities = 139/365 (38%), Positives = 218/365 (59%), Gaps = 6/365 (1%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
           +  GA++TP+YQT  +  P   E   Y Y+R  NPT   L   + +L+ A+  + F+SGM
Sbjct: 14  EATGAITTPIYQTTAYHYP---EGEKYRYSREANPTVLELTKKIVELENAEMGVAFSSGM 70

Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
            A++     LL  G  ++   D++G + R  +      GV V   N    + +  A    
Sbjct: 71  GAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKR 130

Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
             +V+VE+ TNP  ++ DI +++++   +G++L+VD +  +P+  +PLELGADIV+HSA+
Sbjct: 131 YDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSAS 190

Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 259
           KF+AGH+DV+AG+ A  G+ L   +  ++   G+ L P   ++ LRG+KT+ +R++    
Sbjct: 191 KFLAGHNDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMDVINR 249

Query: 260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVET 318
           NA++IAEFL  HP+V KV Y GL  H  +E+     KG G VLSF + G    +  V+++
Sbjct: 250 NAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKS 309

Query: 319 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 378
            K      + G V S+IS P  MSH ++ +E R+  G+T+ L+R+SVGIEDVNDLI DLD
Sbjct: 310 LKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLD 369

Query: 379 KALRT 383
           +AL T
Sbjct: 370 RALST 374

Length = 376

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  268 bits (686), Expect = 3e-86
 Identities = 147/403 (36%), Positives = 213/403 (52%), Gaps = 46/403 (11%)

Query: 24  GALSTPLYQTATF----KQPSA-----TENGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
            A + P+YQT ++       +A      E G   YTR  NPT+D +E  +A L+    AL
Sbjct: 30  NARALPIYQTTSYTFDDTDHAAALFGLAEPGNI-YTRIMNPTQDVVEQRIAALEGGVAAL 88

Query: 75  CFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLDEV 132
              SG AA   A+ +L G G+ IV+   LYGGT  L     PK G+ V  V +  DLD  
Sbjct: 89  LLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAW 148

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
            +A+ P TK  + E+ +NP+  + DI  +AE+AH  G  L+VDN+I +P L RPLE GAD
Sbjct: 149 RAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGAD 208

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERL-------------------------------A 221
           IV+HSATK++ GH   +AGV+ V G                                   
Sbjct: 209 IVVHSATKYLGGHGTAIAGVI-VDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYAL 267

Query: 222 KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 281
           K    L    GS ++PF+ ++  +G++T++LR+E+   NAQ++AEFL +   V  VNYAG
Sbjct: 268 KARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAG 327

Query: 282 LPEHPGHELHYSQA-KGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC 339
           LP  P +E     A KG G+VLSF L G +   K  V      S   + G V+SL+  P 
Sbjct: 328 LPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPA 387

Query: 340 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
             +H+ +  E + A G+T  LVR++VGIE ++D+++DL+    
Sbjct: 388 STTHSQLTPEEQLATGVTPGLVRLAVGIEGIDDILADLEAGFA 430

Length = 436

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  266 bits (683), Expect = 5e-86
 Identities = 154/420 (36%), Positives = 216/420 (51%), Gaps = 46/420 (10%)

Query: 7   PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPY--------DYTRSGNPTR 57
           PG +TL ++   + DP  GA +TP+YQT +F    A               YTR  NPT 
Sbjct: 6   PGFATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTN 65

Query: 58  DALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPK 116
             LE  +A L+    AL   SG AA   V H LL  G+E +A   LYGG+          
Sbjct: 66  AVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKS 125

Query: 117 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
            G  V+  +  D      AI P TK +++ES  NP   + DI  IAE+AH  G  L+VDN
Sbjct: 126 FGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDN 185

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA---------------------- 214
           ++ SP L RP+E GADIV+HS TKF+ GH + M G++                       
Sbjct: 186 TLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPE 245

Query: 215 VKGERLAK---ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI 264
             G  L +      F   A        G  ++PF+ ++ L G++T+ LR+++  DNA  +
Sbjct: 246 YHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAV 305

Query: 265 AEFLASHPRVKKVNYAGLPEHPGHELH--YSQAKGAGSVLSF-LTGSLALSKHVVETTKY 321
           AE+L  HP+V  VNYAGLP+ P H L   YS  KGAG+V +F L G       +V + K 
Sbjct: 306 AEWLKGHPKVSWVNYAGLPDDPYHALAQKYS-PKGAGAVFTFGLKGGYEAGVKLVSSLKL 364

Query: 322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
           FS   + G  +SL+  P   +H  +  E + A G   D+VR+S+GIEDV+D+I+DL++AL
Sbjct: 365 FSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGIEDVDDIIADLEQAL 424

Length = 427

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  262 bits (671), Expect = 3e-84
 Identities = 151/427 (35%), Positives = 229/427 (53%), Gaps = 46/427 (10%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTAT--FKQP-------SATENGPYDYT 50
           MS E    + TL ++   E DP  G+ + P+YQT +  F+         S  E G   YT
Sbjct: 1   MSEERTFRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFG-NIYT 59

Query: 51  RSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
           R  NPT D  E  +A L+    AL  +SG AA+  ++ ++   G+EIV+   LYGGT  L
Sbjct: 60  RIMNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNL 119

Query: 110 LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169
            +   PK G+ VK V+  D +   +AI   TK ++ E+  NP+  + DI  +A +AH HG
Sbjct: 120 FAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHG 179

Query: 170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------------ 217
             L+VDN+  SP L RP+E GADIV+HSATKFI GH   + GV+   G            
Sbjct: 180 IPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPG 239

Query: 218 --------------ERLAKELYFLQ------NAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
                         + + +  Y  +         G+ L+PF+ ++ L+G++T+ LR+E+ 
Sbjct: 240 LTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERH 299

Query: 258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ-AKGAGSVLSF-LTGSLALSKHV 315
            +NA  +A+FL  H  V+ V+Y GLP HP +EL      KG G++L+F + G +   K +
Sbjct: 300 SENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKL 359

Query: 316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 375
           +++ K FS   + G  KSLI  P   +H  +  E + A G+T  LVR+SVG E ++D++ 
Sbjct: 360 IDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGTEAIDDILD 419

Query: 376 DLDKALR 382
           DL +A+R
Sbjct: 420 DLRQAIR 426

Length = 431

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  259 bits (665), Expect = 4e-84
 Identities = 130/367 (35%), Positives = 182/367 (49%), Gaps = 16/367 (4%)

Query: 19  EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS 78
           E  P   +       A +        GP  Y R+ NPT  ALE+ L +L+    AL F S
Sbjct: 15  EAVPGEPVLPGPVFAAPYHLSPGEPTGPDTYGRASNPTWRALEAALGELE-GAEALVFPS 73

Query: 79  GMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG 137
           GMAA+ AV   LL  G+ +V   D Y     L        GV V+   T  +   A A  
Sbjct: 74  GMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGM---AEAAL 130

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 197
               LV  E+P+NP   +CD+  +A  AHA GALL+VDN+  +P+  RPLELGAD+V+ S
Sbjct: 131 AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVAS 190

Query: 198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
            TK + GHSD++ G +A +   L   +   +   G+   PF+ W+  R + T+ LR  +Q
Sbjct: 191 DTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQ 250

Query: 258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE 317
             NA  +AE LA HP V+ V Y GLP  P HE+   Q +  G ++SF     A ++  V 
Sbjct: 251 CANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVA 310

Query: 318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 377
            ++      SFG V           H S     R    + E  VR+S GIED +DL++DL
Sbjct: 311 ASRLVVAATSFGGV-----------HTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADL 359

Query: 378 DKALRTG 384
           ++AL   
Sbjct: 360 ERALDAL 366

Length = 366

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  260 bits (665), Expect = 1e-83
 Identities = 134/370 (36%), Positives = 206/370 (55%), Gaps = 14/370 (3%)

Query: 27  STPLYQTATFKQPSATE-----NGPYD---YTRSGNPTRDALESLLAKLDKADRALCFTS 78
           +  LY T+ +   SA        G  D   Y+R GNPT    E  L  ++ A+      S
Sbjct: 34  AEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFATAS 93

Query: 79  GMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG 137
           GM+A+  A+  LLG G+ +VA   L+G    + + + P+ GV    V+  DL +   A+ 
Sbjct: 94  GMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALS 153

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 197
             T+ V+ E+P+NP Q + DI  ++E+AHA GA +++DN   +P+L R L LGAD+V++S
Sbjct: 154 VPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYS 213

Query: 198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
            TK I G   V+ G +    E +   +  L    G  L+ F+ W+ L+G++T+ALRV   
Sbjct: 214 GTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLALRVRHS 273

Query: 258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH-- 314
             +A +IAEFL  HP V+ V Y  LP HP ++L   Q  G G+V++F L      +K   
Sbjct: 274 NASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRA 333

Query: 315 --VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND 372
             V++  +   I+ + G  KSLI+ P   +H ++  E R A GL + +VR+SVG+ED +D
Sbjct: 334 FEVLDKLRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDD 393

Query: 373 LISDLDKALR 382
           LI+DLD+AL 
Sbjct: 394 LIADLDRALG 403

Length = 403

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  256 bits (657), Expect = 2e-82
 Identities = 130/374 (34%), Positives = 206/374 (55%), Gaps = 14/374 (3%)

Query: 22  PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRA 73
            +G  S  L+ T  F   +A         E+  + Y+R  NPT D  E  +  L+ A+ A
Sbjct: 24  QFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDA 83

Query: 74  LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV 132
               SGMAA+ AA+   +  G+ +VA   L+G    ++  + P+ G+    V+  DLD  
Sbjct: 84  RATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNW 143

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
             A+ P TK+ ++ESPTNP  ++ DI  +A++A+  GA L+VDN   +P+  +PLELGA 
Sbjct: 144 EKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAH 203

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--YFLQNAEGSGLAPFDCWICLRGVKTM 250
           IV++SATK I G    + GV+      + + L  YF     G  L+PF+ W  L+G++T+
Sbjct: 204 IVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT--GPSLSPFNAWTLLKGLETL 261

Query: 251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSL 309
            +RV +Q ++A  IA+FLA HP+V +V Y G  +HP  ++   Q  G  ++++F L G  
Sbjct: 262 PVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGK 321

Query: 310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED 369
             +   +   K   I+ + G  KSLI+ P   +H ++  E R   G++E  +R+S G+ED
Sbjct: 322 EAAFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLED 381

Query: 370 VNDLISDLDKALRT 383
            +DLI DL  AL+ 
Sbjct: 382 TDDLIEDLAAALKK 395

Length = 398

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  255 bits (653), Expect = 5e-82
 Identities = 134/376 (35%), Positives = 208/376 (55%), Gaps = 29/376 (7%)

Query: 21  DP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKAD 71
           DP +G ++TP+++T+TF  P++        T   PY YTR GNPT  A E   A L+ A+
Sbjct: 21  DPRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAE 80

Query: 72  RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK-----RVN 125
            AL F+SGM A+ +A+  L+  G+ I++  DLYG T    ++V    G+ V      R+N
Sbjct: 81  HALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLN 140

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185
           + D D           L++ ES TNP  ++ DI+ ++     H   ++VD +  SP    
Sbjct: 141 SLDFDPSN------YDLIYAESITNPTLKVPDIKNVSS--FCHENDVIVDATFASPYNQN 192

Query: 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245
           PL+LGAD+V+HSATK+I+GHSDV+ GV     + +   L   +   GS   P   ++ LR
Sbjct: 193 PLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALR 252

Query: 246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL 305
           G+KT+ LR+EK   N  ++A FL    ++  V Y      P  E+     +G G +LSF 
Sbjct: 253 GLKTLGLRMEKHNKNGMELARFLRDSKKISNVYY------PDTEIGKKVLRGFGGMLSFE 306

Query: 306 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 365
             S+      +   +   +  S G V+SLI++P   SH+S+  E R+  G++++LVR S+
Sbjct: 307 LRSMEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSI 366

Query: 366 GIEDVNDLISDLDKAL 381
           GIED++DLI D++ AL
Sbjct: 367 GIEDIDDLIKDIENAL 382

Length = 384

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  248 bits (636), Expect = 6e-79
 Identities = 134/412 (32%), Positives = 223/412 (54%), Gaps = 44/412 (10%)

Query: 10  STLLMNFSNEFDPY---GALSTPLYQTATF------------------KQPSATENGPYD 48
            T ++N+   +DP    GA+  P++ T+TF                  K+P A E     
Sbjct: 19  ETQMLNYG--YDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLV 76

Query: 49  YTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD 107
           Y+R  +P  + +E  LA  + A+ A  F+SGM+A+A      +  G+ I+    LYGGT+
Sbjct: 77  YSRFNHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTE 136

Query: 108 RLLSRVTPKTGV----VVKRVNTCDLDEV---ASAIGPWTKLVWVESPTNPRQQICDI-- 158
            LL++     GV        ++   +      A+A G    L+ +E+P NP   + D+  
Sbjct: 137 TLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGR-VSLILIETPANPTNSLVDVAA 195

Query: 159 -RKIAEM---AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA 214
            R++A+       H  ++  DN+++ PV  +PLE GAD+ ++S TK++ GHSD++AG  A
Sbjct: 196 VRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAG--A 253

Query: 215 VKGER-LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR 273
           V G + L +++  L++A G+ L P  CW+  R ++T+ LR+E+   NA+ +AEFL  HP+
Sbjct: 254 VLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPK 313

Query: 274 VKKVNYAGL--PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGS 330
           V+K++Y     P+     ++  Q  GAGS  SF + G  A +   +   + F + VS G 
Sbjct: 314 VEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGG 373

Query: 331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
            +SL S P  M+H+ +P +VR+  G+ E  +R+S+GIE  +DLI+DL +AL 
Sbjct: 374 TESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIEHPDDLIADLAQALD 425

Length = 427

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  237 bits (605), Expect = 2e-74
 Identities = 145/404 (35%), Positives = 216/404 (53%), Gaps = 50/404 (12%)

Query: 25  ALSTPLYQTATFKQPSATENGP--YD-------YTRSGNPTRDALESLLAKLDKADRALC 75
           A++ P+YQT ++     T++G   +D       YTR  NPT D LE  +A L+    AL 
Sbjct: 20  AVAVPIYQTTSYAFDD-TQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALA 78

Query: 76  FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134
             SGMAA+  A+  +   G+ IV+   LYGGT  LL+   P+ G+  +     D+  + +
Sbjct: 79  VASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEA 138

Query: 135 AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
            I   TK V+ ES  NP   I DI+ +A+ AH HG  L+VDN++ +PVL RP E GADIV
Sbjct: 139 LIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIV 198

Query: 195 MHSATKFIAGHSDVMAGVLAVKG---------------------------ERLAKELYF- 226
           +HS TK+I GH   + G++   G                           E      +  
Sbjct: 199 VHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIG 258

Query: 227 ------LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 280
                 L+N  G+ L+PF+ ++ L+G++T+ALR+E+  +NA K+A +L  HP+V  V YA
Sbjct: 259 RCRVVPLRNM-GAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYA 317

Query: 281 GLPEHPGHEL--HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISM 337
           GLP+HP HEL   Y   K A S+LSF + G  A     ++  K     V+ G  KSL   
Sbjct: 318 GLPDHPEHELARRYMGGKPA-SILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACH 376

Query: 338 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
           P   +H  +  E  +  G++ D+VR+S+GIE ++D+I+DL +AL
Sbjct: 377 PASTTHRQLNDEELEKAGVSRDMVRLSIGIEHIDDIIADLAQAL 420

Length = 425

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  228 bits (584), Expect = 1e-71
 Identities = 131/385 (34%), Positives = 211/385 (54%), Gaps = 37/385 (9%)

Query: 17  SNEFDPYGALSTPLYQTATFKQPS--------ATENGPYDYTRSGNPTRDALESLLAKLD 68
            +E + + A+  P++QT+ F   S        A E     Y+R  NPT  A E +LAKL+
Sbjct: 17  HDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLE 76

Query: 69  KADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
            A+ A  F SGMAA+++ V   +  G+ IVA   +Y    RL   +  + GV V  V+  
Sbjct: 77  GAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR 136

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
           D + VA A+ P  KL+++ESPT+   ++ D+  +A +A  HG + ++DNS  SPV  RP+
Sbjct: 137 DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI 195

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-----GSGLAPFDCWI 242
            LG D+V+HSA+K++ GHSD +AGV+A   E +A+      NAE     G+ L+PF+ W+
Sbjct: 196 TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIAR-----INAEAYPYLGAKLSPFEAWL 250

Query: 243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL 302
            LRG++T+ LR++  + +A +IA  L +HP V++V +  L  HP   L      G   + 
Sbjct: 251 LLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLS-----GTSGLF 305

Query: 303 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR------QARGL 356
           SF+       +   +  K F + VS+G  +SL+ +P     A + ++ +         G+
Sbjct: 306 SFIFREGIDVRAFADALKLFRLGVSWGGHESLV-VP-----AEVVLQQKAQPNSAARFGV 359

Query: 357 TEDLVRISVGIEDVNDLISDLDKAL 381
           +   VR+ VG+E    L +DL++AL
Sbjct: 360 SPRSVRLHVGLEGTEALWADLEQAL 384

Length = 389

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  228 bits (584), Expect = 1e-71
 Identities = 125/404 (30%), Positives = 196/404 (48%), Gaps = 57/404 (14%)

Query: 23  YGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
           +GA+  P++ + T+    A +           + Y R G PT  ALE+ + K++     +
Sbjct: 7   HGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTV 66

Query: 75  CFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA 133
           CF +GMAA+AAV   LL  G+ +V+   L+G T+ L   +    GV V  V+  D+  VA
Sbjct: 67  CFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLR-GLGVEVTMVDATDVQNVA 125

Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADI 193
           +AI P T++V+VE+  NP  Q+ D+  I  +    G L +VDN++ SP L RP ++GA +
Sbjct: 126 AAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASL 185

Query: 194 VMHSATKFIAGHSDVMAGVLAVKGE----RLA--KELYFLQNAEGSGLAPF------DCW 241
           V++S +K+IAGH + + G +   G             Y   + +  GL         D  
Sbjct: 186 VINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMG 245

Query: 242 ICLR---------GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
             L          G +T+ALRV++   NA  +A+FL +HP+V +V Y GL  HP H    
Sbjct: 246 ATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARAT 305

Query: 293 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS---FGSVKSLISMPCFMSHASIPV- 348
              +  G +LSF    LA      +      + +     G  ++L+          IPV 
Sbjct: 306 ELFRHYGGLLSF---ELADGIDCFDFLNRLKLVIKATHLGDTRTLV----------IPVA 352

Query: 349 ---------EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 383
                    E R + G+ + L+R+SVGIED  DLI+D ++AL  
Sbjct: 353 PTIYYEMGAERRASMGIADSLIRVSVGIEDEADLIADFEQALDA 396

Length = 397

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  228 bits (582), Expect = 8e-71
 Identities = 145/407 (35%), Positives = 216/407 (53%), Gaps = 49/407 (12%)

Query: 22  PYGALSTPLYQTATF--------KQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADR 72
              A + P+YQT ++        KQ  A E+ GP  Y+R  NPT +ALE+ +A L+    
Sbjct: 28  DTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPI-YSRLTNPTVEALENRIASLEGGVH 86

Query: 73  ALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLD 130
           A+ F SG AA  AA+ +L G G+ IV    LYGGT+ L      + G+ V  V N  D +
Sbjct: 87  AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPE 146

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG 190
              +A+ P TK  + E+  NP+  + DI  +AE+AH +   L+VDN+I +  L RPLELG
Sbjct: 147 SWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELG 206

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAKEL--YF---------LQNAE-- 231
           AD+V+ S TKF  G+   + GVL   G      ER  K +  YF         L+ A+  
Sbjct: 207 ADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLG 266

Query: 232 ----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK 275
                           G+ L+PF+ W+  +G+ T++LR+E+  +NA K+AEFL +H +V 
Sbjct: 267 APAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVA 326

Query: 276 KVNYAGLPEHPGHELHYSQA-KGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKS 333
           KVN+AGL + P +        K  GSVLSF + G    +   ++  K  S   + G V+S
Sbjct: 327 KVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRS 386

Query: 334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 380
           L+  P   +H+          G+T+  VR+SVGIED++D+I+DL+  
Sbjct: 387 LVVHPATTTHSQSDEAGLARAGITQATVRLSVGIEDIDDIIADLEGG 433

Length = 437

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score =  189 bits (481), Expect = 2e-56
 Identities = 118/397 (29%), Positives = 194/397 (48%), Gaps = 26/397 (6%)

Query: 1   MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSA----TENGPYDYTRSGNP 55
               E+ G++T L +  N+  D +G ++ P+   +T   P A    T    Y Y   G P
Sbjct: 5   QLKTEKAGINTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTP 64

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALAAVT----HLLGTGEEIVAGDDLYGGTDRLLS 111
           T DAL   +  L+ +   +   SG   LAAVT      L  G+  +  D +Y  T     
Sbjct: 65  TTDALCKAIDALEGSAGTILVPSG---LAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCD 121

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGAL 171
            +  + GV V+  +      +A  + P TK+V  E+P +   ++ DI  IAE AH HGA+
Sbjct: 122 TMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAI 181

Query: 172 LLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE 231
           +++DN+  +P+  RPL+ G DI +H+ATK+ +GHSD++ G ++   E+   +L       
Sbjct: 182 VMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTL 240

Query: 232 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 291
           G    P D +  LRG++TM +R+E  + +A +IA +L   P V +V +  LP  PGHE+ 
Sbjct: 241 GLCAGPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIW 300

Query: 292 YSQAKGAGSVLSF-LTGSLALSKH----VVETTKYFSITVSFGSVKSLISMPCFMSHASI 346
                GA  + SF L       K      ++  + F +  S+G  +SL        H  +
Sbjct: 301 KRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESL------ALHVKL 354

Query: 347 PVEVRQARGLTED-LVRISVGIEDVNDLISDLDKALR 382
             +   A+      ++R+ +G+EDV DL +DL++   
Sbjct: 355 -GDRTVAKAPYAGPVIRLQIGLEDVPDLKADLERGFA 390

Length = 395

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  184 bits (469), Expect = 9e-55
 Identities = 101/369 (27%), Positives = 183/369 (49%), Gaps = 14/369 (3%)

Query: 17  SNEFDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
                  G+++ PL + +T    S        G   Y R G  T  AL+  + +L+    
Sbjct: 8   RQPRFSQGSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAG 67

Query: 73  ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
              + SG+AA+  ++   +  G+ ++  D  Y  T      V  + GV +   +    ++
Sbjct: 68  CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGED 127

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           +A+ I P TK++++E+P++   +I DI  IA+ A   G ++++DN+  + +L +PLE G 
Sbjct: 128 IATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGV 187

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251
           DI + + TK++ GHSD+M G   V   R   +L       G  +   D +  LRG++T+ 
Sbjct: 188 DISIQAGTKYLVGHSDIMIGT-VVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG 246

Query: 252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL 311
           +R+++ Q+++  IA++L+  P V +V +  LP  PGHE       G+  + SF+   L  
Sbjct: 247 VRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT- 305

Query: 312 SKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE 368
            K V   ++  + F +  S+G  +SL  +         P      R L   L+R+ +G+E
Sbjct: 306 QKQVHAFLDHLQLFGLGYSWGGYESLA-LCNQPELGHRPN---IKRNLEGPLIRVHIGLE 361

Query: 369 DVNDLISDL 377
           +V+DL +DL
Sbjct: 362 NVDDLKADL 370

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  183 bits (466), Expect = 8e-54
 Identities = 122/399 (30%), Positives = 199/399 (49%), Gaps = 43/399 (10%)

Query: 29  PLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
           PLYQ+ T+K  ++         E   Y YTR GNPT  A E  LA+L+    A+   SG 
Sbjct: 27  PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86

Query: 81  AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGP 138
           AA+  AV ++  +G+ ++    +YGGT  L      K G+ V   N     DE+ +    
Sbjct: 87  AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146

Query: 139 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 198
            TKLV+ ES  NP   + + ++ ++ A       +VDN++ +P L +  E GA+I++HS 
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHST 206

Query: 199 TKFIAGHSDVMAGVLAVKGE-------------------------------RLAKELYFL 227
           TK+I GH+  + G++   G                                 + K    L
Sbjct: 207 TKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQL 266

Query: 228 QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 287
               G+ ++PF+ +I   G++T+ LR+E+  +NA  +A++LA H R++ VNY GL  +  
Sbjct: 267 LRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNEN 326

Query: 288 HELHYSQ-AKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS 345
           + L      KGA  VL+F + G L  +K  +   K  ++       ++ +  P   +H  
Sbjct: 327 YSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQ 386

Query: 346 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG 384
           +  E ++  G+T DL+R+SVGIEDV+D+I+DL+ AL  G
Sbjct: 387 LSAEDQRLAGVTSDLIRLSVGIEDVSDIIADLEAALVGG 425

Length = 432

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  179 bits (457), Expect = 8e-53
 Identities = 102/373 (27%), Positives = 176/373 (47%), Gaps = 26/373 (6%)

Query: 25  ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF 76
           +  TP+ + +T   P            +  + Y     PT  AL   LA+++    AL  
Sbjct: 27  SFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQ 86

Query: 77  TSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
            SG+AA++ V   L+  G++++  D+ YG        +    G+ V+  +      +A  
Sbjct: 87  PSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADL 146

Query: 136 IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVM 195
           I P T+L+W+E+P +   ++ D+  I   A A G +  +DN+  + +  +P E G DI +
Sbjct: 147 IQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISV 206

Query: 196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
            + TK+ +G SDV+ G        L  +L   +   G G++  DC + LRG+ ++ +R+ 
Sbjct: 207 QALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVRLA 266

Query: 256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV 315
               +A ++AE+L + P +  V +  LP+ PGH        GAG + S +         V
Sbjct: 267 AHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQV 326

Query: 316 ---VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED----LVRISVGIE 368
              VE  + F+I  S+G   SL          ++P +V   R         LVR+ +G+E
Sbjct: 327 DAFVEALELFAIGWSWGGACSL----------AMPYDVASMRTAKWPHRGTLVRLYIGLE 376

Query: 369 DVNDLISDLDKAL 381
           D  DLI+DL++AL
Sbjct: 377 DEADLIADLEQAL 389

Length = 394

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score =  172 bits (437), Expect = 6e-50
 Identities = 106/348 (30%), Positives = 183/348 (52%), Gaps = 22/348 (6%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G PT  A ++ + +L+       + SG AA++ A+   L  G+ ++  D  
Sbjct: 50  NGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSC 109

Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  T  L  ++    G+     +    + +   I P TK++++ESP +   ++ D+  ++
Sbjct: 110 YEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLS 169

Query: 163 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
            +AH H  ++++DN+  SP+ SRP E+G DI + +ATK+I GHSDVM G  A      A 
Sbjct: 170 RIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGT-AT-----AN 223

Query: 223 ELYFLQNAEGSGL-----APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV 277
           E ++ Q  E S L     +P D ++ +RG++T+ +R+ + + NA K+A +LA+ P V  V
Sbjct: 224 EKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHV 283

Query: 278 NYAGLPEHPGHELHYSQAKGAGSVLSFL--TGSLALSKHVVETTKYFSITVSFGSVKSLI 335
            +      PGHE       G+  + SF+   G       +VE  ++F +  S+G  +SLI
Sbjct: 284 RHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLI 343

Query: 336 SMPCFMSHASIPVEVRQARG--LTEDLVRISVGIEDVNDLISDLDKAL 381
                +    I  ++R A     ++ L+R+ +G+EDV+DLI+DL+   
Sbjct: 344 -----LGVFGIN-KLRTATNWDFSKPLIRLHIGLEDVDDLIADLEAGF 385

Length = 394

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score =  169 bits (431), Expect = 7e-49
 Identities = 118/389 (30%), Positives = 198/389 (50%), Gaps = 46/389 (11%)

Query: 13  LMNFSNEFDPYGALSTPLYQTATF--KQPSA----------TENGPYDYTRSGNPTRDAL 60
           L +  +EF  +G ++  +  +ATF   +P             +   Y Y+R  NPT   L
Sbjct: 22  LASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNL 81

Query: 61  ESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-G 118
              +A L+  + A C  SGM+A+++V   L  +G  +VA + LYGGT  LL+   P+   
Sbjct: 82  GRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN 141

Query: 119 VVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           +    V+  DL+ V  A+ P  TK+++ ES +NP   + DI ++A +AH  G  ++VDN+
Sbjct: 142 ITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNT 201

Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLA 236
             +P++  P  LGAD+V+HS +KFI+G +D++AG  AV G   L   +  L +     L 
Sbjct: 202 -FAPMVLSPARLGADVVVHSISKFISGGADIIAG--AVCGPAELVNSMMDLHHGALMLLG 258

Query: 237 P-------FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK----KVNYAGLPEH 285
           P       F+  +  R +  ++LR+++    A + A+      R+K    KV Y GL +H
Sbjct: 259 PTMNPKVAFE--LSER-LPHLSLRMKEHCRRAMEYAK------RMKELGLKVIYPGLEDH 309

Query: 286 PGHELHYSQAK---GAGSVLSFLTGSLA----LSKHVVETTKYFSITVSFGSVKSLISMP 338
           P H L  S A    G G +L     +      L +++  +T++  + VS G  ++L+S  
Sbjct: 310 PQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCS 369

Query: 339 CFMSHASIPVEVRQARGLTEDLVRISVGI 367
              + + +  E + A G++  LVR+SVG 
Sbjct: 370 GSSTSSELDPEEKAAAGISPGLVRMSVGY 398

Length = 418

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score =  145 bits (367), Expect = 1e-39
 Identities = 103/352 (29%), Positives = 178/352 (50%), Gaps = 23/352 (6%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+  + +L+       +  G AA+A A+   +  G+ ++     
Sbjct: 51  NGELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTA 110

Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI- 161
           Y  T    S++  K GV     +     ++A  I P TK+V++ESP +   ++ D+  I 
Sbjct: 111 YEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIV 170

Query: 162 -AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
            A  +    A++++DN+  + VL + L+ G DI + + TK++ GHSD M G  AV   R 
Sbjct: 171 AAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGT-AVANARC 229

Query: 221 AKELYFLQNAEGSG-LAPFD-CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 278
            ++L   +N+   G +   D  ++  RG++T+ +R+ + ++++ K+AE+LA HP V +VN
Sbjct: 230 WEQLR--ENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVN 287

Query: 279 YAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSK--HVVETTKYFSITVSFGSVKSLI 335
           +  LP   GHE       G+  + SF L   L   +  + ++    FS+  S+G  +SLI
Sbjct: 288 HPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLI 347

Query: 336 SMPCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDKALR 382
                   A+ P E+   R       T  L+R+ +G+EDV+DLI+DL     
Sbjct: 348 L-------ANQPEEIAAIRPAGEVDFTGTLIRLHIGLEDVDDLIADLAAGFA 392

Length = 395

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 21/208 (10%)

Query: 30  LYQTATFKQPSATENGPYDYTRSGNPTR--DALESLLAKLDKADRA--LCFTSGMA-ALA 84
           L   A + +          +T +   T   +A    +A+   AD +  + FT G   AL 
Sbjct: 39  LDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALN 98

Query: 85  AVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASA 135
            V   LG     G+EIV  D  +         +  +TG  V+ +        DLD +   
Sbjct: 99  LVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKL 158

Query: 136 IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---ELGAD 192
           I P TKLV +   +N    +  +++IAE+AH HGAL+LVD +  +  L  P+   ELG D
Sbjct: 159 ITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHL--PIDVQELGCD 216

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERL 220
            +  S  K++ G + +  GVL V+ E L
Sbjct: 217 FLAFSGHKWLLGPTGI--GVLYVRKELL 242

Length = 405

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 21/175 (12%)

Query: 57  RDALESLLAKL--DKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRV 113
            + LE  LA+L     D+A+   SG  A  A    LLG G+E++   + +G         
Sbjct: 2   LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSR---YWVA 58

Query: 114 TPKTGVVVKRVNTCD--------LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165
               G     V   D                 P   L+ +   T     +  +++I ++A
Sbjct: 59  AELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIA 118

Query: 166 HAHGALLLVDNS----IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK 216
             +G LLLVD +              E GAD+V  S  K + G      GV+ VK
Sbjct: 119 KEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG---EGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily

 Score = 59.4 bits (144), Expect = 9e-10
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 13/192 (6%)

Query: 33  TATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKADRALCFTSGMAALA-----AV 86
           +A   + +A   G Y+ +R +     DA E++   L+     + F +   +L      A+
Sbjct: 38  SAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAI 97

Query: 87  THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK----RVNTCDLDE--VASAIGPWT 140
           +   G G+E++     +        +   + G  VK       T +L    +AS + P T
Sbjct: 98  SRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRT 157

Query: 141 KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSAT 199
           +LV V + +N    I D+  I E+ HA GAL++VD    +P  L      GAD +  SA 
Sbjct: 158 RLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAY 217

Query: 200 KFIAGHSDVMAG 211
           KF   H  ++ G
Sbjct: 218 KFFGPHMGILWG 229

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score = 56.3 bits (137), Expect = 8e-09
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 28/131 (21%)

Query: 59  ALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL-------- 109
           ALE  LA+   A+RAL F+SG  A LA +T L G G+ IV+        D+L        
Sbjct: 88  ALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVS--------DKLNHASLIDG 139

Query: 110 --LSRVTPKTGVVVKRVNTCDLDEVASAIGPWT---KLVWVESPTNPRQQICDIRKIAEM 164
             LSR        V+R    D+D + + +  W     L+  ES  +    +  + ++  +
Sbjct: 140 ARLSRAR------VRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVAL 193

Query: 165 AHAHGALLLVD 175
           A  HGA LLVD
Sbjct: 194 ARRHGAWLLVD 204

Length = 385

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 48/241 (19%)

Query: 52  SGN-PTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRL 109
           SG     + LE  LA+    + AL F+SG AA    ++ L G G+ I++        D L
Sbjct: 42  SGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIIS--------DSL 93

Query: 110 ----------LSRVTPKTGVVVKRVNTCDLDEV-ASAIGPWT-KLVWVESPTNPRQQICD 157
                     LS        + K  +  DL+++   A  P+  KL+  E   +    I  
Sbjct: 94  NHASIIDGIRLSGAKK---RIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP 150

Query: 158 IRKIAEMAHAHGALLLVDNS----IMSP----VLSRPLELGA-DIVMHSATKFIAGHSDV 208
           + ++ ++A  +GA+L VD +    +  P    V          DI+M +  K        
Sbjct: 151 LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG----A 206

Query: 209 MAGVLAVKGERLAKELYFLQNAEG----SGLAPFD-CWI--CLRGVKTMALRVEKQQDNA 261
           + G   + G +   + Y    A G    + L P         L  ++    R E+ Q+N 
Sbjct: 207 VGG--YIAGSKELID-YLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENV 263

Query: 262 Q 262
           +
Sbjct: 264 R 264

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 21/144 (14%)

Query: 76  FTSGM-----AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----- 125
           FTSG          ++   L  G+EI+  +  +         +  +TG  V+ +      
Sbjct: 66  FTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNG 125

Query: 126 TCDLDEVASAIGPWTKLV---WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
             DLD +   + P TKLV    V + T        + +I ++AH +GAL++VD +    V
Sbjct: 126 LLDLDALEKLLTPRTKLVAITHVSNVTGTVN---PVEEIGKLAHEYGALVVVDAA--QAV 180

Query: 183 LSRPL---ELGADIVMHSATKFIA 203
             RP+    LG D +  S  K   
Sbjct: 181 GHRPIDVQALGVDFLAFSGHKLYG 204

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 51.7 bits (125), Expect = 3e-07
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 23/120 (19%)

Query: 116 KTGVVVKRV-----NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           +TG  +K V        DL+ +   +   TKLV V   +N    I  +++I E+AH  G 
Sbjct: 111 RTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGV 170

Query: 171 LLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIA--GHSDVMA---GVLAVKGERLAK 222
            +LVD +  +  +  P+   +LG D        F+A  GH  +     GVL  K E L +
Sbjct: 171 PVLVDGAQSAGHM--PVDVQDLGCD--------FLAFSGHKMLGPTGIGVLYGKEELLEE 220

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 36/144 (25%)

Query: 52  SGN-PTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL 109
           SG       LE  LA    A+ AL F+SG +A L  ++ LL  G+ I +        D L
Sbjct: 80  SGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFS--------DEL 131

Query: 110 ----------LSRVTPKTGVVVKRVNTCDLDEVASAIGPWT------KLVWVES--PTNP 151
                     LSR        V+R    DLD + + +          KL+  E     + 
Sbjct: 132 NHASIIDGIRLSRAE------VRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDG 185

Query: 152 RQQICDIRKIAEMAHAHGALLLVD 175
              I  + ++ E+A  +GALL VD
Sbjct: 186 D--IAPLPELVELAEKYGALLYVD 207

Length = 388

>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated

 Score = 50.1 bits (121), Expect = 1e-06
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLS 184
             DL+ + +A+   T  V V+ P N    I D+ +IAE+AHA GAL  +  + +   +L 
Sbjct: 191 VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGLLK 249

Query: 185 RPLELGADIV 194
            P E GADIV
Sbjct: 250 PPGEYGADIV 259

Length = 447

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-----IMSPVL-SRPLELGA 191
           P  K   + +PT       ++RKI E AH  G  +LVD +        P+L S     GA
Sbjct: 153 PDAKAAVITNPT-YYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGA 211

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223
           DIV+ S  K +   +     ++ VKG+ +  +
Sbjct: 212 DIVVQSTHKTLPALT--QGSMIHVKGDLVNPD 241

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 81  AALAAVTHLLGTGEEIVAGDDLYGGT-DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
           A L A         + +   D++  T D L +R     G+ ++ V+  DLD++ SA    
Sbjct: 152 AMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGL-GIEIEVVDADDLDDLESADDGD 210

Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSA 198
              V V+ P        D+R + E AH+ GAL++V    ++  +L  P E GADIV+ SA
Sbjct: 211 VFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSA 270

Query: 199 TKF 201
            +F
Sbjct: 271 QRF 273

Length = 450

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 30/247 (12%)

Query: 53  GNPTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTD---- 107
           G+PT + LE  +A+L   + AL   SG MA   A+      G+E++ G+  +   D    
Sbjct: 30  GDPTVNRLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGG 89

Query: 108 -RLLSRVTPKTGVVVKRVNTCDLDEVASAI-------GPWTKLVWVESPTNPRQQIC--- 156
              L    P   +        DL+++ +AI        P T L+ +E+  N         
Sbjct: 90  HAELGGAQPVP-LPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSL 148

Query: 157 -DIRKIAEMAHAHGALLLVD------NSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 209
            ++R+I  +A  HG  L +D       ++   V+ + +   AD V  S +K +      +
Sbjct: 149 EELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGLGAP---V 205

Query: 210 AGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEF 267
             VLA   + +A      +   G G+  A       LR ++    R+ +    A+++AE 
Sbjct: 206 GSVLAGSDDFIAYARRQ-RKYLGGGMRQAGVLAAAGLRALEEGVARLGRDHATARRLAEG 264

Query: 268 LASHPRV 274
           L     V
Sbjct: 265 LELLRGV 271

Length = 288

>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 51/250 (20%)

Query: 60  LESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL--------- 109
           LE  LA+    + AL F+SG +A +  ++ L+G G+ I++        D L         
Sbjct: 66  LEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILS--------DALNHASLIDGC 117

Query: 110 -LSRVTPKTGVVVKRVNTCDLDEVA----SAIGPWTKLVWVESPTNPRQQICDIRKIAEM 164
            LS         V+R    D++ +        G   KL+  +   +    I  + ++  +
Sbjct: 118 RLSGAR------VRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVAL 171

Query: 165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL---------AV 215
           A  +GA L+VD++  + VL    E G   + H   K      D+  G L          V
Sbjct: 172 AERYGAWLMVDDAHGTGVLG---EDGRGTLEHFGLK--PEPVDIQVGTLSKALGSYGAYV 226

Query: 216 KGERLAKELYFLQNAEG----SGLAPFDCWIC---LRGVKTMALRVEKQQDNAQKIAEFL 268
            G +   + Y +  A      + L P         L  ++    R EK      ++   L
Sbjct: 227 AGSQALID-YLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGL 285

Query: 269 ASHPRVKKVN 278
            +       +
Sbjct: 286 EALGFTLMPS 295

7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360

>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 113 VTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167
           V  KTG V+K V        D++++   +   TKLV     +N    I  +  I   AHA
Sbjct: 142 VAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHA 201

Query: 168 HGALLLVDNSIMSPVLSRPLE-LGADIVMHSATK--------FIAGHSDVM 209
            GA +LVD     P +   ++ LGAD ++ S+ K        F+ G SD++
Sbjct: 202 VGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLL 252

Length = 424

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 28/142 (19%)

Query: 58  DALESLLAKL--------DKADRALCFTSGM-AALAAVTHLLG--TGEEIVAGDDLYGGT 106
             L   LAK            + A+ F SG  A + A+  LL    G+ I+     Y   
Sbjct: 44  PELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSY 103

Query: 107 DRLLSRVTPKTGVVVKRVN-------TCDLDEVASAIGPWT---KLVWVESPTNPRQQIC 156
            R+        G  V R           D D + +A+   T   K+V   SP NP   + 
Sbjct: 104 IRIFRL----AGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVA 159

Query: 157 ---DIRKIAEMAHAHGALLLVD 175
              ++ K+ ++A  H  LLLVD
Sbjct: 160 TLEELEKLLDLAKEHNILLLVD 181

Length = 357

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 46/150 (30%)

Query: 55  PTRDAL----ESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
             R+AL      L       +R    +SG+ AL  A   L+G G+E+VA           
Sbjct: 65  ELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVA----------- 113

Query: 110 LSRVTP----------KTGVVVKRVN--------TCDLDEVASAIGPWTKLVWVESPTNP 151
              VTP            G  V  V         T DLD + +AI P T+ +++ SP NP
Sbjct: 114 ---VTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNP 170

Query: 152 ------RQQICDIRKIAEMAHAHGALLLVD 175
                 R    D+R I      HG  ++ D
Sbjct: 171 TGWTASRD---DLRAILAHCRRHGLWIVAD 197

Length = 382

>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 15/177 (8%)

Query: 57  RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVA--GDDLYGGTDRLLSRVT 114
              L  LL  L  A+ A    +  AA+    + L  G+E+V   G+ + GG  R+   + 
Sbjct: 70  LTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVEGGAFRV-PDII 128

Query: 115 PKTG---VVVKRVNTCDLDEVASAIGPWTKLVW-VESPTNPRQQICDIRKIAEMAHAHGA 170
              G   V V   N   L +   AI   T L+  V S       +    ++ E+AH  G 
Sbjct: 129 RLAGAKLVEVGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGL 188

Query: 171 LLLVDNSIMSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
            ++VD +  + V   P     L LGAD+V  S  K + G     AG++  K E + K
Sbjct: 189 PVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGG---PQAGIIVGKKELIEK 242

Length = 395

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 19/108 (17%)

Query: 81  AALAAVTHLLGTGEEIVAGDDLY----------GGTDRLLSRVTPKTGVVVKRVNTCDLD 130
           A  AAV  L+  G+E++  +  Y          G     +  V    G  +      DLD
Sbjct: 97  AIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFAL------DLD 150

Query: 131 EVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVD 175
            + +A+ P T+ + V SP NP   +    ++  IAE+A  H  L++ D
Sbjct: 151 ALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITD 198

Length = 387

>gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated

 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 21/80 (26%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNP-------RQQICDIRKIAEMAHAHGALLLVD----N 176
           DL+ + +A+G  T  + +   TNP       R    +I +IAE+ H  G LL  D    N
Sbjct: 197 DLEALKAAVGEDTAALML---TNPNTLGLFER----NILEIAEIVHEAGGLLYYDGANLN 249

Query: 177 SIMSPVLSRPLELGADIVMH 196
           +I+     RP ++G D V+H
Sbjct: 250 AILGKA--RPGDMGFD-VVH 266

Length = 481

>gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)

Query: 155 ICDIRKIAEMAHAHGALLLVDNSI--------MSPVLSRPLELGADIVMHSATKFIAGHS 206
             ++RKI E+ H +GA +L D +         M P  +  L  GAD V  S  K +A  S
Sbjct: 181 CYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESA--LNGGADFVTQSTHKLLAALS 238

Query: 207 DVMAGVLAVKGER 219
              A ++ VK  R
Sbjct: 239 --QASMIHVKDGR 249

Length = 557

>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 157 DIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSATKFIAGHS--DVMAGVL 213
            I++IA++AH+ GAL+ VD   ++   L  P E GADIV+ +  K    H      AG  
Sbjct: 177 LIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFF 236

Query: 214 AVKGE 218
           AVK E
Sbjct: 237 AVKKE 241

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. Length = 398

>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 58  DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           + LE  LAK  K + AL F SG      V   L    +IV  D+L   +     R+T  T
Sbjct: 81  EELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKAT 140

Query: 118 GVVVKRVNTCDLDEVA-SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
             + K  +  DLD V         KL+  +   +    +  + +I E+A  +GA+  VD+
Sbjct: 141 KKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDD 200

Query: 177 SIMSPVLSRPLELGADIVMH 196
           +  S V+    E G   V H
Sbjct: 201 AHGSGVMG---EAGRGTVHH 217

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385

>gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional

 Score = 40.9 bits (97), Expect = 0.001
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF 201
           ++ D   +   AHA GAL+ V   +++  L   P E+GADI + SA +F
Sbjct: 220 EVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRF 268

Length = 954

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 55  PTRDALESLLAKLD----KADRALCFTSG--MAALAAVTHLLGTGEEIVAGDDLYGGTDR 108
             R+A+ +  A+L      AD  +  T+G   A  AA+  L+  G+E++  D  Y   D 
Sbjct: 71  ALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSY---DS 127

Query: 109 LLSRVTPKTGVVVK--------RVNTCDLDEVASAIGPWTKLVWVESPTNP-----RQQI 155
               +    G  V+        RV   D    A+AI P T+L+ + +P NP         
Sbjct: 128 YAPAIELAGGRAVRVALQPPDFRV---DWQRFAAAISPRTRLIILNTPHNPSGTVWSAA- 183

Query: 156 CDIRKIAEMAHAHGALLLVD 175
            D+R + ++       +L D
Sbjct: 184 -DMRALWQLIAGTDIYVLSD 202

Length = 386

>gnl|CDD|216983 pfam02347, GDC-P, Glycine cleavage system P-protein

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF--IAGHSDVMAG 211
           I D +++ E+AH HG+L++V   +++  + + P E GADIV+ SA +F    G+    AG
Sbjct: 212 IEDYKELIEIAHQHGSLVVVAADLLALTILKPPGEFGADIVVGSAQRFGVPMGYGGPHAG 271

Query: 212 VLAVKGE 218
             AVK E
Sbjct: 272 FFAVKEE 278

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Length = 429

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 29/235 (12%)

Query: 78  SGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLD 130
           S  A    +T LL  G+E+V  D  Y      LS +   TG  V+            DLD
Sbjct: 78  SSEAIYLVLTALLRPGDEVVVVDPAY----HSLSHLAVATGCEVRPWPLLAVRGFRPDLD 133

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM-----SPV 182
            + + + P T+ V V  P NP         + ++ E A   GA+LL DN+       +P 
Sbjct: 134 ALRALLTPRTRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVHDAPP 193

Query: 183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242
           L  P  L   ++         G   +  G   V    L  EL  L++     L+P    +
Sbjct: 194 LPDPSALYDRVISFGTLSKAFGLPGLRVG-WCVGPADLLAELVRLRDYTTLSLSPLVELL 252

Query: 243 CLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKV-----NYAGLPEHPGH 288
               V+     +  R+ + + N +++ ++ A+HP V +        A  P  PGH
Sbjct: 253 AEVAVEHADALIGPRLAEARANRRRLLDWAAAHPDVVRCTPPEGGVAAFPRFPGH 307

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 7/44 (15%)

Query: 157 DIRKIAEMAHAHGALLLVD----NSIMSPVLSRPLELGADIVMH 196
           DIR+I E+ H  G  +  D    N+I+   L+RP ++G D V+H
Sbjct: 222 DIREICEIVHEAGGQVYYDGANLNAIVG--LARPGDMGFD-VVH 262

Length = 496

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 22/125 (17%)

Query: 66  KLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGD---DLYGGTDRLLSRVTPKTGVVV 121
            +D  +  +       AL  A   LL  G+E++  D     Y    +L        G   
Sbjct: 85  DVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLA-------GGKP 137

Query: 122 KRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGA 170
             V           DL+++ +AI P TK + + SP NP   +     ++ I E+A  H  
Sbjct: 138 VPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDI 197

Query: 171 LLLVD 175
           +++ D
Sbjct: 198 IIISD 202

Length = 393

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 30/172 (17%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVDNS---- 177
           DL+ + +A  P TKL+++ +P NP       +++    ++AE+A  HG L++ D +    
Sbjct: 121 DLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEEL---EELAELAKKHGILIISDEAYAEL 177

Query: 178 IMSPVLSRPLELGAD----IVMHSATKFIAGHSDVMA----GVLAVKGERLAKELYFLQN 229
           +        L L       IV+ S +K        +     G L    E L + L  L  
Sbjct: 178 VYDGEPPPALALLDAYERVIVLRSFSKTFG-----LPGLRIGYLIAPPEELLERLKKLLP 232

Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQD----NAQKIAEFLASHPRVKKV 277
              SG +          +      +E+ ++        + E L     +  V
Sbjct: 233 YTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVV 284

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	386
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
PLN02509	464	cystathionine beta-lyase	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
PLN02242	418	methionine gamma-lyase	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
PLN02187	462	rooty/superroot1	99.97
PRK06207	405	aspartate aminotransferase; Provisional	99.97
PRK05957	389	aspartate aminotransferase; Provisional	99.97
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.97
PRK07324	373	transaminase; Validated	99.97
PRK06290	410	aspartate aminotransferase; Provisional	99.97
PRK07681	399	aspartate aminotransferase; Provisional	99.97
PRK06108	382	aspartate aminotransferase; Provisional	99.97
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.97
PRK05942	394	aspartate aminotransferase; Provisional	99.97
PLN00175	413	aminotransferase family protein; Provisional	99.97
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.97
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.97
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.97
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.96
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.96
PLN02656	409	tyrosine transaminase	99.96
PRK08361	391	aspartate aminotransferase; Provisional	99.96
PRK12414	384	putative aminotransferase; Provisional	99.96
PRK08068	389	transaminase; Reviewed	99.96
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.96
PRK08912	387	hypothetical protein; Provisional	99.96
PTZ00377	481	alanine aminotransferase; Provisional	99.96
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.96
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.96
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.96
PRK07682	378	hypothetical protein; Validated	99.96
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.96
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.96
PRK06348	384	aspartate aminotransferase; Provisional	99.96
PRK08960	387	hypothetical protein; Provisional	99.96
PRK06855	433	aminotransferase; Validated	99.96
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.96
PRK08636	403	aspartate aminotransferase; Provisional	99.96
PRK05764	393	aspartate aminotransferase; Provisional	99.96
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.96
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.96
PRK07550	386	hypothetical protein; Provisional	99.96
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.96
PRK06225	380	aspartate aminotransferase; Provisional	99.96
PRK06107	402	aspartate aminotransferase; Provisional	99.96
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.96
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.96
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.95
PTZ00433	412	tyrosine aminotransferase; Provisional	99.95
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.95
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.95
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.95
PRK09148	405	aminotransferase; Validated	99.95
PRK08363	398	alanine aminotransferase; Validated	99.95
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.95
PRK07179	407	hypothetical protein; Provisional	99.95
PRK07683	387	aminotransferase A; Validated	99.95
PRK09265	404	aminotransferase AlaT; Validated	99.95
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.95
PRK08175	395	aminotransferase; Validated	99.95
PRK09082	386	methionine aminotransferase; Validated	99.95
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.95
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.95
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.95
PRK05839	374	hypothetical protein; Provisional	99.95
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.95
PLN02231	534	alanine transaminase	99.95
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.95
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.95
PRK07337	388	aminotransferase; Validated	99.95
PRK07777	387	aminotransferase; Validated	99.95
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.95
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.95
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.95
PRK07568	397	aspartate aminotransferase; Provisional	99.95
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.95
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.95
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.95
PRK06836	394	aspartate aminotransferase; Provisional	99.95
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.95
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.95
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.95
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.95
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.95
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.95
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.95
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.95
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.95
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.95
PRK09105	370	putative aminotransferase; Provisional	99.95
PLN02483	489	serine palmitoyltransferase	99.95
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.95
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.95
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.94
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.94
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.94
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.94
PTZ00376	404	aspartate aminotransferase; Provisional	99.94
PRK13392	410	5-aminolevulinate synthase; Provisional	99.94
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.94
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.94
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.94
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.94
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.94
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.94
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.94
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.94
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.94
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.94
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.94
PRK08354	311	putative aminotransferase; Provisional	99.94
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.94
PRK13393	406	5-aminolevulinate synthase; Provisional	99.94
PLN02651	364	cysteine desulfurase	99.94
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.94
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.94
PLN02955	476	8-amino-7-oxononanoate synthase	99.94
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.94
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.94
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.94
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.94
PLN02368	407	alanine transaminase	99.94
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.94
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.94
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.94
PLN02397	423	aspartate transaminase	99.94
PRK03321	352	putative aminotransferase; Provisional	99.94
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.93
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.93
PLN02409	401	serine--glyoxylate aminotransaminase	99.93
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.93
PRK07908	349	hypothetical protein; Provisional	99.93
PRK02948	381	cysteine desulfurase; Provisional	99.93
PRK09064	407	5-aminolevulinate synthase; Validated	99.93
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.93
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.93
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.93
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.93
PRK09275	527	aspartate aminotransferase; Provisional	99.93
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.93
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.93
PRK08637	388	hypothetical protein; Provisional	99.92
PLN02672	1082	methionine S-methyltransferase	99.92
PLN02721	353	threonine aldolase	99.92
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.92
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.92
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.92
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.92
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.92
PLN02822	481	serine palmitoyltransferase	99.92
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.92
PRK14012	404	cysteine desulfurase; Provisional	99.92
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.92
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.92
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.91
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.91
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.91
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.91
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.91
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.9
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.9
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.9
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.9
PRK04311	464	selenocysteine synthase; Provisional	99.89
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.89
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.89
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.89
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.89
PLN02724	805	Molybdenum cofactor sulfurase	99.89
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.89
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.89
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.89
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.89
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.88
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.88
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.88
PRK10534	333	L-threonine aldolase; Provisional	99.88
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.88
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.87
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.87
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.87
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.87
PRK02627	396	acetylornithine aminotransferase; Provisional	99.86
PRK07505	402	hypothetical protein; Provisional	99.86
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.86
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.86
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.85
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.85
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.84
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.84
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.84
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.84
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.84
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.84
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.83
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.83
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.83
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.83
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.82
PRK03080	378	phosphoserine aminotransferase; Provisional	99.82
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.82
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.82
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.82
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.8
PRK02769	380	histidine decarboxylase; Provisional	99.8
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.8
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.8
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.79
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.79
PLN03032	374	serine decarboxylase; Provisional	99.78
PLN02624	474	ornithine-delta-aminotransferase	99.78
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.77
PLN00144	382	acetylornithine transaminase	99.77
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.77
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.77
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.76
PLN02271	586	serine hydroxymethyltransferase	99.76
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.75
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.75
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.75
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.74
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.74
PRK13237	460	tyrosine phenol-lyase; Provisional	99.72
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.72
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.71
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.71
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.71
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.71
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.71
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.71
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.71
PLN02880	490	tyrosine decarboxylase	99.71
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.7
PLN02590	539	probable tyrosine decarboxylase	99.7
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.7
PRK04260	375	acetylornithine aminotransferase; Provisional	99.7
PRK05367	954	glycine dehydrogenase; Provisional	99.69
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.69
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.69
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.69
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.69
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.68
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.68
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.68
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.68
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.67
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.67
PRK12566	954	glycine dehydrogenase; Provisional	99.67
PRK05367	954	glycine dehydrogenase; Provisional	99.66
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.66
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.66
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.65
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.65
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.65
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.65
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.65
PLN02263	470	serine decarboxylase	99.64
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.63
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.63
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.63
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.63
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.63
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.61
PRK15029	755	arginine decarboxylase; Provisional	99.61
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.6
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.6
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.6
PRK06541	460	hypothetical protein; Provisional	99.6
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.6
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.59
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.59
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.59
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.57
PRK13578	720	ornithine decarboxylase; Provisional	99.57
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.56
PRK12403	460	putative aminotransferase; Provisional	99.56
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.56
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.55
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.55
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.55
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.54
PRK07678	451	aminotransferase; Validated	99.54
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.54
PRK06149	972	hypothetical protein; Provisional	99.54
PRK07046	453	aminotransferase; Validated	99.53
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.53
PRK07481	449	hypothetical protein; Provisional	99.53
PRK07482	461	hypothetical protein; Provisional	99.52
PLN02452	365	phosphoserine transaminase	99.52
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.52
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.52
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.52
PRK05965	459	hypothetical protein; Provisional	99.51
PRK06062	451	hypothetical protein; Provisional	99.51
PRK06105	460	aminotransferase; Provisional	99.51
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.51
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.51
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.5
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.5
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.49
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.47
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.47
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.46
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.46
PRK07036	466	hypothetical protein; Provisional	99.46
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.45
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.45
PRK06917	447	hypothetical protein; Provisional	99.45
PRK15400	714	lysine decarboxylase CadA; Provisional	99.45
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.44
PRK07483	443	hypothetical protein; Provisional	99.44
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.44
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.43
PRK06148	1013	hypothetical protein; Provisional	99.43
PRK07480	456	putative aminotransferase; Validated	99.4
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.4
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.39
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.39
PRK12462	364	phosphoserine aminotransferase; Provisional	99.37
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.36
PRK08297	443	L-lysine aminotransferase; Provisional	99.35
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.34
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.32
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.32
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.3
COG4100	416	Cystathionine beta-lyase family protein involved i	99.28
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.26
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.24
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.2
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.18
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.18
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.08
PRK12566	954	glycine dehydrogenase; Provisional	99.07
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	99.05
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.03
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.98
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.95
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	98.86
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.75
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.74
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.73
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.73
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.59
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.54
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.37
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.35
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.07
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.87
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	96.02
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	92.93
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	85.9
PLN02672	1082	methionine S-methyltransferase	85.18
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	80.01

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-55  Score=399.51  Aligned_cols=379  Identities=50%  Similarity=0.808  Sum_probs=354.4

Q ss_pred             CCCccceeeccCCCC-CCCCCcccceeeeeeeecCCCCC--------CCCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 016612            6 EPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (386)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (386)
                      +..+++++++.|... +.+|.+++|+++++++..++...        ...+.|++.|+|.+..+++.++++-|.++.+.+
T Consensus         5 ~~~~~T~~v~~g~~~~~~~gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~af   84 (396)
T COG0626           5 KLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFAF   84 (396)
T ss_pred             ccccceeeEEcccccccCCCcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcEEEe
Confidence            456789999999655 56999999999999998876643        467889999999999999999999999999999


Q ss_pred             CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC-CCceEEEEeCCCCCCcc
Q 016612           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQ  154 (386)
Q Consensus        77 ~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~-~~~~~v~~~~~~nptG~  154 (386)
                      +||++|+. +++.++++||+|++++..|+++.+.+..+.+++|+++.+++..+.+++++++. ++|++|++++|+||+..
T Consensus        85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~  164 (396)
T COG0626          85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLE  164 (396)
T ss_pred             cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccc
Confidence            99999997 58889999999999999999999999999999999999999988888887777 59999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh-hcCC
Q 016612          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGS  233 (386)
Q Consensus       155 ~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~-~~~~  233 (386)
                      +.|+++|+++|+++|+++++|++++.|.+++|++.|+||++.|.+|+++|++.+.+|+++++++.+.+.+....+ ..|.
T Consensus       165 v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~  244 (396)
T COG0626         165 VPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA  244 (396)
T ss_pred             cccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999888788888887766666 4899


Q ss_pred             CCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHH
Q 016612          234 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  313 (386)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  313 (386)
                      .++++.+|+++++++.+..|+++..+|+..+.++|++++.++++++|+++++|++++..++.++.|++++|.+.+.+...
T Consensus       245 ~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~  324 (396)
T COG0626         245 VLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAK  324 (396)
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988789999999997646689


Q ss_pred             HHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          314 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       314 ~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      +|++.++.+.+..+.|+..+++++|+.++|..++.+.+.+.|+.+++||+|+|.|+++++++.|+++|+++
T Consensus       325 ~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlEd~eDLi~Dl~~Al~~~  395 (396)
T COG0626         325 KFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLEDVEDLIADLEQALAKA  395 (396)
T ss_pred             HHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.2e-54  Score=401.76  Aligned_cols=381  Identities=39%  Similarity=0.622  Sum_probs=346.8

Q ss_pred             CCCCCccceeeccCCC-CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHH
Q 016612            4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (386)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~a   82 (386)
                      ++|..+++++++.|.. ....|.+.||++++++|..++......+.|++.|+|.+..+++.++++.|.+.+++++||+++
T Consensus         1 ~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~A   80 (388)
T PRK08861          1 MSTRKPATIAVRTGIESDSQYHAVVPPIYLSTNYGFPAFGEVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSA   80 (388)
T ss_pred             CCCCCcccceeECCCCCCCCCCCccCCcccCcceEeCCcCccCCccccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHH
Confidence            3566788999999854 334799999999999998766544456779999999999999999999999999999999999


Q ss_pred             HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHH
Q 016612           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (386)
Q Consensus        83 l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i  161 (386)
                      +. ++.+++++||+|++++|.|++....+.......|++++.++..|++++++++++++++|++++|+||||.+.|+++|
T Consensus        81 i~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I  160 (388)
T PRK08861         81 LNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAEL  160 (388)
T ss_pred             HHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHH
Confidence            97 45668999999999999999877666566667789999999889999999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHH
Q 016612          162 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (386)
Q Consensus       162 ~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (386)
                      .++|+++|+++|+|++|+.+....+.+.|+|+++.|++|+++|++++++|+++++++++.+.+.......|..++++.+|
T Consensus       161 ~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~  240 (388)
T PRK08861        161 CQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSY  240 (388)
T ss_pred             HHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHH
Confidence            99999999999999999998877788889999999999999999888999999877778777777778888999999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcC
Q 016612          242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTK  320 (386)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~  320 (386)
                      +++++++.+..|+++..+++..+.++|++++.+..+.+|+++++|++.++.++..+.|++++|.+. +.+...+|++.++
T Consensus       241 l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~  320 (388)
T PRK08861        241 MTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALA  320 (388)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999988888889999999995 4667889999999


Q ss_pred             cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          321 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       321 ~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ...+..+.|+..+++.+|+.++|..++++++...|+.++.||+|+|+|+.+++++.|+++|+++
T Consensus       321 l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE~~~dli~Dl~~al~~~  384 (388)
T PRK08861        321 LFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQAFAKA  384 (388)
T ss_pred             cceEccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999864

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=2e-54  Score=406.22  Aligned_cols=385  Identities=85%  Similarity=1.290  Sum_probs=352.3

Q ss_pred             CCCCCCCccceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHH
Q 016612            2 SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMA   81 (386)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~   81 (386)
                      ++++++..++.+++.+...+.+|.+.+|++++++|..++......+.|++.|+|.+++++++++++.|.+.++++++|++
T Consensus        80 ~~~~~~~~~t~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~~SG~a  159 (464)
T PLN02509         80 NIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMA  159 (464)
T ss_pred             ccccCCCcchHheeCCCCCCCCCCccCCccccceecCccccccCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEeCcHHH
Confidence            45678889999999995556689999999999999877665556678999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHH
Q 016612           82 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (386)
Q Consensus        82 al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i  161 (386)
                      ++.+++.++++||+|+++++.|+++...+...+...|++++.++..|++++++++++++++|++++|+||+|.+.|+++|
T Consensus       160 Ai~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I  239 (464)
T PLN02509        160 ALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKI  239 (464)
T ss_pred             HHHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHH
Confidence            88877778999999999999999987766666778899999999889999999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHH
Q 016612          162 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (386)
Q Consensus       162 ~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (386)
                      .++|+++|+++|+|++++.+....+...++|++++|++|+++|++++.+|+++++++.+.+.+...+...+..+++..++
T Consensus       240 ~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~  319 (464)
T PLN02509        240 AEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCW  319 (464)
T ss_pred             HHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHH
Confidence            99999999999999999988877777789999999999999998888899999877777666666666667788999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc
Q 016612          242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  321 (386)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  321 (386)
                      +.+++++.+..|+++..++++.+.++|++++.++.+.+|+|+++|++.+..++.++.|++++|.+.+.+...+|++.++.
T Consensus       320 l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l  399 (464)
T PLN02509        320 LCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKY  399 (464)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999999999999999888888999999999777778899999999


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCCC
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  386 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~~  386 (386)
                      +.+..++|+..+++++|+.++|..++.+++.+.|+.++.||+|+|+|+.+++++.|.++|+..++
T Consensus       400 ~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGlE~~~DLi~Dl~~Al~~~~~  464 (464)
T PLN02509        400 FSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFRTGPL  464 (464)
T ss_pred             ceEcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999987653

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=1.9e-53  Score=395.38  Aligned_cols=377  Identities=75%  Similarity=1.139  Sum_probs=343.5

Q ss_pred             cceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh
Q 016612           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL   89 (386)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~   89 (386)
                      ++.+++.|..+++.|.+.||++++++|..+.......+.|++.|+|.++++++.+++++|.++.+++++|++++++++.+
T Consensus         2 ~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~l   81 (378)
T TIGR01329         2 STLLVNTDNKNDPYDASSMPIYQTATFKQPLAIENGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDVITRL   81 (378)
T ss_pred             CceeEeCCCCCCCCCCcCCCeecCcceecCCccccCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHH
Confidence            35667777444557999999999999987665555568899999999999999999999999999999999998877678


Q ss_pred             cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcC
Q 016612           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG  169 (386)
Q Consensus        90 ~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~  169 (386)
                      +++||+|+++++.|+++...+...++..|+++++++..|++++++++++++++|++++|+||+|.+.|+++|.++|+++|
T Consensus        82 l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g  161 (378)
T TIGR01329        82 LNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQN  161 (378)
T ss_pred             hCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcC
Confidence            99999999999999998777777778899999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc
Q 016612          170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (386)
Q Consensus       170 ~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (386)
                      +++|+|++++.+....+...++|++++|++|+++|++++++|+++++++.+.+.+.......+..+++..++++.++++.
T Consensus       162 ~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t  241 (378)
T TIGR01329       162 ALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT  241 (378)
T ss_pred             CEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC
Confidence            99999999988877777778999999999999999888889999998777777777777667788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCC
Q 016612          250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFG  329 (386)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G  329 (386)
                      +..|+++..+++..+.++|++++.+..+++++|+++|++.++.+...+.+++++|.+.+.....++++.++.+++.++.|
T Consensus       242 l~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G  321 (378)
T TIGR01329       242 LAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFG  321 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCC
Confidence            99999999999999999999999999999999999999999988777889999999977666889999999999999999


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCCC
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  386 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~~  386 (386)
                      +..+++++|+.++|..++++++.+.|+.++.||+|+|.|+.+++++.|+++|++++.
T Consensus       322 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~~  378 (378)
T TIGR01329       322 SVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFVTAPA  378 (378)
T ss_pred             CCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999998763

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=3.2e-53  Score=389.60  Aligned_cols=372  Identities=48%  Similarity=0.779  Sum_probs=324.6

Q ss_pred             ceeeccCCCCC--CCCCcccceeeeeeeecCC-------CCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHH
Q 016612           11 TLLMNFSNEFD--PYGALSTPLYQTATFKQPS-------ATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMA   81 (386)
Q Consensus        11 ~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~-------~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~   81 (386)
                      |++++.|...+  .+|.+.||++++++|..++       ......+.|+|.|+|.+..+++.++++.|.+.+++++||++
T Consensus         2 T~~vh~g~~~~~~~~~~v~~pi~~sstf~~~~~~~~~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGma   81 (386)
T PF01053_consen    2 TLLVHAGRDPDEDQTGAVNPPIYQSSTFVFDSAEELDAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMA   81 (386)
T ss_dssp             HHHHHTTTTGGTSTTTBSS--B---SBBBBSSHHHHHHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHH
T ss_pred             cceEeCCCCCCCCCCCCeeCCccccccCcccchHHHHhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccchHH
Confidence            56788886654  7999999999999998873       23455688999999999999999999999999999999999


Q ss_pred             HHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHH
Q 016612           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK  160 (386)
Q Consensus        82 al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~  160 (386)
                      |+. ++++++++||+|++++..|+++...+...+...|+++.+++..|++++++++++++++|+++.|+||+..+.|+++
T Consensus        82 Ai~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~  161 (386)
T PF01053_consen   82 AISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEA  161 (386)
T ss_dssp             HHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHH
T ss_pred             HHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHH
Confidence            995 7788999999999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcC-CEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcC-hhHHHHHHHhhhhcCCCCChh
Q 016612          161 IAEMAHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPF  238 (386)
Q Consensus       161 i~~la~~~~-~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~-~~~~~~~~~~~~~~~~~~~~~  238 (386)
                      |+++|+++| +++++|.+++.|...+++..|+|+++.|++|+++|++.+++|.+++++ +.+.+.++......|..+++.
T Consensus       162 i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~  241 (386)
T PF01053_consen  162 IAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPF  241 (386)
T ss_dssp             HHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HH
T ss_pred             HHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHH
Confidence            999999998 999999999999988999999999999999999999999999999987 567777777888889999999


Q ss_pred             hHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHH-hHHHHHh
Q 016612          239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVVE  317 (386)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~  317 (386)
                      .+++++++++.+..|+++..+|+..+.++|++++.++.+.+|+++++|++.++.+..++.+++++|.+.+.. ...++++
T Consensus       242 da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~  321 (386)
T PF01053_consen  242 DAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLD  321 (386)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHh
Confidence            999999999999999999999999999999999999999999999999999999888899999999998774 8999999


Q ss_pred             hcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       318 ~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      +++...+..++|+..+++.+|+..+|..++.+.+...|+.+++||+|+|+|+.+++++.|++||+
T Consensus       322 ~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  322 ALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGLEDPDDLIADLEQALE  386 (386)
T ss_dssp             H-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH
T ss_pred             hhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEeccCCHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999986

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.9e-52  Score=387.32  Aligned_cols=377  Identities=38%  Similarity=0.598  Sum_probs=340.7

Q ss_pred             CccceeeccCCC-CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-H
Q 016612            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (386)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~   85 (386)
                      .+++..++.|.. .+..|.+.||++++++|..++......+.|++.++|.++++++.++++.|.++.+++++|++++. +
T Consensus         4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~   83 (386)
T PRK08045          4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   83 (386)
T ss_pred             CcccceeEcCCCCCCCCCCccCCccCCcceecCCccccCCceeeCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHH
Confidence            467888888844 44579999999999999876654445677999999999999999999999888899999999987 4


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la  165 (386)
                      +.+++++||+|++++|.|+++...+..+....++++..++..|++++++++++++++|++++|+||||.+.|+++|.++|
T Consensus        84 l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia  163 (386)
T PRK08045         84 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  163 (386)
T ss_pred             HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHH
Confidence            56689999999999999998776766666667778888887799999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      +++|+++|+|++|..+....+...++|+++.|++|+++|++++++|+++++++++.+.+.......+..+++..++++++
T Consensus       164 ~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~r  243 (386)
T PRK08045        164 REAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  243 (386)
T ss_pred             HHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999999887777788899999999999999999999999988777777777777777788899999999999


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcCccee
Q 016612          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSI  324 (386)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi  324 (386)
                      +++.+..|+++..+|+..+.++|++++.++.+++|+++++|++.+..++.++.|++++|.++ +.+...+|+++++...+
T Consensus       244 gl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~  323 (386)
T PRK08045        244 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTL  323 (386)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeE
Confidence            99999999999999999999999999999999999999999999988877889999999995 45667899999999999


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+.|+..+++.+|+.++|..++++++...|+.++.||+|+|+|+.+++++.|.++|+++
T Consensus       324 ~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  383 (386)
T PRK08045        324 AESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_pred             eccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999875

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=5e-52  Score=385.37  Aligned_cols=377  Identities=44%  Similarity=0.729  Sum_probs=343.9

Q ss_pred             ccceeeccCCC-CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHH
Q 016612            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (386)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~   87 (386)
                      +++.+++.+.. ....|.+.||++++++|..++......+.|++.++|....+++.++++.|.+..++++||++|+.+++
T Consensus         3 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l   82 (380)
T PRK06176          3 MQTKLIHGGISEDTTTGAVSVPIYQTSTYRQDAIGRPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVF   82 (380)
T ss_pred             ccceeeECCCCCCCCCCCccCCcccCCceecCCCCCcCCCcccCCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHH
Confidence            45777888844 33479999999999999876654445678999999999999999999999999999999999998777


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~  167 (386)
                      .+++|||+|+++++.|++....+...+...|++++.++..|++++++++++++++|++++|+||+|.+.|+++|.++|++
T Consensus        83 ~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~  162 (380)
T PRK06176         83 SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKD  162 (380)
T ss_pred             HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHH
Confidence            88999999999999999888777777888999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC
Q 016612          168 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (386)
Q Consensus       168 ~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (386)
                      +|+++|+|++++.+....+...++|++++|++|+++|++.+.+|+++++++++.+.+...+...+..+++..++...+++
T Consensus       163 ~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl  242 (380)
T PRK06176        163 HGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGI  242 (380)
T ss_pred             cCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence            99999999999988777777889999999999999988877899999877778777777777777888888999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccC
Q 016612          248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  327 (386)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~  327 (386)
                      +.+..|+++..+++..+.+++++++.+..+++++++++|++.++.++.++.|++++|.+++.+...+|++.++.+.+..+
T Consensus       243 ~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~~~~~~s  322 (380)
T PRK06176        243 KTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGES  322 (380)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEccC
Confidence            99999999999999999999999999999999999999999998877788999999999777778899999999999999


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  385 (386)
                      .|+..+++++|+..+|..++++++...|+.++.||+|+|+|+.+++++.|+++|++.+
T Consensus       323 ~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~Al~~~~  380 (380)
T PRK06176        323 LGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKIG  380 (380)
T ss_pred             CCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999998753

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.9e-51  Score=383.46  Aligned_cols=380  Identities=45%  Similarity=0.768  Sum_probs=344.7

Q ss_pred             CCCCccceeeccCCCCC-CCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHH
Q 016612            5 EEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (386)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al   83 (386)
                      ++.++++..++.|...+ .+|++++|+++++++..++......+.|++.++|..+++++.++++.|.+..+++++|+.++
T Consensus         3 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai   82 (390)
T PRK08064          3 MSYSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDTFGKYDYSRSGNPTREALEDIIAELEGGTKGFAFASGMAAI   82 (390)
T ss_pred             CCCCcccceeeCCCCCCCCCCCccCCcccCcceecCcccccCCCcccCCCChhHHHHHHHHHHHhCCCCeEEECCHHHHH
Confidence            34457788899885433 47999999999999987776666667799999999999999999999999899999999998


Q ss_pred             HHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHH
Q 016612           84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE  163 (386)
Q Consensus        84 ~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~  163 (386)
                      .+++.++++||+|+++++.|+++...+...++..|++++.++..|++++++.+++++++|++++|+||+|.+.|+++|.+
T Consensus        83 ~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~  162 (390)
T PRK08064         83 STAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVK  162 (390)
T ss_pred             HHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHH
Confidence            76556889999999999999988777777778899999999998999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHH
Q 016612          164 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (386)
Q Consensus       164 la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (386)
                      +|+++|+++|+|++|+.+....+.+.++|+++.|++|+++|++|+++|+++++++++.+.+.......+...++..++..
T Consensus       163 la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~  242 (390)
T PRK08064        163 LAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLV  242 (390)
T ss_pred             HHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999999999999988776666677999999999999999998889999888777888888887777888888899999


Q ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcce
Q 016612          244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  323 (386)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g  323 (386)
                      .++++.+..|+++..+++..+.++|++++.+..+++++|+++|++.++.++.++.+++++|.+++.+...++++.++...
T Consensus       243 ~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~  322 (390)
T PRK08064        243 LRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPV  322 (390)
T ss_pred             HcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcce
Confidence            99999999999999999999999999999999999999999999999888778899999999987777889999999988


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      +.++.|+..+++++|+.++|...+.+++...|+.++.||+|+|.|+++++++.|.++|+++
T Consensus       323 ~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        323 FAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             EcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999998888999999999999999999999999999875

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=2.6e-51  Score=380.83  Aligned_cols=377  Identities=41%  Similarity=0.668  Sum_probs=338.1

Q ss_pred             CccceeeccCCC-CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHH-
Q 016612            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-   85 (386)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-   85 (386)
                      .+++.+++.+.. ++..|.+.||+..++.+..........+.|++.++|.++++++.++++.|.+++++++||++|+.+ 
T Consensus         3 ~~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~   82 (382)
T TIGR02080         3 KQATIAVRSGLNSDTQYGCVVPPIYLSTTYNFTGFNEPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLV   82 (382)
T ss_pred             CcccceeecCCCCCCCCCCccCCeeCCceeEeCCcCccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHH
Confidence            456788888854 344799999999999987654333334679999999999999999999998888889999999974 


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la  165 (386)
                      +.+++++||+|++++|.|+++...+..+....++++..++..|++++++++++++++|++++|+||||.+.|+++|.++|
T Consensus        83 l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la  162 (382)
T TIGR02080        83 TTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLA  162 (382)
T ss_pred             HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHH
Confidence            55689999999999999998877766666777889998888899999999998999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      +++|+++++|++|+.+....+...++|+++.|++|+++|++++++|+++++++++.+.+.......|..+++..++++++
T Consensus       163 ~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr  242 (382)
T TIGR02080       163 KAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR  242 (382)
T ss_pred             HHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHc
Confidence            99999999999998887666777789999999999999999999999988777788778777777788999999999999


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcCccee
Q 016612          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSI  324 (386)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi  324 (386)
                      +++.+..|+++..+|+..+.++|++++.++.+++|+++++|++.+..++..+.|++++|.+. +.+...+|++.++...+
T Consensus       243 ~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~  322 (382)
T TIGR02080       243 GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTL  322 (382)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceE
Confidence            99999999999999999999999999999999999999999999988888889999999995 45667899999999999


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+.|+..+++++|+.++|..++++.+...|+.++.||+|+|+|+.+++++.|.++|+++
T Consensus       323 ~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~dl~~dl~~al~~~  382 (382)
T TIGR02080       323 AESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGLEDADDLIADLEQGLRAA  382 (382)
T ss_pred             eccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999998999999999999999999999999999999763

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=3e-51  Score=380.16  Aligned_cols=374  Identities=47%  Similarity=0.784  Sum_probs=341.0

Q ss_pred             ccceeeccCCC-CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHH
Q 016612            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (386)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~   87 (386)
                      +++.+++.|.. ...+|.+.||+++++++..++......+.|++.++|....+++.++++.|.+..+++++|++++.+++
T Consensus         3 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~   82 (377)
T PRK07671          3 AKTKLIHGGIIGDPSTGAVSVPIYQVSTYKQEAVGKHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVM   82 (377)
T ss_pred             cccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCCCcCCCCChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHH
Confidence            46788888844 34479999999999999877654445677999999999999999999999999999999998888777


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~  167 (386)
                      .++++||+|++++|.|++....+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|+++|.++|++
T Consensus        83 ~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~  162 (377)
T PRK07671         83 MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKE  162 (377)
T ss_pred             HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence            78999999999999999777666667778999999999889999999999999999999999999999999999999999


Q ss_pred             cCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC
Q 016612          168 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (386)
Q Consensus       168 ~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (386)
                      +|+++++|++|+.+....+...++|+++.|++|+++|++++.+|+++++++.+.+.+...+...+..+++..++++++++
T Consensus       163 ~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l  242 (377)
T PRK07671        163 KGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGL  242 (377)
T ss_pred             cCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCc
Confidence            99999999999877766677789999999999999988877789888887778888888888888899999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccC
Q 016612          248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  327 (386)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~  327 (386)
                      +.+..|+++..+|+..+.++|++++.+..+.+|+++++|++.++.++..+.|++++|.+.+.+...++++.++.+.+..+
T Consensus       243 ~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~l~~~~~s  322 (377)
T PRK07671        243 KTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQYFTLAES  322 (377)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhCCcceEccC
Confidence            99999999999999999999999999999999999999999998887788899999999777778899999999999999


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      .|+..+++++|+..+|..++.+++...|+.++.||+|+|+|+.+++++.|.++|+
T Consensus       323 ~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~  377 (377)
T PRK07671        323 LGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQALA  377 (377)
T ss_pred             CCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999984

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=8.5e-51  Score=379.05  Aligned_cols=380  Identities=36%  Similarity=0.627  Sum_probs=338.4

Q ss_pred             CCCCCccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceE
Q 016612            4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAL   74 (386)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i   74 (386)
                      ++++.+++.+++.+.. ++..|.+.||++++++|..++..        ....+.|++.++|..+++++.++++.|.++.+
T Consensus         4 ~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i   83 (398)
T PRK08249          4 FNNAGVGTKAVWAGEKEYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAAT   83 (398)
T ss_pred             cccCCcccceeeCCCCCCCCCCCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEE
Confidence            3566788999999854 34479999999999999765542        22346688999999999999999999999999


Q ss_pred             EeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCc
Q 016612           75 CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ  153 (386)
Q Consensus        75 ~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG  153 (386)
                      ++++|++|+. ++.+++++||+|+++.+.|+++...+...+...|++++.++..|+++++++++++|++|++++|+||+|
T Consensus        84 ~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg  163 (398)
T PRK08249         84 AFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTL  163 (398)
T ss_pred             EeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEECCCCCCC
Confidence            9999999987 456789999999999999998877776667789999999998899999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCC
Q 016612          154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (386)
Q Consensus       154 ~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~  233 (386)
                      .+.|+++|.++|+++|+++|+|++|+.+....+...++|+++.|++|+++|++...+|+++++ +++.+.+.......+.
T Consensus       164 ~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~-~~l~~~l~~~~~~~g~  242 (398)
T PRK08249        164 KIVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGS-KELMEQVYHYREINGA  242 (398)
T ss_pred             ccCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECC-HHHHHHHHHHHHhcCC
Confidence            999999999999999999999999997776666667899999999999987765557887764 5677777777777788


Q ss_pred             CCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhH
Q 016612          234 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALS  312 (386)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~  312 (386)
                      .+++..+++++++++.+..|+++..++++.+.++|++++.++.+.+|+++++|++.+..++.++.|++++|.+. +.+..
T Consensus       243 ~~s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~  322 (398)
T PRK08249        243 TMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTV  322 (398)
T ss_pred             CCCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHH
Confidence            89999999999999999999999999999999999999999999999999999999988877889999999994 55668


Q ss_pred             HHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          313 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       313 ~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      .++++.++...+..++|+..+++.+|+.++|..++.+++...|+.++.||+|+|+|+.+++++.|.++|+++
T Consensus       323 ~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  394 (398)
T PRK08249        323 KRLLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIEDTEDLIADLEQAFAHL  394 (398)
T ss_pred             HHHHHhCCcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999999999999999999999999999999864

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.5e-50  Score=377.84  Aligned_cols=376  Identities=39%  Similarity=0.648  Sum_probs=336.1

Q ss_pred             ccceeeccCCC-CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HH
Q 016612            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (386)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~   86 (386)
                      .++.+++.|.. ++..|.+.||+..++.+..........+.|++.++|..+++++.++++.|.++.+++++|++++. ++
T Consensus        13 ~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l   92 (405)
T PRK08776         13 AATAAVRAGIDRDTAYGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGAINLVL   92 (405)
T ss_pred             ccchheeCCCCCCCCCCCccCCEeccceEEeCCCCcccCCcccCCCChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHH
Confidence            34678888844 33479999999999998765543334567888899999999999999999988999999999987 45


Q ss_pred             HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHH
Q 016612           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (386)
Q Consensus        87 ~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~  166 (386)
                      .+++++||+|+++.|.|+++...+...++..|++++.++..|++++++.+++++++|++++|+||+|.+.++++|.++|+
T Consensus        93 ~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~  172 (405)
T PRK08776         93 NALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAH  172 (405)
T ss_pred             HHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHH
Confidence            66899999999999999987766667677889999999988999999999889999999999999999999999999999


Q ss_pred             HcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhc
Q 016612          167 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (386)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (386)
                      ++|+++|+|++|+.+....+...++|+++.|++|+++|++++++|+++++++++.+.+.......+...+++.+++..++
T Consensus       173 ~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~g  252 (405)
T PRK08776        173 KVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRG  252 (405)
T ss_pred             HcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence            99999999999988776667778999999999999999988889999888777877776666666777899999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcCcceec
Q 016612          247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSIT  325 (386)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~  325 (386)
                      ++.+..|+++..+|+..+.++|++++.+..+.+|+++++|++.++.++..+.|++++|.+. +.+...+|++.++...+.
T Consensus       253 l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~  332 (405)
T PRK08776        253 LRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRYFTLA  332 (405)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCcceEc
Confidence            9999999999999999999999999999999999999999999988877889999999994 456678999999999999


Q ss_pred             cCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          326 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       326 ~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      .+.|+..+++++|+.++|..++++.+...|+.++.||+|+|.|+.+++++.|+++|+++
T Consensus       333 ~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~~  391 (405)
T PRK08776        333 ESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIESAEDLLIDLRAGLARA  391 (405)
T ss_pred             cCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998899999999999999999999999999999874

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=9.1e-51  Score=373.96  Aligned_cols=376  Identities=26%  Similarity=0.433  Sum_probs=329.6

Q ss_pred             CCCCCccceeeccCCCCC-CCCCcccceeeeeeeecCCCC--------C-CCCccccCCCCchHHHHHHHHHhhcCCCce
Q 016612            4 EEEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRA   73 (386)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~   73 (386)
                      +.++.+++.+++.+...+ .+|.+.||++++++|..++..        . ...+.|+|.|+|.+..+++.++++.|.+.+
T Consensus         1 ~~~~~~~t~~~~~~~~~~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a   80 (395)
T PRK08114          1 MTDKKLDTQLVNAGRSKKYTQGSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGC   80 (395)
T ss_pred             CCCCCcchheEeCCCCCCCCCCCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeE
Confidence            346678888999885444 359999999999988664432        1 124679999999999999999999999999


Q ss_pred             EEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCC
Q 016612           74 LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR  152 (386)
Q Consensus        74 i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~npt  152 (386)
                      ++++||++|++ ++++++++||+|++++..|+++...+...++.+|+++.+++..|.++++++++++|++|++++|+||+
T Consensus        81 ~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~  160 (395)
T PRK08114         81 ALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSIT  160 (395)
T ss_pred             EEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCC
Confidence            99999999997 56778999999999999999998888777888999999999889999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHc--CCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh
Q 016612          153 QQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (386)
Q Consensus       153 G~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~  230 (386)
                      |.+.|+++|+++|+++  |+++++|.+++.|...++.++|+|+++.|.+|+++|++.+.+|+++.+ ++..+.+......
T Consensus       161 ~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~~~~  239 (395)
T PRK08114        161 MEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLRENSYL  239 (395)
T ss_pred             CEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHHHHHHHHh
Confidence            9999999999999998  499999999999999999999999999999999999998889988765 4465556666667


Q ss_pred             cCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--
Q 016612          231 EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--  308 (386)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--  308 (386)
                      .|..+++..+|++.++++.+..|+++..+|+..+.++|++++.++++++|+++++|+++++.++.++.|++++|.+.+  
T Consensus       240 ~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~  319 (395)
T PRK08114        240 MGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKL  319 (395)
T ss_pred             ccCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcc
Confidence            789999999999999999999999999999999999999999999999999999999999888778889999999954  


Q ss_pred             -HHhHHHHHhhcCcceeccCCCCccccccc--cccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          309 -LALSKHVVETTKYFSITVSFGSVKSLISM--PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       309 -~~~~~~l~~~l~~~gi~~~~G~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                       .+...++++.++.+.+..+.|+..+++.+  |....+.. +.++   .+..++.||+|+|.|+.+++++.|.++|++.
T Consensus       320 ~~~~~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~~~~~-~~~~---~~~~~~liRlSvGlEd~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        320 TDEQLANYLDNFSLFSMAYSWGGFESLILANQPEEIAAIR-PAGE---VDFTGTLIRLHIGLEDVDDLIADLAAGFARI  394 (395)
T ss_pred             cHHHHHHHHHhCCcceeecccCCccceeccCCchhhhccC-ChhH---hcCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence             56788999999999999999999999984  44444433 3322   2445699999999999999999999999763

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.5e-50  Score=373.90  Aligned_cols=371  Identities=27%  Similarity=0.480  Sum_probs=325.7

Q ss_pred             ccceeeccCCCCC-CCCCcccceeeeeeeecCCCC--------C-CCCccccCCCCchHHHHHHHHHhhcCCCceEEeCc
Q 016612            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (386)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (386)
                      +++++++.+...+ .+|.+.||+++++++..+...        . ...+.|++.++|...++++.++++.+.+++++++|
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~~~s   84 (394)
T PRK09028          5 KATKIVSAGRDKKWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPS   84 (394)
T ss_pred             ccceeEEcCCCCCCCCCCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence            5688889884344 359999999999998654321        1 13467999999999999999999998888999999


Q ss_pred             HHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        79 gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                      |++|++ ++.+++++||+|+++++.|+++...+...+...|+++..++..+.+++++.++++|++|++++|+||+|.+.|
T Consensus        85 G~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~d  164 (394)
T PRK09028         85 GAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQD  164 (394)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH
Confidence            999987 5677899999999999999988776656667899999999887888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCCh
Q 016612          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  237 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~  237 (386)
                      +++|+++|+++|+++++|++|+.+....|.+.|+|+++.|++||++|++++++|+++.+ +++.+.+.......|..+++
T Consensus       165 l~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~~~~p  243 (394)
T PRK09028        165 VPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQCTSP  243 (394)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCCCCCH
Confidence            99999999999999999999999988889999999999999999999999999987654 55656566666677889999


Q ss_pred             hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--CHHhHHHH
Q 016612          238 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHV  315 (386)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~l  315 (386)
                      ..+|++.++++.+..|+++..+|+..+.++|++++.++.+++|+++++|++.++.++.++.|++++|.++  +.+...+|
T Consensus       244 ~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f  323 (394)
T PRK09028        244 DDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTAL  323 (394)
T ss_pred             HHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998887888999999996  45678899


Q ss_pred             HhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ++.++...+..+.|+..+++.+|+.+++...    ....+..++.||+|+|+|+.+++++.|.++|++.
T Consensus       324 ~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svGlEd~~dLi~Dl~~Al~~~  388 (394)
T PRK09028        324 VEGMQHFKMGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIGLEDVDDLIADLEAGFERY  388 (394)
T ss_pred             HHhCCcceEecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeCcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987765433    2235666789999999999999999999999864

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=6.3e-51  Score=363.16  Aligned_cols=376  Identities=46%  Similarity=0.700  Sum_probs=347.8

Q ss_pred             ccceeeccCCCCCC--CCCccccee--eeeeeecC-CC-CCCC---CccccCCCCchHHHHHHHHHhhcCCCceEEeCcH
Q 016612            9 VSTLLMNFSNEFDP--YGALSTPLY--QTATFKQP-SA-TENG---PYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (386)
Q Consensus         9 ~~~~~~~~~~~~~~--~g~~~~~~~--~~~~~~~~-~~-~~~~---~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (386)
                      +.+..++.++.++.  .+.+.+|+.  .++.|.+. .- ....   .+.|++.|+|.+..+++.++++.|++..++++||
T Consensus        22 ~~t~~~~~g~~~~~~~~~~v~~pI~~~~s~tfk~~~~~~~~~~~~~~~~Ysr~~nPt~~~le~~iaal~ga~~~l~fsSG  101 (409)
T KOG0053|consen   22 LDTNLLHAGQDPEKAIHNAVAPPIYATLSTTFKQDLNEGEHGGNLDGYDYSRSGNPTRDVLESGIAALEGAAHALLFSSG  101 (409)
T ss_pred             cchhhhhcccccchhccccccCceecccceeecccCccccccccccccccccCCCCchHHHHHHHHHHhCCceEEEeccc
Confidence            77899999988888  799999999  67777764 22 2222   2789999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccH
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l  158 (386)
                      ++|+. ++..++++|++++..+..|.++...++.....+|++..++++++++++++.+++++++|++++|.||+..+.|+
T Consensus       102 maA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI  181 (409)
T KOG0053|consen  102 MAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDI  181 (409)
T ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhccCceEEEEECCCCCccccccH
Confidence            98886 67778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChh
Q 016612          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (386)
Q Consensus       159 ~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~  238 (386)
                      ++|+++|+++|+++++|++++.+...+++..|+||++.|.+|+++|++.+++|.++.+.+++.+.+...+...++..++.
T Consensus       182 ~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~  261 (409)
T KOG0053|consen  182 EKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPF  261 (409)
T ss_pred             HHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             hHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCCHHhHHHHHh
Q 016612          239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVE  317 (386)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~  317 (386)
                      .++...++++.+..|+++..+++..+..++++.+.++.+++++|+++|.++......++.++ ++.+...+.+...++++
T Consensus       262 ~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~~  341 (409)
T KOG0053|consen  262 DLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFYD  341 (409)
T ss_pred             HHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998876655444 55555688888999999


Q ss_pred             hcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 016612          318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       318 ~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  385 (386)
                      .++.+-...+.|+..+++++|+.++|.. +.+++.+.|+.++.||+|+|.|+.+++++.+.+||+++.
T Consensus       342 ~LK~~~~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVGiEd~~dL~~d~~~Al~~~~  408 (409)
T KOG0053|consen  342 ALKLFTKAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVGIEDIEDLIKDFQQALEKAK  408 (409)
T ss_pred             hhhhhhcccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEeccCCHHHHHHHHHHHHHhhc
Confidence            9999989999999999999999999999 999999999999999999999999999999999998763

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.1e-50  Score=378.93  Aligned_cols=384  Identities=38%  Similarity=0.603  Sum_probs=334.7

Q ss_pred             CCCCCCCCccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCC
Q 016612            1 MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKAD   71 (386)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~   71 (386)
                      |+-.++..+++..++.|.. ++.+|++.+|++++++|..++..        ....+.|++.++|....+++.++++.|.+
T Consensus         1 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~   80 (431)
T PRK08248          1 MSEERTFRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGI   80 (431)
T ss_pred             CcccccCCcchhheeCCcCCCCCCCCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCC
Confidence            4444555667889999854 34479999999999999765432        12345689999999999999999999999


Q ss_pred             ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCC
Q 016612           72 RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (386)
Q Consensus        72 ~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~n  150 (386)
                      +.++++||++|+. ++.+++++||+|+++++.|+++...+...++..|++++.++..|++++++++++++++|++++|+|
T Consensus        81 ~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~N  160 (431)
T PRK08248         81 GALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGN  160 (431)
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCC
Confidence            9999999999986 667789999999999999998887777778899999999999999999999999999999999999


Q ss_pred             CCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhH----------
Q 016612          151 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL----------  220 (386)
Q Consensus       151 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~----------  220 (386)
                      |||.+.|+++|.++|+++|+++|+|++++.+....+.+.++|+++.|++|+++|++...+|+++.+.+..          
T Consensus       161 PtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~  240 (431)
T PRK08248        161 PKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGL  240 (431)
T ss_pred             CCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccc
Confidence            9999999999999999999999999999877766677789999999999999887665666666543211          


Q ss_pred             ----------------------HHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEe
Q 016612          221 ----------------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN  278 (386)
Q Consensus       221 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  278 (386)
                                            .+.........|..+++..+|+++++++.+..|+++..+++..+.++|++++.++.++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~  320 (431)
T PRK08248        241 TEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVS  320 (431)
T ss_pred             cCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEE
Confidence                                  1112234456688999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchhhhhhcc-CCCCceEEEEe-CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          279 YAGLPEHPGHELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       279 ~~~l~~~~~~~i~~~~~-~~~~~~~~~~~-~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                      +|+++++|.+.+..++. .+.|++++|.+ ++.+...+|++.++......+.|+..+++++|+.++|..++.+.+...|+
T Consensus       321 yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi  400 (431)
T PRK08248        321 YPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGV  400 (431)
T ss_pred             CCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCC
Confidence            99999999999887654 57899999999 45567889999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          357 TEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       357 ~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      .++.||+|+|+|+.+++++.|.++|++.
T Consensus       401 ~~~liRlsvGlEd~~dL~~Dl~~Al~~~  428 (431)
T PRK08248        401 TPGLVRLSVGTEAIDDILDDLRQAIRQS  428 (431)
T ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999864

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=3.9e-50  Score=373.37  Aligned_cols=373  Identities=41%  Similarity=0.608  Sum_probs=331.2

Q ss_pred             ccceeeccCCCCCCCCCcccceeeeeeeecCCCC----CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH
Q 016612            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (386)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~   84 (386)
                      .++.+++.+..++.+|++.||++++++|..++..    ....+.|++.++|..+++|+.+++++|.++.+++++|++|+.
T Consensus         3 ~~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~   82 (385)
T PRK08574          3 RGTDAVRGYRGSDPYGSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFNSGMAAIS   82 (385)
T ss_pred             ccceeeecCCCCCCCCCccCCccCCcceecCcchhhcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            4567788775566789999999999999765431    223466999999999999999999999999999999999986


Q ss_pred             -HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHH
Q 016612           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIA  162 (386)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~  162 (386)
                       ++.+++++||+|+++.+.|+++...+..+ ...|++++.++. |++++++++++ ++++|++++|+||+|.+.|+++|.
T Consensus        83 ~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~  160 (385)
T PRK08574         83 TLFFSLLKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVA  160 (385)
T ss_pred             HHHHHHhCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHH
Confidence             56678999999999999999987666543 678999888765 68999999987 999999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHH
Q 016612          163 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       163 ~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      ++|+++|+++|+|++++.+....+...|+|+++.|++|+++|+++..+|+++++++++.+.+.......+..+++..+++
T Consensus       161 ~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l  240 (385)
T PRK08574        161 KAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYL  240 (385)
T ss_pred             HHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            99999999999999999887766777899999999999999887767887777777787777766666788889999999


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccC--CCCceEEEEeC-CHHhHHHHHhhc
Q 016612          243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLTG-SLALSKHVVETT  319 (386)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~--~~~~~~~~~~~-~~~~~~~l~~~l  319 (386)
                      ++++++.+..|+++..+++..+.++|++++.+..+.+|+++++|.+.+..++.+  +.|++++|.+. +.+...+|++.+
T Consensus       241 ~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l  320 (385)
T PRK08574        241 VLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSL  320 (385)
T ss_pred             HHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999998877654  68999999994 567788999999


Q ss_pred             CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          320 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       320 ~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      +...+..+.|+..+++++|+..+|..++.+++...|+.++.||+|+|+|+.+++++.|.++|++
T Consensus       321 ~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~  384 (385)
T PRK08574        321 KLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGLEDVEDLIEDLDQALGS  384 (385)
T ss_pred             CcceEccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999975

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1e-49  Score=371.17  Aligned_cols=379  Identities=33%  Similarity=0.511  Sum_probs=334.3

Q ss_pred             CCCCccceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 016612            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (386)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (386)
                      +.-.+++..++.|..++..|++.||++++++|..++..        ....+.|++.|+|.++++|+.++++.|.+.++++
T Consensus         3 ~~~~~~t~~~~~g~~~~~~~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~   82 (432)
T PRK06702          3 ESWGKGTICVQGGYTPKNGEPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVAT   82 (432)
T ss_pred             CCCCcchHheeCCCCCCCCCCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEE
Confidence            34456788999885445579999999999999775532        1234568888889999999999999999999999


Q ss_pred             CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-CHHHHHhhhCCCceEEEEeCCCCCCcc
Q 016612           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-DLDEVASAIGPWTKLVWVESPTNPRQQ  154 (386)
Q Consensus        77 ~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~~~~~~~~v~~~~~~nptG~  154 (386)
                      +||++|+. ++++++++||+|+++.+.|.++...+...+...|+++++++.. |+++++++++++|++|++++|+||++.
T Consensus        83 ~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~  162 (432)
T PRK06702         83 ASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNPAMN  162 (432)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEEEcCCCcccc
Confidence            99999997 5667899999999999999999877666678899999999984 999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcCh---------hH-----
Q 016612          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------RL-----  220 (386)
Q Consensus       155 ~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~---------~~-----  220 (386)
                      +.|+++|+++|+++|+++++|++++.|.+..+.+.|+||++.|++|+++|+++..+|.++....         .+     
T Consensus       163 v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~  242 (432)
T PRK06702        163 VLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDP  242 (432)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccc
Confidence            9999999999999999999999999998888999999999999999999999998988874221         11     


Q ss_pred             -----------------HHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCC
Q 016612          221 -----------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  283 (386)
Q Consensus       221 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  283 (386)
                                       .+.........+..++++.+++++++++.+..|+++..+|+..+.++|++++.+..+.+|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~  322 (432)
T PRK06702        243 SYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLD  322 (432)
T ss_pred             cccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCC
Confidence                             111122334556799999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhcc-CCCCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeE
Q 016612          284 EHPGHELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  361 (386)
Q Consensus       284 ~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  361 (386)
                      ++|.+.+..++. .+.|++++|.+. +.+.+.++++.++.+.+..+.|+..+++.+|+.++|..++.+.+...|+.++.|
T Consensus       323 ~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~li  402 (432)
T PRK06702        323 SNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLI  402 (432)
T ss_pred             CCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeE
Confidence            999999887766 678999999994 567788999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCChHHHHHHHHHHHhc
Q 016612          362 RISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       362 Ris~~~~~~~~~i~~l~~~l~~  383 (386)
                      |+|+|+|+.+++++.|.++|+-
T Consensus       403 RlSvGlEd~eDLi~Dl~~Al~~  424 (432)
T PRK06702        403 RLSVGIEDVSDIIADLEAALVG  424 (432)
T ss_pred             EEEeccCCHHHHHHHHHHHHhc
Confidence            9999999999999999999964

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=1.5e-49  Score=371.33  Aligned_cols=379  Identities=34%  Similarity=0.555  Sum_probs=333.8

Q ss_pred             CCccceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCc
Q 016612            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (386)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (386)
                      -++++..++.|...+.++...+|++.++.+..+...        ....+.|++.++|...++++.++++.|.+..+++++
T Consensus         9 ~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~~~~~s   88 (398)
T PRK07504          9 WRPATRLVHSGTLRSQFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDARATAS   88 (398)
T ss_pred             CCcccceeeCCCCCCCCCCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCeeeEecC
Confidence            345688899885556689999999998887654321        233466888888999999999999999998888999


Q ss_pred             HHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        79 gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                      |++++. ++..++++||+|+++++.|+++...+...+...|++++.++..|+++++++++++|++|++++|+||+|.+.|
T Consensus        89 G~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~lesp~NptG~v~d  168 (398)
T PRK07504         89 GMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVID  168 (398)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCcEecC
Confidence            998886 5666889999999999999988776666677889999999988999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCCh
Q 016612          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  237 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~  237 (386)
                      +++|.++|+++|+++|+|++|+.+....+...++|+++.|++|+++|++...+|+++++++.+.+.+.......+..+++
T Consensus       169 l~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~  248 (398)
T PRK07504        169 IAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSP  248 (398)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCH
Confidence            99999999999999999999998877777778999999999999987654456788877655555555545556778999


Q ss_pred             hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHH
Q 016612          238 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVV  316 (386)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~  316 (386)
                      ..+++++++++.+..|+++..++++.+.++|++++.+..+.+|+++++|++.+..++.++.|++++|.+. +.+...+|+
T Consensus       249 ~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~  328 (398)
T PRK07504        249 FNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFL  328 (398)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887777788999999994 567788999


Q ss_pred             hhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 016612          317 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       317 ~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  385 (386)
                      +.++...+..+.|+..+++.+|+.++|..++++.+...|+.++.||+|+|+|+.+++++.|.++|+++.
T Consensus       329 ~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~  397 (398)
T PRK07504        329 NALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKKVR  397 (398)
T ss_pred             HhCCcceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999998753

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.2e-49  Score=367.13  Aligned_cols=371  Identities=30%  Similarity=0.481  Sum_probs=326.6

Q ss_pred             CccceeeccCCC-CCCCCCcccceeeeeeeecCCCC----CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHH
Q 016612            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (386)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~a   82 (386)
                      .+++++++.|.. +++.|.+.||++++++|..++..    ....+.|++.|+|.++.+++.++.+.+.+..++++||++|
T Consensus        12 ~~~t~~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~sSG~aA   91 (395)
T PRK05967         12 GINTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVPSGLAA   91 (395)
T ss_pred             CcccceeeCCCCCCCCCCCccCCccCCcceecCChHHhhcccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEECcHHHH
Confidence            356888998854 44579999999999999765542    2335779988999999999999999988889999999999


Q ss_pred             HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHH
Q 016612           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (386)
Q Consensus        83 l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i  161 (386)
                      +. ++++++++||+|+++++.|+++...+...++..|+++.+++..+.++++++++++|++|++++|+||++.+.|+++|
T Consensus        92 i~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I  171 (395)
T PRK05967         92 VTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAI  171 (395)
T ss_pred             HHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHH
Confidence            87 56779999999999999999998776677889999999998878888999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHH
Q 016612          162 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (386)
Q Consensus       162 ~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (386)
                      +++|+++|+++++|++++.+....+++.|+|+++.|++|+++|++++++|+++.+ +++.+.+.......|..+++..+|
T Consensus       172 ~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~da~  250 (395)
T PRK05967        172 AEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTLGLCAGPDDTY  250 (395)
T ss_pred             HHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcC-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence            9999999999999999999988899999999999999999999999999988765 456555665666678899999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-----CHHhHHHHH
Q 016612          242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-----SLALSKHVV  316 (386)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~l~  316 (386)
                      +++++++.+..|+++..+|+..+.++|++++.++.+++|+|+++|++++..++..+.|++++|.++     +.+.+.+|+
T Consensus       251 l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~  330 (395)
T PRK05967        251 QILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFL  330 (395)
T ss_pred             HHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998877889999999995     257788999


Q ss_pred             hhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 016612          317 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       317 ~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  385 (386)
                      +.++...+..+.|+..++++++ .+     +.+.+...+..++.||||+|+|+.+++++.|.++|+++.
T Consensus       331 ~~l~l~~~~~slG~~~sLi~~~-~~-----~~~~~~~~~~~~~liRlSvGlEd~~dLi~Dl~~Al~~~~  393 (395)
T PRK05967        331 DALEIFGLGYSWGGYESLALHV-KL-----GDRTVAKAPYAGPVIRLQIGLEDVPDLKADLERGFAAAS  393 (395)
T ss_pred             HhCCcceEccCCCCcceeeeeC-CC-----ChhHhhhccCCCCeEEEEeccCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999998763 22     333333346667899999999999999999999998764

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=1.5e-49  Score=371.20  Aligned_cols=373  Identities=35%  Similarity=0.556  Sum_probs=333.4

Q ss_pred             ccceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHH
Q 016612            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (386)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt   80 (386)
                      +++.+++.+..++.+|.+.+|+++++++..++..        ....+.|++.++|..+++++.++++.|.++.+++++|+
T Consensus        16 ~~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al~~~sG~   95 (403)
T PRK07810         16 QATIGVRGGLLRSGFEETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFATASGM   95 (403)
T ss_pred             cchhheeCCCCCCCCCCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCcEEEECChH
Confidence            4678899885556678999999999988654431        12345589999999999999999999999999999999


Q ss_pred             HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHH
Q 016612           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (386)
Q Consensus        81 ~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~  159 (386)
                      +|+. ++.+++++||+|++++..|+++...+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|++
T Consensus        96 ~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~  175 (403)
T PRK07810         96 SAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIA  175 (403)
T ss_pred             HHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecCHH
Confidence            9986 556789999999999989988877777778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhh
Q 016612          160 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  239 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (386)
                      +|.++|+++|+++|+|++|+.+....+...++|+++.|++|+++|+++..+|+++++++.+.+.++......+..+++..
T Consensus       176 ~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~  255 (403)
T PRK07810        176 AVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFN  255 (403)
T ss_pred             HHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHH
Confidence            99999999999999999999888777777899999999999998877666799998866555555555556677899999


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-----HHhHHH
Q 016612          240 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LALSKH  314 (386)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~  314 (386)
                      +++++++++.+..|+++..+++..+.++|++++.+..+.+|+++++|++.++.++.++.|++++|.+.+     .+...+
T Consensus       256 a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~  335 (403)
T PRK07810        256 AWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFE  335 (403)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988888889999999953     566789


Q ss_pred             HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 016612          315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       315 l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                      |++.++...+..++|+..+++.+|+.++|..++.+++...|+.++.+|+|+|+|+.+++++.|.++|
T Consensus       336 f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGlE~~~dli~dl~~Al  402 (403)
T PRK07810        336 VLDKLRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRAL  402 (403)
T ss_pred             HHHhCCceEEeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999987

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=1.4e-49  Score=371.09  Aligned_cols=375  Identities=39%  Similarity=0.663  Sum_probs=331.1

Q ss_pred             CccceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcH
Q 016612            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (386)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (386)
                      ++++.+++.|..++.+|.+.+|+++++++......        ....+.|++.++|..+++++.+++++|.++.+++++|
T Consensus         6 ~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v~~ssG   85 (390)
T PRK08133          6 GFDTLAVRAGQLRSPFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACVATASG   85 (390)
T ss_pred             CcchhheeCCCCCCCCCCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEEEECCH
Confidence            46688899886566789999999999888765432        1234668888889999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccH
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l  158 (386)
                      ++|+. ++.+++++||+|+++++.|+++...+...++..|++++.++..|+++++++++++|++|++++|+||+|.+.|+
T Consensus        86 ~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl  165 (390)
T PRK08133         86 MAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADI  165 (390)
T ss_pred             HHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCH
Confidence            99986 56678899999999999999988777667778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChh
Q 016612          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (386)
Q Consensus       159 ~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~  238 (386)
                      ++|.++|+++|+++|+|++++.+....+...++|+++.|+||+++|++...+|+++++++ ..+.+.......+..+++.
T Consensus       166 ~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~-~~~~~~~~~~~~g~~~~~~  244 (390)
T PRK08133        166 AALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKE-LMEEVFGFLRTAGPTLSPF  244 (390)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHH-HHHHHHHHHHHhCCCCCHH
Confidence            999999999999999999998887766777789999999999997765445688877654 4444544555567788888


Q ss_pred             hHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHh
Q 016612          239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  317 (386)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~  317 (386)
                      .+++++++++.+..|+++..+++..+.++|++++.+..+++++++++|++.+..++..+.|++++|.+. +.+...+|++
T Consensus       245 ~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~  324 (390)
T PRK08133        245 NAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVID  324 (390)
T ss_pred             HHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988877889999999995 5667889999


Q ss_pred             hcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       318 ~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      .++...+..+.|+..+++.+|+.++|..++++.+...|+.++.||+|+|+|+.+++++.|+++|++
T Consensus       325 ~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~  390 (390)
T PRK08133        325 ATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLEDVADIKADLARGLAA  390 (390)
T ss_pred             hCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999964

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=2.7e-49  Score=368.85  Aligned_cols=376  Identities=38%  Similarity=0.681  Sum_probs=331.5

Q ss_pred             CccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCc
Q 016612            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (386)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (386)
                      .+++++++.|.. .+..|.+.||++++++|...+..        ....+.|++.++|..+++++.+++++|.+..+++++
T Consensus         3 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~~s   82 (391)
T TIGR01328         3 TFATRAIHAGYPPKDQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVATSS   82 (391)
T ss_pred             CcccceeeCCccCCCCCCCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence            356888998843 44579999999999999765531        223467899899999999999999999999999999


Q ss_pred             HHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        79 gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                      |++|+. ++.+++++||+|+++++.|+++...+...+...|+++++++.+|++++++++++++++|++++|+||+|.+.|
T Consensus        83 G~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~d  162 (391)
T TIGR01328        83 GMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLID  162 (391)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccC
Confidence            999987 5566889999999999999888777777778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh--hhhcCCCC
Q 016612          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGL  235 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~--~~~~~~~~  235 (386)
                      +++|.++|+++|+++|+|++++.+....+...++|+++.|++|+++++++.++|+++++ +++.+.++..  ....+..+
T Consensus       163 l~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~-~~li~~l~~~~~~~~~g~~l  241 (391)
T TIGR01328       163 MERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGK-AELLQQIRMVGIKDMTGSVI  241 (391)
T ss_pred             HHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcC-HHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999998877777778999999999999988776667888775 5555555432  22345678


Q ss_pred             ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHH
Q 016612          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKH  314 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~  314 (386)
                      ++..+++++++++.+..|+++..++++.+.++|++++.+..+++|+++++|++.++.++.++.|++++|.++ +.+...+
T Consensus       242 ~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~  321 (391)
T TIGR01328       242 SPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKK  321 (391)
T ss_pred             CcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHH
Confidence            888999999999999999999999999999999999999999999999999999988877888999999995 5566889


Q ss_pred             HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       315 l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      |++.++...+..+.|+..+++++|+.++|..++.+++...|+.++.||+|+|+|+.+++++.|.++|+++
T Consensus       322 f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  391 (391)
T TIGR01328       322 LLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLEDADDLIADLKQALDAL  391 (391)
T ss_pred             HHHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999863

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=4.8e-49  Score=368.58  Aligned_cols=383  Identities=39%  Similarity=0.629  Sum_probs=335.7

Q ss_pred             CCCCCCCCccceeeccCCC-CCCCCCcccceeeeeeeecCCCCC--------CCCccccCCCCchHHHHHHHHHhhcCCC
Q 016612            1 MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKAD   71 (386)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~y~~~g~~~~~~l~~~l~~~~g~~   71 (386)
                      |.+...-.+++..++.|.. ++..|.+.+|+++++++.......        ...+.|++.++|...++++.+++++|.+
T Consensus         1 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~   80 (400)
T PRK06234          1 MENIKKMGFATKAIHGGHIGDKQFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGE   80 (400)
T ss_pred             CcccccCCccchheECCCCCCCCCCCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCC
Confidence            4444555677888998843 455799999999999987655421        2335589888899999999999999999


Q ss_pred             ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCC
Q 016612           72 RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (386)
Q Consensus        72 ~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~n  150 (386)
                      +.+++++|++|+. ++.+++++||+|++++|.|+++...+...++..|++++.++..|++++++++++++++|++++|+|
T Consensus        81 ~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~iesP~N  160 (400)
T PRK06234         81 AAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLETPAN  160 (400)
T ss_pred             cEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEECCCC
Confidence            9999999999886 566789999999999999998877666667889999999999999999999999999999999999


Q ss_pred             CCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh-
Q 016612          151 PRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-  227 (386)
Q Consensus       151 ptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-  227 (386)
                      |+|.+.|+++|.++|+++  |+++++|++|+.+....+...++|+++.|++|+++|++..++|++++++ ++.+.++.. 
T Consensus       161 PtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~-~~~~~l~~~~  239 (400)
T PRK06234        161 PTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKE-EFINQVKLFG  239 (400)
T ss_pred             CCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecH-HHHHHHHHHH
Confidence            999999999999999997  9999999999988776677778999999999999877666679999875 455555432 


Q ss_pred             -hhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe
Q 016612          228 -QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  306 (386)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~  306 (386)
                       ....+..+++..+++..++++.+..|+++..++++.+.++|++++.++.+.+++++++|.+.+..+..++.|++++|.+
T Consensus       240 ~~~~~g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l  319 (400)
T PRK06234        240 IKDMTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFEL  319 (400)
T ss_pred             HHHhcCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEe
Confidence             3345678899999999999999999999999999999999999999999999999999999988777778899999999


Q ss_pred             C-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          307 G-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       307 ~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      + +.....+|++.++..++..+.|+..+++.+|+.++|..++++++...|+.++.||+|+|+|+.+++++.|.++|+++
T Consensus       320 ~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~  398 (400)
T PRK06234        320 KGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQALDLI  398 (400)
T ss_pred             cCcHHHHHHHHHhCCcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            5 45667899999999999999999999999999999999999999999999999999999999999999999999863

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=7.8e-49  Score=365.72  Aligned_cols=372  Identities=45%  Similarity=0.738  Sum_probs=331.1

Q ss_pred             CccceeeccCCC-CCCCCCcccceeeeeeeecCCCCC-CCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-
Q 016612            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (386)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-   84 (386)
                      .+++..++.+.. ....|.+.+|++++++|....... ...+.|++.++|...++++.++++.|.+..+++++|++|+. 
T Consensus        12 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~   91 (388)
T PRK07811         12 GFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFSSGMAATDC   91 (388)
T ss_pred             CcccceeeCCCCCCCCCCCccCCccCCcceecCCcccccCCCcccCCCCccHHHHHHHHHHHhCCCceEEeCCHHHHHHH
Confidence            456788888854 334799999999999998765432 23467888888999999999999999998999999999987 


Q ss_pred             HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHH
Q 016612           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (386)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l  164 (386)
                      ++.+++++||+|++++|.|+++...+...++..|++++.++..|++++++.+++++++|++++|+||+|.+.|+++|.++
T Consensus        92 ~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~l  171 (388)
T PRK07811         92 LLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAEL  171 (388)
T ss_pred             HHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHH
Confidence            55668999999999999999877666666778899999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH
Q 016612          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (386)
Q Consensus       165 a~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (386)
                      |+++|+++|+|++++.+....+...++|++++|++|+++|++++++|+++++++.+.+.+.......+...++..+++..
T Consensus       172 a~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~  251 (388)
T PRK07811        172 AHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTL  251 (388)
T ss_pred             HHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999988766677779999999999999988888899999887778777777666667778888999999


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcCcce
Q 016612          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFS  323 (386)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~g  323 (386)
                      ++++.+..|+++..+|++.+.++|++++.+..+.+|+++++|++..+.++..+.|++++|.++ +.+.+.+|++.++...
T Consensus       252 ~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~  331 (388)
T PRK07811        252 RGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFT  331 (388)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcce
Confidence            999999999999999999999999999999999999999999999988877889999999994 5677889999999999


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      +..++|+..+++.+|+..+|..++.+   ..|+.++.||+|+|+|+.+++++.|.++|+
T Consensus       332 ~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svGlE~~~dl~~dl~~al~  387 (388)
T PRK07811        332 LAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLADLEQALG  387 (388)
T ss_pred             eeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeCCCCHHHHHHHHHHHhh
Confidence            99999999999999999999888755   348889999999999999999999999986

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-49  Score=344.82  Aligned_cols=380  Identities=40%  Similarity=0.619  Sum_probs=344.1

Q ss_pred             CCCCccceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 016612            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (386)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (386)
                      ...++++..++.|+..+..|....|+++++.+...+..        ...++-|+|-++|....+|++++.+-|.-..+.+
T Consensus         4 ~~~~f~T~~vHag~~d~~t~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~   83 (426)
T COG2873           4 ANWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAV   83 (426)
T ss_pred             cccCcchhhhcCCCCCCCCCceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhh
Confidence            45789999999999977799999999999999887664        3557889999999999999999999998889999


Q ss_pred             CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccc
Q 016612           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (386)
Q Consensus        77 ~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~  155 (386)
                      .||++|+. +++.++++||+|+.+.--|+++...+...+++.|+++++++.+|+++++++++++||+|+++...||.+.+
T Consensus        84 aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v  163 (426)
T COG2873          84 ASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDV  163 (426)
T ss_pred             ccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccc
Confidence            99998875 88889999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHH-------------
Q 016612          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-------------  222 (386)
Q Consensus       156 ~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~-------------  222 (386)
                      .|+++|.++||++|+++|+|..++.|++..|.+.|+||++.|++||++|++..++|+++-....-+.             
T Consensus       164 ~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p  243 (426)
T COG2873         164 LDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDP  243 (426)
T ss_pred             cCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCc
Confidence            9999999999999999999999999998899999999999999999999988888887754221111             


Q ss_pred             -------------------HHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCC
Q 016612          223 -------------------ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  283 (386)
Q Consensus       223 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  283 (386)
                                         ......+-.|..++++++++.+.+++.+..|+++.-+|+..+.+||++++.+..+.+++|+
T Consensus       244 ~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~  323 (426)
T COG2873         244 SYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLA  323 (426)
T ss_pred             cccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCC
Confidence                               0011223457889999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhc-cCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeE
Q 016612          284 EHPGHELHYSQ-AKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  361 (386)
Q Consensus       284 ~~~~~~i~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  361 (386)
                      +++.+....++ +++.|++++|.+.+ .+..+++++.++.+....+-|..++++.+|++-+|.-++++.+.+.|+.++.|
T Consensus       324 ~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~I  403 (426)
T COG2873         324 SHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLI  403 (426)
T ss_pred             CCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcE
Confidence            99999887654 67899999999955 47889999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCChHHHHHHHHHHHhcC
Q 016612          362 RISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       362 Ris~~~~~~~~~i~~l~~~l~~~  384 (386)
                      |+|+|.|+++++++.|+++|+++
T Consensus       404 RlSVGIEd~~DiiaDl~qAl~~~  426 (426)
T COG2873         404 RLSVGIEDIDDIIADLEQALEAA  426 (426)
T ss_pred             EEEeccCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999864

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=7.3e-49  Score=368.34  Aligned_cols=384  Identities=36%  Similarity=0.558  Sum_probs=333.3

Q ss_pred             CCCCCCCCccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCC
Q 016612            1 MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKAD   71 (386)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~   71 (386)
                      |--+.+..+++.+++.+.. ++..|.+.+|++++++|..++..        ....+.|++.++|..+++++.++++.|.+
T Consensus         1 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~   80 (433)
T PRK08134          1 MPGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGV   80 (433)
T ss_pred             CCCCCCCCcchhheeCCCCCCCCCCCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCC
Confidence            3345677788999999844 44579999999999999765532        23356788888899999999999999999


Q ss_pred             ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCC
Q 016612           72 RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (386)
Q Consensus        72 ~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~n  150 (386)
                      .+++++||++|++ ++.+++++||+|+++...|+++...+...+...|+++++++..|+++++++++++|++|++++++|
T Consensus        81 ~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~n  160 (433)
T PRK08134         81 GAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGN  160 (433)
T ss_pred             cEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCc
Confidence            8999999999997 556689999999999999998877665666789999999999899999999999999999999999


Q ss_pred             CCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChh-----------
Q 016612          151 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-----------  219 (386)
Q Consensus       151 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~-----------  219 (386)
                      |+|.+.|+++|.++|+++|+++|+|.+++.|....+...|+|+++.|.+|+++|++.+.+|+++.....           
T Consensus       161 p~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~  240 (433)
T PRK08134        161 PGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPEL  240 (433)
T ss_pred             ccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccc
Confidence            999999999999999999999999999999988888888999999999999988877667776632110           


Q ss_pred             --------------------H-HHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEe
Q 016612          220 --------------------L-AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN  278 (386)
Q Consensus       220 --------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  278 (386)
                                          . .+.........+..+++..+++++++++.+..|+++..+++..+.++|++++.+..+.
T Consensus       241 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~  320 (433)
T PRK08134        241 TEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVA  320 (433)
T ss_pred             cCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence                                0 0001112234567899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchhhhhhcc-CCCCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          279 YAGLPEHPGHELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       279 ~~~l~~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                      +|++++++.+.+..+.. .+.|++++|.+. +.+...+|++.++......+.|+..+++++|+.++|..++.+++...|+
T Consensus       321 yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi  400 (433)
T PRK08134        321 HPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGI  400 (433)
T ss_pred             CCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCC
Confidence            99999999998877655 678999999995 4567889999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          357 TEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       357 ~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      .++.||+|+|+|+.+++++.|.++|++.
T Consensus       401 ~~~liRlsvGlE~~~dli~dl~~Al~~~  428 (433)
T PRK08134        401 GEGTIRLSIGLEDADDLIDDLKRALKAA  428 (433)
T ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999864

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=1.2e-48  Score=367.57  Aligned_cols=377  Identities=33%  Similarity=0.578  Sum_probs=329.0

Q ss_pred             CCccceeeccCCCCCC-CCCcccceeeeeeeecCCCCC------------------CCCccccCCCCchHHHHHHHHHhh
Q 016612            7 PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE------------------NGPYDYTRSGNPTRDALESLLAKL   67 (386)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~------------------~~~~~y~~~g~~~~~~l~~~l~~~   67 (386)
                      ..+++.+++.|..++. .|.+.||++++++|..++...                  ...+.|++.++|....+++.++++
T Consensus        16 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA~l   95 (427)
T PRK07049         16 LHPETQMLNYGYDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAVY   95 (427)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHHHH
Confidence            4567888988854333 799999999999997654321                  123568888999999999999999


Q ss_pred             cCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC-CCCHHHHHhhhC-----CCc
Q 016612           68 DKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIG-----PWT  140 (386)
Q Consensus        68 ~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~~~-----~~~  140 (386)
                      .|.++.+++++|++|+. ++.+++++||+|++++|.|+.+...+...++..|++++.++ ..|.+++++.+.     +++
T Consensus        96 eg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~t  175 (427)
T PRK07049         96 EGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRV  175 (427)
T ss_pred             hCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCc
Confidence            99999999999999987 55678999999999999999997665556677899865554 457788876663     579


Q ss_pred             eEEEEeCCCCCCcccccHHHHHHHHHH------cCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEE
Q 016612          141 KLVWVESPTNPRQQICDIRKIAEMAHA------HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA  214 (386)
Q Consensus       141 ~~v~~~~~~nptG~~~~l~~i~~la~~------~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~  214 (386)
                      ++|++++|+||||.+.|+++|.++++.      +++++|+|++|..+....+...++|+++.|+||+++|++|+|+|+++
T Consensus       176 klv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~vv  255 (427)
T PRK07049        176 SLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVL  255 (427)
T ss_pred             eEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEEEE
Confidence            999999999999999999999999988      79999999998877666677778999999999999888999999999


Q ss_pred             EcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCC--CCCCchhhhh
Q 016612          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL--PEHPGHELHY  292 (386)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l--~~~~~~~i~~  292 (386)
                      ++ +++.+.+.......+..+++..++++.++++.+..|+++..++++.+.++|++++.+..++++++  +++|++.+..
T Consensus       256 ~~-~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~  334 (427)
T PRK07049        256 GR-KALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYK  334 (427)
T ss_pred             CC-HHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHH
Confidence            76 55777777777777888999999999999999999999999999999999999999999999985  9999999988


Q ss_pred             hccCCCCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChH
Q 016612          293 SQAKGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN  371 (386)
Q Consensus       293 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~  371 (386)
                      ++..+.|++++|.+. +.+...+|++.++...+..++|+..+++++|+.++|..++.+++...|+.++.||+|+|+|+.+
T Consensus       335 ~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~  414 (427)
T PRK07049        335 RQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIEHPD  414 (427)
T ss_pred             hhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHH
Confidence            777889999999994 5566889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcC
Q 016612          372 DLISDLDKALRTG  384 (386)
Q Consensus       372 ~~i~~l~~~l~~~  384 (386)
                      ++++.|.++|+++
T Consensus       415 dl~~dl~~al~~~  427 (427)
T PRK07049        415 DLIADLAQALDAA  427 (427)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999864

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-48  Score=362.71  Aligned_cols=372  Identities=37%  Similarity=0.598  Sum_probs=327.2

Q ss_pred             CccceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HH
Q 016612            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (386)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~   86 (386)
                      ++++..++.|. ++.+|.+.||++++++|..++.   ..+.|++.++|..+++++.++++.|.+..+++++|++++. ++
T Consensus         2 ~~~t~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~---~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l   77 (376)
T PRK06460          2 KDATRTVREDI-DEATGAITTPIYQTTAYHYPEG---EKYRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTA   77 (376)
T ss_pred             CcceeeeecCC-CCCCCCccCCccCCcceeeCCC---CCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHH
Confidence            35677888883 4557899999999999987642   3577999999999999999999999998899999999987 45


Q ss_pred             HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHH
Q 016612           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (386)
Q Consensus        87 ~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~  166 (386)
                      .+++++||+|+++.+.|+++...+...++..|++++.++.++.+.+++.+++++++|++++|+||+|.+.|+++|.++|+
T Consensus        78 ~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~  157 (376)
T PRK06460         78 LALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCK  157 (376)
T ss_pred             HHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHH
Confidence            66899999999999999877766667778899999999887766677666788999999999999999999999999999


Q ss_pred             HcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhc
Q 016612          167 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (386)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (386)
                      ++|+++|+|++|+.+....+...++|+++.|+||+++|++++++|+++++ +++.+.+.......+...++..++.++++
T Consensus       158 ~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~-~~l~~~l~~~~~~~g~~~~~~~a~~~l~~  236 (376)
T PRK06460        158 ENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGY-GKLLNVIDQMRRTLGTSLDPHAAYLTLRG  236 (376)
T ss_pred             HcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecC-HHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence            99999999999987654445556889999999999988877889999876 55766676666666777788888888889


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcCcceec
Q 016612          247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSIT  325 (386)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~  325 (386)
                      ++.+..++++..++++.+.++|++++.++.+.+|+|+++|.+.+..+..++.|++++|.++ +.....++++.++.....
T Consensus       237 ~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~  316 (376)
T PRK06460        237 IKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPA  316 (376)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceec
Confidence            9999999999999999999999999999999999999999999988877889999999995 456788999999999999


Q ss_pred             cCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          326 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       326 ~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      .+.|+..+++.+|+.++|..++.+++.+.|+.++.||+|+|+||.+++++.|.++|+++
T Consensus       317 ~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  375 (376)
T PRK06460        317 QTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALSTL  375 (376)
T ss_pred             cCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999764

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.2e-48  Score=366.38  Aligned_cols=377  Identities=38%  Similarity=0.576  Sum_probs=329.4

Q ss_pred             CccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCc
Q 016612            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (386)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (386)
                      .++++.++.+.. .+.+|.+.||++++++|..++..        ....+.|++.++|..+++++.++++.|.+..++++|
T Consensus        13 ~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~sS   92 (436)
T PRK07812         13 SFETKQIHAGQTPDPATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLLAS   92 (436)
T ss_pred             CcchhheeCCCCCCCCCCCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEEcc
Confidence            355778888844 34479999999999999775532        123456898889999999999999999999999999


Q ss_pred             HHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC-CCCHHHHHhhhCCCceEEEEeCCCCCCcccc
Q 016612           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (386)
Q Consensus        79 gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~  156 (386)
                      |++|+. ++.+++++||+|+++...|+++...+...+...|++++.++ ..|++++++++++++++|++++|+||+|.+.
T Consensus        93 G~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~  172 (436)
T PRK07812         93 GQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVL  172 (436)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCCCCCCeec
Confidence            999986 66778999999999999999887666666778999999996 5689999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcCh------------------
Q 016612          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE------------------  218 (386)
Q Consensus       157 ~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~------------------  218 (386)
                      |+++|.++|+++|+++|+|++++.+....+...|+|+++.|++|+++|++++.+|.++.+..                  
T Consensus       173 Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~  252 (436)
T PRK07812        173 DIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSY  252 (436)
T ss_pred             CHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCccc
Confidence            99999999999999999999999888888888899999999999999988877887775321                  


Q ss_pred             -----------h-HHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCC
Q 016612          219 -----------R-LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  286 (386)
Q Consensus       219 -----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  286 (386)
                                 . +.+.........|..+++..+|+++++++.+..|+++..+++..+.++|++++.++.+.+|+++++|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p  332 (436)
T PRK07812        253 HGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSP  332 (436)
T ss_pred             ccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCc
Confidence                       0 0111123344568899999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhcc-CCCCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEE
Q 016612          287 GHELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  364 (386)
Q Consensus       287 ~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  364 (386)
                      .+.+..++. .+.|++++|.+. +.+...+++++++......+.|+..+++++|+.++|..++.+++...|+.++.||+|
T Consensus       333 ~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlS  412 (436)
T PRK07812        333 WYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLA  412 (436)
T ss_pred             cHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEE
Confidence            998887754 678999999994 456688999999999999999999999999999999999999999999999999999


Q ss_pred             eccCChHHHHHHHHHHHhcC
Q 016612          365 VGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       365 ~~~~~~~~~i~~l~~~l~~~  384 (386)
                      +|+|+.+++++.|.++|+++
T Consensus       413 vGlEd~~dli~dl~~Al~~~  432 (436)
T PRK07812        413 VGIEGIDDILADLEAGFAAA  432 (436)
T ss_pred             eccCCHHHHHHHHHHHHHhh
Confidence            99999999999999999865

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.2e-48  Score=366.90  Aligned_cols=376  Identities=37%  Similarity=0.591  Sum_probs=327.2

Q ss_pred             ccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcH
Q 016612            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (386)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (386)
                      +++..++.+.. ++..|++.+|++++++|...+..        ....+.|++.++|...++++.++++.|.+..+++++|
T Consensus         3 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG   82 (425)
T PRK06084          3 LETLAIHAGYSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVASG   82 (425)
T ss_pred             cchhheeCCcCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEehhH
Confidence            45677887743 44478999999999999765542        1234668988999999999999999999899999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccH
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l  158 (386)
                      ++|+. ++.+++++||+|+++.+.|+++...+...+...|+++..++..|++++++++++++++|++++|+||+|.+.|+
T Consensus        83 ~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl  162 (425)
T PRK06084         83 MAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIIDI  162 (425)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecCH
Confidence            99987 55668899999999999999887666666667899999999889999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChh-HH----------------
Q 016612          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LA----------------  221 (386)
Q Consensus       159 ~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~-~~----------------  221 (386)
                      ++|.++|+++|+++|+|++++.+....+...++|+++.|++|+++|++...+|+++.++.. ..                
T Consensus       163 ~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~  242 (425)
T PRK06084        163 QALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSY  242 (425)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCccc
Confidence            9999999999999999999998887777888999999999999999887777777754320 00                


Q ss_pred             ----------------HHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCC
Q 016612          222 ----------------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  285 (386)
Q Consensus       222 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  285 (386)
                                      +.........+..+++..+++++++++.+..|+++..+++..+.++|++++.+..+.+|+++++
T Consensus       243 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~  322 (425)
T PRK06084        243 HGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDH  322 (425)
T ss_pred             ccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCc
Confidence                            0001123356788999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhhccCC-CCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 016612          286 PGHELHYSQAKG-AGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  363 (386)
Q Consensus       286 ~~~~i~~~~~~~-~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  363 (386)
                      |.+.+..++.++ .|++++|.+. +.+...+|++.++...+..+.|+..+++++|..++|..++++++.+.|+.++.|||
T Consensus       323 p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~  402 (425)
T PRK06084        323 PEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRL  402 (425)
T ss_pred             ccHHHHHHhCCCCcceEEEEEecCCHHHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEE
Confidence            999988877666 7999999994 45667899999999999999999999999999999999999999999999999999


Q ss_pred             EeccCChHHHHHHHHHHHhcC
Q 016612          364 SVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       364 s~~~~~~~~~i~~l~~~l~~~  384 (386)
                      |+|+||.+++++.|.++|+++
T Consensus       403 svGlEd~~dLi~dl~~Al~~~  423 (425)
T PRK06084        403 SIGIEHIDDIIADLAQALDAS  423 (425)
T ss_pred             EeccCCHHHHHHHHHHHHHhh
Confidence            999999999999999999865

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=1.8e-48  Score=364.66  Aligned_cols=376  Identities=39%  Similarity=0.644  Sum_probs=330.4

Q ss_pred             CccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCc
Q 016612            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (386)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (386)
                      .+++.+++.+.. .+..|.+.||++++++|..++..        ....+.|++.++|..+++++.++++.|.+..+++++
T Consensus         9 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~s   88 (403)
T PRK07503          9 GFSTRAIHHGYDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALAS   88 (403)
T ss_pred             CccchheeCCCCCCCCCCCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhCCCcEEEEcC
Confidence            456888998844 34579999999999999765532        233467898888999999999999999998999999


Q ss_pred             HHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        79 gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                      |++|+. ++.+++++||+|+++.+.|+.+...+...++..|++++.++..|+++++++++++|++|++++|+||+|.+.|
T Consensus        89 G~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~d  168 (403)
T PRK07503         89 GMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVD  168 (403)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeC
Confidence            999987 4556889999999999999887766656677899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHH--hhhhcCCCC
Q 016612          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGL  235 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~--~~~~~~~~~  235 (386)
                      +++|.++|+++|+++|+|++|+.+....+...++|++++|++|+++|++++++|+++.+ +++.++++.  .....+..+
T Consensus       169 i~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~~~~~~~g~~~  247 (403)
T PRK07503        169 IAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGG-KALADRIRLEGLKDMTGAVM  247 (403)
T ss_pred             HHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcC-HHHHHHHHhhhHHhCcCCCC
Confidence            99999999999999999999988776666777899999999999988777889999854 556665653  244456788


Q ss_pred             ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHH
Q 016612          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKH  314 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~  314 (386)
                      ++.++++++++++.+..|+++..+++..+.++|++++.++.+.+|++++++.+.+..++..+.+++++|.+. +.....+
T Consensus       248 s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~  327 (403)
T PRK07503        248 SPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRR  327 (403)
T ss_pred             CHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998887777778999999994 5566789


Q ss_pred             HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       315 l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      +++.++.+....++|+..+++++|..++|..++++++...|+.++.||+|+|+|+.+++++.|.++|+++
T Consensus       328 ~~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~Al~~~  397 (403)
T PRK07503        328 FMNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGLEDVADILADLAQALDAC  397 (403)
T ss_pred             HHHhCCcceeecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence            9999999888889999999999999999999999999999999999999999999999999999999764

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=2.2e-48  Score=359.87  Aligned_cols=366  Identities=27%  Similarity=0.453  Sum_probs=315.9

Q ss_pred             eeeccCCC-CCCCCCcccceeeeeeeecCCCC----CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-H
Q 016612           12 LLMNFSNE-FDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (386)
Q Consensus        12 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~   85 (386)
                      ++++.+.. ++..|++.||++++++|..++..    ....+.|++.|+|....+|+.++++.|.+++++++||++|+. +
T Consensus         2 ~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~a   81 (377)
T TIGR01324         2 RLIHSGRQPRFSQGSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNS   81 (377)
T ss_pred             eeEECCCCCCCCCCCccCCeeCCCceeeCChhhhcCCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHH
Confidence            35666633 34479999999999999765432    234577999999999999999999999999999999999987 5


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la  165 (386)
                      +.+++++||+|+++++.|+++...+....+..|+++..++..+.++++++++++|++|++++|+||+|.+.|+++|.++|
T Consensus        82 l~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la  161 (377)
T TIGR01324        82 ILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAA  161 (377)
T ss_pred             HHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHH
Confidence            67789999999999999988866554556778999998887666889999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      +++|+++|+|++|+.|....+.+.|+|+++.|++|+++|++++.+|+++++++ ..+.+.......|..+++..++..++
T Consensus       162 ~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~-~~~~l~~~~~~~G~~l~p~~a~~~~r  240 (377)
T TIGR01324       162 RNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANAR-TWDQLREHSYLMGQMVDADDAYTTLR  240 (377)
T ss_pred             HHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHH-HHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence            99999999999999998888888999999999999999999888999988754 54555555566788999999999999


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--CHHhHHHHHhhcCcce
Q 016612          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHVVETTKYFS  323 (386)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~g  323 (386)
                      +++.+..|+++..+++..+.++|++++.++.+++|+|+++|++.+..++.++.+++++|.+.  +.+...++++.++..+
T Consensus       241 gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~  320 (377)
T TIGR01324       241 GLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFG  320 (377)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcce
Confidence            99999999999999999999999999999999999999999999887777788999999995  4566889999999999


Q ss_pred             eccCCCCccccccccc-cccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          324 ITVSFGSVKSLISMPC-FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      +..+.|+..+++..|. .++|..     +...+..++.||+|+|+|+.+++++.|.++|++
T Consensus       321 ~~~slG~~~sl~~~~~~~~~~~~-----~~~~~~~~~liR~svGlE~~~dl~~dl~~al~~  376 (377)
T TIGR01324       321 LGYSWGGYESLALCNQPELGHRP-----NIKRNLEGPLIRVHIGLENVDDLKADLKAGFEA  376 (377)
T ss_pred             EeccCCCccceeecCCCCCCHHH-----HHhccCCCCEEEEEeCCCCHHHHHHHHHHHHhc
Confidence            9999999999986332 333322     234566678999999999999999999999975

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.4e-48  Score=365.91  Aligned_cols=381  Identities=36%  Similarity=0.516  Sum_probs=331.9

Q ss_pred             CCCCCCccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCce
Q 016612            3 VEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRA   73 (386)
Q Consensus         3 ~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~   73 (386)
                      +..+..+++++++.|.. ++..|.+.||++++++|..++..        ....+.|++.++|..+.+++.++++.|.++.
T Consensus         8 ~~~~~~~~t~~~~~~~~~~~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~   87 (437)
T PRK05613          8 NADQWGFETRSIHAGQSVDSDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHA   87 (437)
T ss_pred             ccccCCcchHheeCCCCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeE
Confidence            44556677889999954 33579999999999999765532        2334679998999999999999999999999


Q ss_pred             EEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC-CCCHHHHHhhhCCCceEEEEeCCCCC
Q 016612           74 LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNP  151 (386)
Q Consensus        74 i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~~~~~~~~v~~~~~~np  151 (386)
                      ++++||++|+. ++.+++++||+|++++..|+++...+...++..|+++++++ ..|+++++++++++|++|+++++.||
T Consensus        88 v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np  167 (437)
T PRK05613         88 VAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANP  167 (437)
T ss_pred             EEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCC
Confidence            99999998886 56667899999999999999986666667788999999997 45899999999999999999999999


Q ss_pred             CcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChh------------
Q 016612          152 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER------------  219 (386)
Q Consensus       152 tG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~------------  219 (386)
                      +|.+.|+++|.++|+++|+++|+|.+++.+....+...|+|++++|++|+++|++...+|+++.+.+.            
T Consensus       168 ~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~  247 (437)
T PRK05613        168 QADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVF  247 (437)
T ss_pred             CCcccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccC
Confidence            99999999999999999999999999998887778888999999999999988766667877754220            


Q ss_pred             -----------------------HHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcce
Q 016612          220 -----------------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKK  276 (386)
Q Consensus       220 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  276 (386)
                                             ..+.........|..+++..+|++.++++.+..|+++..+|+..+.++|++++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~  327 (437)
T PRK05613        248 PYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAK  327 (437)
T ss_pred             CCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcce
Confidence                                   001112344566889999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCchhhhhhcc-CCCCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhc
Q 016612          277 VNYAGLPEHPGHELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  354 (386)
Q Consensus       277 ~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~  354 (386)
                      +.+|+++++|++.+..++. .+.|++++|.++ +.+.+.+|++.++......+.|+..+++++|+..+|..++.+.+.+.
T Consensus       328 V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~  407 (437)
T PRK05613        328 VNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARA  407 (437)
T ss_pred             EECCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhc
Confidence            9999999999999887763 567999999995 56778899999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          355 GLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       355 ~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      |+.++.||+|+|+|+.+++++.|.++|+.
T Consensus       408 Gi~~~liRlsvGlE~~~dLi~Dl~~Al~~  436 (437)
T PRK05613        408 GITQATVRLSVGIEDIDDIIADLEGGFAA  436 (437)
T ss_pred             CCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999975

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=2.2e-48  Score=363.05  Aligned_cols=372  Identities=38%  Similarity=0.643  Sum_probs=323.6

Q ss_pred             CCCccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 016612            6 EPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (386)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (386)
                      +.++++++++.|.. .+..|.+.||+++++++..++..        ....+.|++.++|..+++++.+++++|.++.+++
T Consensus         3 ~~~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~~   82 (386)
T PRK06767          3 KKHMETALIHHGYTSEEHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALAF   82 (386)
T ss_pred             CCCcccceeeCCCCCCCCCCCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEEE
Confidence            44577999999954 34479999999999999776532        2234678999999999999999999999999999


Q ss_pred             CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccc
Q 016612           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (386)
Q Consensus        77 ~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~  155 (386)
                      ++|++++. ++.+++++||+|+++++.|+++...+.......|+++..++..|++++++++++++++|++++|+||+|.+
T Consensus        83 ~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~lesp~NptG~v  162 (386)
T PRK06767         83 GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMKL  162 (386)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEeCCCCCCcee
Confidence            99998886 55678999999999999999887776666777899998898889999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCC
Q 016612          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  235 (386)
Q Consensus       156 ~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~  235 (386)
                      .|+++|.++|+++|+++++|++|+.+....+...++|+++.|++|+++|+++.++|+++++++.+.+.........+..+
T Consensus       163 ~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~  242 (386)
T PRK06767        163 IDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIM  242 (386)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999887777677789999999999999887765679999886655554455555566677


Q ss_pred             ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHH
Q 016612          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKH  314 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~  314 (386)
                      +++.+++.+++++.+..|+++..++++.+.++|++++.+..+.+|      ++.+..++.++.+++++|.++ +.....+
T Consensus       243 ~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~~~gg~vsf~l~~~~~~~~~  316 (386)
T PRK06767        243 APFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMKRGGGVISFSIKGGKEETQA  316 (386)
T ss_pred             CHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCCCCCceEEEEEcCCHHHHHH
Confidence            889899999999999999999999999999999999988777776      445555555677999999995 4566889


Q ss_pred             HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       315 l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      +++.++..++.+++|+..+++.+|+.++|..++++++...|+.++.||+|+|+|+.+++++.|.++|.+
T Consensus       317 f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~  385 (386)
T PRK06767        317 FINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQALKK  385 (386)
T ss_pred             HHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999975

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-48  Score=363.34  Aligned_cols=360  Identities=33%  Similarity=0.525  Sum_probs=316.0

Q ss_pred             CCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCC
Q 016612           23 YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTG   93 (386)
Q Consensus        23 ~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g   93 (386)
                      .|++.||+++++++...+..        ....+.|++.|+|..+++++.++++.|.+..+++++|++|+. ++.+++++|
T Consensus         7 ~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~G   86 (397)
T PRK05939          7 HGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAG   86 (397)
T ss_pred             CCCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCC
Confidence            58899999999999765432        123467999999999999999999999999999999999987 556689999


Q ss_pred             CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEE
Q 016612           94 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL  173 (386)
Q Consensus        94 ~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li  173 (386)
                      |+|+++++.|+++...+.. ++..|++++.++..|+++++++++++|++|++++|+||+|.+.|+++|.++|+++|+++|
T Consensus        87 d~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~li  165 (397)
T PRK05939         87 DHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYV  165 (397)
T ss_pred             CEEEECCCccccHHHHHHH-HHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEE
Confidence            9999999999988766643 567899999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcCh-------h--------------HHHHHHHhhhhcC
Q 016612          174 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-------R--------------LAKELYFLQNAEG  232 (386)
Q Consensus       174 ~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~-------~--------------~~~~~~~~~~~~~  232 (386)
                      +|++++.+...++...|+|+++.|++|+++|+++..+|+++.+..       .              +.+.........|
T Consensus       166 vD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  245 (397)
T PRK05939        166 VDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMG  245 (397)
T ss_pred             EECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcC
Confidence            999998887667778899999999999999887765565543211       0              1111112223567


Q ss_pred             CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhH
Q 016612          233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  312 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  312 (386)
                      ..+++..++++.++++.+..|+++..+|+..+.++|++++.++.+.+|+++++|.+.+......+.|++++|.+.+....
T Consensus       246 ~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~~~~  325 (397)
T PRK05939        246 ATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADGIDC  325 (397)
T ss_pred             CCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCHHHH
Confidence            88999999999999999999999999999999999999999999999999999999998887788999999999766678


Q ss_pred             HHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          313 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       313 ~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      .++++.++......+.|+..+++++|+..++..++.+++...|+.++.||+|+|+|+.+++++.|.++|++
T Consensus       326 ~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGlEd~~dLi~dl~~Al~~  396 (397)
T PRK05939        326 FDFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGIEDEADLIADFEQALDA  396 (397)
T ss_pred             HHHHHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999975

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=3.5e-48  Score=360.94  Aligned_cols=370  Identities=41%  Similarity=0.670  Sum_probs=327.1

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~a   82 (386)
                      +..++.|...+.+|.+.+|+++++++..++..        ....+.|++.++|...++++.+++++|.++.+++++|++|
T Consensus         2 t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~sG~~A   81 (380)
T TIGR01325         2 TLAIRGGKERTEFREHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATATGMSA   81 (380)
T ss_pred             ceeEECCCCCCCCCCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECCHHHH
Confidence            45677775456688899999999998654421        2334668888889999999999999999999999999999


Q ss_pred             HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHH
Q 016612           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (386)
Q Consensus        83 l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i  161 (386)
                      +. ++.+++++||+|+++++.|+++...+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|+++|
T Consensus        82 i~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I  161 (380)
T TIGR01325        82 IQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAAL  161 (380)
T ss_pred             HHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHH
Confidence            87 55668899999999999998887666677788999999999999999999998899999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHH
Q 016612          162 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (386)
Q Consensus       162 ~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (386)
                      .++|+++|+++|+|++|+.+....+...++|+++.|++|+++|++...+|++++++ ++.+.+.......+..+++..++
T Consensus       162 ~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~-~~~~~l~~~~~~~g~~~~p~~a~  240 (380)
T TIGR01325       162 AELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSE-ELMAEVAVYLRHTGPAMSPFNAW  240 (380)
T ss_pred             HHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCH-HHHHHHHHHHHhhCCCCCHHHHH
Confidence            99999999999999999877766677789999999999999887655678888764 45555655555667788889999


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc
Q 016612          242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  321 (386)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  321 (386)
                      +++++++.+..|+++..++++.+.++|++++.++.+.+|++++.|.+.+..++..+.|++++|.+.+.+...+|++.++.
T Consensus       241 ~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~l~~  320 (380)
T TIGR01325       241 VLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADRAAAWKVLDAVEL  320 (380)
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999999999999998887788899999999877778999999999


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                      ..+..+.|+..+++.+|+.++|..++++++...|+.++.||+|+|.|+.+++++.|+++|
T Consensus       321 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al  380 (380)
T TIGR01325       321 VSITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVGLEDVDDLIADLKRAL  380 (380)
T ss_pred             ceEcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999986

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=2.4e-48  Score=361.57  Aligned_cols=359  Identities=54%  Similarity=0.866  Sum_probs=324.6

Q ss_pred             CCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCC
Q 016612           24 GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE   94 (386)
Q Consensus        24 g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~   94 (386)
                      |.+.||+++++++..++..        ....+.|++.++|...++++.+++++|.++.++++||++|+. ++.+++++||
T Consensus         1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd   80 (369)
T cd00614           1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGD   80 (369)
T ss_pred             CCcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCC
Confidence            4678899999998765532        234577898899999999999999999999999999999987 5566889999


Q ss_pred             EEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEE
Q 016612           95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (386)
Q Consensus        95 ~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~  174 (386)
                      +|+++.+.|+++...+...++..|+++..++.+|++++++++++++++|++++|+||+|.+.|+++|.++|+++|+++++
T Consensus        81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~liv  160 (369)
T cd00614          81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVV  160 (369)
T ss_pred             EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence            99999999999877766677789999999999999999999988999999999999999999999999999999999999


Q ss_pred             eCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHH
Q 016612          175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV  254 (386)
Q Consensus       175 D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (386)
                      |++++.+....+...++|+++.|++|+++|++.+++|+++++++++.+.+.......+..+++..+++++++++.+..|+
T Consensus       161 D~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~  240 (369)
T cd00614         161 DNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM  240 (369)
T ss_pred             ECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHHH
Confidence            99999888767777899999999999998887788999999875677777766666778889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKS  333 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~  333 (386)
                      ++..++++.+.++|++++.+..+.++++++.|.++++.+..++.+++++|.+. +.+...++++.++...+..+.|+..+
T Consensus       241 ~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~s  320 (369)
T cd00614         241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVES  320 (369)
T ss_pred             HHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCce
Confidence            99999999999999999988899999999999999888777788999999995 67778999999999999999999999


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      ++++|+..+|..++.+++...|+.++.||+|+|.|+.+++++.|.++|+
T Consensus       321 l~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGlE~~~dl~~dl~~al~  369 (369)
T cd00614         321 LVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDLIADLEQALK  369 (369)
T ss_pred             eeeCCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999974

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=3.8e-48  Score=364.52  Aligned_cols=379  Identities=38%  Similarity=0.592  Sum_probs=330.4

Q ss_pred             CCCccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 016612            6 EPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (386)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (386)
                      ++.+++.+++.+.. +.+.|.+.+|+++++++..++..        ....+.|++.++|...++++.++++.|.+..+++
T Consensus         5 ~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~   84 (427)
T PRK05994          5 SPGFATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAV   84 (427)
T ss_pred             CCCcchhheECCcCCCCCCCCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEE
Confidence            34577889998833 44478999999999998765432        1223568888889999999999999999999999


Q ss_pred             CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccc
Q 016612           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (386)
Q Consensus        77 ~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~  155 (386)
                      +||++|+. ++.+++++||+|+++.+.|++....+...+...|++++.++..|++++++++++++++|++++|+||+|.+
T Consensus        85 ~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v  164 (427)
T PRK05994         85 ASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTV  164 (427)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCee
Confidence            99999987 55668999999999999999887666666778999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcCh-----------------
Q 016612          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----------------  218 (386)
Q Consensus       156 ~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~-----------------  218 (386)
                      .|+++|.++|+++|+++|+|++++.+....+...++|+++.|++|+++|+++..+|+++....                 
T Consensus       165 ~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~  244 (427)
T PRK05994        165 TDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRP  244 (427)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcc
Confidence            999999999999999999999999888878888899999999999999988877887774221                 


Q ss_pred             h-----HHHH----------HHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCC
Q 016612          219 R-----LAKE----------LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  283 (386)
Q Consensus       219 ~-----~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  283 (386)
                      .     +.+.          ........|..+++.+++++.++++.+..|+++..+++..+.++|++++.++.+.+|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~  324 (427)
T PRK05994        245 EYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLP  324 (427)
T ss_pred             hhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence            0     1111          011233457789999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhc-cCCCCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeE
Q 016612          284 EHPGHELHYSQ-AKGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  361 (386)
Q Consensus       284 ~~~~~~i~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  361 (386)
                      ++|++.+..++ ..+.|++++|.+. +.+...++++.++...+..++|+..+++++|+.++|..++.+++...|+.++.|
T Consensus       325 ~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~li  404 (427)
T PRK05994        325 DDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVV  404 (427)
T ss_pred             CCccHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcE
Confidence            99999998776 4678999999994 556788999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCChHHHHHHHHHHHhcC
Q 016612          362 RISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       362 Ris~~~~~~~~~i~~l~~~l~~~  384 (386)
                      |+|+|+|+.+++++.|.++|+++
T Consensus       405 RlsvGlE~~~dli~dl~~Al~~~  427 (427)
T PRK05994        405 RLSIGIEDVDDIIADLEQALAKA  427 (427)
T ss_pred             EEEeccCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999864

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.6e-47  Score=356.93  Aligned_cols=373  Identities=27%  Similarity=0.439  Sum_probs=326.5

Q ss_pred             CCccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeC
Q 016612            7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (386)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (386)
                      ..+++.+++.|.. .+..|.+.+|++++++|..++..        ....+.|++.++|..+++++.++++.|.+++++++
T Consensus         8 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~~   87 (394)
T PRK07050          8 RALQTRIVQPDDQIPPGFRSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQP   87 (394)
T ss_pred             CCccchheECCCCCCCCCCCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEEec
Confidence            3456888998844 34479999999999999776542        23356799999999999999999999999999999


Q ss_pred             cHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccc
Q 016612           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (386)
Q Consensus        78 ~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~  156 (386)
                      ||++|+. ++.+++++||+|+++++.|+++...+...+...|++++.++..+.++++++++++|++|++++|+||+|.+.
T Consensus        88 sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~  167 (394)
T PRK07050         88 SGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVP  167 (394)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccHh
Confidence            9999987 556689999999999999999877666677889999999998788899999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCC
Q 016612          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (386)
Q Consensus       157 ~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~  236 (386)
                      ++++|.++|+++|+++++|++|+.+....+...|+|+++.|++|+++|+.++++|+++++++++.++++......|..++
T Consensus       168 di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~  247 (394)
T PRK07050        168 DVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVS  247 (394)
T ss_pred             hHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999988888888899999999999999888888999998888888878777777788999


Q ss_pred             hhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC---HHhHH
Q 016612          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSK  313 (386)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~  313 (386)
                      ++.+++++++++.+..|+++..+++..+.++|++++.+..+.+++++++|.+....++..+.+++++|.++.   .+..+
T Consensus       248 ~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~  327 (394)
T PRK07050        248 ADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVD  327 (394)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999998887776666789999999953   46789


Q ss_pred             HHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 016612          314 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       314 ~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  385 (386)
                      ++++.++..++..++|+..+++. |+..++.... +    ....++.||+|+|+|+.+++++.|.++|+++.
T Consensus       328 ~~~~~l~~~~~~~s~G~~~sl~~-~~~~~~~~~~-~----~~~~~~~iR~svGlE~~~dl~~dl~~al~~~~  393 (394)
T PRK07050        328 AFVEALELFAIGWSWGGACSLAM-PYDVASMRTA-K----WPHRGTLVRLYIGLEDEADLIADLEQALEAAL  393 (394)
T ss_pred             HHHHcCCCCeeccccCCccceEe-eCcccccchh-h----cCCCCCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999987 7765554432 1    12456899999999999999999999998753

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=5.2e-47  Score=349.52  Aligned_cols=359  Identities=41%  Similarity=0.683  Sum_probs=315.0

Q ss_pred             CCCccceeeccCCCC-CCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH
Q 016612            6 EPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (386)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~   84 (386)
                      +..+++.+++.|... ...|.+.||++++++|..++......+.|++.++|...++++.++++.|.+++++++||++|+.
T Consensus         4 ~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~   83 (364)
T PRK07269          4 DLHINTILAQAGIKSDEATGALVTPLHFSTTYQHPEFGQSTGFDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAIV   83 (364)
T ss_pred             cCCcccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCcceeCCCCccHHHHHHHHHHHhCCCeEEEeCCHHHHHH
Confidence            345678889988543 3478999999999999876644444577999999999999999999999999999999999998


Q ss_pred             HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHH
Q 016612           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (386)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l  164 (386)
                      +++.++++||+|+++.+.|++....+.......++++.+.  .|+++++++++++|++|++++|+||+|.+.|+++|+++
T Consensus        84 ~~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~l  161 (364)
T PRK07269         84 LAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKL  161 (364)
T ss_pred             HHHHHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHH
Confidence            6667789999999999999988765544444445544443  48999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH
Q 016612          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (386)
Q Consensus       165 a~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (386)
                      |+++|+++++|++|+.+....+...++|+++.|++|+++|++.+.+|+++++++++.+.+.......|..+++..++++.
T Consensus       162 a~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~  241 (364)
T PRK07269        162 AHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLM  241 (364)
T ss_pred             HHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999888777788889999999999999998887799999887778777766665667789999999999


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCccee
Q 016612          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSI  324 (386)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi  324 (386)
                      ++++.+..|+++..+++..+.++|++++.+..+++++                .+++++|.+.+.+...++++.++...+
T Consensus       242 ~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg----------------~gg~~sf~~~~~~~~~~f~~~l~~~~~  305 (364)
T PRK07269        242 RGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG----------------KGGMISFKVADETRIPHILNSLKVFTF  305 (364)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC----------------cCcEEEEEECCHHHHHHHHHhCCcceE
Confidence            9999999999999999999999999998877777764                378999999777778899999999999


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      ..+.|+..+++.+|+..++..++++.+...|+.++.||+|+|.|+.+++++.|.++|+
T Consensus       306 ~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGlE~~~dli~dl~~al~  363 (364)
T PRK07269        306 AESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQALE  363 (364)
T ss_pred             ccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999985

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=6.4e-47  Score=356.27  Aligned_cols=373  Identities=39%  Similarity=0.609  Sum_probs=321.3

Q ss_pred             ccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcH
Q 016612            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (386)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (386)
                      +++.+++.+.. +...|.+.||+++++++..+...        ....+.|++.++|..+++++.+++++|.++.+++++|
T Consensus         2 ~~t~~~~~~~~~~~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~sG   81 (418)
T TIGR01326         2 FETLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVASG   81 (418)
T ss_pred             ccceeEECCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEccH
Confidence            45778888844 34468999999999998765432        1223568999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccH
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l  158 (386)
                      ++|+. ++.+++++||+|+++++.|+++...+...++..|++++.++..|++++++.+++++++|++++|+||+|.+.|+
T Consensus        82 ~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl  161 (418)
T TIGR01326        82 QAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDI  161 (418)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCH
Confidence            99986 55678999999999999998887777677788999999999889999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHH-----------------
Q 016612          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-----------------  221 (386)
Q Consensus       159 ~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~-----------------  221 (386)
                      ++|.++|+++|+++|+|++++.+....+...++|+++.|++|+++|+ |.+.|+++++++.+.                 
T Consensus       162 ~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~-G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~  240 (418)
T TIGR01326       162 EAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGH-GTAIGGVIVDGGKFDWANGRFPLFTTPDPSYH  240 (418)
T ss_pred             HHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCC-ccceEEEEEecccccccccccccccCCCCccc
Confidence            99999999999999999999887766677778999999999999765 456777666532210                 


Q ss_pred             ---------------HHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCC
Q 016612          222 ---------------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  286 (386)
Q Consensus       222 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  286 (386)
                                     +.........|..+++..++.+.++++.+..|+++..+++..+.++|.+++.+..+.+|+++++|
T Consensus       241 a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~  320 (418)
T TIGR01326       241 GLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHP  320 (418)
T ss_pred             cchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCc
Confidence                           11111223346677899999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhcc-CCCCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEE
Q 016612          287 GHELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  364 (386)
Q Consensus       287 ~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  364 (386)
                      .+.+..++. .+.|++++|.+. +.+...++++.++......++|+..+++++|+.++|..++.+++...|+.+++||||
T Consensus       321 ~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~s  400 (418)
T TIGR01326       321 HHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLS  400 (418)
T ss_pred             cHHHHHHhccCCCcceEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCCCeEEEE
Confidence            998887665 678999999994 556678999999999999999999999999999999999999999999999999999


Q ss_pred             eccCChHHHHHHHHHHHh
Q 016612          365 VGIEDVNDLISDLDKALR  382 (386)
Q Consensus       365 ~~~~~~~~~i~~l~~~l~  382 (386)
                      +|+|+.+++++.|.++|+
T Consensus       401 vGlE~~~dl~~dl~~Al~  418 (418)
T TIGR01326       401 VGIENIDDIIADLEQALE  418 (418)
T ss_pred             ecCCCHHHHHHHHHHhhC
Confidence            999999999999999984

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=1.5e-46  Score=348.56  Aligned_cols=361  Identities=42%  Similarity=0.718  Sum_probs=318.4

Q ss_pred             CccceeeccCCC-CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHH
Q 016612            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (386)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~   86 (386)
                      .+++..++.|.. +...|.+.||++++++|..++......+.|++.++|...++++.++++.|.+..++++||++++.++
T Consensus         4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~   83 (366)
T PRK08247          4 TIETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIGESTGFDYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLV   83 (366)
T ss_pred             CcchhheeCCCCCCCCCCCccCCcccCcccccCCCCCcCCccccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHH
Confidence            456778888844 3347999999999999977654334457799999999999999999999999889999999999877


Q ss_pred             HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHH
Q 016612           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (386)
Q Consensus        87 ~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~  166 (386)
                      +.++++||+|++++|.|++....+...++..|++++.++..|++++++++++++++|++++|+||+|...++++|.++|+
T Consensus        84 ~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~  163 (366)
T PRK08247         84 MSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAK  163 (366)
T ss_pred             HHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence            78889999999999999998777777778899999999999999999999999999999999999999999999999999


Q ss_pred             HcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhc
Q 016612          167 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (386)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (386)
                      ++|+++|+|++|+.+....+...++|+++.|++|+++|++++++|+++++++.+.+.+...+...+..+++..++++.++
T Consensus       164 ~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~  243 (366)
T PRK08247        164 KHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRG  243 (366)
T ss_pred             HcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhc
Confidence            99999999999988877667677899999999999999888899999987667777777777777777888899999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceecc
Q 016612          247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITV  326 (386)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~  326 (386)
                      ++.+..|+++..++++.+.++|++++.+..+.+++                .|++++|.+++.+...++++.++...+..
T Consensus       244 l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~----------------~gg~~sf~~~~~~~~~~~~~~l~~~~~~~  307 (366)
T PRK08247        244 MKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG----------------RGGMLSFRLQDEEWVNPFLKSLKLITFAE  307 (366)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC----------------cCcEEEEEECCHHHHHHHHHcCCcceEcc
Confidence            99999999999999999999999887554444432                47899999877777789999999999999


Q ss_pred             CCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          327 SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       327 ~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      +.|+..+++.+|+.+++..++++.+...|+.++.+|+|+|+|+.+++++.|.++|+++
T Consensus       308 slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGlE~~~dl~~dl~~al~~~  365 (366)
T PRK08247        308 SLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGIENVEDLIADLKQAFKQV  365 (366)
T ss_pred             CCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999899999999999999999999999999999863

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=2e-46  Score=345.77  Aligned_cols=365  Identities=35%  Similarity=0.595  Sum_probs=321.5

Q ss_pred             ccceeeccCCC-CCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcH
Q 016612            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (386)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (386)
                      +++..++.+.. ...+|.+.+|+++++++......        ....+.|++.++|..+++|+.++++.|.+.+++++||
T Consensus         9 ~~t~~~~~~~~~~~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~~sSG   88 (384)
T PRK06434          9 FNTRAVQSGELRDPRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALSFSSG   88 (384)
T ss_pred             cccceeECCCCCCCCCCCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEEeCCH
Confidence            56778888844 33479999999999998764431        1234678999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC-CCceEEEEeCCCCCCccccc
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~  157 (386)
                      ++|++ ++.+++++||+|+++.+.|+++...+...+...|+++++++.++.+.+.  ++ +++++|++++++||++.+.|
T Consensus        89 ~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~D  166 (384)
T PRK06434         89 MGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVPD  166 (384)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceeec
Confidence            99997 5677899999999999999988877767788999999999987655555  44 47999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCCh
Q 016612          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  237 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~  237 (386)
                      +++|.++|++++  +++|.+++.+....+...++|++++|.+|+++|++++.+|+++++++++.+.+.......|..+++
T Consensus       167 i~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~  244 (384)
T PRK06434        167 IKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDP  244 (384)
T ss_pred             HHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCH
Confidence            999999999998  567999988888888888999999999999999887789999888777777766665566788899


Q ss_pred             hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHh
Q 016612          238 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  317 (386)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~  317 (386)
                      .++++.+++++.+..|+++..+++..+.++|+.++.++.+++|+++      ++.+..++.|++++|.+++.+.+.+|++
T Consensus       245 ~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~g~g~~~sf~l~~~~~~~~f~~  318 (384)
T PRK06434        245 IQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLRGFGGMLSFELRSMEDVHKFIR  318 (384)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcCCCCceEEEEECCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999985      4445556789999999977777889999


Q ss_pred             hcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       318 ~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      .++...+..+.|+..+++++|+.++|..++++++...|+.++.||+|+|+|+.+++++.|.++|.+
T Consensus       319 ~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGlEd~~dLi~dl~~Al~~  384 (384)
T PRK06434        319 NLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGIEDIDDLIKDIENALSK  384 (384)
T ss_pred             hCCcceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999974

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=4.7e-46  Score=344.71  Aligned_cols=363  Identities=35%  Similarity=0.530  Sum_probs=311.0

Q ss_pred             CCccceeeccCCC-CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-
Q 016612            7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (386)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-   84 (386)
                      +++++++++.+.. .+.+|.+.+|+++++++..+.......+.|+++++|...++++.++++. .++.+++++|++++. 
T Consensus         2 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~   80 (366)
T PRK07582          2 YGDGTRSVHAGGPEAVPGEPVLPGPVFAAPYHLSPGEPTGPDTYGRASNPTWRALEAALGELE-GAEALVFPSGMAAITA   80 (366)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCccccceEEccCccccCCceeECCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHHH
Confidence            5778889998854 3347999999999999987643333456799999999999999999999 578999999999987 


Q ss_pred             HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHH
Q 016612           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (386)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l  164 (386)
                      ++.+++++||+|++++|.|+++...+...++..|++++.++..+...   .+.+++++|++++|+||+|.+.|+++|.++
T Consensus        81 ~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~~t~lV~le~p~NPtg~v~di~~I~~~  157 (366)
T PRK07582         81 VLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALAGADLVLAETPSNPGLDVCDLAALAAA  157 (366)
T ss_pred             HHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---HhccCceEEEEECCCCCCCCccCHHHHHHH
Confidence            45668999999999999998887655555667899999999765432   334689999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH
Q 016612          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (386)
Q Consensus       165 a~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (386)
                      |+++|+++++|++|+.+....+.+.++|+++.|++|+++|++|+++|+++++++++.+.+.......+..++++.++++.
T Consensus       158 a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~  237 (366)
T PRK07582        158 AHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAH  237 (366)
T ss_pred             HHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999765555566678999999999999999999999999877778777777777777888999999999


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCccee
Q 016612          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSI  324 (386)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi  324 (386)
                      ++++.+..|+++..+++..+.++|++++.+..+.+|+++++|++....++.++.|++++|.+++.+...++++.++....
T Consensus       238 r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l~~~~~  317 (366)
T PRK07582        238 RSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVVA  317 (366)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhCCccee
Confidence            99999999999999999999999999999999999999999999999888888999999999888888899999999888


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+.|+..+++..+...           ..+++++.||+|+|.|+.+++++.|.++|+++
T Consensus       318 ~~s~G~~~sl~~~~~~~-----------~~~~~~~liR~svGlE~~~dli~dl~~al~~~  366 (366)
T PRK07582        318 ATSFGGVHTSADRRARW-----------GDAVPEGFVRLSCGIEDTDDLVADLERALDAL  366 (366)
T ss_pred             cccCCCccchhhhHHHc-----------CCCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            99999987766433211           11245789999999999999999999999863

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=4.4e-46  Score=348.83  Aligned_cols=372  Identities=30%  Similarity=0.454  Sum_probs=318.0

Q ss_pred             ccceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CC----CCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 016612            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------EN----GPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (386)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~----~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (386)
                      +-+..++.+...+..+.+.||+++++++..++..        ..    ..+.|++.++|..+++++.+++++|.+..+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~   97 (418)
T PLN02242         18 PAAALASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCT   97 (418)
T ss_pred             hHHHHhcCCCCCCCCCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence            4477889896666568889999999999776532        11    23569999999999999999999999999999


Q ss_pred             CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhh-cccCCcEEEEeCCCCHHHHHhhhCC-CceEEEEeCCCCCCc
Q 016612           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQ  153 (386)
Q Consensus        77 ~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~d~~~l~~~~~~-~~~~v~~~~~~nptG  153 (386)
                      +||++|+. ++.+++++||+|++++|.|+++...+... .+..|++++.++..|++++++++++ ++++|++++|+||||
T Consensus        98 ~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG  177 (418)
T PLN02242         98 ASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTL  177 (418)
T ss_pred             ccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCC
Confidence            99999987 56678999999999999998886554333 3458999999998899999999987 599999999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh----
Q 016612          154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN----  229 (386)
Q Consensus       154 ~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~----  229 (386)
                      .+.|+++|.++|+++|+++|+|++|+. ...++...++|+++.|+||+++|++..++|++++++ .+.+.+.....    
T Consensus       178 ~v~dl~~I~~la~~~gi~livDea~~~-~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~-~li~~l~~~~~~~~~  255 (418)
T PLN02242        178 TVADIPELARIAHEKGVTVVVDNTFAP-MVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-ELVNSMMDLHHGALM  255 (418)
T ss_pred             cccCHHHHHHHHHHhCCEEEEECCCCc-cCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCH-HHHHHHHHHhhhhhh
Confidence            999999999999999999999999963 334556668999999999999887666689999764 45555554422    


Q ss_pred             hcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhcc---CCCCceEEEEe
Q 016612          230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA---KGAGSVLSFLT  306 (386)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~~~~~~~  306 (386)
                      ..+..+++..+++...+++.+..|++++.++++.+.++|++++  ..+.+|+|+++|++.++.++.   .+.|++++|.+
T Consensus       256 ~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~--~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l  333 (418)
T PLN02242        256 LLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDM  333 (418)
T ss_pred             ccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC--CEEECCCCCCCccHHHHHHhcccCCCceeEEEEEE
Confidence            3456777888888889999999999999999999999999985  388999999999999887665   47899999999


Q ss_pred             CCHHhHHHHHhhcCcc----eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCC-hHHHHHHHHHHH
Q 016612          307 GSLALSKHVVETTKYF----SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKAL  381 (386)
Q Consensus       307 ~~~~~~~~l~~~l~~~----gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~-~~~~i~~l~~~l  381 (386)
                      .+.+...+|++.++..    .+..+.|+..+++.+|+.+++..++.+++...|+.+++||||+|+|+ .+++++.|.++|
T Consensus       334 ~~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~~dli~dl~~al  413 (418)
T PLN02242        334 DTEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLEQRWSQFEKAL  413 (418)
T ss_pred             CCHHHHHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            8777889999999866    67899999999999999999999999999999999999999999995 999999999999


Q ss_pred             hcC
Q 016612          382 RTG  384 (386)
Q Consensus       382 ~~~  384 (386)
                      ++.
T Consensus       414 ~~~  416 (418)
T PLN02242        414 SAM  416 (418)
T ss_pred             HHh
Confidence            864

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-44  Score=336.47  Aligned_cols=366  Identities=34%  Similarity=0.539  Sum_probs=315.9

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~a   82 (386)
                      ..+++..-....+|++.||++++++|..++..        ....+.|++.++|..+++++.+++++|.+..+++++|++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~A   90 (389)
T PRK05968         11 AALITAHDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAA   90 (389)
T ss_pred             hheeecCCCccCCCCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCHHHH
Confidence            34566664455689999999999999775532        2334668888889999999999999999999999999999


Q ss_pred             HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHH
Q 016612           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (386)
Q Consensus        83 l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i  161 (386)
                      +. ++.+++++||+|+++.+.|+++...+...+...|++++.++..|++++++++ +++++|++++|+|+++.+.|+++|
T Consensus        91 i~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i  169 (389)
T PRK05968         91 ISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFELQDVAAL  169 (389)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHH
Confidence            86 5666889999999999999988777767778899999999999999999988 679999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh-hhcCCCCChhhH
Q 016612          162 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDC  240 (386)
Q Consensus       162 ~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~  240 (386)
                      .++|+++|+++|+|++++.+....+...+.|+++.|++|+++|++++++|+++.++ ++.+.+.... ...+..+++..+
T Consensus       170 ~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~-~~~~~l~~~~~~~~g~~~~~~~A  248 (389)
T PRK05968        170 AALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSK-EHIARINAEAYPYLGAKLSPFEA  248 (389)
T ss_pred             HHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECH-HHHHHHHHHHHHhCCCCCChHHH
Confidence            99999999999999999888766677789999999999999988888899998764 4544444332 235567889999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC
Q 016612          241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK  320 (386)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  320 (386)
                      ++++.+++.+..|+++..++++.+.++|++++.++.+.+++++++|..     ...+.+++++|.+++.....++++.++
T Consensus       249 ~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~-----~~~g~g~~~sf~~~~~~~~~~f~~~L~  323 (389)
T PRK05968        249 WLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPA-----GLSGTSGLFSFIFREGIDVRAFADALK  323 (389)
T ss_pred             HHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHH-----hCCCCceEEEEEECCHHHHHHHHHhCC
Confidence            999999999999999999999999999999999989999999887732     235678999999975556889999999


Q ss_pred             cceeccCCCCccccccccccccCCC-CCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          321 YFSITVSFGSVKSLISMPCFMSHAS-IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       321 ~~gi~~~~G~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ..++.++.|+..++++ |+..++.. .+.+++...|+.++.||+|+|+|+.+++++.|+++|+++
T Consensus       324 ~~~~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~~  387 (389)
T PRK05968        324 LFRLGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAA  387 (389)
T ss_pred             ccEEecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            9999999999999998 99888888 457888899999999999999999999999999999875

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.6e-32  Score=252.74  Aligned_cols=291  Identities=23%  Similarity=0.276  Sum_probs=205.6

Q ss_pred             cccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCc-HHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           48 DYTRS-GNP-TRDALESLLAKLDKAD----RALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        48 ~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~-gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      .|.+. |.+ +|+++.+++.+.+|.+    +.|++|. +++|+. +++++++|||+|++++|.|+.+.    ......|.
T Consensus        60 ~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~----~~~~~~gg  135 (393)
T COG0436          60 HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYE----AAVKLAGG  135 (393)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcCC
Confidence            55566 987 8999999999998743    4355555 559987 67789999999999999999996    56678889


Q ss_pred             EEEEeCCC--------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          120 VVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       120 ~~~~v~~~--------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      +++.++..        |+++++++++++||+|++++||||||.+++   +++|+++|++||++||.||+|..-.+.    
T Consensus       136 ~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~  215 (393)
T COG0436         136 KPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEH  215 (393)
T ss_pred             EEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCc
Confidence            98888841        699999999999999999999999999985   889999999999999999998632221    


Q ss_pred             -CCCC----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc------HHHH
Q 016612          185 -RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALR  253 (386)
Q Consensus       185 -~~~~----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  253 (386)
                       +...    .+..|++.|+||.+ +.+|+|+||++++++.+.+.+..++.....+.+...+.++..+++.      ....
T Consensus       216 ~s~~~~~~~~~~~i~i~s~SK~~-~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~  294 (393)
T COG0436         216 PSILELAGARDRTITINSFSKTY-GMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEM  294 (393)
T ss_pred             CCHhhcCCCcceEEEEecccccc-cccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHH
Confidence             1111    24579999999999 5789999999998677777776666666556666666666555542      2222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE-eC----CHHhHHHHHhhcCcceeccCC
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TG----SLALSKHVVETTKYFSITVSF  328 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~----~~~~~~~l~~~l~~~gi~~~~  328 (386)
                      .+.+.++.+.+.+.+.+..              ++.+..   ...|.++.|. ++    +.+++.+++++.   |+.+.+
T Consensus       295 ~~~~~~rrd~l~~~l~~~~--------------g~~~~~---~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~---gV~v~P  354 (393)
T COG0436         295 REEYRERRDLLVEALNEIG--------------GLSVVK---PPEGAFYLFPKIPELLDSEEFAKKLLEEA---GVAVVP  354 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcC--------------Ceeecc---CCCeeEEEEeecCCCCCHHHHHHHHHHhC---CEEEec
Confidence            2345555555555555443              222221   0124455554 43    345666666665   566666


Q ss_pred             CCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          329 GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       329 G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      |..+..                    ..++++||+|++.  +..++.++++.+.++.
T Consensus       355 G~~Fg~--------------------~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~  391 (393)
T COG0436         355 GSGFGE--------------------PPGEGYVRLSLATSEETLEEALRRLARFLAE  391 (393)
T ss_pred             ccccCC--------------------CCCCCeEEEEEecCHHHHHHHHHHHHHHHHh
Confidence            665321                    0146899999965  6666666677666654

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-31  Score=245.47  Aligned_cols=300  Identities=27%  Similarity=0.370  Sum_probs=218.8

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHH-HHHHHHHH-h---cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGM-AALAAVTH-L---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt-~al~~~~~-~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..++.++.+++++|++  +.|+++.|+ ++++.+.. +   +++||+|++++.+|++....|..++++.|++++.++.+ 
T Consensus        67 ~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~  146 (405)
T COG0520          67 LYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDD  146 (405)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCC
Confidence            5778999999999987  677777776 99986544 4   68999999999999999999999999999999999964 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                          +.++++..++++|++|.+++.+|.||.+.|+++|+++||++|+++++|.+|+.|+.+ +..+.++|++++|.|||+
T Consensus       147 ~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl  226 (405)
T COG0520         147 DGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWL  226 (405)
T ss_pred             CCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccc
Confidence                689999999999999999999999999999999999999999999999999999976 566789999999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhcC---------------------CCCChhhHHHH-HhcCCcHH-HHHHHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEG---------------------SGLAPFDCWIC-LRGVKTMA-LRVEKQQD  259 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~  259 (386)
                      .||.|  +|+++++++.+.+ +.+.....+                     .+......... ..+++.+. .-.+...+
T Consensus       227 ~gP~G--iGvLy~r~~~l~~-l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~  303 (405)
T COG0520         227 LGPTG--IGVLYVRKELLEE-LEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEA  303 (405)
T ss_pred             cCCCc--eEEEEEchHHHhh-cCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHH
Confidence            99988  7999998654433 322211111                     11111111111 11111111 01122233


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~  339 (386)
                      +.+.+.++          ....|.+++++.++.+....++++++|.+++. ....+...|...+|.++.|.++   ..|.
T Consensus       304 ~e~~L~~~----------~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~-~~~dv~~~L~~~gI~vr~g~~c---a~p~  369 (405)
T COG0520         304 HERELTEY----------LLEGLSELPGVEIYGPPDADRGGIVSFNVKGI-HPHDVATLLDEKGIAVRAGHHC---AQPL  369 (405)
T ss_pred             HHHHHHHH----------HHHHHhcCCCeEEecCCcccCceEEEEEeCCC-CHHHHHHHHHhCCeEEEecccc---ccHH
Confidence            33333333          33446666677777654435689999999776 3677788888888999988762   2232


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                       +..          .+. .+.+|+|++..++++.|++|.++|++.
T Consensus       370 -~~~----------~~~-~~~iR~S~~~YNt~edid~l~~aL~~~  402 (405)
T COG0520         370 -HRL----------LGV-DATIRASLHLYNTEEDVDRLLEALKKA  402 (405)
T ss_pred             -HHh----------cCC-CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence             111          122 333999999888888888888887764

>PLN02187 rooty/superroot1

Probab=99.97  E-value=2.8e-29  Score=239.41  Aligned_cols=330  Identities=13%  Similarity=0.121  Sum_probs=205.6

Q ss_pred             ccceeeccCCCCCC-CCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHH
Q 016612            9 VSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMA   81 (386)
Q Consensus         9 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~   81 (386)
                      ....+++++.++.. ++...+|......+.. .+.....+.|.+. |.+ +|+++.+++.+.++.    +++++++++++
T Consensus        64 ~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~-~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~  142 (462)
T PLN02187         64 VNKTILPLGHGDPSVYPCFRTCIEAEDAVVD-VLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQ  142 (462)
T ss_pred             CCCCeEECCCCCCCCCCCCCCCHHHHHHHHH-HHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHH
Confidence            34556677755444 4433333221111111 1112334578776 775 788888888765543    24444444559


Q ss_pred             HHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCc
Q 016612           82 ALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ  153 (386)
Q Consensus        82 al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG  153 (386)
                      ++.. +..+++|||.|++++|+|+.+.    ..++..|.+++.++..       |+++++++++++++++++++|+||||
T Consensus       143 al~~~~~~l~~pGd~Vlv~~P~y~~y~----~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG  218 (462)
T PLN02187        143 GIEIVFESLARPNANILLPRPGFPHYD----ARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCG  218 (462)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCC
Confidence            9975 5557899999999999999885    4556788888887651       78999999988999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC----C-C---CCCccEEEeccccccccCCCceEEEEEEcCh-hH-
Q 016612          154 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P-L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGE-RL-  220 (386)
Q Consensus       154 ~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~----~-~---~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~-~~-  220 (386)
                      .+++   +++|.++|+++|++||+||+|..-.+..    + .   .....++++|+||.| +.+|+|+||+++.++ .+ 
T Consensus       219 ~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f-~~pGlRiG~~v~~~p~~~~  297 (462)
T PLN02187        219 NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGW-VVPGWKIGWIALNDPEGVF  297 (462)
T ss_pred             CccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhc-CCccceeEEEEecCchhHH
Confidence            9986   7889999999999999999987432211    1 1   112478999999998 556899999998543 22 


Q ss_pred             --HHHHHHhhhhcCC--CCChhhHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhh
Q 016612          221 --AKELYFLQNAEGS--GLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  291 (386)
Q Consensus       221 --~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~  291 (386)
                        .+.+.........  ..+...+.++...++     .+....+.+.++.+.+.+.|++.+        .+.       .
T Consensus       298 ~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~--------~~~-------~  362 (462)
T PLN02187        298 ETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIP--------CVV-------C  362 (462)
T ss_pred             HHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCC--------CCc-------C
Confidence              2334333333222  234555555544442     122233444445555555555432        110       0


Q ss_pred             hhccCCCCceEEEEeCCH------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 016612          292 YSQAKGAGSVLSFLTGSL------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  365 (386)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  365 (386)
                      ... +..+.++++.++..      ...+.+.+.+...|+.+.+|..+.                       .+++|||++
T Consensus       363 ~~~-P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg-----------------------~~~~iRis~  418 (462)
T PLN02187        363 PKK-PESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALG-----------------------LKNWMRITI  418 (462)
T ss_pred             CCC-CCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccC-----------------------CCCeEEEEe
Confidence            001 11245566655311      122333444466788888876521                       257899999


Q ss_pred             cc--CChHHHHHHHHHHHhc
Q 016612          366 GI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       366 ~~--~~~~~~i~~l~~~l~~  383 (386)
                      +.  +.+++.+++|.+++++
T Consensus       419 ~~~~e~l~~al~rL~~~l~~  438 (462)
T PLN02187        419 GVEAHMLEDALERLKGFCTR  438 (462)
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            84  6667778888877754

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.97  E-value=5.7e-29  Score=234.63  Aligned_cols=296  Identities=19%  Similarity=0.178  Sum_probs=200.1

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcH-HHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-t~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ....|++. |.+ +|+++.+++++.+|.+    +.|++++| ++++.. +..++++||+|++++|+|+.+.    .+++.
T Consensus        70 ~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~----~~~~~  145 (405)
T PRK06207         70 GVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANR----KLVEF  145 (405)
T ss_pred             CCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHH
Confidence            34578876 776 8999999999987742    34555555 588874 5557899999999999998875    55667


Q ss_pred             CCcEEEEeCCC----------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc
Q 016612          117 TGVVVKRVNTC----------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (386)
Q Consensus       117 ~g~~~~~v~~~----------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~  183 (386)
                      .|.+++.++.+          |++++++.++++++++++++|+||||.+.+   +++|.++|+++|++||+||+|+...+
T Consensus       146 ~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~  225 (405)
T PRK06207        146 FEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLY  225 (405)
T ss_pred             cCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence            78888777642          788999988888999999999999999996   77899999999999999999874321


Q ss_pred             -----cCCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----H
Q 016612          184 -----SRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----M  250 (386)
Q Consensus       184 -----~~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  250 (386)
                           ....    ..+..+++.|+||.+ +.+|+|+||++++ +.+.+.+...........+...+.++...++.    +
T Consensus       226 ~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~lpGlRiG~ii~~-~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~  303 (405)
T PRK06207        226 DGTSYTHLRALPIDPENVITIMGPSKTE-SLSGYRLGVAFGS-PAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWM  303 (405)
T ss_pred             CCCCCCchhcCCCCcCcEEEEecchhhc-cCcccceEEEEcC-HHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHH
Confidence                 1111    124569999999999 5558999999986 55666565554444334444444444444322    2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcC-cceeccCC
Q 016612          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTK-YFSITVSF  328 (386)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~-~~gi~~~~  328 (386)
                      ..+.+...++.+.+.+.+++.+              ++.+.  . +..|.++++.++. ......+.+.+. ..|+.+.+
T Consensus       304 ~~~~~~~~~~r~~l~~~L~~~~--------------~~~~~--~-p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~p  366 (405)
T PRK06207        304 KDRIARHQAIRDDLLRVLRGVE--------------GVFVR--A-PQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTP  366 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC--------------Cceec--C-CCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeC
Confidence            3333334444444444443321              11111  1 1125677777753 223456666664 56888888


Q ss_pred             CCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          329 GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       329 G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      |..+.                     +..++++|||++.  +.+++.+++|.+++++.
T Consensus       367 G~~F~---------------------~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~  403 (405)
T PRK06207        367 GTEFS---------------------PHTADSIRLNFSQDHAAAVAAAERIAQLIERY  403 (405)
T ss_pred             chHhC---------------------CCCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            76521                     0125789999985  66667777777777653

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.97  E-value=9.4e-29  Score=232.31  Aligned_cols=294  Identities=18%  Similarity=0.206  Sum_probs=200.0

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ..|... |.+ +++++++++++.+|.    ++.+++++|+ +++. ++..++++||+|++++|.|..+.    ..++..|
T Consensus        59 ~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g  134 (389)
T PRK05957         59 HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHE----MAITMAG  134 (389)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcC
Confidence            567776 776 899999999998875    3456666665 8886 45567899999999999998875    3446789


Q ss_pred             cEEEEeCCC-----CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----C
Q 016612          119 VVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----R  185 (386)
Q Consensus       119 ~~~~~v~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-----~  185 (386)
                      ++++.++.+     |++++++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+||+|....+.     .
T Consensus       135 ~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~  214 (389)
T PRK05957        135 CQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFS  214 (389)
T ss_pred             CEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccC
Confidence            999888764     789999999889999999999999999997   889999999999999999998632211     1


Q ss_pred             C----CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHHHH
Q 016612          186 P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQ  257 (386)
Q Consensus       186 ~----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  257 (386)
                      .    ......+++.|+||.+ |.+|+|+||++++ +.+.+.+.........+.+...+.++...+..    +....+.+
T Consensus       215 ~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  292 (389)
T PRK05957        215 PGSIPGSGNHTISLYSLSKAY-GFASWRIGYMVIP-IHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEI  292 (389)
T ss_pred             hhhCCCccCcEEEEecchhhc-cCccceeEEEecC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHH
Confidence            1    1223579999999999 6678999999986 45666666555444444454555554444432    22223334


Q ss_pred             HHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC-cceeccCCCCcccccc
Q 016612          258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLIS  336 (386)
Q Consensus       258 ~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~~~~G~~~~~~~  336 (386)
                      .++.+.+.+.|++.+        ++     ..+.  . ...+.++++.++......++.+.+. ..|+.+.+|..+..  
T Consensus       293 ~~~r~~l~~~L~~~~--------~~-----~~~~--~-~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~--  354 (389)
T PRK05957        293 AQVRQILLKSLGQLQ--------DR-----CTLH--P-ANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGM--  354 (389)
T ss_pred             HHHHHHHHHHHHhcC--------CC-----cccc--C-CCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCC--
Confidence            444444555554322        10     0111  1 1124556666654333556666664 46888888775320  


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          337 MPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       337 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                                         ..++++|||++.   +++++.++.|.+.+++
T Consensus       355 -------------------~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~  385 (389)
T PRK05957        355 -------------------KNGCYLRIAYGALQKATAKEGIERLVQGLKT  385 (389)
T ss_pred             -------------------CCCCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence                               024689999974   4456677777776654

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.97  E-value=2.8e-30  Score=228.36  Aligned_cols=251  Identities=22%  Similarity=0.255  Sum_probs=180.3

Q ss_pred             ceeec-cCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHH-HH
Q 016612           11 TLLMN-FSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AA   82 (386)
Q Consensus        11 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt-~a   82 (386)
                      +...+ |||+   +...++|.+.+.+..+ .+.....++|++. |.| +++.|++.+++++|.    ++.|++|.|. ++
T Consensus        30 ~~~~~~LgqG---fp~~~~P~fv~ea~~~-~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~a  105 (420)
T KOG0257|consen   30 HKVPNPLGQG---FPDFPPPKFVTEAAKN-AAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEA  105 (420)
T ss_pred             cCCCCcccCC---CCCCCCcHHHHHHHHH-HhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHH
Confidence            34445 8877   4555566555433332 2222356788887 998 899999999998875    3667777776 99


Q ss_pred             HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------------CHHHHHhhhCCCceEEEEeCC
Q 016612           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------------DLDEVASAIGPWTKLVWVESP  148 (386)
Q Consensus        83 l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------------d~~~l~~~~~~~~~~v~~~~~  148 (386)
                      +. ++++++++||+|++.+|.|.+|.    ...+..|...+.++..             |.++++.+++++|++|++++|
T Consensus       106 i~~~~~~l~~~GDeVii~eP~fd~Y~----~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntP  181 (420)
T KOG0257|consen  106 ISSALLGLLNPGDEVIVFEPFFDCYI----PQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTP  181 (420)
T ss_pred             HHHHHHHHcCCCCEEEEecCcchhhh----hHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCC
Confidence            86 89999999999999999999996    4556777777777643             899999999999999999999


Q ss_pred             CCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---------CCCCCCccEEEeccccccccCCCceEEEEEEc
Q 016612          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (386)
Q Consensus       149 ~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~  216 (386)
                      |||||.+++   |++|+++|++||+++|.|++|..-.+.         .|...+..+.++|++|++ |..|+|.||+++ 
T Consensus       182 hNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf-~~TGWrlGW~ig-  259 (420)
T KOG0257|consen  182 HNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTF-GVTGWRLGWAIG-  259 (420)
T ss_pred             CCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEecccccee-eeeeeeeeeeec-
Confidence            999999986   889999999999999999997532211         244456789999999999 667899999999 


Q ss_pred             ChhHHHHHHHhhhhcCC-CCChhhHHHHHh---cC--------CcHHHHHHHHHHHHHHHHHHHhhC
Q 016612          217 GERLAKELYFLQNAEGS-GLAPFDCWICLR---GV--------KTMALRVEKQQDNAQKIAEFLASH  271 (386)
Q Consensus       217 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~l~~~l~~~  271 (386)
                      ++.+......+...... ..++.+.+.+..   .+        .........+.++.+.+.+.|.+.
T Consensus       260 p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l  326 (420)
T KOG0257|consen  260 PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL  326 (420)
T ss_pred             hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56665555554443332 233333322211   11        111224555666777777777654

>PRK07324 transaminase; Validated

Probab=99.97  E-value=6.6e-29  Score=231.79  Aligned_cols=293  Identities=20%  Similarity=0.192  Sum_probs=191.7

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEE
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~  121 (386)
                      ....|++. |.+ +++++.+++.. ...++.++++++++++. ++.+++++||+|+++.|.|+.+.    .+++..|.++
T Consensus        54 ~~~~Y~~~~G~~~lr~~ia~~~~~-~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~g~~v  128 (373)
T PRK07324         54 KKLTYGWIEGSPEFKEAVASLYQN-VKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLY----DIPESLGAEV  128 (373)
T ss_pred             CCccCCCCCCCHHHHHHHHHHhcC-CChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEE
Confidence            44578876 776 45555544421 12234555555568887 55668899999999999998875    5566788899


Q ss_pred             EEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----CCC
Q 016612          122 KRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL  187 (386)
Q Consensus       122 ~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~~~  187 (386)
                      +.++.+       |++++++.++++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|..-...    +..
T Consensus       129 ~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~  208 (373)
T PRK07324        129 DYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIA  208 (373)
T ss_pred             EEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChh
Confidence            888752       788999888889999999999999999998   889999999999999999998632221    111


Q ss_pred             C-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHH----HHHHHHHH
Q 016612          188 E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV----EKQQDNAQ  262 (386)
Q Consensus       188 ~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  262 (386)
                      . .+..+++.|+||.+ |.+|+|+||++++ +.+.+.+...+.......+...+.++...++......    +...++.+
T Consensus       209 ~~~~~~I~~~s~SK~~-~~~G~RiG~i~~~-~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~  286 (373)
T PRK07324        209 DLYEKGISTNSMSKTY-SLPGIRVGWIAAN-EEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLA  286 (373)
T ss_pred             hccCCEEEEecchhhc-CCccceeEEEecC-HHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            1 24568999999999 5568999999985 6666666666554434445555555555444322222    22333444


Q ss_pred             HHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhc-CcceeccCCCCccccccccccc
Q 016612          263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       263 ~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      .+.+++++.+              +....  .+. .+.++++.++......++.+++ ...|+.+.+|..+.        
T Consensus       287 ~l~~~l~~~~--------------~~~~~--~p~-gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~--------  341 (373)
T PRK07324        287 ILDEWVAKEP--------------RVSYV--KPK-AVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFD--------  341 (373)
T ss_pred             HHHHHHhcCC--------------CceEE--CCC-ceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccC--------
Confidence            4444444322              11111  111 1333444444322344555554 45677777776521        


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          342 SHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                                     .++++|||++.  +..++.+++|.++++++
T Consensus       342 ---------------~~~~iRis~~~~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        342 ---------------LEGHVRIGYCCDTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             ---------------CCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence                           14679999974  66777788888887764

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.3e-28  Score=231.86  Aligned_cols=322  Identities=15%  Similarity=0.136  Sum_probs=208.6

Q ss_pred             cceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCc-hHHHHHHHHHhhcCCC-----ceEEeCcHH-HH
Q 016612           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDKAD-----RALCFTSGM-AA   82 (386)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g~~-----~~i~~~~gt-~a   82 (386)
                      ....++++.+...++.  ++.... .+.. .+.......|...|.+ +++++.+++.+.+|.+     +.|++++|+ ++
T Consensus        43 ~~~~i~L~~g~p~~~~--~~~~~~-~l~~-~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a  118 (410)
T PRK06290         43 DMELIDMGVGEPDEMA--DESVVE-VLCE-EAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA  118 (410)
T ss_pred             CCCeEEcCCCCCCCCC--CHHHHH-HHHH-HHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence            3456778866555552  222211 1111 1111223457655776 7888888888766532     357777776 88


Q ss_pred             HHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCcc
Q 016612           83 LAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQ  154 (386)
Q Consensus        83 l~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~  154 (386)
                      +.. +..++++||.|++++|.|+.+.    ..++..|.+++.++.+       |++++++.+.+++++|++++|+||||.
T Consensus       119 l~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~  194 (410)
T PRK06290        119 LAMLPSCFINPGDVTLMTVPGYPVTG----THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGA  194 (410)
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCc
Confidence            874 4567899999999999999885    5566789999888763       678888888888999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHH
Q 016612          155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (386)
Q Consensus       155 ~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~  223 (386)
                      +++   +++|.++|+++|++||+||+|....+.    ...    ..+.++++.|+||.+ |.+|+|+||++++ +.+.+.
T Consensus       195 v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~-g~~GlRiG~ii~~-~~l~~~  272 (410)
T PRK06290        195 VATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAY-NMTGWRLAFVVGN-ELIVKA  272 (410)
T ss_pred             CCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhc-CCchhheEeEEeC-HHHHHH
Confidence            997   678888999999999999998743221    111    124579999999999 5578999999986 556555


Q ss_pred             HHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc
Q 016612          224 LYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  300 (386)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~  300 (386)
                      +.........+.+...+.++...++.   .....+.+.++.+.+.+.|++..         +.      ++    ...++
T Consensus       273 l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~------~~----~p~g~  333 (410)
T PRK06290        273 FATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEVG---------FK------AE----MPGGT  333 (410)
T ss_pred             HHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhCC---------Ce------ec----CCCee
Confidence            55554443344444444444444432   22334444555555666665431         11      11    11334


Q ss_pred             eE-EEEeCCH-------HhHHHHHhhcCcce-eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-----
Q 016612          301 VL-SFLTGSL-------ALSKHVVETTKYFS-ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----  366 (386)
Q Consensus       301 ~~-~~~~~~~-------~~~~~l~~~l~~~g-i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----  366 (386)
                      ++ ++.+++.       ....++.+.+...+ +...+|..                         ..+++||+++     
T Consensus       334 f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~-------------------------~~~~lRi~~~~~~~~  388 (410)
T PRK06290        334 FYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDD-------------------------AGHFLRFSVTFEAKD  388 (410)
T ss_pred             eEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcc-------------------------ccCeEEEEEEccccc
Confidence            44 4566432       13455666665543 33333321                         1357999995     


Q ss_pred             cCChHHHHHHHHHHHhcCC
Q 016612          367 IEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       367 ~~~~~~~i~~l~~~l~~~~  385 (386)
                      .++++++++.|.+.|..+.
T Consensus       389 ~~~~~~~~~~l~~~~~~~~  407 (410)
T PRK06290        389 EEEEDRILEEIKRRLSDVE  407 (410)
T ss_pred             ccchhHHHHHHHHHHhhcc
Confidence            5999999999999997653

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.97  E-value=4.6e-28  Score=228.52  Aligned_cols=288  Identities=14%  Similarity=0.145  Sum_probs=193.3

Q ss_pred             ccccCCCCc-hHHHHHHHHHhhcCC----CceEEeCcHH-HHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           47 YDYTRSGNP-TRDALESLLAKLDKA----DRALCFTSGM-AALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        47 ~~y~~~g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt-~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      +.|...|.+ +++++.+++.+.+|.    ++.|++++|+ +++.. +.+++++||.|++++|+|+.+.    ..++..|+
T Consensus        64 ~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~G~  139 (399)
T PRK07681         64 YGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYE----TGIQMAGA  139 (399)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchH----HHHHhcCC
Confidence            445544775 788888888876553    2456666665 88874 5567899999999999999885    55668899


Q ss_pred             EEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----
Q 016612          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----  184 (386)
Q Consensus       120 ~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-----  184 (386)
                      +++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|.++|+++|++||+||+|+...+.     
T Consensus       140 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~  219 (399)
T PRK07681        140 TSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPI  219 (399)
T ss_pred             EEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCC
Confidence            99888753       678888888788999999999999999997   788999999999999999998732211     


Q ss_pred             CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHHH
Q 016612          185 RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEK  256 (386)
Q Consensus       185 ~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  256 (386)
                      ...    ..+.++++.|+||.+ |.+|+|+||++++ +.+.+.+...........+...+.++...+..    +....+.
T Consensus       220 ~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~i~~-~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~  297 (399)
T PRK07681        220 SFLSVPGAKEVGVEINSLSKSY-SLAGSRIGYMIGN-EEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGI  297 (399)
T ss_pred             ChhhCCCCcccEEEEeeccccc-CCccceeEEEecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            111    124579999999999 5668999999986 55666665555444445555555555544432    2222333


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc-ceeccCCCCccccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLI  335 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~~~~G~~~~~~  335 (386)
                      +.++.+.+.+.|++..         +      .+.  . +..+.++++.+++.....++.+.+.. .|+.+.+|..+.  
T Consensus       298 ~~~~~~~l~~~L~~~g---------~------~~~--~-p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~--  357 (399)
T PRK07681        298 YQERRDTLVDGFRTFG---------W------NVD--K-PAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFG--  357 (399)
T ss_pred             HHHHHHHHHHHHHHCC---------C------ccc--C-CCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhC--
Confidence            4444455555555421         1      110  1 12356677777543334556666544 688777775421  


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHH
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDK  379 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~  379 (386)
                                         ...++++|||++.  +++++.+++|++
T Consensus       358 -------------------~~~~~~iRis~~~~~~~~~~~l~~l~~  384 (399)
T PRK07681        358 -------------------PHGEGFVRIALVQDEEVLQQAVENIRN  384 (399)
T ss_pred             -------------------cCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence                               0125789999974  455555555554

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.97  E-value=3.9e-28  Score=228.22  Aligned_cols=293  Identities=22%  Similarity=0.260  Sum_probs=192.2

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcC--C--CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDK--A--DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g--~--~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|... |.+ +++++.+++++.+|  .  ++.++++++++++.. +..++++||.|++++|.|+.+.    ..++..|
T Consensus        54 ~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g  129 (382)
T PRK06108         54 ETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLV----AAPKILG  129 (382)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchH----HHHHHCC
Confidence            3458876 876 89999999988877  3  245555556688874 4557899999999999998875    4556788


Q ss_pred             cEEEEeCCC--------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          119 VVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       119 ~~~~~v~~~--------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      ++++.++.+        |++++++.++++++++++++|+||||.+.+   +++|.++|+++|+++|+||+|+...+.   
T Consensus       130 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~  209 (382)
T PRK06108        130 ARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGG  209 (382)
T ss_pred             CEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCC
Confidence            998888753        678999988888999999999999999985   788999999999999999998643321   


Q ss_pred             ---C---CCC-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHH
Q 016612          185 ---R---PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALR  253 (386)
Q Consensus       185 ---~---~~~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  253 (386)
                         .   ... .+.++++.|+||.+ |.+|+|+||+++++ ++.+.+.........+.+...+.++...+..    +...
T Consensus       210 ~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~  287 (382)
T PRK06108        210 RAPSFLDIAEPDDRIIFVNSFSKNW-AMTGWRLGWLVAPP-ALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAEL  287 (382)
T ss_pred             CCCCHhhcCCCcCCEEEEeechhhc-cCcccceeeeeCCH-HHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHH
Confidence               0   111 24579999999998 55689999999874 4555554444333344555555444444332    1222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhc-CcceeccCCCCcc
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVK  332 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~gi~~~~G~~~  332 (386)
                      .++..++.+.+.+.|++.              +++.+.  .+. .+.++++.+++......+.+.+ ...|+.+.+|..+
T Consensus       288 ~~~~~~~~~~l~~~L~~~--------------~~~~~~--~p~-~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f  350 (382)
T PRK06108        288 VARLRRSRDHLVDALRAL--------------PGVEVA--KPD-GAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAF  350 (382)
T ss_pred             HHHHHHHHHHHHHHHHhC--------------CCCccc--CCC-eeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhh
Confidence            233333333444444332              122221  111 1344566675433345565554 4567877776642


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                      .                     ...++++|+|++.  +++++.++.|+++++
T Consensus       351 ~---------------------~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        351 G---------------------PGGEGFLRWCFARDPARLDEAVERLRRFLA  381 (382)
T ss_pred             C---------------------CCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            1                     0125789999987  445555666666554

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.97  E-value=4.8e-28  Score=228.62  Aligned_cols=328  Identities=15%  Similarity=0.098  Sum_probs=202.0

Q ss_pred             cceeeccCCC-CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC--C-ceEEeCcH-HHH
Q 016612           10 STLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSG-MAA   82 (386)
Q Consensus        10 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g-t~a   82 (386)
                      ...+++++.+ ++.|+...+|.....+... .+.......|++. |.+ +|+++.+++.+.+|.  + +.|++++| +++
T Consensus        31 ~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~-~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~a  109 (409)
T PLN00143         31 HRLAISFGFGDPSCFECFRTTNIAEDAIVE-AVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHA  109 (409)
T ss_pred             CCceeeCCCCCCCCCCCCCCCHHHHHHHHH-HHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHH
Confidence            3456666644 3334444444322111111 1112334568776 876 788898888876543  2 44555555 588


Q ss_pred             HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCcc
Q 016612           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQ  154 (386)
Q Consensus        83 l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~  154 (386)
                      +. ++.+++++||.|++++|+|+.+.    ..++..|.+++.++..       |+++++++++++++++++++||||||.
T Consensus       110 l~~~~~~l~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~  185 (409)
T PLN00143        110 AEIIIKVLARPEANILLPRPGFPDVE----TYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGS  185 (409)
T ss_pred             HHHHHHHHcCCCCEEEEcCCCCcCHH----HHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCC
Confidence            87 45567899999999999999885    4556778888887642       789999988888999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----CC----CCCCccEEEeccccccccCCCceEEEEEEc-ChhHHH
Q 016612          155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAK  222 (386)
Q Consensus       155 ~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~~----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~-~~~~~~  222 (386)
                      +++   +++|.++|++++++||+||+|..-.+.    .+    ......+++.|+||.| +.+|+|+||++++ ++.+.+
T Consensus       186 ~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~~p~~~~~  264 (409)
T PLN00143        186 VYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRW-MIPGWGLGWLVTCDPSGLLQ  264 (409)
T ss_pred             ccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhc-CCCccceEEEEeeCchhhhh
Confidence            987   778899999999999999998642221    11    1123579999999998 4568999999984 333322


Q ss_pred             ------HHHHhhhhcCCCCChhhHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhh
Q 016612          223 ------ELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  291 (386)
Q Consensus       223 ------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~  291 (386)
                            .+...... ....+...+.++...+.     .+....+...++.+.+.+.+++.+              +.. .
T Consensus       265 ~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~--------------~~~-~  328 (409)
T PLN00143        265 ICEIADSIKKALNP-APFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIP--------------CIM-C  328 (409)
T ss_pred             hHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CCC-C
Confidence                  12222211 11223344444443332     122223333334443444443321              100 0


Q ss_pred             hhccCCCCceEEEEeCCH-----HhHHHHH-hhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 016612          292 YSQAKGAGSVLSFLTGSL-----ALSKHVV-ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  365 (386)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~-----~~~~~l~-~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  365 (386)
                      ...+ ..+.++|+.++..     ....+++ +.+...|+.+.+|..+.                       .++++||++
T Consensus       329 ~~~p-~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-----------------------~~~~iRi~~  384 (409)
T PLN00143        329 PQKA-EGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVG-----------------------LKNWLRITF  384 (409)
T ss_pred             CCCC-CeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccC-----------------------CCCeEEEEE
Confidence            0111 1356777777421     1233333 44466788888876521                       256899999


Q ss_pred             cc--CChHHHHHHHHHHHhc
Q 016612          366 GI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       366 ~~--~~~~~~i~~l~~~l~~  383 (386)
                      +.  +.+++.+++|++++++
T Consensus       385 ~~~~~~l~~al~rl~~~l~~  404 (409)
T PLN00143        385 AVEQSSLEDGLGRLKSFCGR  404 (409)
T ss_pred             cCCHHHHHHHHHHHHHHHHH
Confidence            84  6677778888877754

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.97  E-value=2e-28  Score=230.62  Aligned_cols=289  Identities=15%  Similarity=0.118  Sum_probs=189.1

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +++++.+++.+.+|.    ++.+++++| ++++. ++.+++++||+|++++|+|+.+..    .+...
T Consensus        66 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~----~~~~~  141 (394)
T PRK05942         66 NHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFR----GPLIA  141 (394)
T ss_pred             CccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH----HHHHc
Confidence            4678876 876 899999998877663    234655555 58887 455688999999999999998853    34567


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      |.+++.++.+       |++++++.+.++++++++++|+||||.+.+   +++|.++|+++|+++|+||+|....+.   
T Consensus       142 g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~  221 (394)
T PRK05942        142 GAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQ  221 (394)
T ss_pred             CCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCC
Confidence            8888887652       688998888889999999999999999997   788999999999999999998632211   


Q ss_pred             --C---CCC-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH----HH
Q 016612          185 --R---PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL----RV  254 (386)
Q Consensus       185 --~---~~~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  254 (386)
                        .   ... .+.++++.|+||.+ |.+|+|+||++++ +++.+.+.........+.+...+.++...++....    ..
T Consensus       222 ~~~~~~~~~~~~~~i~~~SfSK~~-~~~GlRiG~i~~~-~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  299 (394)
T PRK05942        222 PTSLLEIPGAKDIGVEFHTLSKTY-NMAGWRVGFVVGN-RHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQ  299 (394)
T ss_pred             CCChhhCCCccccEEEEecchhcc-CChhhheeeeecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHH
Confidence              1   111 23468899999998 5578999999986 55666666555433334454555544444432221    22


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCCHHhHHHHHh-hcCcceeccCCCCcc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVE-TTKYFSITVSFGSVK  332 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~l~~~gi~~~~G~~~  332 (386)
                      +.+.++.+.+.+.+++..         +      .+.    ...++ ++++.++......++.. .+...|+.+.+|..+
T Consensus       300 ~~~~~~~~~~~~~L~~~~---------~------~~~----~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f  360 (394)
T PRK05942        300 ERYRTRRDFLIQGLGELG---------W------NIP----PTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAF  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHCC---------C------eec----CCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhh
Confidence            223333333444443321         1      111    12344 66777754222333333 344567777666542


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                      .                     ...++++||+++ .+.+.+.+.+++..
T Consensus       361 ~---------------------~~~~~~iRis~~-~~~~~l~~~l~~l~  387 (394)
T PRK05942        361 G---------------------EGGEGYVRISLI-ADCDRLGEALDRLK  387 (394)
T ss_pred             C---------------------cCCCCeEEEEec-CCHHHHHHHHHHHH
Confidence            1                     012578999998 45667766665543

>PLN00175 aminotransferase family protein; Provisional

Probab=99.97  E-value=4.2e-28  Score=228.99  Aligned_cols=296  Identities=17%  Similarity=0.191  Sum_probs=199.6

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      +...|++. |.+ +++++.+++.+.+|.+    +.|++++| ++++. ++.++++|||+|++++|.|+.+.    ..++.
T Consensus        83 ~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~  158 (413)
T PLN00175         83 GKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE----ATLSM  158 (413)
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHH
Confidence            34678887 887 8999999988876642    24555555 58887 55668899999999999998885    45567


Q ss_pred             CCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          117 TGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       117 ~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      .|.+++.++.+      |++++++.+.+++++|++++|+||||.+++   +++|.++|++++++||+||+|....+.   
T Consensus       159 ~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~  238 (413)
T PLN00175        159 AGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDH  238 (413)
T ss_pred             cCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcc
Confidence            88888888753      688999999889999999999999999985   778999999999999999998643221   


Q ss_pred             -CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHH
Q 016612          185 -RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVE  255 (386)
Q Consensus       185 -~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  255 (386)
                       ...    ..+..+++.|+||.+ +.+|+|+||+++++ .+.+.+...........+...+.++...+..    +....+
T Consensus       239 ~s~~~~~~~~~~vi~i~SfSK~~-~~~G~RiG~~v~~~-~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~  316 (413)
T PLN00175        239 ISMASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPP-HLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKR  316 (413)
T ss_pred             cChhhCCCCcCcEEEEecchhhc-cCcchheeeeEeCH-HHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHH
Confidence             111    125679999999999 55689999999874 4655555555444455566666666555532    233344


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--CHHhHHHHHhhc-CcceeccCCCCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHVVETT-KYFSITVSFGSVK  332 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l-~~~gi~~~~G~~~  332 (386)
                      .+.++.+.+.+.|++..         +      .+.  .+. .+.++++.+.  +.....++.+.+ ...|+.+.+|..+
T Consensus       317 ~~~~~~~~l~~~L~~~g---------~------~~~--~p~-g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F  378 (413)
T PLN00175        317 DYSAKKDILVEGLKEVG---------F------KVY--PSS-GTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVF  378 (413)
T ss_pred             HHHHHHHHHHHHHHHCC---------C------eec--CCC-eeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHh
Confidence            45555555656655431         1      111  111 2344566553  211244555555 3457777776542


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                      ..-  +                +..+++|||+++.  +++++.+++|.+.++
T Consensus       379 ~~~--~----------------~~~~~~iRls~~~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        379 YLN--P----------------EDGKNLVRFAFCKDEETLRAAVERMKTKLK  412 (413)
T ss_pred             CCC--C----------------CCCCCEEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            100  0                0125689999974  666777777777665

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.97  E-value=6.5e-28  Score=228.57  Aligned_cols=201  Identities=17%  Similarity=0.179  Sum_probs=144.4

Q ss_pred             cceeeccCCCCCC-CCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHH
Q 016612           10 STLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAA   82 (386)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~a   82 (386)
                      ...+++++.++.. ++...+|........ ..+.......|++. |.+ +|+++.+++.+.+|.    ++++++++++++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~-~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~a  129 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVA-AALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQA  129 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHH-HHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHH
Confidence            3457788866443 454444422111111 11222234578876 776 788888888765543    356666666799


Q ss_pred             HHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCcc
Q 016612           83 LAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (386)
Q Consensus        83 l~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~  154 (386)
                      +..+ ..++++||+|++++|.|+.+.    ..+...|.+++.++.       .|++++++.++++++++++++|+||||.
T Consensus       130 l~l~~~~l~~~Gd~Vlv~~P~y~~y~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~  205 (430)
T PLN00145        130 IEIIMSVLAQPGANILLPRPGYPLYE----ARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGS  205 (430)
T ss_pred             HHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCC
Confidence            9754 557799999999999999885    345567788887764       2889999999999999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC----C----CCCCccEEEeccccccccCCCceEEEEEEc
Q 016612          155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P----LELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (386)
Q Consensus       155 ~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~----~----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~  216 (386)
                      +++   +++|.++|+++|++||+||+|....+..    +    ......+++.|+||.+ +.+|+|+||+++.
T Consensus       206 v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pG~RlG~iv~~  277 (430)
T PLN00145        206 VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRW-VVPGWRLGWIATC  277 (430)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEecccccc-CCCCeeEEEEEEe
Confidence            997   7889999999999999999986432210    1    1124679999999998 4568999999984

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.97  E-value=3.2e-28  Score=228.62  Aligned_cols=286  Identities=16%  Similarity=0.126  Sum_probs=190.9

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHH-HHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt-~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|++. |.+ +|+++.+++.+.+|.    ++.+++++|+ +++.. +..++++||.|++++|+|+.+.    ..++..
T Consensus        60 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~  135 (383)
T TIGR03540        60 NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYR----IGTLFA  135 (383)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchH----HHHHhc
Confidence            4568877 775 899999998877665    2356666664 88875 4557899999999999999885    456678


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc----
Q 016612          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL----  183 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~----  183 (386)
                      |.+++.++.+       |++++++.+.++++++++++|+||||.+.+   +++|+++|+++|++||+||+|....+    
T Consensus       136 G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~  215 (383)
T TIGR03540       136 GGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYK  215 (383)
T ss_pred             CCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCC
Confidence            8888888753       678888888889999999999999999997   78899999999999999999863221    


Q ss_pred             -cCC--C--CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHH
Q 016612          184 -SRP--L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRV  254 (386)
Q Consensus       184 -~~~--~--~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  254 (386)
                       ...  .  ..+.++++.|+||.+ |.+|+|+||++++ +++.+.+.........+.+...+.++...+..    +....
T Consensus       216 ~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  293 (383)
T TIGR03540       216 APSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGN-ADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIR  293 (383)
T ss_pred             CcCcccCCCcccCEEEEEeccccc-CCccceeeEEeCC-HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHH
Confidence             111  1  123568899999999 5678999999986 55655555544433334444444444443332    22223


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhc-CcceeccCCCCccc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKS  333 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~gi~~~~G~~~~  333 (386)
                      ..+.++.+.+.+.|++..               ..++  .+. .+.++++.+++......+.+.+ ...|+.+.+|..+.
T Consensus       294 ~~~~~~~~~~~~~L~~~~---------------~~~~--~~~-~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~  355 (383)
T TIGR03540       294 KIYQRRRDLLLEALKKIG---------------IDVE--KPK-ATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFG  355 (383)
T ss_pred             HHHHHHHHHHHHHHHhCC---------------CEec--CCC-cceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhC
Confidence            344455555555555431               1111  111 2455677775433355666664 45688877776532


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  377 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  377 (386)
                      .                     ..++++|||++. +.+++.+.+
T Consensus       356 ~---------------------~~~~~~Ris~~~-~~~~l~~~l  377 (383)
T TIGR03540       356 E---------------------YGEGYIRISLTV-PDERLEEAV  377 (383)
T ss_pred             c---------------------cCCCeEEEEecC-CHHHHHHHH
Confidence            0                     125689999984 334444443

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.97  E-value=3.9e-29  Score=237.58  Aligned_cols=303  Identities=19%  Similarity=0.205  Sum_probs=206.2

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcHH-HHHHHHHH-hcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~~~~~-~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ..+|... |.+ +|+++.+++....|..   +.|++|+|+ +|+.++.. +++|||.|++++|+|.+..    .+++..|
T Consensus       125 ~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~----~~~~~~g  200 (459)
T COG1167         125 ALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL----QALEALG  200 (459)
T ss_pred             hhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH----HHHHHcC
Confidence            5678885 876 8999999998555543   467777776 88986544 7889999999999998875    6677899


Q ss_pred             cEEEEeCCC----CHHHHHhhhCC-CceEEEEe-CCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----
Q 016612          119 VVVKRVNTC----DLDEVASAIGP-WTKLVWVE-SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----  184 (386)
Q Consensus       119 ~~~~~v~~~----d~~~l~~~~~~-~~~~v~~~-~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-----  184 (386)
                      ++++.++++    |+++|++.+.. ++|+++++ +.+||||..++   .++|.++|++||++||+||.|+.-.+.     
T Consensus       201 ~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~  280 (459)
T COG1167         201 ARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPP  280 (459)
T ss_pred             CcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCC
Confidence            999999986    89999999874 78888886 88999999987   578999999999999999998732211     


Q ss_pred             ---CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHH
Q 016612          185 ---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA  261 (386)
Q Consensus       185 ---~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (386)
                         .....+.+++++||||.++  +|+|+||++++ +.+.+.+...........+...+.++..-+.     .....++.
T Consensus       281 ~l~~ld~~~rViy~gSFSK~l~--PglRlG~vv~p-~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~-----~G~~~~hl  352 (459)
T COG1167         281 PLKALDAPGRVIYLGSFSKTLA--PGLRLGYVVAP-PELIEKLLRLKQAADLGPSSLSQAALAAFLL-----SGHYDRHL  352 (459)
T ss_pred             ChHhhCCCCCEEEEeeehhhcc--cccceeeeeCC-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-----cCCHHHHH
Confidence               1122478899999999994  37999999997 4566666666666666666666544433211     01123333


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCC-CCcccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF-GSVKSLISMPCF  340 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~-G~~~~~~~~p~~  340 (386)
                      +++++.+++++   ..+...|..+.+..+.+..+. .|.++|+.++.......+.+.+...|+.+.+ |..+..-     
T Consensus       353 ~~lR~~y~~rr---~~l~~~L~~~~~~~~~~~~p~-gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~-----  423 (459)
T COG1167         353 RRLRREYARRR---DALLEALAEYLPELATWTRPE-GGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSAD-----  423 (459)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHhCCCCeeeecCC-ceEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCC-----
Confidence            33333333322   111122222211111112222 2677888887776688888888888888766 6553211     


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                                    +...+++|+|++.   +++++.++.|.++++.
T Consensus       424 --------------~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~  455 (459)
T COG1167         424 --------------GDPRNGLRLSFSSPSEEEIEEGIKRLAALLRE  455 (459)
T ss_pred             --------------CCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence                          1124579999986   5555556666666654

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.96  E-value=5.3e-28  Score=227.46  Aligned_cols=288  Identities=14%  Similarity=0.091  Sum_probs=184.7

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC--C-c-eEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +|+++.+++.+.+|.  + + .|++++|+ +++..+ ..++++||.|++++|+|+.+.    ..++..
T Consensus        61 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~  136 (388)
T PRK07366         61 THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHA----GGVYLA  136 (388)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHhc
Confidence            4567776 776 888888888876663  2 3 57777665 888754 557899999999999999885    556678


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc----
Q 016612          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL----  183 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~----  183 (386)
                      |.+++.++.+       |++++++.+.++++++++++||||||.+++   +++|.++|+++|++||+||+|..-.+    
T Consensus       137 g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~  216 (388)
T PRK07366        137 GGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV  216 (388)
T ss_pred             CCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC
Confidence            9998888763       566777777778999999999999999986   67788899999999999999863221    


Q ss_pred             --cCCCC----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCC-ChhhHHHHHhcCC----cHHH
Q 016612          184 --SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL-APFDCWICLRGVK----TMAL  252 (386)
Q Consensus       184 --~~~~~----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~  252 (386)
                        .....    ....++++||||.+ |.+|+|+||++++ +++.+.+.........+. +.....+ ...+.    .+..
T Consensus       217 ~~~~~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~-~~li~~l~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~l~~  293 (388)
T PRK07366        217 EPPSILQADPEKSVSIEFFTLSKSY-NMGGFRIGFAIGN-AQLIQALRQVKAVVDFNQYRGILNGA-IAALTGPQATVQQ  293 (388)
T ss_pred             CCCChhhCCCCcccEEEEeeccccc-CCcchhheehcCC-HHHHHHHHHHHhhcccCCCHHHHHHH-HHHHhCcHHHHHH
Confidence              11111    12458899999999 5568999999986 556665655544333322 2222222 22221    1222


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhhc-CcceeccCCC
Q 016612          253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETT-KYFSITVSFG  329 (386)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l-~~~gi~~~~G  329 (386)
                      ..+.+.++.+.+.+.+++..         +.      +  .. +..|.++++.+++.  ....++.+.+ ...|+.+.+|
T Consensus       294 ~~~~~~~~r~~l~~~L~~~~---------~~------~--~~-p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg  355 (388)
T PRK07366        294 TVQIFRQRRDAFINALHQIG---------WP------V--PL-PEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPG  355 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHCC---------Cc------c--cC-CCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCc
Confidence            23333444444444444321         11      0  01 22366777777542  1234455444 5568877777


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHH
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDK  379 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~  379 (386)
                      ..+.                     +..++++||+++.  +.+++.+++|.+
T Consensus       356 ~~f~---------------------~~~~~~iRi~~~~~~~~l~~~l~rl~~  386 (388)
T PRK07366        356 SGFG---------------------KSGEGYVRFALVHDPDILEEAVERIAA  386 (388)
T ss_pred             hHhC---------------------cCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence            6421                     0125789999974  344444554443

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.96  E-value=1.8e-27  Score=220.70  Aligned_cols=262  Identities=20%  Similarity=0.185  Sum_probs=180.2

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC--C-c-eEEeCcHH-HHHH-HHHHhcCCC---CEEEecCCCCCcHHHHHhhhc
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSGM-AALA-AVTHLLGTG---EEIVAGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~gt-~al~-~~~~~~~~g---~~Vlv~~~~~~~~~~~~~~~~  114 (386)
                      ...|... |.+ +++++.+++.+.+|.  + + .|++++|+ +++. ++..++++|   |.|+++.|+|+.+.    ..+
T Consensus        29 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~----~~~  104 (350)
T TIGR03537        29 VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYE----RGA  104 (350)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchH----HHH
Confidence            4458776 775 899999999887663  2 3 67777776 8887 455578877   69999999999986    556


Q ss_pred             ccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc
Q 016612          115 PKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS  184 (386)
Q Consensus       115 ~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~  184 (386)
                      +..|.+++.++.+       |++++++++.++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|+.....
T Consensus       105 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~  184 (350)
T TIGR03537       105 LFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFG  184 (350)
T ss_pred             HhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccC
Confidence            7889999988763       788999888889999999999999999997   889999999999999999998643221


Q ss_pred             C----CC--CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC---cHHHHHH
Q 016612          185 R----PL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVE  255 (386)
Q Consensus       185 ~----~~--~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  255 (386)
                      .    ..  ..+.++++.|+||.+ |.+|+|+||++++ +.+.+.+.......+...+...+.++...+.   ....+..
T Consensus       185 ~~~~~~~~~~~~~~i~~~s~SK~~-g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~  262 (350)
T TIGR03537       185 EPPHSALEVGIENVLAFHSLSKRS-GMTGYRSGFVAGD-EKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRK  262 (350)
T ss_pred             CCCCchhhcCcCCEEEEeeccccc-CCccccceeeecC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHH
Confidence            1    11  234579999999998 4568999999875 5566656555444444444334443333332   1223334


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSV  331 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~  331 (386)
                      .+.++.+.+.+.+++..         +      .+.  . ...+.++++.+++......+.+.+...|+.+.+|..
T Consensus       263 ~l~~~~~~~~~~l~~~g---------~------~~~--~-~~g~~~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~  320 (350)
T TIGR03537       263 IFKRKRDLFIEFFNKVG---------L------EYL--Y-PDATFYLWVKVPSGIDAKDYALRLLENGIVVAPGEN  320 (350)
T ss_pred             HHHHHHHHHHHHHHHCC---------C------ccc--C-CCeEEEEEEECCCCCCHHHHHHHHHHCCEEEcCchh
Confidence            44445555555554321         1      111  1 112445677776543456777777778888887765

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PLN02656 tyrosine transaminase

Probab=99.96  E-value=1.5e-27  Score=225.41  Aligned_cols=329  Identities=13%  Similarity=0.126  Sum_probs=203.2

Q ss_pred             ccceeeccCCCCCC-CCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHH
Q 016612            9 VSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMA   81 (386)
Q Consensus         9 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~   81 (386)
                      ....+++++.++.. .+..++|.....++. ..+.......|++. |.+ +++++.+++.+.+|.    +++++++++++
T Consensus        29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~  107 (409)
T PLN02656         29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVV-DALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQ  107 (409)
T ss_pred             cCCeeeecCCCCCCcCCCCCCCHHHHHHHH-HHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHH
Confidence            34567788855433 222332221111111 11122344678876 776 788888888776553    24555555569


Q ss_pred             HHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCc
Q 016612           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ  153 (386)
Q Consensus        82 al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG  153 (386)
                      ++. ++.+++++||+|++++|.|+.+.    ..++..|++++.++..       |++++++.++++++++++++|+||||
T Consensus       108 al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG  183 (409)
T PLN02656        108 AIDVALSMLARPGANILLPRPGFPIYE----LCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCG  183 (409)
T ss_pred             HHHHHHHHHhCCCCeEEEeCCCCCcHH----HHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCC
Confidence            987 45567899999999999998774    3445678888887752       78899988888899999999999999


Q ss_pred             ccc---cHHHHHHHHHHcCCEEEEeCCCCCCCccC----C----CCCCccEEEeccccccccCCCceEEEEEEcC-----
Q 016612          154 QIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSR----P----LELGADIVMHSATKFIAGHSDVMAGVLAVKG-----  217 (386)
Q Consensus       154 ~~~---~l~~i~~la~~~~~~li~D~a~~~~~~~~----~----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~-----  217 (386)
                      .++   ++++|+++|+++|++||+|++|....+..    +    ......+++.||||.| +.+|+|+||+++++     
T Consensus       184 ~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRiG~~i~~~~~~~~  262 (409)
T PLN02656        184 NVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRW-IVPGWRLGWFVTTDPSGSF  262 (409)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhc-cCcceeEEEEEEeCccccc
Confidence            997   48889999999999999999987332211    1    1224579999999998 45689999999853     


Q ss_pred             --hhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhh
Q 016612          218 --ERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  290 (386)
Q Consensus       218 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i  290 (386)
                        +.+.+.+....... .+.+...+.++...++.     +....+.+.++.+.+.+.|++.+              +...
T Consensus       263 ~~~~~~~~~~~~~~~~-~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~--------------~~~~  327 (409)
T PLN02656        263 RDPKIVERIKKYFDIL-GGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIP--------------CITC  327 (409)
T ss_pred             ccHHHHHHHHHHHhhh-cCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCC--------------CCcC
Confidence              34555554443322 23455555555444431     22223333344444444444321              1100


Q ss_pred             hhhccCCCCceEEEEeCCH------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEE
Q 016612          291 HYSQAKGAGSVLSFLTGSL------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  364 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  364 (386)
                      . ..+. .|.++++.++..      ...+.+.+.+...|+.+.+|..+.                       .++++||+
T Consensus       328 ~-~~p~-gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg-----------------------~~~~iRi~  382 (409)
T PLN02656        328 P-HKPE-GSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVG-----------------------LKNWLRIT  382 (409)
T ss_pred             C-cCCC-eEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcC-----------------------CCCeEEEE
Confidence            0 0111 245556665321      112334455566788877776521                       24679999


Q ss_pred             ecc--CChHHHHHHHHHHHhc
Q 016612          365 VGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       365 ~~~--~~~~~~i~~l~~~l~~  383 (386)
                      ++.  +.+++.+++|++++.+
T Consensus       383 ~~~~~e~l~eal~rl~~~~~~  403 (409)
T PLN02656        383 FAADPSSLEEALGRIKSFYLR  403 (409)
T ss_pred             eCCCHHHHHHHHHHHHHHHHH
Confidence            985  5555666666666653

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.96  E-value=7.8e-28  Score=226.46  Aligned_cols=293  Identities=18%  Similarity=0.199  Sum_probs=193.2

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|.+. |.+ +++++.+++.+.+|.    ++.++++++++++. ++..++++||.|++++|+|.++.    ..++..|
T Consensus        63 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~----~~~~~~g  138 (391)
T PRK08361         63 WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYV----EDAKIAE  138 (391)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccH----HHHHHcC
Confidence            4457665 776 788888887766553    24555555668887 45567899999999999999885    4555678


Q ss_pred             cEEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       119 ~~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+++.++.       .|++++++.++++++++++++|+||||.+.+   +++|.++|+++++++|+||+|+...+.    
T Consensus       139 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~  218 (391)
T PRK08361        139 AKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKH  218 (391)
T ss_pred             CEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCC
Confidence            88888765       3789999999889999999999999999998   888999999999999999998643221    


Q ss_pred             -CC--CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc------HHHHHH
Q 016612          185 -RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVE  255 (386)
Q Consensus       185 -~~--~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  255 (386)
                       ..  ...+.++++.|+||.+ |.+|+|+||+++++ ++.+.+.........+.+...+.++...+..      +....+
T Consensus       219 ~~~~~~~~~~~i~~~s~SK~~-~~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  296 (391)
T PRK08361        219 YPMIKYAPDNTILANSFSKTF-AMTGWRLGFVIAPE-QVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRK  296 (391)
T ss_pred             CCHhhcCCCCEEEEecCchhc-CCcHhhhhhhccCH-HHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHH
Confidence             11  1225689999999999 55689999999974 4555454444333334455555544443321      223333


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCC-HHhHHHHHhhc-CcceeccCCCCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGS-LALSKHVVETT-KYFSITVSFGSVK  332 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~l-~~~gi~~~~G~~~  332 (386)
                      .+.++.+.+.+.+++.+              +..+.    ...++ ++++.++. .....++.+.+ ...|+.+.+|..+
T Consensus       297 ~~~~~~~~~~~~L~~~~--------------~~~~~----~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f  358 (391)
T PRK08361        297 EYNERRKLVLKRLKEMP--------------HIKVF----EPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAF  358 (391)
T ss_pred             HHHHHHHHHHHHHHhCC--------------CCeec----CCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhh
Confidence            44444555555555432              11111    11333 45556642 22344555555 3468877777642


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      .                     ..++++|||+++.  +++++.++.|++.+++
T Consensus       359 ~---------------------~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        359 G---------------------KAGEGYIRISYATSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             C---------------------CCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            1                     1135789999984  4555566666666654

>PRK12414 putative aminotransferase; Provisional

Probab=99.96  E-value=3.2e-27  Score=221.52  Aligned_cols=287  Identities=18%  Similarity=0.188  Sum_probs=190.4

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC-----ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +++++++++++++|.+     +.++++++++++. ++.+++++||+|++++|+|..+.    ..++..
T Consensus        59 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~  134 (384)
T PRK12414         59 HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYA----PIVRLQ  134 (384)
T ss_pred             CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchH----HHHHHc
Confidence            4568776 876 8999999999988862     3555666668887 45668899999999999998875    445567


Q ss_pred             CcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       118 g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      |.+++.++.+      |++++++.+++++++|++++|+||||.+++   +++|.++|+++|+++|+||+|....+.    
T Consensus       135 g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~  214 (384)
T PRK12414        135 GATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARH  214 (384)
T ss_pred             CCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCc
Confidence            8888887753      789999988889999999999999999974   788999999999999999998632221    


Q ss_pred             CCC----C-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHH
Q 016612          185 RPL----E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEK  256 (386)
Q Consensus       185 ~~~----~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  256 (386)
                      .+.    . .+..+++.|+||.+ |.+|+|+||+++++ ++.+.+...........+...+.++...++.   .....+.
T Consensus       215 ~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRiG~~v~~~-~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~  292 (384)
T PRK12414        215 HSMARHRELAERSVIVSSFGKSY-HVTGWRVGYCLAPA-ELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAF  292 (384)
T ss_pred             cCcccCcCccCcEEEEecccccc-cCccceEEEEecCH-HHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHH
Confidence            011    1 23579999999999 56689999999874 5555565555433444555555555444432   1122334


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE-EeCC---HHhHHHHHhhcCcceeccCCCCcc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGS---LALSKHVVETTKYFSITVSFGSVK  332 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~---~~~~~~l~~~l~~~gi~~~~G~~~  332 (386)
                      +.++.+.+.+.+++..               ..+.    +..++++.| .++.   ....+.+.+.+...|+.+.+|..+
T Consensus       293 ~~~~r~~l~~~L~~~g---------------~~~~----~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f  353 (384)
T PRK12414        293 YQRKRDLLARELAGSR---------------FELL----PSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAF  353 (384)
T ss_pred             HHHHHHHHHHHHHhCC---------------Ceec----CCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhh
Confidence            4455555555555431               1111    123444444 5532   122333335556678887777643


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  377 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  377 (386)
                      ..-                   +.+++++||+++. +.+++.+.+
T Consensus       354 ~~~-------------------~~~~~~iRis~~~-~~~~~~~~~  378 (384)
T PRK12414        354 YTD-------------------GTDTGLIRLSFSK-DDATLVEGA  378 (384)
T ss_pred             cCC-------------------CCCCCEEEEEecC-CHHHHHHHH
Confidence            210                   1235789999996 344444444

>PRK08068 transaminase; Reviewed

Probab=99.96  E-value=7.7e-28  Score=226.34  Aligned_cols=286  Identities=14%  Similarity=0.125  Sum_probs=186.9

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC--C-c-eEEeCcH-HHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g-t~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|++. |.+ +++++.+++.+.+|.  + + .|++++| ++++.. +..++++||.|++++|+|+.+.    ..++..
T Consensus        63 ~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~  138 (389)
T PRK08068         63 NHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYL----SGVALA  138 (389)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHhc
Confidence            4568766 776 788888888766663  2 3 4555555 588864 5667899999999999999885    455678


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      |++++.++.+       |++++++.+.+++++|++++|+||||.+++   +++|.++|++++++||+||+|..-.+.   
T Consensus       139 g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~  218 (389)
T PRK08068        139 RAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQK  218 (389)
T ss_pred             CCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCC
Confidence            8998888763       567888888888999999999999999997   568888999999999999998531111   


Q ss_pred             --CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC----cHHHHH
Q 016612          185 --RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRV  254 (386)
Q Consensus       185 --~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  254 (386)
                        ...    ..+..+++.|+||.+ |.+|+|+||++++ +.+.+.+.........+.++..+.++...+.    .+....
T Consensus       219 ~~s~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  296 (389)
T PRK08068        219 PVSFLQTPGAKDVGIELYTLSKTF-NMAGWRVAFAVGN-ESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELV  296 (389)
T ss_pred             CcChhhCCCccCCEEEEecchhcc-CCccceeEeEecC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHH
Confidence              111    123568999999999 5678999999976 5565555544443333333323333333221    122333


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCCHHhHHHHHhhcCc-ceeccCCCCcc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKY-FSITVSFGSVK  332 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~-~gi~~~~G~~~  332 (386)
                      +.+.++.+.+.+.+++..         +      .+.    ...++ ++++.+++......+.+.+.. .|+.+.+|..+
T Consensus       297 ~~~~~~r~~~~~~L~~~g---------~------~~~----~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f  357 (389)
T PRK08068        297 ARYESRRNAFISACREIG---------W------EVD----APKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGF  357 (389)
T ss_pred             HHHHHHHHHHHHHHHHCC---------C------ccc----CCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHh
Confidence            344444444555554321         1      111    12344 457777543345667777654 58887776542


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  378 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  378 (386)
                      .                     ..+++++||+++.. .+.+.+.++
T Consensus       358 ~---------------------~~~~~~iRi~~~~~-~~~l~~al~  381 (389)
T PRK08068        358 G---------------------EHGEGYVRVGLLTD-EERLREAVE  381 (389)
T ss_pred             C---------------------ccCCCeEEEEEcCC-HHHHHHHHH
Confidence            1                     01357899999853 355555554

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.96  E-value=2.4e-27  Score=230.05  Aligned_cols=292  Identities=16%  Similarity=0.161  Sum_probs=187.2

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC--C-ceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ..|++. |.+ +|+++.+++.+..+.  + +.|++++|+ ++++ ++.+++++||+|++++|+|+.+.    ..++..|.
T Consensus       179 ~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~----~~~~~~g~  254 (517)
T PRK13355        179 EGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWT----ACVNLAGG  254 (517)
T ss_pred             CCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHH----HHHHHCCC
Confidence            468887 775 788888888665432  3 455566554 8887 45668899999999999999885    45567788


Q ss_pred             EEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----
Q 016612          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----  184 (386)
Q Consensus       120 ~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-----  184 (386)
                      +++.++++       |++++++++++++++|++++|+||||.+++   +++|+++|++||++||+||+|..-.+.     
T Consensus       255 ~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~  334 (517)
T PRK13355        255 TAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT  334 (517)
T ss_pred             EEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc
Confidence            88887642       789999999999999999999999999997   888999999999999999998632211     


Q ss_pred             CCCCC--C-ccEEEeccccccccCCCceEEEEEEc-ChhH----HHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHH
Q 016612          185 RPLEL--G-ADIVMHSATKFIAGHSDVMAGVLAVK-GERL----AKELYFLQNAEGSGLAPFDCWICLRGVKT---MALR  253 (386)
Q Consensus       185 ~~~~~--~-~di~~~S~sK~~~g~~g~~~G~i~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  253 (386)
                      +....  + ..+++.||||.+ +.+|+|+||++++ ++.+    .+.+...... ....+...+.++...+..   ....
T Consensus       335 s~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~a~~~aL~~~~~~~~~  412 (517)
T PRK13355        335 SIASLAPDLFCVTFSGLSKSH-MIAGYRIGWMILSGNKRIAKDYIEGLNMLANM-RLCSNVPAQSIVQTALGGHQSVKDY  412 (517)
T ss_pred             cHHHhCCCCeEEEEecchhhc-cCcccceEEEEeeCchhhHHHHHHHHHHHhcC-cCCcChHHHHHHHHHhcCCccHHHH
Confidence            11111  1 245679999998 5668999999964 2322    2222222221 123444455555444432   1111


Q ss_pred             HH---HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE-EeCCH-----HhHHHHHhhcCccee
Q 016612          254 VE---KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSL-----ALSKHVVETTKYFSI  324 (386)
Q Consensus       254 ~~---~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~-----~~~~~l~~~l~~~gi  324 (386)
                      ..   +..+..+.+.+.|+              .++++.+.    ...|+++.| .++..     ...+.+.+.+...|+
T Consensus       413 ~~~~~~~~~~r~~l~~~L~--------------~~~g~~~~----~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV  474 (517)
T PRK13355        413 LVPGGRVYEQRELVYNALN--------------AIPGISAV----KPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKV  474 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHh--------------cCCCcccC----CCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCE
Confidence            11   11222222333332              23333322    234566655 55421     123344455666788


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      .+.+|..+.                     .-.+++||||+..  +.+++.+++|.+++++
T Consensus       475 ~v~pg~~F~---------------------~~~~~~~Ris~~~~~~~l~~a~~rl~~~~~~  514 (517)
T PRK13355        475 LIVQGTGFN---------------------WDKPDHFRVVYLPRLEDLEDAMDRLADFFSY  514 (517)
T ss_pred             EEeCcchhC---------------------CCCcCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            877776521                     0136789999963  6777778888877764

>PRK08912 hypothetical protein; Provisional

Probab=99.96  E-value=6.2e-28  Score=226.94  Aligned_cols=295  Identities=17%  Similarity=0.160  Sum_probs=192.5

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +|+++.+++.+.+|.    + +.++++++++++. ++..++++||+|++++|.|+.+.    .+++..
T Consensus        56 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~  131 (387)
T PRK08912         56 SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYL----PLIRRA  131 (387)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHc
Confidence            4568876 876 889999888877664    2 3444555568886 45667899999999999998885    556788


Q ss_pred             CcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       118 g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      |.+++.++.+      |++++++.+.++++++++++|+||||.+.+   +++|.++|+++++++|+||+|+...+.    
T Consensus       132 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  211 (387)
T PRK08912        132 GGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRH  211 (387)
T ss_pred             CCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCC
Confidence            8888877653      689999988889999999999999999986   777999999999999999998532211    


Q ss_pred             ----CCCC-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHH
Q 016612          185 ----RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVE  255 (386)
Q Consensus       185 ----~~~~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  255 (386)
                          .... .+.+++++|+||.+ |.+|+|+||+++++ .+.+.+...........++..+.++...+..    +....+
T Consensus       212 ~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  289 (387)
T PRK08912        212 IPLMTLPGMRERTVKIGSAGKIF-SLTGWKVGFVCAAP-PLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRA  289 (387)
T ss_pred             cChhhCCCccCceEEEeechhhc-cCcCceeEEEecCH-HHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHH
Confidence                1111 25689999999998 66789999999874 4555554444333333333333333332221    122233


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC---HHhHHHHHhhc-CcceeccCCCCc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKHVVETT-KYFSITVSFGSV  331 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l-~~~gi~~~~G~~  331 (386)
                      .+.++.+.+.+.|++..         +      .+.  .+. .+.++++.++.   ......+.+.+ ...|+.+.+|..
T Consensus       290 ~~~~~~~~l~~~L~~~g---------~------~~~--~~~-g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~  351 (387)
T PRK08912        290 DLARSRDRLAAGLRRIG---------F------PVL--PSQ-GTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSA  351 (387)
T ss_pred             HHHHHHHHHHHHHHhCC---------C------ccc--CCC-cceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchh
Confidence            34444444555554321         1      111  111 24556666643   12345566654 456887777654


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          332 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      +..-                   .-..+++||+++.  +.+++.+++|++++++
T Consensus       352 f~~~-------------------~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        352 FYEE-------------------DPVTSVVRFCFAKRDATLDEAVERLAAARRR  386 (387)
T ss_pred             hCCC-------------------CCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            2100                   0125789999985  5566667777776653

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.96  E-value=5.9e-28  Score=232.42  Aligned_cols=198  Identities=18%  Similarity=0.214  Sum_probs=145.1

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcH-HHHHHHH-HHhc-CCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALAAV-THLL-GTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-t~al~~~-~~~~-~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ....|+.. |.+ +|+++.+++.+..|.+   +.|++++| ++++..+ ..++ ++||.|++++|.|+.+.    ..++.
T Consensus       107 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~----~~~~~  182 (481)
T PTZ00377        107 GTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYS----AAITL  182 (481)
T ss_pred             cccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHH----HHHHH
Confidence            34568887 887 8999999988765543   45555555 5999755 5566 79999999999999885    55567


Q ss_pred             CCcEEEEeCCC-------CHHHHHhhhCC------CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          117 TGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       117 ~g~~~~~v~~~-------d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      .|.+++.++.+       |++++++.+++      +++++++++|+||||.+++   +++|+++|+++|++||+||+|..
T Consensus       183 ~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~  262 (481)
T PTZ00377        183 LGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQE  262 (481)
T ss_pred             cCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHh
Confidence            88888888753       67899888764      7999999999999999997   88999999999999999999864


Q ss_pred             CCcc------CC------CCC-----CccEEEeccccccccCCCceEEEEEE--cChhHHHHHHHhhhhcCCCCChhhHH
Q 016612          181 PVLS------RP------LEL-----GADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDCW  241 (386)
Q Consensus       181 ~~~~------~~------~~~-----~~di~~~S~sK~~~g~~g~~~G~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (386)
                      -.+.      +.      ...     ...+++.|+||.+.+.+|+|+||+++  .++++.+.+...... ....+...+.
T Consensus       263 l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~-~~~~~~~~Q~  341 (481)
T PTZ00377        263 NIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASI-NLCSNVVGQL  341 (481)
T ss_pred             hccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhhe-ecCCChHHHH
Confidence            2221      10      011     13588999999865777899999987  246666666555432 2234555555


Q ss_pred             HHHhcC
Q 016612          242 ICLRGV  247 (386)
Q Consensus       242 ~~~~~~  247 (386)
                      ++...+
T Consensus       342 a~~~~l  347 (481)
T PTZ00377        342 MTGLMC  347 (481)
T ss_pred             HHHHHh
Confidence            554444

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=6.7e-27  Score=223.46  Aligned_cols=292  Identities=15%  Similarity=0.171  Sum_probs=192.2

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcC----CC-ceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcc-
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-  115 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g----~~-~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~-  115 (386)
                      ...|... |.+ +|+++.+++.+.+|    .+ +.|++++|+ +++. ++.++++|||.|++++|.|+.+..    .+. 
T Consensus        79 l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~----~~~~  154 (468)
T PLN02450         79 LALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDR----DLKW  154 (468)
T ss_pred             hhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHH----HHhh
Confidence            3457777 876 89999999987655    22 456666665 8887 456678999999999999998853    333 


Q ss_pred             cCCcEEEEeCCC-------CHHHHHhhhC------CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCC
Q 016612          116 KTGVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (386)
Q Consensus       116 ~~g~~~~~v~~~-------d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~  179 (386)
                      ..|++++.++++       |++++++.+.      .+++++++++|+||||.+++   +++|.++|+++|++||+||+|+
T Consensus       155 ~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~  234 (468)
T PLN02450        155 RTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYS  234 (468)
T ss_pred             cCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEcccc
Confidence            578898888752       5688887764      37899999999999999986   6788999999999999999987


Q ss_pred             CCCcc-----CCC------------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHH
Q 016612          180 SPVLS-----RPL------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       180 ~~~~~-----~~~------------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      ...+.     +..            ..+..+++.|+||.+ +.+|+|+||++++++.+.+.+......  ...+...+.+
T Consensus       235 ~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~Q~a  311 (468)
T PLN02450        235 GTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDL-GLPGFRVGAIYSNDEMVVSAATKMSSF--GLVSSQTQYL  311 (468)
T ss_pred             ccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccC-CCCCccEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHH
Confidence            32211     101            134679999999999 556899999999866555544433222  2345555666


Q ss_pred             HHhcCCc-------HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC-CceEEEEeCCH-----
Q 016612          243 CLRGVKT-------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSL-----  309 (386)
Q Consensus       243 ~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~~-----  309 (386)
                      +...++.       +......+.+..+.+.+.|++..         +      .+.    ... |.++|+.++..     
T Consensus       312 ~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~g---------i------~~~----~~~~g~flwi~l~~~~~~~~  372 (468)
T PLN02450        312 LSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAG---------I------KCL----KSNAGLFCWVDMRHLLKSNT  372 (468)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC---------C------ccc----CCCceEEEEEEchHhcCcCC
Confidence            5555443       12223333444444444444321         1      111    123 34666666421     


Q ss_pred             -HhHHHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhcC
Q 016612          310 -ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRTG  384 (386)
Q Consensus       310 -~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~~  384 (386)
                       ....++.+.+ ...|+.+.+|..+.                     ...+++|||+++.   +++++.+++|++++++.
T Consensus       373 ~~~~~~l~~~ll~~~gV~v~PG~~f~---------------------~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~  431 (468)
T PLN02450        373 FEAEMELWKKIVYEVKLNISPGSSCH---------------------CTEPGWFRVCFANMSEETLDLAMKRLKSFVESD  431 (468)
T ss_pred             chHHHHHHHHHHHhCCEEEeCccccC---------------------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence             1112334333 34688888876532                     1136789999983   56777788888887653

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.96  E-value=2.9e-27  Score=225.22  Aligned_cols=290  Identities=16%  Similarity=0.140  Sum_probs=195.7

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCCceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEE
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKADRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~  121 (386)
                      ...|++. |.+ +++.+.+++....+.++.|++++| ++++. ++.++++|||.|++++|+|+.+.    ..++..|+++
T Consensus       114 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~----~~~~~~g~~~  189 (431)
T PRK15481        114 PRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSI----NMLRYAGFSA  189 (431)
T ss_pred             hhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCeE
Confidence            3457776 654 677777776654444445555555 58887 45567899999999999999885    5666889999


Q ss_pred             EEeCCC----CHHHHHhhhCCCceEEEEe-CCCCCCcccccH---HHHHHHHHHc-CCEEEEeCCCCCCCc---cCCC--
Q 016612          122 KRVNTC----DLDEVASAIGPWTKLVWVE-SPTNPRQQICDI---RKIAEMAHAH-GALLLVDNSIMSPVL---SRPL--  187 (386)
Q Consensus       122 ~~v~~~----d~~~l~~~~~~~~~~v~~~-~~~nptG~~~~l---~~i~~la~~~-~~~li~D~a~~~~~~---~~~~--  187 (386)
                      +.++.+    |++++++++++++++++++ +||||||.+++.   ++|.++|+++ +++||+||+|..-..   ....  
T Consensus       190 ~~v~~~~~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~  269 (431)
T PRK15481        190 SPVSVDAEGMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQ  269 (431)
T ss_pred             EeeccCCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcC
Confidence            998864    7889999888789998887 999999999985   5999999999 999999999863211   1111  


Q ss_pred             CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc------HHHHHHHHHHHH
Q 016612          188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNA  261 (386)
Q Consensus       188 ~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  261 (386)
                      .....+++.||||.++  +|+|+||++++ +.+.+.+...........+...+.++...+..      +....+.+.++.
T Consensus       270 ~~~~vi~~~SfSK~~~--~GlRiG~~i~~-~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r  346 (431)
T PRK15481        270 TTQRWALIRSVSKALG--PDLRLAFVASD-SATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRR  346 (431)
T ss_pred             CCCCEEEEeeeccccC--CCceeEEEeCC-HHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            2246799999999995  58999999986 44555554443333334566666665554432      122233344444


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      +.+.+.+++..         +.      +  .. +..|.++++.++.  ....+.+.+...|+.+.+|..+..   +   
T Consensus       347 ~~~~~~L~~~~---------~~------~--~~-p~gg~f~~~~l~~--~~~~~~~~l~~~gV~v~pg~~f~~---~---  400 (431)
T PRK15481        347 QKLARALQQYG---------IA------I--PS-PGDGLNLWLPLDT--DSQATALTLAKSGWLVREGEAFGV---S---  400 (431)
T ss_pred             HHHHHHHHHcC---------Cc------c--cc-CCCeEEEEEECCC--CHHHHHHHHHHCCcEEecCCcccc---C---
Confidence            55555555421         11      1  01 2246777777753  245566666677888888765320   0   


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHh
Q 016612          342 SHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALR  382 (386)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~  382 (386)
                                    ...+++|||++.   +++++.++.|++++.
T Consensus       401 --------------~~~~~iRis~~~~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        401 --------------APSHGLRITLSTLNDAEINRLAADLHQALN  430 (431)
T ss_pred             --------------CCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence                          013579999984   677778888887764

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.96  E-value=3.8e-27  Score=221.52  Aligned_cols=287  Identities=16%  Similarity=0.116  Sum_probs=188.3

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|++. |.+ +++++.+++.+.+|.    ++.+++++|+ +++..+ ..++++||.|++++|+|+.+.    ..++..
T Consensus        62 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~----~~~~~~  137 (385)
T PRK09276         62 NHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYK----IGTIFA  137 (385)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChH----HHHHHc
Confidence            4568776 766 889999988877664    2346666665 888754 557899999999999999885    445678


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      |.+++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|.++|+++|++||+||+|....+.   
T Consensus       138 g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~  217 (385)
T PRK09276        138 GGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYK  217 (385)
T ss_pred             CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCC
Confidence            8888887652       578888888888999999999999999997   688999999999999999998632211   


Q ss_pred             --CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH----HHHH
Q 016612          185 --RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM----ALRV  254 (386)
Q Consensus       185 --~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  254 (386)
                        ...    ..+.++++.|+||.+ |.+|+|+||++++ +.+.+.+.........+.+...+.++...+...    ....
T Consensus       218 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  295 (385)
T PRK09276        218 PPSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGN-ADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELR  295 (385)
T ss_pred             CCChhccCCCcCCEEEEecchhhc-CCcchhheeeeCC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHH
Confidence              111    124568999999999 5678999999986 456555555444333344444444444444321    2222


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC-cceeccCCCCccc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKS  333 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~~~~G~~~~  333 (386)
                      +.+.++.+.+.+.+++.               +..++  .+. .+.++++.+++.....++.+.+. ..|+.+.+|..+.
T Consensus       296 ~~~~~~~~~l~~~L~~~---------------~~~~~--~~~-~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~  357 (385)
T PRK09276        296 KIYQERRDILVEGLRKL---------------GLEVE--PPK-ATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFG  357 (385)
T ss_pred             HHHHHHHHHHHHHHHhC---------------CCccc--CCC-cceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhC
Confidence            33334444444444432               11111  111 24446777754333555666553 4688777776421


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  378 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  378 (386)
                                           ...++++|||++. +.+++.+.++
T Consensus       358 ---------------------~~~~~~~Ris~~~-~~~~l~~~l~  380 (385)
T PRK09276        358 ---------------------EYGEGYFRIALTV-PDERIEEAVE  380 (385)
T ss_pred             ---------------------CCCCCeEEEEeCC-CHHHHHHHHH
Confidence                                 0125689999985 3344444443

>PRK07682 hypothetical protein; Validated

Probab=99.96  E-value=3.6e-27  Score=221.13  Aligned_cols=293  Identities=16%  Similarity=0.189  Sum_probs=197.1

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCc-HHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTS-GMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~-gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +|+++.+++.+.+|.    ++.|++++ +++++.+ +..++++||.|++++|+|+.+.    ..++..
T Consensus        50 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~  125 (378)
T PRK07682         50 YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYA----PLVTLA  125 (378)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhH----HHHHHc
Confidence            4568765 776 899999998877664    23455555 5689874 4567899999999999998775    445566


Q ss_pred             CcEEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC--
Q 016612          118 GVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (386)
Q Consensus       118 g~~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~--  185 (386)
                      |.+++.++.       .|++++++++.++++++++++|+||||.+.+   +++|.++|+++++++|+||+|....+..  
T Consensus       126 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~  205 (378)
T PRK07682        126 GGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAY  205 (378)
T ss_pred             CCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCC
Confidence            777777764       2789999999889999999999999999985   8899999999999999999987433211  


Q ss_pred             -----CCC-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHH
Q 016612          186 -----PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVE  255 (386)
Q Consensus       186 -----~~~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  255 (386)
                           ... .+.++++.|+||.+ +.+|+|+||++++ +.+.+.+...........+...+.++...++.    +....+
T Consensus       206 ~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~-~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  283 (378)
T PRK07682        206 TSFASIKGMRERTILISGFSKGF-AMTGWRLGFIAAP-VYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRD  283 (378)
T ss_pred             CChhhcccccCCEEEEecCcccc-cChhhhhhhhhcC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHH
Confidence                 011 24679999999999 5568999999987 45666555444433334455555554444432    233334


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE-EeC-CHHhHHHHHhhc-CcceeccCCCCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTG-SLALSKHVVETT-KYFSITVSFGSVK  332 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~l-~~~gi~~~~G~~~  332 (386)
                      .+.++.+.+.+.|++..         +.      +.    ...++++.| .+. .......+.+.+ ...|+.+.+|..+
T Consensus       284 ~~~~~~~~~~~~L~~~~---------~~------~~----~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f  344 (378)
T PRK07682        284 SYRKRRNFFVTSFNEIG---------LT------CH----VPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVF  344 (378)
T ss_pred             HHHHHHHHHHHHHHHCC---------Cc------cC----CCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhh
Confidence            45555555666665431         11      10    123444444 442 122345566654 3568888877652


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      .                     ...++++|||++.  +++++.+++|++++++.
T Consensus       345 ~---------------------~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        345 G---------------------ESGEGFIRCSYATSLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             C---------------------cCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence            1                     0125789999985  67777888888887653

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.96  E-value=7.3e-27  Score=220.26  Aligned_cols=296  Identities=19%  Similarity=0.214  Sum_probs=193.5

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCC-----ceEEeCcHH-HHHHH-HHHhcCC---CCEEEecCCCCCcHHHHHhh
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGM-AALAA-VTHLLGT---GEEIVAGDDLYGGTDRLLSR  112 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~gt-~al~~-~~~~~~~---g~~Vlv~~~~~~~~~~~~~~  112 (386)
                      ....|.+. |.+ +|+++.+++.+.+|.+     +.|++++|+ +++.. +..++++   ||.|++++|.|+.+.    .
T Consensus        57 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~----~  132 (396)
T PRK09147         57 GLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYE----G  132 (396)
T ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchH----H
Confidence            35668877 776 8999999998876632     367666665 88874 4557899   999999999998885    5


Q ss_pred             hcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCC
Q 016612          113 VTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (386)
Q Consensus       113 ~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~  182 (386)
                      +++..|.+++.++.+       |++++++.+.++++++++++|+||||.+++   +++|.++|++|+++||+||+|....
T Consensus       133 ~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~  212 (396)
T PRK09147        133 AALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIY  212 (396)
T ss_pred             HHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccc
Confidence            566788999988763       678888777778999999999999999985   7888999999999999999986432


Q ss_pred             ccC---C---C---------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC
Q 016612          183 LSR---P---L---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (386)
Q Consensus       183 ~~~---~---~---------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (386)
                      +..   +   .         ..+..+++.|+||.+ +.+|+|+||++++ +.+.+.+...........+...+.+....+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~  290 (396)
T PRK09147        213 FDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRS-NVPGLRSGFVAGD-AALLKKFLLYRTYHGCAMPPAVQAASIAAW  290 (396)
T ss_pred             cCCCCCCchhhhhccccCccccccEEEEecccccc-CCccceeeeecCC-HHHHHHHHHHhhhcccCCCHHHHHHHHHHh
Confidence            111   0   0         124569999999988 4568999999987 455555554444334455555555544433


Q ss_pred             Cc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhc-Ccce
Q 016612          248 KT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFS  323 (386)
Q Consensus       248 ~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g  323 (386)
                      ..   +....+.+.++.+.+.+.+++.          +.      +  .. +..|.++++.++.  ....+.+.+ ...|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~L~~~----------~~------~--~~-p~~g~f~~~~~~~--~~~~~~~~ll~~~g  349 (396)
T PRK09147        291 NDEAHVRENRALYREKFDAVTPILAPV----------LD------V--QL-PDAGFYLWAKVPG--DDTEFARRLYADYN  349 (396)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHh----------cC------C--CC-CCeeEEEEEECCC--CHHHHHHHHHHhCC
Confidence            21   2222333344444444444321          10      0  01 2246677777751  234454544 3567


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                      +.+.+|..+......               .....+++||+++.  ++.++.+++|++.++
T Consensus       350 v~v~pg~~f~~~~~~---------------~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        350 VTVLPGSYLAREAHG---------------VNPGAGRVRIALVAPLAECVEAAERIVDFCR  395 (396)
T ss_pred             EEEeCCccccccccC---------------CCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence            877777653210000               00125789999975  555566666666553

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=2.1e-27  Score=206.66  Aligned_cols=328  Identities=17%  Similarity=0.168  Sum_probs=212.7

Q ss_pred             CCccceeeccCCCCCC-CCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcC----CCceEEeCcH
Q 016612            7 PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSG   79 (386)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~g   79 (386)
                      ++....++.++.++.+ ||.+........+ ...++.....++|++. |.+ .|+++.+.+.+-..    +++.++++++
T Consensus        57 p~~~k~iipl~~GDPsv~~~~~ts~~a~~A-v~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC  135 (447)
T KOG0259|consen   57 PEKKKPILPLGHGDPSVYPCFRTSQEAEQA-VVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC  135 (447)
T ss_pred             cccCceeccCCCCCCCccccccCCHHHHHH-HHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence            3333366666655444 6665544333222 2335567888999998 886 68888888665433    3466666666


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCC
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNP  151 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~np  151 (386)
                      ++|+. ++.++.+||..||+|+|+|+-|.    ..+...|++++.++..       |++.++..++++|.++++.||+||
T Consensus       136 ~qAIe~~i~~LA~p~aNILlPrPGfp~Y~----~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NP  211 (447)
T KOG0259|consen  136 SQAIELAISSLANPGANILLPRPGFPLYD----TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNP  211 (447)
T ss_pred             hHHHHHHHHHhcCCCCceecCCCCCchHH----HhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCC
Confidence            79997 66678899999999999998885    5567889999999863       899999999999999999999999


Q ss_pred             Cccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC----C----CCCCccEEEeccccccccCCCceEEEEEEcChh-
Q 016612          152 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGER-  219 (386)
Q Consensus       152 tG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~----~----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~-  219 (386)
                      +|.++.   +++|++.|+++++.+|.||+|..-.+.+    +    ...-..+.++|.||.+-.| |+|.||++..++. 
T Consensus       212 cGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VP-GWRlGWi~~hD~~g  290 (447)
T KOG0259|consen  212 CGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVP-GWRLGWIALHDPRG  290 (447)
T ss_pred             CcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccC-CceeeeEEEecccc
Confidence            999985   8999999999999999999987544431    1    1123579999999988554 7899999988653 


Q ss_pred             H---HHHHHHhhhhcCC--CCChhhHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchh
Q 016612          220 L---AKELYFLQNAEGS--GLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  289 (386)
Q Consensus       220 ~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  289 (386)
                      +   ...+..+......  +....-+.++-.-++     .+..+..-+..++.-.-..              |+++|+..
T Consensus       291 vf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~--------------Lk~IP~l~  356 (447)
T KOG0259|consen  291 VFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSR--------------LKDIPCLT  356 (447)
T ss_pred             cccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHH--------------HhcCCCcc
Confidence            1   1111222222222  222222222211111     1122222233333333334              44444444


Q ss_pred             hhhhccCCCCceEEEE-e---------CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCC
Q 016612          290 LHYSQAKGAGSVLSFL-T---------GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  359 (386)
Q Consensus       290 i~~~~~~~~~~~~~~~-~---------~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  359 (386)
                      ...+   ..|.++.+. +         ++.+++.++.++-.   +.+-+|.++.                       .++
T Consensus       357 cp~k---Peg~mylmv~l~~s~~~~~~dD~dFc~kL~~Ees---v~~LPG~af~-----------------------~~n  407 (447)
T KOG0259|consen  357 CPVK---PEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREES---VICLPGQAFG-----------------------LKN  407 (447)
T ss_pred             cCcC---CCcceEEEeccchhhhccccccHHHHHHHhhhcc---eEEecccccc-----------------------CCC
Confidence            2222   234455443 1         44566666666644   4344555422                       278


Q ss_pred             eEEEEec--cCChHHHHHHHHHHHhc
Q 016612          360 LVRISVG--IEDVNDLISDLDKALRT  383 (386)
Q Consensus       360 ~iRis~~--~~~~~~~i~~l~~~l~~  383 (386)
                      |+|++++  .+.+++..++|++.-.+
T Consensus       408 w~Ri~i~~~~~~leea~~Rik~Fc~R  433 (447)
T KOG0259|consen  408 WLRIVITVEEEMLEEAFSRIKEFCDR  433 (447)
T ss_pred             eEEEEEccChHHHHHHHHHHHHHHHh
Confidence            9999996  47888888888876644

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.96  E-value=7e-27  Score=219.38  Aligned_cols=288  Identities=16%  Similarity=0.176  Sum_probs=188.4

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ....|.+. |.+ +++++.+++.+.+|.    ++.++++++++++. ++.+++++||.|++++|.|+.+.    ..++..
T Consensus        58 ~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~  133 (384)
T PRK06348         58 GHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYK----DQIEMV  133 (384)
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHc
Confidence            34668877 776 788899888766543    24444444558987 45667899999999999999886    445567


Q ss_pred             CcEEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC--
Q 016612          118 GVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (386)
Q Consensus       118 g~~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~--  185 (386)
                      |.+++.++.       .|++++++.+++++++|++++|+||||.+.+   +++|.++|+++|++||+||+|....+..  
T Consensus       134 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~  213 (384)
T PRK06348        134 GGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDF  213 (384)
T ss_pred             CCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCc
Confidence            778877763       2789999988889999999999999999986   7889999999999999999987432210  


Q ss_pred             -C---CC--CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH----HHHH
Q 016612          186 -P---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA----LRVE  255 (386)
Q Consensus       186 -~---~~--~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  255 (386)
                       +   ..  .+.++++.|+||.+ +.+|+|+||++++ +.+.+.+...........+...+.++...+....    ....
T Consensus       214 ~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  291 (384)
T PRK06348        214 VPMATLAGMPERTITFGSFSKDF-AMTGWRIGYVIAP-DYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKE  291 (384)
T ss_pred             cchhhcCCCcCcEEEEecchhcc-CCccccceeeecC-HHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHH
Confidence             1   11  34679999999999 5457999999986 5566666655554444555655555544433211    1222


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCC-HHhHHHHHhhc-CcceeccCCCCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGS-LALSKHVVETT-KYFSITVSFGSVK  332 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~l-~~~gi~~~~G~~~  332 (386)
                      .+.++.+.+.+.+++.+              +..+.    ...++ ++++.++. ......+.+.+ ...|+.+.+|..+
T Consensus       292 ~~~~r~~~~~~~L~~~~--------------~~~~~----~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f  353 (384)
T PRK06348        292 EFQKRLEYAYKRIESIP--------------NLSLH----PPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAF  353 (384)
T ss_pred             HHHHHHHHHHHHHhcCC--------------Cceec----cCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhh
Confidence            23333444444444321              11111    12334 45666642 22345556554 3568877777653


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  378 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  378 (386)
                      .                     ..++++||||++. +.+++.+.++
T Consensus       354 ~---------------------~~~~~~iRi~~~~-~~~~l~~al~  377 (384)
T PRK06348        354 G---------------------ESGEGYIRLACTV-GIEVLEEAFN  377 (384)
T ss_pred             c---------------------cCCCCeEEEEecC-CHHHHHHHHH
Confidence            2                     0125789999974 4444444443

>PRK08960 hypothetical protein; Provisional

Probab=99.96  E-value=4.4e-27  Score=221.05  Aligned_cols=289  Identities=17%  Similarity=0.126  Sum_probs=186.4

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC--C-ceEEeC-cHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFT-SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~-~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ..|.+. |.+ +|+++.+++.+.+|.  + +.|+++ ++++++.. +..++++||+|++++|+|+.+...    ++..|.
T Consensus        63 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~----~~~~g~  138 (387)
T PRK08960         63 TRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHF----LRLVEG  138 (387)
T ss_pred             CccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCC
Confidence            457666 776 788888888766543  2 344455 45699975 455789999999999999998643    445677


Q ss_pred             EEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----C
Q 016612          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R  185 (386)
Q Consensus       120 ~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~  185 (386)
                      +++.++.+       |++++++.++++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|..-.+.    .
T Consensus       139 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~  218 (387)
T PRK08960        139 AAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAAS  218 (387)
T ss_pred             eEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence            77766642       688999988888999999999999999987   567888899999999999998632221    1


Q ss_pred             CCCC-CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC-----cHHHHHHHHHH
Q 016612          186 PLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQD  259 (386)
Q Consensus       186 ~~~~-~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  259 (386)
                      .... ...++++|+||.+ |.+|+|+||+++++ .+.+.+...........+...+.++...+.     .+....+.+.+
T Consensus       219 ~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~  296 (387)
T PRK08960        219 VLEVDDDAFVLNSFSKYF-GMTGWRLGWLVAPP-AAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFAR  296 (387)
T ss_pred             hhhccCCEEEEeeccccc-CCcccEEEEEEcCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence            1111 3568999999999 56689999999974 565556555544444455555554444332     12222334444


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhc-CcceeccCCCCccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISM  337 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l-~~~gi~~~~G~~~~~~~~  337 (386)
                      +.+.+.+.|++..         +      .+. ..+ ..+.++++.+++ ......+.+.+ ...|+.+.+|..+..   
T Consensus       297 ~~~~l~~~L~~~~---------~------~~~-~~p-~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---  356 (387)
T PRK08960        297 RRDFLLPALRELG---------F------GIA-VEP-QGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGR---  356 (387)
T ss_pred             HHHHHHHHHHhcC---------C------cCC-cCC-CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCC---
Confidence            5555555555431         1      110 011 124556666643 12245566554 456888887765320   


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHH
Q 016612          338 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK  379 (386)
Q Consensus       338 p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~  379 (386)
                                       +..++++||+++. +.+.+.+.+++
T Consensus       357 -----------------~~~~~~iRi~~~~-~~~~l~~al~~  380 (387)
T PRK08960        357 -----------------HQAGQHVRFAYTQ-SLPRLQEAVER  380 (387)
T ss_pred             -----------------CCCCCeEEEEecC-CHHHHHHHHHH
Confidence                             0124689999986 45555555543

>PRK06855 aminotransferase; Validated

Probab=99.96  E-value=9.2e-27  Score=221.24  Aligned_cols=169  Identities=20%  Similarity=0.277  Sum_probs=127.7

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcH-HHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-t~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...+.|.+. |.+ +|+++.+++.+.+|.+   +.|++++| ++++..++.++++||.|++++|+|+.+...   .....
T Consensus        64 ~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~~~Gd~Vlv~~P~Y~~~~~~---~~~~~  140 (433)
T PRK06855         64 DKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREARVIGPSPAYSTHSSA---EAAHA  140 (433)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhcCCCCeEEEeCCCCchHHHH---HHHhc
Confidence            345678887 887 8999999998876643   34555555 588986667889999999999999986421   12244


Q ss_pred             CcEEEEeCC-------CCHHHHHhhhC--CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-
Q 016612          118 GVVVKRVNT-------CDLDEVASAIG--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-  184 (386)
Q Consensus       118 g~~~~~v~~-------~d~~~l~~~~~--~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-  184 (386)
                      |++++.++.       .|++++++.+.  ++++++++++|+||||.+++   +++|.++|+++|++||+||+|..-.+. 
T Consensus       141 g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~  220 (433)
T PRK06855        141 GYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG  220 (433)
T ss_pred             CCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence            666666643       27899999886  46899999999999999986   678889999999999999998633221 


Q ss_pred             ----CC---CCCCccEEEeccccccccCCCceEEEEEEc
Q 016612          185 ----RP---LELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (386)
Q Consensus       185 ----~~---~~~~~di~~~S~sK~~~g~~g~~~G~i~~~  216 (386)
                          ..   ...+..|++.|+||.+ +.+|+|+||++++
T Consensus       221 ~~~~sl~~~~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p  258 (433)
T PRK06855        221 KKTVPLSEVIGDVPGIALKGISKEL-PWPGSRCGWIEVY  258 (433)
T ss_pred             CCCCCHHHHcCcCCeEEEecCcccc-CCCcceEEEEEEe
Confidence                11   1112459999999999 4458999999984

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.96  E-value=1.9e-27  Score=217.27  Aligned_cols=285  Identities=19%  Similarity=0.243  Sum_probs=206.8

Q ss_pred             CCCCchHHHHHHHHHhhcC-CC-ceEEeCcHH-HHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC
Q 016612           51 RSGNPTRDALESLLAKLDK-AD-RALCFTSGM-AALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (386)
Q Consensus        51 ~~g~~~~~~l~~~l~~~~g-~~-~~i~~~~gt-~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
                      ++.++...++++.+++++| .+ +.|+++.|+ +.|.. +..++.+||.|+++.|+|..|.    ..++..|.+++.++.
T Consensus        53 rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~----~~a~~~g~~~~~v~~  128 (356)
T COG0079          53 RYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYE----IAAQLAGAEVVKVPL  128 (356)
T ss_pred             cCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHH----HHHHhcCCeEEEecc
Confidence            3334467788899999998 55 677778887 77875 4558899999999999999885    567789999999987


Q ss_pred             ----CCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCccCCC----CCCccEEEe
Q 016612          127 ----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSRPL----ELGADIVMH  196 (386)
Q Consensus       127 ----~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~~~~----~~~~di~~~  196 (386)
                          .|++.+.+.+.+++++|++++||||||...+.++|.+++...  +.+||+||+|....-.+..    ...+.+++.
T Consensus       129 ~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlR  208 (356)
T COG0079         129 KEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLR  208 (356)
T ss_pred             cccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEE
Confidence                478889888888999999999999999999888888777754  8899999998632222111    234579999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCC
Q 016612          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       197 S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      ||||.| |.+|+|+||++++ +++.+.+......  .+++...+.++..+++.-   ........+..+++.+.+++.. 
T Consensus       209 TfSKa~-gLAGlRlGy~ia~-~~~i~~l~~vr~p--~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-  283 (356)
T COG0079         209 TFSKAF-GLAGLRVGYAIAN-PELIAALNKVRPP--FNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG-  283 (356)
T ss_pred             ecHHhh-hcchhceeeccCC-HHHHHHHHHhcCC--CCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999999 7789999998876 5666666655543  355666666665555432   3333344444555555555442 


Q ss_pred             cceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          274 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       274 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                      +..             ++    ++.++++.+.+++.. ...+.+.+..+|+.++.... .                    
T Consensus       284 ~~~-------------v~----pS~aNFvlv~~~~~~-~~~l~~~L~~~giivR~~~~-~--------------------  324 (356)
T COG0079         284 LFG-------------VF----PSQANFVLVRVPDAE-AAALAEALLKKGILVRDCSS-V--------------------  324 (356)
T ss_pred             CCe-------------ec----CCCCcEEEEECCCcc-HHHHHHHHHHCCEEEEeCCC-C--------------------
Confidence            100             11    335788999887644 66788888888888775332 0                    


Q ss_pred             cCCCCCeEEEEecc-CChHHHHHHHHHHHhcC
Q 016612          354 RGLTEDLVRISVGI-EDVNDLISDLDKALRTG  384 (386)
Q Consensus       354 ~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~~  384 (386)
                       +..++++||+++. ++.+.+++.|.+.++..
T Consensus       325 -~~~~~~lRitvgt~een~~ll~AL~~~~~~~  355 (356)
T COG0079         325 -GLLPGYLRITVGTPEENDRLLAALREVLKGL  355 (356)
T ss_pred             -CCCCCeEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence             2346789999974 88899999999988653

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.1e-26  Score=219.27  Aligned_cols=294  Identities=16%  Similarity=0.134  Sum_probs=186.7

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCC---c-eEEeCcHH-HHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---R-ALCFTSGM-AALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~-~i~~~~gt-~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ..+.|++. |.+ +|+++.+++.+.+|.+   + .|++++|+ +++.. +.+++++||.|++++|+|+.+.    ..++.
T Consensus        63 ~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~  138 (403)
T PRK08636         63 KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHS----QAFIL  138 (403)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHh
Confidence            45778887 886 8999999998876642   3 56666665 88874 5667899999999999999885    55667


Q ss_pred             CCcEEEEeCCC-------CHH----HHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCC
Q 016612          117 TGVVVKRVNTC-------DLD----EVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (386)
Q Consensus       117 ~g~~~~~v~~~-------d~~----~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~  179 (386)
                      .|.+++.++.+       |++    .++++++   ++++++++++|+||||.+++   +++|.++|++|+++||+||+|+
T Consensus       139 ~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~  218 (403)
T PRK08636        139 AGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYA  218 (403)
T ss_pred             cCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccch
Confidence            88998887642       444    3455553   57899999999999999986   6889999999999999999986


Q ss_pred             CCCcc-----CC--CC--CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-
Q 016612          180 SPVLS-----RP--LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-  249 (386)
Q Consensus       180 ~~~~~-----~~--~~--~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  249 (386)
                      .-.+.     ..  .+  .+..++++|+||.+ |.+|+|+||++++ +++.+.+.........+.+...+.++...+.. 
T Consensus       219 ~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~iv~~-~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~  296 (403)
T PRK08636        219 DITFDGYKTPSILEVEGAKDVAVESYTLSKSY-NMAGWRVGFVVGN-KKLVGALKKIKSWLDYGMFTPIQVAATIALDGD  296 (403)
T ss_pred             hhccCCCCCCChhcCCCccccEEEEEeccccc-CCccceeeeeeCC-HHHHHHHHHHHHHhcccCChHHHHHHHHHHhCc
Confidence            32211     11  11  13456789999999 5568999999986 45555554444332223333333333222211 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH---HhHHHHHhh-cCcc
Q 016612          250 ---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---ALSKHVVET-TKYF  322 (386)
Q Consensus       250 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~l~~~-l~~~  322 (386)
                         +....+.+.++.+.+.+.|++.         ++.      +.  . ...|.++++.+++.   ....++.+. ++..
T Consensus       297 ~~~~~~~~~~~~~~~~~l~~~L~~~---------~~~------~~--~-p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~  358 (403)
T PRK08636        297 QSCVEEIRETYRKRRDVLIESFANA---------GWE------LQ--K-PRASMFVWAKIPEPARHLGSLEFSKQLLTEA  358 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC---------CCc------cc--C-CCcceEEEEECCCccCCCCHHHHHHHHHHhC
Confidence               1122233344444444554432         111      10  1 12356777777532   113445544 4456


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      |+.+.+|..+.                     +..++++||+++.  +.+++.+++|+++++.
T Consensus       359 gV~v~pg~~f~---------------------~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        359 KVAVSPGIGFG---------------------EYGDEYVRIALIENENRIRQAARNIKKFLKE  400 (403)
T ss_pred             CEEEecchhhC---------------------cCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            77777765421                     1125789999983  5555566666666654

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.96  E-value=7.3e-27  Score=220.32  Aligned_cols=291  Identities=21%  Similarity=0.248  Sum_probs=195.3

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC--C--ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~--~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|... |.+ +++++.+++.+.+|.  +  +.++++++++++.. +..++++||.|++++|+|+.+.    .+++..|
T Consensus        61 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g  136 (393)
T PRK05764         61 KTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYP----EMVKLAG  136 (393)
T ss_pred             CCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchH----HHHHHcC
Confidence            3457766 654 778888877666553  2  45555555689874 4557899999999999998875    4556788


Q ss_pred             cEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       119 ~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+++.++.+       |++++++.++++++++++++|+||||.+.+   +++|.++|+++|+++++|++|+...+.    
T Consensus       137 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~  216 (393)
T PRK05764        137 GVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEF  216 (393)
T ss_pred             CEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCc
Confidence            998888763       578999999889999999999999999975   788999999999999999998643221    


Q ss_pred             -C-----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHH
Q 016612          185 -R-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRV  254 (386)
Q Consensus       185 -~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  254 (386)
                       .     ....+.++++.|+||.+ +.+|+|+||++++ +++.+.+...........+...++++...+..    +....
T Consensus       217 ~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  294 (393)
T PRK05764        217 TSIASLSPELRDRTITVNGFSKAY-AMTGWRLGYAAGP-KELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMR  294 (393)
T ss_pred             ccHHHcCCCCcCCEEEEecCcccc-cCccceeEEEecC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHH
Confidence             0     11235789999999999 5568999999976 55666666555544556666666665555431    11222


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC-ceEEEEeCCHH-----hHHHHHhhc-CcceeccC
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFLTGSLA-----LSKHVVETT-KYFSITVS  327 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~-----~~~~l~~~l-~~~gi~~~  327 (386)
                      +.+.++.+.+.+.+++.              +++.+.    ...+ .++++.+....     ...++.+.+ +..|+.+.
T Consensus       295 ~~~~~~~~~l~~~L~~~--------------~g~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~  356 (393)
T PRK05764        295 QAFEERRDLMVDGLNEI--------------PGLECP----KPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVV  356 (393)
T ss_pred             HHHHHHHHHHHHHHhhC--------------CCCccc----CCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEc
Confidence            23333444444444433              222222    1223 34555554321     124555444 45688777


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      +|..+.                       .+++||||++.  +++++.+++|.++++.
T Consensus       357 ~g~~f~-----------------------~~~~vRis~~~~~~~~~~~i~~l~~~~~~  391 (393)
T PRK05764        357 PGIAFG-----------------------APGYVRLSYATSLEDLEEGLERIERFLES  391 (393)
T ss_pred             cccccC-----------------------CCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            765421                       14679999974  7788888888887764

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=2.4e-26  Score=218.02  Aligned_cols=292  Identities=15%  Similarity=0.168  Sum_probs=191.9

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcH-HHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g-t~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ..|... |.+ +|+++.+++.+.+|.    + +.|++++| ++++.. +..+++|||.|+++.|.|+++...+   ....
T Consensus        89 ~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~---~~~~  165 (447)
T PLN02607         89 ALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL---RWRT  165 (447)
T ss_pred             hccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH---HhcC
Confidence            346666 876 899999999987662    2 45556666 588874 4557899999999999999886322   2357


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhC------CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          118 GVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      |++++.++.+       |++++++++.      .+++++++++|+||||.+++   +++|.++|+++++++|+||+|+..
T Consensus       166 g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~  245 (447)
T PLN02607        166 GVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGS  245 (447)
T ss_pred             CcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence            8888887653       6788888775      37899999999999999997   788999999999999999998753


Q ss_pred             Ccc-----CCC---------C-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhc
Q 016612          182 VLS-----RPL---------E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (386)
Q Consensus       182 ~~~-----~~~---------~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (386)
                      .+.     +..         . .+..+++.|+||.| |.+|+|+||+++.++.+.+.+......  ...+...+.++...
T Consensus       246 ~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g~~GlRvG~ivs~n~~l~~~~~~~~~~--~~~s~~~q~~~~~~  322 (447)
T PLN02607        246 VFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARRMSSF--TLVSSQTQHLLASM  322 (447)
T ss_pred             ccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-CCCcceEEEEEEcCHHHHHHHHHHhhc--CCCCHHHHHHHHHH
Confidence            321     110         1 23568899999999 556899999998666665544443322  23344455554444


Q ss_pred             CCcH-------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH------HhHH
Q 016612          247 VKTM-------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL------ALSK  313 (386)
Q Consensus       247 ~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~  313 (386)
                      +..-       ....+++.+..+.+.+.|++.         +++-.        . ...|.++|+.++..      +...
T Consensus       323 L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~---------gi~~~--------~-~~ag~fvw~~L~~~~~~~~~~~e~  384 (447)
T PLN02607        323 LSDEEFTENYIRTNRERLRKRYEMIVQGLRRA---------GIECL--------K-GNAGLFCWMNLSPLLETPTREGEL  384 (447)
T ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCCcc--------c-CCeeEEEEEEchHhhcCCCchhHH
Confidence            4321       122233334444444555532         11111        1 12356667766421      1123


Q ss_pred             HHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          314 HVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       314 ~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      ++.+.+ ...|+.+.+|..+.                     +..++|+||+++.   +.+++.+++|.+++++
T Consensus       385 ~l~~~ll~~~gV~v~pG~~f~---------------------~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        385 ALWDSILREVKLNISPGSSCH---------------------CSEPGWFRVCFANMSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             HHHHHHHHhCCEEEcCccccC---------------------CCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence            555444 34678777876521                     1147899999984   6677778888877754

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.96  E-value=4e-27  Score=210.59  Aligned_cols=298  Identities=22%  Similarity=0.230  Sum_probs=203.5

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEe-CcHHHHHH-HHHH--h--c--CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC
Q 016612           56 TRDALESLLAKLDKAD-RALCF-TSGMAALA-AVTH--L--L--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~-~~gt~al~-~~~~--~--~--~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
                      ..++.+++++++.|++ +.|++ ++||++.+ ++..  .  .  ++|.+++++.-+|+++...++.. +..|.++.+++.
T Consensus        45 ~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~V  123 (386)
T COG1104          45 AVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLPV  123 (386)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHH-HhcCCeEEEeCC
Confidence            6788899999999987 45555 55578876 5554  1  1  25889999999999998887665 788999999997


Q ss_pred             C-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccc
Q 016612          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (386)
Q Consensus       127 ~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK  200 (386)
                      +     |+++|+++++++|.+|.+.+.||.+|.+.|+++|.++|+++++++++|.+++.|.++ +....+.|++.+|.||
T Consensus       124 ~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK  203 (386)
T COG1104         124 DSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHK  203 (386)
T ss_pred             CCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhh
Confidence            6     899999999999999999999999999999999999999999999999999999876 3444589999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhhhhcC------CC-CChhhHHHHHhcCC----cHHHHHHHHHHHHHHHHHHHh
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEG------SG-LAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLA  269 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~  269 (386)
                      +. ||.|  +|+++.++..-   +.++...++      ++ .+-+....+..+++    .+.....+.....+.+.+.+.
T Consensus       204 ~~-GpkG--iGaLyv~~~~~---~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~  277 (386)
T COG1104         204 FG-GPKG--IGALYVRPGVR---LEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLL  277 (386)
T ss_pred             cc-CCCc--eEEEEECCCCc---cCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            97 8898  79988864321   222222221      11 11112222222222    222222223333333333333


Q ss_pred             hCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHH
Q 016612          270 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  349 (386)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~  349 (386)
                      +..             |...+.........+++.+.+++.+ .+.++..|...||.++.|++++--..        -+..
T Consensus       278 ~~~-------------p~~~~~g~~~~rlP~~~~~~f~gv~-gE~ll~~L~~~gI~vStGSACsS~~~--------~pSh  335 (386)
T COG1104         278 EII-------------PDVYLNGDDEPRLPNILNFSFPGVE-GESLLLALDLAGIAVSTGSACSSGSL--------EPSH  335 (386)
T ss_pred             hcC-------------CcEEEcCCcccCCCCeEEEEeCCCc-HHHHHHhccccCeEEeccccccCCCC--------CccH
Confidence            321             1222222211223566778887755 88899999999999999987442111        1334


Q ss_pred             HHHhcCCC----CCeEEEEeccCChHHHHHHHHHHHh
Q 016612          350 VRQARGLT----EDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       350 ~~~~~~~~----~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      ++.++|.+    .+.||+|++..++++.++.+.++|+
T Consensus       336 VL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~  372 (386)
T COG1104         336 VLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALK  372 (386)
T ss_pred             HHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHH
Confidence            55666664    3889999997655555555555543

>PRK07550 hypothetical protein; Provisional

Probab=99.96  E-value=1.6e-26  Score=217.32  Aligned_cols=280  Identities=18%  Similarity=0.164  Sum_probs=188.4

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcH-HHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-t~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ....|.+. |.+ +++++.+++.+..|..   +.|++++| ++++.. +.+++++||.|++++|.|+.+.    .+++..
T Consensus        59 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~  134 (386)
T PRK07550         59 AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHK----MWLDML  134 (386)
T ss_pred             CCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhc
Confidence            34568776 887 7889999988776642   45656666 588874 4557899999999999998885    455688


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      |.+++.++.+       |++++++.++++++++++++|+||||.+.+   +++|.++|+++|++||+|++|+.....   
T Consensus       135 g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~  214 (386)
T PRK07550        135 GIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGA  214 (386)
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCC
Confidence            9999888863       678899999889999999999999999986   789999999999999999998632110   


Q ss_pred             --CCC---C-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHH----H
Q 016612          185 --RPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR----V  254 (386)
Q Consensus       185 --~~~---~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  254 (386)
                        ...   . ....+++.|+||.+ |.+|+|+||+++++ ++.+.+...........+...+.++...+..+...    .
T Consensus       215 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~i~~~~-~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~  292 (386)
T PRK07550        215 PHDLFADPDWDDTLVHLYSFSKSY-ALTGHRVGAVVASP-ARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNR  292 (386)
T ss_pred             CcchhhCCCccccEEEEecchhhc-cCcccceEeeecCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHH
Confidence              111   1 13468899999999 55578999999874 45555555544444445555666555555443222    2


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhc-CcceeccCCCCcc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVK  332 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l-~~~gi~~~~G~~~  332 (386)
                      +.+.++.+.+.+.+++..              ++.+   . ...+.++++.++. .....++.+.+ +..|+.+.+|..+
T Consensus       293 ~~~~~~~~~l~~~L~~~~--------------~~~~---~-~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f  354 (386)
T PRK07550        293 AEIARRRDAFRAVFARLP--------------GWEL---L-ASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMF  354 (386)
T ss_pred             HHHHHHHHHHHHHHHhCC--------------Ccee---C-CCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhh
Confidence            223344444445554331              1111   1 1124566666653 33456676664 4568888877653


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCC
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED  369 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~  369 (386)
                      .                     ...++++||+++..+
T Consensus       355 ~---------------------~~~~~~iRis~~~~~  370 (386)
T PRK07550        355 G---------------------PGQEGYLRLAFANAD  370 (386)
T ss_pred             C---------------------CCCCCEEEEEeecCC
Confidence            1                     012568999998543

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.96  E-value=7e-27  Score=221.08  Aligned_cols=296  Identities=17%  Similarity=0.206  Sum_probs=196.0

Q ss_pred             hHHHHHHHHHhhcCC-C-ceEEeCcH-HHHHHHHHH-----hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKA-D-RALCFTSG-MAALAAVTH-----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~-~-~~i~~~~g-t~al~~~~~-----~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      ..+++++.+++++|. + +.+++++| |++++.+..     .+++||+|++++++|++....|...++..|++++.++.+
T Consensus        68 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  147 (406)
T PRK09295         68 KMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLN  147 (406)
T ss_pred             HHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC
Confidence            577888999999986 3 45555555 588875433     468999999999999988767777778889999988753


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |++++++++++++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+... +....++|++++|+||+
T Consensus       148 ~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~  227 (406)
T PRK09295        148 PDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL  227 (406)
T ss_pred             CCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhc
Confidence                 789999999999999999999999999999999999999999999999999887754 33356899999999996


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhh---------------------cCCC-CChhhHHHHHhcCCcHHH-HHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNA---------------------EGSG-LAPFDCWICLRGVKTMAL-RVEKQQ  258 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~  258 (386)
                      + ||.|  .|+++++++ +.+.+......                     ...+ .+......+..+++.+.. -.+...
T Consensus       228 ~-gp~G--~G~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~  303 (406)
T PRK09295        228 Y-GPTG--IGILYVKEA-LLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIA  303 (406)
T ss_pred             c-CCCC--cEEEEEchH-hHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHH
Confidence            6 7777  699998754 33322211100                     0111 111222222223322211 122233


Q ss_pred             HHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccc
Q 016612          259 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP  338 (386)
Q Consensus       259 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p  338 (386)
                      ++.+.+.+++.+          ++..++++.++.+  ..+.++++|.++... .+.+.+.+...||.++.|..+.   .+
T Consensus       304 ~~~~~l~~~l~~----------~l~~~~~~~~~~~--~~~~~iv~~~~~~~~-~~~~~~~L~~~gI~v~~g~~c~---~~  367 (406)
T PRK09295        304 EYEQNLMHYALS----------QLESVPDLTLYGP--QNRLGVIAFNLGKHH-AYDVGSFLDNYGIAVRTGHHCA---MP  367 (406)
T ss_pred             HHHHHHHHHHHH----------HHhcCCCEEEeCC--CCCceEEEEEECCcC-HHHHHHHHHhCCeEEeccccch---HH
Confidence            333334433332          1222233333322  124678999886532 4556667777888888776522   11


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                                 .....+. ++++|+|++..++++.++.+.++|++
T Consensus       368 -----------~~~~~~~-~~~iRiS~~~ynt~~did~l~~~l~~  400 (406)
T PRK09295        368 -----------LMAYYNV-PAMCRASLAMYNTHEEVDRLVAGLQR  400 (406)
T ss_pred             -----------HHHHHCC-CCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                       0111222 36799999987777777777766654

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.1e-26  Score=217.96  Aligned_cols=285  Identities=20%  Similarity=0.197  Sum_probs=188.8

Q ss_pred             HHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-------
Q 016612           57 RDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------  126 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------  126 (386)
                      ..++++.+++++|.+  +.++++++++++.. +.+++.+||.|++++|.|..+.    ..++..|.+++.++.       
T Consensus        68 ~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~  143 (380)
T PRK06225         68 FPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIID----NFASRFGAEVIEVPIYSEECNY  143 (380)
T ss_pred             hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHHhCceEEeeccccccCCc
Confidence            556777788887765  46666666799875 4557889999999999998764    455678888887764       


Q ss_pred             -CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC---CCcc-CCCCCCccEEEecc
Q 016612          127 -CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS---PVLS-RPLELGADIVMHSA  198 (386)
Q Consensus       127 -~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~---~~~~-~~~~~~~di~~~S~  198 (386)
                       .|++++++.++++++++++++|+||||.+++   +++|.++|+++|+++|+|++|..   +... .....+.++++.|+
T Consensus       144 ~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~  223 (380)
T PRK06225        144 KLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSF  223 (380)
T ss_pred             cCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeec
Confidence             2788999998889999999999999999975   88999999999999999999742   1111 11122567899999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHH-HHHHHHHHHHHHHHhhCCCc
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRV-EKQQDNAQKIAEFLASHPRV  274 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~l~~~l~~~~~~  274 (386)
                      ||++ |++|+|+||++++ +.+.+.+..... ...+.+...+.++...+..   +..+. ....++.+.+.+.+++.+  
T Consensus       224 SK~~-g~~G~RiG~i~~~-~~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--  298 (380)
T PRK06225        224 SKIF-GMAGLRIGAVVAT-PDLIEVVKSIVI-NDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIE--  298 (380)
T ss_pred             hhhc-CCccceeEEEecC-HHHHHHHHHHHh-cccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc--
Confidence            9999 6678999999987 456555554432 1233444444444333322   11111 112223333344444322  


Q ss_pred             ceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          275 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       275 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                                  +..+. .. +..++++++.+.. ......+.+.+...|+.+.+|..+.    +               
T Consensus       299 ------------~~~~~-~~-~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~----~---------------  345 (380)
T PRK06225        299 ------------GVFLP-VY-PSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTS----K---------------  345 (380)
T ss_pred             ------------CCccc-cC-CCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccC----c---------------
Confidence                        11110 01 2246678887743 2235667777777788877765311    0               


Q ss_pred             cCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          354 RGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       354 ~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                       ..+++++|+|++.  ++++++++.|++++++.
T Consensus       346 -~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~  377 (380)
T PRK06225        346 -RFGDRYIRVSFSIPREQVEVFCEEFPDVVETL  377 (380)
T ss_pred             -CCCCceEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence             1135689999985  68889999998888653

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.8e-26  Score=217.73  Aligned_cols=293  Identities=16%  Similarity=0.188  Sum_probs=194.0

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcH-HHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-t~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|.+. |.+ +|+++++++++.+|.+   +.+++++| ++|+.. +..++++||.|++++|.|+.+...    +...+
T Consensus        63 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~----~~~~~  138 (402)
T PRK06107         63 ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDM----VLAND  138 (402)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHH----HHHcC
Confidence            4568887 886 8999999999887763   34555555 589874 455789999999999999888633    33445


Q ss_pred             cEEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHc-CCEEEEeCCCCCCCc----
Q 016612          119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAH-GALLLVDNSIMSPVL----  183 (386)
Q Consensus       119 ~~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~-~~~li~D~a~~~~~~----  183 (386)
                      ...+.++.       .|++++++.+.++++++++++|+||||.+.+   +++|+++|+++ ++++|+||+|+.-.+    
T Consensus       139 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~  218 (402)
T PRK06107        139 GTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEP  218 (402)
T ss_pred             CEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCC
Confidence            55555553       2578899988888999999999999999986   67788889998 999999999863211    


Q ss_pred             -cCCC-----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHH
Q 016612          184 -SRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALR  253 (386)
Q Consensus       184 -~~~~-----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  253 (386)
                       ....     ..+..++++|+||.+ +.+|+|+||++++ +++.+.+...........+...+.++...+..    +...
T Consensus       219 ~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~-~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~  296 (402)
T PRK06107        219 TPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGP-ADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTES  296 (402)
T ss_pred             CCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecC-HHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHH
Confidence             1111     124679999999999 5568999999986 55666666666555555666666666554431    2222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--------H---HhHHHHH-hhcCc
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------L---ALSKHVV-ETTKY  321 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------~---~~~~~l~-~~l~~  321 (386)
                      .+.+.++.+.+.+.|++.              +++.+.  .+. .+.++|+.++.        .   .....+. ..++.
T Consensus       297 ~~~~~~~~~~~~~~L~~~--------------~g~~~~--~p~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  359 (402)
T PRK06107        297 VAVYKQRRDYALALLNAI--------------PGLSCL--VPD-GAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDS  359 (402)
T ss_pred             HHHHHHHHHHHHHHHhcC--------------CCCccc--CCC-cceEEeeecccccccccccccCCCCHHHHHHHHHHh
Confidence            333444444455555432              122221  111 23444555421        0   1223333 34455


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      .|+.+.+|..+.                       .++++|||++.  +++++.++.|.+.++++
T Consensus       360 ~gv~v~pg~~Fg-----------------------~~~~iRis~~~~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        360 AGVAVVQGTAYG-----------------------LSPYFRLSIATSLETLEEACARIERAVAAL  401 (402)
T ss_pred             CCEEEeCccccC-----------------------CCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence            678777776521                       14679999985  66777788888777653

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.96  E-value=1.5e-26  Score=218.28  Aligned_cols=323  Identities=15%  Similarity=0.177  Sum_probs=206.8

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCcccc--CC--CC-chHHHHHHHHHhhcCCCceEEeCcHHHHHHH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT--RS--GN-PTRDALESLLAKLDKADRALCFTSGMAALAA   85 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~--~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~   85 (386)
                      ...++++ +++|+|..++|.........  .. ....+|+  +.  |. +...++++.+++++|.++.+++++|++|+.+
T Consensus        38 ~~~i~~~-~~~~lg~~~~~~v~~~~~~~--~~-~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~  113 (393)
T TIGR01822        38 REVLNFC-ANNYLGLSSHPDLIQAAKDA--LD-EHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGG  113 (393)
T ss_pred             ceEEEee-CCCccccCCCHHHHHHHHHH--HH-HhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHH
Confidence            3578999 77888877666443211111  11 1112222  21  53 4789999999999999999999999988874


Q ss_pred             -HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCC------CceEEEEeCCCCCCcccccH
Q 016612           86 -VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        86 -~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l  158 (386)
                       +.+++++||+|+++++.|+++...+    +..+.+...+...|++++++.+++      ++++|++++++||+|.+.|+
T Consensus       114 ~~~~l~~~gd~vi~~~~~~~s~~~~~----~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l  189 (393)
T TIGR01822       114 LFETLLGAEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPL  189 (393)
T ss_pred             HHHHhCCCCCEEEEeccccHHHHHHH----HhcCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCH
Confidence             4567899999999999999886543    233344445556789999888763      78899999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCCCCCCccC---------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh
Q 016612          159 RKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (386)
Q Consensus       159 ~~i~~la~~~~~~li~D~a~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~  229 (386)
                      ++|.++|++||+++|+|++|+.+....         ....+.|++++|+||+++|   .|+||++++ +.+.+.+.....
T Consensus       190 ~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g---~r~G~~~~~-~~~~~~l~~~~~  265 (393)
T TIGR01822       190 DEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGG---ASGGFTTAR-KEVVELLRQRSR  265 (393)
T ss_pred             HHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhC---CCcEEEEeC-HHHHHHHHHhCc
Confidence            999999999999999999997654321         1112578999999999864   368999886 455554543221


Q ss_pred             --hcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE
Q 016612          230 --AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  304 (386)
Q Consensus       230 --~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~  304 (386)
                        ......++....++..+++.   .....+++.++.+.+.+.+++.         ++.      +.    ...++++.+
T Consensus       266 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~---------g~~------~~----~~~~~~~~i  326 (393)
T TIGR01822       266 PYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA---------GFD------IK----PADHPIIPV  326 (393)
T ss_pred             cceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc---------CCC------CC----CCCCCEEEE
Confidence              12222333333333333222   1223344455555555555432         111      11    112456777


Q ss_pred             EeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHH
Q 016612          305 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  380 (386)
Q Consensus       305 ~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~  380 (386)
                      .+.+......+.+.+...|+.+. +..+     |..              +.+...+|+|++.    ++++++++.|+++
T Consensus       327 ~~~~~~~~~~l~~~L~~~gI~v~-~~~~-----~~~--------------~~~~~~iRis~~~~~t~edi~~~~~~l~~~  386 (393)
T TIGR01822       327 MLYDAVLAQRFARRLLEEGIYVT-GFFY-----PVV--------------PKGQARIRVQISAAHTEEQLDRAVEAFTRI  386 (393)
T ss_pred             EeCCHHHHHHHHHHHHHCCeeEe-eeCC-----CCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            66554456677777777787665 3221     100              0123459999864    6777777777776


Q ss_pred             HhcC
Q 016612          381 LRTG  384 (386)
Q Consensus       381 l~~~  384 (386)
                      +++.
T Consensus       387 ~~~~  390 (393)
T TIGR01822       387 GREL  390 (393)
T ss_pred             HHHh
Confidence            6554

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.96  E-value=2.7e-26  Score=216.65  Aligned_cols=291  Identities=18%  Similarity=0.140  Sum_probs=186.2

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ..|.+. |.+ +++++.+.+....+.    ++.++++++++++.+ +.+++++||+|++++|+|+.+.    ..++..|.
T Consensus        67 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~  142 (403)
T TIGR01265        67 NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYD----TRAAFSGL  142 (403)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCC
Confidence            457655 655 567777666654332    356666666799874 4557799999999999998774    45567888


Q ss_pred             EEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----
Q 016612          120 VVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----  184 (386)
Q Consensus       120 ~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-----  184 (386)
                      +++.++.       .|++++++.++++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+.     
T Consensus       143 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~  222 (403)
T TIGR01265       143 EVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFI  222 (403)
T ss_pred             EEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCcc
Confidence            8887764       2688999988889999999999999999986   889999999999999999998743221     


Q ss_pred             CCC---CCCccEEEeccccccccCCCceEEEEEEcCh-h-----HHHHHHHhhhhcCCCCChhhHHHHHhcCC-----cH
Q 016612          185 RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGE-R-----LAKELYFLQNAEGSGLAPFDCWICLRGVK-----TM  250 (386)
Q Consensus       185 ~~~---~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  250 (386)
                      ...   .....++++|+||.++ .+|+|+||+++.++ .     +.+.+..... ...+.+...+.++...+.     .+
T Consensus       223 ~~~~~~~~~~vi~~~S~SK~~~-~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~  300 (403)
T TIGR01265       223 PMASFASIVPVLSLGGISKRWV-VPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENTPQEFF  300 (403)
T ss_pred             chhhhccCCcEEEEeecccccC-CCcceEEEEEEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhChHHHH
Confidence            111   1124689999999984 45899999998532 2     2222222221 122344455544433332     12


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----HhHHHHHhh-cCccee
Q 016612          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVET-TKYFSI  324 (386)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-l~~~gi  324 (386)
                      ....+++.++.+.+.+.++..+              +..+.  . +..|.++++.++..     .....+.+. +...|+
T Consensus       301 ~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~--~-p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv  363 (403)
T TIGR01265       301 DGKISVLKSNAELCYEELKDIP--------------GLVCP--K-PEGAMYLMVKLELELFPEIKDDVDFCEKLVREESV  363 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC--------------Cceec--C-CCceeEEEEeccccccCCCCCHHHHHHHHHHhCCE
Confidence            2233344445555555554332              11110  1 22467777777432     124456555 356788


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      .+.+|..+.                       .++++|||++.  +.+++.++.|.+.+++
T Consensus       364 ~v~pg~~f~-----------------------~~~~iRis~~~~~~~l~~~l~~l~~~~~~  401 (403)
T TIGR01265       364 ICLPGSAFG-----------------------LPNWVRITITVPESMLEEACSRIKEFCER  401 (403)
T ss_pred             EEeCccccC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            887776521                       25679999985  4555666666666643

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.95  E-value=1.8e-26  Score=218.02  Aligned_cols=293  Identities=16%  Similarity=0.125  Sum_probs=187.8

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhc---CCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLD---KADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~---g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ...|.+. |.+ +++++.+++.+..   ..++.++++++++++. ++.+++++||+|++++|+|..+.    .+++..|+
T Consensus        66 ~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~----~~~~~~g~  141 (401)
T TIGR01264        66 YNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYE----TLAESMGI  141 (401)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHH----HHHHHcCC
Confidence            3567766 775 6777777776531   2234555555569987 45667899999999999998775    55667888


Q ss_pred             EEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----
Q 016612          120 VVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----  184 (386)
Q Consensus       120 ~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-----  184 (386)
                      +++.++.       .|++++++.++++++++++++|+||||.+.+   +++|+++|+++|++||+||+|..-.+.     
T Consensus       142 ~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~  221 (401)
T TIGR01264       142 EVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE  221 (401)
T ss_pred             EEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc
Confidence            8888764       2788999888888999999999999999985   888999999999999999998632211     


Q ss_pred             CC--C-CCCccEEEeccccccccCCCceEEEEEEcCh-----hHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----HH
Q 016612          185 RP--L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----RLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MA  251 (386)
Q Consensus       185 ~~--~-~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  251 (386)
                      ..  . .....+++.||||.+ +.+|+|+||++++++     .+.+.+..... ...+.+...+.++...+..     +.
T Consensus       222 ~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~  299 (401)
T TIGR01264       222 PLASLSSTVPILSCGGLAKRW-LVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFD  299 (401)
T ss_pred             cHHHcCCCCcEEEEccCcccC-CCccceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHH
Confidence            10  1 112368999999998 557899999998742     12222222221 1223344444444333321     12


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-----HHhHHHHHhhc-Ccceec
Q 016612          252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LALSKHVVETT-KYFSIT  325 (386)
Q Consensus       252 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l-~~~gi~  325 (386)
                      ...+.+.++.+.+.+.|++.              +++.+  .. +..|.++++.++.     .....++.+.+ ...|+.
T Consensus       300 ~~~~~~~~~r~~l~~~L~~~--------------~~~~~--~~-p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~  362 (401)
T TIGR01264       300 GTLSVLESNAMLCYGALAAV--------------PGLRP--VM-PSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVF  362 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhC--------------CCCcc--cC-CCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEE
Confidence            22233333444444444432              12111  11 2236677777632     11245565655 367888


Q ss_pred             cCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          326 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       326 ~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      +.+|..+.                       .++++|||++.  +++++.+++|.+.++++
T Consensus       363 v~pg~~f~-----------------------~~~~iRis~~~~~~~l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       363 CLPGSCFE-----------------------YPGFFRVVLTVPVVMMEEACSRIQEFCERH  400 (401)
T ss_pred             EeCchhcC-----------------------CCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            77776421                       24679999984  67778888888888753

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.95  E-value=4.3e-26  Score=215.79  Aligned_cols=292  Identities=14%  Similarity=0.134  Sum_probs=190.1

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcC----------CCceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhh
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDK----------ADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSR  112 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g----------~~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~  112 (386)
                      ...|.+. |.+ +|+++.+++.+.++          .++.++++++++++.. +..++++||+|+++.|+|+.+.    .
T Consensus        68 ~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~----~  143 (412)
T PTZ00433         68 CNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYE----T  143 (412)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHH----H
Confidence            4678877 776 78888888876432          2244445555689874 5557899999999999999885    5


Q ss_pred             hcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCC
Q 016612          113 VTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (386)
Q Consensus       113 ~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~  182 (386)
                      .++..|++++.++.+       |++++++.+++++++|++++|+||||.+.+   +++|.++|+++|++||+||+|....
T Consensus       144 ~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~  223 (412)
T PTZ00433        144 VCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMV  223 (412)
T ss_pred             HHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccc
Confidence            567788888888752       688999888888999999999999999875   7788999999999999999986322


Q ss_pred             cc-----CCCC---CCccEEEeccccccccCCCceEEEEEEcC-----hhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc
Q 016612          183 LS-----RPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKG-----ERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (386)
Q Consensus       183 ~~-----~~~~---~~~di~~~S~sK~~~g~~g~~~G~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (386)
                      +.     ....   ....+++.|+||.+ |.+|+|+||+++.+     +++.+.+...... ..+.+...+.++...+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~  301 (412)
T PTZ00433        224 FNGATFTSVADFDTTVPRVILGGTAKNL-VVPGWRLGWLLLVDPHGNGGDFLDGMKRLGML-VCGPCSVVQAALGEALLN  301 (412)
T ss_pred             cCCCCccchhhccCCCceEEEccchhhc-CCCCeeEEEEEEeCCcccHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhc
Confidence            21     1111   12468899999999 45689999999731     2344444443322 234555555554443321


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----HhHHHHHhhc
Q 016612          250 -----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVETT  319 (386)
Q Consensus       250 -----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l  319 (386)
                           +....+.+.++.+.+.+.|++.              .+..+.  . +..+.++++.++..     ....++.+.+
T Consensus       302 ~~~~~~~~~~~~~~~~r~~l~~~L~~~--------------~~~~~~--~-p~gg~f~~~~l~~~~~~~~~~~~~~~~~l  364 (412)
T PTZ00433        302 TPQEHLEQIVAKLEEGAMVLYNHIGEC--------------IGLSPT--M-PRGSMFLMSRLDLEKFRDIKSDVEFYEKL  364 (412)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcC--------------CCCccc--C-CCeeEEEEEEechhhcCCCCCHHHHHHHH
Confidence                 1222223333444444444322              111111  1 11255667676431     1245666666


Q ss_pred             C-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          320 K-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       320 ~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      . ..|+.+.+|..+.                       .++++||+++.  +++++.++.|.+++++
T Consensus       365 l~~~gV~v~pg~~f~-----------------------~~~~iRis~~~~~e~l~~al~~l~~~~~~  408 (412)
T PTZ00433        365 LEEENVQVLPGEIFH-----------------------MPGFTRLTISRPVEVLREAVERIKAFCER  408 (412)
T ss_pred             HHhcCEEEeCccccC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            4 4688877776521                       14679999985  5677777777777754

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.95  E-value=7.5e-26  Score=212.80  Aligned_cols=293  Identities=14%  Similarity=0.154  Sum_probs=191.0

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ..|.+. |.+ +++++.+++...+|.    + +.++++++++++.+ +..++++||+|++++|+|+++.    .+++..|
T Consensus        61 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g  136 (391)
T PRK07309         61 SHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYE----PIVNLVG  136 (391)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcC
Confidence            357766 766 788888888776664    2 45555555699874 5567899999999999999985    4556788


Q ss_pred             cEEEEeCCC------CHHHHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc--
Q 016612          119 VVVKRVNTC------DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--  184 (386)
Q Consensus       119 ~~~~~v~~~------d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~--  184 (386)
                      .+++.++.+      |+++++++++   ++++++++++|+||||.+++   +++|.++|++||+++|+|++|+...+.  
T Consensus       137 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~  216 (391)
T PRK07309        137 AEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE  216 (391)
T ss_pred             CEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC
Confidence            888888753      6788988876   36899999999999999985   889999999999999999998743221  


Q ss_pred             ---CCC--CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH----HHHHH
Q 016612          185 ---RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM----ALRVE  255 (386)
Q Consensus       185 ---~~~--~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  255 (386)
                         ...  ..+..+++.|+||.+ |.+|+|+||++++++ +.+.+...........+...+.++...++..    .....
T Consensus       217 ~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRvG~~v~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  294 (391)
T PRK07309        217 PHVSIAEYLPDQTILINGLSKSH-AMTGWRIGLIFAPAE-FTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKK  294 (391)
T ss_pred             CCCCHHHhccCCEEEEecChhhc-cCccceeEEEEeCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHH
Confidence               111  124569999999999 556899999998754 5554544433333344555555544444321    11123


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhh-cCcceeccCCCCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVET-TKYFSITVSFGSVK  332 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-l~~~gi~~~~G~~~  332 (386)
                      .+.++.+.+.+.+++..         +.      +.  . +..+.++++.++..  .....+.+. +...|+.+.+|..+
T Consensus       295 ~~~~~~~~~~~~l~~~~---------~~------~~--~-p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f  356 (391)
T PRK07309        295 EYIKRRDYIIEKMTDLG---------FK------II--K-PDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAF  356 (391)
T ss_pred             HHHHHHHHHHHHHHHCC---------Ce------ec--C-CCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhh
Confidence            33344444444444321         11      11  1 11234455565432  123444543 34567877777642


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      .                     ..++++|||+++.  +++++.++.|++++++.
T Consensus       357 ~---------------------~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~  389 (391)
T PRK07309        357 G---------------------PYGEGYVRLSYAASMETIKEAMKRLKEYMEEH  389 (391)
T ss_pred             C---------------------CCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence            1                     1135789999974  57777888888877653

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.95  E-value=6.1e-26  Score=217.58  Aligned_cols=290  Identities=14%  Similarity=0.133  Sum_probs=185.8

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcC----CC-ceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcc-c
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-K  116 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g----~~-~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~-~  116 (386)
                      ..|... |.+ +|+++.+++.+.+|    .+ +.|++++|+ +++. ++.++++|||.|++++|.|+.+..    .+. .
T Consensus        88 ~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~----~~~~~  163 (496)
T PLN02376         88 ANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDR----DLRWR  163 (496)
T ss_pred             hccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHH----HHHhh
Confidence            346666 776 89999999988766    33 456566665 8887 556689999999999999999863    233 5


Q ss_pred             CCcEEEEeCCC-------CHHHHHhhh------CCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          117 TGVVVKRVNTC-------DLDEVASAI------GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       117 ~g~~~~~v~~~-------d~~~l~~~~------~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      .|++++.++++       |++++++++      ..++++|++++|+||||.+++   +++|+++|+++|++||+||+|+.
T Consensus       164 ~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~  243 (496)
T PLN02376        164 TGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAA  243 (496)
T ss_pred             CCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccc
Confidence            78999998872       567776542      247899999999999999997   67789999999999999999874


Q ss_pred             CCcc-----CC--C----C-----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH
Q 016612          181 PVLS-----RP--L----E-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (386)
Q Consensus       181 ~~~~-----~~--~----~-----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (386)
                      ..+.     +.  .    +     .+..+++.|+||.+ |.+|+|+||+++.++.+.+........  ...+...+.++.
T Consensus       244 ~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~-glpGlRvG~li~~~~~l~~~~~~~~~~--~~vs~~~Q~a~~  320 (496)
T PLN02376        244 TVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM-GLPGFRVGIVYSFNDSVVSCARKMSSF--GLVSSQTQLMLA  320 (496)
T ss_pred             cccCCCCcccHHHhhccccccccCCCeEEEEEeccccC-CCCcceEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence            3221     10  0    0     01235689999999 556899999999767666544433322  234555666555


Q ss_pred             hcCCcHH---HH----HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-------H
Q 016612          245 RGVKTMA---LR----VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-------A  310 (386)
Q Consensus       245 ~~~~~~~---~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~  310 (386)
                      ..+..-.   ..    .+.+.+..+.+.+.|++.         ++...        . ...|.++|+.++..       +
T Consensus       321 ~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~---------gi~~~--------~-~~aG~flwi~l~~~~~~~~~~~  382 (496)
T PLN02376        321 SMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA---------DIACL--------T-SNAGLFAWMDLRHLLRDRNSFE  382 (496)
T ss_pred             HHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCccc--------C-CCceEEEEEEchhhhccCCchh
Confidence            5444311   11    112222233333333321         11111        1 12356677766421       1


Q ss_pred             hHHHHHhhcC-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHh
Q 016612          311 LSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALR  382 (386)
Q Consensus       311 ~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~  382 (386)
                      ...++.+.+. ..|+.+.+|..+.                     ...+++|||+++.   +.+++.+++|++++.
T Consensus       383 ~e~~l~~~ll~~~gV~v~pGs~F~---------------------~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~  437 (496)
T PLN02376        383 SEIELWHIIIDKVKLNVSPGSSFR---------------------CTEPGWFRICFANMDDDTLHVALGRIQDFVS  437 (496)
T ss_pred             HHHHHHHHHHHcCCEEEeCccccC---------------------CCCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence            1234444443 3588888876531                     0135789999984   556666777777664

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.95  E-value=2.7e-26  Score=216.15  Aligned_cols=292  Identities=20%  Similarity=0.230  Sum_probs=189.3

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCC----C--ceEEeCcHH-HHHHHH-HHhcCCCCE--EEecCCCCCcHHHHHhh
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKA----D--RALCFTSGM-AALAAV-THLLGTGEE--IVAGDDLYGGTDRLLSR  112 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~--~~i~~~~gt-~al~~~-~~~~~~g~~--Vlv~~~~~~~~~~~~~~  112 (386)
                      ....|.+. |.+ +|+++.+++.+.+|.    +  +.|++++|+ +++..+ ..+++|||.  |++++|.|+.+.    .
T Consensus        56 ~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~----~  131 (393)
T TIGR03538        56 GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYE----G  131 (393)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchH----H
Confidence            34668877 776 899999998877542    2  356666665 888754 557899986  999999998885    4


Q ss_pred             hcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCC
Q 016612          113 VTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (386)
Q Consensus       113 ~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~  182 (386)
                      .++..|.+++.++.+       |++++++.+.++++++++++|+||||.+++   +++|.++|+++|++||+||+|....
T Consensus       132 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~  211 (393)
T TIGR03538       132 AALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELY  211 (393)
T ss_pred             HHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcc
Confidence            566788898888752       678888888778999999999999999987   7889999999999999999986322


Q ss_pred             ccC---C---------C---CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC
Q 016612          183 LSR---P---------L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (386)
Q Consensus       183 ~~~---~---------~---~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (386)
                      +..   +         .   ..+..+++.|+||.+ +.+|+|+||++++ +.+.+.+...........+...+.++...+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~~~GlRvG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l  289 (393)
T TIGR03538       212 FDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS-NLPGLRSGFVAGD-AEILKAFLRYRTYHGCAMPIPTQLASIAAW  289 (393)
T ss_pred             cCCCCCCcCHHHhcccccccccccEEEEecchhhc-CCcccceEEEecC-HHHHHHHHHHHHhhccCcCHHHHHHHHHHh
Confidence            110   0         0   123569999999988 4568999999987 445555554444334445555555544433


Q ss_pred             Cc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhc-Ccce
Q 016612          248 KT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFS  323 (386)
Q Consensus       248 ~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g  323 (386)
                      ..   +....+.+.++.+.+.+.+++.          +.      +  .. ...|.++++.++.  ...++.+.+ +..|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~L~~~----------~~------~--~~-p~gg~f~~~~~~~--~~~~~~~~l~~~~g  348 (393)
T TIGR03538       290 NDEQHVRENRALYREKFAAVLEILGQV----------LD------L--EL-PDAGFYLWPKVPG--DDEAFARALYEEEN  348 (393)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHhh----------Cc------c--cC-CCeeEEEEEECCC--CHHHHHHHHHHHCC
Confidence            22   2222333444444444544432          00      0  01 2236677777761  234566554 3568


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHH
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLD  378 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~  378 (386)
                      +.+.+|..+......               .....+++|||++.  +.+++.+++|+
T Consensus       349 V~v~pg~~f~~~~~~---------------~~~~~~~~Ris~~~~~~~l~~~l~~l~  390 (393)
T TIGR03538       349 VTVLPGRFLAREAEG---------------VNPGEGRVRIALVAPLEECVEAAERIR  390 (393)
T ss_pred             EEEeCCccccccccC---------------CCCCCCEEEEEecCCHHHHHHHHHHHH
Confidence            888887753211000               00125789999975  33334444443

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK09148 aminotransferase; Validated

Probab=99.95  E-value=4e-26  Score=215.46  Aligned_cols=292  Identities=16%  Similarity=0.136  Sum_probs=185.4

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcH-HHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g-t~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +++++.+++.+.+|.    ++.|++++| ++++.. +..++++||.|++++|+|+.+.    ..++..
T Consensus        61 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~  136 (405)
T PRK09148         61 THRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHA----FGFIMA  136 (405)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccH----HHHHhc
Confidence            4678877 776 889999998876664    324556666 588875 4557899999999999999885    344567


Q ss_pred             CcEEEEeCCC----CHHHHHhhh---CCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc----
Q 016612          118 GVVVKRVNTC----DLDEVASAI---GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL----  183 (386)
Q Consensus       118 g~~~~~v~~~----d~~~l~~~~---~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~----  183 (386)
                      |.+++.++.+    .++++++.+   .++++++++++|+||||.+++   +++|.++|+++|++||+||+|....+    
T Consensus       137 g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~  216 (405)
T PRK09148        137 GGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNP  216 (405)
T ss_pred             CCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCC
Confidence            9999888763    233444443   368899999999999999997   47899999999999999999863221    


Q ss_pred             -cCCCC----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHH
Q 016612          184 -SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRV  254 (386)
Q Consensus       184 -~~~~~----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  254 (386)
                       .....    .+..+++.|+||.+ |.+|+|+||++++ +.+.+.+...+.....+.+...+.++...+..    +....
T Consensus       217 ~~s~~~~~~~~~~~i~~~SfSK~~-~~pGlR~G~~v~~-~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~  294 (405)
T PRK09148        217 PPSVLQVPGAKDVTVEFTSMSKTF-SMAGWRMGFAVGN-ERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMR  294 (405)
T ss_pred             CCChhhCCCccCcEEEEecccccc-CCcchheeeeeCC-HHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHH
Confidence             11111    23457899999999 5568999999986 55666666555443444445555444444432    12223


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH---HhHHHHHhhc-CcceeccCCCC
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---ALSKHVVETT-KYFSITVSFGS  330 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l-~~~gi~~~~G~  330 (386)
                      ..+.++.+.+.+.|++..         +.      +  .. +..|.++++.++..   ....++.+.+ ...|+.+.+|.
T Consensus       295 ~~~~~~r~~l~~~L~~~~---------~~------~--~~-p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~  356 (405)
T PRK09148        295 ELYKKRRDVLVESFGRAG---------WD------I--PP-PAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGV  356 (405)
T ss_pred             HHHHHHHHHHHHHHHHcC---------Cc------c--CC-CCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCch
Confidence            334444444555554321         11      0  01 12345677776431   1134454443 35688777776


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                      .+.                     ...++++||+++.  +...+.++.|.++++
T Consensus       357 ~f~---------------------~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~  389 (405)
T PRK09148        357 GFG---------------------EHGDGYVRIALVENEQRIRQAARNIKRFLS  389 (405)
T ss_pred             hhC---------------------CCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            521                     0125789999973  333334444454443

>PRK08363 alanine aminotransferase; Validated

Probab=99.95  E-value=2.9e-26  Score=216.27  Aligned_cols=294  Identities=17%  Similarity=0.155  Sum_probs=185.4

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC--C--ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~--~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|+.. |.+ +++++.+++.+.+|.  +  +.++++++++++.. +.+++++||.|++++|+|+.+.    ..++..|
T Consensus        63 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g  138 (398)
T PRK08363         63 HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYT----GLVKFYG  138 (398)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHHcC
Confidence            3467655 665 788888877766553  2  45555555689874 4567899999999999999885    4455677


Q ss_pred             cEEEEe-CC------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          119 VVVKRV-NT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       119 ~~~~~v-~~------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+++.+ +.      .|++++++.++++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|....+.    
T Consensus       139 ~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~  218 (398)
T PRK08363        139 GVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHV  218 (398)
T ss_pred             CEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCccc
Confidence            777666 22      2688899888889999999999999999987   889999999999999999998642221    


Q ss_pred             C---CCCCCccEEEeccccccccCCCceEEEEEE-cChhHHHHHHHhhhh---cCCCCChhhHHHHHhcCCc----HHHH
Q 016612          185 R---PLELGADIVMHSATKFIAGHSDVMAGVLAV-KGERLAKELYFLQNA---EGSGLAPFDCWICLRGVKT----MALR  253 (386)
Q Consensus       185 ~---~~~~~~di~~~S~sK~~~g~~g~~~G~i~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~  253 (386)
                      .   .......+++.|+||+++ .+|+|+||+++ .++.+.+.+......   .....+...+.++...+..    +...
T Consensus       219 ~~~~~~~~~~vi~~~SfSK~~~-~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~  297 (398)
T PRK08363        219 SPGSLTKDVPVIVMNGLSKVYF-ATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEY  297 (398)
T ss_pred             CHHHcCcCCcEEEEecchhccC-CccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHH
Confidence            0   111235788999999984 46899999998 334333333222111   1123444444444333321    2222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE-EeCC---HHhHHHHHhhcCcceeccCCC
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGS---LALSKHVVETTKYFSITVSFG  329 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~---~~~~~~l~~~l~~~gi~~~~G  329 (386)
                      .+.+.++.+.+.+.+++.              ++..+.    ...++++.| .++.   ....+.+.+.+...|+.+.+|
T Consensus       298 ~~~~~~~~~~l~~~L~~~--------------~~~~~~----~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g  359 (398)
T PRK08363        298 MKKLKERRDYIYKRLNEI--------------PGISTT----KPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHG  359 (398)
T ss_pred             HHHHHHHHHHHHHHHhcC--------------CCCEec----CCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCc
Confidence            333344444444444332              222211    223566655 5543   122233344456778887777


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      ..+.                     ..+++++|||++.  +++++.++.|++.+++
T Consensus       360 ~~f~---------------------~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        360 SGFG---------------------EYGAGHFRLVFLPPVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             hhhC---------------------CCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            6532                     1135789999973  5566777777777654

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.95  E-value=1.2e-26  Score=219.62  Aligned_cols=291  Identities=15%  Similarity=0.137  Sum_probs=180.0

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCC--C-ceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ....|.+. |.+ +|+++.+++.+..|.  + +.|++++|+ +++.++..++++||+|++++|+|+.+.    .+++..|
T Consensus        68 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~~~~gd~V~v~~P~Y~~~~----~~~~~~g  143 (409)
T PRK07590         68 TFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDIFGPDNTIAVTDPVYPVYV----DTNVMAG  143 (409)
T ss_pred             CccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcC
Confidence            44678766 776 788888887766554  2 566666665 888877778899999999999999986    4445666


Q ss_pred             cE-----------EEEeCCCCHHHHHhhh-CCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc
Q 016612          119 VV-----------VKRVNTCDLDEVASAI-GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (386)
Q Consensus       119 ~~-----------~~~v~~~d~~~l~~~~-~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~  183 (386)
                      .+           ++.++.+.-+.+...+ .+++++|++++|+||||.+++   +++|.++|+++|++||+||+|..-..
T Consensus       144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~  223 (409)
T PRK07590        144 RTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFIS  223 (409)
T ss_pred             CcccccccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhcc
Confidence            64           7777764211222222 268999999999999999986   67788899999999999999863211


Q ss_pred             c----CC-C--C--CCccEEEeccccccccCCCceEEEEEEcChhHHHH------------HHHhhhhcCCCCChhhHHH
Q 016612          184 S----RP-L--E--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE------------LYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       184 ~----~~-~--~--~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  242 (386)
                      .    .+ .  .  .+..++++|+||.+ |.+|+|+||++++++ +.+.            ............+...+.+
T Consensus       224 ~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~pGlRiG~~i~~~~-li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a  301 (409)
T PRK07590        224 DPSLPHSIYEIEGARECAIEFRSFSKTA-GFTGTRCAYTVVPKE-LKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRA  301 (409)
T ss_pred             CCCCCcchhhCCCcccceEEEecCcccc-CCcCceeEEEEcCHH-HhhhccccchhhhHHHHHHHHhhcccCcCHHHHHH
Confidence            1    11 1  1  13468899999999 556899999999754 4331            1111111112345555554


Q ss_pred             HHhcCCc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHh
Q 016612          243 CLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  317 (386)
Q Consensus       243 ~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~  317 (386)
                      +...+..     +....+.+.++.+.+.+.|++..         +      .+.  . ...+.++|+.+++.....++.+
T Consensus       302 ~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~---------~------~~~--~-~~g~~f~wi~~~~~~~~~~~~~  363 (409)
T PRK07590        302 AEAVYSPEGKAQIKELIDYYMENAKIIREGLESAG---------F------EVY--G-GVNAPYIWVKTPDGMSSWDFFD  363 (409)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC---------C------cee--c-CCcceEEEEECCCCCCHHHHHH
Confidence            4333321     12223334445555555555431         1      111  1 1135677888754323445555


Q ss_pred             hcC-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHH
Q 016612          318 TTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKA  380 (386)
Q Consensus       318 ~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~  380 (386)
                      .+. ..++.+.+|..+.                     ..+.+++|||+.  .+++++.++.|.++
T Consensus       364 ~l~~~~gv~v~pg~~f~---------------------~~~~~~iRi~~~~~~~~l~~~l~rl~~~  408 (409)
T PRK07590        364 KLLQEANVVGTPGSGFG---------------------PSGEGYFRLSAFGSRENVLEAMERIKKA  408 (409)
T ss_pred             HHHHHCCEEEeChhHhC---------------------CCCCCEEEEEccCCHHHHHHHHHHHHhh
Confidence            443 4577777765421                     012568999963  35666666666554

>PRK07179 hypothetical protein; Provisional

Probab=99.95  E-value=2.5e-26  Score=217.34  Aligned_cols=328  Identities=16%  Similarity=0.143  Sum_probs=216.3

Q ss_pred             CccceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC--CCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-
Q 016612            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (386)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-   84 (386)
                      ++...+++++ +|+|+|....|.+........+.........+..  +.+...++++.+++++|.++.+++++|++|+. 
T Consensus        51 ~~g~~~~~~~-~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~  129 (407)
T PRK07179         51 TPGPDAIILQ-SNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVG  129 (407)
T ss_pred             CCCCcEEEee-cCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence            4456688999 9999999987755422211110000111111222  34578999999999999998899999999886 


Q ss_pred             HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHH
Q 016612           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAE  163 (386)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~  163 (386)
                      ++.++..+||.|+++.+.|.+...    .++..|.+++.++..|++++++.+++ ++++|++++++||+|.+.|+++|.+
T Consensus       130 ~l~~l~~~g~~v~~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~  205 (407)
T PRK07179        130 LLQTIADPNTPVYIDFFAHMSLWE----GVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVD  205 (407)
T ss_pred             HHHHhCCCCCEEEEECCcCHHHHH----HHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHH
Confidence            556678899999999888877753    33456788888887899999999875 5889999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCCCCCCccC-------CC--CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh--cC
Q 016612          164 MAHAHGALLLVDNSIMSPVLSR-------PL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EG  232 (386)
Q Consensus       164 la~~~~~~li~D~a~~~~~~~~-------~~--~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--~~  232 (386)
                      +|+++|+++|+||+|+.+....       ..  ..+.|+++.|+||++++    ++|+++++ +.+.+.+......  .+
T Consensus       206 l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~----~~G~l~~~-~~~~~~~~~~~~~~~~~  280 (407)
T PRK07179        206 IAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG----RAGIITCP-RELAEYVPFVSYPAIFS  280 (407)
T ss_pred             HHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc----cCeEEEeC-HHHHHHHHHhCcCeeeC
Confidence            9999999999999998654321       11  12458999999999953    37999886 4455544433221  22


Q ss_pred             CCCChhhHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH
Q 016612          233 SGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  309 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~  309 (386)
                      ....+...+.+...+   .....+.++..++.+.+.+.|++..         +      .+     .+.++++++.++..
T Consensus       281 ~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~g---------~------~v-----~~~~~i~~l~~~~~  340 (407)
T PRK07179        281 STLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSELG---------Y------NI-----RSESQIIALETGSE  340 (407)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------C------CC-----CCCCCEEEEEeCCH
Confidence            232333332222222   2223344555556666666665431         1      11     12357888887654


Q ss_pred             HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcCC
Q 016612          310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTGP  385 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~~  385 (386)
                      .....+.+.+..+|+..+   .   ++.|..              ....+++||+++.    ++++++++.|++++++.+
T Consensus       341 ~~~~~~~~~L~~~GI~~~---~---~~~p~~--------------~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~  400 (407)
T PRK07179        341 RNTEVLRDALEERNVFGA---V---FCAPAT--------------PKNRNLIRLSLNADLTASDLDRVLEVCREARDEVD  400 (407)
T ss_pred             HHHHHHHHHHHHCCceEe---e---ecCCCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhhC
Confidence            446677777777777522   1   112211              0124679999974    777777777877777654

>PRK07683 aminotransferase A; Validated

Probab=99.95  E-value=5.5e-26  Score=213.42  Aligned_cols=291  Identities=19%  Similarity=0.219  Sum_probs=188.4

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcHHHHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~gt~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +++++.+++.+.+|.    + +.++++++++|+..+ ..++++||.|+++.|+|+.+.    .+++..
T Consensus        58 ~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~  133 (387)
T PRK07683         58 YTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYE----PIIRLC  133 (387)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchH----HHHHHc
Confidence            4567765 766 788888888766553    2 344444456998754 557899999999999999885    444567


Q ss_pred             CcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       118 g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      |.+++.++.+      |.+++++.++++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+.    
T Consensus       134 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~  213 (387)
T PRK07683        134 GAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHT  213 (387)
T ss_pred             CCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcC
Confidence            8999888764      568899988888999999999999999975   788999999999999999998743321    


Q ss_pred             CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHHH
Q 016612          185 RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEK  256 (386)
Q Consensus       185 ~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  256 (386)
                      ...    ..+.++++.|+||.+ |.+|+|+||+++++ .+.+.+...........+...+.++...+..    .......
T Consensus       214 ~~~~~~~~~~~vi~~~s~SK~~-~~pGlRiG~i~~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  291 (387)
T PRK07683        214 SIAHFPEMREKTIVINGLSKSH-SMTGWRIGFLFAPS-YLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQ  291 (387)
T ss_pred             ChhhccCCcCCeEEEeeccccc-cCccceeEEEEcCH-HHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHH
Confidence            111    124679999999999 54589999999874 4555444433332233344444444333321    2222333


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE-eCC-HHhHHHHH-hhcCcceeccCCCCccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGS-LALSKHVV-ETTKYFSITVSFGSVKS  333 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~-~~~~~~l~-~~l~~~gi~~~~G~~~~  333 (386)
                      +.++.+.+.+.+.+.         ++.      ++    ...++++.|. ++. ......+. +.+...|+.+.+|..+.
T Consensus       292 ~~~~~~~~~~~l~~~---------~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~  352 (387)
T PRK07683        292 YKKRRDYVYNRLISM---------GLD------VE----KPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFS  352 (387)
T ss_pred             HHHHHHHHHHHHHHc---------CCc------cc----CCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhC
Confidence            444555555555432         111      11    1234555544 432 11233344 33566788877776532


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                                           +.+++++||+++.  +++.+.+++|.+.++
T Consensus       353 ---------------------~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~  382 (387)
T PRK07683        353 ---------------------EYGEGYVRLSYAYSIETLKEGLDRLEAFLQ  382 (387)
T ss_pred             ---------------------CCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence                                 1135789999984  555666777776664

>PRK09265 aminotransferase AlaT; Validated

Probab=99.95  E-value=4.3e-26  Score=215.51  Aligned_cols=295  Identities=16%  Similarity=0.150  Sum_probs=187.1

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhc--CCC-ceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLD--KAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~--g~~-~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|+.. |.+ +++++.+++....  +.+ +.|++++|+ +++. ++.+++++||+|++++|+|+.+..    .++..|
T Consensus        65 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g  140 (404)
T PRK09265         65 AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTA----AVSLSG  140 (404)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHH----HHHHcC
Confidence            3568776 765 7777777775432  333 456666665 7786 455678999999999999998863    344567


Q ss_pred             cEEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       119 ~~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+++.++.       .|++++++.+++++++|++++|+||||.+.+   +++|.++|+++|++||+||+|..-.+.    
T Consensus       141 ~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~  220 (404)
T PRK09265        141 GKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVH  220 (404)
T ss_pred             CEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCc
Confidence            77766543       2688999988888999999999999999998   889999999999999999998632211    


Q ss_pred             -CC---CCCCccEEEeccccccccCCCceEEEEEEc-Chh----HHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH---H
Q 016612          185 -RP---LELGADIVMHSATKFIAGHSDVMAGVLAVK-GER----LAKELYFLQNAEGSGLAPFDCWICLRGVKTMA---L  252 (386)
Q Consensus       185 -~~---~~~~~di~~~S~sK~~~g~~g~~~G~i~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  252 (386)
                       ..   ......+++.|+||.+ +.+|+|+||++.+ ++.    +.+.+.... ......+...+.++...+....   .
T Consensus       221 ~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~  298 (404)
T PRK09265        221 ISIASLAPDLLCVTFNGLSKAY-RVAGFRVGWMVLSGPKKHAKGYIEGLDMLA-SMRLCANVPAQHAIQTALGGYQSINE  298 (404)
T ss_pred             CCHHHcCCCceEEEEecchhhc-cCcccceEEEEEeCchHHHHHHHHHHHHHh-ccccCCCcHHHHHHHHHhcCchhHHH
Confidence             11   1112457889999999 4568999999974 332    222222221 1223444555555544443211   1


Q ss_pred             HH---HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----HhHHHHHhhcCccee
Q 016612          253 RV---EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVETTKYFSI  324 (386)
Q Consensus       253 ~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~gi  324 (386)
                      ..   +...++.+.+.+.|++.              +++.+.  .+ ..+.++++.++..     ...+.+.+.+...|+
T Consensus       299 ~~~~~~~~~~~r~~~~~~L~~~--------------~~~~~~--~p-~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv  361 (404)
T PRK09265        299 LILPGGRLYEQRDRAWELLNAI--------------PGVSCV--KP-KGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKV  361 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--------------CCCccc--CC-CcceEEEEEecccccCCCCHHHHHHHHHHhCCE
Confidence            11   12233333333444322              222211  11 2245666666432     234456667777788


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      .+.+|..+.                     ...++++|++++.  +.+++.+++|+++++..
T Consensus       362 ~v~pg~~F~---------------------~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~~  402 (404)
T PRK09265        362 LLVQGTGFN---------------------WPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGY  402 (404)
T ss_pred             EEECchhhC---------------------CCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence            877776521                     0135789999963  67888888888888653

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=1.4e-26  Score=213.01  Aligned_cols=276  Identities=14%  Similarity=0.152  Sum_probs=181.7

Q ss_pred             CCCchHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           52 SGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        52 ~g~~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      ++++...++++.+++++|.+ ..|++++|+ +++..+..++++|+ |++++|+|+.+.    .+++..|.+++.++.+  
T Consensus        37 Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~~~~~-vv~~~P~y~~y~----~~~~~~G~~v~~vp~~~~  111 (332)
T PRK06425         37 YPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYINVGN-IIIVEPNFNEYK----GYAFTHGIRISALPFNLI  111 (332)
T ss_pred             CcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhCCCc-EEEeCCChHHHH----HHHHHcCCeEEEEeCCcc
Confidence            34456889999999999887 556666665 88886666778875 666699998885    6677889999999874  


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---C----CCCCCccEEE
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---R----PLELGADIVM  195 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---~----~~~~~~di~~  195 (386)
                        |.+.++   ..+++++++++||||||.+.+   +++|.++|+++|++||+||+|..-...   .    ....+..+++
T Consensus       112 ~~~~~~l~---~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~  188 (332)
T PRK06425        112 NNNPEILN---NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIG  188 (332)
T ss_pred             cCcHHHHh---hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEE
Confidence              333333   248899999999999999987   677888889999999999998633221   0    0122568999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhc-CCcH-HHHHHHHHHHHHHHHHHHhhCCC
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG-VKTM-ALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      +||||.+ |.+|+|+||++++ +++.+.+......  ...+.....++... ...+ ....+.+.++.+.+.+.|++.. 
T Consensus       189 ~SfSK~~-~l~GlRiGy~v~~-~~li~~l~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-  263 (332)
T PRK06425        189 RSLTKIL-GIPSLRIGYIATD-DYNMKISRKITEP--WSVCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAMG-  263 (332)
T ss_pred             eecHHhc-CCchhhheeeecC-HHHHHHHHHcCCC--CccCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence            9999999 6568999999987 4465555443221  22233222222111 1111 1122333344444444444321 


Q ss_pred             cceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          274 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       274 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                                    ..++   ....++++++.++   ....+.+.+...|+.+.+|..+.                    
T Consensus       264 --------------~~~~---~~~~g~f~~~~~~---~~~~~~~~l~~~gi~v~~~~~f~--------------------  303 (332)
T PRK06425        264 --------------FRAA---GDPSANFITFMIP---DAHDFYSYLLKNGILVRLLDDYE--------------------  303 (332)
T ss_pred             --------------CEEC---CCCCceEEEEEcC---CHHHHHHHHHHCCeEEEECCCCC--------------------
Confidence                          1111   0124678888875   24566667666788887776421                    


Q ss_pred             cCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 016612          354 RGLTEDLVRISVGI-EDVNDLISDLDKAL  381 (386)
Q Consensus       354 ~~~~~~~iRis~~~-~~~~~~i~~l~~~l  381 (386)
                       +.+++++|||++. ++++.+++.|++.+
T Consensus       304 -~~~~~~iRis~~~~~~~~~l~~al~~~~  331 (332)
T PRK06425        304 -CLGEQYIRIAIRRRSFNIKLVNALRNFL  331 (332)
T ss_pred             -CCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence             1135789999974 88999999988765

>PRK08175 aminotransferase; Validated

Probab=99.95  E-value=5.1e-26  Score=214.32  Aligned_cols=296  Identities=16%  Similarity=0.138  Sum_probs=194.6

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHH-HHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt-~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ....|.+. |.+ +++++.+++.+.+|.    ++.+++++|+ ++++. +..+++|||+|++++|+|+.+..    .++.
T Consensus        59 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~----~~~~  134 (395)
T PRK08175         59 DTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIY----GAVI  134 (395)
T ss_pred             CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHH----HHHH
Confidence            34678877 876 899999998876554    2246666665 88874 45678999999999999998753    3456


Q ss_pred             CCcEEEEeCCC----CHHHHHhhhC---CCceEEEEeCCCCCCcccccH---HHHHHHHHHcCCEEEEeCCCCCCCc---
Q 016612          117 TGVVVKRVNTC----DLDEVASAIG---PWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVL---  183 (386)
Q Consensus       117 ~g~~~~~v~~~----d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~l---~~i~~la~~~~~~li~D~a~~~~~~---  183 (386)
                      .|.+++.++.+    +.+++++.++   ++++++++++|+||||.+.+.   ++|.++|+++|+++|+||+|....+   
T Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~  214 (395)
T PRK08175        135 AGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGW  214 (395)
T ss_pred             cCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCC
Confidence            78888888764    4677887775   478999999999999999975   7899999999999999999853221   


Q ss_pred             --cCCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHH
Q 016612          184 --SRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALR  253 (386)
Q Consensus       184 --~~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  253 (386)
                        ....    ..+..+++.|+||.+ |.+|+|+||++++ +++.+.+.........+.+...+.++...+..    +...
T Consensus       215 ~~~~~~~~~~~~~~~i~~~S~SK~~-g~pGlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  292 (395)
T PRK08175        215 KAPSIMQVPGAKDVAVEFFTLSKSY-NMAGWRIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDI  292 (395)
T ss_pred             CCcchhcCCCcccCEEEEeeccccc-cCcchhheeeeCC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHH
Confidence              1111    123467899999999 4568999999986 55666665555433333334344333333322    2222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHH---hHHHHHhhc-CcceeccCCC
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA---LSKHVVETT-KYFSITVSFG  329 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l-~~~gi~~~~G  329 (386)
                      .+.+.++.+.+.+.|++..         +      .+.  . ...|.++++.+++..   ....+.+.+ +..|+.+.+|
T Consensus       293 ~~~~~~~~~~~~~~L~~~~---------~------~~~--~-p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~  354 (395)
T PRK08175        293 AEQYKRRRDVLVKGLHEAG---------W------MVE--M-PKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPG  354 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcC---------C------ccc--C-CCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCc
Confidence            3334444445555555321         1      110  1 223678888875431   245555543 4568877776


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcCC
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTGP  385 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~~  385 (386)
                      ..+.                     ..+++++||+++.  +.+.+.++.|.+.+++.+
T Consensus       355 ~~f~---------------------~~~~~~lRis~~~~~~~~~~al~~l~~~l~~~~  391 (395)
T PRK08175        355 IGFG---------------------DYGDTHVRFALIENRDRIRQAIRGIKAMFRADG  391 (395)
T ss_pred             hhhC---------------------cCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence            5421                     1135689999973  556667777777776643

>PRK09082 methionine aminotransferase; Validated

Probab=99.95  E-value=4.1e-26  Score=214.31  Aligned_cols=279  Identities=18%  Similarity=0.134  Sum_probs=185.1

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCc-HHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~-gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +++++.+++.+.+|.+    +.+++++ +++++. ++..++++||+|++++|.|+.+.    ..++..
T Consensus        60 ~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~  135 (386)
T PRK09082         60 HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYA----PAIELA  135 (386)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhH----HHHHHc
Confidence            4567766 776 7999999999887763    2455554 568886 55667899999999999999885    444567


Q ss_pred             CcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       118 g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      |.+++.++.+      |++++++.++++++++++++|+||||.++   ++++|.++|+++|+++|+|++|+...+.    
T Consensus       136 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~  215 (386)
T PRK09082        136 GGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGH  215 (386)
T ss_pred             CCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCC
Confidence            8888888763      78899999988999999999999999986   5888999999999999999998632221    


Q ss_pred             -CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC----cHHHHHH
Q 016612          185 -RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVE  255 (386)
Q Consensus       185 -~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  255 (386)
                       ...    ..+.++++.|+||.+ |.+|+|+||++++ +++.+.+...........+...+.++...+.    .......
T Consensus       216 ~s~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~iv~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  293 (386)
T PRK09082        216 ASVLRHPELRERAFVVSSFGKTY-HVTGWKVGYCVAP-AALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPA  293 (386)
T ss_pred             CChhhCcCccCcEEEEeechhhc-cchhhhhhhhhCC-HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHH
Confidence             111    124679999999999 5568999999987 5566656555543334445555544433332    1122233


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhc-CcceeccCCCCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETT-KYFSITVSFGSVK  332 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l-~~~gi~~~~G~~~  332 (386)
                      .+.++.+.+.+.|++.         ++.      +.  . ...+.++++.+++  ......+.+.+ ...++.+.+|..+
T Consensus       294 ~~~~~~~~~~~~L~~~---------~~~------~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f  355 (386)
T PRK09082        294 FYQAKRDRFRAALANS---------RFK------LL--P-CEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVF  355 (386)
T ss_pred             HHHHHHHHHHHHHHhC---------CCc------cc--C-CCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHh
Confidence            3445555555555532         111      11  1 1123445556642  12244555543 5567777776642


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEecc
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  367 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  367 (386)
                      ...                   +...+++|||++.
T Consensus       356 ~~~-------------------~~~~~~~Ri~~~~  371 (386)
T PRK09082        356 YAD-------------------PFPHRLVRLCFAK  371 (386)
T ss_pred             CCC-------------------CCCCCEEEEEecC
Confidence            100                   1135789999986

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=1.1e-26  Score=216.68  Aligned_cols=313  Identities=18%  Similarity=0.252  Sum_probs=201.4

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEe-CcHH-HHHHHH-H
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCF-TSGM-AALAAV-T   87 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~-~~gt-~al~~~-~   87 (386)
                      .+++++.+.+++|.  +|... ..+.. ...  ....|...   ...++++.+++++|.+ +.+++ ++|+ +++..+ .
T Consensus        35 ~~i~l~~~~~~~~~--~~~~~-~~~~~-~~~--~~~~y~~~---~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~  105 (361)
T PRK00950         35 SIIKLGSNENPLGP--SPKAV-EAIEK-ELS--KIHRYPEP---DAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMR  105 (361)
T ss_pred             ceEEccCCCCCCCC--CHHHH-HHHHH-HHH--hhcCCCCC---CHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHH
Confidence            77889855566773  22221 11111 011  11234332   3477888888888875 44444 7786 667654 4


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~  162 (386)
                      .++++||.|++++|.|+.+.    ..++..|++++.++.+     |++++++.++++++++++++|+||||.+.+.+++.
T Consensus       106 ~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~  181 (361)
T PRK00950        106 TFIDPGDEVIIPTPTFSYYE----ISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIR  181 (361)
T ss_pred             HhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHH
Confidence            56789999999999997764    4456788988888642     68899998888899999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCCCCCCccC--C--CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChh
Q 016612          163 EMAHAHGALLLVDNSIMSPVLSR--P--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (386)
Q Consensus       163 ~la~~~~~~li~D~a~~~~~~~~--~--~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~  238 (386)
                      ++|+++|+++|+|++|.......  .  ...+..++++|+||.+ |.+|+|+||++++ +.+.+.+......  ...+..
T Consensus       182 ~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~-~~~~~~~~~~~~~--~~~~~~  257 (361)
T PRK00950        182 KILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVF-GLAGLRIGYGFVP-EWLIDYYMRAKTP--FSLTRL  257 (361)
T ss_pred             HHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhh-cCchhhcchhcCC-HHHHHHHHHhcCC--CCCCHH
Confidence            99999999999999986322111  1  1224568899999999 5568999999986 4455545444332  234455


Q ss_pred             hHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhh
Q 016612          239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET  318 (386)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  318 (386)
                      .+..+...+... ...++..+..+...+.+.+.          +.    ..++    ...++++++.++. ....++.+.
T Consensus       258 ~~~~a~~~l~~~-~~~~~~~~~~~~~r~~l~~~----------l~----~~~~----~~~~~~i~~~~~~-~~~~~~~~~  317 (361)
T PRK00950        258 SQAAAIAALSDK-EYIEKSIEHGIKSREYLYNE----------LP----FKVY----PSEANFVLVDVTP-MTAKEFCEE  317 (361)
T ss_pred             HHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHhh----------cC----eeEC----CCcceEEEEECCC-CCHHHHHHH
Confidence            555555555432 12233333333333433322          11    0111    1245778887743 235667777


Q ss_pred             cCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 016612          319 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  382 (386)
Q Consensus       319 l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  382 (386)
                      +...|+.+.+|..+.                     +.+++++|+|++. ++++++++.|+++++
T Consensus       318 l~~~gv~v~~~~~f~---------------------~~~~~~lRis~~~~~~~~~l~~~L~~il~  361 (361)
T PRK00950        318 LLKRGVIVRDCTSFR---------------------GLGDYYIRVSIGTFEENERFLEILKEIVE  361 (361)
T ss_pred             HHHCCEEEeeCCccC---------------------CCCCCeEEEECCCHHHHHHHHHHHHHHhC
Confidence            767788777654311                     1135789999974 667788888877653

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=1.7e-26  Score=215.77  Aligned_cols=276  Identities=17%  Similarity=0.228  Sum_probs=190.5

Q ss_pred             HHHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----CHH
Q 016612           58 DALESLLAKLDKAD-RALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLD  130 (386)
Q Consensus        58 ~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~  130 (386)
                      .++++.++++++.+ +.|++++|+ +++..+ ..++++||.|++++|.|..+.    ..++..|.+++.++.+    |++
T Consensus        70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~  145 (367)
T PRK02731         70 FELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYP----IAAQAVGAKPVEVPAKDYGHDLD  145 (367)
T ss_pred             HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHH----HHHHHcCCeEEEecccCCCCCHH
Confidence            57888888888876 566777776 777754 557899999999999997664    3345688999888764    789


Q ss_pred             HHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCccC-------CC-CCCccEEEecccc
Q 016612          131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSR-------PL-ELGADIVMHSATK  200 (386)
Q Consensus       131 ~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~~-------~~-~~~~di~~~S~sK  200 (386)
                      ++++.+++++++|++++|+||||.+.+.+++.++++..  |+++|+|++|.......       .. .....++++|+||
T Consensus       146 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  225 (367)
T PRK02731        146 AMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSK  225 (367)
T ss_pred             HHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehH
Confidence            99999988999999999999999999999999998875  89999999986332211       01 1245788999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH---HHHHHHHHHHHHHHHHHhhCCCcceE
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASHPRVKKV  277 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~  277 (386)
                      .+ |.+|+|+||+++++ ++.+.+......  ...+...+.++...++...   .......++.+.+.+.+++.      
T Consensus       226 ~~-g~~G~RiG~l~~~~-~~~~~l~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------  295 (367)
T PRK02731        226 AY-GLAGLRVGYGIAPP-EIIDALNRVRQP--FNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL------  295 (367)
T ss_pred             hh-cCcccceeeeeCCH-HHHHHHHHccCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC------
Confidence            98 56689999999874 455555443322  2345555666555554321   11222223333333444332      


Q ss_pred             ecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCC
Q 016612          278 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  357 (386)
Q Consensus       278 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~  357 (386)
                         ++      .+.    ...++++++.+++.....++.+.+..+|+.++++..+                      + .
T Consensus       296 ---g~------~~~----~~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~----------------------~-~  339 (367)
T PRK02731        296 ---GL------EYI----PSVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGY----------------------G-L  339 (367)
T ss_pred             ---CC------ccC----CCCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCC----------------------C-C
Confidence               11      111    1246888988854444667777777788887765431                      1 1


Q ss_pred             CCeEEEEecc-CChHHHHHHHHHHHhc
Q 016612          358 EDLVRISVGI-EDVNDLISDLDKALRT  383 (386)
Q Consensus       358 ~~~iRis~~~-~~~~~~i~~l~~~l~~  383 (386)
                      +++||+|++. ++++.+++.|++++++
T Consensus       340 ~~~iRis~~~~~e~~~l~~aL~~~~~~  366 (367)
T PRK02731        340 PNALRITIGTEEENRRFLAALKEFLAA  366 (367)
T ss_pred             CCeEEEecCCHHHHHHHHHHHHHHHhc
Confidence            4679999974 7888888888888765

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.95  E-value=4.4e-26  Score=215.44  Aligned_cols=295  Identities=21%  Similarity=0.264  Sum_probs=191.2

Q ss_pred             hHHHHHHHHHhhcCC-C-ceEEeCc-HHHHHHHHHH-h----cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKA-D-RALCFTS-GMAALAAVTH-L----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~-~-~~i~~~~-gt~al~~~~~-~----~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      ..+++++.+++++|. + +.|++++ +|++++.+.. +    +++||+|++++++|++....|...++..|++++.++.+
T Consensus        64 ~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  143 (401)
T PRK10874         64 RYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLG  143 (401)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecC
Confidence            577889999999998 4 4555554 4699875543 4    47999999999999987666677778899999988753


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |++++++.++++|++|++++++||||.+.|+++|.++|+++|+++++|++|+.+... +....+.|++++|+||+
T Consensus       144 ~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~  223 (401)
T PRK10874        144 ADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKL  223 (401)
T ss_pred             CCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccc
Confidence                 789999999999999999999999999999999999999999999999999876653 33345799999999997


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhh--------------------cCCCCCh-hhHHHHHhcCCcHHHH-HHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNA--------------------EGSGLAP-FDCWICLRGVKTMALR-VEKQQD  259 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--------------------~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~  259 (386)
                      + ||+|  .|+++++++ +.+.+..+...                    ...+..+ .....+..+++.+... ..+..+
T Consensus       224 ~-gp~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~  299 (401)
T PRK10874        224 Y-GPTG--IGVLYGKSE-LLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAES  299 (401)
T ss_pred             c-CCCc--cEEEEEchH-HHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            6 6777  599998754 43333221100                    0011111 1222222333222111 111223


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~  339 (386)
                      +...+.+++.+          ++..+++..++.   ...+++++|.+++.. .+++.+.|...|+.++.|..+.   .+ 
T Consensus       300 ~~~~l~~~l~~----------~l~~~~g~~~~~---~~~~~i~~~~~~~~~-~~~~~~~L~~~gI~v~~g~~~~---~~-  361 (401)
T PRK10874        300 WSRSLATLAED----------ALAKLPGFRSFR---CQDSSLLAFDFAGVH-HSDLVTLLAEYGIALRAGQHCA---QP-  361 (401)
T ss_pred             HHHHHHHHHHH----------HHhcCCCEEEeC---CCCCcEEEEEECCcC-HHHHHHHHHHCCcEEeccccch---HH-
Confidence            33333333322          122222322221   113568888876533 4567777777899888776422   00 


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                                .....+. .++||+|++.    ++++.+++.|+++++.
T Consensus       362 ----------~~~~~g~-~~~iRiS~~~~nt~edid~ll~al~~~~~~  398 (401)
T PRK10874        362 ----------LLAALGV-TGTLRASFAPYNTQSDVDALVNAVDRALEL  398 (401)
T ss_pred             ----------HHHHhCC-CCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence                      0111121 4689999985    5566666666555544

>PRK05839 hypothetical protein; Provisional

Probab=99.95  E-value=4.5e-26  Score=212.94  Aligned_cols=289  Identities=15%  Similarity=0.094  Sum_probs=179.7

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCC--C-ceEEeCcHH-HHHHHHHH-hc--CCCCEEEecCCCCCcHHHHHhhhcc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-AALAAVTH-LL--GTGEEIVAGDDLYGGTDRLLSRVTP  115 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~gt-~al~~~~~-~~--~~g~~Vlv~~~~~~~~~~~~~~~~~  115 (386)
                      ....|++. |.+ +++++.+++++.+|.  + +.|++++|+ +++..+.. ++  ++||.|+++.|+|+.+.    ..++
T Consensus        52 ~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~  127 (374)
T PRK05839         52 LLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYE----GAAI  127 (374)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhH----HHHH
Confidence            35678877 875 899999999988773  2 566666665 88875544 43  57999999999999886    4456


Q ss_pred             cCCcEEEEeCCC-----CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCC----c
Q 016612          116 KTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV----L  183 (386)
Q Consensus       116 ~~g~~~~~v~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~----~  183 (386)
                      ..|++++.++.+     +++..+..+ ++++++++++||||||.+++   +++|+++|+++|++||+||+|..-.    .
T Consensus       128 ~~g~~v~~v~~~~~~~~~~d~~~~~~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~  206 (374)
T PRK05839        128 ASRAKVLLMPLTKENDFTPSLNEKEL-QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPP  206 (374)
T ss_pred             hcCCEEEEeecccccCCcCCcchhhh-ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCC
Confidence            889999998864     112212222 47999999999999999986   6788888999999999999986321    1


Q ss_pred             cCC---------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHH
Q 016612          184 SRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV  254 (386)
Q Consensus       184 ~~~---------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (386)
                      ...         ...+..+++.|+||.+ +.+|+|+||++++ +.+.+.+...........+...+.++...+.. ....
T Consensus       207 ~s~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~ii~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~  283 (374)
T PRK05839        207 PSLLEASILVGNESFKNVLVINSISKRS-SAPGLRSGFIAGD-ASILKKYKAYRTYLGCASPLPLQKAAAVAWLD-DEHA  283 (374)
T ss_pred             CCHhhhhcccCccccCcEEEEecccccc-CCccceeEEEecC-HHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc-chHH
Confidence            111         1124679999999998 5568999999986 55655555444333334444444444333321 1111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC-cceeccCCCCccc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKS  333 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~~~~G~~~~  333 (386)
                      ++..+..+.-.+.+.+.      +  +..          . +..+.++++.+++.   ..+.+++. ..|+.+.+|..+.
T Consensus       284 ~~~~~~~~~~~~~~~~~------l--~~~----------~-p~gg~fi~~~~~~~---~~~~~~l~~~~gi~v~pg~~f~  341 (374)
T PRK05839        284 EFFRNIYAKNLKLAREI------L--GIT----------I-PPATFYVWLPVDND---EEFTKKLYQNEGIKVLPGSFLG  341 (374)
T ss_pred             HHHHHHHHHHHHHHHHh------c--CCC----------C-CCeeEEEEEeCCCh---HHHHHHHHHHCCEEEeCchhhC
Confidence            11111111112222211      0  110          1 22367777777532   34555553 3677777765421


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                         .+                +..++++|||++.  +++.+.+++|++.++
T Consensus       342 ---~~----------------~~~~~~iRis~~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        342 ---RN----------------GIGKGYVRIALVYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             ---CC----------------CCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence               00                1136889999974  445555666665553

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=4.2e-26  Score=211.92  Aligned_cols=277  Identities=15%  Similarity=0.160  Sum_probs=185.1

Q ss_pred             HHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CH
Q 016612           57 RDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL  129 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~  129 (386)
                      ...+++.++++++.+ +.|++++|+ +++..+...+.+|+ +++..|.|..+.    ..++..|.+++.++.+     ++
T Consensus        57 ~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l~~g~-viv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~  131 (356)
T PRK08056         57 YRHLHQALARHHQVPASWILAGNGETESIFAVVSGLKPRR-AMIVTPGFAEYR----RALQQVGCEIRRYSLREADGWQL  131 (356)
T ss_pred             HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhCCCC-EEEeCCCcHHHH----HHHHHcCCeEEEEecccccCCCc
Confidence            567777788888776 556666665 88876665567876 677789998774    5567889999988753     22


Q ss_pred             -HHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc------CCCCCCccEEEeccc
Q 016612          130 -DEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSAT  199 (386)
Q Consensus       130 -~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~------~~~~~~~di~~~S~s  199 (386)
                       +++.+.+.++++++++++|+||||.+.+   +++|+++|++++++||+|++|..-...      .....+.++++.|+|
T Consensus       132 ~~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~S  211 (356)
T PRK08056        132 TDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLT  211 (356)
T ss_pred             cHHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEech
Confidence             3555666788999999999999999998   788999999999999999997532211      111235789999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcce
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKK  276 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~  276 (386)
                      |++ +.+|+|+||++++++.+.+.+....  .....+...+.++...++.-   ....+.+.++.+.+.+.+++.+    
T Consensus       212 K~~-~~~G~RiG~~v~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~----  284 (356)
T PRK08056        212 KFY-AIPGLRLGYLVNSDDAAVARMRRQQ--MPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALP----  284 (356)
T ss_pred             hhc-cCcchhheeeecCCHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence            999 6668999999986555555444322  22334445555544444321   1112334444444555554322    


Q ss_pred             EecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          277 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       277 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                                +..++    +..++++++.++..  ...+.+.+...|+.+++|..+.                     +.
T Consensus       285 ----------~~~~~----~~~~~~~~~~~~~~--~~~~~~~l~~~gI~v~~~~~f~---------------------~~  327 (356)
T PRK08056        285 ----------LLTVW----PGRANYLFLRCERP--DIDLQRALLTQRILIRSCANYP---------------------GL  327 (356)
T ss_pred             ----------CcEEc----CCCCcEEEEEcCCC--hHHHHHHHHHCCeEEEECCCCC---------------------CC
Confidence                      22221    12467778877532  3456666666788877776421                     12


Q ss_pred             CCCeEEEEecc-CChHHHHHHHHHHHh
Q 016612          357 TEDLVRISVGI-EDVNDLISDLDKALR  382 (386)
Q Consensus       357 ~~~~iRis~~~-~~~~~~i~~l~~~l~  382 (386)
                      .+++|||+++. ++++.+++.|++.++
T Consensus       328 ~~~~iRis~~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        328 DSRYYRVAIRSAAENERLLAALRNVLT  354 (356)
T ss_pred             CCCEEEEEEcCHHHHHHHHHHHHHHHc
Confidence            35789999975 888999999988765

>PLN02231 alanine transaminase

Probab=99.95  E-value=1.9e-26  Score=222.22  Aligned_cols=180  Identities=19%  Similarity=0.226  Sum_probs=135.5

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcH-HHHHHHHHH-hc-CCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALAAVTH-LL-GTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-t~al~~~~~-~~-~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|+.. |.+ +|+++.+++.+..|.+   +.|++++| ++++..++. ++ .+||.|+++.|.|+.+.    ..++..
T Consensus       161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~----~~~~~~  236 (534)
T PLN02231        161 TGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYS----ASIALH  236 (534)
T ss_pred             ccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHH----HHHHHc
Confidence            4669988 887 8999999998876642   44555555 599986554 55 47999999999999886    455677


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhCC------CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          118 GVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      |.+++.++.+       |+++|++.+++      +++++++++|+||||.+++   +++|+++|+++|++||+||+|..-
T Consensus       237 g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l  316 (534)
T PLN02231        237 GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQEN  316 (534)
T ss_pred             CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence            8888887653       78899888754      6899999999999999985   788999999999999999998643


Q ss_pred             Ccc------CCCC---------C-CccEEEeccccccccCCCceEEEEEEc--ChhHHHHHHHhhh
Q 016612          182 VLS------RPLE---------L-GADIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQN  229 (386)
Q Consensus       182 ~~~------~~~~---------~-~~di~~~S~sK~~~g~~g~~~G~i~~~--~~~~~~~~~~~~~  229 (386)
                      .+.      +...         . ...+++.|+||.+.|.+|+|+||+++.  ++.+.+.+.....
T Consensus       317 ~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~  382 (534)
T PLN02231        317 VYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS  382 (534)
T ss_pred             ccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh
Confidence            321      1000         1 135788999998767778999999873  4556665544433

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.95  E-value=5e-26  Score=214.90  Aligned_cols=295  Identities=18%  Similarity=0.210  Sum_probs=190.0

Q ss_pred             hHHHHHHHHHhhcCCC--ceEE-eCcHHHHHHHHH-Hh----cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKAD--RALC-FTSGMAALAAVT-HL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~-~~~gt~al~~~~-~~----~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      ..+++++.+++++|.+  +.|+ ++++|++++.+. ++    +++||+|++++++|++....+...++..|++++.++.+
T Consensus        61 ~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  140 (398)
T TIGR03392        61 RYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG  140 (398)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC
Confidence            4677889999999974  4555 445569987554 34    47999999999999886655667778899999998763


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |+++++++++++|++|++++++||||.+.|+++|.++|+++|+++++|++|+.+... +....+.|++++|+||.
T Consensus       141 ~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~  220 (398)
T TIGR03392       141 ADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKL  220 (398)
T ss_pred             CCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccc
Confidence                 789999999999999999999999999999999999999999999999999876653 23345789999999997


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhh--------------------cCCCCChh-hHHHHHhcCCcHHH-HHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNA--------------------EGSGLAPF-DCWICLRGVKTMAL-RVEKQQD  259 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--------------------~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~  259 (386)
                      + ||+|  +|+++++++ +.+.+......                    ...+..+. ....+..+++.+.. -.+...+
T Consensus       221 ~-gp~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~  296 (398)
T TIGR03392       221 Y-GPTG--IGVLYGKTE-LLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEA  296 (398)
T ss_pred             c-CCCc--eEEEEEcHH-HHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            6 6777  799998754 44333221100                    00111111 22222222222111 0112223


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~  339 (386)
                      +...+.+++.+          .+..++++.++..   ...++++|.+++.. .+.+.+.+..+||.++.|..++.   + 
T Consensus       297 ~~~~l~~~l~~----------~l~~l~g~~~~~~---~~~~i~~~~~~~~~-~~~l~~~L~~~gI~v~~g~~~~~---~-  358 (398)
T TIGR03392       297 WSVSLADLAEE----------RLAQLPGFRSFRC---PGSSLLAFDFAGVH-HSDLAALLAESGIALRAGQHCAQ---P-  358 (398)
T ss_pred             HHHHHHHHHHH----------HHhcCCCeEEeCC---CCCcEEEEEeCCcC-HHHHHHHHHhCCEEEecCccchH---H-
Confidence            33333333332          1222222222211   13468888876533 45677777788998887765220   0 


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                                .....+. +++||+|++.    ++++.+++.|++++++
T Consensus       359 ----------~~~~~g~-~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~  395 (398)
T TIGR03392       359 ----------LMAALGV-SGTLRASFAPYNTQQDVDALVDAVGAALEL  395 (398)
T ss_pred             ----------HHHHhCC-CCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence                      1111121 4689999975    5566666666555544

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.95  E-value=2.3e-25  Score=195.35  Aligned_cols=298  Identities=20%  Similarity=0.281  Sum_probs=213.5

Q ss_pred             CCCCCccccCCCCchHHHHHHHHHhhcCCC---ceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           42 TENGPYDYTRSGNPTRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        42 ~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      .+.+.++|+.....+.+++.++.++.++.+   +.++++.|- -++. ++.++.++||.|++..|.|++..    ...+.
T Consensus        51 vdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~----~~i~~  126 (388)
T COG1168          51 VDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFY----NAIKL  126 (388)
T ss_pred             HhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHH----HHHhh
Confidence            457889999334458999999999988764   567777675 8887 67778999999999999999886    56678


Q ss_pred             CCcEEEEeCCC--------CHHHHHhhhC-CCceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCCCcc
Q 016612          117 TGVVVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS  184 (386)
Q Consensus       117 ~g~~~~~v~~~--------d~~~l~~~~~-~~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~~~~  184 (386)
                      .|.++...|..        |.++|++++. +++++++++|||||+|.+.   .+++|.++|.+||+.||.||.|+.-.+.
T Consensus       127 n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~  206 (388)
T COG1168         127 NGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLG  206 (388)
T ss_pred             cCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeeccccccccc
Confidence            88888888763        9999998887 5679999999999999997   4899999999999999999998732221


Q ss_pred             ----------CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHH-HHHhhhhcCCCCChhhHHHHHh----cCCc
Q 016612          185 ----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGLAPFDCWICLR----GVKT  249 (386)
Q Consensus       185 ----------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~  249 (386)
                                ++...+..+++.|.||+|+ .+|+.++.++..++.+..+ .+.+......+.+.+...+...    +-.-
T Consensus       207 g~~h~~~a~ls~~~a~~~it~~saSKtFN-laGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~W  285 (388)
T COG1168         207 GHKHIPFASLSERFADNSITLTSASKTFN-LAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPW  285 (388)
T ss_pred             CCCccchhhcChhhhcceEEEeecccccc-chhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHH
Confidence                      1112245699999999995 5689999999998887443 3444444444555554444333    3333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe-----CCHHhHHHHHhhcCccee
Q 016612          250 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-----GSLALSKHVVETTKYFSI  324 (386)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~gi  324 (386)
                      +....+.+..|.+.+.+++.+.-             |++.+..  |. .+++.|+.+     ++....+.++++.+   +
T Consensus       286 Ld~L~~yl~~N~~~~~~~l~~~~-------------P~v~v~~--p~-gTYL~WLD~r~l~l~d~~l~~~ll~~ak---V  346 (388)
T COG1168         286 LDELLEYLKDNRDYVADFLNKHL-------------PGVKVTE--PQ-GTYLAWLDCRELGLDDSELAEFLLEEAK---V  346 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhC-------------CCcEEec--CC-CceeeeeeccccCCChHHHHHHHHHhhc---E
Confidence            45555666677777777777542             2222221  12 255666654     33455556666654   5


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHhcC
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+.|..+.                     ..+.|++|++++  ....++.+++|.++|++.
T Consensus       347 al~~G~~FG---------------------~~g~gf~RlN~acpr~~L~eal~ri~~al~~~  387 (388)
T COG1168         347 ALSPGSTFG---------------------EEGSGFVRLNFACPRAILEEALERLKRALKKR  387 (388)
T ss_pred             eccCCCccC---------------------cCCCceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence            566665422                     114689999995  589999999999998764

>PRK07337 aminotransferase; Validated

Probab=99.95  E-value=1.1e-25  Score=211.72  Aligned_cols=289  Identities=19%  Similarity=0.173  Sum_probs=186.3

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|.+. |.+ +++++.+++.+.+|.    ++.++++++++++. ++..++++||+|++++|+|+++.    ..++..|
T Consensus        60 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g  135 (388)
T PRK07337         60 VTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNR----HFVAAAE  135 (388)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHcC
Confidence            4567766 766 788888888776664    24455555569987 44557899999999999999885    3345667


Q ss_pred             cEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       119 ~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+++.++.+       |++++++.+++++++|++++|+||||.+.+   +++|.++|+++++++|+||+|..-.+.    
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~  215 (388)
T PRK07337        136 GRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPV  215 (388)
T ss_pred             CEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence            788777652       688999999889999999999999999986   788899999999999999998632211    


Q ss_pred             CCCCC-CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----HHHHHHHHH
Q 016612          185 RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQ  258 (386)
Q Consensus       185 ~~~~~-~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  258 (386)
                      ..... +..+++.|+||.+ |.+|+|+||+++++ .+.+.+...........+...+.++...+..     +......+.
T Consensus       216 ~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~~~~~-~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~  293 (388)
T PRK07337        216 SALSLGDDVITINSFSKYF-NMTGWRLGWLVVPE-ALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFK  293 (388)
T ss_pred             ChhhccCCEEEEEechhhc-CCchhheeeeecCH-HHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHH
Confidence            11122 2347789999999 55689999999874 4655565555444444555555554443321     222223333


Q ss_pred             HHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----HhHHHHHhh-cCcceeccCCCCcc
Q 016612          259 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVET-TKYFSITVSFGSVK  332 (386)
Q Consensus       259 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-l~~~gi~~~~G~~~  332 (386)
                      ++.+.+.+.|++..               ..+. .. +..|.++++.++..     ....++.+. +...|+.+.+|..+
T Consensus       294 ~~r~~~~~~L~~~~---------------~~~~-~~-p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f  356 (388)
T PRK07337        294 RRRDFIVPALESLG---------------FKVP-VM-PDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDF  356 (388)
T ss_pred             HHHHHHHHHHHhcC---------------Cccc-cC-CCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhh
Confidence            44444444444321               1100 01 12356777777431     124455544 45668877777653


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  378 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  378 (386)
                      ..                    ...++++||+++. +.+.+.+.++
T Consensus       357 ~~--------------------~~~~~~~Ri~~~~-~~~~l~~~l~  381 (388)
T PRK07337        357 GP--------------------HAPRDYIRLSYAT-SMSRLEEAVA  381 (388)
T ss_pred             CC--------------------CCCCCEEEEEecC-CHHHHHHHHH
Confidence            20                    0125789999986 3444444443

>PRK07777 aminotransferase; Validated

Probab=99.95  E-value=6.8e-26  Score=213.09  Aligned_cols=294  Identities=19%  Similarity=0.162  Sum_probs=187.5

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC-----ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +++++.+++.+.+|.+     +.+++++|++++. ++.+++++||+|+++.|.|+.+.    .+++..
T Consensus        54 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~----~~~~~~  129 (387)
T PRK07777         54 VNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYA----AVIAMA  129 (387)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHC
Confidence            3568776 776 7888888888777753     3455555568987 55668899999999999998875    444566


Q ss_pred             CcEEEEeCC--------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC-
Q 016612          118 GVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-  185 (386)
Q Consensus       118 g~~~~~v~~--------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~-  185 (386)
                      |.+++.++.        .|++++++.+++++++|++++|+||||.+.+   +++|.++|+++++++|+|++|....+.. 
T Consensus       130 g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~  209 (387)
T PRK07777        130 GAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA  209 (387)
T ss_pred             CCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC
Confidence            777777654        2778999988889999999999999999975   8899999999999999999986322110 


Q ss_pred             ---C----C-CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC----cHHHH
Q 016612          186 ---P----L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALR  253 (386)
Q Consensus       186 ---~----~-~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  253 (386)
                         +    . ..+.++++.|+||.+ |.+|+|+||+++++ .+.+.+...........+...+.++...+.    .....
T Consensus       210 ~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  287 (387)
T PRK07777        210 RHLPLATLPGMRERTVTISSAAKTF-NVTGWKIGWACGPA-PLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAAL  287 (387)
T ss_pred             CcccHhhCCCCcCcEEEEeechhhc-cCcCceeEEEecCH-HHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHH
Confidence               1    1 135689999999999 54589999999874 455545444432222223333333322221    12222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhcC-cceeccCCCC
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTK-YFSITVSFGS  330 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~-~~gi~~~~G~  330 (386)
                      .+.+.++.+.+.+.+++..         +.      ++  . ...+.++++.++.  ......+.+.+. ..|+.+.+|.
T Consensus       288 ~~~~~~~~~~l~~~L~~~~---------~~------~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~  349 (387)
T PRK07777        288 RDSLQAKRDRLAAGLAEAG---------FE------VH--D-SAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMS  349 (387)
T ss_pred             HHHHHHHHHHHHHHHHhCC---------CC------cc--C-CCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCch
Confidence            3444455555555555421         11      11  1 1123445555431  113456666663 5688777776


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHH
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKAL  381 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l  381 (386)
                      .+...  +                ...+++|||+++.  +++++.++.|++.+
T Consensus       350 ~f~~~--~----------------~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        350 VFYDP--A----------------DAWNHLVRFAFCKRDDTLDEAIRRLRALR  384 (387)
T ss_pred             HhCCC--C----------------cCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence            42100  0                0125689999985  55555566665544

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=5.6e-26  Score=210.71  Aligned_cols=274  Identities=16%  Similarity=0.195  Sum_probs=186.0

Q ss_pred             HHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------
Q 016612           57 RDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------  127 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------  127 (386)
                      ..++++.++++++.+ +.|++++|+ +++..+...+.+ +.|++++|.|+.+.    ..++..|.+++.++.+       
T Consensus        56 ~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~~-~~v~i~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~  130 (354)
T PRK06358         56 YLELRKRIASFEQLDLENVILGNGATELIFNIVKVTKP-KKVLILAPTFAEYE----RALKAFDAEIEYAELTEETNFAA  130 (354)
T ss_pred             HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCC-CcEEEecCChHHHH----HHHHHcCCeeEEEeCccccCCCc
Confidence            456777777777766 556666665 888866665655 68999999998885    4456788888888753       


Q ss_pred             CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc--------CCCCCCccEEEe
Q 016612          128 DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMH  196 (386)
Q Consensus       128 d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~--------~~~~~~~di~~~  196 (386)
                      | +++.+.+.++++++++++|+||||.+.+   +++|.++|+++++++|+||+|......        .....+..+++.
T Consensus       131 d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~  209 (354)
T PRK06358        131 N-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIR  209 (354)
T ss_pred             c-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEE
Confidence            3 4555556668999999999999999986   788899999999999999998632211        111224679999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCC
Q 016612          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       197 S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      |+||.+ |.+|+|+||++++++.+.+.+.....  ....+...+.+....++.-   ....+.+.++.+.+.+.|++.  
T Consensus       210 S~SK~~-gl~G~RiG~lv~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~--  284 (354)
T PRK06358        210 AFTKFF-AIPGLRLGYGLTSNKNLAEKLLQMRE--PWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEF--  284 (354)
T ss_pred             echhhc-cCcchhheeeecCCHHHHHHHHHhCC--CCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence            999999 55689999999876666555554432  2345555666655555421   222233334444444444432  


Q ss_pred             cceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          274 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       274 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                                  ++..++    ...++++++++++.   ..+.+.+...|+.+.+|..+.                    
T Consensus       285 ------------~~~~~~----~~~g~f~~~~~~~~---~~~~~~l~~~gI~v~~~~~f~--------------------  325 (354)
T PRK06358        285 ------------KGIKVY----KPSVNFIFFKLEKP---IDLRKELLKKGILIRSCSNYR--------------------  325 (354)
T ss_pred             ------------CCcEEc----CCcceEEEEEcCch---HHHHHHHHHCCeEEEECCCCC--------------------
Confidence                        222222    22467888888643   456666667788888776531                    


Q ss_pred             cCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 016612          354 RGLTEDLVRISVGI-EDVNDLISDLDKAL  381 (386)
Q Consensus       354 ~~~~~~~iRis~~~-~~~~~~i~~l~~~l  381 (386)
                       +.++++|||+++. ++++++++.|++.+
T Consensus       326 -~~~~~~iRls~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        326 -GLDENYYRVAVKSREDNKKLLKALEVIL  353 (354)
T ss_pred             -CCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence             1235789999975 99999999998765

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=1.9e-26  Score=215.68  Aligned_cols=274  Identities=16%  Similarity=0.180  Sum_probs=185.6

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           56 TRDALESLLAKLDKAD-RALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      ...++++.+++++|.+ +.|++++|+ +++..+ ..++++||+|++++|.|+.+.    ..++..|++++.++.+     
T Consensus        87 ~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~~~~~~~  162 (380)
T PLN03026         87 ESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYV----FDAAVNGAEVIKVPRTPDFSL  162 (380)
T ss_pred             CHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCc
Confidence            3567888888888876 556666665 888754 457899999999999997664    4456789998888753     


Q ss_pred             CHHHHHhhh-CCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----C-CCCCCccEEEeccccc
Q 016612          128 DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----R-PLELGADIVMHSATKF  201 (386)
Q Consensus       128 d~~~l~~~~-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----~-~~~~~~di~~~S~sK~  201 (386)
                      |++++++.+ ++++++|++++|+||||.+.+.+++.++++.. +++|+||+|......    . ....+..+++.||||.
T Consensus       163 d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~  241 (380)
T PLN03026        163 DVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKR  241 (380)
T ss_pred             CHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHh
Confidence            788999888 68899999999999999999999999999865 999999998532111    1 1123567999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEe
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVN  278 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~  278 (386)
                      + |.+|+|+||+++++ ++.+.+......  ...+...+.++...++..   ....+.+.++.+.+.+.|++.+      
T Consensus       242 ~-glaGlRiGy~~~~~-~~i~~l~~~~~~--~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~------  311 (380)
T PLN03026        242 A-GLAGLRVGYGAFPL-SIIEYLWRAKQP--YNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVP------  311 (380)
T ss_pred             h-cCccccceeeecCH-HHHHHHHHhcCC--CCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCC------
Confidence            9 67789999999874 455555444332  345555555555555432   1222223333334444444321      


Q ss_pred             cCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCC
Q 016612          279 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  358 (386)
Q Consensus       279 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  358 (386)
                              +..+.    +..++++++.++......++.+.+...|+.++++...                      + .+
T Consensus       312 --------~~~~~----p~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~----------------------~-~~  356 (380)
T PLN03026        312 --------FLEPY----PSDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSK----------------------E-LK  356 (380)
T ss_pred             --------CCeEC----CCCCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCCC----------------------C-CC
Confidence                    11111    2346788888753223556777776778877654320                      1 25


Q ss_pred             CeEEEEecc-CChHHHHHHHHH
Q 016612          359 DLVRISVGI-EDVNDLISDLDK  379 (386)
Q Consensus       359 ~~iRis~~~-~~~~~~i~~l~~  379 (386)
                      +++|||++. ++++.+++.|++
T Consensus       357 ~~lRis~~~~~~~~~l~~al~~  378 (380)
T PLN03026        357 GYIRVSVGKPEHTDALMEALKQ  378 (380)
T ss_pred             CEEEEecCCHHHHHHHHHHHHH
Confidence            689999985 456777777654

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.95  E-value=5.5e-26  Score=216.11  Aligned_cols=297  Identities=21%  Similarity=0.263  Sum_probs=192.7

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeC-cHHHHHHHHHH-----hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKAD--RALCFT-SGMAALAAVTH-----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~-~gt~al~~~~~-----~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      ..+++++.+++++|.+  +.|+++ ++|++++.+..     .+++||+|+++++.|++....+..+++..|++++.++.+
T Consensus        77 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~  156 (424)
T PLN02855         77 AYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT  156 (424)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC
Confidence            4678899999999973  455555 45688875543     368999999999999988777777788889999888753


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |++++++.+++++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+... +....++|++++|+||+
T Consensus       157 ~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~  236 (424)
T PLN02855        157 PDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKM  236 (424)
T ss_pred             CCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccc
Confidence                 789999999999999999999999999999999999999999999999999877653 33446789999999996


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhh--------------------cCCCCChhhHHHH-HhcCCcHHH-HHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNA--------------------EGSGLAPFDCWIC-LRGVKTMAL-RVEKQQD  259 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~  259 (386)
                      + ||.|  +|+++++++ +.+.+..+...                    ...+.......+. ..+++.+.. -.++..+
T Consensus       237 ~-gp~G--~G~l~~~~~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~  312 (424)
T PLN02855        237 C-GPTG--IGFLWGKSD-LLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHE  312 (424)
T ss_pred             c-CCCc--cEEEEEchh-hhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            5 7777  799998754 43333222100                    0111122222221 222221111 1222233


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhc---cCCCCceEEEEeCCHHhHHHHHhhcCcc-eeccCCCCccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ---AKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLI  335 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~~~~G~~~~~~  335 (386)
                      +...+.+++.+          .|..+++..++.+.   ...++++++|.+++.. ...+.+.|... +|.++.|.++.. 
T Consensus       313 ~~~~l~~~l~~----------~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~-~~~v~~~L~~~~gI~v~~g~~c~~-  380 (424)
T PLN02855        313 YEVELGTYLYE----------KLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIH-PTDLSTFLDQQHGVAIRSGHHCAQ-  380 (424)
T ss_pred             HHHHHHHHHHH----------HHhcCCCEEEeCCCcccccCcccEEEEEECCcC-HHHHHHHhcccCCEEEechhhhhH-
Confidence            33333333322          12222333333221   1234688999886533 55788888766 898887765321 


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                        +.           ....|. ++++|+|++.    ++++.+++.|+++++
T Consensus       381 --~~-----------~~~~g~-~~~iRiS~~~ynt~~di~~l~~~l~~~~~  417 (424)
T PLN02855        381 --PL-----------HRYLGV-NASARASLYFYNTKEEVDAFIHALKDTIA  417 (424)
T ss_pred             --HH-----------HHHhCC-CCeEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence              10           011232 3679999976    455555555554443

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.3e-25  Score=212.21  Aligned_cols=297  Identities=21%  Similarity=0.230  Sum_probs=188.2

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhh---cCCCceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKL---DKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~---~g~~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ...|.+. |.+ +++++.+++...   ...++.++++++++++.. +..++++||+|++++|.|+.+.    .+++..|.
T Consensus        59 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g~  134 (397)
T PRK07568         59 VLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYN----GFATSAGV  134 (397)
T ss_pred             CcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHH----HHHHHcCC
Confidence            3457766 766 677777777632   122345555556699874 4557899999999999998775    34567788


Q ss_pred             EEEEeCCC--------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc-----
Q 016612          120 VVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----  183 (386)
Q Consensus       120 ~~~~v~~~--------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~-----  183 (386)
                      +++.++.+        +++++++++++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|..-.+     
T Consensus       135 ~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  214 (397)
T PRK07568        135 KIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKY  214 (397)
T ss_pred             EEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCc
Confidence            88888752        458898888889999999999999999985   78899999999999999999863221     


Q ss_pred             cCCCC----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHH
Q 016612          184 SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVE  255 (386)
Q Consensus       184 ~~~~~----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  255 (386)
                      .....    .+..+++.|+||.+ +.+|+|+||++++++++.+.+...... ....+...+.++...+..    +.....
T Consensus       215 ~s~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~  292 (397)
T PRK07568        215 TSALSLEGLEDRVIIIDSVSKRY-SACGARIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDTPESYFDEVRE  292 (397)
T ss_pred             cChhhcCCCcCCEEEEecchhhc-cCCCcceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCHHHHHHHHH
Confidence            11111    24569999999999 456799999998766665544333222 233444455444444432    122223


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC------cceeccCCC
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK------YFSITVSFG  329 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~------~~gi~~~~G  329 (386)
                      .+.++...+.+.|++.+              +..+.  .+. .+.++++.++.. ....+.+.+.      ..|+.+.+|
T Consensus       293 ~~~~~~~~l~~~L~~~~--------------~~~~~--~p~-g~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~gv~v~pg  354 (397)
T PRK07568        293 EYKKRRDILYEELNKIP--------------GVVCE--KPK-GAFYIIAKLPVD-DAEDFAKWLLTDFNYNGETVMVAPA  354 (397)
T ss_pred             HHHHHHHHHHHHHhcCC--------------Cceec--CCC-cceEEEEecCCC-CHHHHHHHHHhhcccccceEEEeCc
Confidence            33444444445554321              11111  111 234456677432 2333444332      257777776


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHhcC
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+..  .+                +.+++++|||++  .+++++.++.|.+++++.
T Consensus       355 ~~f~~--~~----------------~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~~  393 (397)
T PRK07568        355 SGFYA--TP----------------GLGKNEIRIAYVLNEEDLKRAMEILKEALEKY  393 (397)
T ss_pred             hHhcC--CC----------------CCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence            54210  01                123578999986  477788888888888754

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=7.5e-26  Score=209.81  Aligned_cols=274  Identities=18%  Similarity=0.231  Sum_probs=182.8

Q ss_pred             HHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----C
Q 016612           57 RDALESLLAKLDKAD-RALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D  128 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d  128 (386)
                      ..++++.++++++.+ +.|++++|+ +++..+ .+++++||+|++++|+|+.+.    ..++..|.+++.++.+     |
T Consensus        61 ~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~d  136 (351)
T PRK14807         61 AEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYS----VYSKIAGAVEIPVKLKEDYTYD  136 (351)
T ss_pred             HHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEeecCCCCCCC
Confidence            467788888888875 566666665 788754 557899999999999998664    4556788888888753     6


Q ss_pred             HHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC---ccC-CCCCCccEEEeccccccc
Q 016612          129 LDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV---LSR-PLELGADIVMHSATKFIA  203 (386)
Q Consensus       129 ~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~---~~~-~~~~~~di~~~S~sK~~~  203 (386)
                      ++++++.+++ +++++++++|+||||.+.+.+++.++|++++.++|+||+|....   ... ....+..+++.|+||.+ 
T Consensus       137 ~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-  215 (351)
T PRK14807        137 VGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAF-  215 (351)
T ss_pred             HHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhc-
Confidence            8899998874 89999999999999999999999999999888999999985321   101 11235679999999999 


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc--HHHHHHHHHHHHHHHHHHHhhCCCcceEecCC
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  281 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  281 (386)
                      |.+|+|+||++++ +++.+.+......  ...+...+.++...++.  +....+...++.+.+.+.+++           
T Consensus       216 ~~~GlRiG~~v~~-~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~-----------  281 (351)
T PRK14807        216 GLAGLRVGYAVAN-ENILKYLNLVKSP--YNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSK-----------  281 (351)
T ss_pred             ccchhceeeeecC-HHHHHHHHHccCC--CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            6678999999986 5566655544332  33455555555444432  111222222333333333332           


Q ss_pred             CCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeE
Q 016612          282 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  361 (386)
Q Consensus       282 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  361 (386)
                         ++++.+.    +..++++++.+++   .+.+.+.+...|+.+..+...     +                + .++++
T Consensus       282 ---~~g~~~~----~~~~~~~~i~~~~---~~~~~~~l~~~gV~v~~~~~~-----~----------------~-~~~~i  329 (351)
T PRK14807        282 ---IPGIKVY----PSKTNFILVKFKD---ADYVYQGLLERGILVRDFSKV-----E----------------G-LEGAL  329 (351)
T ss_pred             ---CCCcEEC----cCCccEEEEEcCC---HHHHHHHHHHCCEEEEECCCC-----C----------------C-CCCeE
Confidence               2222221    2246777887764   345555555566665432210     0                1 25679


Q ss_pred             EEEecc-CChHHHHHHHHHHH
Q 016612          362 RISVGI-EDVNDLISDLDKAL  381 (386)
Q Consensus       362 Ris~~~-~~~~~~i~~l~~~l  381 (386)
                      ||+++. ++.+.+++.|++.+
T Consensus       330 Ris~~~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        330 RITVSSCEANDYLINGLKELL  350 (351)
T ss_pred             EEEcCCHHHHHHHHHHHHHhh
Confidence            999985 66778888877654

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.95  E-value=7.2e-26  Score=210.36  Aligned_cols=324  Identities=20%  Similarity=0.192  Sum_probs=208.0

Q ss_pred             eeeccCCCCCCCCCcccceee-eeeeecCCCCCCCCccccCC-C-CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQ-TATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~   87 (386)
                      ..++++ +|+|+|...+|... +......+. .+....|... | .+.++++++.+++++|.++.+++++|++++. ++.
T Consensus         2 ~~~~~~-~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~   79 (349)
T cd06454           2 KVLNFC-SNDYLGLANHPEVIEAAKEALDKY-GVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLS   79 (349)
T ss_pred             Cceecc-cCCccccCCCHHHHHHHHHHHHHh-CCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHH
Confidence            357888 99999999555433 211111110 0111122222 4 3588999999999999988899999998865 556


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC-----CCceEEEEeCCCCCCcccccHHHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIA  162 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~-----~~~~~v~~~~~~nptG~~~~l~~i~  162 (386)
                      +++++||.|++++|.|+++..    .++..|.+++.++..|.+++++.++     ++++++++++++||+|...|+++|.
T Consensus        80 ~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~  155 (349)
T cd06454          80 TLAGKGDLIISDSLNHASIID----GIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELV  155 (349)
T ss_pred             HhcCCCCEEEEehhhhHHHHH----HHHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHH
Confidence            678999999999999988753    3456788888888778888888876     3578888899999999999999999


Q ss_pred             HHHHHcCCEEEEeCCCCCCCcc---------CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh--hc
Q 016612          163 EMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AE  231 (386)
Q Consensus       163 ~la~~~~~~li~D~a~~~~~~~---------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~--~~  231 (386)
                      ++|+++|+++|+|++++.+...         .....+.|++++|+||++++ .   +|+++.+ +.+.+.+.....  ..
T Consensus       156 ~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~---gG~i~~~-~~~~~~~~~~~~~~~~  230 (349)
T cd06454         156 DLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-V---GGYIAGS-KELIDYLRSYARGFIF  230 (349)
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-c---CCEEECC-HHHHHHHHHhchhhhc
Confidence            9999999999999998755432         11234789999999999954 3   4888776 445444433222  11


Q ss_pred             CCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC
Q 016612          232 GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  308 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~  308 (386)
                      +...++....++...++.+   ..+.++..++.+.+.+.+.+..         +.      ++.   ...+.++++.+.+
T Consensus       231 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g---------~~------~~~---~~~~~~~~~~~~~  292 (349)
T cd06454         231 STSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKELG---------FP------VGG---SPSHIIPPLIGDD  292 (349)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC---------Cc------ccC---CCCCcEEEEeCCC
Confidence            2234444443433333222   2334455555555555555431         11      110   1122334444443


Q ss_pred             HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       309 ~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ....+++.+.+...|+.+..+....   .                 ....+++|++++....++.++.+.++|++.
T Consensus       293 ~~~~~~~~~~L~~~gI~~~~~~~~~---~-----------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         293 PAKAVAFSDALLERGIYVQAIRYPT---V-----------------PRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             hHHHHHHHHHHHhCCceEEEecCCc---c-----------------CCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            3446778777777787765432100   0                 012467999998766666666666666554

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.95  E-value=6.9e-26  Score=213.82  Aligned_cols=289  Identities=16%  Similarity=0.180  Sum_probs=175.7

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCCC-ceEEeCcH-HHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc---
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKAD-RALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV---  119 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~-~~i~~~~g-t~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~---  119 (386)
                      ..|.+. |.+ +++++.+++.+. +.+ +.|++++| ++++..+..++.+||.|++++|+|+.+.    .+++..|.   
T Consensus        69 ~~Y~p~~g~~~lr~aia~~~~~~-~~~~d~I~it~Ga~~al~~l~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~  143 (402)
T TIGR03542        69 RGYGPEQGYPFLREAIAENDYRG-RIDPEEIFISDGAKCDVFRLQSLFGSDNTVAVQDPVYPAYV----DSNVMAGRAGV  143 (402)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHhc-CCCHHHEEECCCcHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCCccc
Confidence            457665 776 677777765322 233 45555555 4888877777899999999999999886    44456677   


Q ss_pred             --------EEEEeCCCCHHHHHhhh--CCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc--
Q 016612          120 --------VVKRVNTCDLDEVASAI--GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--  184 (386)
Q Consensus       120 --------~~~~v~~~d~~~l~~~~--~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~--  184 (386)
                              +++.++.+..+.+...+  .+++++|++++|+||||.+++   +++|.++|+++|++||+||+|..-...  
T Consensus       144 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~  223 (402)
T TIGR03542       144 LDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS  223 (402)
T ss_pred             cccccccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC
Confidence                    88887764221121111  157899999999999999987   788999999999999999998632211  


Q ss_pred             --CC-C--C--CCccEEEeccccccccCCCceEEEEEEcChhHH-------HHHHHhhhhcCCCCChhhHHHHHhcCCc-
Q 016612          185 --RP-L--E--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-------KELYFLQNAEGSGLAPFDCWICLRGVKT-  249 (386)
Q Consensus       185 --~~-~--~--~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  249 (386)
                        .+ .  .  .+..+++.|+||.+ |.+|+|+||++++++.+.       +...........+.+...+.++...+.. 
T Consensus       224 ~~~~~~~~~~~~~~vi~~~SfSK~~-g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~  302 (402)
T TIGR03542       224 LPHSIFEIPGAKECAIEFRSFSKTA-GFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGE  302 (402)
T ss_pred             CCcchhhCCCCcccEEEEecCcccc-CCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCc
Confidence              11 1  1  13468899999999 556899999999755331       1111111112223444444443333321 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC-ccee
Q 016612          250 ----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSI  324 (386)
Q Consensus       250 ----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi  324 (386)
                          +......+.++.+.+.+.|++..         +.      +.   ....+.++++.++......++.+.+. ..++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~------~~---~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv  364 (402)
T TIGR03542       303 GLQPILEAISYYMENARILRKALEAAG---------FK------VY---GGEHAPYLWVKTPEGISSWDFFDFLLYQYHV  364 (402)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhcC---------ce------ec---CCCceeEEEEECCCCCCHHHHHHHHHHhCCE
Confidence                22223334455555556655431         11      11   01135678888864323445555543 4577


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHH
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKA  380 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~  380 (386)
                      .+.+|..+.                     ..+++++||+++.  +++++.++.|+++
T Consensus       365 ~v~pg~~f~---------------------~~~~~~iRis~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       365 VGTPGSGFG---------------------PSGEGFVRFSAFGKRENIVEACERIKEA  401 (402)
T ss_pred             EEeCchhhC---------------------CCCCCEEEEEecCCHHHHHHHHHHHHhh
Confidence            777766421                     0125789999753  4455555555543

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.95  E-value=2.2e-25  Score=209.87  Aligned_cols=290  Identities=19%  Similarity=0.201  Sum_probs=192.5

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|... |.+ +++.+.+++...++.    ++.++++++++++.. +..++++||.|++++|.|..+.    .+++..|
T Consensus        66 ~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~----~~~~~~g  141 (394)
T PRK06836         66 LHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYR----FYVDNHG  141 (394)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcC
Confidence            4567665 776 788888888765433    345555555699875 5557899999999999999875    4556789


Q ss_pred             cEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHH------cCCEEEEeCCCCCCCc
Q 016612          119 VVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA------HGALLLVDNSIMSPVL  183 (386)
Q Consensus       119 ~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~------~~~~li~D~a~~~~~~  183 (386)
                      ++++.++.+      |+++++++++++++++++++|+||||.+.+   +++|+++|++      ||+++|+|++|..-.+
T Consensus       142 ~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~  221 (394)
T PRK06836        142 GKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY  221 (394)
T ss_pred             CEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccc
Confidence            999888763      689999999889999999999999999987   6778888998      8999999999863222


Q ss_pred             c-----C-CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHH------HHHhhhhcC-CCCChhhHHHHHhcCCcH
Q 016612          184 S-----R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE------LYFLQNAEG-SGLAPFDCWICLRGVKTM  250 (386)
Q Consensus       184 ~-----~-~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~  250 (386)
                      .     . ....+.+++++|+||.+ |.+|+|+||++++++ +.+.      +.......+ ...+...+.++...+...
T Consensus       222 ~~~~~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  299 (394)
T PRK06836        222 DGAEVPYIFKYYDNSIVVYSFSKSL-SLPGERIGYIAVNPE-MEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT  299 (394)
T ss_pred             CCCCCCChHHccCcEEEEecchhhc-cCcceeeEEEecCHH-HhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh
Confidence            1     1 11235689999999999 555799999998744 3221      111112112 234444555554444432


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCC
Q 016612          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  330 (386)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~  330 (386)
                       .....+.++.+.+.+.|++..         +.      +.  . +..+.++++.++.. ....+.+.+...|+.+.+|.
T Consensus       300 -~~~~~~~~~r~~l~~~L~~~g---------~~------~~--~-~~gg~~~~~~~~~~-~~~~~~~~l~~~gv~v~~g~  359 (394)
T PRK06836        300 -VDVSIYKRNRDLLYDGLTELG---------FE------CV--K-PQGAFYLFPKSPEE-DDVAFCEKAKKHNLLLVPGS  359 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHhCC---------CE------ee--c-CCceEEEEEeCCCC-CHHHHHHHHHhCCEEEECch
Confidence             223445555555666665431         11      10  1 11244555556543 35566677777888887776


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      .+.                       ..+++||+++.  +.+++.++.|+++++++
T Consensus       360 ~f~-----------------------~~~~iRi~~~~~~~~~~~~i~~l~~~l~~~  392 (394)
T PRK06836        360 GFG-----------------------CPGYFRLSYCVDTETIERSLPAFEKLAKEY  392 (394)
T ss_pred             hcC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            421                       14679999973  55566677778777653

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=1.1e-26  Score=216.15  Aligned_cols=282  Identities=18%  Similarity=0.211  Sum_probs=188.9

Q ss_pred             CccccCCCCchHHHHHHHHHhhcCCC--ceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEE
Q 016612           46 PYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (386)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~  121 (386)
                      ...|.+.|   ..++++.+++++|.+  +.|++++|+ +++..+ ..++++||+|++++|+|..+.    ..++..|+++
T Consensus        57 ~~~Y~~~~---~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~  129 (356)
T PRK04870         57 LNRYPDPR---AAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYR----MSAKLAGLEF  129 (356)
T ss_pred             cccCCCCC---HHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHH----HHHHHcCCEE
Confidence            34565433   356777777777764  367777776 778755 456799999999999998774    5677889999


Q ss_pred             EEeCCC-----CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----CCCCCCc
Q 016612          122 KRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGA  191 (386)
Q Consensus       122 ~~v~~~-----d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----~~~~~~~  191 (386)
                      +.++.+     |++++++.+. .+++++++++|+||||.+.+.+++.++++..++++|+||+|..-...    .....+.
T Consensus       130 ~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  209 (356)
T PRK04870        130 VGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPN  209 (356)
T ss_pred             EEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCC
Confidence            998764     7899999886 58999999999999999999888888887768899999998532111    1112346


Q ss_pred             cEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHH
Q 016612          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       192 di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l  268 (386)
                      .+++.|+|| + +.+|+|+||++++ +++.+.+.....  ....+...+.++...++.   +....+...++.+.+.+.+
T Consensus       210 vi~~~S~SK-~-~~~GlRiG~~i~~-~~~i~~~~~~~~--~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L  284 (356)
T PRK04870        210 LLVMRTVSK-L-GLAGLRLGYLAGH-PAWIAELDKVRP--PYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAAL  284 (356)
T ss_pred             EEEEecchh-h-hhHHHhhhhhhCC-HHHHHHHHHccC--CCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999 6 6678999999987 445554544332  233444444444444332   2222333344444444444


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCH
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  348 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~  348 (386)
                      ++.+              ++.+.    +..++++++.+++   ...+.+.+...|+.+.+|..+.               
T Consensus       285 ~~~~--------------~~~~~----~~~~~~~~~~~~~---~~~~~~~l~~~gI~v~~~~~f~---------------  328 (356)
T PRK04870        285 AALP--------------GVTVF----PSAANFILVRVPD---AAAVFDGLKTRGVLVKNLSGMH---------------  328 (356)
T ss_pred             HhCC--------------CcEEC----CCCCeEEEEECCC---HHHHHHHHHHCCEEEEECCCCC---------------
Confidence            4322              21111    2246788888863   3566777777888877665421               


Q ss_pred             HHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 016612          349 EVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  381 (386)
Q Consensus       349 ~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  381 (386)
                            +..++++|||++. ++++.+++.|+++|
T Consensus       329 ------~~~~~~iRis~~~~~~~~~l~~al~~~~  356 (356)
T PRK04870        329 ------PLLANCLRVTVGTPEENAQFLAALKAAL  356 (356)
T ss_pred             ------CCCCCeEEEeCCCHHHHHHHHHHHHHhC
Confidence                  1125789999984 77777777776643

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=4.9e-26  Score=211.53  Aligned_cols=267  Identities=18%  Similarity=0.259  Sum_probs=184.4

Q ss_pred             HHHHHHHHhhcCCC-ceEEeCcHH-HHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----CHH
Q 016612           58 DALESLLAKLDKAD-RALCFTSGM-AALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLD  130 (386)
Q Consensus        58 ~~l~~~l~~~~g~~-~~i~~~~gt-~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~  130 (386)
                      .++++.++++++.+ +.|++++|+ +++.. +..++++||+|++++|+|+.+.    ..++..|.+++.++.+    |++
T Consensus        67 ~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~d~~  142 (366)
T PRK01533         67 TTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYR----HHAIIEGCEVKEVALNNGVYDLD  142 (366)
T ss_pred             HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCEEEEeecCCCCcCHH
Confidence            35666666677766 566666665 88874 4557899999999999998886    4456789999988864    799


Q ss_pred             HHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHH---HHcCCEEEEeCCCCCCCcc----C----CCCCCccEEEeccc
Q 016612          131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA---HAHGALLLVDNSIMSPVLS----R----PLELGADIVMHSAT  199 (386)
Q Consensus       131 ~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la---~~~~~~li~D~a~~~~~~~----~----~~~~~~di~~~S~s  199 (386)
                      ++++.++++++++++++||||||.+.+.+++.+++   ++++ ++|+||+|......    .    ....+..+++.|||
T Consensus       143 ~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfS  221 (366)
T PRK01533        143 EISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFS  221 (366)
T ss_pred             HHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCch
Confidence            99998888999999999999999999866555554   4544 67789998521111    1    11235679999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH---HHHHHHHHHHHHHHHHhhCCCcce
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLASHPRVKK  276 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~  276 (386)
                      |.+ |.+|+|+||++++ +++.+.+.....  ....+...+.++...++.-..   ..+...++.+.+...++..     
T Consensus       222 K~~-~l~GlRiG~~i~~-~~~~~~l~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~-----  292 (366)
T PRK01533        222 KAY-GLASFRVGYAVGH-EELIEKLNVVRL--PFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN-----  292 (366)
T ss_pred             HHh-cChHHHHhHHhCC-HHHHHHHHHhcC--CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence            999 5568999999986 556665654432  356677777777666654211   1222223333333333322     


Q ss_pred             EecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          277 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       277 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                          +++      ++    .+.++++++.+++   ...+.+.+...|+.++.  +                         
T Consensus       293 ----g~~------~~----~~~~nf~~~~~~~---~~~~~~~l~~~GI~Vr~--~-------------------------  328 (366)
T PRK01533        293 ----EIP------FY----QSQTNFIFLPVEN---GGEIYEACAHAGFIIRP--F-------------------------  328 (366)
T ss_pred             ----CCc------cC----CCcCcEEEEeCCC---HHHHHHHHHHCCcEEcc--C-------------------------
Confidence                111      11    3357889998853   34677777778887764  1                         


Q ss_pred             CCCeEEEEec-cCChHHHHHHHHHHHhc
Q 016612          357 TEDLVRISVG-IEDVNDLISDLDKALRT  383 (386)
Q Consensus       357 ~~~~iRis~~-~~~~~~~i~~l~~~l~~  383 (386)
                       ++++|||++ .++++.+++.|++.++.
T Consensus       329 -~~~iRis~~~~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        329 -PNGVRITVGTREQNEGVISVLQQHFEN  355 (366)
T ss_pred             -CCceEEeCCCHHHHHHHHHHHHHHHHh
Confidence             245999997 59999999999988753

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=3.4e-26  Score=213.14  Aligned_cols=273  Identities=20%  Similarity=0.259  Sum_probs=185.2

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----C
Q 016612           56 TRDALESLLAKLDKAD-RALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----D  128 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d  128 (386)
                      ...++++.++++++.+ +.+++++|+ +++..+ .+++++||.|++++|+|+.+.    ..+...|.+++.++..    |
T Consensus        65 g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~d  140 (359)
T PRK03158         65 YAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYR----HNAIIEGAEVREVPLKDGGHD  140 (359)
T ss_pred             cHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEEecCCCCcC
Confidence            3456777777777765 455566565 888754 457899999999999998875    3445678888888764    7


Q ss_pred             HHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHH--cCCEEEEeCCCCCCCcc----CC----CCCCccEEEecc
Q 016612          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS----RP----LELGADIVMHSA  198 (386)
Q Consensus       129 ~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~~~~li~D~a~~~~~~~----~~----~~~~~di~~~S~  198 (386)
                      ++++++.++++++++++++|+||||.+.+.++|.++++.  +|+++|+||+|......    ..    ...+.++++.|+
T Consensus       141 ~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~  220 (359)
T PRK03158        141 LEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTF  220 (359)
T ss_pred             HHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEec
Confidence            889998888899999999999999999999998888887  59999999998643221    11    123568999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH---HHHHHHHHHHHHHHHHhhCCCcc
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLASHPRVK  275 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~  275 (386)
                      ||.+ |.+|+|+||+++++ ++.+.+......  ...+...+.++...+..-..   ..+...++.+.+.+.+++.    
T Consensus       221 SK~~-g~~GlRiG~~v~~~-~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----  292 (359)
T PRK03158        221 SKAY-GLAALRVGYGIASE-ELIEKLNIARPP--FNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY----  292 (359)
T ss_pred             hHhh-cCcchhhehhcCCH-HHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence            9999 55689999999874 455555444332  34566666666665543211   1112222233333333322    


Q ss_pred             eEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcC
Q 016612          276 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  355 (386)
Q Consensus       276 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~  355 (386)
                           ++      .++    +..+.++++.++.  ...++.+.+...|+.+.+|..+.                      
T Consensus       293 -----~~------~~~----~~~g~~i~~~~~~--~~~~~~~~l~~~gv~v~~g~~f~----------------------  333 (359)
T PRK03158        293 -----GL------FYY----PSQTNFIFVDTGR--DANELFEALLKKGYIVRSGAALG----------------------  333 (359)
T ss_pred             -----CC------eeC----CCcCcEEEEECCC--CHHHHHHHHHHCCeEEeeCCCCC----------------------
Confidence                 11      111    2235677777642  24566666666788888776421                      


Q ss_pred             CCCCeEEEEec-cCChHHHHHHHHHH
Q 016612          356 LTEDLVRISVG-IEDVNDLISDLDKA  380 (386)
Q Consensus       356 ~~~~~iRis~~-~~~~~~~i~~l~~~  380 (386)
                       .++++||+++ .++++++++.|++.
T Consensus       334 -~~~~iRi~~~~~~~~~~l~~al~~~  358 (359)
T PRK03158        334 -FPTGVRITIGLKEQNDKIIELLKEL  358 (359)
T ss_pred             -CCCeEEEecCCHHHHHHHHHHHHHh
Confidence             1467999997 47788888888765

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.95  E-value=7e-26  Score=208.15  Aligned_cols=262  Identities=19%  Similarity=0.194  Sum_probs=180.0

Q ss_pred             CCchHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHH
Q 016612           53 GNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD  130 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~  130 (386)
                      +.+...++++.+++++|.+ +.+++++|+ +++.++..++.+| .|++++|+|..+.    ..++..|++++.++  |++
T Consensus        45 ~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~~g-~vl~~~p~y~~~~----~~~~~~g~~~~~~~--d~~  117 (330)
T TIGR01140        45 PDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLAPG-RVLVLAPTYSEYA----RAWRAAGHEVVELP--DLD  117 (330)
T ss_pred             CCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCCC-eEEEeCCCcHHHH----HHHHHcCCEEEEeC--CHH
Confidence            3333478888888888875 566677776 7888777778888 6999999998875    45568899999988  899


Q ss_pred             HHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-CCC----CCCccEEEecccccc
Q 016612          131 EVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPL----ELGADIVMHSATKFI  202 (386)
Q Consensus       131 ~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-~~~----~~~~di~~~S~sK~~  202 (386)
                      ++++.+ ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|...... +..    ..+.++++.|+||++
T Consensus       118 ~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  196 (330)
T TIGR01140       118 RLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFF  196 (330)
T ss_pred             HHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhh
Confidence            999888 46889999999999999998   777888999999999999998633322 111    135679999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEec
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNY  279 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  279 (386)
                       |.+|+|+||+++++ ++.+.+.....  ....+.+.+.++...++.-   ....+.+.++.+.+.+.+++.+.      
T Consensus       197 -g~~G~R~G~i~~~~-~~~~~l~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------  266 (330)
T TIGR01140       197 -GLAGLRLGFVVAHP-ALLARLREALG--PWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGG------  266 (330)
T ss_pred             -cCchhhhhheeCCH-HHHHHHHhcCC--CCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCC------
Confidence             55689999999875 45555554432  2344555555554444421   22234444555555555554421      


Q ss_pred             CCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCC
Q 016612          280 AGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  359 (386)
Q Consensus       280 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  359 (386)
                        +      .+.    +..+.++++.+++   ..++.+.+...|+.+.+|..+.                     +...+
T Consensus       267 --~------~~~----~~~~~f~~~~~~~---~~~l~~~l~~~gi~v~pg~~f~---------------------~~~~~  310 (330)
T TIGR01140       267 --L------EVV----GGTALFLLVRTPD---AAALHEALARRGILIRDFDNFP---------------------GLDPR  310 (330)
T ss_pred             --c------eEC----CCCCeEEEEEcCC---HHHHHHHHHHCCEEEEECCCCC---------------------CCCCC
Confidence              1      110    1235677777654   3456666666788877776531                     12356


Q ss_pred             eEEEEeccC
Q 016612          360 LVRISVGIE  368 (386)
Q Consensus       360 ~iRis~~~~  368 (386)
                      +|||+++..
T Consensus       311 ~iRi~~~~~  319 (330)
T TIGR01140       311 YLRFALPTD  319 (330)
T ss_pred             EEEEEecCH
Confidence            899999853

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=6.7e-26  Score=211.86  Aligned_cols=284  Identities=15%  Similarity=0.170  Sum_probs=184.8

Q ss_pred             ccccCCCCc-hHHHHHHHHHhhcC----CC-ceEEeCcHH-HHHH-HHHHhcCCCC-EEEecCCCCCcHHHHHhhhcccC
Q 016612           47 YDYTRSGNP-TRDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGE-EIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        47 ~~y~~~g~~-~~~~l~~~l~~~~g----~~-~~i~~~~gt-~al~-~~~~~~~~g~-~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ..|...|.+ +|+++.+++.+.++    .+ +.|++++|+ +++. ++.+++.+|| .|++++|+|+.+.    .+++..
T Consensus        61 ~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~----~~~~~~  136 (374)
T PRK02610         61 NRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYG----ILAQTL  136 (374)
T ss_pred             cCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHH----HHHHHc
Confidence            356544665 67777777766542    33 456666665 8886 4566777886 8999999998885    566788


Q ss_pred             CcEEEEeCCC------CHHHHHhhhC----CCceEEEEeCCCCCCcccccHHHHHHHHHH-cCCEEEEeCCCCCCCcc--
Q 016612          118 GVVVKRVNTC------DLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLS--  184 (386)
Q Consensus       118 g~~~~~v~~~------d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~-~~~~li~D~a~~~~~~~--  184 (386)
                      |++++.++.+      |+++++++++    +++++|++++||||||.+.+.+++.++++- ++++||+||+|..-...  
T Consensus       137 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~  216 (374)
T PRK02610        137 GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTL  216 (374)
T ss_pred             CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccch
Confidence            9999888753      6888988876    489999999999999999986665555432 48999999998632211  


Q ss_pred             --CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHH---HHHH
Q 016612          185 --RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE---KQQD  259 (386)
Q Consensus       185 --~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  259 (386)
                        ........+++.||||.+ |.+|+|+||++++ +.+.+.+.....  ..+.+...+.++...+.......+   ...+
T Consensus       217 ~~~~~~~~~~ivi~SfSK~~-g~~GlRiG~~v~~-~~l~~~l~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~  292 (374)
T PRK02610        217 VGELAQHPNWVILRTFSKAF-RLAAHRVGYAIGH-PELIAVLEKVRL--PYNLPSFSQLAAQLALEHRQELLAAIPEILQ  292 (374)
T ss_pred             HHHHhcCCCEEEEEecchhc-cCcccceeeeecC-HHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence              111123468899999999 5568999999986 556555554442  234455555555555543322221   1222


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~  339 (386)
                      ....+.+.+++              +++..++    +..+.++++.++.......+.+.+...|+.++.           
T Consensus       293 ~r~~l~~~L~~--------------~~~~~~~----p~~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~-----------  343 (374)
T PRK02610        293 ERDRLYQALQE--------------LPQLRVW----PSAANFLYLRLSQDAALAALHQALKAQGTLVRH-----------  343 (374)
T ss_pred             HHHHHHHHHHh--------------CCCcEeC----CCcceEEEEeCCCCCCHHHHHHHHHHCCEEEEe-----------
Confidence            22222233322              2222211    224677888875433456677777777776542           


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhcC
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRTG  384 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~~  384 (386)
                                       .++++|||++. +++++.++.|+++++++
T Consensus       344 -----------------~~~~lRls~~~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        344 -----------------TGGGLRITIGTPEENQRTLERLQAALTQL  372 (374)
T ss_pred             -----------------CCCeEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence                             13569999974 66788999999888765

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.95  E-value=1.2e-25  Score=206.60  Aligned_cols=265  Identities=20%  Similarity=0.188  Sum_probs=176.9

Q ss_pred             HHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC
Q 016612           58 DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG  137 (386)
Q Consensus        58 ~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~  137 (386)
                      ..+++.+++++|.++.++++++.+++..+. .+.+||+|++++|+|+.+.    ..++..|++++.++.+   ++++.+ 
T Consensus        52 ~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~-~~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~---~~~~~~-  122 (330)
T PRK05664         52 DGLEAAARAYYGAPQLLPVAGSQAAIQALP-RLRAPGRVGVLSPCYAEHA----HAWRRAGHQVRELDEA---EVEAAL-  122 (330)
T ss_pred             HHHHHHHHHHhCCCCEEECcCHHHHHHHHH-HccCCCEEEEcCCChHHHH----HHHHHcCCeEEEechh---hHhhhh-
Confidence            678888899899876555554458887664 4689999999999999885    6667889999999864   455555 


Q ss_pred             CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc----cCCCCCCccEEEeccccccccCCCceE
Q 016612          138 PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL----SRPLELGADIVMHSATKFIAGHSDVMA  210 (386)
Q Consensus       138 ~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~----~~~~~~~~di~~~S~sK~~~g~~g~~~  210 (386)
                      ++++++++++|+||||.+.+   +++|.++|+++|++||+||+|.....    ......+..+++.||||.+ |.+|+|+
T Consensus       123 ~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~-gl~GlRi  201 (330)
T PRK05664        123 DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFF-GLAGARL  201 (330)
T ss_pred             cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccc-cCCCcce
Confidence            36889999999999999987   56677778899999999999863321    1111224569999999999 5568999


Q ss_pred             EEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCc
Q 016612          211 GVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  287 (386)
Q Consensus       211 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  287 (386)
                      ||++++ +.+.+.+.....  ....+...+.++...+...   ......+.++.+.+.+.+++..         +.    
T Consensus       202 G~~v~~-~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~---------~~----  265 (330)
T PRK05664        202 GFVLAE-PALLRALAELLG--PWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHG---------LT----  265 (330)
T ss_pred             EEEEeC-HHHHHHHHHhcC--CCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCC---------Cc----
Confidence            999986 456555544432  2234555555555544332   2223334444455555555431         11    


Q ss_pred             hhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc
Q 016612          288 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  367 (386)
Q Consensus       288 ~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  367 (386)
                            ...+.+.++++..++   ...+.+.+...|+.+....                          .++++|||++.
T Consensus       266 ------~~~~~~~f~~~~~~~---~~~~~~~l~~~gi~v~~f~--------------------------~~~~iRis~~~  310 (330)
T PRK05664        266 ------PAGGCALFQWVRTED---AAALHEFLARRGILTRLFE--------------------------QPASLRFGLPA  310 (330)
T ss_pred             ------ccCCcceEEEEecCC---HHHHHHHHHHCCeEEEECC--------------------------CCCeEEEECCC
Confidence                  012233556666542   4566677777788764200                          13579999984


Q ss_pred             --CChHHHHHHHHHHHhc
Q 016612          368 --EDVNDLISDLDKALRT  383 (386)
Q Consensus       368 --~~~~~~i~~l~~~l~~  383 (386)
                        ++++++++.|++..++
T Consensus       311 ~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        311 DEADWARLDQALLAYRKE  328 (330)
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence              5688888888776654

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.95  E-value=1e-25  Score=211.47  Aligned_cols=298  Identities=21%  Similarity=0.199  Sum_probs=200.6

Q ss_pred             chHHHHHHHHHhhcCCC---ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~---~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +..+++++.+++++|.+   +.++++++++++. ++.+++++||+|+++.+.|+++...+..+++..|.+++.++.+   
T Consensus        44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  123 (376)
T TIGR01977        44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG  123 (376)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence            46788999999999975   2445556678887 4555789999999999999988766666777779999888753   


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccccc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (386)
                        |+++++++++++++++++++++||||.+.|+++|.++|+++|+++|+|++++.|... +....++|++++|++||+++
T Consensus       124 ~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~  203 (376)
T TIGR01977       124 LISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLG  203 (376)
T ss_pred             CcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccC
Confidence              799999999889999999999999999999999999999999999999999988764 33456899999999999988


Q ss_pred             CCCceEEEEEEcChhHHHHHHHh--hh-------------hcCC-CCChhhHHHHHhcCCcH-----HHHHHHHHHHHHH
Q 016612          205 HSDVMAGVLAVKGERLAKELYFL--QN-------------AEGS-GLAPFDCWICLRGVKTM-----ALRVEKQQDNAQK  263 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~--~~-------------~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  263 (386)
                      |.|  .|+++.+++...+.+...  ..             .... ..+......+..+++.+     ....++..+.++.
T Consensus       204 p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~  281 (376)
T TIGR01977       204 PQG--TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEK  281 (376)
T ss_pred             CCC--ceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            887  566666655321111000  00             0000 11111122222222221     1222333444445


Q ss_pred             HHHHHhhCCCcceEecCCCCCCCchhhhhh-ccCCCCceEEEEeCCHHhHHHHHhhcCcc-eeccCCCCccccccccccc
Q 016612          264 IAEFLASHPRVKKVNYAGLPEHPGHELHYS-QAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       264 l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~~~~G~~~~~~~~p~~~  341 (386)
                      +.+.+.+.+              ++.++.+ ++...+++++|.+++. ..+.+.+.+... ++.++.|...+...++   
T Consensus       282 ~~~~l~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~L~~~~gi~v~~g~~~~~~~~~---  343 (376)
T TIGR01977       282 LLNGLREIN--------------KVKIYGPADPANRVGVVSFTVEGI-DSEEVADILDEKFDIATRTGLHCAPLAHK---  343 (376)
T ss_pred             HHHHHhcCC--------------CeEEeCCCCccccCCeEEEEECCC-CHHHHHHHHhccCCEEEEcccccchHHHH---
Confidence            555554433              2222211 1122467888888654 356777887766 8887777643221111   


Q ss_pred             cCCCCCHHHHHhc-CCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          342 SHASIPVEVRQAR-GLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       342 ~~~~~~~~~~~~~-~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                                 .. ....+.||+|++..++++.++.+.++|++
T Consensus       344 -----------~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       344 -----------TIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             -----------HhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence                       11 12357899999988888888888888765

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.95  E-value=1.6e-25  Score=212.00  Aligned_cols=298  Identities=22%  Similarity=0.257  Sum_probs=193.6

Q ss_pred             hHHHHHHHHHhhcCCC--ceEE-eCcHHHHHHHHHH-----hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKAD--RALC-FTSGMAALAAVTH-----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~-~~~gt~al~~~~~-----~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      ..+++++.+++++|.+  +.++ +++++++++.+..     .+++||+|+++++.|++....+...++..|.+++.++.+
T Consensus        63 ~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~  142 (403)
T TIGR01979        63 AYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD  142 (403)
T ss_pred             HHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC
Confidence            4678889999999976  3454 4445688875433     258899999999999987766777777889999888753


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |++++++.++++++++++++++|+||.+.|+++|.++|+++|+++++|++++.+... +....+.|++++|+||+
T Consensus       143 ~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~  222 (403)
T TIGR01979       143 DDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKM  222 (403)
T ss_pred             CCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccc
Confidence                 789999999999999999999999999999999999999999999999999877653 33446899999999998


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhh--------------------cCCCCCh-hhHHHHHhcCCcHHHH-HHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNA--------------------EGSGLAP-FDCWICLRGVKTMALR-VEKQQD  259 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--------------------~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~  259 (386)
                      + ||.|  +|+++++++ +.+.+......                    ...+... .....+..+++.+... .+...+
T Consensus       223 ~-gp~G--~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~  298 (403)
T TIGR01979       223 Y-GPTG--IGVLYGKEE-LLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEA  298 (403)
T ss_pred             c-CCCC--ceEEEEchH-HHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            7 6777  799988754 43332211100                    0011111 1222222222221110 122333


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhc-cCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ-AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP  338 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p  338 (386)
                      +...+.+++.+          .+..+++.+++.+. +..+++++.|.+++.. ...+.+.+..+|+.++.|....   .|
T Consensus       299 ~~~~l~~~l~~----------~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~L~~~gI~v~~g~~~~---~~  364 (403)
T TIGR01979       299 HEHELTAYALE----------RLGEIPGLRIYGPRDAEDRGGIISFNVEGVH-PHDVGTILDEEGIAVRSGHHCA---QP  364 (403)
T ss_pred             HHHHHHHHHHH----------HHhcCCCEEEeCCCCccccCceEEEEeCCcC-HHHHHHHHhhCCEEEcchhhhh---HH
Confidence            34444444332          12222233333211 1234678888875432 4567778888899888766421   11


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                                 .....+ .++++|||++.    ++++++++.|++.++.
T Consensus       365 -----------~~~~~~-~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~  401 (403)
T TIGR01979       365 -----------LMRRFG-VPATCRASFYIYNTEEDIDALVEALKKVRKF  401 (403)
T ss_pred             -----------HHHHhC-CCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence                       001112 24679999985    5666666666665554

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.95  E-value=2.1e-25  Score=210.94  Aligned_cols=286  Identities=17%  Similarity=0.166  Sum_probs=192.2

Q ss_pred             CCc-hHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHH
Q 016612           53 GNP-TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD  130 (386)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~  130 (386)
                      |.+ +++++++++++++|.++.+++++|++++. ++.+++++||+|++++|.|+++...    ++..+.+++.++..|++
T Consensus        84 G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~  159 (397)
T PRK06939         84 GTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDG----VRLCKAKRYRYANNDMA  159 (397)
T ss_pred             CCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHH----HHhcCCceEEeCCCCHH
Confidence            654 89999999999999888899999987765 5566889999999999999887533    34566777778777899


Q ss_pred             HHHhhhCC------CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC---------CCCCCccEEE
Q 016612          131 EVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVM  195 (386)
Q Consensus       131 ~l~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~---------~~~~~~di~~  195 (386)
                      ++++.+++      ++++|++++.+|++|...++++|.++|+++|+++|+||+|+.+....         ....+.|+++
T Consensus       160 ~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~  239 (397)
T PRK06939        160 DLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIIT  239 (397)
T ss_pred             HHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEE
Confidence            88887753      78888888899999999999999999999999999999996543221         1112568999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHhhhh--cCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhh
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~  270 (386)
                      +|+||+++|+   |+||+++++ .+.+.+......  .+....+..+.++..+++.+   ....++..++.+.+.+.+++
T Consensus       240 ~S~sK~~~g~---r~G~v~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~  315 (397)
T PRK06939        240 GTLGKALGGA---SGGYTAGRK-EVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTA  315 (397)
T ss_pred             EECHHHhCcc---CceEEEeCH-HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999542   689999874 455545432221  12222333233322222221   23334455555555566554


Q ss_pred             CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHH
Q 016612          271 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  350 (386)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~  350 (386)
                      ..         ++..          .+.++++.+.+++.....++.+.+...|+.+..+.+      +..          
T Consensus       316 ~~---------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~~------~~~----------  360 (397)
T PRK06939        316 AG---------FTLG----------PGEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSF------PVV----------  360 (397)
T ss_pred             cC---------CCcC----------CCCCCEEEEEECCHHHHHHHHHHHHHCCceEeeeCC------CCC----------
Confidence            31         1111          123456666665444466777777777776553211      100          


Q ss_pred             HHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcCC
Q 016612          351 RQARGLTEDLVRISVGI----EDVNDLISDLDKALRTGP  385 (386)
Q Consensus       351 ~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~~  385 (386)
                          +.+.++||++++.    +++++.++.|++++++.+
T Consensus       361 ----~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~~  395 (397)
T PRK06939        361 ----PKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELG  395 (397)
T ss_pred             ----CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence                1124579999854    778888888888887654

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.95  E-value=3.5e-25  Score=206.59  Aligned_cols=268  Identities=21%  Similarity=0.261  Sum_probs=176.0

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC---C-ceEEeCcHH-HHHHHH-HHh-cCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA---D-RALCFTSGM-AALAAV-THL-LGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~---~-~~i~~~~gt-~al~~~-~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ..|... |.+ +++++.+++.+.+|.   + +.|++++|+ +++..+ ..+ +++||.|++++|.|+.+.    ..++..
T Consensus        56 ~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~~  131 (364)
T PRK07865         56 PGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYE----VGARLA  131 (364)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHH----HHHHhc
Confidence            368876 876 899999999877653   2 466666665 888765 445 689999999999999885    445678


Q ss_pred             CcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----C---C-
Q 016612          118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R---P-  186 (386)
Q Consensus       118 g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~---~-  186 (386)
                      |++++.++  +.+++.   .+++++|++++|+||||.+.+   +++|.++|+++|++||+||+|....+.    .   + 
T Consensus       132 g~~~~~~~--~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  206 (364)
T PRK07865        132 GATVVRAD--SLTELG---PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPR  206 (364)
T ss_pred             CCEEEecC--ChhhCC---cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCcccccc
Confidence            88888875  334433   267899999999999999986   678899999999999999998732211    0   1 


Q ss_pred             ---CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHH
Q 016612          187 ---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDN  260 (386)
Q Consensus       187 ---~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  260 (386)
                         ...+..++++|+||.+ +.+|+|+||++++ +++.+.+.......+...+...+.++...+..   .......+.++
T Consensus       207 ~~~~~~~~~i~~~S~SK~~-~~~GlRiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  284 (364)
T PRK07865        207 VCGGDHTGLLAVHSLSKQS-NLAGYRAGFVAGD-PALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARR  284 (364)
T ss_pred             ccCCccceEEEEeechhcc-CCCceeeEEEecC-HHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence               0124579999999999 4568999999886 55666665555444455566666665555543   12222333344


Q ss_pred             HHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccc
Q 016612          261 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       261 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~  339 (386)
                      .+.+.+.+++..         +      .+.    ...++ ++++.++.  ....+.+.+...|+.+.+|..+.    + 
T Consensus       285 ~~~l~~~L~~~g---------~------~~~----~~~~~~~~~~~~~~--~~~~~~~~l~~~gv~v~pg~~f~----~-  338 (364)
T PRK07865        285 RAVLRPALEAAG---------F------RVD----HSEAGLYLWATRGE--DCWDTVAWLAERGILVAPGDFYG----P-  338 (364)
T ss_pred             HHHHHHHHHHcC---------C------ccc----CCCccEEEEEeCCC--CHHHHHHHHHHCCEEEeCccccC----c-
Confidence            444444444321         1      111    12334 45555432  13445566666788877765421    0 


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEecc
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVGI  367 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~~  367 (386)
                                      ..++++||+++.
T Consensus       339 ----------------~~~~~iRi~~~~  350 (364)
T PRK07865        339 ----------------AGAQHVRVALTA  350 (364)
T ss_pred             ----------------CCCCEEEEEecC
Confidence                            025789999975

>PRK09105 putative aminotransferase; Provisional

Probab=99.95  E-value=7.9e-26  Score=210.60  Aligned_cols=270  Identities=18%  Similarity=0.237  Sum_probs=175.6

Q ss_pred             HHHHHHHHHhhcCCC-ceEEeCcH-HHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----C
Q 016612           57 RDALESLLAKLDKAD-RALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D  128 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~g-t~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d  128 (386)
                      ..++++.+++++|.+ +.|++++| ++++.. +.+++++||.|++++|+|+.+.    ..++..|.+++.++.+     |
T Consensus        80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d  155 (370)
T PRK09105         80 EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGW----RAADAQGAPVAKVPLRADGAHD  155 (370)
T ss_pred             HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEecCCCCCCCC
Confidence            567777788888766 45555555 588874 4557899999999999998885    5566889999888763     6


Q ss_pred             HHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHH--cCCEEEEeCCCCCCC-ccCCC----CCCccEEEeccccc
Q 016612          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPL----ELGADIVMHSATKF  201 (386)
Q Consensus       129 ~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~~~~li~D~a~~~~~-~~~~~----~~~~di~~~S~sK~  201 (386)
                      ++++++. .++++++++++|+||||.+.+.+++.++++.  +++++|+||+|.... .....    .....+++.|+||.
T Consensus       156 ~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~  234 (370)
T PRK09105        156 VKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKL  234 (370)
T ss_pred             HHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHh
Confidence            7888776 5678999999999999999998888777754  489999999985211 11111    12356889999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEe
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVN  278 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~  278 (386)
                      + |.+|+|+||++++ +.+.+.+...   .....+...+.++...+...   ....+.+.++.+.+.+.|++..      
T Consensus       235 ~-g~~GlRiG~~v~~-~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g------  303 (370)
T PRK09105        235 Y-GMAGMRLGLAAAR-PDLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKKG------  303 (370)
T ss_pred             h-cCCccceeeeecC-HHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC------
Confidence            9 6678999999986 4455545443   22234444444444444321   2222333344444444444321      


Q ss_pred             cCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCC
Q 016612          279 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  358 (386)
Q Consensus       279 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  358 (386)
                         +      .+.    ...++++.+.++.  ...++.+.+...|+.++  ..+     +                 ..+
T Consensus       304 ---~------~~~----~~~~~f~~~~~~~--~~~~l~~~L~~~gI~v~--~~~-----~-----------------~~~  344 (370)
T PRK09105        304 ---Y------KCT----PSQANCFMVDVKR--PAKAVADAMAKQGVFIG--RSW-----P-----------------IWP  344 (370)
T ss_pred             ---C------CcC----CCCCcEEEEeCCC--CHHHHHHHHHHCCcEEe--cCC-----C-----------------CCC
Confidence               1      111    2245667666642  23456666655566552  110     0                 025


Q ss_pred             CeEEEEecc-CChHHHHHHHHHHH
Q 016612          359 DLVRISVGI-EDVNDLISDLDKAL  381 (386)
Q Consensus       359 ~~iRis~~~-~~~~~~i~~l~~~l  381 (386)
                      +++||+++. ++++.+++.|++.+
T Consensus       345 ~~~Ris~~~~~~~~~l~~al~~~~  368 (370)
T PRK09105        345 NWVRVTVGSEEEMAAFRSAFAKVM  368 (370)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHHHh
Confidence            689999985 56788888887765

>PLN02483 serine palmitoyltransferase

Probab=99.95  E-value=2.5e-25  Score=213.25  Aligned_cols=327  Identities=16%  Similarity=0.176  Sum_probs=212.6

Q ss_pred             CccceeeccCCCCCCCCCccc-ceeeeeeeecCCCCCCC-CccccC--CCC-chHHHHHHHHHhhcCCCceEEeCcHHHH
Q 016612            8 GVSTLLMNFSNEFDPYGALST-PLYQTATFKQPSATENG-PYDYTR--SGN-PTRDALESLLAKLDKADRALCFTSGMAA   82 (386)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~y~~--~g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~a   82 (386)
                      +...+++|++ +++|+|...+ +..... . ...+...+ ...-++  .|. +...++|+.+++++|.++.+++++|+.+
T Consensus        97 ~~~~~~~n~~-s~~YLgl~~~~~~~~~~-~-~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~a  173 (489)
T PLN02483         97 TKTRRCLNLG-SYNYLGFAAADEYCTPR-V-IESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYAT  173 (489)
T ss_pred             CCCceEEEee-cCCccCcCCCCHHHHHH-H-HHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHH
Confidence            4467899999 9999999843 211110 0 10111111 111233  343 5899999999999999999999999866


Q ss_pred             H-HHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC-------CCc-----e-EEEEeCC
Q 016612           83 L-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-------PWT-----K-LVWVESP  148 (386)
Q Consensus        83 l-~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~-------~~~-----~-~v~~~~~  148 (386)
                      . .++.+++++||.|+++++.|++..    ..++..|++++.++..|.+++++.+.       +++     + +|++++.
T Consensus       174 n~~~i~al~~~Gd~Vi~d~~~h~s~~----~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v  249 (489)
T PLN02483        174 NSTIIPALIGKGGLIISDSLNHNSIV----NGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGI  249 (489)
T ss_pred             HHHHHHHhCCCCCEEEEcchhhHHHH----HHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCC
Confidence            5 456678999999999999999875    44567899999999888888876553       222     4 5556688


Q ss_pred             CCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----------CCCCCCccEEEeccccccccCCCceEEEEEEcCh
Q 016612          149 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       149 ~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      .|++|.+.++++|.++|+++|+++|+||+|+.+...          .....+.|++++|+||++++ .   +||++++ +
T Consensus       250 ~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~---GG~i~~~-~  324 (489)
T PLN02483        250 YSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-C---GGYIAGS-K  324 (489)
T ss_pred             CCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-C---ceEEEcC-H
Confidence            899999999999999999999999999999755421          11123679999999999954 3   5999876 4


Q ss_pred             hHHHHHHHhhhh--cCCCCChhhHHHHHhcCC---------cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCc
Q 016612          219 RLAKELYFLQNA--EGSGLAPFDCWICLRGVK---------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  287 (386)
Q Consensus       219 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  287 (386)
                      ++.+.+......  .+...++.....+..+++         ....+.+++.++.+.+.+.|++..         +     
T Consensus       325 ~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G---------~-----  390 (489)
T PLN02483        325 ELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMG---------F-----  390 (489)
T ss_pred             HHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCC---------C-----
Confidence            566655543221  222333333322223221         123345566677777777776542         1     


Q ss_pred             hhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc
Q 016612          288 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  367 (386)
Q Consensus       288 ~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  367 (386)
                       .++.   ...++++++.+.+......+.+.+...|+.+.+..      +|+.              ....+.+|++++.
T Consensus       391 -~v~~---~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~------fp~~--------------p~~~~~vRi~isa  446 (489)
T PLN02483        391 -EVLG---DNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVG------FPAT--------------PLLLARARICISA  446 (489)
T ss_pred             -cccC---CCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeC------CCCC--------------CCCCceEEEEeCC
Confidence             1110   11245666666554445567777766777655311      1211              1124569999974


Q ss_pred             ----CChHHHHHHHHHHHhcC
Q 016612          368 ----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       368 ----~~~~~~i~~l~~~l~~~  384 (386)
                          ++++++++.|.++++..
T Consensus       447 ~~t~edId~~l~~L~~~~~~~  467 (489)
T PLN02483        447 SHSREDLIKALEVISEVGDLV  467 (489)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh
Confidence                77777778887776654

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.95  E-value=2.8e-25  Score=202.35  Aligned_cols=323  Identities=22%  Similarity=0.192  Sum_probs=234.3

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCC-CCCccccCC--CC-chHHHHHHHHHhhcCCCceEEeCcHHHHH-HH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-NGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA   85 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al-~~   85 (386)
                      .+++|++ +|||+|...-|.+.......  +.. .....-++.  |+ +...++|+.+++++|.+.+++++||..|. .+
T Consensus        39 ~~~~nf~-SNdYLGLa~~~~~~~a~~~~--~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~  115 (388)
T COG0156          39 RKVLNFC-SNDYLGLASHPELIEAAKAA--IRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGL  115 (388)
T ss_pred             ceeEeee-ccCcccccCCHHHHHHHHHH--HHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHH
Confidence            5689999 99999999888644222111  111 112223442  66 58999999999999999999999998665 57


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCC------CceEEEEeCCCCCCcccccHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDIR  159 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l~  159 (386)
                      +.++++++|.|+.....|-+..    .-++..+.+++.+...|+++|++.+.+      +.++|+++.+..+.|.+.|++
T Consensus       116 i~~l~~~~dli~~D~lnHASii----dG~rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~  191 (388)
T COG0156         116 LSALLKKGDLIFSDELNHASII----DGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLP  191 (388)
T ss_pred             HHHhcCCCcEEEEechhhhhHH----HHHHhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHH
Confidence            7778999999999988997764    445577889999999999999999864      358888999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCCCCCCccCCC----------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh
Q 016612          160 KIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a~~~~~~~~~~----------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~  229 (386)
                      +|++++++|+.++++||+|+.|.+....          ....||+++|++|.+++    .+|++.++ ..+.+.+.....
T Consensus       192 ~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs----~Gg~v~g~-~~~~d~L~~~ar  266 (388)
T COG0156         192 ELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS----SGGYIAGS-AALIDYLRNRAR  266 (388)
T ss_pred             HHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc----cCceeeCc-HHHHHHHHHhCC
Confidence            9999999999999999999988775211          12348999999999954    26888876 556555544322


Q ss_pred             --hcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE
Q 016612          230 --AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  304 (386)
Q Consensus       230 --~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~  304 (386)
                        .+.+.++|....+...+++.   ...++++++++...+...+....         +...          ...++++.+
T Consensus       267 ~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~---------~~~~----------~s~s~I~pv  327 (388)
T COG0156         267 PFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALG---------LVLL----------PSESPIIPV  327 (388)
T ss_pred             ceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---------CccC----------CCCCCeeee
Confidence              34567777776666555443   34555666666666554433321         1111          335788999


Q ss_pred             EeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          305 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       305 ~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      .+.++..+.++.+.+...|+.+..      +.+|..              ..+...+|++++..++++.|+.+.++|.+.
T Consensus       328 ~~gd~~~a~~~s~~l~~~Gi~v~~------i~~PTV--------------p~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         328 ILGDEERALEASRALLEEGIYVSA------IRPPTV--------------PKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             EeCCHHHHHHHHHHHHHCCeeEee------ecCCCC--------------CCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            998877777777777777775443      334422              112456999999988999999999888764

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.95  E-value=2.9e-25  Score=207.81  Aligned_cols=333  Identities=12%  Similarity=0.150  Sum_probs=209.8

Q ss_pred             eccCCCCCCCCCcccceeeeeeee---cCCCCCCC-CccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHH-HHHHHH
Q 016612           14 MNFSNEFDPYGALSTPLYQTATFK---QPSATENG-PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA-LAAVTH   88 (386)
Q Consensus        14 ~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~-~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~a-l~~~~~   88 (386)
                      +|++ +|||+|....|.+......   +......+ ...|++.  ....++|+.+++++|.++.+++++|+.+ +.++.+
T Consensus         1 ~~f~-s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~--~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~   77 (392)
T PLN03227          1 LNFA-THDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTI--DAHLELEQCMAEFLGTESAILYSDGASTTSSTVAA   77 (392)
T ss_pred             CCCc-CcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCCh--HHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHH
Confidence            4788 8999999988865422211   11111111 1113322  3788999999999999999999999855 557778


Q ss_pred             hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHh---hhC-----------CCceEEEEeCCCCCCcc
Q 016612           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS---AIG-----------PWTKLVWVESPTNPRQQ  154 (386)
Q Consensus        89 ~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~---~~~-----------~~~~~v~~~~~~nptG~  154 (386)
                      ++++||+|+++++.|+++...+    ...+.+++.++..|.+++++   .+.           +++++|++++++||+|.
T Consensus        78 l~~~GD~Vl~~~~~h~s~~~~~----~l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~  153 (392)
T PLN03227         78 FAKRGDLLVVDRGVNEALLVGV----SLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGT  153 (392)
T ss_pred             hCCCCCEEEEeccccHHHHHHH----HHcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCc
Confidence            9999999999999998886433    23445777777766665554   332           36889999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCCCCCCccC-----------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHH
Q 016612          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (386)
Q Consensus       155 ~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-----------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~  223 (386)
                      +.|+++|.++|++||+++|+||+++.+....           ....++|+++.|++|.+ |+   ++|+++++ +++.+.
T Consensus       154 i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~---~gg~v~~~-~~~~~~  228 (392)
T PLN03227        154 LAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GS---VGGMTVGS-EEVVDH  228 (392)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hc---cCcEEecC-HHHHHH
Confidence            9999999999999999999999998554321           11236799999999987 43   35888776 445544


Q ss_pred             HHHhh--hhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCch-hhhhhccCC
Q 016612          224 LYFLQ--NAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH-ELHYSQAKG  297 (386)
Q Consensus       224 ~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~-~i~~~~~~~  297 (386)
                      ++...  ..++..+++..+++...++..   ...+.++..++.+.+.+.+++..      .+.+.+..+. .+.   ...
T Consensus       229 ~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~------~~~~~~~rg~~~~~---~~~  299 (392)
T PLN03227        229 QRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSS------HPYALKLRNRLVIT---SDP  299 (392)
T ss_pred             HHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC------CccccccccccccC---CCC
Confidence            43322  223334445444444433322   23455666677777777776421      1111111110 011   123


Q ss_pred             CCceEEEEeCCHHh---------HHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc-
Q 016612          298 AGSVLSFLTGSLAL---------SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-  367 (386)
Q Consensus       298 ~~~~~~~~~~~~~~---------~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-  367 (386)
                      .++++.+.+.+...         ...+.+.+..+|+.+...........|                ..++..+|++++. 
T Consensus       300 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~----------------~~P~~~iR~~~~~~  363 (392)
T PLN03227        300 ISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQ----------------LVPPPCLRVVANAS  363 (392)
T ss_pred             CCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCC----------------CCCCceEEEEecCC
Confidence            57889998855322         246777777777765321111100011                1124559999975 


Q ss_pred             ---CChHHHHHHHHHHHhc
Q 016612          368 ---EDVNDLISDLDKALRT  383 (386)
Q Consensus       368 ---~~~~~~i~~l~~~l~~  383 (386)
                         ++++++++.|++++++
T Consensus       364 ~t~eei~~~~~~l~~~~~~  382 (392)
T PLN03227        364 HTREDIDKLLTVLGEAVEA  382 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence               6666666666666654

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.94  E-value=4.9e-25  Score=205.64  Aligned_cols=321  Identities=21%  Similarity=0.220  Sum_probs=210.1

Q ss_pred             ceeeccCCCCCCCCC-cccceeeeeeeecCCCCCCCCccccCC-CC-chHHHHHHHHHhhcCCCceEEeCcHHHHH-HHH
Q 016612           11 TLLMNFSNEFDPYGA-LSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AAV   86 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al-~~~   86 (386)
                      ..+++++ +++++|. .+|.+.++........ ..+...|... |. +...++++.++++++.++.+++++|++++ .++
T Consensus        16 ~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l   93 (360)
T TIGR00858        16 RRLLNFS-SNDYLGLASHPEVIQAAQQGAEQY-GAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVI   93 (360)
T ss_pred             ceEEecc-cCCcccCCCCHHHHHHHHHHHHhc-CCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHH
Confidence            3578888 4567885 4445544322111110 1111122222 54 47889999999999988899999998665 455


Q ss_pred             HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCC----CceEEEEeCCCCCCcccccHHHHH
Q 016612           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIA  162 (386)
Q Consensus        87 ~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~----~~~~v~~~~~~nptG~~~~l~~i~  162 (386)
                      .+++++||+|++++|.|+++..    .++..|.+++.++..|++++++.+++    +++++++++++|++|...++++|.
T Consensus        94 ~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~  169 (360)
T TIGR00858        94 SALVGKGDLILSDALNHASLID----GCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLV  169 (360)
T ss_pred             HHhCCCCCEEEEEccccHHHHH----HHHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHH
Confidence            6678999999999999988863    34567888888888899999988863    578999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCCCCCCccCC----------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh--
Q 016612          163 EMAHAHGALLLVDNSIMSPVLSRP----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--  230 (386)
Q Consensus       163 ~la~~~~~~li~D~a~~~~~~~~~----------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--  230 (386)
                      ++|+++|+++|+||+|+.+.+...          ...+.|+++.|+||++++ .   +||++++ +++.+.+......  
T Consensus       170 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~---gG~~~~~-~~~~~~~~~~~~~~~  244 (360)
T TIGR00858       170 ALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-Y---GAYVAGS-QALIDYLINRARTLI  244 (360)
T ss_pred             HHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-c---CcEEEcC-HHHHHHHHHhCccce
Confidence            999999999999999975543210          113678999999999954 3   4888876 4455544332221  


Q ss_pred             cCCCCChhhHHHHHhcCC---cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC
Q 016612          231 EGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  307 (386)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~  307 (386)
                      .+...++.+..+...+++   ......++..++.+.+.+.|++.+         +.      +.    ...++++++.++
T Consensus       245 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~---------~~------~~----~~~~~~~~~~~~  305 (360)
T TIGR00858       245 FSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG---------FT------LM----PSCTPIVPVIIG  305 (360)
T ss_pred             ecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC---------Cc------cC----CCCCCEEEEEeC
Confidence            122334443333333332   112334555666666666666432         11      11    124678888886


Q ss_pred             CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 016612          308 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       308 ~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                      ......++.+.+...|+.+.++....   .+                 ...+++||+++....++.++.+.++|
T Consensus       306 ~~~~~~~~~~~l~~~gI~v~~~~~~~---~~-----------------~~~~~iRis~~~~~~~~~i~~~l~~l  359 (360)
T TIGR00858       306 DNASALALAEELQQQGIFVGAIRPPT---VP-----------------AGTSRLRLTLSAAHTPGDIDRLAEAL  359 (360)
T ss_pred             CHHHHHHHHHHHHHCCeeEeeeCCCC---CC-----------------CCCceEEEEEcCCCCHHHHHHHHHhh
Confidence            65446678888888888776543210   00                 12457999998766666666665554

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.94  E-value=3.2e-25  Score=208.12  Aligned_cols=304  Identities=19%  Similarity=0.192  Sum_probs=190.3

Q ss_pred             hHHHHHHHHHhhcCCC-c-eEEeCcHHHHHHH-HHHhc---CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           56 TRDALESLLAKLDKAD-R-ALCFTSGMAALAA-VTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~-~i~~~~gt~al~~-~~~~~---~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      ..+++++.+++++|.+ + .+++++||++++. +..++   .+||+|+++..+|+++...+... +..|++++.++.+  
T Consensus        43 ~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~  121 (379)
T TIGR03402        43 AVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYLPVDEE  121 (379)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHH-HHcCCEEEEEccCCC
Confidence            5778889999999976 3 5555566798864 44432   56789999999998887666443 4579999988753  


Q ss_pred             ---CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 ---d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                         |++++++.++++++++++++++|+||.+.|+++|.++|+++|+++++|++++.|..+ +....++|++++|++|+ .
T Consensus       122 g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~-~  200 (379)
T TIGR03402       122 GRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKL-H  200 (379)
T ss_pred             CcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHc-C
Confidence               789999999999999999999999999999999999999999999999999988754 44457899999999995 5


Q ss_pred             cCCCceEEEEEEcChhHHHHHHH---hhhhcCCC-CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEec
Q 016612          204 GHSDVMAGVLAVKGERLAKELYF---LQNAEGSG-LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY  279 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  279 (386)
                      ||.|  .|+++.+++........   .......+ .+......+..+++......+...++.+.+.+++.+.        
T Consensus       201 gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~--------  270 (379)
T TIGR03402       201 GPKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAG--------  270 (379)
T ss_pred             CCCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------
Confidence            7888  78998875431110000   00000111 1222222222233222222333334444444443321        


Q ss_pred             CCCC-CCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCC-
Q 016612          280 AGLP-EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT-  357 (386)
Q Consensus       280 ~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~-  357 (386)
                        +. .+++..+.........+++.+.+.... .+.+...+..+||.++.|..++.-...        +......+|.. 
T Consensus       271 --l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gI~v~~g~~c~~~~~~--------~~~~~~~lg~~~  339 (379)
T TIGR03402       271 --LLARIPDARLNGDPTKRLPNTVNISFEYIE-GEAILLLLDMEGICASSGSACTSGSLE--------PSHVLRAMGVPH  339 (379)
T ss_pred             --HHhhCCCEEEeCCCccCCCCEEEEEecCCC-HHHHHHhhccCCEEEEchhhcCCCCCC--------cCHHHHHcCCCh
Confidence              11 022222221111111346666665433 567788888889998888753321110        11122333332 


Q ss_pred             ---CCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          358 ---EDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       358 ---~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                         .+.||+|++.    ++++++++.|+++++
T Consensus       340 ~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~  371 (379)
T TIGR03402       340 TAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIA  371 (379)
T ss_pred             hhcCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence               4789999986    555555555555443

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=3.4e-26  Score=213.69  Aligned_cols=282  Identities=16%  Similarity=0.182  Sum_probs=188.1

Q ss_pred             CccccCCCCc-hHHHHHHHHHhhcCCC---ceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           46 PYDYTRSGNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        46 ~~~y~~~g~~-~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ...|...|.+ +++++.+++.+.+|.+   +.|++++|+ +++..+ .+++++||.|+++.|+|+.+.    ..++..|.
T Consensus        59 ~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~----~~~~~~g~  134 (368)
T PRK03317         59 LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHP----IIARGTHT  134 (368)
T ss_pred             hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHhcCC
Confidence            3566555665 7888888887766542   566666665 888755 557899999999999998885    44557788


Q ss_pred             EEEEeCCC-----CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc---CCC---
Q 016612          120 VVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---RPL---  187 (386)
Q Consensus       120 ~~~~v~~~-----d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~---~~~---  187 (386)
                      +++.++..     |++++++++. ++++++++++|+||||.+.+.+++.++++..++++|+||+|+.....   ...   
T Consensus       135 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~  214 (368)
T PRK03317        135 EWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL  214 (368)
T ss_pred             eeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence            88877642     7899998886 57899999999999999999999999999999999999998732111   001   


Q ss_pred             -CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH---HHHHHHHHHHHH
Q 016612          188 -ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA---LRVEKQQDNAQK  263 (386)
Q Consensus       188 -~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  263 (386)
                       .....+++.|+||.++ .+|+|+||++++ +++.+.+.....  ....++..+.++...++...   ...++..++.+.
T Consensus       215 ~~~~~~i~~~SfSK~~g-~~GlRiG~~~~~-~~~~~~l~~~~~--~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  290 (368)
T PRK03317        215 PEYPRLVVSRTMSKAFA-FAGGRLGYLAAA-PAVVDALRLVRL--PYHLSAVTQAAARAALRHADELLASVAALRAERDR  290 (368)
T ss_pred             HhCCCEEEEEechhhhc-cchhhhhhhhCC-HHHHHHHHhcCC--CCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence             1234688999999994 457999999986 556555554332  33456666666555554322   122223333333


Q ss_pred             HHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE-EeCCHHhHHHHHhhcCcceeccCCCCcccccccccccc
Q 016612          264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS  342 (386)
Q Consensus       264 l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~  342 (386)
                      +.+.+++..         +      .+.    ...++++.| .+.+   ...+.+.+...|+.+...+            
T Consensus       291 l~~~L~~~g---------~------~~~----~~~~~~~~~~~~~~---~~~~~~~l~~~Gv~v~~~~------------  336 (368)
T PRK03317        291 VVAWLRELG---------L------RVA----PSDANFVLFGRFAD---RHAVWQGLLDRGVLIRDVG------------  336 (368)
T ss_pred             HHHHHHHCC---------C------EeC----CCCCcEEEEeccCC---HHHHHHHHHHCCEEEEeCC------------
Confidence            444443321         1      111    123455555 3332   4556666666777654321            


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 016612          343 HASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  383 (386)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  383 (386)
                                    .++++|++++. ++++.+++.++++++.
T Consensus       337 --------------~~~~iRi~~~~~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        337 --------------IPGWLRVTIGTPEENDAFLAALAEVLAT  364 (368)
T ss_pred             --------------CCCeEEEecCCHHHHHHHHHHHHHHHHH
Confidence                          14679999974 6778888888887753

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=2.5e-25  Score=207.04  Aligned_cols=278  Identities=18%  Similarity=0.204  Sum_probs=184.9

Q ss_pred             chHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-HHhcCCC-CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD-RALCFTSGM-AALAAV-THLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~~~~~~g-~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +...++++.+++++|.+ +.|++++|+ +++..+ ..++++| |.|++++|.|+.+.    ..++..|.+++.++..   
T Consensus        59 ~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~  134 (364)
T PRK04781         59 PQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA----VCARLQNAPLVEVPLVDGA  134 (364)
T ss_pred             CCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEEecCCCc
Confidence            33567888888888876 456666665 888754 5567888 79999999987664    4456778999888752   


Q ss_pred             -----CHHHHHhh-hCCCceEEEEeCCCCCCcccccHHHHHHHHHH--cCCEEEEeCCCCCCCcc-C----CCCCCccEE
Q 016612          128 -----DLDEVASA-IGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS-R----PLELGADIV  194 (386)
Q Consensus       128 -----d~~~l~~~-~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~~~~li~D~a~~~~~~~-~----~~~~~~di~  194 (386)
                           |++++.+. ..++++++++++|+||||.+.+.+++.++++.  ++++||+||+|...... .    ....+..++
T Consensus       135 ~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~  214 (364)
T PRK04781        135 DGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAV  214 (364)
T ss_pred             cCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEE
Confidence                 46666544 35789999999999999999998887777765  47899999998632211 1    112356799


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHh
Q 016612          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLA  269 (386)
Q Consensus       195 ~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~  269 (386)
                      +.||||.+ |.+|+|+||++++ +++.+.+......  .+.+...+.++...+..     +....+...++.+.+.+.++
T Consensus       215 ~~SfSK~~-gl~GlRvGy~v~~-~~l~~~l~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~  290 (364)
T PRK04781        215 LRTLSKAH-ALAAARIGSLIAN-AELIAVLRRCQAP--YPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALA  290 (364)
T ss_pred             EecChhhc-ccccceeeeeeCC-HHHHHHHHhccCC--CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 5568999999986 4566656554432  23444444444333322     22223334444445555554


Q ss_pred             hCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHH
Q 016612          270 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  349 (386)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~  349 (386)
                      +.+              +....  . +..|.++++.+++   .+++.+.+...|+.+++|..+.                
T Consensus       291 ~~~--------------~~~~~--~-p~~g~f~~~~~~~---~~~~~~~l~~~gI~v~~~~~~~----------------  334 (364)
T PRK04781        291 QLP--------------GVRRV--Y-PSQGNFLLVRFDD---AEAAFQALLAAGVVVRDQRAAP----------------  334 (364)
T ss_pred             hCC--------------CCCeE--C-CCCCcEEEEEcCC---HHHHHHHHHHCCeEEeeCCCCC----------------
Confidence            332              11100  1 2347888888864   3456677777888877765311                


Q ss_pred             HHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 016612          350 VRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  382 (386)
Q Consensus       350 ~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  382 (386)
                           + .++++||+++. ++++.+++.|++...
T Consensus       335 -----~-~~~~~Ris~~~~~~~~~l~~al~~~~~  362 (364)
T PRK04781        335 -----R-LSDALRITLGTPEQNDRVLAALQRTQA  362 (364)
T ss_pred             -----C-CCCeEEEeCCCHHHHHHHHHHHHHHHh
Confidence                 1 25689999985 778899998887654

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.3e-25  Score=211.89  Aligned_cols=200  Identities=16%  Similarity=0.115  Sum_probs=139.3

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcCC---CceEE---eCcHHHHHHHHH----HhcCCCCEEEecCCCCCcHHHHHh
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDKA---DRALC---FTSGMAALAAVT----HLLGTGEEIVAGDDLYGGTDRLLS  111 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g~---~~~i~---~~~gt~al~~~~----~~~~~g~~Vlv~~~~~~~~~~~~~  111 (386)
                      ....+|++. |.+ +|+++.+++.+..+.   ++.|+   +.++++|+..+.    ++++|||+|++++|+|+.+.    
T Consensus        63 ~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~----  138 (404)
T PTZ00376         63 NLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHV----  138 (404)
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHH----
Confidence            344779987 887 888888888665431   23444   445557775432    56799999999999999985    


Q ss_pred             hhcccCCcEEEEeCC---C----CHHHHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCC
Q 016612          112 RVTPKTGVVVKRVNT---C----DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       112 ~~~~~~g~~~~~v~~---~----d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~  178 (386)
                      .+++..|.+++.+++   +    |++.+++.+.   ++++++++++||||||.+.+   +++|.++|++|+++||+||+|
T Consensus       139 ~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y  218 (404)
T PTZ00376        139 NIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAY  218 (404)
T ss_pred             HHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhh
Confidence            567788999999986   2    6888888874   45678888999999999986   778899999999999999998


Q ss_pred             CCCCccC-----------CCCCCccEEEeccccccccCCCceEEEEE--EcChhHHHHH----HHhhhhcCCCCChhhHH
Q 016612          179 MSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLA--VKGERLAKEL----YFLQNAEGSGLAPFDCW  241 (386)
Q Consensus       179 ~~~~~~~-----------~~~~~~di~~~S~sK~~~g~~g~~~G~i~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~  241 (386)
                      ..-.+..           ....+..+++.|+||.+ +.+|+|+||++  ..++.+.+.+    ...........+...+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~  297 (404)
T PTZ00376        219 QGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM-GLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGAR  297 (404)
T ss_pred             cCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc-cccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHH
Confidence            6332211           01113579999999999 55689999984  3345443322    22222222334445555


Q ss_pred             HHHhcCC
Q 016612          242 ICLRGVK  248 (386)
Q Consensus       242 ~~~~~~~  248 (386)
                      ++...++
T Consensus       298 ~~~~~l~  304 (404)
T PTZ00376        298 IADRILS  304 (404)
T ss_pred             HHHHHhC
Confidence            5555444

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.94  E-value=4e-25  Score=209.32  Aligned_cols=325  Identities=18%  Similarity=0.161  Sum_probs=206.5

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccc-cCCCCc-hHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDY-TRSGNP-TRDALESLLAKLDKADRALCFTSGMAALA-AVTH   88 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y-~~~g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~   88 (386)
                      .+++++ +|+|+|..++|.........-+....+.... ..+|.. ...++++.+++++|.++.+++++|+++.. ++..
T Consensus        47 ~~~~~~-sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~  125 (410)
T PRK13392         47 RVTIWC-SNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALST  125 (410)
T ss_pred             eEEEEE-CCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHH
Confidence            477888 8999999877754321111100000011111 112443 67899999999999889999999997765 4433


Q ss_pred             hc--CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC----CCceEEEEeCCCCCCcccccHHHHH
Q 016612           89 LL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIA  162 (386)
Q Consensus        89 ~~--~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i~  162 (386)
                      +.  .+|+.|+++...|.++..    .++..|.++..++..|.+++++.+.    +++++|++++|+||+|.+.|+++|.
T Consensus       126 l~~~~~g~~vi~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~  201 (410)
T PRK13392        126 LGKLLPGCVILSDALNHASMIE----GIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAIC  201 (410)
T ss_pred             HhcCCCCCEEEEehhhhHHHHH----HHHHcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHH
Confidence            43  489988887777776643    3445778877777667777666553    5789999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCCCCCCccCC---------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh--c
Q 016612          163 EMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--E  231 (386)
Q Consensus       163 ~la~~~~~~li~D~a~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--~  231 (386)
                      ++|+++|+++|+||+|+.+.+...         .....|+++.|+||+++.+    +||++++ +++.+.++.....  .
T Consensus       202 ~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~----GG~~~~~-~~~~~~l~~~~~~~~~  276 (410)
T PRK13392        202 DLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL----GGYIAAS-ADLIDFVRSFAPGFIF  276 (410)
T ss_pred             HHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc----cchhhcC-HHHHHHHHHhCcchhc
Confidence            999999999999999985553210         1124589999999999653    4788775 5565555444322  2


Q ss_pred             CCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC
Q 016612          232 GSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  308 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~  308 (386)
                      +...++..++++..+++.   .....+++.++.+.+.+.+++..         ++..          ++.++++.+.+++
T Consensus       277 s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~~~~~i~~~~  337 (410)
T PRK13392        277 TTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANG---------IPVM----------PSPSHIVPVMVGD  337 (410)
T ss_pred             cCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------CCCC----------CCCCCEEEEEeCC
Confidence            333444444444333332   22333445555666666665431         1111          2245666666655


Q ss_pred             HHhHHHHHhhcC-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          309 LALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       309 ~~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      .....++.+.+. ..|+.++++..      |..              ..+.+++|++++    .++++.+++.|.+++++
T Consensus       338 ~~~~~~~~~~L~~~~GI~v~~~~~------p~~--------------~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~  397 (410)
T PRK13392        338 PTLCKAISDRLMSEHGIYIQPINY------PTV--------------PRGTERLRITPTPLHDDEDIDALVAALVAIWDR  397 (410)
T ss_pred             HHHHHHHHHHHHHhCCEEEeeeCC------CCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            444567777764 56887665322      100              112467999985    37777788888777766


Q ss_pred             CC
Q 016612          384 GP  385 (386)
Q Consensus       384 ~~  385 (386)
                      .+
T Consensus       398 ~~  399 (410)
T PRK13392        398 LE  399 (410)
T ss_pred             cC
Confidence            54

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.94  E-value=1.7e-24  Score=201.19  Aligned_cols=269  Identities=19%  Similarity=0.231  Sum_probs=176.1

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcHH-HHHHHHHH-h-cCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AALAAVTH-L-LGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~gt-~al~~~~~-~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ...|... |.+ +++++.+++.+.+|.+    +.|++++|+ +++..+.. + +++||.|++++|+|+++.    ..++.
T Consensus        49 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~  124 (357)
T TIGR03539        49 APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYE----VGALL  124 (357)
T ss_pred             hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHH----HHHHh
Confidence            3568776 776 8999999998876532    556666664 88876544 5 689999999999998885    33456


Q ss_pred             CCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-------CC
Q 016612          117 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------RP  186 (386)
Q Consensus       117 ~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-------~~  186 (386)
                      .|.+++.++  +++++.   .+++++|++++|+||||.+++   +++|.++|+++|+++|+||+|..-.+.       ++
T Consensus       125 ~g~~~~~v~--~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~  199 (357)
T TIGR03539       125 AGATPVAAD--DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDP  199 (357)
T ss_pred             cCCEEeccC--ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceec
Confidence            788887775  443332   368999999999999999986   678999999999999999998521110       11


Q ss_pred             ----CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHH
Q 016612          187 ----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQD  259 (386)
Q Consensus       187 ----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  259 (386)
                          ......+++.|+||.+ +.+|+|+||++++ +.+.+.+.......+...+...+.++...+...   ......+.+
T Consensus       200 ~~~~~~~~~vi~~~S~SK~~-~~~G~R~G~~i~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  277 (357)
T TIGR03539       200 RVCGGDHTGLLAVHSLSKRS-NLAGYRAGFVAGD-PALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAA  277 (357)
T ss_pred             ccCCCccccEEEEecccccc-CCCceeEEEEecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                1123569999999998 4568999999976 556655655554444455665666555555431   112223334


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCce-EEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV-LSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP  338 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p  338 (386)
                      +.+.+.+.+++..         +.      +.    ...+++ +++.++.  ....+.+.+...|+.+.+|..+.     
T Consensus       278 ~~~~~~~~L~~~g---------~~------~~----~p~~~~~~~~~~~~--~~~~~~~~l~~~gV~v~pg~~f~-----  331 (357)
T TIGR03539       278 RRAQLKPALEKAG---------FR------ID----HSEAGLYLWATRGE--DAWDTVDRLAELGILVAPGDFYG-----  331 (357)
T ss_pred             HHHHHHHHHHHcC---------CC------Cc----CCCccEEEEEECCC--CHHHHHHHHHhCCEEECCccccC-----
Confidence            4444445554321         11      11    123444 4444432  24456666777788877766421     


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEecc
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISVGI  367 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~  367 (386)
                                      ...+++||||++.
T Consensus       332 ----------------~~~~~~iRis~~~  344 (357)
T TIGR03539       332 ----------------PAGSQHVRVALTA  344 (357)
T ss_pred             ----------------CCCCCeEEEEecC
Confidence                            0125789999986

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.94  E-value=1.5e-25  Score=207.92  Aligned_cols=271  Identities=20%  Similarity=0.226  Sum_probs=183.1

Q ss_pred             HHHHHHHHhhcCCC-ceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CH
Q 016612           58 DALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL  129 (386)
Q Consensus        58 ~~l~~~l~~~~g~~-~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~  129 (386)
                      .++++.++++++.+ +.+++++| ++++. ++..++++||+|++++|+|+.+.    ..++..|.+++.++.+     |+
T Consensus        57 ~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~  132 (346)
T TIGR01141        57 AELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYE----ISAKIHGAEVVKVPLDEDGQLDL  132 (346)
T ss_pred             HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEeccCCCCCCCH
Confidence            67888888888765 44555555 58886 45567899999999999997653    4456789999888753     78


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCcc-CC---C-CCCccEEEecccccc
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RP---L-ELGADIVMHSATKFI  202 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~-~~---~-~~~~di~~~S~sK~~  202 (386)
                      +++++.+++++++|++++|+||||.+.+++++.++|+.+  ++++|+|++|+.-... +.   . ..+.+++++|+||++
T Consensus       133 ~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~  212 (346)
T TIGR01141       133 EDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAF  212 (346)
T ss_pred             HHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhh
Confidence            999998888999999999999999999999999999887  9999999998721111 11   1 123568899999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEec
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNY  279 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  279 (386)
                       |.+|+|+||++++ +.+.+.+......  .+.+...+.++...++..   ....++..++.+.+.+.+++.+       
T Consensus       213 -g~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~-------  281 (346)
T TIGR01141       213 -GLAGLRIGYAIAN-AEIIDALNKVRAP--FNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLP-------  281 (346)
T ss_pred             -hchhhhceeeecC-HHHHHHHHhccCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence             4557899999986 4555555544322  334555555554444432   2233444455555555555432       


Q ss_pred             CCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCC
Q 016612          280 AGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  359 (386)
Q Consensus       280 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  359 (386)
                             +..+.    +..++++++.++.  ..+++.+.+...|+.+.+|..+.                     +. ++
T Consensus       282 -------g~~~~----~~~g~~~~~~~~~--~~~~~~~~L~~~gI~v~~g~~f~---------------------~~-~~  326 (346)
T TIGR01141       282 -------GLEVY----PSDANFVLIRFPR--DADALFEALLEKGIIVRDLNSYP---------------------GL-PN  326 (346)
T ss_pred             -------CCEEC----CCcCCEEEEecCC--CHHHHHHHHHHCCeEEEeCCCcC---------------------CC-CC
Confidence                   11111    1236788888864  35677777778888877765421                     11 56


Q ss_pred             eEEEEeccCChHHHHHHHHHHH
Q 016612          360 LVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       360 ~iRis~~~~~~~~~i~~l~~~l  381 (386)
                      ++|+|++.   ++.++.+.++|
T Consensus       327 ~iRls~~~---~~~i~~~~~~l  345 (346)
T TIGR01141       327 CLRITVGT---REENDRFLAAL  345 (346)
T ss_pred             eEEEecCC---HHHHHHHHHHh
Confidence            79999873   33444444443

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.94  E-value=3.5e-25  Score=207.56  Aligned_cols=291  Identities=22%  Similarity=0.231  Sum_probs=192.9

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeCcHHHHHH-HHHHhcC---CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~gt~al~-~~~~~~~---~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ...++++.+++++|.+   +.++++++++++. ++.++..   +||+|+++++.|++....+..+++..|.+++.++.+ 
T Consensus        44 ~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  123 (373)
T cd06453          44 AYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD  123 (373)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC
Confidence            4677889999999876   4556666678887 4555655   899999999999987655556677889999988764 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                          |++++++.+++++++|++++++||||.+.|+++|.++|+++|++|++|++++.+... +....+.|++++|++|++
T Consensus       124 ~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~  203 (373)
T cd06453         124 DGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKML  203 (373)
T ss_pred             CCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEecccccc
Confidence                899999999989999999999999999999999999999999999999999877653 233458999999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhc--------------------CC-CCChhhHHHHHhcCC-----cHHHHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAE--------------------GS-GLAPFDCWICLRGVK-----TMALRVEK  256 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~--------------------~~-~~~~~~~~~~~~~~~-----~~~~~~~~  256 (386)
                      ++ .|  +|+++++++ +.+.+.......                    .. ..+......+..+++     .+....++
T Consensus       204 ~~-~g--~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~  279 (373)
T cd06453         204 GP-TG--IGVLYGKEE-LLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAH  279 (373)
T ss_pred             CC-CC--cEEEEEchH-HhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            66 54  699988754 433332221100                    00 111111111112222     12222333


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLIS  336 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~  336 (386)
                      ..+..+.+.+.+++.+              ++.++. .+...+++++|.++.. ...++.+.+...|+.+..|....   
T Consensus       280 ~~~~~~~l~~~l~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~~~l~~~gi~i~~g~~~~---  340 (373)
T cd06453         280 EHELTAYALERLSEIP--------------GVRVYG-DAEDRAGVVSFNLEGI-HPHDVATILDQYGIAVRAGHHCA---  340 (373)
T ss_pred             HHHHHHHHHHHHhcCC--------------CeEEeC-CccccCCeEEEEECCc-CHHHHHHHHHHCCEEeccCccch---
Confidence            3344444444444432              222221 1123467888888653 35677777777788776654311   


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 016612          337 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       337 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                      .|.           ....+ .+++||+|++..+.++.++.+.++|
T Consensus       341 ~~~-----------~~~~~-~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         341 QPL-----------MRRLG-VPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             hHH-----------HHHhC-CCCeEEEEecCCCCHHHHHHHHhhC
Confidence            110           00111 2467999999877777777776654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=3.4e-25  Score=206.02  Aligned_cols=273  Identities=14%  Similarity=0.141  Sum_probs=179.8

Q ss_pred             HHHHHHHHhhcCCC-ceEEeCcH-HHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CH
Q 016612           58 DALESLLAKLDKAD-RALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL  129 (386)
Q Consensus        58 ~~l~~~l~~~~g~~-~~i~~~~g-t~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~  129 (386)
                      .++++.++++++.+ +.|++++| ++++.. +.+++++||+|++++|+|+.+.    ..++..|++++.++.+     |+
T Consensus        63 ~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~  138 (353)
T PRK05387         63 DALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYP----VYAGLYGIPYEEIPLDDDFSIDV  138 (353)
T ss_pred             HHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHH----HHHHHcCCEEEEeecCCCCCCCH
Confidence            46777777777765 45555555 599875 5567899999999999997764    4456788898888764     56


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc-CCEEEEeCCCCCCCccC----CCCCCccEEEecccccccc
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIAG  204 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~-~~~li~D~a~~~~~~~~----~~~~~~di~~~S~sK~~~g  204 (386)
                      +++++    +++++++++|+||||.+.+.+++.++++.+ ++++|+||+|.......    ....+.+++++|+||.+ |
T Consensus       139 ~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~  213 (353)
T PRK05387        139 EDYLR----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSR-S  213 (353)
T ss_pred             HHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhh-c
Confidence            66653    467899999999999999999999999876 99999999985211110    11235679999999999 5


Q ss_pred             CCCceEEEEEEcChhHHHHHHHhhhhc-CCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecC
Q 016612          205 HSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  280 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  280 (386)
                      .+|+|+||++++ +++.+.+....... ....+...+.++...+..   +....++..++.+.+.+.+++..        
T Consensus       214 ~~GlR~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------  284 (353)
T PRK05387        214 LAGLRVGFAIGH-PELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALG--------  284 (353)
T ss_pred             chhhhceeeecC-HHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC--------
Confidence            568999999986 55656555554332 234455555555454432   22223334444445555554431        


Q ss_pred             CCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCe
Q 016612          281 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  360 (386)
Q Consensus       281 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  360 (386)
                       +      .+.    +..++++++.+++. ...++.+.+...|+.++....      +                 ..+++
T Consensus       285 -~------~~~----~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~~~~------~-----------------~~~~~  329 (353)
T PRK05387        285 -F------EVL----PSKANFVFARHPSH-DAAELAAKLRERGIIVRHFNK------P-----------------RIDQF  329 (353)
T ss_pred             -C------eEC----CCcCcEEEEECCCC-CHHHHHHHHHHCCEEEEECCC------C-----------------CCCCe
Confidence             1      111    12356777776532 355666767667776542110      0                 02467


Q ss_pred             EEEEecc-CChHHHHHHHHHHHhc
Q 016612          361 VRISVGI-EDVNDLISDLDKALRT  383 (386)
Q Consensus       361 iRis~~~-~~~~~~i~~l~~~l~~  383 (386)
                      +|+|++. ++++++++.|++++.+
T Consensus       330 iRis~~~~~~~~~~~~~L~~~~~~  353 (353)
T PRK05387        330 LRITIGTDEEMEALVDALKEILAK  353 (353)
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhhC
Confidence            9999974 7778888888887653

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.94  E-value=1.8e-25  Score=209.93  Aligned_cols=299  Identities=16%  Similarity=0.089  Sum_probs=181.0

Q ss_pred             HHHHHHhhcCC--CceEE-eCcHHHHHHHHHH-h-----cCC-CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           60 LESLLAKLDKA--DRALC-FTSGMAALAAVTH-L-----LGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        60 l~~~l~~~~g~--~~~i~-~~~gt~al~~~~~-~-----~~~-g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      .++.+.+.++.  .+.++ +++++++++.++. +     .++ +++|+++...|+++...+. .++..|.+++.++.+  
T Consensus        47 a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-~~~~~G~~v~~v~~~~~  125 (382)
T TIGR03403        47 ALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCA-FLESLGVEVTYLPINEQ  125 (382)
T ss_pred             HHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHH-HHHHCCCEEEEEecCCC
Confidence            33334444553  24454 5555689875433 3     245 4689999999998877664 456789999998864  


Q ss_pred             ---CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 ---d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                         |++++++.++++++++++++++||||.+.|+++|.++|+++|+++++|++++.+... +....+.|++++|++|++ 
T Consensus       126 g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-  204 (382)
T TIGR03403       126 GTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFH-  204 (382)
T ss_pred             CCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhC-
Confidence               789999999989999999999999999999999999999999999999999877653 444568999999999986 


Q ss_pred             cCCCceEEEEEEcChhHHHH-HHHhh--h-hcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEec
Q 016612          204 GHSDVMAGVLAVKGERLAKE-LYFLQ--N-AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY  279 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  279 (386)
                      ||+|  .|+++.++..-... +....  . ......+......+..+++......+...++.+.+.+++.+         
T Consensus       205 gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~---------  273 (382)
T TIGR03403       205 GPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLED---------  273 (382)
T ss_pred             CCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------
Confidence            7877  58888775421110 00000  0 00011222222222233322222222223333334433332         


Q ss_pred             CCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCC--
Q 016612          280 AGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT--  357 (386)
Q Consensus       280 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~--  357 (386)
                       +|..++++.++.+......+++.+.+++.. ...+...+..+||.++.|..++..    ...    +...+...|.+  
T Consensus       274 -~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~gI~v~~g~~c~~~----~~~----~~~v~~~~g~~~~  343 (382)
T TIGR03403       274 -ALLELPDVFVVGDREHRVPNTILISIKGVE-GEAMLWDLNKAGIAASTGSACASE----DLE----ANPVMVAIGADKE  343 (382)
T ss_pred             -HHhcCCCEEEECCCCCCcCCEEEEEeCCCC-HHHHHHhhccCCEEEEchhccCCC----CCC----cCHHHHHcCCChH
Confidence             233333444432211112356777776533 556667788889999887653211    000    11223333432  


Q ss_pred             --CCeEEEEeccCChHHHHHHHHHHH
Q 016612          358 --EDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       358 --~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                        .+.||+|++..++++.++.+.++|
T Consensus       344 ~~~~~iR~s~~~~~t~~did~~~~~l  369 (382)
T TIGR03403       344 LAHTAIRLSLSRFTTEEEIDYTIEVF  369 (382)
T ss_pred             HhCeeEEEECCCCCCHHHHHHHHHHH
Confidence              367999998644444444444444

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.94  E-value=6e-25  Score=205.08  Aligned_cols=280  Identities=16%  Similarity=0.128  Sum_probs=188.8

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      +...++++.+++++|.+..+++++|++++. ++.+++++||.|+++.+.|.+..    ..++..|++++.++..      
T Consensus        51 ~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~----~~~~~~g~~~~~~~~~~~~~~~  126 (370)
T TIGR02539        51 PPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSY----VAAERAGLNVKEVPHTGHPEYK  126 (370)
T ss_pred             hHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHH----HHHHHcCCEEEEEecCCcccCC
Confidence            467788888999999998888888889987 55667899999999988887664    3356788999888864      


Q ss_pred             -CHHHHHhhhC-------CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecc
Q 016612          128 -DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (386)
Q Consensus       128 -d~~~l~~~~~-------~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~  198 (386)
                       |++++++.++       +++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+... +....+.|++++|+
T Consensus       127 ~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~  206 (370)
T TIGR02539       127 VDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSG  206 (370)
T ss_pred             cCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeC
Confidence             8999998885       36889999999999999999999999999999999999999987543 23345789999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHhhhhcC--------CCCChhhHHHHHhcCCcHHHHH---HHHHHHHHHHHHH
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG--------SGLAPFDCWICLRGVKTMALRV---EKQQDNAQKIAEF  267 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~  267 (386)
                      ||++++ + .++|++++++ .+.+.+........        .............++.....+.   .+..++.+++.+.
T Consensus       207 sK~~~~-~-g~~G~l~~~~-~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~  283 (370)
T TIGR02539       207 HKSMAA-S-GPCGVLGMSE-EWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAE  283 (370)
T ss_pred             cccccC-C-CCEEEEEECH-HHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999964 3 3589999874 45454433322110        1111112222222222211222   2222334455555


Q ss_pred             HhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--------HhHHHHHhhcCcceec-cCCCCcccccccc
Q 016612          268 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------ALSKHVVETTKYFSIT-VSFGSVKSLISMP  338 (386)
Q Consensus       268 l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~-~~~G~~~~~~~~p  338 (386)
                      |++..               ..++... +..++++.+.++..        .....+.+.|...|+. +++|.        
T Consensus       284 L~~~g---------------~~~~~~~-~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~--------  339 (370)
T TIGR02539       284 LEDIG---------------FIQLGQK-PKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQ--------  339 (370)
T ss_pred             HHhCC---------------cEEEccC-CCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCc--------
Confidence            55432               1111001 22467777765421        1234677777777874 33211        


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEe--c-cCChHHHHHHHHHHHhcC
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISV--G-IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~--~-~~~~~~~i~~l~~~l~~~  384 (386)
                                         ++++|+++  + .++++++++.|++.++++
T Consensus       340 -------------------~~~iRis~~~~t~e~i~~l~~~L~~~~~~~  369 (370)
T TIGR02539       340 -------------------TKYFKLSVYGLTKEQVEYVVDSFEEIVEEY  369 (370)
T ss_pred             -------------------ceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence                               34699997  3 588899999998887754

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=4.2e-25  Score=206.03  Aligned_cols=282  Identities=20%  Similarity=0.214  Sum_probs=188.5

Q ss_pred             cccCCCCchHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHHH-HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           48 DYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        48 ~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~~-~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      .|.+.+   ..++++.++++++.+ +.|++++|+ +++..+. .++++||.|++++|+|+.+..    .++..|.+++.+
T Consensus        63 ~Y~~~~---~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~----~~~~~g~~~~~v  135 (369)
T PRK08153         63 KYGDPE---NHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNY----HVAGFGGRLVTV  135 (369)
T ss_pred             cCCCCc---cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHH----HHHHcCCeEEEe
Confidence            455443   457777788888876 567777776 8887554 468999999999999988863    344578888888


Q ss_pred             CCC----CHHHHHhhh-CCCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCcc---CCC--CCCcc
Q 016612          125 NTC----DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS---RPL--ELGAD  192 (386)
Q Consensus       125 ~~~----d~~~l~~~~-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~---~~~--~~~~d  192 (386)
                      +.+    |++++.+.+ +++++++++++|+||||.+.+.+++.++++..  +++||+||+|..-...   ...  .....
T Consensus       136 p~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~  215 (369)
T PRK08153        136 PYRDDREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNV  215 (369)
T ss_pred             eCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCE
Confidence            753    677777655 46899999999999999999877777766543  8999999998632211   011  12356


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHh
Q 016612          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLA  269 (386)
Q Consensus       193 i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~  269 (386)
                      +++.||||.+ |.+|+|+||++++ +++.+.+......  ...+...+.++...++.-   ....+...++.+.+.+.++
T Consensus       216 i~~~SfSK~~-g~~GlRiG~~v~~-~~~~~~l~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~  291 (369)
T PRK08153        216 IRMRTFSKAY-GLAGARVGYAIGA-PGTIKAFDKVRNH--FGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIAR  291 (369)
T ss_pred             EEEecchHhc-cCcchheeeeecC-HHHHHHHHHhhcC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 5568999999986 4565555544432  345666666665555431   1112223333344444444


Q ss_pred             hCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcCcceeccC-CCCccccccccccccCCCCC
Q 016612          270 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSITVS-FGSVKSLISMPCFMSHASIP  347 (386)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~-~G~~~~~~~~p~~~~~~~~~  347 (386)
                      +..         +.      ++    +..+.++++.++ +......+++++...|+.++ +|..                
T Consensus       292 ~~g---------~~------~~----p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~----------------  336 (369)
T PRK08153        292 ANG---------LT------PL----PSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVA----------------  336 (369)
T ss_pred             HCC---------Cc------cC----CCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCC----------------
Confidence            321         11      11    224667777764 33457788888878888764 3221                


Q ss_pred             HHHHHhcCCCCCeEEEEec-cCChHHHHHHHHHHHhc
Q 016612          348 VEVRQARGLTEDLVRISVG-IEDVNDLISDLDKALRT  383 (386)
Q Consensus       348 ~~~~~~~~~~~~~iRis~~-~~~~~~~i~~l~~~l~~  383 (386)
                              ..++++||+++ .++++.+++.|+++++.
T Consensus       337 --------~~~~~iRis~~~~~~~~~~~~al~~~~~~  365 (369)
T PRK08153        337 --------PLDRCIRVSCGPDEELDLFAEALPEALEA  365 (369)
T ss_pred             --------CCCCeEEEecCCHHHHHHHHHHHHHHHHH
Confidence                    02467999997 48899999999888764

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=7.6e-25  Score=204.64  Aligned_cols=273  Identities=19%  Similarity=0.230  Sum_probs=183.4

Q ss_pred             HHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CHH
Q 016612           59 ALESLLAKLDKAD-RALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLD  130 (386)
Q Consensus        59 ~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~  130 (386)
                      ++++.+++++|.+ +.|++++|+ ++++.+ .+++++||.|++++|+|+.+.    ..++..|++++.++.+     |++
T Consensus        75 ~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~  150 (371)
T PRK05166         75 ALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHE----DYPTMMGARVERVTVTPDLGFDLD  150 (371)
T ss_pred             HHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCeEEEeecCCCCCCCHH
Confidence            5777777777776 556666665 888754 557899999999999998774    4556788999888764     789


Q ss_pred             HHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHH--cCCEEEEeCCCCCCCcc----CC---C-C-CCccEEEeccc
Q 016612          131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS----RP---L-E-LGADIVMHSAT  199 (386)
Q Consensus       131 ~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~~~~li~D~a~~~~~~~----~~---~-~-~~~di~~~S~s  199 (386)
                      ++++.++++++++++++|+||||.+.+.+++.++++.  .++++|+||+|..-...    ..   . . ....+++.|+|
T Consensus       151 ~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfS  230 (371)
T PRK05166        151 ALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFS  230 (371)
T ss_pred             HHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeech
Confidence            9999888889999999999999999987666666654  48899999998632211    11   1 1 13568999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcce
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKK  276 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~  276 (386)
                      |.+ |.+|+|+||++++++++.+.+.....  ..+.+...+.++...+..   +....+.+.++.+.+.+.|++..    
T Consensus       231 K~~-~l~GlRiG~~i~~~~~l~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g----  303 (371)
T PRK05166        231 KAY-GLAGLRVGYGLVSDPELVGLLDRVRT--PFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEMG----  303 (371)
T ss_pred             Hhh-hcchhheeeeecCCHHHHHHHHHhcc--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc----
Confidence            999 55689999988766777666654432  234555555444444432   22222333344444555554331    


Q ss_pred             EecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          277 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       277 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                           +      .+.    +..+.++++.++.  ...++.+.+...|+.+.+|...                      + 
T Consensus       304 -----~------~~~----p~~g~fl~~~~~~--~~~~l~~~l~~~gi~v~p~~~~----------------------~-  343 (371)
T PRK05166        304 -----Y------RIA----PSRANFLFFDARR--PASAVAEALLRQGVIVKPWKQP----------------------G-  343 (371)
T ss_pred             -----C------eeC----CCcCCEEEEeCCC--CHHHHHHHHHHCCeEEecCCCC----------------------C-
Confidence                 1      110    2236677777642  2456666666678877765421                      1 


Q ss_pred             CCCeEEEEecc-CChHHHHHHHHHHHh
Q 016612          357 TEDLVRISVGI-EDVNDLISDLDKALR  382 (386)
Q Consensus       357 ~~~~iRis~~~-~~~~~~i~~l~~~l~  382 (386)
                      .+++|||+++. ++.+++++.|++.+.
T Consensus       344 ~~~~iRi~~~~~~~~~~l~~~l~~i~~  370 (371)
T PRK05166        344 FETFIRVSIGSPEENDHFVAALDKVLE  370 (371)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence            25789999986 458888888877654

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.94  E-value=1.6e-25  Score=211.61  Aligned_cols=296  Identities=24%  Similarity=0.266  Sum_probs=191.9

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEeCc-HHHHHHHH-HH---hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           56 TRDALESLLAKLDKAD-RALCFTS-GMAALAAV-TH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~-gt~al~~~-~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      ..+++++.+++++|.+ +.+++++ ++++++.+ .+   .++|||+|+++++.|++....+...++..|++++.++.+  
T Consensus        61 ~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~  140 (397)
T TIGR01976        61 VVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA  140 (397)
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc
Confidence            6789999999999976 3455544 45777643 23   368999999999999888766666777889999888753  


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                          |++++++.+++++++|++++|+||||.+.|+++|.++|+++|+++++|++++.+... +..+.++|++++|+||++
T Consensus       141 ~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~  220 (397)
T TIGR01976       141 TGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFF  220 (397)
T ss_pred             CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhc
Confidence                689999999989999999999999999999999999999999999999999766543 334568999999999998


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhh---------cCCCCChh-hHHHHHhcCCcHHH---------------HHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNA---------EGSGLAPF-DCWICLRGVKTMAL---------------RVEKQ  257 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~  257 (386)
                       |+   ++|+++++++ +.+.+......         ...+..+. ....+..+++.+..               ..+..
T Consensus       221 -g~---~~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~  295 (397)
T TIGR01976       221 -GP---HMGILWGRPE-LLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAI  295 (397)
T ss_pred             -CC---ceEEEEEcHH-HHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHH
Confidence             54   3799998754 43333221110         00111111 11111122211110               02223


Q ss_pred             HHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhh-ccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccc
Q 016612          258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS-QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLIS  336 (386)
Q Consensus       258 ~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~  336 (386)
                      .++...+.+++.+          +|..+++..++.+ ++...++++.+.+++. ....+.+.|..+|+.++.|..+..  
T Consensus       296 ~~~~~~l~~~l~~----------~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~gI~v~~~~~~~~--  362 (397)
T TIGR01976       296 DAYENRLAEYLLV----------GLSDLPGVTLYGVARLAARVPTVSFTVHGL-PPQRVVRRLADQGIDAWAGHFYAV--  362 (397)
T ss_pred             HHHHHHHHHHHHH----------HHhcCCCEEEeCCCCccCCCceEEEEeCCc-CHHHHHHHHHHCCeEEEeCccchH--
Confidence            3333344444432          1222222333321 1123567888887643 355677888888988776644210  


Q ss_pred             ccccccCCCCCHHHHHhcCC--CCCeEEEEeccCChHHHHHHHHHHH
Q 016612          337 MPCFMSHASIPVEVRQARGL--TEDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       337 ~p~~~~~~~~~~~~~~~~~~--~~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                       +           .....++  ..++||||++..++++.++.+.++|
T Consensus       363 -~-----------~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       363 -R-----------LLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             -H-----------HHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence             0           0011122  2467999999877888788777654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=7.4e-26  Score=209.65  Aligned_cols=272  Identities=18%  Similarity=0.222  Sum_probs=179.1

Q ss_pred             CchHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-HHhcCCC-CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           54 NPTRDALESLLAKLDKAD-RALCFTSGM-AALAAV-THLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~~~~~~g-~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      ++...++++.+++++|.+ +.|++++|+ +++..+ .+++++| |.|+++.|+|+.+.    ..++..|++++.++.+  
T Consensus        56 ~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~----~~~~~~G~~~~~v~~~~~  131 (351)
T PRK01688         56 ECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVEIRTVPTLDN  131 (351)
T ss_pred             CCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH----HHHHHcCCEEEEeecCCC
Confidence            334578999999999987 566666665 888754 5577887 89999999998774    5567789999888763  


Q ss_pred             ---CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCcc-C----CCCCCccEEEec
Q 016612          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-R----PLELGADIVMHS  197 (386)
Q Consensus       128 ---d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~-~----~~~~~~di~~~S  197 (386)
                         |++++++.+ +++++|++++|+||||.+.+.+++.++++..  +.+||+||+|...... +    ....+..+++.|
T Consensus       132 ~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rS  210 (351)
T PRK01688        132 WQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRT  210 (351)
T ss_pred             CCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEec
Confidence               688898877 5899999999999999999877766666532  6899999998633211 1    112356799999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHhhCC
Q 016612          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      |||++ |.+|+|+||++++ +++.+.+......  ..++...+.++...+..     +..+.+...++.+.+.+.|++.+
T Consensus       211 fSK~~-glaGlRiGy~i~~-~~~i~~l~~~~~~--~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  286 (351)
T PRK01688        211 LSKAF-ALAGLRCGFTLAN-EEVINLLLKVIAP--YPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIP  286 (351)
T ss_pred             chHhh-cCHHHHHhHHhCC-HHHHHHHHhccCC--CCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999 6778999999986 4455555444322  23444333333333321     22223333344444555554332


Q ss_pred             CcceEecCCCCCCCchh-hhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHH
Q 016612          273 RVKKVNYAGLPEHPGHE-LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  351 (386)
Q Consensus       273 ~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~  351 (386)
                                    +.. ++    +..+.++++.+.+   .+.+.+.+..+|+.++.+...     +             
T Consensus       287 --------------~~~~~~----ps~~nfi~~~~~~---~~~l~~~L~~~gi~vr~~~~~-----~-------------  327 (351)
T PRK01688        287 --------------CVEQVF----DSETNYILARFTA---SSAVFKSLWDQGIILRDQNKQ-----P-------------  327 (351)
T ss_pred             --------------CCCeEC----CCCCcEEEEEcCC---HHHHHHHHHHCCeEEEECCCc-----C-------------
Confidence                          111 11    2346778877753   456677777778877654321     0             


Q ss_pred             HhcCCCCCeEEEEecc-CChHHHHHHH
Q 016612          352 QARGLTEDLVRISVGI-EDVNDLISDL  377 (386)
Q Consensus       352 ~~~~~~~~~iRis~~~-~~~~~~i~~l  377 (386)
                         + .++++|||++. ++++.+++.|
T Consensus       328 ---~-~~~~iRis~~~~~e~~~l~~al  350 (351)
T PRK01688        328 ---G-LSNCLRITIGTREECQRVIDAL  350 (351)
T ss_pred             ---C-CCCeEEEeCCCHHHHHHHHHhh
Confidence               1 15689999984 5566655554

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.94  E-value=6.9e-25  Score=204.19  Aligned_cols=282  Identities=15%  Similarity=0.132  Sum_probs=182.5

Q ss_pred             ccccCCCCchHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      ..|...+   ..++++.++++++.+ +.|++++|+ +++..+...+.+||.|++++|+|+.+.    ..++..|.+++.+
T Consensus        52 ~~Y~~~~---~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~~g~~vlv~~P~y~~~~----~~~~~~g~~~~~v  124 (360)
T PRK07392         52 RHYPDPD---YRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELAQLRAVYLITPAFGDYR----RALRAFGATVKEL  124 (360)
T ss_pred             hcCCCcC---HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhCCCCeEEEECCCcHHHH----HHHHHcCCeEEEE
Confidence            4465433   246666666666665 556666665 889866655668899999999998885    5566789999888


Q ss_pred             CCC----------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----C----C
Q 016612          125 NTC----------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----R----P  186 (386)
Q Consensus       125 ~~~----------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----~----~  186 (386)
                      +.+          +++++++.. ++++++++++||||||.+++.++|.++++++++ +|+||+|..-...    .    .
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~  202 (360)
T PRK07392        125 PLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCL  202 (360)
T ss_pred             ecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHh
Confidence            764          244444333 478999999999999999999999999999985 6669998632211    1    1


Q ss_pred             CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHH---HHHHHHHHHH
Q 016612          187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR---VEKQQDNAQK  263 (386)
Q Consensus       187 ~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  263 (386)
                      ...+..+++.|+||.+ +.+|+|+||+++++ .+.+.+....  .....+...+.++...++.-...   .+...++.+.
T Consensus       203 ~~~~~vi~i~S~SK~~-~l~GlRiG~~v~~~-~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~  278 (360)
T PRK07392        203 AEYPNLIILRSLTKFY-SLPGLRLGYAIAHP-DRLQRWQQWR--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREA  278 (360)
T ss_pred             hcCCCEEEEEechhhh-cCCchheeeeeCCH-HHHHHHHhhC--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            1124579999999999 55689999999874 4545444332  22456666676666655532111   1222333333


Q ss_pred             HHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhh-cCcceeccCCCCcccccccccccc
Q 016612          264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET-TKYFSITVSFGSVKSLISMPCFMS  342 (386)
Q Consensus       264 l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~gi~~~~G~~~~~~~~p~~~~  342 (386)
                      +.+.+++.              +++.+.    .+.+.++++.++.  ...++.+. +...|+.+.+|..+.         
T Consensus       279 l~~~L~~~--------------~~~~~~----~~~~~fl~~~~~~--~~~~l~~~ll~~~gv~v~pg~~f~---------  329 (360)
T PRK07392        279 LFQGLASL--------------PGLTPL----PSAANFLLVQSQG--SALQLQEKLLQQHRILIRDCLSFP---------  329 (360)
T ss_pred             HHHHHHhC--------------CCcEEC----CCCCCEEEEEcCC--CHHHHHHHHHhhCCEEEEeCCCCC---------
Confidence            44444322              222221    2335667766643  24455555 355688877776521         


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 016612          343 HASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  382 (386)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  382 (386)
                                  +..++++||+++. ++.+++.+.+++.+.
T Consensus       330 ------------~~~~~~iRi~~~~~~~~~~l~~al~~~~~  358 (360)
T PRK07392        330 ------------ELGDRYFRVAVRTEAENQRLLEALAAILA  358 (360)
T ss_pred             ------------CCCCCEEEEEeCCHHHHHHHHHHHHHHhh
Confidence                        1135789999986 457888888887664

>PRK08354 putative aminotransferase; Provisional

Probab=99.94  E-value=1.7e-24  Score=197.31  Aligned_cols=263  Identities=17%  Similarity=0.162  Sum_probs=171.9

Q ss_pred             HHHHHHHHHhhcCCCceEEeCcH-HHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhh
Q 016612           57 RDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA  135 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~~~i~~~~g-t~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~  135 (386)
                      ...+++.+++++|. + |++++| ++++..+..++.+||.|++++|+|+.+.    .+++..|.+++.++ .|++.+++.
T Consensus        42 ~~~l~~~ia~~~~~-~-I~vt~G~~~al~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~-~d~~~l~~~  114 (311)
T PRK08354         42 YEWLEEEFSKLFGE-P-IVITAGITEALYLIGILALRDRKVIIPRHTYGEYE----RVARFFAARIIKGP-NDPEKLEEL  114 (311)
T ss_pred             hHHHHHHHHHHHCC-C-EEECCCHHHHHHHHHHhhCCCCeEEEeCCCcHHHH----HHHHHcCCEEeecC-CCHHHHHHh
Confidence            45678888888873 4 555555 5888866666669999999999999885    56678899998876 478899888


Q ss_pred             hCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccccCCCceEE
Q 016612          136 IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAG  211 (386)
Q Consensus       136 ~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~~~G  211 (386)
                      ++ +++++++++|+||||.+.+   +++|.++|+++|+++|+||+|...... .....+..+++.|+||.+ +.+|+|+|
T Consensus       115 ~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~-~l~GlRiG  192 (311)
T PRK08354        115 VE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSY-GLPGIRVG  192 (311)
T ss_pred             hc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhc-CCccceee
Confidence            76 5788999999999999986   677888889999999999998643322 112245689999999999 55689999


Q ss_pred             EEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhh
Q 016612          212 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  291 (386)
Q Consensus       212 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~  291 (386)
                      |+++    +.+.+.....  ....+..+..++...++..   .+...++.+.+.+..+...       ..+. .      
T Consensus       193 ~~v~----~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~-------~~l~-~------  249 (311)
T PRK08354        193 YVKG----FEEAFRSVRM--PWSIGSTGYAFLEFLIEDD---FEHLRKTMPLIWREKERFE-------KALY-V------  249 (311)
T ss_pred             eeee----hHHHHHHcCC--CccCCHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHH-------HhcC-C------
Confidence            9998    2233333322  1233333333332222210   1122222222222211110       0110 0      


Q ss_pred             hhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc-CCh
Q 016612          292 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDV  370 (386)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~  370 (386)
                          .+.++++.+.+.+   ..++.+.+...|+.+.+|..+.                       .++++||+++. ++.
T Consensus       250 ----~~~~~~~~~~~~~---~~~~~~~l~~~gv~v~~g~~f~-----------------------~~~~iRi~~~~~~~~  299 (311)
T PRK08354        250 ----KSDANFFIKDVGD---AEKFVEFLKRNGILVRDCTSFG-----------------------LPGYIRFSVRDREEN  299 (311)
T ss_pred             ----CCCCcEEEEECCC---HHHHHHHHHHCCeEEEecccCC-----------------------CCCeEEEEeCCHHHH
Confidence                1245667676543   3456666777788888876521                       14679999986 668


Q ss_pred             HHHHHHHHHHH
Q 016612          371 NDLISDLDKAL  381 (386)
Q Consensus       371 ~~~i~~l~~~l  381 (386)
                      +++++.|++.+
T Consensus       300 ~~l~~al~~~~  310 (311)
T PRK08354        300 EKLIRALREWR  310 (311)
T ss_pred             HHHHHHHHHhh
Confidence            88888887643

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.94  E-value=6.3e-25  Score=204.59  Aligned_cols=166  Identities=21%  Similarity=0.228  Sum_probs=135.7

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      ++|...++++.+++++|.++.++++++++++. ++.+++++||+|+++++.|.+..    ..++..|++++.++.+    
T Consensus        42 ~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~  117 (361)
T cd06452          42 EKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSY----VAAERAGLNVREVPNTGHPE  117 (361)
T ss_pred             cCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHH----HHHHhcCCEEEEEecCCCCC
Confidence            34678999999999999977777777788987 55567899999999999887775    3456788999888642    


Q ss_pred             ---CHHHHHhhhC-------CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEe
Q 016612          128 ---DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMH  196 (386)
Q Consensus       128 ---d~~~l~~~~~-------~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~  196 (386)
                         |+++++++++       +++++|++++|+||+|...|+++|.++|+++|+++|+|++|+.+... .....+.|++++
T Consensus       118 ~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~  197 (361)
T cd06452         118 YHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVG  197 (361)
T ss_pred             cccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEe
Confidence               6788888775       37899999999999999999999999999999999999999877643 334568899999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHH
Q 016612          197 SATKFIAGHSDVMAGVLAVKGERLAKELY  225 (386)
Q Consensus       197 S~sK~~~g~~g~~~G~i~~~~~~~~~~~~  225 (386)
                      |+||+++++.  ++|++++++ .+.+.+.
T Consensus       198 s~~K~l~~~~--~~G~l~~~~-~~~~~l~  223 (361)
T cd06452         198 SGHKSMAASA--PIGVLATTE-EWADIVF  223 (361)
T ss_pred             cCCccccCCC--CeEEEEECH-HHHHHHh
Confidence            9999996543  689999874 4544443

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.94  E-value=1.1e-24  Score=205.89  Aligned_cols=325  Identities=18%  Similarity=0.180  Sum_probs=209.5

Q ss_pred             ceeeccCCCCCCCCCccccee-eeeeeecCCCCCCCCccccC-CCC-chHHHHHHHHHhhcCCCceEEeCcHHHHHHHHH
Q 016612           11 TLLMNFSNEFDPYGALSTPLY-QTATFKQPSATENGPYDYTR-SGN-PTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~y~~-~g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~   87 (386)
                      -.+++++ +|+|+|..+.|.. ++........ ..+...+.. .+. +...++++.+++++|.+..++++||+++...++
T Consensus        45 ~~~~~~~-sn~ylgl~~~p~v~~a~~~~~~~~-~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai  122 (406)
T PRK13393         45 REVTVWC-SNDYLGMGQHPAVLAAMHEALDTC-GAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAAL  122 (406)
T ss_pred             ccEEEee-cccccCCCCCHHHHHHHHHHHHHc-CCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHH
Confidence            4588999 9999999776644 3211111110 011111111 243 478999999999999999999999998876444


Q ss_pred             H-hcC--CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC----CCceEEEEeCCCCCCcccccHHH
Q 016612           88 H-LLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK  160 (386)
Q Consensus        88 ~-~~~--~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~  160 (386)
                      . +..  +||.|++.+..|+++...+    ...|.+++.++..|++++++.++    +++++|++++++|++|.+.|+++
T Consensus       123 ~~l~~~~~g~~I~~~~~~H~s~~~~~----~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~  198 (406)
T PRK13393        123 STLGSRLPGCVILSDELNHASMIEGI----RHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAE  198 (406)
T ss_pred             HHhhcCCCCCEEEEccchhHHHHHHH----HHcCCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHH
Confidence            4 444  7887878777887776443    34567777788778888887764    36789999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCCCCCCccCC---------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh-
Q 016612          161 IAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-  230 (386)
Q Consensus       161 i~~la~~~~~~li~D~a~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~-  230 (386)
                      |.++|+++|+++|+||+|+.|.+...         .....|++++|++|.++.+    +||++++ +++.+.+...... 
T Consensus       199 i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~----GG~~~~~-~~~~~~l~~~~~~~  273 (406)
T PRK13393        199 ICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM----GGYITGS-AALCDFIRSFASGF  273 (406)
T ss_pred             HHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc----CceeeCC-HHHHHHHHHhCcCc
Confidence            99999999999999999985543211         1123588889999999643    4888765 5565555443322 


Q ss_pred             -cCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe
Q 016612          231 -EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  306 (386)
Q Consensus       231 -~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~  306 (386)
                       .+...++..++++..+++.+   .....+..++.+.+.+.+++..         ++..          ++.++++.+.+
T Consensus       274 ~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~~i~~v~~  334 (406)
T PRK13393        274 IFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAG---------IPHL----------PNPSHIVPVMV  334 (406)
T ss_pred             eecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC---------CCcC----------CCCCCeEEEEe
Confidence             23344554444444444322   2222344455556666665421         1111          23567777777


Q ss_pred             CCHHhHHHHHhhcCc-ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 016612          307 GSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  381 (386)
Q Consensus       307 ~~~~~~~~l~~~l~~-~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  381 (386)
                      ++......+.+.+.. .|+.++.+..      |..              ..+.++||++++.    ++++++++.|++++
T Consensus       335 ~~~~~~~~l~~~L~~~~Gi~v~~~~~------p~~--------------p~g~~~iRis~~~~~t~edid~l~~~l~~~~  394 (406)
T PRK13393        335 GDPVLCKQISDELLDRYGIYVQPINY------PTV--------------PRGTERLRITPSPLHTDADIEHLVQALSEIW  394 (406)
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEeECC------CCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            654456677777765 4877654321      110              1123679999963    77777777777777


Q ss_pred             hcCC
Q 016612          382 RTGP  385 (386)
Q Consensus       382 ~~~~  385 (386)
                      ++.+
T Consensus       395 ~~~~  398 (406)
T PRK13393        395 ARLG  398 (406)
T ss_pred             HhcC
Confidence            6554

>PLN02651 cysteine desulfurase

Probab=99.94  E-value=5.3e-25  Score=205.24  Aligned_cols=293  Identities=19%  Similarity=0.178  Sum_probs=192.6

Q ss_pred             hHHHHHHHHHhhcCCC-c-eEEeCcHHHHHHH-HHH----hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD-R-ALCFTSGMAALAA-VTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~-~i~~~~gt~al~~-~~~----~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..+++++.+++++|.+ + .++++++|++++. +..    +.++||+|++++..|+++...+..+ +..|++++.++.+ 
T Consensus        44 ~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~-~~~g~~v~~v~~~~  122 (364)
T PLN02651         44 AVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHL-QQEGFEVTYLPVKS  122 (364)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHH-HhcCCEEEEEccCC
Confidence            5778899999999976 3 4555556688753 322    2478999999999998887666444 4678888888753 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                          |++++++.++++++++++++++|+||.+.|+++|.++|+++|+++++|++++.|..+ +..++++|++++|.+|| 
T Consensus       123 ~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~-  201 (364)
T PLN02651        123 DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI-  201 (364)
T ss_pred             CCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhh-
Confidence                789999999999999999999999999999999999999999999999999988754 55567899999999998 


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhh------cCCCCCh-hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcc
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNA------EGSGLAP-FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  275 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  275 (386)
                      +||.|  .|+++++++...+ +......      ...+..+ .....+..+++.+....+...++.+.+.+++.+.    
T Consensus       202 ~gp~G--~g~l~v~~~~~~~-l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~----  274 (364)
T PLN02651        202 YGPKG--VGALYVRRRPRVR-LEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNG----  274 (364)
T ss_pred             CCCCc--eEEEEEcCCCCCC-CCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----
Confidence            47877  7999888653321 2111110      1112222 2222223334333322334444444555444431    


Q ss_pred             eEecCCCCC-CCchhhhhh-cc-CCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHH
Q 016612          276 KVNYAGLPE-HPGHELHYS-QA-KGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  352 (386)
Q Consensus       276 ~~~~~~l~~-~~~~~i~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~  352 (386)
                            +.. +++..++.+ .+ ....++++|.+++.. .+.+.+.|..  |.++.|.+++.-...        +.....
T Consensus       275 ------l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~L~~--i~v~~g~~c~~~~~~--------~~~~~~  337 (364)
T PLN02651        275 ------LRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVE-GESLLMGLKE--VAVSSGSACTSASLE--------PSYVLR  337 (364)
T ss_pred             ------HHhhCCCEEEECCCCcccCcCCEEEEEeCCCC-HHHHHHHhCC--EEEEchhhcCCCCCC--------cCHHHH
Confidence                  111 223333332 11 123568998886543 5677777765  777777753211110        111233


Q ss_pred             hcCCC----CCeEEEEeccCChHHHH
Q 016612          353 ARGLT----EDLVRISVGIEDVNDLI  374 (386)
Q Consensus       353 ~~~~~----~~~iRis~~~~~~~~~i  374 (386)
                      ++|..    .+.+|+|++..++++.|
T Consensus       338 ~~g~~~~~~~~~vR~S~~~~~t~~di  363 (364)
T PLN02651        338 ALGVPEEMAHGSLRLGVGRFTTEEEV  363 (364)
T ss_pred             HcCCChHHhCceEEEEcCCCCCHHHc
Confidence            34443    47899999987777655

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.94  E-value=9e-25  Score=206.45  Aligned_cols=326  Identities=19%  Similarity=0.170  Sum_probs=207.5

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCcccc-CCC-CchHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT-RSG-NPTRDALESLLAKLDKADRALCFTSGMAALAA-VT   87 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g-~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~   87 (386)
                      ..+++++ +|||+|..+.|.........-+....+..... ..| .+...++++.+++++|.++.+++++|++++.. +.
T Consensus        45 ~~~~~~~-sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~  123 (402)
T TIGR01821        45 KDVTVWC-SNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLA  123 (402)
T ss_pred             eeEEEeE-ccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHH
Confidence            4578999 99999999988554222111100001111111 124 35789999999999998889999999988764 43


Q ss_pred             HhcC--CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC----CCceEEEEeCCCCCCcccccHHHH
Q 016612           88 HLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKI  161 (386)
Q Consensus        88 ~~~~--~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i  161 (386)
                      .+..  +|+.|+.....|.+....    +...|.++..++..|.+++++.++    +++++|++++++||+|.+.|+++|
T Consensus       124 ~l~~~~~~~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i  199 (402)
T TIGR01821       124 TLAKIIPGCVIFSDELNHASMIEG----IRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEI  199 (402)
T ss_pred             HhhCCCCCCEEEEcchHhHHHHHH----HHHcCCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHH
Confidence            3433  677777766666555433    335677777777778888887775    368899999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCCCCCCccCC---------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh--
Q 016612          162 AEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--  230 (386)
Q Consensus       162 ~~la~~~~~~li~D~a~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--  230 (386)
                      .++|+++|+++|+||+|+.|.+...         .....|++++|+||.++++    +||++++ +++.+.+......  
T Consensus       200 ~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~i~~~-~~~~~~l~~~~~~~~  274 (402)
T TIGR01821       200 CDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV----GGYIAAS-RKLIDAIRSYAPGFI  274 (402)
T ss_pred             HHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC----CceeecC-HHHHHHHHHhCcCce
Confidence            9999999999999999985543210         1123589999999999643    3788776 4565555433221  


Q ss_pred             cCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC
Q 016612          231 EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  307 (386)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~  307 (386)
                      .....++..++++..+++.+   ....+...++.+.+.+.+++..         ++.+          ...++++.+.++
T Consensus       275 ~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~~i~~i~~~  335 (402)
T TIGR01821       275 FTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG---------IPVI----------PNPSHIVPVIIG  335 (402)
T ss_pred             ecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC---------CCcC----------CCCCCEEEEEeC
Confidence            22345555555544444322   2223334455566666665431         2111          124567777776


Q ss_pred             CHHhHHHHHhhcC-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHh
Q 016612          308 SLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALR  382 (386)
Q Consensus       308 ~~~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~  382 (386)
                      .......+.+.+. ..|+.+++..      +|..              ..+..++||+++    .++++++++.|+++++
T Consensus       336 ~~~~a~~~~~~L~~~~Gi~v~~~~------~p~~--------------~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~  395 (402)
T TIGR01821       336 DAALCKKVSDLLLNKHGIYVQPIN------YPTV--------------PRGTERLRITPTPAHTDKMIDDLVEALLLVWD  395 (402)
T ss_pred             CHHHHHHHHHHHHhcCCEEEEeEC------CCCC--------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            5545667777764 4477654421      1110              112357999985    3778888888888777


Q ss_pred             cCC
Q 016612          383 TGP  385 (386)
Q Consensus       383 ~~~  385 (386)
                      +.+
T Consensus       396 ~~~  398 (402)
T TIGR01821       396 RLG  398 (402)
T ss_pred             HcC
Confidence            654

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=5.2e-25  Score=202.71  Aligned_cols=264  Identities=18%  Similarity=0.164  Sum_probs=178.0

Q ss_pred             HHHHHHHHhhcCCC--ceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHh
Q 016612           58 DALESLLAKLDKAD--RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS  134 (386)
Q Consensus        58 ~~l~~~l~~~~g~~--~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  134 (386)
                      .++++.+++++|..  +.|++++|+ +++.++..++++|+ |++++|+|+.+.    ..++..|.+++.++.++ +.   
T Consensus        56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~~~~g~-v~v~~P~y~~y~----~~~~~~g~~~~~v~~~~-~~---  126 (339)
T PRK06959         56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPALLPRGR-VGIAPLAYSEYA----PAFARHGHRVVPLDEAA-DT---  126 (339)
T ss_pred             HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHhcCCCe-EEEcCCCcHHHH----HHHHHCCCEEEeecccc-hh---
Confidence            78999999999884  567777776 88887767788887 888999999885    55567899999888754 22   


Q ss_pred             hhCCCceEEEEeCCCCCCcccccHHHHHH---HHHHcCCEEEEeCCCCCCCc-cC---CCCCCccEEEeccccccccCCC
Q 016612          135 AIGPWTKLVWVESPTNPRQQICDIRKIAE---MAHAHGALLLVDNSIMSPVL-SR---PLELGADIVMHSATKFIAGHSD  207 (386)
Q Consensus       135 ~~~~~~~~v~~~~~~nptG~~~~l~~i~~---la~~~~~~li~D~a~~~~~~-~~---~~~~~~di~~~S~sK~~~g~~g  207 (386)
                       +.+.++++++++||||||.+.+.+++.+   .|++++.++|+||+|..... ..   .......+++.||||.+ |.+|
T Consensus       127 -~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~-gl~G  204 (339)
T PRK06959        127 -LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFF-GLAG  204 (339)
T ss_pred             -ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhc-CCcc
Confidence             3345679999999999999998655554   45678999999999874321 11   11224569999999999 5568


Q ss_pred             ceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCC
Q 016612          208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  284 (386)
Q Consensus       208 ~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  284 (386)
                      +|+||++++ +++.+.+......  ...+...+.++...++.-   ....+.+.++.+.+.+.|++..         +. 
T Consensus       205 lRiGy~v~~-~~li~~l~~~~~~--~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g---------~~-  271 (339)
T PRK06959        205 VRAGFVLAA-PALLAALRDALGA--WTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAHG---------FA-  271 (339)
T ss_pred             hheEEEecC-HHHHHHHHHhcCC--CCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC---------CC-
Confidence            999999986 5566656554432  345566666665555432   2222333444444555555431         11 


Q ss_pred             CCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEE
Q 016612          285 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  364 (386)
Q Consensus       285 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  364 (386)
                           +.     ..+.++++.+++   ...+.+.+..+|+.++...                          ..+++|||
T Consensus       272 -----~~-----~~~~f~~~~~~~---~~~l~~~l~~~GI~vr~~~--------------------------~~~~lRis  312 (339)
T PRK06959        272 -----VH-----ATPLFSWTDDPR---AAALHAALARRGIWTRYFA--------------------------PPPSVRFG  312 (339)
T ss_pred             -----cc-----CcceEEEEeCCC---HHHHHHHHHhCCeEEEECC--------------------------CCCeEEEE
Confidence                 11     123455666542   4567777777788765210                          13469999


Q ss_pred             e-c-cCChHHHHHHHHHHHhcC
Q 016612          365 V-G-IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       365 ~-~-~~~~~~~i~~l~~~l~~~  384 (386)
                      + + .++++.+++.|++.++.+
T Consensus       313 i~~~~~e~~~l~~al~~~~~~~  334 (339)
T PRK06959        313 LPADEAEWQRLEDALAECVPTL  334 (339)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence            9 4 478899999998877654

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.94  E-value=2.2e-24  Score=200.97  Aligned_cols=322  Identities=18%  Similarity=0.165  Sum_probs=215.2

Q ss_pred             CCccceeeccCCCCCCCCCcccceeeeeeeecCCCCCCC-CccccCC--CCc-hHHHHHHHHHhhcCCCceEEeCcHHHH
Q 016612            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG-PYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAA   82 (386)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~a   82 (386)
                      .+....+++|+ +|||+|....|.+.......  +...+ ...-++.  |+. ..+++|+.+++++|.++++++++|..|
T Consensus        98 ~~~~r~~l~Fs-SndYLGL~~~p~v~~a~~~a--i~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~A  174 (476)
T PLN02955         98 KGRFKKLLLFS-GNDYLGLSSHPTISNAAANA--AKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAA  174 (476)
T ss_pred             cCCCceEEEee-ccCccCCCCCHHHHHHHHHH--HHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHH
Confidence            34456889999 99999999988665322111  11111 1122232  553 788999999999999999999999866


Q ss_pred             H-HHHHHh--------------cCCCCEEEecCCCCCcHHHHHhhhcccC-CcEEEEeCCCCHHHHHhhhC---CCceEE
Q 016612           83 L-AAVTHL--------------LGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTCDLDEVASAIG---PWTKLV  143 (386)
Q Consensus        83 l-~~~~~~--------------~~~g~~Vlv~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~d~~~l~~~~~---~~~~~v  143 (386)
                      . .++.++              ..++|.|++....|.+.....+ ..+.. +.++..++..|+++|++.++   .+.++|
T Consensus       175 N~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~-ls~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~~V  253 (476)
T PLN02955        175 NMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR-LAERQGNVEVFVYRHCDMYHLNSLLSSCKMKRKVV  253 (476)
T ss_pred             HHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH-hccccCCceEEEeCCCCHHHHHHHHHhCCCCceEE
Confidence            4 344333              2456677888788887765442 23223 57888889999999998875   356788


Q ss_pred             EEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC---------CCCCCccEEEeccccccccCCCceEEEEE
Q 016612          144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLA  214 (386)
Q Consensus       144 ~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~G~i~  214 (386)
                      +++...++.|.+.|+++|.++|++||+++|+||+|+.+.+..         ....+.|++++|++|.++.    ++|+++
T Consensus       254 v~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~----~GGfi~  329 (476)
T PLN02955        254 VTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC----HGGFIA  329 (476)
T ss_pred             EEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhc----cCceee
Confidence            889999999999999999999999999999999998765532         1123578999999999853    368988


Q ss_pred             EcChhHHHHHHHhhh--hcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchh
Q 016612          215 VKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  289 (386)
Q Consensus       215 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  289 (386)
                      +++ .+.+.+.....  .+++.+++....+.+.+++.+   ..+.++++++.+.+.+.    .        ++.      
T Consensus       330 gs~-~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~----~--------G~~------  390 (476)
T PLN02955        330 CSK-KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL----S--------GVD------  390 (476)
T ss_pred             cHH-HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----c--------CCC------
Confidence            874 46565554332  233455555555554444322   23334444444443331    0        221      


Q ss_pred             hhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCC
Q 016612          290 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED  369 (386)
Q Consensus       290 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~  369 (386)
                             ..++++.+.+.++.....+.+.|...|+.+..      +.+|..              +.+...+||+++..+
T Consensus       391 -------~~sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~------i~yPtV--------------P~g~~rLRi~lsA~H  443 (476)
T PLN02955        391 -------ISSPIISLVVGNQEKALKASRYLLKSGFHVMA------IRPPTV--------------PPNSCRLRVTLSAAH  443 (476)
T ss_pred             -------CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEE------ECCCCC--------------CCCCceEEEeeCCCC
Confidence                   13688999999888888999999888886554      334422              113456999998655


Q ss_pred             hHHHHHHHHHHHh
Q 016612          370 VNDLISDLDKALR  382 (386)
Q Consensus       370 ~~~~i~~l~~~l~  382 (386)
                      .++.|+.+.++|.
T Consensus       444 t~edId~lv~~L~  456 (476)
T PLN02955        444 TTEDVKKLITALS  456 (476)
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555554443

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.94  E-value=1.2e-24  Score=199.77  Aligned_cols=298  Identities=15%  Similarity=0.176  Sum_probs=190.7

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCC-chHHHHHHHHHhhcCC--CceEEeCcHHHHHH-HHHHhcCCCCE
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKA--DRALCFTSGMAALA-AVTHLLGTGEE   95 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~-~~~~~~~~g~~   95 (386)
                      |||+|....|.+......       ....|+  |. ++.+++++.+++++|.  +++++++||++++. ++.+++++||+
T Consensus        27 ~~ylgl~~~~~~~~~~~~-------~~~~~~--g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~   97 (346)
T TIGR03576        27 YDLTGLAGGFKIDEEDLE-------LLETYV--GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRK   97 (346)
T ss_pred             cccccCCCChhHHHHHHH-------HHHHhc--CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCE
Confidence            889998887765422111       111121  44 5899999999999998  67888888899986 56678899999


Q ss_pred             EEec---CCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccc---ccHHHHHHHHHHcC
Q 016612           96 IVAG---DDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI---CDIRKIAEMAHAHG  169 (386)
Q Consensus        96 Vlv~---~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~---~~l~~i~~la~~~~  169 (386)
                      |+++   .|.|.++.    ..++..|.++..  ..++++++.  .+++++|+++. ++|+|.+   .++++|+++|+++|
T Consensus        98 Vli~~~d~p~~~s~~----~~~~l~ga~~~~--~~~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~  168 (346)
T TIGR03576        98 VVHYLPEKPAHPSIP----RSCKLAGAEYFE--SDELSELKK--IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKE  168 (346)
T ss_pred             EEECCCCCCCchhHH----HHHHHcCCEEec--cCCHHHHhh--CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcC
Confidence            9975   35776664    445566776533  346666543  35688888865 5889998   47999999999999


Q ss_pred             CEEEEeCCCCCCCcc---C--CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH
Q 016612          170 ALLLVDNSIMSPVLS---R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (386)
Q Consensus       170 ~~li~D~a~~~~~~~---~--~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (386)
                      +++++||+|+.+...   .  ....+.|+++.|+||++.   |+|+||+++++ ++.+.+...........+++.++++.
T Consensus       169 ~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKala---G~r~G~v~~~~-~li~~l~~~~~~~~~s~~~~~~~aa~  244 (346)
T TIGR03576       169 AIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMD---GPRGGLLAGRK-ELVDKIKSVGEQFGLEAQAPLLAAVV  244 (346)
T ss_pred             CEEEEECCccccccccCCCCCHHHcCCcEEEeccchhcc---ccceEEEEeCH-HHHHHHHHhhcCcccCccHHHHHHHH
Confidence            999999999876421   1  122357899999999664   45799999874 56666665554433335666666666


Q ss_pred             hcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc
Q 016612          245 RGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  322 (386)
Q Consensus       245 ~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  322 (386)
                      .+++...  .....+.++...+.+.++.           +.      ++    ...++++++.++.....+...+.+...
T Consensus       245 ~aL~~~~~~~~~~~l~~r~~~~~~~l~~-----------~~------~~----~~~~~f~~~~~~~~~~~~~~~~ll~~~  303 (346)
T TIGR03576       245 RALEEFELSRIRDAFKRKEEVYLRLFDK-----------LN------VE----RTPTGFVIKGVEEEKLIEIGLDLLRNY  303 (346)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHHh-----------CC------CC----cCCCeEEEEeCCCCCHHHHHHHHHHhC
Confidence            6654321  1122222222222222221           11      11    113456777775321223444555556


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCC-----hHHHHHHHHHHHh
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-----VNDLISDLDKALR  382 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~-----~~~~i~~l~~~l~  382 (386)
                      |+.+.+|..+.                      ..++++|||++..+     ++.+++.|++.|+
T Consensus       304 gV~v~~~~~f~----------------------~~~~~vRis~~~~~~~~~~~~~~~~al~~~~~  346 (346)
T TIGR03576       304 GIITITAVGMP----------------------GASKTLRFDLAAKDAERIGDDYLVEAVKDSLK  346 (346)
T ss_pred             CEEEeCCcccC----------------------CCCCeEEEEEecChHHhcCHHHHHHHHHhccC
Confidence            77776654321                      02578999998644     8999999888764

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.94  E-value=1.4e-24  Score=204.31  Aligned_cols=326  Identities=18%  Similarity=0.147  Sum_probs=205.5

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~   87 (386)
                      ...++++ .+++.|..++|..........+........|... |.+ +++++++++++++|.++.+++++|++++. ++.
T Consensus        33 ~~~id~~-~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~  111 (385)
T TIGR01825        33 KEVINLS-SNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLS  111 (385)
T ss_pred             ceEEEee-ccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence            3456676 4455666455544321111110001122345555 665 89999999999999888899999997754 666


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC----CCceEEEEeCCCCCCcccccHHHHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAE  163 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i~~  163 (386)
                      .++++||.|++++|.|+++...    +...|.++..++..|++++++.+.    +++++|++++++|++|.+.|+++|.+
T Consensus       112 ~~~~~gd~vi~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~  187 (385)
T TIGR01825       112 ALLRKGDIVLSDELNHASIIDG----LRLTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVE  187 (385)
T ss_pred             HhCCCCCEEEEEccccHHHHHH----HHhcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHH
Confidence            6899999999999999887533    334677777777778888887665    36889999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCCCCCCccC---------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh--hcC
Q 016612          164 MAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG  232 (386)
Q Consensus       164 la~~~~~~li~D~a~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~--~~~  232 (386)
                      +|++||+++|+||+|+.+.+..         ....+.|+++.|+||++++ .   +||++++ +++.+.+.....  ..+
T Consensus       188 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~---gG~~~~~-~~~~~~~~~~~~~~~~~  262 (385)
T TIGR01825       188 LAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGV-V---GGYAAGH-KELIEYLKNRARPFLFS  262 (385)
T ss_pred             HHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhc-C---CCEEecC-HHHHHHHHHhCcccccc
Confidence            9999999999999997654321         1224678999999999954 2   4888775 445554443321  122


Q ss_pred             CCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH
Q 016612          233 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  309 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~  309 (386)
                      ...++...+++..+++.+   ....++..++.+.+.+.+++.         +++      ++    ...++++.+.++..
T Consensus       263 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~---------g~~------~~----~~~~~~~~~~~~~~  323 (385)
T TIGR01825       263 TAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL---------GYD------TG----GSETPITPVVIGDE  323 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc---------CCC------CC----CCCCCEEEEEECCH
Confidence            223334333333333221   122333444445555555432         111      11    11235666666544


Q ss_pred             HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcCC
Q 016612          310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~~  385 (386)
                      .....+.+.+...|+.++.+..      |..              ..+..+||++++    .++++++++.+++++++.+
T Consensus       324 ~~~~~~~~~L~~~gi~v~~~~~------~~~--------------~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~~  383 (385)
T TIGR01825       324 KAAQEFSRRLFDEGIFAQSIVF------PTV--------------PRGTARIRNIPTAEHTKDDLDQALDAYEKVGKELG  383 (385)
T ss_pred             HHHHHHHHHHHHCCcEEcccCC------CCC--------------CCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            3456677776666776542221      100              112467999874    4888888888888887654

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.94  E-value=1.2e-24  Score=206.50  Aligned_cols=306  Identities=17%  Similarity=0.168  Sum_probs=191.1

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcHH-HHHHHHH-HhcC-----CCCEEEe-cCCCCCcHHHHHh-
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVT-HLLG-----TGEEIVA-GDDLYGGTDRLLS-  111 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~~~~-~~~~-----~g~~Vlv-~~~~~~~~~~~~~-  111 (386)
                      ...|.+. |.+ +|+++.+++.+.+|.+   +.|++++|+ +++.++. .+++     +||.|++ .+|+|+.+..... 
T Consensus        67 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~  146 (416)
T PRK09440         67 LGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLE  146 (416)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhc
Confidence            3568877 876 8999999998876643   456677666 8887554 4554     6899999 7999998864321 


Q ss_pred             -hhcccCCcEEEEeCC------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          112 -RVTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       112 -~~~~~~g~~~~~v~~------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                       ......+..+..++.      .|+++++  +.++++++++++|+||||.+++   +++|+++|+++|++||+||+|+..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~  224 (416)
T PRK09440        147 EDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPP  224 (416)
T ss_pred             cCceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcccc
Confidence             111222223322222      2677776  3568899999999999999986   778999999999999999999632


Q ss_pred             Cc----cC--CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH--H-
Q 016612          182 VL----SR--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--L-  252 (386)
Q Consensus       182 ~~----~~--~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  252 (386)
                      ..    .+  +...+..|+++|+||+  +.+|+|+||++++ +.+.+.+...........+...+.++...+..-.  . 
T Consensus       225 ~~~~~~~~~~~~~~~~vI~~~SfSK~--~~pGlRiG~~i~~-~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~  301 (416)
T PRK09440        225 FPGIIFSEATPLWNPNIILCMSLSKL--GLPGVRCGIVIAD-EEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRL  301 (416)
T ss_pred             CCCcchhhcCccccCCeEEEeccccc--CCCcceEEEEeCC-HHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHH
Confidence            11    11  1113567999999995  5678999999986 4566656555544444556666666555543211  1 


Q ss_pred             ----HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccC
Q 016612          253 ----RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVS  327 (386)
Q Consensus       253 ----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~  327 (386)
                          ....+.++.+.+.+.+.+..          +.+ +..+  .. +..|.++|+.++. ......+.+.+...|+.+.
T Consensus       302 ~~~~~~~~~~~r~~~~~~~L~~~l----------~~~-~~~~--~~-p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~  367 (416)
T PRK09440        302 SETVIRPFYRQKVQLAIALLRRYL----------PDE-PCLI--HK-PEGAIFLWLWFKDLPITTEELYQRLKARGVLVV  367 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc----------ccC-CeEE--ec-CCCceEEEEECCCCCCCHHHHHHHHHHCCEEEe
Confidence                12223344444555554321          110 0000  01 1135677777754 2234667777777788888


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHhcC
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~~~  384 (386)
                      +|..+.    +..  ....        ....+++|||++  .+++++.++.|.++++++
T Consensus       368 pg~~F~----~~~--~~~~--------~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~~  412 (416)
T PRK09440        368 PGHYFF----PGL--DEDW--------PHAHQCIRMNYVQDDEEIEKGIAILAEEVEKA  412 (416)
T ss_pred             chHhhC----CCC--cccc--------CCcCceEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence            876531    100  0000        001368999996  477888888888887653

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.94  E-value=2.5e-26  Score=214.61  Aligned_cols=282  Identities=21%  Similarity=0.269  Sum_probs=183.9

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcC----CCceEEeCcHH-HHHHHHHH-h-cCCCCEEEecCCCCCcHHHHHhhhc
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGM-AALAAVTH-L-LGTGEEIVAGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~gt-~al~~~~~-~-~~~g~~Vlv~~~~~~~~~~~~~~~~  114 (386)
                      ...+.|.+. |.+ +++++.+++.+..|    .+..+++++|+ +++.++.. + .++||.|++++|+|+.+.    ..+
T Consensus        35 ~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~----~~~  110 (363)
T PF00155_consen   35 SSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYI----EAA  110 (363)
T ss_dssp             TGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHH----HHH
T ss_pred             cccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccceecCCcccccc----ccc
Confidence            445667766 554 55555555553332    23378888888 66666555 4 569999999999999996    556


Q ss_pred             ccCCcEEEEeCC-------CCHHHHHhhhCC------CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCC
Q 016612          115 PKTGVVVKRVNT-------CDLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       115 ~~~g~~~~~v~~-------~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~  178 (386)
                      +..|.+++.++.       .|++++++.+++      +++++++++|+||||.+++   +++|+++|+++|+++|+||+|
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y  190 (363)
T PF00155_consen  111 RLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAY  190 (363)
T ss_dssp             HHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred             cccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeece
Confidence            678899888883       389999998876      6789999999999999986   556666699999999999999


Q ss_pred             CCCCccCC--------CCCC-ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC-
Q 016612          179 MSPVLSRP--------LELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-  248 (386)
Q Consensus       179 ~~~~~~~~--------~~~~-~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  248 (386)
                      +.......        ...+ ..+++.|+||.+ |.+|+|+||++++ +.+.+.+.........  +...+.++...+. 
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRvG~i~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~  266 (363)
T PF00155_consen  191 SDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSF-GLPGLRVGYIVAP-PELIERLRRFQRSGLS--SSPMQAAAAAALSD  266 (363)
T ss_dssp             TTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTT-TSGGGTEEEEEEE-HHHHHHHHHHHHHTTS--SHHHHHHHHHHHHH
T ss_pred             eccccCCCccCcccccccccccceeeeeccccc-cccccccccccch-hhhhhhhhhccccccc--cchhhHHHHHhhhc
Confidence            86544321        1122 369999999999 5678999999995 6677767666654433  4444444333222 


Q ss_pred             ------cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE-eCCHHhHHHHHhhcCc
Q 016612          249 ------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGSLALSKHVVETTKY  321 (386)
Q Consensus       249 ------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~  321 (386)
                            .+......+.++.+.+.+.+++..               ..++    ...++++.|. ++.. ....+.+.+..
T Consensus       267 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~---------------~~~~----~~~~~~~~~~~~~~~-~~~~l~~~L~~  326 (363)
T PF00155_consen  267 PELVEKWLEELRERLRENRDLLREALEEIG---------------ITVL----PPEAGFFLWVRLDPN-DAEELAQELLE  326 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------SEEE----HHSBSSEEEEEESHH-HHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHHhh---------------hhee----eccCccEEEEEcccc-hHHHHHHHHHH
Confidence                  223344445555555556655431               1111    1124555554 4433 45666666666


Q ss_pred             c-eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHH
Q 016612          322 F-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISD  376 (386)
Q Consensus       322 ~-gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~  376 (386)
                      . |+.+.+|..+                      +. +++||++++.   +++++++++
T Consensus       327 ~~gi~v~pg~~~----------------------~~-~~~iRi~~a~~~~e~~~~~~~~  362 (363)
T PF00155_consen  327 EYGILVRPGSYF----------------------GV-PGYIRISLASHSEEDLEEALER  362 (363)
T ss_dssp             HHTEEEEEGGGG----------------------TS-TTEEEEEGGCSCHHHHHHHHHH
T ss_pred             hCCEEEEecCCC----------------------CC-CCEEEEEeccCCHHHHHHHHhh
Confidence            5 7777666542                      22 6679999943   444444443

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PLN02368 alanine transaminase

Probab=99.94  E-value=2.5e-25  Score=208.39  Aligned_cols=199  Identities=15%  Similarity=0.191  Sum_probs=146.5

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcHH-HHHHH-HHHhc-CCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAA-VTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~~-~~~~~-~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ....|++. |.+ +|+++.+++.+.+|.+   +.|++++|+ +++.. +.+++ ++||.|++++|+|+.+.    ..++.
T Consensus        99 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~----~~~~~  174 (407)
T PLN02368         99 GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS----ATISL  174 (407)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH----HHHHH
Confidence            45678887 875 8999999998876642   456566665 88874 45566 79999999999999996    55567


Q ss_pred             CCcEEEEeCCC-------CHHHHHhhhCC------CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          117 TGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       117 ~g~~~~~v~~~-------d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      .|.+++.++.+       |++++++.+++      +++++++++|+||||.+++   +++|.++|++||++||+||+|..
T Consensus       175 ~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~  254 (407)
T PLN02368        175 LGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQ  254 (407)
T ss_pred             cCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            88888888652       78899988863      7899999999999999986   77889999999999999999864


Q ss_pred             CCcc------CC------C-----CCCccEEEeccccccccCCCceEEEEEE--cChhHHHHHHHhhhhcCCCCChhhHH
Q 016612          181 PVLS------RP------L-----ELGADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDCW  241 (386)
Q Consensus       181 ~~~~------~~------~-----~~~~di~~~S~sK~~~g~~g~~~G~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (386)
                      -.+.      +.      .     ..+..+++.|+||.+.+.+|+|+||+++  .++++.+.+...... ....+.+.+.
T Consensus       255 l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~-~~~~~~~~Q~  333 (407)
T PLN02368        255 NIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASI-ALSPNVSGQI  333 (407)
T ss_pred             cccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcc-cCCCCcHHHH
Confidence            3221      10      0     1235799999999986667899999995  245565555554322 2345555565


Q ss_pred             HHHhcCC
Q 016612          242 ICLRGVK  248 (386)
Q Consensus       242 ~~~~~~~  248 (386)
                      ++...+.
T Consensus       334 aa~~~l~  340 (407)
T PLN02368        334 FMGLMVN  340 (407)
T ss_pred             HHHHHhC
Confidence            5555443

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1.8e-25  Score=207.47  Aligned_cols=270  Identities=16%  Similarity=0.162  Sum_probs=174.9

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-HHhcCCC-CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           56 TRDALESLLAKLDKAD-RALCFTSGM-AALAAV-THLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~~~~~~g-~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      ...++++.+++++|.+ +.|++++|+ +++..+ .+++++| |+|++++|.|+.+.    ..++..|++++.++.+    
T Consensus        61 ~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~----~~~~~~g~~v~~v~~~~~~~  136 (354)
T PRK04635         61 QPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA----ISAETFNVGVKALPLTADYQ  136 (354)
T ss_pred             CHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEEecCCCCC
Confidence            3567788888888876 566666665 888755 4577888 89999999998774    4567789999998864    


Q ss_pred             -CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc-CCEEEEeCCCCCCCcc-C---C-CCCCccEEEecccc
Q 016612          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLS-R---P-LELGADIVMHSATK  200 (386)
Q Consensus       128 -d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~-~~~li~D~a~~~~~~~-~---~-~~~~~di~~~S~sK  200 (386)
                       |++.++. + +++++|++++|+||||.+.+.+++.++++.. +++||+||+|...... .   . ......+++.|+||
T Consensus       137 ~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK  214 (354)
T PRK04635        137 LPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSK  214 (354)
T ss_pred             CCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHH
Confidence             5666663 3 6899999999999999999999999988764 7999999998632211 1   0 11245689999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHhhCCCcc
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVK  275 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~  275 (386)
                      ++ |.+|+|+||++++ +++.+.+.....  ....+...+.++...+..     +....+.+.++.+.+.+.|++.+   
T Consensus       215 ~~-~l~GlRlG~~i~~-~~~~~~l~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~---  287 (354)
T PRK04635        215 AF-ALAGARCGFTLAN-EELIEILMRVIA--PYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYG---  287 (354)
T ss_pred             Hh-hhhHHHHhhhhCC-HHHHHHHHhhcC--CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence            99 6678999999987 445554443322  223343333333333321     12222233334444445544332   


Q ss_pred             eEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcC
Q 016612          276 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  355 (386)
Q Consensus       276 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~  355 (386)
                                 +..++    +..+.++++.+++   ...+.+.+...|+.++.+..                       .
T Consensus       288 -----------~~~~~----~~~g~f~~~~~~~---~~~~~~~l~~~gv~v~~~~~-----------------------~  326 (354)
T PRK04635        288 -----------GAKVL----EGNGNYVLAKFDD---VDAVFKALWDAGIVARAYKD-----------------------P  326 (354)
T ss_pred             -----------CceEC----CCCCcEEEEECCC---HHHHHHHHHHCCEEEEECCC-----------------------C
Confidence                       11111    1235677777754   33455556666776653221                       0


Q ss_pred             CCCCeEEEEecc-CChHHHHHHHHH
Q 016612          356 LTEDLVRISVGI-EDVNDLISDLDK  379 (386)
Q Consensus       356 ~~~~~iRis~~~-~~~~~~i~~l~~  379 (386)
                      ..++++|||++. ++++.+++.|++
T Consensus       327 ~~~~~lRis~~~~e~~~~l~~al~~  351 (354)
T PRK04635        327 RLANCIRFSFSNRAETDKLIGLIRN  351 (354)
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            025679999974 677777766654

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.94  E-value=4.4e-24  Score=201.06  Aligned_cols=323  Identities=21%  Similarity=0.194  Sum_probs=205.1

Q ss_pred             ceeeccCCCCCCCCCcc-cceeeeeeeecCCCCCCCCccccCC-CC-chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HH
Q 016612           11 TLLMNFSNEFDPYGALS-TPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~   86 (386)
                      ...++++ .++++|..+ |.+.++........ ......|... |. +.++++++.++++++.++.+++++|++++. ++
T Consensus        39 ~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l  116 (385)
T PRK05958         39 RRMLNFA-SNDYLGLARHPRLIAAAQQAARRY-GAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVL  116 (385)
T ss_pred             ceEEEee-CCCcccCCCCHHHHHHHHHHHHhc-CCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHH
Confidence            4567777 455667533 43444221111100 0111122222 43 478999999999999888899999986654 55


Q ss_pred             HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCC---CceEEEEeCCCCCCcccccHHHHHH
Q 016612           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAE  163 (386)
Q Consensus        87 ~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~  163 (386)
                      ..++++||.|+++++.|+++..    .++..|.+++.++..|++++++.+++   ++.++++++++|++|...++++|.+
T Consensus       117 ~~~~~~gd~V~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~  192 (385)
T PRK05958        117 TALAGKGDLIVSDKLNHASLID----GARLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVA  192 (385)
T ss_pred             HHhCCCCCEEEEeCccCHHHHH----HHHhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHH
Confidence            6678999999999999988763    34567888888888899999998864   3677777889999999999999999


Q ss_pred             HHHHcCCEEEEeCCCCCCCccC---------CC-CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh--hhc
Q 016612          164 MAHAHGALLLVDNSIMSPVLSR---------PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAE  231 (386)
Q Consensus       164 la~~~~~~li~D~a~~~~~~~~---------~~-~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~--~~~  231 (386)
                      +|+++|+++|+||+|+.+.+..         .. ....++++.|+||+++ +.   +|+++.+ +.+.+.+....  ...
T Consensus       193 ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~---Gg~~~~~-~~~~~~~~~~~~~~~~  267 (385)
T PRK05958        193 LARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG-SS---GAAVLGS-ETLIDYLINRARPFIF  267 (385)
T ss_pred             HHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc-cC---CcEEEcC-HHHHHHHHHhCcccee
Confidence            9999999999999997554320         11 1234688999999994 44   3788776 45555443221  112


Q ss_pred             CCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC
Q 016612          232 GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  308 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~  308 (386)
                      +.+.++.+..++..+++.+   ....+...++.+.+.+.+++..         ++      +.    +..++++++.+++
T Consensus       268 ~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~---------~~------~~----~~~~~~~~~~~~~  328 (385)
T PRK05958        268 TTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALG---------FQ------LM----DSQSAIQPLIVGD  328 (385)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------CC------cC----CCCCCEEEEEeCC
Confidence            2334444444443333322   2334455555566666665431         11      11    2246788888866


Q ss_pred             HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       309 ~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      .....++.+.+...|+.+..+....   .                 ..+.+++|||++....++.++.+.+.|++
T Consensus       329 ~~~~~~~~~~l~~~gI~v~~~~~~~---~-----------------~~~~~~lRis~~~~~~~~~i~~~l~~l~~  383 (385)
T PRK05958        329 NERALALAAALQEQGFWVGAIRPPT---V-----------------PAGTSRLRITLTAAHTEADIDRLLEALAE  383 (385)
T ss_pred             HHHHHHHHHHHHHCCceEecccCCC---C-----------------CCCCceEEEEecCCCCHHHHHHHHHHHHh
Confidence            5456678888888888776532100   0                 01246799999754445555555555443

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.94  E-value=1.5e-24  Score=202.00  Aligned_cols=165  Identities=21%  Similarity=0.237  Sum_probs=132.7

Q ss_pred             chHHHHHHHHHhhcCCC--c-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      ...+++++.+++++|.+  + .+++++|++++. ++.+++++||.|+++++.|++..  +...++..|.+++.++.+   
T Consensus        32 ~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  109 (356)
T cd06451          32 ALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGE  109 (356)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCCC
Confidence            46889999999999984  3 445666789987 45567899999999988876531  235566788888888643   


Q ss_pred             --CHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 --d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                        |++++++.+++ ++++|++++++||+|.+.|+++|.++|+++|+++++|++++.|... +....+.|++++|+||+++
T Consensus       110 ~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~  189 (356)
T cd06451         110 AVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALG  189 (356)
T ss_pred             CCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhcc
Confidence              78999999986 8999999999999999999999999999999999999998866532 3344578999999999998


Q ss_pred             cCCCceEEEEEEcChhHHHHH
Q 016612          204 GHSDVMAGVLAVKGERLAKEL  224 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~  224 (386)
                      +|.|  +|+++.+++ +.+.+
T Consensus       190 ~p~g--~G~l~~~~~-~~~~~  207 (356)
T cd06451         190 APPG--LGPIAFSER-ALERI  207 (356)
T ss_pred             CCCC--cceeEECHH-HHHHH
Confidence            8876  799998754 44433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PLN02397 aspartate transaminase

Probab=99.94  E-value=1.1e-24  Score=206.25  Aligned_cols=283  Identities=15%  Similarity=0.141  Sum_probs=174.7

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC---ceE-----EeCcHHHHH-HHHHHhcCCCCEEEecCCCCCcHHHHHhhhc
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RAL-----CFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i-----~~~~gt~al-~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~  114 (386)
                      ...|++. |.+ +|+++.+++.+..+..   +.+     +.++|+.++ ..++.++.|||+|++++|.|+.+.    .++
T Consensus        84 ~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~----~~~  159 (423)
T PLN02397         84 NKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHH----NIF  159 (423)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHH----HHH
Confidence            4479888 887 7888888886554321   222     223333333 345556679999999999999986    556


Q ss_pred             ccCCcEEEEeCC-------CCHHHHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          115 PKTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       115 ~~~g~~~~~v~~-------~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      +..|.+++.++.       .|++.+++.+.   ++++++++++||||||.+++   +++|+++|++||++||+||+|..-
T Consensus       160 ~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l  239 (423)
T PLN02397        160 RDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGF  239 (423)
T ss_pred             HHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCc
Confidence            678888888864       16777776664   56788989999999999986   678899999999999999998643


Q ss_pred             CccC------C---C--CCCccEEEeccccccccCCCceEEEEE--EcChhHHH----HHHHhhhhcCCCCChhhHHHHH
Q 016612          182 VLSR------P---L--ELGADIVMHSATKFIAGHSDVMAGVLA--VKGERLAK----ELYFLQNAEGSGLAPFDCWICL  244 (386)
Q Consensus       182 ~~~~------~---~--~~~~di~~~S~sK~~~g~~g~~~G~i~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  244 (386)
                      .+..      .   .  .....++++||||.+ +++|+|+||++  ..++.+.+    .+.........+.+...+.++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~-~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  318 (423)
T PLN02397        240 ASGDLDADAQSVRMFVEDGHEILVAQSYAKNM-GLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVA  318 (423)
T ss_pred             cCCchhhhhHHHHHHHhcCCcEEEEEECcccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Confidence            3211      0   1  112468999999999 66789999985  44443332    2222222222234444455544


Q ss_pred             hcCCcH----------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE-eCCHHhHH
Q 016612          245 RGVKTM----------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGSLALSK  313 (386)
Q Consensus       245 ~~~~~~----------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~  313 (386)
                      ..+..-          ....+.+.++.+.+.+.|++..         .+.  ++.+.    ...|+++.|. ++ .++++
T Consensus       319 ~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~---------~~~--~~~~~----~p~gg~fl~~~l~-~~~~~  382 (423)
T PLN02397        319 TILGDPELFSEWTKELKGMADRIISMRQKLYDALEARG---------SPG--DWSHI----TKQIGMFSFTGLN-KEQVD  382 (423)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCC--CCCcc----cCCceEEEecCCC-HHHHH
Confidence            444331          1112233333344444444321         000  11111    2245555554 54 34666


Q ss_pred             HHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhc
Q 016612          314 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRT  383 (386)
Q Consensus       314 ~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~  383 (386)
                      +++++.++.   +.                             .++  |+++.   .+++++++++|+++++.
T Consensus       383 ~Ll~~~~V~---v~-----------------------------~~~--Ri~~~~~~~~~i~~~~~~i~~~~~~  421 (423)
T PLN02397        383 RMTKEYHIY---MT-----------------------------RDG--RISMAGLSSKNVPYLADAIHAVVTN  421 (423)
T ss_pred             HHHHhCCEE---EC-----------------------------CCC--eEEEeeCCHHHHHHHHHHHHHHHhc
Confidence            666664443   21                             122  77774   58899999999999864

>PRK03321 putative aminotransferase; Provisional

Probab=99.94  E-value=6.9e-25  Score=203.76  Aligned_cols=271  Identities=15%  Similarity=0.193  Sum_probs=186.0

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           56 TRDALESLLAKLDKAD-RALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      ...++++.++++++.+ +.|++++|+ +++..+ ..++++||+|+++.|.|..+.    ..++..|.+++.++.+     
T Consensus        58 g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~  133 (352)
T PRK03321         58 GAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYP----ILVQVAGATPVQVPLTPDHTH  133 (352)
T ss_pred             cHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHH----HHHHHcCCEEEEccCCCCCCC
Confidence            4567778888888776 467777787 666644 557899999999999997664    3456788998888864     


Q ss_pred             CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHH--cCCEEEEeCCCCCCCcc----CC----CCCCccEEEec
Q 016612          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS----RP----LELGADIVMHS  197 (386)
Q Consensus       128 d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~~~~li~D~a~~~~~~~----~~----~~~~~di~~~S  197 (386)
                      |++++++.++++++++++++|+||||.+.+.++|.++|+.  +++++|+|++|......    ..    ...+..++++|
T Consensus       134 ~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S  213 (352)
T PRK03321        134 DLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRT  213 (352)
T ss_pred             CHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEec
Confidence            7899999998899999999999999999999999999987  59999999998632221    11    11245789999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCc
Q 016612          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRV  274 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~  274 (386)
                      +||.+ |.+|+|+||++++ +.+.+.+....  .....+...+.++...+...   ..+.++..+....+.+.+++.   
T Consensus       214 ~SK~~-g~~GlRiG~~v~~-~~~~~~~~~~~--~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~---  286 (352)
T PRK03321        214 FSKAY-GLAGLRVGYAVGH-PEVIAALRKVA--VPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA---  286 (352)
T ss_pred             chHHh-hhHHHhhhhhcCC-HHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC---
Confidence            99999 5568999999986 55666555432  23455666665554444332   222222223333333333322   


Q ss_pred             ceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhc
Q 016612          275 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  354 (386)
Q Consensus       275 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~  354 (386)
                            ++      .+    .+..|.++++.++.  ...++.+.+...|+.+.+  +                       
T Consensus       287 ------~~------~~----~~~~g~~i~i~l~~--~~~~~~~~l~~~gI~v~~--~-----------------------  323 (352)
T PRK03321        287 ------GW------TV----PPSQANFVWLPLGE--RTADFAAAAAEAGVVVRP--F-----------------------  323 (352)
T ss_pred             ------CC------cc----CCCCCCEEEEeCCC--CHHHHHHHHHHCCEEEEc--c-----------------------
Confidence                  11      11    12246778887743  245677777777776543  0                       


Q ss_pred             CCCCCeEEEEec-cCChHHHHHHHHHHHh
Q 016612          355 GLTEDLVRISVG-IEDVNDLISDLDKALR  382 (386)
Q Consensus       355 ~~~~~~iRis~~-~~~~~~~i~~l~~~l~  382 (386)
                        +..+|||+++ .++++++++.|++++.
T Consensus       324 --~~~~iRi~~~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        324 --AGEGVRVTIGAPEENDAFLRAARAWRA  350 (352)
T ss_pred             --CCCcEEEeeCCHHHHHHHHHHHHHHhc
Confidence              1234999997 4999999999998764

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.1e-24  Score=202.77  Aligned_cols=309  Identities=18%  Similarity=0.227  Sum_probs=188.1

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHH-H
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAV-T   87 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~-~   87 (386)
                      ..+++++.+...++..+ .+.++  +.. .. . ....|...|   ...+++.++++++.+ +.|++++|+ ++++.+ .
T Consensus        30 ~~~i~l~~~~~~~~~~~-~~~~~--~~~-~~-~-~~~~Y~~~~---~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~  100 (357)
T PRK14809         30 DDLVKLSSNENPHGPSP-AAVEA--IRE-AA-E-RVHSYPKAS---HADLTAALADRWDVSPEQVWLANGGDGALDYLAR  100 (357)
T ss_pred             cceeEecCCCCCCCCCH-HHHHH--HHH-HH-h-hhhcCCCCC---HHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            35778885544455332 22221  111 11 1 134565434   345666666666665 456666665 888754 5


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRK  160 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~  160 (386)
                      +++++||.|++++|+|+.+.    ..+...|..++.++..       +.+++.+.. ++++++++++|+||||.+.+.++
T Consensus       101 ~~~~~gd~V~v~~P~y~~~~----~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~  175 (357)
T PRK14809        101 AMLDPGDTVLVPDPGFAYYG----MSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDE  175 (357)
T ss_pred             HhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHH
Confidence            57899999999999997664    3344567777666542       455565544 46899999999999999998777


Q ss_pred             HHHHHHHc--CCEEEEeCCCCCCCcc-C----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCC
Q 016612          161 IAEMAHAH--GALLLVDNSIMSPVLS-R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (386)
Q Consensus       161 i~~la~~~--~~~li~D~a~~~~~~~-~----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~  233 (386)
                      +.++++..  +++||+||+|..-... .    ....+..+++.|+||.+ +.+|+|+||+++++ ++.+.+.....  ..
T Consensus       176 ~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~-~~~~~~~~~~~--~~  251 (357)
T PRK14809        176 VEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAY-GLAGLRLGYAVVPE-EWADAYARVNT--PF  251 (357)
T ss_pred             HHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHh-cCcchhheeeecCH-HHHHHHHHhCC--CC
Confidence            77776653  7899999998632211 1    11124679999999999 55689999999874 45555544332  23


Q ss_pred             CCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHH
Q 016612          234 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  313 (386)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  313 (386)
                      ..+...+.++...+.. ....++..+..+...+++.+.          |...    .+    +..|.++++.+.+   ..
T Consensus       252 ~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~----------L~~~----~~----~~~g~f~~~~~~~---~~  309 (357)
T PRK14809        252 AASELACRAGLAALDD-DEHVERTVETARWAREYIREE----------LDAP----TW----ESAGNFVLAEVGD---AS  309 (357)
T ss_pred             CCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHH----------hcCc----cC----CCCCCEEEEECCC---HH
Confidence            4455555555555443 122222222222222222221          1110    00    1246778887753   34


Q ss_pred             HHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-cCChHHHHHHHHHHHh
Q 016612          314 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-IEDVNDLISDLDKALR  382 (386)
Q Consensus       314 ~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~~~~~i~~l~~~l~  382 (386)
                      ++.+.+...|+.+.+|..+.                       .+++|||+++ .+++++.+++|+++++
T Consensus       310 ~~~~~l~~~gv~v~~g~~f~-----------------------~~~~iRls~~~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        310 AVAEAAQERGVIVRDCTSFG-----------------------LPECIRITCGTREETERAVEVLNEVLA  356 (357)
T ss_pred             HHHHHHHHCCEEEEECccCC-----------------------CCCeEEEecCCHHHHHHHHHHHHHHhc
Confidence            56666667788877776421                       1367999997 4778888888887765

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.93  E-value=3.7e-24  Score=202.12  Aligned_cols=160  Identities=21%  Similarity=0.198  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHh----cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAV-THL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~----~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..+++++.+++++|.+  +.++++++|++++.+ ..+    .++||+|+++.++|+++...+.. ++..|++++.++.+ 
T Consensus        48 ~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~-~~~~g~~v~~v~~~~  126 (402)
T TIGR02006        48 AVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRY-LEREGFEVTYLPPKS  126 (402)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHH-HHhcCCEEEEEccCC
Confidence            5777889999999976  345555556888744 332    36899999999999988766543 34678999888763 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                          |++++++.++++++++++++++||||.+.|+++|.++|+++|+++++|++++.|..+ +....+.|++++|++|++
T Consensus       127 ~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~  206 (402)
T TIGR02006       127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIY  206 (402)
T ss_pred             CCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhc
Confidence                899999999989999999999999999999999999999999999999999988765 444568999999999976


Q ss_pred             ccCCCceEEEEEEcChh
Q 016612          203 AGHSDVMAGVLAVKGER  219 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~  219 (386)
                       ||.|  .|+++++++.
T Consensus       207 -gp~G--~G~l~~~~~~  220 (402)
T TIGR02006       207 -GPKG--IGALYVRRKP  220 (402)
T ss_pred             -CCCc--eEEEEEccCC
Confidence             6777  6888887543

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.93  E-value=1.3e-24  Score=204.64  Aligned_cols=161  Identities=20%  Similarity=0.180  Sum_probs=135.0

Q ss_pred             chHHHHHHHHHhhcCCC--c-eEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      .+++++++.+++++|.+  + .+++++|++++.+ +..++++||+|+++++.|++..  |..+++..|.+++.++.+   
T Consensus        42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~~  119 (401)
T PLN02409         42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQ  119 (401)
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCCC
Confidence            47899999999999875  2 4566667788864 5567899999999999887653  446677889998888753   


Q ss_pred             --CHHHHHhhhCC----CceEEEEeCCCCCCcccccHHHHHHH--HHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecc
Q 016612          128 --DLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (386)
Q Consensus       128 --d~~~l~~~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l--a~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~  198 (386)
                        |++++++.+++    ++++|++++++|+||.+.|+++|.++  |+++|+++++|++++.+..+ +..++++|+++.|.
T Consensus       120 ~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~  199 (401)
T PLN02409        120 GADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGS  199 (401)
T ss_pred             CCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcC
Confidence              78999998875    79999999999999999999999999  99999999999999987764 34557899999999


Q ss_pred             ccccccCCCceEEEEEEcChh
Q 016612          199 TKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      |||+++|+|  .|+++.+++.
T Consensus       200 ~K~l~~P~G--~G~l~~~~~~  218 (401)
T PLN02409        200 QKALSLPTG--LGIVCASPKA  218 (401)
T ss_pred             ccccCcCCC--cceeEECHHH
Confidence            999998887  7999987553

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.93  E-value=2.3e-24  Score=202.21  Aligned_cols=159  Identities=21%  Similarity=0.232  Sum_probs=135.7

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC------
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------  126 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~------  126 (386)
                      .+..+++++.+++++|.++.++++++++++. ++.+++++||+|+++.++|.+...    .++..|++++.++.      
T Consensus        62 ~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~----~~~~~G~~~~~v~~~~~~~~  137 (387)
T PRK09331         62 KPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYV----AAERAGLNVREVPKTGYPEY  137 (387)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHH----HHHHcCCEEEEEeCccCcCC
Confidence            4579999999999999998888888888886 566688999999999999887753    34567899998876      


Q ss_pred             -CCHHHHHhhhC-------CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEec
Q 016612          127 -CDLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHS  197 (386)
Q Consensus       127 -~d~~~l~~~~~-------~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S  197 (386)
                       .|++++++.++       +++++|++++|+|++|.+.|+++|.++|+++|+++++|++|+.|..+ +....++|++++|
T Consensus       138 ~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s  217 (387)
T PRK09331        138 KITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGS  217 (387)
T ss_pred             CcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEee
Confidence             27899998875       26899999999999999999999999999999999999999988653 3345689999999


Q ss_pred             cccccccCCCceEEEEEEcCh
Q 016612          198 ATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      +||++++++|  +|+++++++
T Consensus       218 ~~K~l~~~~~--~G~l~~~~~  236 (387)
T PRK09331        218 GHKSMAASAP--SGVLATTEE  236 (387)
T ss_pred             CcccccCCCC--EEEEEECHH
Confidence            9999977654  899998754

>PRK07908 hypothetical protein; Provisional

Probab=99.93  E-value=5e-24  Score=197.61  Aligned_cols=278  Identities=16%  Similarity=0.183  Sum_probs=179.9

Q ss_pred             ccccCC-CCchHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEE
Q 016612           47 YDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (386)
Q Consensus        47 ~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (386)
                      ..|.+. |.   .++++.+++++|.+ +.|++++|+ +++..+.. +++| .+++..|+|..+.    ..++..|++++.
T Consensus        52 ~~Y~~~~g~---~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l~~~-~viv~~P~y~~~~----~~~~~~G~~i~~  122 (349)
T PRK07908         52 AAYPSTEDE---RRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-LRPR-RAAVVHPSFTEPE----AALRAAGIPVHR  122 (349)
T ss_pred             hcCCCccch---HHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-cCCC-eEEEeCCCChHHH----HHHHHcCCEEEe
Confidence            346554 43   35556666666665 566666665 88987666 6775 5677889997774    455678999998


Q ss_pred             eCCC-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCC---CccCC--CCCCccE
Q 016612          124 VNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP---VLSRP--LELGADI  193 (386)
Q Consensus       124 v~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~---~~~~~--~~~~~di  193 (386)
                      ++.+     |++    .++++++++++++|+||||.+.+.++|.++|++ +.++|+||+|+.-   .....  ...+..+
T Consensus       123 v~~~~~~~~d~~----~l~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i  197 (349)
T PRK07908        123 VVLDPPFRLDPA----AVPDDADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVL  197 (349)
T ss_pred             eccCcccCcChh----HhccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEE
Confidence            8864     333    345678999999999999999999999999975 7889999998631   11111  1224568


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHH
Q 016612          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       194 ~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l  268 (386)
                      ++.|+||.+ +.+|+|+||++++ +.+.+.+......  ...+.....++...+.     .+....+.+.++.+.+.+.|
T Consensus       198 ~i~S~SK~~-~l~GlRiG~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L  273 (349)
T PRK07908        198 VLRSLTKTW-SLAGLRVGYALGA-PDVLARLTRGRAH--WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGL  273 (349)
T ss_pred             EEeeccccc-CCccceeeeeecC-HHHHHHHHhcCCC--CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            889999998 6678999999986 4455555443332  2334444433322222     12222233333444444444


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCH
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  348 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~  348 (386)
                      ++.               ++.+.  . ...+.++++.+++   .+.+.+.++..|+.+.+|..+.               
T Consensus       274 ~~~---------------~~~~~--~-p~~g~~~~~~~~~---~~~~~~~l~~~gI~v~~g~~f~---------------  317 (349)
T PRK07908        274 RAV---------------GARVV--D-PAAAPFVLVRVPD---AELLRKRLRERGIAVRRGDTFP---------------  317 (349)
T ss_pred             HhC---------------CcEec--c-CCCceEEEEECCc---HHHHHHHHHhCCEEEEECCCCC---------------
Confidence            432               11111  1 1247788888865   3466667777788887776521               


Q ss_pred             HHHHhcCCCCCeEEEEec-cCChHHHHHHHHHHHhcC
Q 016612          349 EVRQARGLTEDLVRISVG-IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       349 ~~~~~~~~~~~~iRis~~-~~~~~~~i~~l~~~l~~~  384 (386)
                            +..+++||||++ .++++++++.|++.+.+.
T Consensus       318 ------~~~~~~vRis~~~~~~~~~l~~al~~~~~~~  348 (349)
T PRK07908        318 ------GLDPDYLRLAVRPRAEVPVLVQALAEILKAG  348 (349)
T ss_pred             ------CCCCCeEEEEeCCCccHHHHHHHHHHHHhcc
Confidence                  113578999997 489999999999887654

>PRK02948 cysteine desulfurase; Provisional

Probab=99.93  E-value=3.7e-24  Score=201.08  Aligned_cols=300  Identities=16%  Similarity=0.176  Sum_probs=188.4

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEeCcH-HHHHHH-HHHhc----CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD-RALCFTSG-MAALAA-VTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~g-t~al~~-~~~~~----~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..+++++.+++++|.+ +.|++++| ++++.. +.+++    ++||.|++++..|+++...+. .++..|.+++.++.+ 
T Consensus        44 ~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~-~~~~~g~~v~~v~~~~  122 (381)
T PRK02948         44 LLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQ-SLESQGYTVTEIPVDK  122 (381)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHH-HHHhCCCEEEEEeeCC
Confidence            5788899999999865 55655555 688764 44443    578999999999988876663 456789998888753 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                          |++++++.+++++++|++++++||||.+.|+++|.++|+++|+++++|++++.+... +....++|++++|+||++
T Consensus       123 ~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~  202 (381)
T PRK02948        123 SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIY  202 (381)
T ss_pred             CCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcC
Confidence                789999999889999999999999999999999999999999999999998877643 334568999999999987


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHh---hh-hcCCCCChhhHHHHHhcCCcH----HHHHHHHHHHHHHHHHHHhhCCCc
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFL---QN-AEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRV  274 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~  274 (386)
                       ||+|  .|+++++++.........   .. ......+......+..+++..    ....++..+..+.+.+.+++.. +
T Consensus       203 -gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~  278 (381)
T PRK02948        203 -GPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLP-L  278 (381)
T ss_pred             -CCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence             6777  688888754211111100   00 011123333333333333322    2222333344444444444332 0


Q ss_pred             ceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccc-ccccccccCCCCCHHHHHh
Q 016612          275 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL-ISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       275 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~-~~~p~~~~~~~~~~~~~~~  353 (386)
                       .....+           ........++.+.++... .+.+...+..+||.++.|..++. +..|.         ....+
T Consensus       279 -~v~~~~-----------~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~gI~v~~g~~c~~~~~~p~---------~~~~~  336 (381)
T PRK02948        279 -PIEVEG-----------HSTSCLPHIIGVTIKGIE-GQYTMLECNRRGIAISTGSACQVGKQEPS---------KTMLA  336 (381)
T ss_pred             -CEEEeC-----------CCccCcCCEEEEEeCCCC-HHHHHHhcccCCEEEEchHhcCCCCCCCC---------HHHHH
Confidence             011000           000112346667665433 45666777888999888765321 11111         11112


Q ss_pred             cCC----CCCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          354 RGL----TEDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       354 ~~~----~~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                      ++.    ..+++|+|++.    ++++.+++.|++.++
T Consensus       337 ~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~  373 (381)
T PRK02948        337 IGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGN  373 (381)
T ss_pred             cCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            222    24789999985    555555555555443

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.93  E-value=5.2e-24  Score=201.65  Aligned_cols=324  Identities=19%  Similarity=0.169  Sum_probs=204.3

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCC-CccccC--CC-CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-H
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG-PYDYTR--SG-NPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~y~~--~g-~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~   85 (386)
                      ..+++++ +|||+|..++|.........  +...+ ....++  +| .+...++++.+++++|.++.+++++|+++.. +
T Consensus        46 ~~~~~~~-s~dylgl~~~p~v~~a~~~~--~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~a  122 (407)
T PRK09064         46 REVTVWC-SNDYLGMGQHPKVIEAMIEA--LDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDAT  122 (407)
T ss_pred             ceEEEEE-CCCCcCCCCCHHHHHHHHHH--HHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHH
Confidence            4578999 99999999777543211111  11111 111122  23 3578999999999999888999999997754 4


Q ss_pred             HHHhc--CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC----CCceEEEEeCCCCCCcccccHH
Q 016612           86 VTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIR  159 (386)
Q Consensus        86 ~~~~~--~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~  159 (386)
                      +..+.  .+++.|+.....|.+....+    ...+.++..++..|++++++.++    +++++|++++++||+|.+.|++
T Consensus       123 i~~l~~~~~~~~i~~~~~~h~s~~~~~----~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~  198 (407)
T PRK09064        123 LSTLAKLIPDCVIFSDELNHASMIEGI----RRSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIA  198 (407)
T ss_pred             HHHHhCCCCCCEEEEeCcchHHHHHHH----HHcCCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHH
Confidence            44343  37776666666665554322    34566777777778888888775    5789999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCCCCCCccC---------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh
Q 016612          160 KIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~  230 (386)
                      +|.++|+++|+++|+||+|+.|.+..         ......|++++|+||.++. .   +|+++++ +++.+.+......
T Consensus       199 ~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~---GG~~~~~-~~~~~~l~~~~~~  273 (407)
T PRK09064        199 EICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGV-M---GGYIAGS-AALVDAVRSYAPG  273 (407)
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhc-c---CceEecC-HHHHHHHHHhCcc
Confidence            99999999999999999997554321         0112458999999999953 3   4888876 4555544433221


Q ss_pred             --cCCCCChhhHHHHHhcCCcHH---HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE
Q 016612          231 --EGSGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  305 (386)
Q Consensus       231 --~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~  305 (386)
                        ...+.++....++..+++.+.   ...++..++.+.+.+.+++.         +++..          ...++++.+.
T Consensus       274 ~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~---------g~~~~----------~~~~~iv~i~  334 (407)
T PRK09064        274 FIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA---------GIPVM----------PNESHIVPVM  334 (407)
T ss_pred             ccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc---------CCCCC----------CCCCCEEEEE
Confidence              123445544444444443322   22344455555555555542         11111          1235677777


Q ss_pred             eCCHHhHHHHHhhcC-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHH
Q 016612          306 TGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  380 (386)
Q Consensus       306 ~~~~~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~  380 (386)
                      +++......+.+.+. ..|+.+++..      +|..              ..+.+++||+++.    ++++++++.|+++
T Consensus       335 ~~~~~~~~~l~~~L~~~~gi~v~~~~------~p~~--------------~~~~~~lRis~~~~~t~edi~~l~~~l~~~  394 (407)
T PRK09064        335 VGDPEKCKKASDMLLEEHGIYVQPIN------YPTV--------------PRGTERLRITPTPFHTDEMIDHLVEALVEV  394 (407)
T ss_pred             eCCHHHHHHHHHHHHHhCCEEEeeEC------CCCC--------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            765444666777664 3477655421      1100              0123569999974    7777777777777


Q ss_pred             HhcCC
Q 016612          381 LRTGP  385 (386)
Q Consensus       381 l~~~~  385 (386)
                      +++.+
T Consensus       395 ~~~~~  399 (407)
T PRK09064        395 WARLG  399 (407)
T ss_pred             HHHcC
Confidence            76553

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.93  E-value=2.5e-24  Score=202.89  Aligned_cols=166  Identities=19%  Similarity=0.149  Sum_probs=125.5

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCC----Cce-EEeCcHH-HHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhh
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKA----DRA-LCFTSGM-AALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRV  113 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~-i~~~~gt-~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~  113 (386)
                      ....|++. |.+ +|+++.+++.+..+.    ++. +++|+|+ +|+..+..   .++|||+|++++|+|+.+.    .+
T Consensus        61 ~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~----~~  136 (396)
T PRK09257         61 TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHR----AI  136 (396)
T ss_pred             cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHH----HH
Confidence            34468887 886 899999988765432    233 3566664 99875532   3589999999999999996    55


Q ss_pred             cccCCcEEEEeCC-------CCHHHHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          114 TPKTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       114 ~~~~g~~~~~v~~-------~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      ++..|.+++.++.       .|++++++.+.   +++.++++++||||||.+.+   +++|+++|++||+++|+|++|..
T Consensus       137 ~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~  216 (396)
T PRK09257        137 FEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQG  216 (396)
T ss_pred             HHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccc
Confidence            6678899888874       17788888765   34567777999999999986   78899999999999999999864


Q ss_pred             CCcc--C---C----C-CCCccEEEeccccccccCCCceEEEEEE
Q 016612          181 PVLS--R---P----L-ELGADIVMHSATKFIAGHSDVMAGVLAV  215 (386)
Q Consensus       181 ~~~~--~---~----~-~~~~di~~~S~sK~~~g~~g~~~G~i~~  215 (386)
                      -...  .   +    . ..+..++++|+||.+ +++|+|+||+++
T Consensus       217 l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRiG~~~~  260 (396)
T PRK09257        217 FGDGLEEDAYGLRAFAAAGLELLVASSFSKNF-GLYGERVGALSV  260 (396)
T ss_pred             cccchHHHHHHHHHHHhcCCcEEEEEEcCCcC-ccccccceeEEE
Confidence            2221  0   0    1 123579999999999 667899999984

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.1e-24  Score=200.64  Aligned_cols=271  Identities=18%  Similarity=0.205  Sum_probs=175.3

Q ss_pred             ccccCCCCchHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      ..|...|   ..++++.++++++.+ +.|++++|+ +++..+...+ +||+|+++.|.|+.+.    .+++..|.+++.+
T Consensus        50 ~~Y~~~g---~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~-~gd~V~v~~P~y~~~~----~~~~~~g~~~~~v  121 (337)
T PRK03967         50 NRYPHIT---SDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF-EGKHIVITPPTFGMYS----FYAKLNGIPVIDV  121 (337)
T ss_pred             ccCCCCC---HHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh-CCCeEEEeCCChHHHH----HHHHHcCCeEEEe
Confidence            4454334   345666666666655 556566665 8888766655 7999999999998664    4556788999888


Q ss_pred             CCC-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC----CCCCCccEEE
Q 016612          125 NTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVM  195 (386)
Q Consensus       125 ~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~----~~~~~~di~~  195 (386)
                      +.+     |++++++.. ++++++++++|+||||.+.+.++|.++++ +++++|+||+|..-....    .......+++
T Consensus       122 ~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l  199 (337)
T PRK03967        122 PLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILL  199 (337)
T ss_pred             ecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEE
Confidence            763     677887765 57889999999999999999999999995 699999999986321111    1112457999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH---HHHHHHHHHHHHHHHHhhCC
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~  272 (386)
                      .|+||.+ +.+|+|+||++++ +.+.+.+......  ...+...+.++...++....   +.....++.+.+.+.|.+. 
T Consensus       200 ~S~SK~~-~l~GlRiG~iv~~-~~~i~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-  274 (337)
T PRK03967        200 RTFSKAF-GLAGIRAGYAIAN-EEIIDALYRIKPP--FSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY-  274 (337)
T ss_pred             ecchHhh-cchhhhheeeecC-HHHHHHHHhhcCC--CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence            9999999 5568999999986 4565555544332  34456666665554443221   1112222222222222211 


Q ss_pred             CcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHH
Q 016612          273 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  352 (386)
Q Consensus       273 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~  352 (386)
                                       .   . +..+.++++.++       +.+.+...|+.++.+..                     
T Consensus       275 -----------------~---~-~~~~~~~~~~~~-------~~~~l~~~gi~v~~~~~---------------------  305 (337)
T PRK03967        275 -----------------A---Y-PSDANFLLLKLD-------AYDYLLENGIVVRKLSG---------------------  305 (337)
T ss_pred             -----------------c---C-CCCCcEEEEhHH-------HHHHHHHCCEEEEeCCC---------------------
Confidence                             0   0 223566666542       33444445666543221                     


Q ss_pred             hcCCCCCeEEEEecc-CChHHHHHHHHHHHhcC
Q 016612          353 ARGLTEDLVRISVGI-EDVNDLISDLDKALRTG  384 (386)
Q Consensus       353 ~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~~  384 (386)
                         ..++++||+++. ++.+++++.|++.++..
T Consensus       306 ---~~~~~~Ri~~~~~~~~~~l~~~l~~~~~~~  335 (337)
T PRK03967        306 ---RLEGHIRVTVGKREENDEFIKALKEIKEGY  335 (337)
T ss_pred             ---CCCCeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence               125679999986 78899999998877644

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.93  E-value=2e-24  Score=202.12  Aligned_cols=289  Identities=25%  Similarity=0.303  Sum_probs=199.5

Q ss_pred             chHHHHHHHHHhhcCCCc---eEEeCcHHHHHHHH-HHh---cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           55 PTRDALESLLAKLDKADR---ALCFTSGMAALAAV-THL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~---~i~~~~gt~al~~~-~~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      +..+++++.+++++|.+.   .++++++|.+++.+ .++   +++|++|++.+.+|++....|..+.+..|++++.++.+
T Consensus        43 ~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~  122 (371)
T PF00266_consen   43 EILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD  122 (371)
T ss_dssp             HHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG
T ss_pred             HHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            367899999999999874   44556667888754 445   69999999999999999888888888999999888752


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |++++++.+++++++|++++.+|.+|...|+++|.++||++|+++++|.+++.|..+ +..+.++|++++|.+| 
T Consensus       123 ~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-  201 (371)
T PF00266_consen  123 PGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-  201 (371)
T ss_dssp             TTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-
T ss_pred             ccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecccc-
Confidence                 899999999999999999999999999999999999999999999999999988865 4556799999999999 


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhcC--------------------CCCCh-hhHHHHHhcCCcH-----HHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEG--------------------SGLAP-FDCWICLRGVKTM-----ALRVE  255 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~-----~~~~~  255 (386)
                      ++||+|  .|+++++++ ..+.++.......                    .+..+ .....+..+++.+     ....+
T Consensus       202 l~gp~G--~g~l~v~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~  278 (371)
T PF00266_consen  202 LGGPPG--LGFLYVRPE-AIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRE  278 (371)
T ss_dssp             TTSSST--EEEEEEEHH-HHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCc--hhhheehhh-hhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchh
Confidence            778998  699999865 4333422111110                    11111 1122222222221     11223


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhh-hccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY-SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  334 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~  334 (386)
                      +..+..+.+.+.+.+.+.              ..++. .....+++++++.+++.+ ...+.+.+...+|.++.|.... 
T Consensus       279 ~~~~l~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~L~~~~I~~~~G~~~~-  342 (371)
T PF00266_consen  279 RIRELAEYLREALEELPG--------------IEVLGPDDEPRRPSIVSFNLPGSD-ADDVVKYLEERGIAVSTGSACA-  342 (371)
T ss_dssp             HHHHHHHHHHHHHHHTTT--------------EEESSSSCGGBGTTEEEEEETTSS-HHHHHHHHHHHTEEEEESTTTC-
T ss_pred             hhhhHHHHHHhhhhcCCc--------------eeEeeecccccccceEEEeecCCC-HHHHHHHHhhcCEEEeccCccc-
Confidence            333444555555555442              22222 122345789999995543 5777777777788877766532 


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 016612          335 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  377 (386)
Q Consensus       335 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  377 (386)
                        .|.           ....+. .+.||+|++..++++.|+.|
T Consensus       343 --~~~-----------~~~~~~-~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  343 --GPS-----------LDILGM-GGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             --HHH-----------HHHHHT-TTEEEEE-GTTSSHHHHHHH
T ss_pred             --HHH-----------HHHhCC-CCEEEEeccCCCCHHHHhhC
Confidence              110           000111 37799999998888888765

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.93  E-value=1.4e-23  Score=194.90  Aligned_cols=292  Identities=21%  Similarity=0.224  Sum_probs=194.2

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcC----CCceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|... |.. +++++.+.+....+    .++.+++++|++++.. +..+.++||+|+++++.|+++.    ..++..|
T Consensus        29 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~----~~~~~~~  104 (350)
T cd00609          29 LLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYE----AAARLAG  104 (350)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHCC
Confidence            3445544 544 67777777777655    3356677777788875 4556788999999999999886    4455677


Q ss_pred             cEEEEeCCC-----CH--HHHHhhhCCCceEEEEeCCCCCCcccccHH---HHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          119 VVVKRVNTC-----DL--DEVASAIGPWTKLVWVESPTNPRQQICDIR---KIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       119 ~~~~~v~~~-----d~--~~l~~~~~~~~~~v~~~~~~nptG~~~~l~---~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+++.++..     +.  +.++...++++++|++++++||+|.+.|.+   +|.++|+++|+++|+|++++.+...    
T Consensus       105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~  184 (350)
T cd00609         105 AEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPP  184 (350)
T ss_pred             CEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccc
Confidence            888888764     22  566666678999999999999999999755   5558999999999999998754321    


Q ss_pred             ----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHHH
Q 016612          185 ----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEK  256 (386)
Q Consensus       185 ----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  256 (386)
                          .....+.|++++|++|+++ .+|++.|+++++++.+.+.+...........+.....++...+..    +....+.
T Consensus       185 ~~~~~~~~~~~~~~~~s~~K~~~-~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  263 (350)
T cd00609         185 PALALLDAYERVIVLRSFSKTFG-LPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRER  263 (350)
T ss_pred             ccccCcCccCcEEEEeecccccC-CcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence                1234467999999999995 446789999998656766666555443344455555444443333    2333445


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLIS  336 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~  336 (386)
                      ..++.+.+.+.+++....   .   .           .....+.++++.+++......+.+.+...|+.+..+..+..  
T Consensus       264 ~~~~~~~l~~~L~~~~~~---~---~-----------~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~--  324 (350)
T cd00609         264 YRRRRDALLEALKELGPL---V---V-----------VKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGE--  324 (350)
T ss_pred             HHHHHHHHHHHHHhcCCc---c---c-----------cCCCccEEEEEecCCCChHHHHHHHHHhCCEEEeccccccc--
Confidence            556666666666655311   0   0           01234567777776543455666777777887665543110  


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          337 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       337 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                                         ....++|++++..  .+.++.+.++|+
T Consensus       325 -------------------~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         325 -------------------GGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             -------------------CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence                               1356799999876  555555555554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.93  E-value=8e-24  Score=201.46  Aligned_cols=168  Identities=17%  Similarity=0.249  Sum_probs=123.7

Q ss_pred             cccCC-CCc-hHHHHHHHHH-hhc-C---C--C-ceEEeCcHHHHHH-HHHH-----hcCCCCEEEecCCCCCcHHHHHh
Q 016612           48 DYTRS-GNP-TRDALESLLA-KLD-K---A--D-RALCFTSGMAALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLLS  111 (386)
Q Consensus        48 ~y~~~-g~~-~~~~l~~~l~-~~~-g---~--~-~~i~~~~gt~al~-~~~~-----~~~~g~~Vlv~~~~~~~~~~~~~  111 (386)
                      .|+.. |.+ +++++.+.+. +.. +   .  + +++++.++++++. ++.+     +++|||+|++++|.|+.+.....
T Consensus       129 ~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~  208 (527)
T PRK09275        129 NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE  208 (527)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH
Confidence            48887 876 7888887543 322 2   1  2 3445555568886 4443     68999999999999999864321


Q ss_pred             hhcccCCcEEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHH--cCCEEEEeCCCC
Q 016612          112 RVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA--HGALLLVDNSIM  179 (386)
Q Consensus       112 ~~~~~~g~~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~--~~~~li~D~a~~  179 (386)
                        ....+.+++.++.       .|.+++++++++++++|++++|+||||.+++   +++|+++|++  ++++||+||+|.
T Consensus       209 --l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~  286 (527)
T PRK09275        209 --LPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG  286 (527)
T ss_pred             --HcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCCh
Confidence              2234666676653       2678999998899999999999999999987   7888899965  499999999986


Q ss_pred             CCCc--cCCC--CCCccEEEeccccccccCCCceEEEEEEcCh
Q 016612          180 SPVL--SRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       180 ~~~~--~~~~--~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      .-..  .+..  ..+..+++.|+||.+ +.+|+|+||++++++
T Consensus       287 ~f~~~~~s~~~~~~~~~I~v~SfSK~f-~mtG~RlG~i~~~~~  328 (527)
T PRK09275        287 TFVDDFRSLFAVLPYNTILVYSFSKYF-GATGWRLGVIALHED  328 (527)
T ss_pred             hhcccccCHHHhCCCCEEEEeehhhhc-cCcHhHHhhhhcCch
Confidence            4221  1111  124689999999999 567899999999875

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.93  E-value=6.5e-25  Score=197.01  Aligned_cols=200  Identities=21%  Similarity=0.195  Sum_probs=152.7

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCcc-ccCCCCchHHHHHHHHHhhcCCC-ceEEeCcH-HHHHHHHHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYD-YTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALAAVTH   88 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g-t~al~~~~~   88 (386)
                      +++.+.  +..+|+.++.++.+-.-.......+.... |++...+..++.|+.++++.|++ ..|++++| |+++++++.
T Consensus        43 ~~vyld--~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~  120 (428)
T KOG1549|consen   43 RPVYLD--NQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLK  120 (428)
T ss_pred             ccEEEe--cCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHH
Confidence            444444  55577777776654221111111111112 33222234788999999999998 33555555 699986554


Q ss_pred             -h-cCCCC----EEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           89 -L-LGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        89 -~-~~~g~----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                       . +.++|    +|++.+..|++....+ ...+..|++++++|..     |.+++++.++++|+++.+++.+|.+|.+.|
T Consensus       121 ~v~~~~~~~~~k~iitl~~eH~~v~~s~-~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~P  199 (428)
T KOG1549|consen  121 GVARFFGDKTKKHIITLQTEHPCVLDSC-RALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQP  199 (428)
T ss_pred             HhhccccccccceEEEecccCcchhHHH-HHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccccc
Confidence             2 44566    9999999999988776 4566788999999864     899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccccCCCceEEEEEEcC
Q 016612          158 IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~  217 (386)
                      +++|.++|+++++.+++|.+|+.|... +..++++|+++.|.|||+ ||+|  +|++++++
T Consensus       200 v~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~y-gp~~--iGaLYvr~  257 (428)
T KOG1549|consen  200 VKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIY-GPPG--IGALYVRR  257 (428)
T ss_pred             HHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeeccccc-CCCc--ceEEEEcc
Confidence            999999999999999999999999875 667789999999999999 6666  79999985

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.1e-24  Score=200.29  Aligned_cols=268  Identities=13%  Similarity=0.170  Sum_probs=171.2

Q ss_pred             ccCCCCc-hHHHHHHHHHhhcCCCceEEeCcHH-HHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC
Q 016612           49 YTRSGNP-TRDALESLLAKLDKADRALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (386)
Q Consensus        49 y~~~g~~-~~~~l~~~l~~~~g~~~~i~~~~gt-~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
                      |...+.+ +++++.+++.+..-.++.|++++|+ +++.+++..+   |.|++++|+|+.+.    .+++..|.+++.++.
T Consensus        53 Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~---d~v~v~~P~y~~~~----~~~~~~g~~~~~v~~  125 (335)
T PRK14808         53 YYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---DRSVFFPPTYSCYR----IFAKAVGAKFLEVPL  125 (335)
T ss_pred             CCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh---CcEEECCCCHHHHH----HHHHHcCCeEEEecC
Confidence            4444443 4444444444321113566666665 8998666655   67999999999885    666788999999987


Q ss_pred             CC---HHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC---ccCC-CCCCccEEEeccc
Q 016612          127 CD---LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV---LSRP-LELGADIVMHSAT  199 (386)
Q Consensus       127 ~d---~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~---~~~~-~~~~~di~~~S~s  199 (386)
                      ++   .+..  .+ .+++++++++||||||.+.+.+++.+++ +++++||+||+|..-.   .... ......+++.|+|
T Consensus       126 ~~~~~~~~~--~~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~S  201 (335)
T PRK14808        126 TKDLRIPEV--NV-GEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFS  201 (335)
T ss_pred             CCcCCCChh--Hc-cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEech
Confidence            52   1111  12 3578999999999999999999999998 5799999999986321   1111 1234679999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcce
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKK  276 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~  276 (386)
                      |.+ +.+|+|+||+++++ ++.+.+......  .+.+...+.++...++..   ....+...++.+.+.+.+++.     
T Consensus       202 K~~-~l~GlRvG~~v~~~-~~~~~l~~~~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-----  272 (335)
T PRK14808        202 KAF-SLAAQRIGYVVSSE-KFIDAYNRVRLP--FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-----  272 (335)
T ss_pred             hhc-cCcccceEEEEeCH-HHHHHHHHhcCC--CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence            999 55689999999874 565555544422  344555555544444322   122223333333344444432     


Q ss_pred             EecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          277 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       277 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                                +..++    .+.|+++++.++..+ ...+.+.+..+|+.++.  +                         
T Consensus       273 ----------g~~~~----~~~g~f~~~~l~~~~-~~~~~~~l~~~Gi~V~~--~-------------------------  310 (335)
T PRK14808        273 ----------GYRIT----DSRGNFVFIFMEKEE-KERLLEHLRAKNIAVRS--F-------------------------  310 (335)
T ss_pred             ----------CCEEC----CCCCeEEEEeCCCcc-HHHHHHHHHHCCeEEEE--C-------------------------
Confidence                      11111    235788888886433 36677778888887652  1                         


Q ss_pred             CCCeEEEEecc-CChHHHHHHHHH
Q 016612          357 TEDLVRISVGI-EDVNDLISDLDK  379 (386)
Q Consensus       357 ~~~~iRis~~~-~~~~~~i~~l~~  379 (386)
                       ++++|||++. ++++++++.|++
T Consensus       311 -~~~~Risi~~~~~~~~~~~~l~~  333 (335)
T PRK14808        311 -REGVRITIGKREENDMILKELEV  333 (335)
T ss_pred             -CCCeEEecCCHHHHHHHHHHHHh
Confidence             2349999974 888888888764

>PRK08637 hypothetical protein; Provisional

Probab=99.92  E-value=1.2e-22  Score=191.00  Aligned_cols=296  Identities=15%  Similarity=0.156  Sum_probs=179.6

Q ss_pred             CCCCccccCC-CCc-hHHHHHHHHHhhcC---CC--ceEEeCcHH-HHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhh
Q 016612           43 ENGPYDYTRS-GNP-TRDALESLLAKLDK---AD--RALCFTSGM-AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRV  113 (386)
Q Consensus        43 ~~~~~~y~~~-g~~-~~~~l~~~l~~~~g---~~--~~i~~~~gt-~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~  113 (386)
                      ....+.|++. |.+ +|+++.+++.+..+   .+  +.|++++|+ +++..+ ..++++||.|++++|+|+.+...+   
T Consensus        34 ~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~---  110 (388)
T PRK08637         34 PDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTF---  110 (388)
T ss_pred             cccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHH---
Confidence            3456788887 876 78888887766432   12  345566665 888754 557899999999999999886321   


Q ss_pred             cccCCcEEEEeCC--C----CHHHHHhhhC----CCceEEEEeCCCCCCccccc---HHHHHHHHHH-----cCCEEEEe
Q 016612          114 TPKTGVVVKRVNT--C----DLDEVASAIG----PWTKLVWVESPTNPRQQICD---IRKIAEMAHA-----HGALLLVD  175 (386)
Q Consensus       114 ~~~~g~~~~~v~~--~----d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~---l~~i~~la~~-----~~~~li~D  175 (386)
                      ....|.+++.++.  +    |++++++.++    +.+.++++++||||||.+++   +++|+++|++     ++++||+|
T Consensus       111 ~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~D  190 (388)
T PRK08637        111 NTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVD  190 (388)
T ss_pred             HHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence            2347888888876  2    6888888775    45567778899999999986   6778887775     89999999


Q ss_pred             CCCCCCCcc-----C---C--CCCCcc--EEEeccccccccCCCceEEEEEEcC-----hhHHHHHHHh----hhhcCCC
Q 016612          176 NSIMSPVLS-----R---P--LELGAD--IVMHSATKFIAGHSDVMAGVLAVKG-----ERLAKELYFL----QNAEGSG  234 (386)
Q Consensus       176 ~a~~~~~~~-----~---~--~~~~~d--i~~~S~sK~~~g~~g~~~G~i~~~~-----~~~~~~~~~~----~~~~~~~  234 (386)
                      |+|..-.+.     +   .  ...+..  +.+.|+||.++ .+|+|+||++++.     +.+.+.+...    .......
T Consensus       191 e~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~-~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  269 (388)
T PRK08637        191 DAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEF-VWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISN  269 (388)
T ss_pred             ccchhcccCCccchhhHHHhhcccccceEEEeccccccCC-CcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCC
Confidence            998632211     0   0  011233  34459999984 5689999999753     4555444321    1112234


Q ss_pred             CChhhHHHHHhcCCcHH--HHH----HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC
Q 016612          235 LAPFDCWICLRGVKTMA--LRV----EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  308 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~  308 (386)
                      .+...+.++...+..-.  ...    ..+.+..+.+.+.+++..         +.  +++.++  . +..|.++++.+++
T Consensus       270 ~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~---------~~--~~~~~~--~-~~~g~~~~~~l~~  335 (388)
T PRK08637        270 GPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGK---------YD--DAWQAY--P-FNSGYFMCLKLKG  335 (388)
T ss_pred             CCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---------CC--CCcccc--c-ccceEEEEecCCh
Confidence            45555555555543311  111    112222222233333221         00  011111  1 1224556667763


Q ss_pred             HHhHHHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhcC
Q 016612          309 LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRTG  384 (386)
Q Consensus       309 ~~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~~  384 (386)
                      . ...++.+.+ +..|+.+..+                           .++++||+++.   +++++.+++|.++++++
T Consensus       336 ~-~~~~l~~~l~~~~gv~~~~~---------------------------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        336 V-DAEELRVHLLEKYGIGTIAL---------------------------NETDLRIAFSCVEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             H-HHHHHHHHHhhhcceEEEec---------------------------cCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence            2 356676666 3556643210                           24569999974   77888888888888753

>PLN02672 methionine S-methyltransferase

Probab=99.92  E-value=2.1e-23  Score=210.24  Aligned_cols=283  Identities=13%  Similarity=0.126  Sum_probs=185.3

Q ss_pred             CCc-hHHHHHHHHHhhcCCC----ceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           53 GNP-TRDALESLLAKLDKAD----RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~----~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      |.+ +++++.+++++.+|.+    +.|++++|+ +++. ++.++++|||.|+++.|+|+.+.    ..++..|.+++.++
T Consensus       731 g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~----~~a~~~Ga~vv~Vp  806 (1082)
T PLN02672        731 SETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYV----SAAKFLKANFRRIP  806 (1082)
T ss_pred             CChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEe
Confidence            444 6899999999988775    267788887 6676 55778999999999999999886    55667899999888


Q ss_pred             CC-------CHHHHHhhhCC-CceEEEEeCCC-CCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-CC-----C
Q 016612          126 TC-------DLDEVASAIGP-WTKLVWVESPT-NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RP-----L  187 (386)
Q Consensus       126 ~~-------d~~~l~~~~~~-~~~~v~~~~~~-nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-~~-----~  187 (386)
                      ++       |.+++++++++ +.+++++++|+ ||||.+++   +++|.++|++||++||+||+|+.-.+. ..     .
T Consensus       807 l~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl  886 (1082)
T PLN02672        807 TKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDL  886 (1082)
T ss_pred             cccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccch
Confidence            63       67889998875 45689999997 99999985   788899999999999999999622211 00     0


Q ss_pred             -------C----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCC-CChhhHHHHHhcC--------
Q 016612          188 -------E----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG-LAPFDCWICLRGV--------  247 (386)
Q Consensus       188 -------~----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------  247 (386)
                             .    ....++++|+||.+ +.+|+|+||++++++.+.+.+.......... .+......++..+        
T Consensus       887 ~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~  965 (1082)
T PLN02672        887 KSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLL  965 (1082)
T ss_pred             hhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHH
Confidence                   0    12568999999998 5678999999997666666665443222221 1122222222111        


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE-eCC-----------------H
Q 016612          248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGS-----------------L  309 (386)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~-----------------~  309 (386)
                      ..+....+.+.++.+.+.+.|++..         +      .+.    +..|+++.|. +..                 .
T Consensus       966 ~~l~e~r~~Lk~rRd~L~e~L~~~G---------i------~v~----~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~ 1026 (1082)
T PLN02672        966 DGVAEQKKILKSRAERLKETLEACG---------W------DVL----EPQGGISMVAKPSAYLGKTVKLKSIDGDTGIK 1026 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC---------C------eEe----cCCcEEEEEEEccccccccccccccccccccC
Confidence            0112223334555555666665431         1      111    2234444443 210                 1


Q ss_pred             HhHHHHHhhcCc-ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          310 ALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       310 ~~~~~l~~~l~~-~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                      .....+.+.+.. .|+.+.+|..+                      | .++++||+++.  +.+++.+++|++.++
T Consensus      1027 lds~efae~LLee~GVaV~PGs~F----------------------G-~~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1027 LDSSNIREAILKSTGLCINSSSWT----------------------G-IPGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             CCHHHHHHHHHHcCCEEEecCccc----------------------C-CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            124556665543 47877777541                      1 25789999984  567777777776554

>PLN02721 threonine aldolase

Probab=99.92  E-value=2.8e-23  Score=193.26  Aligned_cols=281  Identities=21%  Similarity=0.218  Sum_probs=183.9

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcC-CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~-~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      |...++++.+++++|.+..+++++|+++.. ++..++. +||+|++++|+|.+..... ..+...|.+++.++.+     
T Consensus        40 ~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~  118 (353)
T PLN02721         40 PTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNEDGTM  118 (353)
T ss_pred             HHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcCCCc
Confidence            457899999999999988889999997654 5555676 9999999999986553210 1456788999888753     


Q ss_pred             CHHHHHhhhC-------CCceEEEEeC-CCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc---c-CC--CCCC
Q 016612          128 DLDEVASAIG-------PWTKLVWVES-PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL---S-RP--LELG  190 (386)
Q Consensus       128 d~~~l~~~~~-------~~~~~v~~~~-~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~---~-~~--~~~~  190 (386)
                      |++++++.++       +++++|++++ ++||+|.+.|   +++|.++|+++|+++|+|+++..+..   . ++  ...+
T Consensus       119 d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~  198 (353)
T PLN02721        119 DLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKA  198 (353)
T ss_pred             CHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhh
Confidence            8899999987       5899999976 5778999876   78999999999999999999764321   1 11  1236


Q ss_pred             ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCCh--hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Q 016612          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP--FDCWICLRGVKTMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  268 (386)
                      .|.++.|+||+++++.   +++++.+ +++.+.+.......+.....  ..+.+...+++....+.++..++.+.+.+.|
T Consensus       199 ~d~~~~s~sK~l~~~~---G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L  274 (353)
T PLN02721        199 ADSVSVCLSKGLGAPV---GSVIVGS-KSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEGL  274 (353)
T ss_pred             CCEEEEecccccCCce---eeEEecC-HHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888999999996542   3445554 55655554444433222221  1122222333333334444445556666666


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhhcCcceeccCCCCccccccccccccCCCC
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  346 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~  346 (386)
                      ++.+.+              .+...  ...++++++.++..  ...+.+.+.+...|+.+.++.                
T Consensus       275 ~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~----------------  322 (353)
T PLN02721        275 NQIKGL--------------RVNVA--AVETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPGN----------------  322 (353)
T ss_pred             HhCCCc--------------EEecC--CccceEEEEEccCCccccHHHHHHHHHhCCcEEecCC----------------
Confidence            654321              00000  12356788877542  246678888888888766542                


Q ss_pred             CHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          347 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       347 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                                 ++++|++++.    ++++++++.|++++..
T Consensus       323 -----------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        323 -----------SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             -----------CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence                       3459999963    6666667766666543

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.92  E-value=9.9e-23  Score=179.22  Aligned_cols=297  Identities=15%  Similarity=0.186  Sum_probs=197.2

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC------CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA------DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~------~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      -.|.++ |.+ .++++.+.+.+..|.      ++.++++++|++..+ ...+.+|||..|+|.|.|++..   +.+.-+.
T Consensus       115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfd---rdl~~rT  191 (471)
T KOG0256|consen  115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFD---RDLRWRT  191 (471)
T ss_pred             hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCccc---ccceecc
Confidence            357777 887 799999999887543      356666667788764 4557899999999999999986   3566789


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhC------CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          118 GVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      |++++.+.+.       +.+.+|+++.      .+++.|++++|+||.|..++   +..+.++|.++++.+|+||+|+..
T Consensus       192 gveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~s  271 (471)
T KOG0256|consen  192 GVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGS  271 (471)
T ss_pred             CceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccc
Confidence            9999998864       5778887764      48899999999999999986   667888889999999999999865


Q ss_pred             CccCCC-------------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC
Q 016612          182 VLSRPL-------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (386)
Q Consensus       182 ~~~~~~-------------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (386)
                      ++....             ..+..-++.|+||-+ |.+|+|.|+++..++.+....+.....  ..++...++.+...+.
T Consensus       272 VF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne~VvsaA~kmssf--~~vSs~tQ~~la~LLS  348 (471)
T KOG0256|consen  272 VFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNEDVVSAATKMSSF--GLVSSQTQYLLASLLS  348 (471)
T ss_pred             ccCccCceEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecChHHHHHHHHHhhc--cCCcHHHHHHHHHHhc
Confidence            543210             224457888999999 678999999999988887655554443  3456666766665555


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE-e----CC--HHhHHHHHhhcCc
Q 016612          249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-T----GS--LALSKHVVETTKY  321 (386)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~----~~--~~~~~~l~~~l~~  321 (386)
                      .-......+.++.++++..-+.       +..+|+.+ |+..    .+..+++++|. +    ..  -+....+.+.+-.
T Consensus       349 D~~f~~~yl~en~~Rl~~rh~~-------~~~gLk~l-gI~c----l~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~  416 (471)
T KOG0256|consen  349 DEEFTREYLRENNKRLRIRHRY-------IVEGLKAL-GIPC----LKSNAGLFCWVDLRKLLTSLTFEGELELWERILD  416 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-------HHhhHHhc-CCce----eecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHH
Confidence            4333333444555544433222       11222211 1111    13345666654 2    11  1111223333322


Q ss_pred             -ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHH-HHHHHHHHHh
Q 016612          322 -FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVND-LISDLDKALR  382 (386)
Q Consensus       322 -~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~-~i~~l~~~l~  382 (386)
                       .++.+++|..+-                     ...+||+|++|.-  +++.+ .++++++.+.
T Consensus       417 ~vklnlSpG~s~~---------------------C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  417 NVKLNLSPGSSCH---------------------CHEPGWFRVCFANMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             hhccccCCCCcce---------------------ecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence             266778887521                     1247999999963  44444 6777777664

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.92  E-value=4.3e-23  Score=196.22  Aligned_cols=169  Identities=19%  Similarity=0.257  Sum_probs=121.6

Q ss_pred             cccC-CCC-chHHHHH-HHHHhhcC----CC---ceEEeCcHHHHHH-HHHH-----hcCCCCEEEecCCCCCcHHHHHh
Q 016612           48 DYTR-SGN-PTRDALE-SLLAKLDK----AD---RALCFTSGMAALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLLS  111 (386)
Q Consensus        48 ~y~~-~g~-~~~~~l~-~~l~~~~g----~~---~~i~~~~gt~al~-~~~~-----~~~~g~~Vlv~~~~~~~~~~~~~  111 (386)
                      .|.. .|. ++++++. +.+.+.++    .+   +.+++.++++|+. ++.+     +++|||+|+++.|.|+.+.....
T Consensus       123 ~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~  202 (521)
T TIGR03801       123 NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE  202 (521)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH
Confidence            4654 354 4666665 55555432    12   3444555568886 4443     68999999999999999864321


Q ss_pred             hhcccCCcEEEEeCCC------------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHc--CCEEEE
Q 016612          112 RVTPKTGVVVKRVNTC------------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAH--GALLLV  174 (386)
Q Consensus       112 ~~~~~~g~~~~~v~~~------------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~--~~~li~  174 (386)
                        ....|.+++.++.+            |.++++++++++++++++++|+||||.+++   +++|+++|+++  +++||+
T Consensus       203 --l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~  280 (521)
T TIGR03801       203 --LPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILT  280 (521)
T ss_pred             --HhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence              23457777766542            567899888889999999999999999987   77888899986  999999


Q ss_pred             eCCCCCCCc--cCCCC--CCccEEEeccccccccCCCceEEEEEEcChh
Q 016612          175 DNSIMSPVL--SRPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       175 D~a~~~~~~--~~~~~--~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      ||+|+.-..  .+...  .+..+++.|+||.+ |.+|+|+||++++++.
T Consensus       281 DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~f-g~~G~RlG~i~~~~~~  328 (521)
T TIGR03801       281 DDVYGTFVDDFRSLFAELPYNTIGVYSFSKYF-GATGWRLGTIALHKDN  328 (521)
T ss_pred             CCCchhhcccccchhhhCCCCEEEEEcchhhc-cCchhhhhhhhcCchH
Confidence            999873221  11111  24679999999999 5678999999998653

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.92  E-value=1.7e-23  Score=195.33  Aligned_cols=282  Identities=19%  Similarity=0.194  Sum_probs=183.5

Q ss_pred             hHHHHHHHHHhhcCCCc----eEEeCcHHHHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           56 TRDALESLLAKLDKADR----ALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~----~i~~~~gt~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      ..+++++.+++++|.++    .+++++||++++++ .+++.+||.+++..+.+++..  +..+++..|.+++.++.+   
T Consensus        36 ~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~~  113 (363)
T TIGR02326        36 VVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEVE  113 (363)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCC
Confidence            67889999999999862    44556778999754 567788888776555544331  235567788888887763   


Q ss_pred             --CHHHHHhhhCC--CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 --DLDEVASAIGP--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 --d~~~l~~~~~~--~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                        |++++++.++.  +++++.+.+++||||...|+++|.++|+++|+++++|++++.+..+ +...++.|++++|+||++
T Consensus       114 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l  193 (363)
T TIGR02326       114 PPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCI  193 (363)
T ss_pred             CCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCcccc
Confidence              78999998873  5678889999999999999999999999999999999999877654 344568999999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHH---------------hhhhcC-C--CCChhhHHHHHhcCCc------HHHHHHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYF---------------LQNAEG-S--GLAPFDCWICLRGVKT------MALRVEKQQ  258 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~---------------~~~~~~-~--~~~~~~~~~~~~~~~~------~~~~~~~~~  258 (386)
                      +||+|  .|+++++++.+.+ +..               .....+ .  ..+......+..+++.      +..+.++..
T Consensus       194 ~~p~G--~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~  270 (363)
T TIGR02326       194 QGVPG--FGFVIARQAELAA-CKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQ  270 (363)
T ss_pred             ccCCc--ceEEEECHHHHHH-hhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            88887  6999998654432 211               000000 0  1122222222222222      223344455


Q ss_pred             HHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCCH--HhHHHHHhhcCcceeccCCCCccccc
Q 016612          259 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLI  335 (386)
Q Consensus       259 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~~~~~  335 (386)
                      +....+.+.+++..         +.      ++.. +..+++ +.++.+++.  .....+.+.+..+|+.+++|...   
T Consensus       271 ~~~~~l~~~L~~~g---------~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~---  331 (363)
T TIGR02326       271 QNQKTLVAGMRALG---------FE------PLLD-DEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVS---  331 (363)
T ss_pred             HHHHHHHHHHHHcC---------Ce------eccC-cccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCC---
Confidence            55555555555432         11      1100 011233 356666542  23556777777778887766431   


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEe-c---cCChHHHHHHHHHHHh
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISV-G---IEDVNDLISDLDKALR  382 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~---~~~~~~~i~~l~~~l~  382 (386)
                                           .+++||||+ +   .++++.+++.|+++|.
T Consensus       332 ---------------------~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       332 ---------------------QVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             ---------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence                                 235699996 3   3777777777776653

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.92  E-value=5.3e-23  Score=191.31  Aligned_cols=300  Identities=20%  Similarity=0.213  Sum_probs=197.2

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .+...++++.+++++|.++.+++++|++|+.. +..+ +++||+|+++.+.|.++...    +...|.+++.++.+    
T Consensus        17 ~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~   92 (352)
T cd00616          17 GPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANA----ILLLGATPVFVDIDPDTY   92 (352)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH----HHHcCCeEEEEecCCCcC
Confidence            36788999999999999889999999999874 4445 58999999999999888643    44678888887643    


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC--CCCccEEEeccc--cc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSAT--KF  201 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~--~~~~di~~~S~s--K~  201 (386)
                        |++++++.+++++++|++++   ++|...|+++|.++|+++|+++|+|++++.+......  ....|+.++|++  |+
T Consensus        93 ~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~  169 (352)
T cd00616          93 NIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKN  169 (352)
T ss_pred             CcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCC
Confidence              78999999988999999764   6899999999999999999999999999877653221  223588888876  99


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhc---------------CCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAE---------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  266 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  266 (386)
                      ++++   .+|+++++++++.+.++......               ...++...+++....+..+....++..++.+.+.+
T Consensus       170 ~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~  246 (352)
T cd00616         170 LTTG---EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKE  246 (352)
T ss_pred             Cccc---CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9543   36888887766666555443221               12234444444444444444445555566666666


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhcc--CCCCceEEEEeCC--HHhHHHHHhhcCcceeccCCCCccccccccccc-
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQA--KGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFM-  341 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~--~~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~-  341 (386)
                      .|.+.+              ++.++...+  ....+++.+.+++  ......+.+.|...|+.++.... .....+... 
T Consensus       247 ~L~~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~-~~~~~~~~~~  311 (352)
T cd00616         247 LLADLP--------------GIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYP-PLHHQPPYKK  311 (352)
T ss_pred             HhcCCC--------------CccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecC-ccccCHhhhh
Confidence            665443              222221111  1234677777763  34566777777777774432111 000000000 


Q ss_pred             ----cCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          342 ----SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       342 ----~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                          .....+...    .+..+.+|++++...+++.++.+.++|+
T Consensus       312 ~~~~~~~~~~~a~----~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         312 LLGYPPGDLPNAE----DLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             ccCCCcCCChHHH----HHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence                000111110    1123679999999888888888888774

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.92  E-value=1.1e-22  Score=189.24  Aligned_cols=257  Identities=16%  Similarity=0.141  Sum_probs=179.5

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      +.++++++++++++|.+..++++||++|+.+ +.++ ++|||+|++++++|.++..    .+...|++++.++.+     
T Consensus        31 ~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~----~~~~~G~~~v~vd~d~~~~~  106 (376)
T TIGR02379        31 PFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTAN----AFVLRGAKIVFVDIRPDTMN  106 (376)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHH----HHHHcCCEEEEEecCCCcCC
Confidence            5899999999999999999999999999974 4555 7899999999999988863    334678999998854     


Q ss_pred             -CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCC--ccEEEecccc--cc
Q 016612          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSATK--FI  202 (386)
Q Consensus       128 -d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~--~di~~~S~sK--~~  202 (386)
                       |++++++++++++++|+   |+|++|...++++|.++|+++|++||+|++++.+...+....+  .|+.++|+++  .+
T Consensus       107 ~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l  183 (376)
T TIGR02379       107 IDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNY  183 (376)
T ss_pred             CCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcC
Confidence             78899999999999997   6678999999999999999999999999999877533222233  3778888655  44


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhcC---------------------CCCChhhHHHHHhcCCcHHHHHHHHHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEG---------------------SGLAPFDCWICLRGVKTMALRVEKQQDNA  261 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (386)
                      .  +|.++|+++++++++.+.++.+...+.                     ..++..+++.....++.+....++..+++
T Consensus       184 ~--~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~  261 (376)
T TIGR02379       184 T--SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLATW  261 (376)
T ss_pred             c--ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3  233589999988888777766554221                     12334555555566666666666666666


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCC
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFG  329 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G  329 (386)
                      +...+.|...........+..+  ++.       .....++++.++.....+++.+.|+..||..+.+
T Consensus       262 ~~y~~~L~~~~~~~~~~~~~~~--~~~-------~~~~~~~~i~~~~~~~r~~l~~~L~~~gI~~~~~  320 (376)
T TIGR02379       262 QLYQDALKPLEEKGIIELPSIP--NGC-------QHNAHMFYIKLKDEDDRNELIKYLKEQEIMAVFH  320 (376)
T ss_pred             HHHHHHhccCCcCCeeeCCCCC--CCC-------eeeeEEEEEEECCcCCHHHHHHHHHHCCCCcccc
Confidence            6666666543210001111111  000       0111345566654334678888888889886643

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PLN02822 serine palmitoyltransferase

Probab=99.92  E-value=5.3e-23  Score=196.79  Aligned_cols=325  Identities=14%  Similarity=0.160  Sum_probs=204.9

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccC----CCC-chHHHHHHHHHhhcCCCceEEeCcHHHHHH-
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR----SGN-PTRDALESLLAKLDKADRALCFTSGMAALA-   84 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~----~g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-   84 (386)
                      ...++++ ++++.|...+|........  .+. ..+.+|+.    +|. +...++++.++++++.++.+++++|..++. 
T Consensus       109 ~~~id~~-s~~~lgl~~~~~i~ea~~~--al~-~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~s  184 (481)
T PLN02822        109 KDVVNFA-SANYLGLIGNEKIKESCTS--ALE-KYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIFS  184 (481)
T ss_pred             ceEEEeE-CCCcCCCCCCHHHHHHHHH--HHH-HhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHH
Confidence            3567888 6777777666644321111  111 21223332    133 468999999999999888888888876654 


Q ss_pred             HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC---------CCc-eEEEEeCCCCCCcc
Q 016612           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---------PWT-KLVWVESPTNPRQQ  154 (386)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~---------~~~-~~v~~~~~~nptG~  154 (386)
                      ++.+++++||.|++....|.++.    ..+...+.+++.++.+|.++++..+.         +++ ++|+++++++++|.
T Consensus       185 ai~a~~~~gd~Ii~d~~~H~s~~----~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~  260 (481)
T PLN02822        185 VIPAFCKKGDIIVADEGVHWGIQ----NGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQ  260 (481)
T ss_pred             HHHHhCCCCCEEEEeCCccHHHH----HHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCC
Confidence            66778999999998888776664    23345577889998888877766553         234 79999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCCCCCCccCC-------C---CCCccEEEeccccccccCCCceEEEEEEcChhHHHHH
Q 016612          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-------L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (386)
Q Consensus       155 ~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-------~---~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~  224 (386)
                      +.|+++|.++|++||+++|+||+|+.+.+...       .   ....|++++|++|.++ ..   +|+++++ +++.+.+
T Consensus       261 i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~---GG~i~g~-~~ii~~~  335 (481)
T PLN02822        261 IAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TE---GGFCTGS-ARVVDHQ  335 (481)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hC---CeEEEcC-HHHHHHH
Confidence            99999999999999999999999986654311       1   1257899999999995 34   4898886 4455544


Q ss_pred             HHhhh--hcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC
Q 016612          225 YFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  299 (386)
Q Consensus       225 ~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~  299 (386)
                      +....  ..+..+++..+.++..+++.+   ....+++.++.+.+.+.+++..              +..+.   ....+
T Consensus       336 ~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~--------------g~~~~---~~~~s  398 (481)
T PLN02822        336 RLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIP--------------GLSIG---SNTLS  398 (481)
T ss_pred             HhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC--------------CcccC---CCCCC
Confidence            43222  222333444444444444322   2334445555555555555432              11111   12246


Q ss_pred             ceEEEEeCCH--------HhHHHHHhhcC-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---
Q 016612          300 SVLSFLTGSL--------ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---  367 (386)
Q Consensus       300 ~~~~~~~~~~--------~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---  367 (386)
                      +++.+.+++.        .....+.+.+. ..|+.+.++..      |....            +..+..+|++++.   
T Consensus       399 pi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~------~~~~~------------~~~~~~lRi~is~~~t  460 (481)
T PLN02822        399 PIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKR------STLDK------------CRLPVGIRLFVSAGHT  460 (481)
T ss_pred             CEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCC------CCcCC------------CCCCCcEEEEECCCCC
Confidence            7777777431        22456777764 66887665432      10000            0013469999874   


Q ss_pred             -CChHHHHHHHHHHHhc
Q 016612          368 -EDVNDLISDLDKALRT  383 (386)
Q Consensus       368 -~~~~~~i~~l~~~l~~  383 (386)
                       ++++++++.|++++++
T Consensus       461 ~edI~~~~~~l~~~~~~  477 (481)
T PLN02822        461 ESDILKASESLKRVAAS  477 (481)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             6666666777666654

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.92  E-value=7.9e-23  Score=189.60  Aligned_cols=166  Identities=20%  Similarity=0.269  Sum_probs=132.7

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCC---------------EEEecCCCCCcHHHHHhhhcccCC
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE---------------EIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~---------------~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ++++++++.+++++|.++.++++++|+|++ ++.+++++||               +|+++.|.|..+...+...+...|
T Consensus        45 ~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g  124 (363)
T TIGR01437        45 ELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGG  124 (363)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcC
Confidence            479999999999999998888899999987 6677889998               899988766544222235566788


Q ss_pred             cEEEEeCC---CCHHHHHhhhCCCceEEE-EeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEE
Q 016612          119 VVVKRVNT---CDLDEVASAIGPWTKLVW-VESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV  194 (386)
Q Consensus       119 ~~~~~v~~---~d~~~l~~~~~~~~~~v~-~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~  194 (386)
                      +++++++.   .|+++++++++++|++++ +++++||+|.+.|+++|.++|+++|+++++|++|+... ......+.|++
T Consensus       125 ~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~D~~  203 (363)
T TIGR01437       125 GKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGADLV  203 (363)
T ss_pred             CeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCCCEE
Confidence            88888875   389999999999999766 57889999999999999999999999999999997322 12234578999


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHH
Q 016612          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (386)
Q Consensus       195 ~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~  225 (386)
                      ++|+||++.||   ++|+++++++ +.+...
T Consensus       204 ~~S~~K~l~gp---~~G~l~~~~~-~i~~~~  230 (363)
T TIGR01437       204 IYSGAKAIEGP---TSGLVLGKKK-YIEWVK  230 (363)
T ss_pred             EEeCCcccCCC---ceEEEEEcHH-HHHHHH
Confidence            99999998766   4799887644 444333

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.92  E-value=6e-23  Score=194.05  Aligned_cols=160  Identities=21%  Similarity=0.220  Sum_probs=131.5

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHh----cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~----~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..+++++.+++++|.+  +.+++++||++++. +.++    +++||+|++++++|+++...+.. ++..|++++.++.+ 
T Consensus        50 ~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~-~~~~g~~~~~v~~~~  128 (404)
T PRK14012         50 AVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLDPQS  128 (404)
T ss_pred             HHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHH-HHhCCCEEEEEccCC
Confidence            5778899999999986  36666677788864 3333    47899999999999888766543 34568898888753 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                          |+++++++++++++++++++++||||.+.|+++|.++|+++|+++|+|++++.|... +....++|++++|++|.+
T Consensus       129 ~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~  208 (404)
T PRK14012        129 NGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIY  208 (404)
T ss_pred             CCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhcc
Confidence                899999999999999999999999999999999999999999999999999988764 444568999999999976


Q ss_pred             ccCCCceEEEEEEcChh
Q 016612          203 AGHSDVMAGVLAVKGER  219 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~  219 (386)
                       ||.|  .|+++++++.
T Consensus       209 -gp~g--~G~l~~~~~~  222 (404)
T PRK14012        209 -GPKG--IGALYVRRKP  222 (404)
T ss_pred             -CCCc--eEEEEEecCC
Confidence             6665  6887777553

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.92  E-value=4.7e-23  Score=191.55  Aligned_cols=159  Identities=25%  Similarity=0.272  Sum_probs=129.6

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEeCcH-HHHHHHH-HHhc----CCC-CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKAD-RALCFTSG-MAALAAV-THLL----GTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~g-t~al~~~-~~~~----~~g-~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      ..+++++.+++++|.+ +.+++++| +++++.+ ..+.    ++| +.|++....|+++...+.. ++..|++++.++.+
T Consensus        43 ~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~-~~~~G~~v~~v~~~  121 (353)
T TIGR03235        43 AVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRA-LERNGFTVTYLPVD  121 (353)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHH-HHhcCCEEEEEccC
Confidence            4678999999999986 45555555 6888644 4443    356 7899998899888766643 35679999988753


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |++++++.+++++++|++++++||||.+.|+++|.++|+++|+++++|++++.|... +....++|++++|++|+
T Consensus       122 ~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~  201 (353)
T TIGR03235       122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKI  201 (353)
T ss_pred             CCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhc
Confidence                 889999999889999999999999999999999999999999999999999988764 33446899999999999


Q ss_pred             cccCCCceEEEEEEcCh
Q 016612          202 IAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~  218 (386)
                      + ||+|  +|+++++++
T Consensus       202 ~-gp~g--~g~l~~~~~  215 (353)
T TIGR03235       202 Y-GPKG--IGALVIRKR  215 (353)
T ss_pred             C-CCCc--eEEEEEccC
Confidence            6 7777  799988865

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.92  E-value=8.7e-23  Score=190.91  Aligned_cols=286  Identities=17%  Similarity=0.168  Sum_probs=188.3

Q ss_pred             hHHHHHHHHHhhcCCC---c-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           56 TRDALESLLAKLDKAD---R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      ..+++++.+++++|.+   + .+++++|++++. ++.++..+||.|++..+.|.+..  +...++..|++++.++..   
T Consensus        38 ~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~  115 (368)
T PRK13479         38 LTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGEDE  115 (368)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCCC
Confidence            6888999999999875   2 345677789987 55667889999998887776542  235667789988888763   


Q ss_pred             --CHHHHHhhhC--CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 --DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 --d~~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                        |++++++.++  ++++++++++++||||...|+++|.++|+++|+++|+|++++.+... +....+.|++++|++|++
T Consensus       116 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l  195 (368)
T PRK13479        116 PPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCI  195 (368)
T ss_pred             CCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCcccc
Confidence              7899998886  35678999999999999999999999999999999999988776543 334557899999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhh---------------cCC--CCChhhHHHHHhcCCc------HHHHHHHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNA---------------EGS--GLAPFDCWICLRGVKT------MALRVEKQQD  259 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~  259 (386)
                      .|++|  .|+++++++ +.+.+......               ...  ..+....+.+..+++.      +..+.++..+
T Consensus       196 ~g~~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~  272 (368)
T PRK13479        196 EGVPG--FGFVIARRS-ELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYAN  272 (368)
T ss_pred             ccCCC--ceEEEECHH-HHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            88888  599999754 43333221100               000  1121111222222211      2333344455


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhhcCcceeccCCCCccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISM  337 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~~~~~~~  337 (386)
                      ..+.+.+.+++..         +.      ++.+.......++.|.++..  .....+.+.+...|+.++.|...     
T Consensus       273 ~~~~l~~~L~~~g---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~-----  332 (368)
T PRK13479        273 NQRTLVAGMRALG---------FE------PLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLT-----  332 (368)
T ss_pred             HHHHHHHHHHHcC---------Cc------ccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCC-----
Confidence            5555555555432         11      11000001123455554332  23567888888888887665321     


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEe-c---cCChHHHHHHHHHHHhcCC
Q 016612          338 PCFMSHASIPVEVRQARGLTEDLVRISV-G---IEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       338 p~~~~~~~~~~~~~~~~~~~~~~iRis~-~---~~~~~~~i~~l~~~l~~~~  385 (386)
                                         ..+++|+|. +   .++++.+++.|++++++.+
T Consensus       333 -------------------~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~  365 (368)
T PRK13479        333 -------------------QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG  365 (368)
T ss_pred             -------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence                               134599986 4   4888889999988887654

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.91  E-value=1.7e-22  Score=188.62  Aligned_cols=319  Identities=18%  Similarity=0.187  Sum_probs=191.8

Q ss_pred             cceeeccCCCCCCCCCcccceeeeeeee---cCCCC-CC-CCcccc-C-C-CC-chHHHHHHHHHhhcCCCceEEeCcHH
Q 016612           10 STLLMNFSNEFDPYGALSTPLYQTATFK---QPSAT-EN-GPYDYT-R-S-GN-PTRDALESLLAKLDKADRALCFTSGM   80 (386)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~-~~-~~~~y~-~-~-g~-~~~~~l~~~l~~~~g~~~~i~~~~gt   80 (386)
                      +...++++ +|||+|....|........   ..... +. +....+ + . |. +..+++|+.+++++|.++.+++++|+
T Consensus         3 ~~~~~~~~-s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~   81 (370)
T PRK05937          3 ESLSIDFV-TNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGY   81 (370)
T ss_pred             CCceEEeE-CCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChH
Confidence            34688999 9999998887755422111   10000 00 111111 2 1 33 47999999999999999889999999


Q ss_pred             HHHHHHHH-hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC------CCceEEEEeCCCCCCc
Q 016612           81 AALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQ  153 (386)
Q Consensus        81 ~al~~~~~-~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~------~~~~~v~~~~~~nptG  153 (386)
                      .++..+.. +.++||.|++....|.+....+.. .  .+.. +.++..|++++++.++      +++.+|++++++|++|
T Consensus        82 ~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-~--~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G  157 (370)
T PRK05937         82 MANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-I--SGWH-QSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKG  157 (370)
T ss_pred             HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-c--CCce-EEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCC
Confidence            77654444 457888888888889888766532 2  2333 3456678999998876      2456778899999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC-----CCC---ccEEEeccccccccCCCceEEEEEEcChhHHHHHH
Q 016612          154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL-----ELG---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (386)
Q Consensus       154 ~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~-----~~~---~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~  225 (386)
                      .+.|+++|.++|+++|+++++|++|+.|.+....     .++   .++++.|+||.+ |+.|  +|++ +. +++...+.
T Consensus       158 ~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G--~~vl-~~-~~~~~~~~  232 (370)
T PRK05937        158 TLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMG--AALL-SS-SEVKQDLM  232 (370)
T ss_pred             CccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCc--eEEE-cC-HHHHHHHH
Confidence            9999999999999999999999999977654221     122   246788999998 4555  3444 44 33333222


Q ss_pred             Hh--hhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEE
Q 016612          226 FL--QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  303 (386)
Q Consensus       226 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~  303 (386)
                      ..  ......+.++.....+..+++.+....+...+..+.+.+++.+.          +...           ..+....
T Consensus       233 ~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~----------l~~~-----------~~~~~~~  291 (370)
T PRK05937        233 LNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQK----------FSSA-----------APGCVQP  291 (370)
T ss_pred             HhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh----------cCCC-----------CCCCEEE
Confidence            11  11122334454444333433332211122233444444544432          1110           0112233


Q ss_pred             EEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHH
Q 016612          304 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDK  379 (386)
Q Consensus       304 ~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~  379 (386)
                      +.+++.. ...+.+.+..+|+.++.      +++|                  ..+.+|+|++.    ++++.+++.|.+
T Consensus       292 i~~~~~~-~~~~~~~L~~~gi~v~~------~~~~------------------~~~~iRis~~~~~t~edid~l~~~L~~  346 (370)
T PRK05937        292 IFLPGIS-EQELYSKLVETGIRVGV------VCFP------------------TGPFLRVNLHAFNTEDEVDILVSVLAT  346 (370)
T ss_pred             EEeCChh-HHHHHHHHHHCCeeEEe------eCCC------------------CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4444433 45677777777775432      1112                  13469999964    666666666666


Q ss_pred             HHhcC
Q 016612          380 ALRTG  384 (386)
Q Consensus       380 ~l~~~  384 (386)
                      .+++.
T Consensus       347 ~~~~~  351 (370)
T PRK05937        347 YLEKY  351 (370)
T ss_pred             HHHHh
Confidence            66554

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.91  E-value=4.1e-22  Score=188.45  Aligned_cols=164  Identities=26%  Similarity=0.284  Sum_probs=130.7

Q ss_pred             CCc-hHHHHHHHHHhhcCCC--ceEEeCcHH-HHHHHH-HHhcCC--CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           53 GNP-TRDALESLLAKLDKAD--RALCFTSGM-AALAAV-THLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~--~~i~~~~gt-~al~~~-~~~~~~--g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      |.+ +++++++++++++|.+  +.+++++|+ ++..++ ...+++  ||+|+++++.|+++...+....+..|.+++.++
T Consensus        61 g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~  140 (398)
T cd00613          61 GRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVP  140 (398)
T ss_pred             hHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEec
Confidence            665 7999999999999987  566666666 444444 335665  999999999999998777655566678888887


Q ss_pred             CC-----CHHHHHhhhCCCceEEEEeCCCCCCcccccH-HHHHHHHHHcCCEEEEeCCCCCCC-ccCCCCCCccEEEecc
Q 016612          126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI-RKIAEMAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSA  198 (386)
Q Consensus       126 ~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l-~~i~~la~~~~~~li~D~a~~~~~-~~~~~~~~~di~~~S~  198 (386)
                      ..     |++++++.+++++++|++++|+ ++|.+.|+ ++|.++|+++|+++|+|++++.+. ..++...++|++++|+
T Consensus       141 ~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~  219 (398)
T cd00613         141 SDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNL  219 (398)
T ss_pred             cCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeec
Confidence            63     6899999999999999999985 89999885 999999999999999999986544 2234456899999999


Q ss_pred             ccccccC---CCceEEEEEEcCh
Q 016612          199 TKFIAGH---SDVMAGVLAVKGE  218 (386)
Q Consensus       199 sK~~~g~---~g~~~G~i~~~~~  218 (386)
                      ||++ +|   +|.++|+++.+++
T Consensus       220 ~K~~-~p~g~Ggp~~g~l~~~~~  241 (398)
T cd00613         220 QKTG-VPHGGGGPGAGFFAVKKE  241 (398)
T ss_pred             cccC-CCCCCCCCceeEEEEhhh
Confidence            9998 44   2456899998754

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.91  E-value=1.4e-22  Score=190.50  Aligned_cols=213  Identities=23%  Similarity=0.327  Sum_probs=170.2

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhcCCCCEEEecCCCC---CcHHHHHhhhcccCCcEEEEeCC---CC
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY---GGTDRLLSRVTPKTGVVVKRVNT---CD  128 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~---~~~~~~~~~~~~~~g~~~~~v~~---~d  128 (386)
                      ...+.+++.+++++|.++.+++++|++|+.+++..+.+||+|++++..|   ++.... ....+..|+++++++.   .+
T Consensus       122 ~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~~  200 (454)
T TIGR00474       122 SRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRTH  200 (454)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCCC
Confidence            3468899999999999999999999999886667789999999998764   444333 3456778999999986   47


Q ss_pred             HHHHHhhhCCCceEEEEeCCCCCC--c--ccccHHHHHHHHHHcCCEEEEeCCCCC---------CC---ccCCCCCCcc
Q 016612          129 LDEVASAIGPWTKLVWVESPTNPR--Q--QICDIRKIAEMAHAHGALLLVDNSIMS---------PV---LSRPLELGAD  192 (386)
Q Consensus       129 ~~~l~~~~~~~~~~v~~~~~~npt--G--~~~~l~~i~~la~~~~~~li~D~a~~~---------~~---~~~~~~~~~d  192 (386)
                      +++++++++++|++|++++++|++  |  .+.|+++|+++|+++|+++++|.+.+.         +.   ..++.+.|+|
T Consensus       201 l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD  280 (454)
T TIGR00474       201 LKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD  280 (454)
T ss_pred             HHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCC
Confidence            899999999999999999999985  6  468999999999999999999986321         11   2245567999


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHH--------HHHH-------HhhhhcCCCCChhhHHHHHhcCCcHHHHHHHH
Q 016612          193 IVMHSATKFIAGHSDVMAGVLAVKGERLA--------KELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ  257 (386)
Q Consensus       193 i~~~S~sK~~~g~~g~~~G~i~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (386)
                      ++++|++|+++||.   +|+++++++.+.        +.++       .+....+..+.+..++....+++.+..+.++.
T Consensus       281 iv~fSg~K~LgGp~---~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~  357 (454)
T TIGR00474       281 LVTFSGDKLLGGPQ---AGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEEL  357 (454)
T ss_pred             EEEecCccccCCCe---EEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHH
Confidence            99999999998773   799999865441        2222       22334445667777788888889999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 016612          258 QDNAQKIAEFLASH  271 (386)
Q Consensus       258 ~~~~~~l~~~l~~~  271 (386)
                      .+++..+.++|++.
T Consensus       358 ~~~A~~la~~L~~~  371 (454)
T TIGR00474       358 RARAERLAKRLKAA  371 (454)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999874

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.91  E-value=8.1e-22  Score=184.86  Aligned_cols=300  Identities=19%  Similarity=0.213  Sum_probs=195.6

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHHH-HHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAAV-THL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~-~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      +...++++.+++++|.+..+++++|++|+..+ .++ +++||+|+++.++|.++.    ..++..|++++.++.+     
T Consensus        29 ~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~  104 (380)
T TIGR03588        29 PTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATA----NCALYCGAKVDFVDIDPDTGN  104 (380)
T ss_pred             hhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH----HHHHHcCCEEEEEecCCCcCC
Confidence            56788999999999999889999999999754 455 789999999999998875    4456789999988762     


Q ss_pred             -CHHHHHhhhC----CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCc----cEEEecc
Q 016612          128 -DLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA----DIVMHSA  198 (386)
Q Consensus       128 -d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~----di~~~S~  198 (386)
                       |++++++.++    +++++|++.   |++|...++++|.++|+++|++||+|++|+.|...+....+.    |+.++|+
T Consensus       105 ~d~~~l~~~i~~~~~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~  181 (380)
T TIGR03588       105 IDEDALEKKLAAAKGKLPKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSF  181 (380)
T ss_pred             cCHHHHHHHhhcccCCCceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEec
Confidence             7899999998    789998854   468999999999999999999999999999876443333444    9999998


Q ss_pred             c--cccccCCCceEEEEEEcChhHHHHHHHhhhhc-------------------------CCCCChhhHHHHHhcCCcHH
Q 016612          199 T--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-------------------------GSGLAPFDCWICLRGVKTMA  251 (386)
Q Consensus       199 s--K~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~  251 (386)
                      |  |++..+.   +|+++.+++.+.+.++......                         ...++..++......+..+.
T Consensus       182 ~~~K~~~~~~---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~  258 (380)
T TIGR03588       182 HPVKIITTAE---GGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLD  258 (380)
T ss_pred             CCCCcccccC---ceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHH
Confidence            7  8886543   6888888787776665443211                         11223344444444455556


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccC--CCCceEEEEeCC--HHhHHHHHhhcCcceeccC
Q 016612          252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLTGS--LALSKHVVETTKYFSITVS  327 (386)
Q Consensus       252 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~--~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~  327 (386)
                      ...++..++++.+.+.|...+.+              .++.....  ....++.+.++.  ....+++.+.|...||.++
T Consensus       259 ~~~~~r~~~~~~~~~~L~~~~~~--------------~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~  324 (380)
T TIGR03588       259 RFVAKRREIAARYDRLLKDLPYF--------------TPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQ  324 (380)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCc--------------cCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcc
Confidence            66666666777777666654321              11100000  001222333331  2346777787877888765


Q ss_pred             CCCcccccccccccc---CCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          328 FGSVKSLISMPCFMS---HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      .... .+...|+...   ...++....    +....+++.++..-.++.++.+.++|++
T Consensus       325 ~~~~-~~~~~~~~~~~~~~~~~p~a~~----~~~~~l~lP~~~~l~~~dv~~i~~~l~~  378 (380)
T TIGR03588       325 VHYI-PVHLQPYYRQGFGDGDLPSAEN----FYLAEISLPLHPALTLEQQQRVVETLRK  378 (380)
T ss_pred             cCCc-ccccChhhhccCCcCCCcHHHH----HHhceEEcCCCCCCCHHHHHHHHHHHHH
Confidence            4321 1122232211   111222211    1235688888765555556666665554

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.91  E-value=4e-22  Score=184.36  Aligned_cols=278  Identities=19%  Similarity=0.152  Sum_probs=182.7

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC----CC
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CD  128 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~d  128 (386)
                      .+..+++++.+++++|.++.+++++|++++. ++..++++||.|+++++.|.+..... ......|++++.++.    .|
T Consensus        31 ~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~d  109 (338)
T cd06502          31 DPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAG-APEFLSGVKLLPVPGENGKLT  109 (338)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCC-cHHHHcCceEEeecCCCCcCC
Confidence            3578999999999999668888889998886 45557899999999999997653211 123347888888876    38


Q ss_pred             HHHHHhhhCC-------CceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCC------CccCCCCCCcc
Q 016612          129 LDEVASAIGP-------WTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSP------VLSRPLELGAD  192 (386)
Q Consensus       129 ~~~l~~~~~~-------~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~------~~~~~~~~~~d  192 (386)
                      ++++++++++       ++++|++++|+|| |.+.   ++++|.++|+++|+++|+|++|..+      ........+.|
T Consensus       110 ~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d  188 (338)
T cd06502         110 PEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVD  188 (338)
T ss_pred             HHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCC
Confidence            8999998864       7899999999998 5443   5788999999999999999986422      11111224678


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhc--CCCCChhhHHHHHhcCCc--HHHHHHHHHHHHHHHHHHH
Q 016612          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--GSGLAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       193 i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l  268 (386)
                      +++.|+||+++.++   +++++.+ +++.+.+.......  ....++..+.+....++.  ...+.++..++.+.+.+.|
T Consensus       189 ~~~~s~sK~~~~~~---g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L  264 (338)
T cd06502         189 SVSFCLSKGGGAPV---GAVVVGN-RDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEAL  264 (338)
T ss_pred             EEEEeccccCCCcc---ceEEECC-HHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999996553   3445554 55655555443322  223344444555454443  3444556666667777777


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcC---cceeccCCCCccccccccccccCC
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTK---YFSITVSFGSVKSLISMPCFMSHA  344 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~---~~gi~~~~G~~~~~~~~p~~~~~~  344 (386)
                      ++.+         +.      ++    ...++++.+..+ ......++.+++.   ..|+.+...               
T Consensus       265 ~~~~---------~~------~~----~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~---------------  310 (338)
T cd06502         265 EELG---------GL------ES----EVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAW---------------  310 (338)
T ss_pred             HhcC---------CC------cc----cccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEec---------------
Confidence            6543         11      00    124567777664 3333445554432   335433211               


Q ss_pred             CCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          345 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       345 ~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                                  ..+++|++++....++.++.+.+++++
T Consensus       311 ------------~~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         311 ------------GEGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             ------------CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence                        125699999987777777777777654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.90  E-value=6.7e-22  Score=178.90  Aligned_cols=303  Identities=22%  Similarity=0.258  Sum_probs=211.7

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH--hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTH--LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~--~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .|...++|+.+++++|++.++.++|||.|+++.+.  -+.|||+|+++..+|.++.    ......|.+++++|.+    
T Consensus        33 G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATa----n~i~~~Ga~PVFvDid~~T~  108 (374)
T COG0399          33 GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATA----NAVLLVGAKPVFVDIDPDTL  108 (374)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHH----HHHHHcCCeEEEEecCCccc
Confidence            36788999999999999999999999999985544  3799999999999998885    4455889999999975    


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCC--ccEEEecc--ccc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSA--TKF  201 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~--~di~~~S~--sK~  201 (386)
                        |++.++++++++||+|+..|   -.|...++++|.++|++||++||+|.+++.|........|  .|+.++||  .|.
T Consensus       109 nid~~~ie~aIt~~tKAIipVh---l~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~  185 (374)
T COG0399         109 NIDPDLIEAAITPRTKAIIPVH---LAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKN  185 (374)
T ss_pred             CCCHHHHHHHcccCCeEEEEeh---hccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCC
Confidence              89999999999999999544   4688899999999999999999999999998866544444  47888885  577


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhcC----------------CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEG----------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIA  265 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  265 (386)
                      +...   -||.++++++++.++.+.+...+.                ..++..+++..+..++.+....++..++++...
T Consensus       186 ittg---EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~  262 (374)
T COG0399         186 LTTG---EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYA  262 (374)
T ss_pred             cccc---CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7532   479999999999887766544322                235567777777778777777777778887777


Q ss_pred             HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHHHHhhcCcceeccCCCCccccccccccccC-
Q 016612          266 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH-  343 (386)
Q Consensus       266 ~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~-  343 (386)
                      +.|++.+.   ...+.....  .       ...-.++.+.++.. ...+.+.+.|+..|+. .......+...|++... 
T Consensus       263 ~~l~~~~~---~~~p~~~~~--~-------~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~-~~~~~~P~~~~~~~~~~~  329 (374)
T COG0399         263 EALKGLPG---ITLPPEPDG--A-------VHAWHLYTILVDEEGISRDALMESLKEAGVG-AVVYFRPLHLQPAYRQLG  329 (374)
T ss_pred             HHhhcCCC---ccccCCCCC--c-------eeeeeeeEEEecCCCCCHHHHHHHHHhCCCC-ceEEeeccccchhhhccc
Confidence            77776542   111111100  0       01112334444432 4567888888888776 22233333333332211 


Q ss_pred             ----CCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          344 ----ASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       344 ----~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                          ..++....    .....+++-+.    .++++++++.+++++..
T Consensus       330 ~~~~~~lp~ae~----~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         330 YFPEGDLPNAED----LSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             ccccCCCchHHH----HhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence                22332211    12344666654    37777777777777653

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.90  E-value=7.2e-22  Score=183.93  Aligned_cols=161  Identities=22%  Similarity=0.272  Sum_probs=125.1

Q ss_pred             chHHHHHHHHHhhcCCCc----eEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           55 PTRDALESLLAKLDKADR----ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~----~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      +..+++++.+++++|.++    .+++++|++++.+ +..++++||++++..+.+.+..  +..+++..|.+++.++.+  
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~  108 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEY  108 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCC
Confidence            478899999999999862    3356788899875 4556788888776555443321  135566788888887753  


Q ss_pred             ---CHHHHHhhhC--CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 ---DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 ---d~~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                         |++++++.++  ++++++++++++|++|.+.|+++|.++|+++|+++|+|++++.+... +....+.|++++|++|+
T Consensus       109 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~  188 (355)
T TIGR03301       109 EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKC  188 (355)
T ss_pred             CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcc
Confidence               7899999886  35667888899999999999999999999999999999998876543 33345789999999999


Q ss_pred             cccCCCceEEEEEEcChh
Q 016612          202 IAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~  219 (386)
                      ++|++|  .|+++++++.
T Consensus       189 l~~~~G--~g~~~~~~~~  204 (355)
T TIGR03301       189 LEGVPG--FGFVIARRDL  204 (355)
T ss_pred             cccCCc--eeEEEECHHH
Confidence            878777  5999988553

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.90  E-value=5.2e-21  Score=178.74  Aligned_cols=253  Identities=20%  Similarity=0.240  Sum_probs=170.3

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .|...++++.+++++|.+..+.++|||+|+.+ +.++ +++||+|++++++|.++..    .+...|++++.++.+    
T Consensus        32 g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~----~~~~~G~~~v~vd~~~~~~  107 (379)
T PRK11658         32 GPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLN----MIVLLGATPVMVDVDRDTL  107 (379)
T ss_pred             CHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHH----HHHHcCCEEEEEecCCCcC
Confidence            36789999999999999989999999999974 4556 7899999999999988853    445689999988753    


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC---CCCCCccEEEecccccc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFI  202 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~---~~~~~~di~~~S~sK~~  202 (386)
                        |++++++++++++++|+   |.|++|...|+++|.++|+++|+++|+|++++.+....   ....+.+++.++.+|.+
T Consensus       108 ~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l  184 (379)
T PRK11658        108 MVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNI  184 (379)
T ss_pred             CcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcC
Confidence              78999999999999988   56679999999999999999999999999998776432   22345556666666877


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhc----------------------C--CCCChhhHHHHHhcCCcHHHHHHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAE----------------------G--SGLAPFDCWICLRGVKTMALRVEKQQ  258 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (386)
                      .++   ++|+++.+++++.+.++.....+                      |  ..++..++++.+..+..+....++..
T Consensus       185 ~~g---~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~  261 (379)
T PRK11658        185 TCA---EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRR  261 (379)
T ss_pred             ccc---CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            553   47988888777776665443211                      0  11333444444444444444444555


Q ss_pred             HHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC---HHhHHHHHhhcCcceeccCC
Q 016612          259 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKHVVETTKYFSITVSF  328 (386)
Q Consensus       259 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~gi~~~~  328 (386)
                      ++++.+.+.|.+.+.   .... .+....        .....++.+.++.   ....+++.+.|+..||.++.
T Consensus       262 ~~a~~~~~~L~~~~~---~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~  322 (379)
T PRK11658        262 EIAARYLQALADLPF---QPLS-LPAWPH--------QHAWHLFIIRVDEERCGISRDALMEALKERGIGTGL  322 (379)
T ss_pred             HHHHHHHHHhcCCCC---ccCc-CCCCCC--------ceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcc
Confidence            555555555544321   0000 000000        0011344555532   12466788888888887543

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.90  E-value=3.2e-21  Score=182.55  Aligned_cols=286  Identities=21%  Similarity=0.191  Sum_probs=178.5

Q ss_pred             HHHHHHHHhhcCCCc-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHh-hhcccCCcEEEEeCC--C-----
Q 016612           58 DALESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVNT--C-----  127 (386)
Q Consensus        58 ~~l~~~l~~~~g~~~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~-~~~~~~g~~~~~v~~--~-----  127 (386)
                      +..++.+++++|.+. .+++++|++|+. ++.++++|||+|++++|.|+++...+. ..++..|.+++.++.  +     
T Consensus        68 ~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  147 (402)
T cd00378          68 DLAIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGL  147 (402)
T ss_pred             HHHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCC
Confidence            335667889999874 456678898886 556688999999999999987643211 124566765554432  2     


Q ss_pred             -CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCc-----cCCCCCCccEEEecccc
Q 016612          128 -DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATK  200 (386)
Q Consensus       128 -d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~-----~~~~~~~~di~~~S~sK  200 (386)
                       |++++++.+. ++++++++++++||  ...|+++|.++|+++|+++|+|++|..+..     ..+.. +.|++++|+||
T Consensus       148 id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK  224 (402)
T cd00378         148 IDYDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHK  224 (402)
T ss_pred             cCHHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEecccc
Confidence             8999999885 68999999888774  567999999999999999999999754432     22233 67999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCCh-hhHHHH----HhcCC-cHHHHHHHHHHHHHHHHHHHhhCCCc
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP-FDCWIC----LRGVK-TMALRVEKQQDNAQKIAEFLASHPRV  274 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~  274 (386)
                      ++.|+   ++|+++++++.+.+.+.........+.+. .....+    ..... ....+.++..++.+.+.+.|.+.. +
T Consensus       225 ~l~G~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~  300 (402)
T cd00378         225 TLRGP---RGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERG-F  300 (402)
T ss_pred             CCCCC---CceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence            98554   57998887646666554433221111111 111111    11111 233444556666666666666542 1


Q ss_pred             ceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          275 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       275 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                                    .+.. . ...+.++++.+++ .....++.+.+...|+.+..+..      |.....          
T Consensus       301 --------------~~~~-~-~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~------p~~~~~----------  348 (402)
T cd00378         301 --------------KVVS-G-GTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTL------PWDPSS----------  348 (402)
T ss_pred             --------------eEee-c-CCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcC------CCCCCC----------
Confidence                          1110 0 1135777777752 22234555556666776654221      111000          


Q ss_pred             cCCCCCeEEEEec--------cCChHHHHHHHHHHHhc
Q 016612          354 RGLTEDLVRISVG--------IEDVNDLISDLDKALRT  383 (386)
Q Consensus       354 ~~~~~~~iRis~~--------~~~~~~~i~~l~~~l~~  383 (386)
                       ......+|++++        .++++.+++.|++.++.
T Consensus       349 -~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         349 -PFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             -CCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence             112456999884        37788888888877754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK04311 selenocysteine synthase; Provisional

Probab=99.89  E-value=1.6e-21  Score=184.02  Aligned_cols=212  Identities=24%  Similarity=0.326  Sum_probs=158.8

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCC---cHHHHHhhhcccCCcEEEEeCC---CCH
Q 016612           56 TRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYG---GTDRLLSRVTPKTGVVVKRVNT---CDL  129 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~---~~~~~~~~~~~~~g~~~~~v~~---~d~  129 (386)
                      ....+++.+++++|.++.+++++|++|+.+++..+.+||+|++++..|.   +... +....+..|+++++++.   .++
T Consensus       128 r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~-i~~~~~~~G~~l~~v~~~~~t~~  206 (464)
T PRK04311        128 RDRALAALLCALTGAEDALVVNNNAAAVLLALNALAAGKEVIVSRGELVEIGGAFR-IPDVMRQAGARLVEVGTTNRTHL  206 (464)
T ss_pred             HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCEEEEcchhhhhcCcchh-hHHHHHHCCcEEEEECCCCCCCH
Confidence            4678999999999999999999999999877777899999999987543   2232 23455788999999986   378


Q ss_pred             HHHHhhhCCCceEEEEeCCCCC--Cc--ccccHHHHHHHHHHcCCEEEEeCCCCC------------CCccCCCCCCccE
Q 016612          130 DEVASAIGPWTKLVWVESPTNP--RQ--QICDIRKIAEMAHAHGALLLVDNSIMS------------PVLSRPLELGADI  193 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~np--tG--~~~~l~~i~~la~~~~~~li~D~a~~~------------~~~~~~~~~~~di  193 (386)
                      ++++++++++|++|++++++|+  +|  ...|+++|+++|++||+++++|.+++.            +...++.+.|+|+
T Consensus       207 ~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDi  286 (464)
T PRK04311        207 RDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDL  286 (464)
T ss_pred             HHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcE
Confidence            8999999999999999999998  34  567999999999999999999995321            1112344579999


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHH--hhh---hcCCCCChhhHHH-----------HHhcCCcHHHHHHHH
Q 016612          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQN---AEGSGLAPFDCWI-----------CLRGVKTMALRVEKQ  257 (386)
Q Consensus       194 ~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  257 (386)
                      +++|++|+++||.   +|+++++++ +.+.++.  +..   ..+..+++..+++           ....++.+..+.+++
T Consensus       287 v~fSg~K~LgGp~---~G~i~g~~~-li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~  362 (464)
T PRK04311        287 VTFSGDKLLGGPQ---AGIIVGKKE-LIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEEL  362 (464)
T ss_pred             EEecCcccccCCc---eEEEEEcHH-HHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHH
Confidence            9999999998773   799998754 4443431  111   1122333333332           233444567778889


Q ss_pred             HHHHHHHHHHHhhCC
Q 016612          258 QDNAQKIAEFLASHP  272 (386)
Q Consensus       258 ~~~~~~l~~~l~~~~  272 (386)
                      .++++.+.++|+.+.
T Consensus       363 ~~~A~~la~~L~~~~  377 (464)
T PRK04311        363 RARAERLAAALKAAL  377 (464)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999998764

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.89  E-value=2e-20  Score=174.82  Aligned_cols=256  Identities=16%  Similarity=0.137  Sum_probs=176.4

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      +.++++++++++++|.++.++++||++|+.+ +.++ +++||+|+++.++|.++.    ..+...|++++.++.+     
T Consensus        31 ~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~----~~~~~~G~~~v~~d~d~~~~~  106 (375)
T PRK11706         31 GFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDIRPDTMN  106 (375)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCCcCC
Confidence            5789999999999999999999999999875 4444 789999999999999885    4455789999998753     


Q ss_pred             -CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC--CCCCCccEEEeccc--ccc
Q 016612          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSAT--KFI  202 (386)
Q Consensus       128 -d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~--~~~~~~di~~~S~s--K~~  202 (386)
                       |++++++.+++++++|+++   |++|...++++|.++|+++|+++|+|++|+.+...+  +.....|+.++|++  |.+
T Consensus       107 ~d~~~le~~i~~~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l  183 (375)
T PRK11706        107 IDETLIEAAITPKTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNY  183 (375)
T ss_pred             cCHHHHHHhcCCCCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccc
Confidence             7899999999899999965   468999999999999999999999999998776322  22223578888877  998


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhc-------------------CC--CCChhhHHHHHhcCCcHHHHHHHHHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAE-------------------GS--GLAPFDCWICLRGVKTMALRVEKQQDNA  261 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~-------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (386)
                      +.  |. +|.++++++++.++++.+...+                   +.  .++..+++.....++.+....++..++.
T Consensus       184 ~~--g~-gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~  260 (375)
T PRK11706        184 TA--GE-GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALW  260 (375)
T ss_pred             cc--cC-CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53  32 4555566677776655544321                   11  1234455555555555666666666666


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCC
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFG  329 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G  329 (386)
                      +.+.+.+.+.+....+..+..   +.      .......++++.+++.....++.+.+...||.++..
T Consensus       261 ~~~~~~L~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~~~~  319 (375)
T PRK11706        261 QRYYDALAPLAEAGRIELPSI---PD------DCKHNAHMFYIKLRDLEDRSALINFLKEAGIMAVFH  319 (375)
T ss_pred             HHHHHHhcCCCcCCeeecCCC---CC------CCceeeEEEEEEECCcCCHHHHHHHHHHCCCCcccc
Confidence            666666665431000111111   00      001123455666654445778888888889876543

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.89  E-value=1.5e-21  Score=185.51  Aligned_cols=283  Identities=21%  Similarity=0.173  Sum_probs=177.2

Q ss_pred             HHHHHhhcCCCce-EEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHh-hhcccCCcEEEEeCC------CCHHH
Q 016612           61 ESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVNT------CDLDE  131 (386)
Q Consensus        61 ~~~l~~~~g~~~~-i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~-~~~~~~g~~~~~v~~------~d~~~  131 (386)
                      ++.+++++|.+.. +++++|++++. ++.++++|||+|+++.|+|+++...+. ......|.+++.++.      .|+++
T Consensus        77 ~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~  156 (416)
T PRK00011         77 IDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDE  156 (416)
T ss_pred             HHHHHHHhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHH
Confidence            4488999998844 66678998886 555678999999999999976532211 112344567776654      27899


Q ss_pred             HHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCc-----cCCCCCCccEEEeccccccccC
Q 016612          132 VASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGH  205 (386)
Q Consensus       132 l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~-----~~~~~~~~di~~~S~sK~~~g~  205 (386)
                      +++.++ +++++|+++++++  |...|+++|.++|+++|+++|+|++|+.+..     ..... +.|++++|+||++.|+
T Consensus       157 l~~~i~~~~~k~v~~~~~~~--~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~g~  233 (416)
T PRK00011        157 VEKLALEHKPKLIIAGASAY--SRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLRGP  233 (416)
T ss_pred             HHHHHHhcCCCEEEECCCcC--CCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCCCC
Confidence            999886 4799998875544  5667999999999999999999999875543     22333 6899999999998654


Q ss_pred             CCceEEEEEEcChhHHHHHHHhhhhcCCC--CChhhHHHHH---hcC-CcHHHHHHHHHHHHHHHHHHHhhCCCcceEec
Q 016612          206 SDVMAGVLAVKGERLAKELYFLQNAEGSG--LAPFDCWICL---RGV-KTMALRVEKQQDNAQKIAEFLASHPRVKKVNY  279 (386)
Q Consensus       206 ~g~~~G~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  279 (386)
                         ++|+++++++++.+.+..........  .......+..   ..+ ..+..+.++..++++.+.+.|++.. +     
T Consensus       234 ---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-----  304 (416)
T PRK00011        234 ---RGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERG-F-----  304 (416)
T ss_pred             ---CceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-C-----
Confidence               57999987666766665443322111  1111111111   111 1234556666777777777776532 1     


Q ss_pred             CCCCCCCchhhhhhccCCCCceEEEEeCCHH-hHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCC
Q 016612          280 AGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  358 (386)
Q Consensus       280 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  358 (386)
                         +      +..  ....++++++.+++.. ....+.+.+...|+.++.+..      |.....           ...+
T Consensus       305 ---~------~~~--~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~------p~~~~~-----------~~~~  356 (416)
T PRK00011        305 ---R------VVS--GGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAV------PFDPRS-----------PFVT  356 (416)
T ss_pred             ---e------eee--cCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcC------CCCCCC-----------CCCC
Confidence               1      100  0113467777774321 345566677677877653321      100000           0113


Q ss_pred             CeEEEEe--------ccCChHHHHHHHHHHHhc
Q 016612          359 DLVRISV--------GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       359 ~~iRis~--------~~~~~~~~i~~l~~~l~~  383 (386)
                      ..+|++.        ..++++.+++.|++++..
T Consensus       357 ~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        357 SGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             CceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            4588854        247788888888777654

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.89  E-value=4.1e-21  Score=182.25  Aligned_cols=174  Identities=20%  Similarity=0.205  Sum_probs=132.6

Q ss_pred             CCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEE
Q 016612           44 NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (386)
Q Consensus        44 ~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~  122 (386)
                      .+...|+..  +...++++.++++++.+.++++++|++|+. ++.++++||| |++++|.|.++.    ...+..|.+++
T Consensus        69 ~g~~~Y~~~--~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~----~~i~~~G~~~v  141 (460)
T PRK13238         69 RGDEAYAGS--RSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTR----AHIELNGATAV  141 (460)
T ss_pred             hCCcccCCC--CCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchH----HHHHHcCCEEE
Confidence            344567655  345578888888899888888999999987 5566899999 999999888885    33456788887


Q ss_pred             EeCC---------------CCHHHHHhhhC----CCceEEEEeCCCCCCc-cccc---HHHHHHHHHHcCCEEEEeCCCC
Q 016612          123 RVNT---------------CDLDEVASAIG----PWTKLVWVESPTNPRQ-QICD---IRKIAEMAHAHGALLLVDNSIM  179 (386)
Q Consensus       123 ~v~~---------------~d~~~l~~~~~----~~~~~v~~~~~~nptG-~~~~---l~~i~~la~~~~~~li~D~a~~  179 (386)
                      .++.               .|+++|++.++    +++++|++++|+||+| .+.+   +++|.++|++||++||+|+++.
T Consensus       142 ~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~  221 (460)
T PRK13238        142 DLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARF  221 (460)
T ss_pred             EEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence            7764               37899999987    4799999999999998 6654   7899999999999999999874


Q ss_pred             CC-C-c---------cCCC-------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh
Q 016612          180 SP-V-L---------SRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (386)
Q Consensus       180 ~~-~-~---------~~~~-------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~  227 (386)
                      .. . +         ....       ....|++++|.+|.+.++.   +|+++++++++.+.++..
T Consensus       222 ~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~---GG~i~~~d~~l~~~~~~~  284 (460)
T PRK13238        222 AENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNI---GGLLCFRDEDLFTECRTL  284 (460)
T ss_pred             hhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcc---eeEEEcChHHHHHHhhhc
Confidence            31 1 1         1000       1247999999999876653   689988876676666544

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.89  E-value=3.4e-22  Score=185.40  Aligned_cols=270  Identities=18%  Similarity=0.151  Sum_probs=178.4

Q ss_pred             cccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcHHHHHH-HHHHhcC------------C--CCEEEecCCCCCcH
Q 016612           48 DYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG------------T--GEEIVAGDDLYGGT  106 (386)
Q Consensus        48 ~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~gt~al~-~~~~~~~------------~--g~~Vlv~~~~~~~~  106 (386)
                      .|... +.. +.+++.+++++++|.+    ..+++++||+++. ++.++..            +  ++.|+++++.|.++
T Consensus        29 ~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~  108 (345)
T cd06450          29 TWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSV  108 (345)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHH
Confidence            36655 443 6888889999998874    5777888888876 4444321            2  34788999999887


Q ss_pred             HHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhCC------CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEe
Q 016612          107 DRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD  175 (386)
Q Consensus       107 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D  175 (386)
                      ...    ++..|.+++.++.+     |++++++.+++      +++++++++++||+|.+.|+++|.++|+++|+++++|
T Consensus       109 ~~~----~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD  184 (345)
T cd06450         109 EKA----AAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVD  184 (345)
T ss_pred             HHH----HHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEe
Confidence            533    34457788887743     89999999876      7889999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCC-------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC-
Q 016612          176 NSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-  247 (386)
Q Consensus       176 ~a~~~~~~~~~~-------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  247 (386)
                      ++|+.+......       ..+.|++.+|+||++++|.|  +|+++.+                    ....+..+..+ 
T Consensus       185 ~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g--~g~~~~~--------------------~~~~~~~l~~l~  242 (345)
T cd06450         185 AAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLG--CSAVLVR--------------------ALKLWATLRRFG  242 (345)
T ss_pred             chhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcc--hHHHHHH--------------------HHHHHHHHHHHh
Confidence            999866542111       12679999999999877654  6777654                    11112211111 


Q ss_pred             -CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC----HHhHHHHHhhcCcc
Q 016612          248 -KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----LALSKHVVETTKYF  322 (386)
Q Consensus       248 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~  322 (386)
                       ..+..+.++..+.++.+.+.+.+.+.+              .++.   +..+++++|.+..    .....++.+.+...
T Consensus       243 ~~g~~~~~~~~~~~~~~l~~~L~~~~~~--------------~~~~---~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~  305 (345)
T cd06450         243 RDGYGEHIDRIVDLAKYLAELIRADPGF--------------ELLG---EPNLSLVCFRLKPSVKLDELNYDLSDRLNER  305 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCe--------------EEec---CCceeEEEEEECCcchhhHHHHHHHHHHHhc
Confidence             122344455555666666666554321              1110   1235788888755    23455677777666


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccC-ChHHHHHHHHHHHhc
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKALRT  383 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~~~~~i~~l~~~l~~  383 (386)
                      |+....+..     +                 + .++++|++++.. ...+.++.+.++|++
T Consensus       306 g~~~~~~~~-----~-----------------~-~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         306 GGWHVPATT-----L-----------------G-GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             CCEEEEeeE-----E-----------------C-CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            432211110     0                 0 245699999864 477777777777765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.89  E-value=1.2e-21  Score=198.38  Aligned_cols=160  Identities=17%  Similarity=0.095  Sum_probs=124.6

Q ss_pred             hHHHHHHHHHhhcCCC--c-eEEeCcH-HHHHHHHHH-h-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           56 TRDALESLLAKLDKAD--R-ALCFTSG-MAALAAVTH-L-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~-~i~~~~g-t~al~~~~~-~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      ..+++++.+++++|++  + .|++++| |+|++.+.. + +++||+|+++...|++.... ...++..|++++.++.+  
T Consensus        79 ~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~-~~~a~~~G~~v~~v~~~~~  157 (805)
T PLN02724         79 TIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGI-REYALEKGAAAIAVDIEEA  157 (805)
T ss_pred             HHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHH-HHHHHHcCCeEEeccchhc
Confidence            6888999999999974  3 4666665 599986644 3 68999999998899887754 46667889999888753  


Q ss_pred             -----------C--HHHHHhhh----------CCCceEEEEeCCCCCCcccccHHHHHHHHHHc--------CCEEEEeC
Q 016612          128 -----------D--LDEVASAI----------GPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--------GALLLVDN  176 (386)
Q Consensus       128 -----------d--~~~l~~~~----------~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--------~~~li~D~  176 (386)
                                 +  .+++++.+          .+++++|.+++.+|.+|.+.|++.|..+++..        ++++++|.
T Consensus       158 ~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDa  237 (805)
T PLN02724        158 ANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA  237 (805)
T ss_pred             cccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeeh
Confidence                       1  14455542          24678999999999999999999775555532        36899999


Q ss_pred             CCCCCCcc-CCCCCCccEEEeccccccccCCCceEEEEEEcCh
Q 016612          177 SIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       177 a~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      +++.|+.+ +..+.++|++++|+|||++||.|  .|+++++++
T Consensus       238 aQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~G~L~vr~~  278 (805)
T PLN02724        238 AKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--LGALLVRRD  278 (805)
T ss_pred             hhhcCCCCCChhhcCCCEEEEecceeccCCCC--ceEEEEehh
Confidence            99999875 44457899999999999987988  699998854

>TIGR01814 kynureninase kynureninase

Probab=99.89  E-value=1.8e-21  Score=184.03  Aligned_cols=156  Identities=17%  Similarity=0.233  Sum_probs=117.7

Q ss_pred             HHHHHHHHHhhcCCC-c-eEEeCcHHHHHHHH-HHhcCCC---CEEEecCCCCCcHHHHHhhhcccCCcEE----EEeCC
Q 016612           57 RDALESLLAKLDKAD-R-ALCFTSGMAALAAV-THLLGTG---EEIVAGDDLYGGTDRLLSRVTPKTGVVV----KRVNT  126 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~-~-~i~~~~gt~al~~~-~~~~~~g---~~Vlv~~~~~~~~~~~~~~~~~~~g~~~----~~v~~  126 (386)
                      .+++++ + +++|.+ + .++++++|++++.+ .+++++|   +.|++++.+|++....|...++..|+++    +.++.
T Consensus        73 ~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~  150 (406)
T TIGR01814        73 DESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP  150 (406)
T ss_pred             hhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc
Confidence            334444 4 778876 4 44555556888854 4466664   3688888999987766655566778776    34443


Q ss_pred             C-----CHHHHHhhh---CCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEec
Q 016612          127 C-----DLDEVASAI---GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHS  197 (386)
Q Consensus       127 ~-----d~~~l~~~~---~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S  197 (386)
                      .     |++++++.+   +++|++|++++++|.+|.+.|+++|.++|+++|+++++|++|+.|..+ +....++|++++|
T Consensus       151 ~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s  230 (406)
T TIGR01814       151 REEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWC  230 (406)
T ss_pred             CCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEc
Confidence            2     677887776   478999999999999999999999999999999999999999998865 3446789999999


Q ss_pred             cccccccCCCceEEEEEEc
Q 016612          198 ATKFIAGHSDVMAGVLAVK  216 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~  216 (386)
                      +|||+.||+|  +|+++.+
T Consensus       231 ~hK~l~g~pG--~~l~v~~  247 (406)
T TIGR01814       231 TYKYLNAGPG--AGAFVHE  247 (406)
T ss_pred             CccccCCCCC--eEEEEeh
Confidence            9999976666  4544433

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.89  E-value=2.7e-21  Score=179.86  Aligned_cols=304  Identities=21%  Similarity=0.227  Sum_probs=205.9

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh--cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~--~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .+..+++|+.+++++|.+.++.++|||.|+.+++..  +++||+|+++..++.++.    ..+...|.++++++.+    
T Consensus        24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~----~ai~~~G~~pv~~Di~~~~~   99 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATA----SAILWAGAEPVFVDIDPETL   99 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHH----HHHHHTT-EEEEE-BETTTS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHH----HHHHHhccEEEEEeccCCcC
Confidence            368999999999999999999999999999865553  679999999999998886    4556899999999864    


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC--CCCccEEEeccc--cc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSAT--KF  201 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~--~~~~di~~~S~s--K~  201 (386)
                        |++++++++++++++|++.|.   .|...++++|.++|+++|++||+|.+++.|......  ..-.|+.++||+  |.
T Consensus       100 ~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~  176 (363)
T PF01041_consen  100 NIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKI  176 (363)
T ss_dssp             SB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSS
T ss_pred             CcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCC
Confidence              899999999999999996654   688889999999999999999999999988754322  234599999974  88


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhc-----------------CCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAE-----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  264 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  264 (386)
                      +....   ||+++++++++.+.++.+...+                 ...++..++++....++.+..+.++..++++.+
T Consensus       177 i~~ge---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y  253 (363)
T PF01041_consen  177 ITTGE---GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRY  253 (363)
T ss_dssp             S-SSS----EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CcCCC---CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            85433   7999999998888776654322                 124667788888888988999999999999999


Q ss_pred             HHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhhcCcceeccCCCCcccccccccccc
Q 016612          265 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMS  342 (386)
Q Consensus       265 ~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~  342 (386)
                      .+.|...+.+.....+.  .. .        ......+.+.+++.  ...+.+.+.+...|+..+......+...|....
T Consensus       254 ~~~L~~~~~~~~~~~~~--~~-~--------~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~  322 (363)
T PF01041_consen  254 REALAGIPGIKPPPIPD--GA-E--------RSSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVYRS  322 (363)
T ss_dssp             HHHHTTGTTEEEEGCGT--TT-E--------EBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTT
T ss_pred             HHHHhcCCCcccccccc--cc-c--------ccccccccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHHHh
Confidence            99998876432111111  00 0        01122345555543  237788888888888876644223333333221


Q ss_pred             C-----CCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          343 H-----ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       343 ~-----~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      .     ..++....    +....+.+.+...-.++.++.+.++++
T Consensus       323 ~~~~~~~~~P~ae~----l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  323 YPYYAPGDLPNAER----LSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             GEEEETSSSHHHHH----HHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             cCccccCCCHHHHH----HHhCeEECcCCCCCCHHHHHHHhhccC
Confidence            1     12332211    112446777666566666777666654

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.89  E-value=4.7e-21  Score=180.02  Aligned_cols=292  Identities=17%  Similarity=0.164  Sum_probs=177.0

Q ss_pred             ceeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH
Q 016612           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (386)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~   88 (386)
                      .+.+++..+  +.++|..+|.+.++......+.    .........+.+.++++.+++++|.++.++++||++++..++.
T Consensus        27 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~  102 (379)
T TIGR00707        27 KEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKL----VHVSNLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALK  102 (379)
T ss_pred             CEEEEcCcchhhccCCCCCHHHHHHHHHHHhhc----cccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHH
Confidence            346677643  7789986565554322111111    1111112346799999999999999988899999998864433


Q ss_pred             hc----C----CCCEEEecCCCCCcHHHHHhhhc---------ccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCC
Q 016612           89 LL----G----TGEEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (386)
Q Consensus        89 ~~----~----~g~~Vlv~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~np  151 (386)
                      ++    .    +||+|++++|.|+++........         .....++..++..|++++++.+++++++|++++++|+
T Consensus       103 ~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~  182 (379)
T TIGR00707       103 LARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGE  182 (379)
T ss_pred             HHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccC
Confidence            22    2    37999999999976542211110         0111233444555899999999888999999888888


Q ss_pred             Ccccc----cHHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChhHH
Q 016612          152 RQQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (386)
Q Consensus       152 tG~~~----~l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~  221 (386)
                      +|...    ++++|.++|+++|+++|+||+|.. +....     ......|++  ++||.++  +|+|+|+++++ +++.
T Consensus       183 ~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~--~G~riG~~~~~-~~~~  257 (379)
T TIGR00707       183 GGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGLG--GGVPIGATLAK-EEVA  257 (379)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEccccc--CCcccEEEEEc-HHHH
Confidence            77653    389999999999999999999862 11111     112234554  6799995  47899999987 4565


Q ss_pred             HHHHHhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC
Q 016612          222 KELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  299 (386)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~  299 (386)
                      +.+.........+.++..+.++..+++.+.  ...++..+..+.+.+.+++...  .   .+..          ..++.|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~---~~~~----------~~~~~g  322 (379)
T TIGR00707       258 EAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGK--N---YPNK----------EVRGKG  322 (379)
T ss_pred             hhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--h---CCCC----------ccccCc
Confidence            555432222223455566665554443221  2233444444555555543210  0   0110          112346


Q ss_pred             ceEEEEeCCHHhHHHHHhhcCcceeccCC
Q 016612          300 SVLSFLTGSLALSKHVVETTKYFSITVSF  328 (386)
Q Consensus       300 ~~~~~~~~~~~~~~~l~~~l~~~gi~~~~  328 (386)
                      .++++.+++.  ..++.+.+...|+.+.+
T Consensus       323 ~~~~~~~~~~--~~~~~~~l~~~Gv~v~~  349 (379)
T TIGR00707       323 LMLGIELEAP--CKDIVKKALEKGLLVNC  349 (379)
T ss_pred             eEEEEEecCc--HHHHHHHHHHCCcEEee
Confidence            7788887542  45677777777876554

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.89  E-value=1.9e-21  Score=183.41  Aligned_cols=327  Identities=18%  Similarity=0.131  Sum_probs=193.3

Q ss_pred             cceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC--CCchHHHHHH----HHHhhcCCCceEE-eCcHHHH
Q 016612           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALES----LLAKLDKADRALC-FTSGMAA   82 (386)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~----~l~~~~g~~~~i~-~~~gt~a   82 (386)
                      +.+.+|+--+++|.   +|.+.++...... .....+..+++.  |++..+++++    .+++++|.+.+++ ++||+.|
T Consensus        27 ~~~~~~l~~sen~~---~p~v~~a~~~~~~-~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A  102 (416)
T PRK13034         27 QQDHLELIASENFT---SPAVMEAQGSVLT-NKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQA  102 (416)
T ss_pred             HhcCeeecccccCC---CHHHHHHhcchhh-cCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHH
Confidence            34555555467774   4444443221110 011223445565  6778899998    9999999998865 5899988


Q ss_pred             HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhccc--CCc--EEEEeCC------CCHHHHHhhhC-CCceEEEEeCCCC
Q 016612           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK--TGV--VVKRVNT------CDLDEVASAIG-PWTKLVWVESPTN  150 (386)
Q Consensus        83 l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~--~g~--~~~~v~~------~d~~~l~~~~~-~~~~~v~~~~~~n  150 (386)
                      +. ++.++++|||+|++++..|.+...   .-++.  .+.  +...++.      .|++++++.+. .++++|+++.+. 
T Consensus       103 ~~~~l~al~~~GD~Vl~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~-  178 (416)
T PRK13034        103 NGAVYLALLKPGDTILGMSLSHGGHLT---HGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA-  178 (416)
T ss_pred             HHHHHHHhcCCCCEEEEcCccceeeee---cCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc-
Confidence            76 667789999999999999977321   00110  111  1123322      48899998875 478888876554 


Q ss_pred             CCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCC----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHH
Q 016612          151 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (386)
Q Consensus       151 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~  226 (386)
                       .|...|+++|.++|+++|+++++|++|+.|.......    .++|++++|+||+++|+.   +|+++++++.+.+.++.
T Consensus       179 -~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~~~  254 (416)
T PRK13034        179 -YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKINS  254 (416)
T ss_pred             -cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCC---CeEEEECcHHHHHHHHh
Confidence             4788899999999999999999999988766532211    257999999999997765   58888877666555443


Q ss_pred             hhhhc--CCCCChhhHHHHHhcCC----cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc
Q 016612          227 LQNAE--GSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  300 (386)
Q Consensus       227 ~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~  300 (386)
                      .....  +....+..+.+.....+    ....+.++..++++.+.+.|++..         ++-..        +...++
T Consensus       255 ~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G---------~~~~~--------~~~~t~  317 (416)
T PRK13034        255 AVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERG---------YDLVS--------GGTDNH  317 (416)
T ss_pred             hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcC---------CEecc--------CCCCCc
Confidence            32211  11112222222111111    112335667777777777776542         11100        012356


Q ss_pred             eEEEEeCCHH-hHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--------CChH
Q 016612          301 VLSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------EDVN  371 (386)
Q Consensus       301 ~~~~~~~~~~-~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--------~~~~  371 (386)
                      ++.+.+.+.. ....+.+.|...|+.++.-....-..+|.                 -+..+|+|++.        ++++
T Consensus       318 i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~-----------------~~~~lR~~~~~~t~~~~~~~di~  380 (416)
T PRK13034        318 LLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPF-----------------VTSGIRIGTPAGTTRGFGEAEFR  380 (416)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCC-----------------CCCeeEeCcHHHHhCCCCHHHHH
Confidence            6777664432 33445456666666543210000011121                 13459999754        6666


Q ss_pred             HHHHHHHHHHh
Q 016612          372 DLISDLDKALR  382 (386)
Q Consensus       372 ~~i~~l~~~l~  382 (386)
                      ++++.|.+++.
T Consensus       381 ~l~~~l~~~~~  391 (416)
T PRK13034        381 EIANWILDVLD  391 (416)
T ss_pred             HHHHHHHHHHh
Confidence            77777666654

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.88  E-value=9.7e-21  Score=177.52  Aligned_cols=276  Identities=16%  Similarity=0.072  Sum_probs=174.7

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHHHhc------CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL------GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~~~~------~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      ...+++++.+++++|.+  ..+++++|++++. ++.++.      ++||+|++++++|.++.    ..++..|++++.++
T Consensus        59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~----~~~~~~G~~~~~v~  134 (373)
T TIGR03812        59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFE----KAAEMLGLELRYAP  134 (373)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHH----HHHHHcCCeEEEEe
Confidence            35688999999999986  4577777887764 333332      46789999999998764    45667899998887


Q ss_pred             CC-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-----------CCCCC
Q 016612          126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----------RPLEL  189 (386)
Q Consensus       126 ~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-----------~~~~~  189 (386)
                      .+     |++++++.+++++..+++..++||+|.+.|+++|.++|+++|+++++|++|+.+...           +....
T Consensus       135 ~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~  214 (373)
T TIGR03812       135 LDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLP  214 (373)
T ss_pred             eCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCC
Confidence            53     899999999877755555568999999999999999999999999999999744321           11123


Q ss_pred             CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh-cCC-------CCChhhHHHHHhcCCc-----HHHHHHH
Q 016612          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGS-------GLAPFDCWICLRGVKT-----MALRVEK  256 (386)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~  256 (386)
                      +.|.+.+|.+||..++.  ++|+++..++++.+.+...... ...       ..+......+...++.     +....++
T Consensus       215 ~~d~~~~s~~K~~~~~~--~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~  292 (373)
T TIGR03812       215 GVQSITIDPHKMGLSPI--PAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAE  292 (373)
T ss_pred             CCCEEEECccccCCCcC--CceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            67899999999765443  3555544445554443211111 000       1111222222222221     1223444


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLIS  336 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~  336 (386)
                      ..++.+.+.+.+++.+.  ....                ....+++.+.+++.   ..+.+.|...|+.++.+.      
T Consensus       293 ~~~~~~~l~~~L~~~g~--~~~~----------------~~~~~~v~~~~~~~---~~v~~~L~~~gi~v~~~~------  345 (373)
T TIGR03812       293 CMENTRYLVEELKKIGF--EPVI----------------EPVLNIVAFEVDDP---EEVRKKLRDRGWYVSVTR------  345 (373)
T ss_pred             HHHHHHHHHHHHHhCCC--eEEc----------------CCCceEEEEEeCCH---HHHHHHHHHCCceeccCC------
Confidence            55555566666554421  0010                11346777776543   356666666676554321      


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          337 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       337 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                                          .++++|+|++...+++.++.+.++|++
T Consensus       346 --------------------~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       346 --------------------CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             --------------------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence                                145699999877777777777777654

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.88  E-value=3.5e-21  Score=170.87  Aligned_cols=302  Identities=16%  Similarity=0.167  Sum_probs=185.0

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ..++|+.. |.| ++..+.+.....+..    + +.+++++.|.++. ++..++++||+|++...+|++..    ...+.
T Consensus        92 ~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL----~s~~a  167 (472)
T KOG0634|consen   92 RALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSAL----QSMEA  167 (472)
T ss_pred             hhhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHH----Hhccc
Confidence            45788887 877 455555533312211    2 4666666679987 55668999999999999998775    66778


Q ss_pred             CCcEEEEeCCC----CHHHHHhhhC---------CCceEEEE-eCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCC
Q 016612          117 TGVVVKRVNTC----DLDEVASAIG---------PWTKLVWV-ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (386)
Q Consensus       117 ~g~~~~~v~~~----d~~~l~~~~~---------~~~~~v~~-~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~  179 (386)
                      .|+.++.|+++    +++.|++.+.         +++++++. ...+||||..++   .++|.++|++|+++||+||.|.
T Consensus       168 ~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy  247 (472)
T KOG0634|consen  168 LGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYY  247 (472)
T ss_pred             cCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccc
Confidence            99999999986    7888888774         24666665 578999999986   5789999999999999999975


Q ss_pred             CCCc------------------------cCC---CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcC
Q 016612          180 SPVL------------------------SRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  232 (386)
Q Consensus       180 ~~~~------------------------~~~---~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~  232 (386)
                      .-.+                        .+.   ...|.+|-..||||.+ +| |+|.||+.+++..+.+.+.... ...
T Consensus       248 ~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKii-aP-GlRlG~it~~~~~l~ril~~ae-~~t  324 (472)
T KOG0634|consen  248 FLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKII-AP-GLRLGWITGNSLFLKRILDLAE-VAT  324 (472)
T ss_pred             eeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhh-cC-cceeEEeecCHHHHHHHhhhcc-eee
Confidence            2110                        011   1236679999999998 43 7999999998655555444332 222


Q ss_pred             CCCChhhHHHHHhcCCcH---------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEE
Q 016612          233 SGLAPFDCWICLRGVKTM---------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  303 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~  303 (386)
                      .+.+..++..+-..++.+         ......+......+...+.+.          ++..    +..-.++..|-++|
T Consensus       325 ~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~ky----------lp~~----~~~~~~P~aGmFiw  390 (472)
T KOG0634|consen  325 SGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKY----------LPKS----VCEYHPPKAGMFIW  390 (472)
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCC----eeEEecCCcceEEE
Confidence            334444443332222211         111112222222233333321          1111    00011233567778


Q ss_pred             EEeC--------CHH-hHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChH
Q 016612          304 FLTG--------SLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVN  371 (386)
Q Consensus       304 ~~~~--------~~~-~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~  371 (386)
                      ++++        +.. ..+.+...+.++|+....|..+...  |...              .+.-++|++++.   ++.+
T Consensus       391 v~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~--p~~s--------------~~kiffRls~a~a~~e~l~  454 (472)
T KOG0634|consen  391 VEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVD--PESS--------------WSKIFFRLSIAFAEPEKLD  454 (472)
T ss_pred             EEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEc--CccC--------------CCcceEEEEeecCCHHHHH
Confidence            8874        322 4455666667778887777764422  2110              012479999986   5555


Q ss_pred             HHHHHHHHHHhc
Q 016612          372 DLISDLDKALRT  383 (386)
Q Consensus       372 ~~i~~l~~~l~~  383 (386)
                      +.++++..++++
T Consensus       455 ~g~~rf~~~ike  466 (472)
T KOG0634|consen  455 EGIERFGSVIKE  466 (472)
T ss_pred             HHHHHHHHHHHH
Confidence            555666666654

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.88  E-value=1.5e-20  Score=176.21  Aligned_cols=163  Identities=19%  Similarity=0.137  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHhc----CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~~----~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..+++++++++++|.+  ..+++++|++++.. +..+.    ++||+|+++++.|.++.    ..++..|++++.++.+ 
T Consensus        60 ~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~~~  135 (371)
T PRK13520         60 LEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFD----KAADMLGVELRRAPLDD  135 (371)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHH----HHHHHcCceEEEecCCC
Confidence            4678999999999976  35777778888754 33333    35789999999997764    5556778888888753 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc--------CCCCCCccEEE
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVM  195 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~--------~~~~~~~di~~  195 (386)
                          |++++++++++++++|++.+++|++|.+.|+++|.++|+++|+++++|++|+.+..+        +....+.|.+.
T Consensus       136 ~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~  215 (371)
T PRK13520        136 DYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSIT  215 (371)
T ss_pred             CCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEE
Confidence                899999999888888888889999999999999999999999999999999754321        11124679999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHH
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~~~~~  224 (386)
                      +|.+|+..++.  ++|+++..++.+.+.+
T Consensus       216 ~s~~K~~~a~~--~~G~~~~~~~~~~~~l  242 (371)
T PRK13520        216 IDPHKMGLAPI--PAGGILFRDESYLDAL  242 (371)
T ss_pred             ECCccccCccC--CceEEEEcCHHHHHhh
Confidence            99999875443  4677776666554443

>PRK10534 L-threonine aldolase; Provisional

Probab=99.88  E-value=7.7e-21  Score=175.29  Aligned_cols=273  Identities=19%  Similarity=0.216  Sum_probs=171.3

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC-CcEEEEeCCC---
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTC---  127 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---  127 (386)
                      +++...++++.+++++|.+..+++++|++++. .+..++.+||+|+++.|.|......  ...... +.+++.++.+   
T Consensus        32 ~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  109 (333)
T PRK10534         32 DDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEA--GGAAVLGSIQPQPIDAAADG  109 (333)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcC--CchHHhcCceEEeecCCCCC
Confidence            34688899999999999998889999987764 5666789999999988877432210  001122 3566666432   


Q ss_pred             --CHHHHHhhhCC------CceEEEEeCCCCCCcccccH---HHHHHHHHHcCCEEEEeCCCCCCCc---cCC---CCCC
Q 016612          128 --DLDEVASAIGP------WTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVL---SRP---LELG  190 (386)
Q Consensus       128 --d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l---~~i~~la~~~~~~li~D~a~~~~~~---~~~---~~~~  190 (386)
                        |++++++++++      ++++|++++|+  +|.+.+.   ++|.++|+++++++++||+|.....   ...   ....
T Consensus       110 ~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~  187 (333)
T PRK10534        110 TLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQY  187 (333)
T ss_pred             CCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhc
Confidence              79999998865      68999999766  4999875   5567789999999999998653211   101   0113


Q ss_pred             ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCC--ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Q 016612          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  268 (386)
                      .|.++.|+||.++.+   .||+++++ +++.+.+..+....+...  ....+.+....++....++++..++.+.+.+.|
T Consensus       188 ~~~~~~s~SK~~~~~---~G~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L  263 (333)
T PRK10534        188 CDSFTICLSKGLGTP---VGSLLVGN-RDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQL  263 (333)
T ss_pred             CCEEEEEeEcCCCCc---ccceEEcC-HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            465566899988543   23467664 567666665554333222  223333333334332233333344455566666


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCH
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  348 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~  348 (386)
                      ++..         +      .++    ++.++++++.+++. ....+.+.+...|+.+++|..                 
T Consensus       264 ~~~g---------~------~~~----~~~~nfv~~~~~~~-~~~~~~~~l~~~gi~v~~~~~-----------------  306 (333)
T PRK10534        264 REAG---------A------DVM----RQDTNMLFVRVGEE-QAAALGEYMRERNVLINASPI-----------------  306 (333)
T ss_pred             HhCC---------C------ccC----CCCceEEEEECCch-hHHHHHHHHHHcCeeecCCce-----------------
Confidence            5432         1      111    22467888887642 356677788888888766532                 


Q ss_pred             HHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHh
Q 016612          349 EVRQARGLTEDLVRISV----GIEDVNDLISDLDKALR  382 (386)
Q Consensus       349 ~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~  382 (386)
                                  +|++.    +.++++++++.|++.+.
T Consensus       307 ------------~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        307 ------------VRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             ------------EEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence                        56654    35777777777776654

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.88  E-value=2.4e-20  Score=176.35  Aligned_cols=282  Identities=18%  Similarity=0.180  Sum_probs=181.4

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhc----------CCC-CEEEecCCCCCcHHHHHhhh---------
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL----------GTG-EEIVAGDDLYGGTDRLLSRV---------  113 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~----------~~g-~~Vlv~~~~~~~~~~~~~~~---------  113 (386)
                      .+...++++.++++++.+..++++||++|+.+++.++          .+| ++|++....|++.......+         
T Consensus        82 ~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~  161 (401)
T PRK00854         82 NDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGG  161 (401)
T ss_pred             CHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccccc
Confidence            3578889999999999889999999999986444322          123 57776666665542221111         


Q ss_pred             cccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc----
Q 016612          114 TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS----  184 (386)
Q Consensus       114 ~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----  184 (386)
                      .......+..++..|++++++.+.+++++|++++++||+|.+.|    +++|.++|++||+++|+||+|+ .+...    
T Consensus       162 ~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~  241 (401)
T PRK00854        162 FGPFTPGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLA  241 (401)
T ss_pred             CCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhH
Confidence            11122345667778999999999989999999999999999986    9999999999999999999997 32221    


Q ss_pred             -CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHH
Q 016612          185 -RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNA  261 (386)
Q Consensus       185 -~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  261 (386)
                       .......|+++.  +|++++ +.+++|++++++ ++.+.+.........+.++..+++...+++.+..  ..+...+..
T Consensus       242 ~~~~g~~~D~~~~--~K~l~g-g~~~ig~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~  317 (401)
T PRK00854        242 EEHEGIEADVTLI--GKALSG-GFYPVSAVLSNS-EVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMG  317 (401)
T ss_pred             HhhcCCCCCEEEe--cccccC-CccCeEEEEEcH-HHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence             112235688775  699965 335799999874 4544443222222234566677766666654432  223333344


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe-CCHHhHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      +.+.+.|++...      .         . ....++.+.++.+.+ ++......+.+.+...|+.+...           
T Consensus       318 ~~l~~~L~~~~~------~---------~-~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~-----------  370 (401)
T PRK00854        318 AYFLEGLRSIRS------N---------I-VREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDT-----------  370 (401)
T ss_pred             HHHHHHHHhhcc------C---------c-eEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecC-----------
Confidence            444444443210      0         0 011245677888766 33334567777777778765321           


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHh
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALR  382 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~  382 (386)
                                      ..+++|+++.    .++++++++.|++++.
T Consensus       371 ----------------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        371 ----------------HDHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             ----------------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence                            1356999975    3677777777777654

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=5e-20  Score=166.46  Aligned_cols=288  Identities=20%  Similarity=0.219  Sum_probs=200.2

Q ss_pred             chHHHHHHHHHhhcCCC--c-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      .+.+++.+.+..+++.+  + .++.+|||.++. ++..+++|||+||+...+.++..  |..+++.+|.+++.++..   
T Consensus        38 ~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R--~~~ia~~~g~~v~~~~~~wg~  115 (383)
T COG0075          38 GIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGE  115 (383)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHH--HHHHHHHhCCceEEEeCCCCC
Confidence            46788888999999977  3 445578889986 56779999999998877665543  468999999999988764   


Q ss_pred             --CHHHHHhhhC--CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCc-cCCCCCCccEEEecccccc
Q 016612          128 --DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 --d~~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~-~~~~~~~~di~~~S~sK~~  202 (386)
                        |+++++++++  ++.++|.+.|....||...|+++|+++|++||.++|+|.+.+.|.. .+..+++.|+++.+.+|.+
T Consensus       116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l  195 (383)
T COG0075         116 AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKAL  195 (383)
T ss_pred             CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhc
Confidence              9999999998  5688999999999999999999999999999999999999987654 4677899999999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHH---------------HHhhh-hcCCCCChhhHHH-HHhcC-----CcHHHHHHHHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAKEL---------------YFLQN-AEGSGLAPFDCWI-CLRGV-----KTMALRVEKQQDN  260 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~---------------~~~~~-~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~  260 (386)
                      ++|+|  .|++..+++.+....               ..+.. ......++..... +..++     +.+..+.++++.+
T Consensus       196 ~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~  273 (383)
T COG0075         196 GAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRL  273 (383)
T ss_pred             cCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999  588888865443211               11111 1111222222222 22222     2346677777888


Q ss_pred             HHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC-ceEEEEeCCHHhHHHHH-hhcCcceeccCCCCcccccccc
Q 016612          261 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFLTGSLALSKHVV-ETTKYFSITVSFGSVKSLISMP  338 (386)
Q Consensus       261 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~l~~~gi~~~~G~~~~~~~~p  338 (386)
                      .+.+.+.++...         |+-.      . ++...+ .+.++..+......++. ..++.+++.+..|..       
T Consensus       274 ~~a~r~~~~alG---------l~~~------~-~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~-------  330 (383)
T COG0075         274 AEALRAGLEALG---------LELF------A-DPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQG-------  330 (383)
T ss_pred             HHHHHHHHHHcC---------Cccc------c-CcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEeccccc-------
Confidence            888888888653         2111      1 111122 34455554332222222 344455666555442       


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEe-c---cCChHHHHHHHHHHHhcCC
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISV-G---IEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~-~---~~~~~~~i~~l~~~l~~~~  385 (386)
                                      .....++||+- |   .+++...+..|+++|++.+
T Consensus       331 ----------------~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g  365 (383)
T COG0075         331 ----------------PLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG  365 (383)
T ss_pred             ----------------ccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence                            12346699985 4   4888899999999998764

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.87  E-value=6.5e-21  Score=179.39  Aligned_cols=320  Identities=15%  Similarity=0.182  Sum_probs=194.6

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~   88 (386)
                      +.+++..+  +.++|..+|.+.++......+.     ...+.. ..+...++++.++++.+.+++++++||++|+.+++.
T Consensus        32 ~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~  106 (389)
T PRK01278         32 RYLDFASGIAVNSLGHAHPHLVEALKEQAEKL-----WHVSNLYRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIK  106 (389)
T ss_pred             EEEECCccHhhccCCCCCHHHHHHHHHHHHhc-----CccccccCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHH
Confidence            45565532  5678887777665422221110     011111 346778899999998877788999999999864332


Q ss_pred             -h----cCCCC----EEEecCCCCCcHHHHHhhhccc------C---CcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCC
Q 016612           89 -L----LGTGE----EIVAGDDLYGGTDRLLSRVTPK------T---GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (386)
Q Consensus        89 -~----~~~g~----~Vlv~~~~~~~~~~~~~~~~~~------~---g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~n  150 (386)
                       +    .++||    +|++.++.|+++..........      .   ...+..++..|++++++.+++++++|++++++|
T Consensus       107 ~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep~~~  186 (389)
T PRK01278        107 TARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIEPIQG  186 (389)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEecccC
Confidence             2    45666    8999999998774332211100      0   011334555699999999988999999999999


Q ss_pred             CCcccc----cHHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChhH
Q 016612          151 PRQQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       151 ptG~~~----~l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      ++|...    .+++|.++|++||+++|+||+|.. +....     ......|+  .|++|.++  +|+++|++++++ ++
T Consensus       187 ~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~t~sK~l~--~G~~ig~~~~~~-~~  261 (389)
T PRK01278        187 EGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI--MAVAKGIG--GGFPLGACLATE-EA  261 (389)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCE--EEEehhcc--CCcceEEEEEcH-HH
Confidence            988543    489999999999999999999872 11111     11223465  47899995  368999999874 45


Q ss_pred             HHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC
Q 016612          221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  298 (386)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~  298 (386)
                      .+.+.........+.++..++++...++.+..  ..+...+..+.+.+.+++..       ...+.+      ....++.
T Consensus       262 ~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~-------~~~~~~------~~~v~g~  328 (389)
T PRK01278        262 AKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLV-------DRFPDV------IEEVRGK  328 (389)
T ss_pred             HhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------hhCCCc------eeeEecc
Confidence            55443333333334566666666555543311  12233333344444443211       001100      0112445


Q ss_pred             CceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHH
Q 016612          299 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLI  374 (386)
Q Consensus       299 ~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i  374 (386)
                      |.++++.+..  ....+.+.+...|+.+.++.                           .+++|++++    .+++++.+
T Consensus       329 G~~~~i~~~~--~~~~~~~~l~~~GV~~~p~~---------------------------~~~lR~~p~~~~~~~~i~~~l  379 (389)
T PRK01278        329 GLLLGLKCVV--PNRDLVQALRDEGLLTVGAG---------------------------DNVVRLLPPLIITEEEIDEAL  379 (389)
T ss_pred             cEEEEEEEec--CHHHHHHHHHHCCeEEeecC---------------------------CCEEEEeCCcccCHHHHHHHH
Confidence            6777777643  24566666666677654332                           345999864    47788888


Q ss_pred             HHHHHHHhc
Q 016612          375 SDLDKALRT  383 (386)
Q Consensus       375 ~~l~~~l~~  383 (386)
                      +.|.+++++
T Consensus       380 ~~l~~~l~~  388 (389)
T PRK01278        380 ERLERAAES  388 (389)
T ss_pred             HHHHHHHHh
Confidence            888888765

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.87  E-value=1.1e-20  Score=178.47  Aligned_cols=283  Identities=20%  Similarity=0.210  Sum_probs=180.6

Q ss_pred             CCchHHHHHHHHHhhcCCC---ceEEeCcHHHHHHHHHH-hcCCC-CEEEecCCCCCcHHHHHhhhc---------ccCC
Q 016612           53 GNPTRDALESLLAKLDKAD---RALCFTSGMAALAAVTH-LLGTG-EEIVAGDDLYGGTDRLLSRVT---------PKTG  118 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~---~~i~~~~gt~al~~~~~-~~~~g-~~Vlv~~~~~~~~~~~~~~~~---------~~~g  118 (386)
                      ..+...++++.++++++.+   +.++++||++|+.+++. ...+| +.|+..++.|+++........         ...+
T Consensus        83 ~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  162 (398)
T PRK03244         83 ATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLP  162 (398)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCC
Confidence            3345678999999988753   67777888999864433 33344 467777778876632211111         1112


Q ss_pred             cEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCC
Q 016612          119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLE  188 (386)
Q Consensus       119 ~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~  188 (386)
                      .++..++..|++++++.+.+++++|++++++||+|.+.|    +++|.++|++||+++|+||+++. +...     ....
T Consensus       163 ~~~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~  242 (398)
T PRK03244        163 GGVEHVPYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDG  242 (398)
T ss_pred             CCceEeCCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhC
Confidence            345666767999999998888999999999999999987    89999999999999999999852 1111     1122


Q ss_pred             CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHH
Q 016612          189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAE  266 (386)
Q Consensus       189 ~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~  266 (386)
                      ...|++  ++||+++  +|+++|+++++++ +.+.+.........+.++..+.++...++.+..  ..++..+..+.+.+
T Consensus       243 ~~pDi~--t~sK~l~--~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~  317 (398)
T PRK03244        243 VTPDVV--TLAKGLG--GGLPIGACLAFGP-AADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRA  317 (398)
T ss_pred             CCCCEE--EEchhhh--CCcccEEEEEcHH-HHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            346765  6689996  3688999998754 555443322222334556666665555442221  12222233333333


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCC
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  346 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~  346 (386)
                      .+++..      .+.+          ...++.|.++++.++.. ....+.+++..+|+.+++.                 
T Consensus       318 ~L~~~~------~~~~----------~~v~g~g~~~~i~~~~~-~~~~~~~~l~~~Gv~~~~~-----------------  363 (398)
T PRK03244        318 GIEALG------HPLV----------DHVRGRGLLLGIVLTAP-VAKAVEAAAREAGFLVNAV-----------------  363 (398)
T ss_pred             HHHhcC------CCce----------eeEeeccEEEEEEEecc-HHHHHHHHHHHCCeEEeec-----------------
Confidence            333211      0100          11245688899888543 4667888888888865431                 


Q ss_pred             CHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          347 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       347 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                                ..+.+|++++.    ++++++++.|+++++++
T Consensus       364 ----------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~  395 (398)
T PRK03244        364 ----------APDVIRLAPPLIITDAQVDAFVAALPAILDAA  395 (398)
T ss_pred             ----------CCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence                      12459999654    88888888888888754

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.87  E-value=1.5e-19  Score=170.92  Aligned_cols=253  Identities=19%  Similarity=0.137  Sum_probs=178.9

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHh---------cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL---------LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~---------~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      +...++++.+++++|.+.+++++||++++. ++.++         ++|||+|+++.++|.++...    +...|.+++.+
T Consensus        63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~----v~~~G~~pv~v  138 (438)
T PRK15407         63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNP----IIQNGLVPVFV  138 (438)
T ss_pred             hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHH----HHHcCCEEEEE
Confidence            567899999999999999999999998876 44333         58999999999999888643    34678888887


Q ss_pred             CCC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCC--ccEEEe
Q 016612          125 NTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMH  196 (386)
Q Consensus       125 ~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~--~di~~~  196 (386)
                      +.+      |++++++.+++++++|+++++   .|...++++|.++|+++|++||+|++++.|...+....|  .|+.++
T Consensus       139 dvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~f  215 (438)
T PRK15407        139 DVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATL  215 (438)
T ss_pred             ecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceEEE
Confidence            653      789999999999999998874   677789999999999999999999999988754332222  388888


Q ss_pred             ccc--cccccCCCceEEEEEEcChhHHHHHHHhhhhc---------------------------------------CCCC
Q 016612          197 SAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE---------------------------------------GSGL  235 (386)
Q Consensus       197 S~s--K~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~---------------------------------------~~~~  235 (386)
                      ||+  |.+...   .||+++++++++.+.++.+...+                                       ...+
T Consensus       216 Sf~~~k~~~~g---eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rm  292 (438)
T PRK15407        216 SFYPAHHITMG---EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKI  292 (438)
T ss_pred             eCCCCCCcccc---CceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCc
Confidence            876  445432   26999999988876655443211                                       1235


Q ss_pred             ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHH
Q 016612          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSK  313 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~  313 (386)
                      +..++++.+..++.+..+.++..++++.+.+.|...+..  ...+..+  ++.       ......+.+.+++  ....+
T Consensus       293 sel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~--~~~~~~~--~~~-------~~~~~~~~i~~~~~~~~~Rd  361 (438)
T PRK15407        293 TDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDF--LILPEAT--PNS-------DPSWFGFPITVKEDAGFTRV  361 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--cccCcCC--CCC-------eeEEEEEEEEECCcCCCCHH
Confidence            556777777778888888888888888888887654310  1111110  000       0011233444433  22367


Q ss_pred             HHHhhcCcceeccCC
Q 016612          314 HVVETTKYFSITVSF  328 (386)
Q Consensus       314 ~l~~~l~~~gi~~~~  328 (386)
                      ++.+.|...||..+.
T Consensus       362 ~l~~~L~~~GI~~~~  376 (438)
T PRK15407        362 ELVKYLEENKIGTRL  376 (438)
T ss_pred             HHHHHHHHCCCCccc
Confidence            888888888887653

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.86  E-value=1.3e-20  Score=178.02  Aligned_cols=284  Identities=17%  Similarity=0.232  Sum_probs=179.2

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH-hcCCC-------CEEEecCCCCCcHHHHHhhhcccC-------
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTG-------EEIVAGDDLYGGTDRLLSRVTPKT-------  117 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~-~~~~g-------~~Vlv~~~~~~~~~~~~~~~~~~~-------  117 (386)
                      ..+.+.++++.++++.+.++.++++||++|+.+++. +...+       ++|++.++.|+++...........       
T Consensus        79 ~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~  158 (396)
T PRK02627         79 YIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFE  158 (396)
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCC
Confidence            356899999999999988888999999999874433 32222       679999998876632211111000       


Q ss_pred             --CcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccc-cc---HHHHHHHHHHcCCEEEEeCCCCC-CCcc---C--
Q 016612          118 --GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI-CD---IRKIAEMAHAHGALLLVDNSIMS-PVLS---R--  185 (386)
Q Consensus       118 --g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~-~~---l~~i~~la~~~~~~li~D~a~~~-~~~~---~--  185 (386)
                        ...+..++..|++++++.+++++++|++++++||+|.. .+   +++|.++|+++|+++|+||+|+. +...   .  
T Consensus       159 ~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~  238 (396)
T PRK02627        159 PLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQ  238 (396)
T ss_pred             CCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeeh
Confidence              11234455569999999998899999999999999954 33   89999999999999999999872 2111   1  


Q ss_pred             CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHH
Q 016612          186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQK  263 (386)
Q Consensus       186 ~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  263 (386)
                      ......|++  ++||.++  +|+|+|+++++ +.+.+.+.........+.++..++++...++.+..  ..+...+..+.
T Consensus       239 ~~~~~pdi~--t~sK~~~--~G~rig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~  313 (396)
T PRK02627        239 HYGIEPDIM--TLAKGLG--GGVPIGAVLAK-EKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEY  313 (396)
T ss_pred             hcCCCCCEE--EEcchhh--CCcccEEEEEc-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            112234654  6899995  46899999987 44555443322333345566666665555543221  12233333344


Q ss_pred             HHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccC
Q 016612          264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  343 (386)
Q Consensus       264 l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~  343 (386)
                      +.+.+.+..          ..++..    ...++.|.++++.++.  ...++.+.+...|+.+.++.             
T Consensus       314 ~~~~l~~~~----------~~~~~~----~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~-------------  364 (396)
T PRK02627        314 LRAKLRELL----------EKYPGI----KEVRGLGLMIGIELDR--PAAEIVKKALEKGLLINVTG-------------  364 (396)
T ss_pred             HHHHHHHHH----------HhCCCe----eeeccCcEEEEEEecC--cHHHHHHHHHHCCeEEeecC-------------
Confidence            444443321          001100    1123457788888732  25567777766687655432             


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          344 ASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       344 ~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                                    .+++|++++    .+++++.++.|++++++.
T Consensus       365 --------------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        365 --------------DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             --------------CCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence                          245999864    478888888888887653

>PRK07505 hypothetical protein; Provisional

Probab=99.86  E-value=1.4e-19  Score=170.88  Aligned_cols=321  Identities=17%  Similarity=0.162  Sum_probs=188.5

Q ss_pred             ceeeccCCCCCCCC-CcccceeeeeeeecCCCCCCC--CccccC--CCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHH
Q 016612           11 TLLMNFSNEFDPYG-ALSTPLYQTATFKQPSATENG--PYDYTR--SGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (386)
Q Consensus        11 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~--~~~y~~--~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~   85 (386)
                      ...++++ +++++| ..+|.+.++...   ++...+  ....+.  ...+...++++.++++++. +.+++++|++|...
T Consensus        46 ~~~ld~~-s~~~lgl~~~p~v~~A~~~---~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~  120 (402)
T PRK07505         46 HTFVNFV-SCSYLGLDTHPAIIEGAVD---ALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLG  120 (402)
T ss_pred             ceEEEee-cCCccCCCCCHHHHHHHHH---HHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHH
Confidence            3467887 578888 556655553221   111111  111111  1345789999999999988 78888899877653


Q ss_pred             HHHh-----cCCCC-EEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHH
Q 016612           86 VTHL-----LGTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (386)
Q Consensus        86 ~~~~-----~~~g~-~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~  159 (386)
                      ++.+     ..+|+ .|++.+..|++.........+ .+.+++.++..|+++++++++++++++++++|+||+|.+.+++
T Consensus       121 ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~  199 (402)
T PRK07505        121 ILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIAPVK  199 (402)
T ss_pred             HHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCCCCHHHHHHHHhcCCCEEEEEecccccCCcCCHH
Confidence            3322     22232 355555444433211122232 3568888898999999999887788999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCCCCCCc---c-----CCC---CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh
Q 016612          160 KIAEMAHAHGALLLVDNSIMSPVL---S-----RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a~~~~~~---~-----~~~---~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~  228 (386)
                      +|.++|+++|+++|+||+|+.+.+   .     ...   ..+.++++.|++|.++++    +|+++..++++.+.+....
T Consensus       200 ~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~  275 (402)
T PRK07505        200 ELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS----GGVIMLGDAEQIELILRYA  275 (402)
T ss_pred             HHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc----CeEEEeCCHHHHHHHHHhC
Confidence            999999999999999999853211   1     111   123468888999999643    3777665566666554433


Q ss_pred             hhc--CCCCChhhHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC-c
Q 016612          229 NAE--GSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG-S  300 (386)
Q Consensus       229 ~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~  300 (386)
                      ...  +...++....++...++     .+..+.+...++.+.+...+..                       ...+.+ .
T Consensus       276 ~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------------~~~g~~~~  332 (402)
T PRK07505        276 GPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPT-----------------------EQSGSFLP  332 (402)
T ss_pred             CCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHh-----------------------cCCCCCCC
Confidence            221  12333344444333322     1111112222222211111100                       001122 2


Q ss_pred             eEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHH
Q 016612          301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISD  376 (386)
Q Consensus       301 ~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~  376 (386)
                      +..+.+++.....++.+.+...|+.+++...      |..              +....+||++++    .++++++++.
T Consensus       333 i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------p~~--------------~~~~~~lRi~~~~~~t~eei~~~~~~  392 (402)
T PRK07505        333 IRLIYIGDEDTAIKAAKQLLDRGFYTSPVFF------PVV--------------AKGRAGLRIMFRASHTNDEIKRLCSL  392 (402)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCeEeeecC------CCC--------------CCCCceEEEecCccCCHHHHHHHHHH
Confidence            2344444443467788888888887665321      100              012357999996    3788888888


Q ss_pred             HHHHHhcC
Q 016612          377 LDKALRTG  384 (386)
Q Consensus       377 l~~~l~~~  384 (386)
                      |++++++.
T Consensus       393 l~~~l~~~  400 (402)
T PRK07505        393 LKEILDEG  400 (402)
T ss_pred             HHHHHHhh
Confidence            88887764

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.86  E-value=1.4e-19  Score=169.50  Aligned_cols=295  Identities=16%  Similarity=0.133  Sum_probs=187.3

Q ss_pred             ccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           47 YDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      ..|+..  +...++++.+++++|.+.++++++|++|+. ++.++++|||.| +++|.|..+.    ..+...|.+.+.++
T Consensus        47 ~~Y~~~--~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~----~~i~~~Ga~pv~v~  119 (431)
T cd00617          47 EAYAGS--KSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTR----GHIEANGAVPVDLV  119 (431)
T ss_pred             CccCCC--CCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchH----HHHHhCCCEeEEEe
Confidence            346544  346688899999999999999999999987 556689999987 6888888875    34456777777665


Q ss_pred             C---------------CCHHHHHhhhCCC----ceEEEEeCCCCCC-ccccc---HHHHHHHHHHcCCEEEEeCCCCCC-
Q 016612          126 T---------------CDLDEVASAIGPW----TKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMSP-  181 (386)
Q Consensus       126 ~---------------~d~~~l~~~~~~~----~~~v~~~~~~npt-G~~~~---l~~i~~la~~~~~~li~D~a~~~~-  181 (386)
                      .               .|+++|+++++++    +++|+++.|+||+ |...+   +++|.++|++||++||+|+++... 
T Consensus       120 i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~n  199 (431)
T cd00617         120 IDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAEN  199 (431)
T ss_pred             cccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhh
Confidence            4               3789999999865    8899999999998 77775   678899999999999999996532 


Q ss_pred             ----------CccCCC-------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh-----cCCCCChhh
Q 016612          182 ----------VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-----EGSGLAPFD  239 (386)
Q Consensus       182 ----------~~~~~~-------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~  239 (386)
                                ....+.       ....|.+.+|++|...++.   +|+++++++++.+.++.....     ...+++..+
T Consensus       200 a~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~---GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~  276 (431)
T cd00617         200 AYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI---GGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRD  276 (431)
T ss_pred             hhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc---ceEEEeCcHHHHHHHHHhccccCCccccccccHHH
Confidence                      111111       1257889999999876653   689999877677666532211     112333333


Q ss_pred             HHHHHhcCCcH--HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe-----------
Q 016612          240 CWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-----------  306 (386)
Q Consensus       240 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-----------  306 (386)
                      ..++..+++..  ....++..++.+.+.+.|++..         ++..        .|. .+..+++..           
T Consensus       277 ~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~G---------~~v~--------~P~-Ggh~v~~d~~~~~~~~~~~~  338 (431)
T cd00617         277 MEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEAG---------VPIV--------EPA-GGHAVFIDAREFLPHIPQEQ  338 (431)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCC---------CCcc--------CCC-cceEEEEEhHHhcCCCCccc
Confidence            33333233221  2334444555566667776542         1111        111 123333332           


Q ss_pred             -CCHHhHHHHHhhcCcceeccCCCCccccccccccc-cCCCCCHHHHHhcCCCCCeEEEEec-----cCChHHHHHHHHH
Q 016612          307 -GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM-SHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDK  379 (386)
Q Consensus       307 -~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i~~l~~  379 (386)
                       +...++.+++.+.++.++..  |..    ..+... +..-.        ...-..+|+.+.     .++++.+.+.+.+
T Consensus       339 ~~~~~la~~L~~e~gV~~~~~--g~~----~~~~~~~~~~~~--------~~~~~~~rl~~prr~~t~~~~~~~~~~~~~  404 (431)
T cd00617         339 FPAQALAAELYLEAGVRAVEL--GIF----SAGRDPNTGENK--------YPELELVRLAIPRRVYTQDHMDYVAAAVIA  404 (431)
T ss_pred             CcHHHHHHHHHHHcCeeEEee--cce----ecccCCCCCccc--------CCccceeEEeccccccCHHHHHHHHHHHHH
Confidence             24455667777777665432  111    011100 00000        001367999984     4888888888888


Q ss_pred             HHhc
Q 016612          380 ALRT  383 (386)
Q Consensus       380 ~l~~  383 (386)
                      .+++
T Consensus       405 ~~~~  408 (431)
T cd00617         405 LYER  408 (431)
T ss_pred             HHhh
Confidence            8765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.86  E-value=2.4e-20  Score=177.34  Aligned_cols=321  Identities=16%  Similarity=0.159  Sum_probs=194.2

Q ss_pred             ceeeccCCCCCC--CCCcccceeeeeeeecCCCCCCCCccccCC-C-CchHHHHHHHHHhhcC--CCceEEeCcHHHHHH
Q 016612           11 TLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (386)
Q Consensus        11 ~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~   84 (386)
                      ..++++..++++  +|..+|.+.++......     ....|... + .+...++++.++++++  .+..++++||++|+.
T Consensus        36 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~  110 (413)
T cd00610          36 NRYLDFLSGIGVLNLGHNHPEVVEALKEQLA-----KLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVE  110 (413)
T ss_pred             CEEEEcCccHHhhccCCCCHHHHHHHHHHHH-----hCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHH
Confidence            356677644443  77656655543222111     11223322 2 4578999999999998  567888899999987


Q ss_pred             HHHH-h--cCCCCEEEecCCCCCcHHHHHhhhccc---------CCcEEEEeCCC-----------CHHHHHhhhCC---
Q 016612           85 AVTH-L--LGTGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTC-----------DLDEVASAIGP---  138 (386)
Q Consensus        85 ~~~~-~--~~~g~~Vlv~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~-----------d~~~l~~~~~~---  138 (386)
                      +++. +  ..+++.|++.++.|++...........         ...++..++.+           |++++++.+++   
T Consensus       111 ~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  190 (413)
T cd00610         111 AALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPE  190 (413)
T ss_pred             HHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCC
Confidence            5443 3  367899999999988864332222111         12345666665           78899988864   


Q ss_pred             CceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCC-Ccc-----CCCCCCccEEEeccccccccCCCc
Q 016612          139 WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS-----RPLELGADIVMHSATKFIAGHSDV  208 (386)
Q Consensus       139 ~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~-~~~-----~~~~~~~di~~~S~sK~~~g~~g~  208 (386)
                      +++++++++.++++|.+.+    +++|.++|+++|+++|+||+++.. ...     +......|++  |+||++++  |+
T Consensus       191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~--g~  266 (413)
T cd00610         191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGG--GL  266 (413)
T ss_pred             CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeE--EEcccccC--cc
Confidence            6788888888888899886    999999999999999999998632 111     1112234654  67899965  57


Q ss_pred             eEEEEEEcChhHHHHH--HHhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCC
Q 016612          209 MAGVLAVKGERLAKEL--YFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  284 (386)
Q Consensus       209 ~~G~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  284 (386)
                      ++|+++++ +++.+.+  ...........++..+.++...++.+.  ...++..+..+.+.+.+++...       .. .
T Consensus       267 ~~g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~-------~~-~  337 (413)
T cd00610         267 PLGAVLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAE-------KH-P  337 (413)
T ss_pred             ccEEEEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------hC-C
Confidence            89999886 5565543  122222223445555555444443322  1223334444444444443210       00 0


Q ss_pred             CCchhhhhhccCCCCceEEEEeCCH--------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          285 HPGHELHYSQAKGAGSVLSFLTGSL--------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       285 ~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                      .     . ...++.++++++.+.+.        .....+.+.+...|+.+.++.                          
T Consensus       338 ~-----~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~--------------------------  385 (413)
T cd00610         338 L-----V-GDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG--------------------------  385 (413)
T ss_pred             c-----E-EEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC--------------------------
Confidence            0     0 01134678899888543        456778888888888665432                          


Q ss_pred             CCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          357 TEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       357 ~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                       .+.+|++++....++.++.+.+.|+
T Consensus       386 -~~~lR~~~~~~~t~~~i~~~~~~l~  410 (413)
T cd00610         386 -GNVIRLLPPLIITEEEIDEGLDALD  410 (413)
T ss_pred             -CCEEEEECCCcCCHHHHHHHHHHHH
Confidence             2349999876544444444444443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.85  E-value=7.6e-20  Score=172.31  Aligned_cols=306  Identities=15%  Similarity=0.161  Sum_probs=185.2

Q ss_pred             CCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhc---------
Q 016612           21 DPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL---------   90 (386)
Q Consensus        21 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~---------   90 (386)
                      ..+|..+|.+.++......+    ... +++. ..+...++++.++++.+.+..++++||++|+.+++.+.         
T Consensus        52 ~~lGh~~p~v~~ai~~~~~~----~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g  126 (396)
T PRK04073         52 VNQGHRHPKIIQALKDQADK----VTL-TSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKG  126 (396)
T ss_pred             ccCCCCCHHHHHHHHHHHhh----ccc-cccccCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccC
Confidence            34677777766543222111    111 1222 34567788999999888788999999999986443321         


Q ss_pred             -CCC-CEEEecCCCCCcH-HHHHhhhccc------CC---cEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc-
Q 016612           91 -GTG-EEIVAGDDLYGGT-DRLLSRVTPK------TG---VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD-  157 (386)
Q Consensus        91 -~~g-~~Vlv~~~~~~~~-~~~~~~~~~~------~g---~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~-  157 (386)
                       ++| ++|++.+..|++. ...+ .+...      ++   ..+..++..|++++++.+++++++|++++++||+|.+.| 
T Consensus       127 ~~~~r~~ii~~~~~~HG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~viiep~~~~~G~~~~~  205 (396)
T PRK04073        127 VEPNKAEIIACEGNFHGRTMAAV-SLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAITPNTAAFLVEPIQGEAGINIPP  205 (396)
T ss_pred             CCCCCCEEEEECCCcCCCCHHHH-hhcCCcccccCCCCCCCCceEeCCCCHHHHHHhcccCeEEEEEcCccCCCCCccCC
Confidence             133 6777776666554 2222 11111      10   123556667999999999889999999999999999976 


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh
Q 016612          158 ---IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (386)
Q Consensus       158 ---l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~  228 (386)
                         +++|.++|+++|+++|+||+|.. +...     +......|+++  +||.+++ +|+++|+++++ +++.+.+....
T Consensus       206 ~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~--~sK~lg~-gg~~ig~~~~~-~~i~~~~~~~~  281 (396)
T PRK04073        206 EGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYI--LGKALGG-GVFPISCVAAN-RDILGVFTPGS  281 (396)
T ss_pred             HHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEE--ecccccC-CCCcceEEEEc-HHHHhhhcCCC
Confidence               89999999999999999999872 2111     11223467665  6899954 56789999987 45655443322


Q ss_pred             hhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe
Q 016612          229 NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  306 (386)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~  306 (386)
                      .....+.++..++++...++.+..  ..+...+..+.+.+.+++..      .+.+          ...++.|.++.+.+
T Consensus       282 ~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l~------~~~i----------~~~~~~g~~~~~~~  345 (396)
T PRK04073        282 HGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEID------NPMI----------KEVRGRGLFIGVEL  345 (396)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc------CCcc----------cceecceEEEEEEe
Confidence            222334566666666555543211  11222233333444443321      0111          11245678888877


Q ss_pred             CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHH
Q 016612          307 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKAL  381 (386)
Q Consensus       307 ~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l  381 (386)
                      ..  ....+.+.+...|+.+.+.                           .+++||+++.    .++++++++.|++++
T Consensus       346 ~~--~~~~~~~~l~~~Gv~~~~~---------------------------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        346 NE--PARPYCEALKEEGLLCKET---------------------------HETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             cc--hHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence            53  2456666666677754321                           2356999964    466777777776654

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.85  E-value=8.5e-20  Score=174.91  Aligned_cols=156  Identities=26%  Similarity=0.344  Sum_probs=124.0

Q ss_pred             HHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----CH
Q 016612           58 DALESLLAKLDKAD--RALCFTSGMAALAAV-THL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DL  129 (386)
Q Consensus        58 ~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~  129 (386)
                      .++++++++++|.+  +.+++++|++++.++ +++ .++||+|+++++.|+++...+...++..|.+++.++.+    |+
T Consensus       115 ~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~  194 (447)
T PRK00451        115 FEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDL  194 (447)
T ss_pred             HHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCH
Confidence            33446779999987  345666667887644 454 47999999999999999877766666789999998875    88


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEE--eCCCCCCCccCCCCCCccEEEeccccc-----c
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV--DNSIMSPVLSRPLELGADIVMHSATKF-----I  202 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~--D~a~~~~~~~~~~~~~~di~~~S~sK~-----~  202 (386)
                      +++++.+++++++|++++| |+||.+.|+++|.++|+++|+++++  |.. +.+.+..+.+.++|++++|.+|+     +
T Consensus       195 ~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~~~~~~D~~~~s~~k~~~~~~~  272 (447)
T PRK00451        195 EALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPPGEYGADIVVGEGQPLGIPLSF  272 (447)
T ss_pred             HHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCcccCCCCEEEECCCcCCCCCCC
Confidence            9999999999999999999 8899999999999999999999998  544 44555455677999999987775     4


Q ss_pred             ccCCCceEEEEEEcCh
Q 016612          203 AGHSDVMAGVLAVKGE  218 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~  218 (386)
                      +||   ++|+++++++
T Consensus       273 ~Gp---g~G~l~~~~~  285 (447)
T PRK00451        273 GGP---YLGFFATRKK  285 (447)
T ss_pred             CCC---CchHHHhhHH
Confidence            444   4899988754

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.84  E-value=1.7e-19  Score=169.11  Aligned_cols=315  Identities=16%  Similarity=0.146  Sum_probs=191.6

Q ss_pred             eeeccCCCCC---CCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHH
Q 016612           12 LLMNFSNEFD---PYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (386)
Q Consensus        12 ~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~   87 (386)
                      +.+++. ++.   ++|..+|.+.++......+    ... .+.. ..+++.++.+.+.+..+.+..++++||++|+.+++
T Consensus        30 ~~lD~~-s~~~~~~lG~~~p~v~~a~~~~~~~----~~~-~~~~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~  103 (377)
T PRK02936         30 TYLDFT-SGIAVCNLGHCHPTVTKAVQEQLDD----IWH-VSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAAL  103 (377)
T ss_pred             EEEECC-cchhhccCCCCCHHHHHHHHHHHHh----ccc-cccccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHH
Confidence            567776 444   7998777766542222111    111 1222 34578888888888877778888999999986444


Q ss_pred             Hh---cCCCCEEEecCCCCCcHHHHHhhhcccC---------CcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccc
Q 016612           88 HL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (386)
Q Consensus        88 ~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~~---------g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~  155 (386)
                      .+   ...++.|++.++.|++............         ...+..++..|++++++.+++++++|+++++++++|..
T Consensus       104 ~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~  183 (377)
T PRK02936        104 KLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVI  183 (377)
T ss_pred             HHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCc
Confidence            43   2334678888887765432211111110         01334566678999999998889999999999988877


Q ss_pred             cc----HHHHHHHHHHcCCEEEEeCCCCC-CCccCC-----CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHH
Q 016612          156 CD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (386)
Q Consensus       156 ~~----l~~i~~la~~~~~~li~D~a~~~-~~~~~~-----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~  225 (386)
                      .+    +++|.++|++||+++|+||+|.. +.....     .....|++  ++||.++  +|+++|+++++ +++.+.+.
T Consensus       184 ~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~--~G~~ig~v~~~-~~~~~~~~  258 (377)
T PRK02936        184 PADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG--NGIPVGAMIGK-KELGTAFG  258 (377)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc--CCCccEEEEEc-HHHHhhcc
Confidence            43    99999999999999999999852 111111     12234654  6899995  46899999986 55655443


Q ss_pred             HhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEE
Q 016612          226 FLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  303 (386)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~  303 (386)
                      ........+.++..++++...++.+.  ...++..++.+.+.+.+++..       +++   +..    ...++.|.+++
T Consensus       259 ~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~-------~~~---~~~----~~v~~~g~~~~  324 (377)
T PRK02936        259 PGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEEL-------EHL---ECV----KNIRGKGLMIG  324 (377)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-------hhC---CcE----EeEeecceEEE
Confidence            32222223456666666666554431  233444455555555555421       011   110    01123567888


Q ss_pred             EEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHH
Q 016612          304 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDK  379 (386)
Q Consensus       304 ~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~  379 (386)
                      +.+.+.  ...+.+.+...|+.+.++                           +.+++|+++..    +++++.++.|++
T Consensus       325 i~~~~~--~~~~~~~l~~~gv~v~~~---------------------------g~~~lRi~p~~~~~~~~i~~~i~~l~~  375 (377)
T PRK02936        325 IECTEE--VAPVIEQLREEGLLVLSA---------------------------GPNVIRLLPPLVVTKEELDQAVYLLKK  375 (377)
T ss_pred             EEecch--HHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence            888543  556777777777754332                           13569999743    566666666655


Q ss_pred             H
Q 016612          380 A  380 (386)
Q Consensus       380 ~  380 (386)
                      +
T Consensus       376 ~  376 (377)
T PRK02936        376 V  376 (377)
T ss_pred             h
Confidence            4

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.84  E-value=3.2e-19  Score=171.20  Aligned_cols=161  Identities=24%  Similarity=0.343  Sum_probs=126.0

Q ss_pred             CCc-hHHHHHHHHHhhcCCCceEEe-CcHHHH-HHHH--H--HhcCCCC----EEEecCCCCCcHHHHHhhhcccCCcEE
Q 016612           53 GNP-TRDALESLLAKLDKADRALCF-TSGMAA-LAAV--T--HLLGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (386)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~~~i~~-~~gt~a-l~~~--~--~~~~~g~----~Vlv~~~~~~~~~~~~~~~~~~~g~~~  121 (386)
                      |.. ++.++++++++++|.++..+. ++|+.+ +..+  .  .++++||    +|+++++.|+++..    .++..|+++
T Consensus       110 G~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~----~~~~~G~~v  185 (481)
T PRK04366        110 GALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPA----SAAMAGFKV  185 (481)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHH----HHHHcCCEE
Confidence            554 789999999999999854444 566544 3322  2  2356776    99999999998863    456789999


Q ss_pred             EEeCCC-----CHHHHHhhhCCCceEEEEeCCCCCCccc-ccHHHHHHHHHHcCCEEEEeCCCCCCCc--cCCCCCCccE
Q 016612          122 KRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADI  193 (386)
Q Consensus       122 ~~v~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~-~~l~~i~~la~~~~~~li~D~a~~~~~~--~~~~~~~~di  193 (386)
                      +.++.+     |++++++.+++++++|++++|+ ++|.+ .|+++|+++|+++|+++++|+++..+..  .++.+.|+|+
T Consensus       186 v~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~  264 (481)
T PRK04366        186 VEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDV  264 (481)
T ss_pred             EEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCE
Confidence            988763     8899999999899999999988 89987 4899999999999999999999874422  2566789999


Q ss_pred             EEeccccccccCCC---ceEEEEEEcCh
Q 016612          194 VMHSATKFIAGHSD---VMAGVLAVKGE  218 (386)
Q Consensus       194 ~~~S~sK~~~g~~g---~~~G~i~~~~~  218 (386)
                      +++|+||++++|.|   .-+|+++++++
T Consensus       265 ~~~~~hK~l~~P~g~Ggp~~G~l~~~~~  292 (481)
T PRK04366        265 VHLNLHKTFSTPHGGGGPGSGPVGVKEE  292 (481)
T ss_pred             EEEechhhcCCCCCCCCCCeeeeeehhh
Confidence            99999999975532   22688888754

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.84  E-value=3.9e-19  Score=167.30  Aligned_cols=321  Identities=17%  Similarity=0.185  Sum_probs=194.9

Q ss_pred             ceeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccC-CCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHH
Q 016612           11 TLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (386)
Q Consensus        11 ~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~   87 (386)
                      .+.+++..+  +.++|..+|.+.++........     ...+. ...+...++++.|+++.+.+...+++||++|+.+.+
T Consensus        35 ~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Al  109 (397)
T TIGR03246        35 KEYIDFAGGIAVNALGHAHPELVKALIEQADKL-----WHIGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAAL  109 (397)
T ss_pred             CEEEECCcCHhhccCCCCCHHHHHHHHHHHHhc-----ccccCccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHH
Confidence            356666533  7889998877766432221110     01111 134578899999999988888999999999986443


Q ss_pred             Hhc---------CCCCEEEecCCCCCcH-HHHHhhhcc---------cCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCC
Q 016612           88 HLL---------GTGEEIVAGDDLYGGT-DRLLSRVTP---------KTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP  148 (386)
Q Consensus        88 ~~~---------~~g~~Vlv~~~~~~~~-~~~~~~~~~---------~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~  148 (386)
                      .+.         ...+.|+..+..|++. ...+ ....         .....+..++..|++++++.+.+++++|+++.+
T Consensus       110 k~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epi  188 (397)
T TIGR03246       110 KLARRYALDKHGADKSEIVAFKNSFHGRTLFTV-SVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISDKTCAVIVEPI  188 (397)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcCCccHHHH-HhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhccCeEEEEEecc
Confidence            322         1235667666666554 3222 1111         011234567778999999999888999999988


Q ss_pred             CCCCcccc----cHHHHHHHHHHcCCEEEEeCCCCC----CCccC--CCCCCccEEEeccccccccCCCceEEEEEEcCh
Q 016612          149 TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS----PVLSR--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       149 ~nptG~~~----~l~~i~~la~~~~~~li~D~a~~~----~~~~~--~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      +++.|.+.    .+++|.++|++||+++|+||++..    |....  ......|++  +++|.++  +|+++|+++++ +
T Consensus       189 ~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lg--gG~pigav~~~-~  263 (397)
T TIGR03246       189 QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL--TSAKALG--GGFPIGAMLTT-T  263 (397)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEE--Eeehhhh--CCcceeEEEEc-H
Confidence            88777664    289999999999999999999831    11111  112346766  6799995  36889999987 4


Q ss_pred             hHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccC
Q 016612          219 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  296 (386)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~  296 (386)
                      ++.+.+.........+.++..+.+++..++.+.  ...++..+..+.+.+.|++...          .++    ...+.+
T Consensus       264 ~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~----------~~~----~~~~vr  329 (397)
T TIGR03246       264 EIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINA----------RYN----VFSEIR  329 (397)
T ss_pred             HHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh----------cCC----CeEeee
Confidence            565555322222222345555555544443321  1233334444444444443210          000    011224


Q ss_pred             CCCceEEEEeCC--HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCCh
Q 016612          297 GAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDV  370 (386)
Q Consensus       297 ~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~  370 (386)
                      +.|.++.+.+.+  ......+.+.+...|+.+.+.                           +++++|++++    .+++
T Consensus       330 g~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~---------------------------g~~~lR~~p~~~~t~~~i  382 (397)
T TIGR03246       330 GKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA---------------------------GPNVVRFAPSLVISDDDI  382 (397)
T ss_pred             cCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeec---------------------------CCCEEEEeCCCCCCHHHH
Confidence            567788877743  234667777777777754321                           1345999764    4788


Q ss_pred             HHHHHHHHHHHhc
Q 016612          371 NDLISDLDKALRT  383 (386)
Q Consensus       371 ~~~i~~l~~~l~~  383 (386)
                      ++.++.|.+++++
T Consensus       383 ~~~~~~l~~~l~~  395 (397)
T TIGR03246       383 DEGLARFERAIEQ  395 (397)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888888765

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.84  E-value=3.3e-20  Score=156.51  Aligned_cols=325  Identities=20%  Similarity=0.235  Sum_probs=210.0

Q ss_pred             CCccceeeccCCCCCCCCCcccceeeeeeeecCCCCCCC--CccccCC--CCc-hHHHHHHHHHhhcCCCceEEeCcHHH
Q 016612            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG--PYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMA   81 (386)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~   81 (386)
                      .+.+..++|++ .|+|+|..+-|..-....   .+..+.  +....+.  |.. ..+.+|..++++.+.++.++..+|..
T Consensus        63 ~G~~k~ilnFc-aNnYLGLsshPeii~a~~---~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfd  138 (417)
T KOG1359|consen   63 KGSDKKILNFC-ANNYLGLSSHPEIINAGQ---KALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFD  138 (417)
T ss_pred             eccccceeeec-ccccccccCChHHHHHHH---HHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccc
Confidence            35678899999 999999988775432111   111111  2222333  665 78999999999999999999999997


Q ss_pred             HHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHH-HHHhhhCCCceEEEEeCCCCCCcccccHH
Q 016612           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD-EVASAIGPWTKLVWVESPTNPRQQICDIR  159 (386)
Q Consensus        82 al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~-~l~~~~~~~~~~v~~~~~~nptG~~~~l~  159 (386)
                      |.. ++.++++|.|.|+..+..|.+...-+ +++++++    +++.-|++ .+.+..+.+-++|+.+..-.+.|.+.|++
T Consensus       139 ANag~feail~pedAvfSDeLNhASIIdGi-rLckry~----h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~  213 (417)
T KOG1359|consen  139 ANAGAFEAILTPEDAVFSDELNHASIIDGI-RLCKRYR----HVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLE  213 (417)
T ss_pred             cchHHHHHhcChhhhhhccccccchhhhhh-HHHhhhc----cchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHH
Confidence            754 66778999999998888887776554 4454332    33333332 22233445788999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCCCCCCccCCC---------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh-
Q 016612          160 KIAEMAHAHGALLLVDNSIMSPVLSRPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-  229 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a~~~~~~~~~~---------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~-  229 (386)
                      +|.+++++||.++++||+|+++.+....         .-+.|++.++++|.++|..   +|+..++.+ +.+.++...+ 
T Consensus       214 ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~---GGyttgp~~-li~llrqr~Rp  289 (417)
T KOG1359|consen  214 EISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGAS---GGYTTGPKP-LISLLRQRSRP  289 (417)
T ss_pred             HHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCC---CCCccCChh-HHHHHHhcCCc
Confidence            9999999999999999999987764211         1246899999999997655   699998754 5444433222 


Q ss_pred             -hcCCCCChhhHHHHHhcCC---cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE
Q 016612          230 -AEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  305 (386)
Q Consensus       230 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~  305 (386)
                       .+...+++........++.   .-...+...+.+.+++.++.+...    +...+               ...++..+.
T Consensus       290 ylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aG----ftIsg---------------~~hPI~pv~  350 (417)
T KOG1359|consen  290 YLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAG----FTISG---------------ASHPICPVM  350 (417)
T ss_pred             eeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----ceecC---------------CCCCcccee
Confidence             2334444432222222211   112333444566666666665432    11111               123667777


Q ss_pred             eCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 016612          306 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  381 (386)
Q Consensus       306 ~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  381 (386)
                      +.+...+.++.+++...|+.+-.      +++|..              +.+.-.||+.++.    ++++++|+++.++.
T Consensus       351 lGda~lA~~~ad~lLk~Gi~Vig------fs~PvV--------------P~gkariRVqiSAaHt~edid~~i~Af~~vg  410 (417)
T KOG1359|consen  351 LGDARLASKMADELLKRGIYVIG------FSYPVV--------------PKGKARIRVQISAAHTEEDIDRLIEAFSEVG  410 (417)
T ss_pred             cccHHHHHHHHHHHHhcCceEEe------ecCCcC--------------CCCceEEEEEEehhcCHHHHHHHHHHHHHHH
Confidence            88888888999999888886432      222311              1123458888875    56666666666555


Q ss_pred             hc
Q 016612          382 RT  383 (386)
Q Consensus       382 ~~  383 (386)
                      +.
T Consensus       411 r~  412 (417)
T KOG1359|consen  411 RF  412 (417)
T ss_pred             Hh
Confidence            43

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.84  E-value=5.1e-20  Score=166.37  Aligned_cols=156  Identities=22%  Similarity=0.281  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-------
Q 016612           56 TRDALESLLAKLDKADRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------  126 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------  126 (386)
                      ..+++++.+++++|.++.+++++| ++++. ++.+++++||+|++++++|.+....+    ...|+++++++.       
T Consensus        60 ~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~----~~~g~~~~~v~~~~~~~~~  135 (294)
T cd00615          60 PIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGL----VLSGAVPVYLKPERNPYYG  135 (294)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHH----HHCCCEEEEecCccCcccC
Confidence            689999999999999877764555 57775 56778999999999999998886443    356777777653       


Q ss_pred             ----CCHHHHHhhhC--CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC-----cc-CCCCCCccEE
Q 016612          127 ----CDLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS-RPLELGADIV  194 (386)
Q Consensus       127 ----~d~~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~-----~~-~~~~~~~di~  194 (386)
                          .|++++++.++  ++++++++++| |++|.+.|+++|.++|+++|+++++|++|+...     .+ +....++|++
T Consensus       136 ~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div  214 (294)
T cd00615         136 IAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIV  214 (294)
T ss_pred             cCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEE
Confidence                27899999885  47899999998 689999999999999999999999999987421     11 2234589999


Q ss_pred             EeccccccccCCCceEEEEEEcCh
Q 016612          195 MHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       195 ~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      +.|+||+++|+.+  +|++..+++
T Consensus       215 ~~S~hK~l~g~~~--~~~l~~~~~  236 (294)
T cd00615         215 VQSTHKTLPALTQ--GSMIHVKGD  236 (294)
T ss_pred             EEchhcccchHhH--HHHHHhCCC
Confidence            9999999876543  566666543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.84  E-value=1.9e-19  Score=170.08  Aligned_cols=320  Identities=17%  Similarity=0.208  Sum_probs=190.6

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~   88 (386)
                      +.+++..+  +.++|..+|.+.++......   +.  ..++.. ..+...++++.++++.+.+..++++||++|+.+++.
T Consensus        41 ~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~---~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~k  115 (403)
T PRK05093         41 EYIDFAGGIAVTALGHCHPALVKALKEQGE---KL--WHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAFK  115 (403)
T ss_pred             EEEEcCcCHHhccCCCCCHHHHHHHHHHHH---hc--CcccCccCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHH
Confidence            45666523  67899977776653221111   10  111111 345567899999998877889999999988764433


Q ss_pred             hc---------CCCCEEEecCCCCCcH-HHHHh--------hhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCC
Q 016612           89 LL---------GTGEEIVAGDDLYGGT-DRLLS--------RVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (386)
Q Consensus        89 ~~---------~~g~~Vlv~~~~~~~~-~~~~~--------~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~n  150 (386)
                      +.         ...+.|+..+..|++. ...+.        .........+..++..|++++++.+.+++++|+++ |.|
T Consensus       116 lar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaiiie-p~~  194 (403)
T PRK05093        116 LARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDDHTCAVVVE-PIQ  194 (403)
T ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHhcCCeEEEEEe-ccc
Confidence            22         1234577666666554 32211        00111223466777789999999998889999999 555


Q ss_pred             CCcccc-c----HHHHHHHHHHcCCEEEEeCCCCC-CCccCC-----CCCCccEEEeccccccccCCCceEEEEEEcChh
Q 016612          151 PRQQIC-D----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       151 ptG~~~-~----l~~i~~la~~~~~~li~D~a~~~-~~~~~~-----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      ++|.+. +    +++|.++|++||+++|+||+|+. +.....     .....|+  .|+||.++  +|+|+|+++++ +.
T Consensus       195 ~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~s~sK~l~--~G~rig~vv~~-~~  269 (403)
T PRK05093        195 GEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDI--LTSAKALG--GGFPIGAMLTT-AE  269 (403)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCE--EEeccccc--CCcceEEEEEc-HH
Confidence            565553 3    89999999999999999999872 111111     1223554  57899996  47899999997 44


Q ss_pred             HHHHHHHhhhhcCCCCChhhHHHHHhcCCcH--HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCC
Q 016612          220 LAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  297 (386)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~  297 (386)
                      +.+.+.........+.++..++++...++.+  ....+...++.+.+.+.|++...       ..      .+ ....++
T Consensus       270 i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------~~------~~-~~~~~~  335 (403)
T PRK05093        270 IASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQ-------KY------GV-FSEIRG  335 (403)
T ss_pred             HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh-------hC------CC-eEeEee
Confidence            5554433222223345566665555544322  12233444455555555554310       00      00 012244


Q ss_pred             CCceEEEEeCCH--HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChH
Q 016612          298 AGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVN  371 (386)
Q Consensus       298 ~~~~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~  371 (386)
                      .|.++++.++..  ....++.+.+...|+.+.++                           +.+++|++++.    ++++
T Consensus       336 ~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~---------------------------g~~~lRl~~~~~~~~~~i~  388 (403)
T PRK05093        336 MGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVA---------------------------GPDVLRFAPSLVIEEADID  388 (403)
T ss_pred             CceEEEEEecCcchhHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEeCCCCCCHHHHH
Confidence            577788887432  24567777777777765431                           13569998653    6777


Q ss_pred             HHHHHHHHHHhc
Q 016612          372 DLISDLDKALRT  383 (386)
Q Consensus       372 ~~i~~l~~~l~~  383 (386)
                      +.++.|.+++++
T Consensus       389 ~~~~~l~~~l~~  400 (403)
T PRK05093        389 EGLARFEKAVAK  400 (403)
T ss_pred             HHHHHHHHHHHH
Confidence            778888777754

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.83  E-value=1.7e-18  Score=161.90  Aligned_cols=283  Identities=18%  Similarity=0.147  Sum_probs=181.4

Q ss_pred             HHHHHHhhcCCC-ceEEeCcHHHHH-HHHHHhcCC-------------------------------CCEEEecCCCCCcH
Q 016612           60 LESLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGT-------------------------------GEEIVAGDDLYGGT  106 (386)
Q Consensus        60 l~~~l~~~~g~~-~~i~~~~gt~al-~~~~~~~~~-------------------------------g~~Vlv~~~~~~~~  106 (386)
                      ..+++.++||.+ ..+-.-||+.|. .+..++++|                               ||+|+..++.++++
T Consensus       100 ~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGH  179 (493)
T PRK13580        100 AAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGH  179 (493)
T ss_pred             HHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCe
Confidence            456677889998 455667888775 466778876                               79999877766554


Q ss_pred             HHHHhhhcccCC--cEEEEeCC------CCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCC
Q 016612          107 DRLLSRVTPKTG--VVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       107 ~~~~~~~~~~~g--~~~~~v~~------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~  178 (386)
                      ..+- ......+  .+...++.      .|.+++++.+.++++.|++++.+|. +...|+++|.++|+++|+++++|++|
T Consensus       180 lthg-~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH  257 (493)
T PRK13580        180 LTHG-FRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAH  257 (493)
T ss_pred             eecC-cccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECch
Confidence            2110 0001111  22222222      3899999999999999999999997 55889999999999999999999999


Q ss_pred             CCCCcc--------CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh-hhcCCCCChhhHHHHHhc---
Q 016612          179 MSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWICLRG---  246 (386)
Q Consensus       179 ~~~~~~--------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---  246 (386)
                      +.|++.        .+. .++|++++|+||++.||.   +|++++++ .+.+.+.... ...+...++..++.+...   
T Consensus       258 ~~Gligg~~~~~~~~~~-~~~D~vtgT~hKaL~GP~---GG~I~~~~-~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~  332 (493)
T PRK13580        258 FAGLVAGKVFTGDEDPV-PHADIVTTTTHKTLRGPR---GGLVLAKK-EYADAVDKGCPLVLGGPLPHVMAAKAVALAEA  332 (493)
T ss_pred             hhceeccccchhhcCCC-CCCcEEEeCChhhccCCC---eEEEEecH-HHHHHHhhCCCcccCCCccHHHHHHHHHHHHH
Confidence            987754        122 368999999999997765   69999874 4555443222 223344444333222221   


Q ss_pred             C-CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHh-HHHHHhhcCccee
Q 016612          247 V-KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL-SKHVVETTKYFSI  324 (386)
Q Consensus       247 ~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~gi  324 (386)
                      . .....+.++..+|++.+.+.|.+..         ++-..+        ...++++.+.+.+... ...+.+.|...||
T Consensus       333 ~~~ef~~y~~~l~~Na~~La~~L~~~G---------~~vv~g--------gTdshIV~V~lg~~~~~g~~a~~~L~e~GI  395 (493)
T PRK13580        333 RTPEFQKYAQQVVDNARALAEGFLKRG---------ARLVTG--------GTDNHLVLIDVTSFGLTGRQAESALLDAGI  395 (493)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHhcC---------CCccCC--------CCCCCEEEEEeCCHHHHHHHHHHHHHHCCe
Confidence            1 1224467888899999999888753         111100        1245888998866543 3356667777777


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--------CChHHHHHHHHHHHhc
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------EDVNDLISDLDKALRT  383 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--------~~~~~~i~~l~~~l~~  383 (386)
                      .++.      +.+|.....           ......|||++..        ++++++++.|.++++.
T Consensus       396 ~vn~------i~~Ptvp~g-----------~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~  445 (493)
T PRK13580        396 VTNR------NSIPSDPNG-----------AWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN  445 (493)
T ss_pred             EEcc------ccCCCCCCC-----------CCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence            6543      222321100           0124569999753        6778888888777753

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.83  E-value=2.3e-19  Score=169.67  Aligned_cols=288  Identities=16%  Similarity=0.179  Sum_probs=175.4

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhc-----------CCCCEEEecCCCCCcHHHHHhhhccc------
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL-----------GTGEEIVAGDDLYGGTDRLLSRVTPK------  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~-----------~~g~~Vlv~~~~~~~~~~~~~~~~~~------  116 (386)
                      .+..+.+++.++++.+.+..++++||++|+.+.+.+.           ..+++|++.+..|++...........      
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~  151 (400)
T PTZ00125         72 NDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNN  151 (400)
T ss_pred             CHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhcc
Confidence            3577889999999888888999999999876443322           13467887777776653221111110      


Q ss_pred             ---CCcEEEEeCCCCHHHHHhhhC-CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc---
Q 016612          117 ---TGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---  184 (386)
Q Consensus       117 ---~g~~~~~v~~~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~---  184 (386)
                         ....+..++..|++++++.+. +++++|++++++||+|.+.+    +++|.++|++||+++|+||+++ .+...   
T Consensus       152 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~  231 (400)
T PTZ00125        152 FGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL  231 (400)
T ss_pred             CCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh
Confidence               001234455669999999986 78999999999999999987    9999999999999999999985 22111   


Q ss_pred             --CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHH
Q 016612          185 --RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQ  262 (386)
Q Consensus       185 --~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (386)
                        .......|+++  ++|++++ ++.++|++++++ ++.+.+.........+.++..+.++...++.+..  +...++.+
T Consensus       232 ~~~~~~~~pd~~~--~sK~l~~-g~~~ig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~--~~~~~~~~  305 (400)
T PTZ00125        232 AHDHEGVKPDIVL--LGKALSG-GLYPISAVLAND-DVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKE--EKLAENAQ  305 (400)
T ss_pred             HHHhcCCCCCEEE--EcccccC-CCcCcEEEEEcH-HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHH
Confidence              11123457765  5799964 334789999874 4555443322222234455555555444433211  11222333


Q ss_pred             HHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       263 ~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      .+.+++.+.-  ...    +...+..    ...++.|.++++.++.  ......+.+.+...|+.+.++.          
T Consensus       306 ~~~~~l~~~l--~~l----~~~~~~~----~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------  365 (400)
T PTZ00125        306 RLGEVFRDGL--KEL----LKKSPWV----KEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPTH----------  365 (400)
T ss_pred             HHHHHHHHHH--HHH----HhcCCCe----EEEecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeecC----------
Confidence            3333322210  000    0111100    0113456778887743  3345667777777777654321          


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                                       .++|||++.    .++++++++.|.+++++.
T Consensus       366 -----------------~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~  396 (400)
T PTZ00125        366 -----------------DNIIRFAPPLVITKEQLDQALEIIKKVLKSF  396 (400)
T ss_pred             -----------------CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence                             346999964    478888899998888764

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.83  E-value=7.5e-19  Score=167.86  Aligned_cols=153  Identities=20%  Similarity=0.161  Sum_probs=111.6

Q ss_pred             HHHHHHhhcCCC-ceE-Ee---CcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcc------cCCcEEEEeCCC
Q 016612           60 LESLLAKLDKAD-RAL-CF---TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTP------KTGVVVKRVNTC  127 (386)
Q Consensus        60 l~~~l~~~~g~~-~~i-~~---~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~------~~g~~~~~v~~~  127 (386)
                      .++.+++++|.+ +.+ +.   +||+++..+ +.+++++||+|++.+..|+++...+....+      ..+.++..++.+
T Consensus        85 ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~  164 (452)
T PTZ00094         85 CQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN  164 (452)
T ss_pred             HHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC
Confidence            456888999987 333 33   578888764 777899999999999899887543321111      111333343332


Q ss_pred             -----CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCCCccEEEe
Q 016612          128 -----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMH  196 (386)
Q Consensus       128 -----d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~di~~~  196 (386)
                           |++++++.++ .+++++++.  ++.+|...|+++|.++|+++|+++++|++|+.|.+.     .+.. ++|++++
T Consensus       165 ~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-~~D~l~~  241 (452)
T PTZ00094        165 EKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-YADVVTT  241 (452)
T ss_pred             CCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-CCcEEEc
Confidence                 8999999985 367777764  234899999999999999999999999999988763     2322 7999999


Q ss_pred             ccccccccCCCceEEEEEEcCh
Q 016612          197 SATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       197 S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      |+|||+.||.   +|+++++++
T Consensus       242 S~hK~l~GP~---Gg~l~~~~~  260 (452)
T PTZ00094        242 TTHKSLRGPR---SGLIFYRKK  260 (452)
T ss_pred             CCccCCCCCC---ceEEEEecc
Confidence            9999998876   477777643

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.83  E-value=1.1e-18  Score=147.78  Aligned_cols=298  Identities=19%  Similarity=0.259  Sum_probs=182.8

Q ss_pred             cccCC-CC-chHHHHHHHHHhhcCCC---ceEEeCcHH-HHHHHHHHh----cCCCC--EEE-ecCCCCCcHHHHHhhhc
Q 016612           48 DYTRS-GN-PTRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHL----LGTGE--EIV-AGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        48 ~y~~~-g~-~~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~~~~~~----~~~g~--~Vl-v~~~~~~~~~~~~~~~~  114 (386)
                      .|+-+ |. ++.+++.+.+.+-+|..   +.|..|+|+ .+..-+..+    ...|+  .|+ --.|.|-+|..+    .
T Consensus        69 nY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~----~  144 (417)
T COG3977          69 NYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADA----G  144 (417)
T ss_pred             cCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccccc----c
Confidence            45544 76 48999999999999875   678888887 554333332    23343  344 456888777422    1


Q ss_pred             ccCCcEEEEeCC-------------CCHHHHHhhhCCCceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCC
Q 016612          115 PKTGVVVKRVNT-------------CDLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       115 ~~~g~~~~~v~~-------------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~  178 (386)
                      ..- --++.+.+             .|.+++.  +.+++.+|+++-|.||||.+.   .+.+|-++|++||+++++|.+|
T Consensus       145 l~~-d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAY  221 (417)
T COG3977         145 LEE-DLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAY  221 (417)
T ss_pred             cCc-cceeeccCCcccccccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEeccc
Confidence            111 11122111             1555544  457899999999999999997   4889999999999999999999


Q ss_pred             CCCCcc----C--CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---
Q 016612          179 MSPVLS----R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---  249 (386)
Q Consensus       179 ~~~~~~----~--~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  249 (386)
                      +.+...    +  +.-.++.+.|+|+||.  |.+|.|+|+++.+ +++.+.+...............++.+.+.++.   
T Consensus       222 g~PFP~iifsd~~~~w~~NiilC~SLSK~--GLPG~R~GIiIan-e~viqaitnmn~iisLap~~~G~Aia~~mie~gdl  298 (417)
T COG3977         222 GVPFPGIIFSDATPLWNENIILCMSLSKL--GLPGSRCGIIIAN-EKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDL  298 (417)
T ss_pred             CCCCCceecccccccCCCCEEEEeehhhc--CCCCcceeEEEcc-HHHHHHHHhccceeeecCCCccHHHHHHHhhcchH
Confidence            976532    1  2223678999999996  6778999999986 55666555544322222222223332222211   


Q ss_pred             --HH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe--CCHHhHHHHHhhcCcce
Q 016612          250 --MA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT--GSLALSKHVVETTKYFS  323 (386)
Q Consensus       250 --~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~g  323 (386)
                        +.  ..+.-+.+..+.....+++.          +++.+ +.+.    ++.|.+|.|-.  +-+...+.++++++..|
T Consensus       299 ~rlseqVIrPFY~~~~q~~~~~l~~~----------lp~~~-~~iH----kpEGAIFlWLWf~dLPItt~~LYq~LKa~G  363 (417)
T COG3977         299 LRLSEQVIRPFYRNRVQTTIAILRRY----------LPEYR-CLIH----KPEGAIFLWLWFKDLPITTEELYQRLKARG  363 (417)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHh----------cCccc-eeee----cCCcceeehhhhccCCCCHHHHHHHHHhCe
Confidence              11  01112223333333444331          11111 1111    34677777764  44667889999999999


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHhcC
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~~~  384 (386)
                      +.+-+|+.+    +|..      +.+|.+    ...++|+|..  .+.++.-++.|.+.++++
T Consensus       364 vl~VPG~~F----FpGl------~~ewpH----~hqC~Rmn~~~~~~~ie~Gva~lae~ve~~  412 (417)
T COG3977         364 VLMVPGHYF----FPGL------DKEWPH----THQCMRMNYVPEPEKIEKGVAILAEEVERA  412 (417)
T ss_pred             EEEeccccc----CCCC------CCCCCC----ccceEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence            998888752    2321      111111    1367999985  588888999998888763

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.82  E-value=9.4e-19  Score=165.20  Aligned_cols=321  Identities=16%  Similarity=0.181  Sum_probs=193.7

Q ss_pred             eeeccCC--CCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh
Q 016612           12 LLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL   89 (386)
Q Consensus        12 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~   89 (386)
                      +.+++..  ++.++|..+|++.++........... .   ....++...++++.++++.+.+..++++||++|+...+.+
T Consensus        40 ~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~---~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~  115 (406)
T PRK12381         40 EYIDFAGGIAVNALGHAHPALREALNEQASKFWHT-G---NGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKL  115 (406)
T ss_pred             EEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccc-c---CccCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHH
Confidence            4556542  36789998888776433222111000 1   1113456778999999988878899999999998644332


Q ss_pred             c---------CCCCEEEecCCCCCcHHHHHhhhcccC---------CcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCC
Q 016612           90 L---------GTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (386)
Q Consensus        90 ~---------~~g~~Vlv~~~~~~~~~~~~~~~~~~~---------g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~np  151 (386)
                      .         ..+..|+..+..|++.......+....         -..+..++..|++++++.+++++++|+++ |.++
T Consensus       116 ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaviiE-Pv~~  194 (406)
T PRK12381        116 ARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIVE-PIQG  194 (406)
T ss_pred             HHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEEe-CCcC
Confidence            1         245678888888877642211111100         01245566679999999998889999987 5677


Q ss_pred             Ccccc-----cHHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChhH
Q 016612          152 RQQIC-----DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       152 tG~~~-----~l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      +|.+.     .+++|.++|++||+++|+||++.. +....     ......|+  .|++|.++  +|+++|+++++ +++
T Consensus       195 ~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~--gG~~ig~~~~~-~~~  269 (406)
T PRK12381        195 EGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDV--LTTAKALG--GGFPIGAMLTT-EKC  269 (406)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCE--EEehhhhh--CCCceEEEEEc-HHH
Confidence            77653     389999999999999999999842 21111     11224565  47899995  36899999987 456


Q ss_pred             HHHHHHhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC
Q 016612          221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  298 (386)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~  298 (386)
                      .+.+.........+.++..+.++...++.+.  ...++..+..+.+.+.|++...       .   .+    .....++.
T Consensus       270 ~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~-------~---~~----~~~~vrg~  335 (406)
T PRK12381        270 ASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINA-------R---YG----LFSEIRGL  335 (406)
T ss_pred             HhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh-------h---CC----CEEEEecC
Confidence            5544332222223445656555555443321  1223333444444444443210       0   00    01123456


Q ss_pred             CceEEEEeCCH--HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHH
Q 016612          299 GSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVND  372 (386)
Q Consensus       299 ~~~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~  372 (386)
                      |.++++.+...  .....+.+.+..+|+.+...                           +++.+|++++.    +++++
T Consensus       336 Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~---------------------------g~~~lRl~p~~~~t~~~i~~  388 (406)
T PRK12381        336 GLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA---------------------------GPNVVRFAPALNISEEEITT  388 (406)
T ss_pred             eEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC---------------------------CCCEEEEeCCccCCHHHHHH
Confidence            78888887542  24567777787778765321                           13459998763    77777


Q ss_pred             HHHHHHHHHhc
Q 016612          373 LISDLDKALRT  383 (386)
Q Consensus       373 ~i~~l~~~l~~  383 (386)
                      .++.|.+++++
T Consensus       389 ~~~~l~~~l~~  399 (406)
T PRK12381        389 GLDRFARACER  399 (406)
T ss_pred             HHHHHHHHHHH
Confidence            88888887765

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.82  E-value=9.9e-19  Score=163.37  Aligned_cols=152  Identities=13%  Similarity=0.090  Sum_probs=113.2

Q ss_pred             chHHHHHHHHHhhcCCC---ceEEeC-cHHHHHHH-HHHhcCC-CCEEEecCCCCCcHHHHHhh-hcccCCc-EEEEeCC
Q 016612           55 PTRDALESLLAKLDKAD---RALCFT-SGMAALAA-VTHLLGT-GEEIVAGDDLYGGTDRLLSR-VTPKTGV-VVKRVNT  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~---~~i~~~-~gt~al~~-~~~~~~~-g~~Vlv~~~~~~~~~~~~~~-~~~~~g~-~~~~v~~  126 (386)
                      ...+++++.++++++.+   +.++++ |||.++++ +..++++ ++.|++ ...|++.   |.. +.+..|+ +++.++.
T Consensus        48 ~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~---~~~~~~~~~g~~~v~~~~~  123 (378)
T PRK03080         48 ALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSK---WATDVVKQLKLEDPRVLEA  123 (378)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHH---HHHHHHhhcCCCCceEecc
Confidence            36888999999999963   355564 77899985 4556764 444444 4556543   223 3456787 7777764


Q ss_pred             C-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccc
Q 016612          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (386)
Q Consensus       127 ~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~  201 (386)
                      +     |+++    ++. +++|.+++.+|.||...|+++|.+  +++|+++++|.+++.|+.+-..+ +.|++++|.+||
T Consensus       124 ~~g~~~d~~~----i~~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~-~iD~~~~s~~K~  195 (378)
T PRK03080        124 DYGSLPDLSA----VDF-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWS-KLDVYTFSWQKV  195 (378)
T ss_pred             CCCCCCCHhh----cCC-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHH-HCcEEEEehhhh
Confidence            3     4444    332 667999999999999999999999  88999999999999988753333 379999999999


Q ss_pred             cccCCCceEEEEEEcChhH
Q 016612          202 IAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~  220 (386)
                      +++|+|  .|+++.+++.+
T Consensus       196 l~~P~G--~g~l~v~~~~~  212 (378)
T PRK03080        196 LGGEGG--HGMAILSPRAV  212 (378)
T ss_pred             CCCCCc--eEEEEECHHHH
Confidence            999898  79999986544

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.82  E-value=4.5e-18  Score=142.18  Aligned_cols=281  Identities=20%  Similarity=0.176  Sum_probs=192.9

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      |....+.+.+++++|.|..-++.+..++=.++ -+++++||.|++....|.++.    -++++.|+.+..+|..      
T Consensus        61 PpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg~Pey~  136 (382)
T COG1103          61 PPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTGYPEYK  136 (382)
T ss_pred             CcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCCCCceE
Confidence            55667777799999999777776666886654 558999999999999887775    5678999999999964      


Q ss_pred             -CHHHHHhhhC-------CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecc
Q 016612          128 -DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (386)
Q Consensus       128 -d~~~l~~~~~-------~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~  198 (386)
                       +++.+.+.++       +.+.+.+++++....|.+.|.++++++|+++|+++++..+|..|-.+ +..+.++|++++|.
T Consensus       137 i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSG  216 (382)
T COG1103         137 ITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSG  216 (382)
T ss_pred             ecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecC
Confidence             5666555553       34788999999999999999999999999999999999999988765 44567999999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHH-HHHhhh--------hcCCCCChhhHHHHHhcCCcHHHHHHHHHHH---HHHHHH
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKE-LYFLQN--------AEGSGLAPFDCWICLRGVKTMALRVEKQQDN---AQKIAE  266 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~  266 (386)
                      ||+++..+  .+|++..+. +..+. ++....        ..|+....+....+.+++-....|..++.+.   ++++..
T Consensus       217 HKsmAAs~--PiGvl~~~e-E~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~  293 (382)
T COG1103         217 HKSMAASA--PIGVLAMSE-EWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVA  293 (382)
T ss_pred             ccchhccC--CeeEEeehh-HHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99996543  389999874 44433 332211        2344444444555566676667777666654   444444


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--------CHHhHHHHHhhcCcceec-cCCCCccccccc
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSIT-VSFGSVKSLISM  337 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~-~~~G~~~~~~~~  337 (386)
                      .+++...+.+     |         ...|.. .-++.|..+        .......++++|+.+||. +.+|..      
T Consensus       294 elEkigg~~q-----l---------G~rPk~-HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~T------  352 (382)
T COG1103         294 ELEKIGGVKQ-----L---------GERPKN-HDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPGQT------  352 (382)
T ss_pred             HHHHhhhHHH-----h---------CCCCcc-cceeeecCchHHHHHHhCcCCceeeHHHHHhcCccccccCce------
Confidence            4444331111     1         111111 122333321        122234567788888875 444432      


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEe---ccCChHHHHHHHHHHHhcC
Q 016612          338 PCFMSHASIPVEVRQARGLTEDLVRISV---GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       338 p~~~~~~~~~~~~~~~~~~~~~~iRis~---~~~~~~~~i~~l~~~l~~~  384 (386)
                                           .+|.+|+   ++|.++..++.+++.+++.
T Consensus       353 ---------------------k~~K~svyGl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         353 ---------------------KYFKLSVYGLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             ---------------------eEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence                                 3488886   5799999999999988764

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.82  E-value=2.5e-19  Score=160.39  Aligned_cols=313  Identities=19%  Similarity=0.231  Sum_probs=201.8

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-CCceEEeCcHHHHHHHHHHh---cC--C-
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALAAVTHL---LG--T-   92 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~~~i~~~~gt~al~~~~~~---~~--~-   92 (386)
                      -..+|..+|.+.++-......+......+    -++...++.+.|.+..+ .+..++.+||++|+.+.+.+   ..  + 
T Consensus        53 v~~lGH~hP~iv~al~~Q~~kl~h~sn~~----~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~  128 (404)
T COG4992          53 VNNLGHCHPALVEALKEQAEKLWHVSNLF----YNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPE  128 (404)
T ss_pred             eeccCCCCHHHHHHHHHHHHHhhhccccc----CChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCC
Confidence            44578888877764322111111111222    23578889999999996 77889999999999754432   22  2 


Q ss_pred             CCEEEecCCCCCc-HHHHH--------hhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc----HH
Q 016612           93 GEEIVAGDDLYGG-TDRLL--------SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IR  159 (386)
Q Consensus        93 g~~Vlv~~~~~~~-~~~~~--------~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~  159 (386)
                      ..+|+....+|++ +...+        +..+...--.+.++|..|+++++++++++|.+|+++..+-..|.+.+    ++
T Consensus       129 k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~  208 (404)
T COG4992         129 KSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLK  208 (404)
T ss_pred             CcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHH
Confidence            2356655555443 32211        11111111246677888999999999999999999999998888874    89


Q ss_pred             HHHHHHHHcCCEEEEeCCCCC----CCccC--CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCC
Q 016612          160 KIAEMAHAHGALLLVDNSIMS----PVLSR--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a~~~----~~~~~--~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~  233 (386)
                      ++.++|++||+++|.||+|..    |.+..  .....+||++  +.|.++|  |+.+|.++.+ +.+...+..-.+.+.-
T Consensus       209 ~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t--laK~LgG--G~PigA~la~-~~~~~~~~~G~HgSTf  283 (404)
T COG4992         209 ALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT--LAKALGG--GFPIGAMLAT-EEIASAFTPGDHGSTF  283 (404)
T ss_pred             HHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEE--eeccccC--CccceeeEEc-hhhhhcCCCCcccCCC
Confidence            999999999999999999862    33221  2234578885  6999976  4778988887 5455544444444445


Q ss_pred             CCChhhHHHHHhcCCcHHHHHHHHHHHHHHHH----HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH
Q 016612          234 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIA----EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  309 (386)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~  309 (386)
                      +-++..+++....++.+..  +...++.+...    +.|++...    -++-+.          ..+++|-++.+.+...
T Consensus       284 GGNpLacAv~~a~l~~l~~--e~ll~~v~~~g~~~~~~L~~l~~----~~~~v~----------~vRG~GLmiGiel~~~  347 (404)
T COG4992         284 GGNPLACAVALAVLEVLLE--EGLLENVREKGEYLLQRLRELKR----RYPLVK----------EVRGRGLMIGIELKEP  347 (404)
T ss_pred             CcCHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHhh----cCCcee----------eeecceeEEEEEecCc
Confidence            6677777666655543321  33344444444    44443211    111122          2378899999999665


Q ss_pred             HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+..+.+.+...|+.+...+                           ++.+|+.+.    .+++++.+++++++|++.
T Consensus       348 ~~a~~~~~~~~~~gvL~~~a~---------------------------~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~  399 (404)
T COG4992         348 YRARDIVRALREEGVLVLPAG---------------------------PNVIRFLPPLVITEEEIDEALDALERALAAA  399 (404)
T ss_pred             ccHHHHHHHHHHCCeEEecCC---------------------------CCeEEecCCccCCHHHHHHHHHHHHHHHHHh
Confidence            456777888888887644322                           345888764    599999999999998764

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.82  E-value=2.8e-18  Score=161.15  Aligned_cols=287  Identities=16%  Similarity=0.075  Sum_probs=183.2

Q ss_pred             chHHHHHHHHHhhcCCC----ceE--EeCcHHHHHH-HHHHhc--------CC-----CCEEEecCCCCCcHHHHHhhhc
Q 016612           55 PTRDALESLLAKLDKAD----RAL--CFTSGMAALA-AVTHLL--------GT-----GEEIVAGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~----~~i--~~~~gt~al~-~~~~~~--------~~-----g~~Vlv~~~~~~~~~~~~~~~~  114 (386)
                      .+.+++++++++++|.+    +.+  ++++||+|.+ ++.+..        +.     +..|++++..|.++.    +.+
T Consensus        80 ~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~----ka~  155 (431)
T TIGR01788        80 EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWE----KFA  155 (431)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHH----HHH
Confidence            46788889999999876    233  3577788865 443321        11     237899999998886    445


Q ss_pred             ccCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc------CCEEEEeCCCCCCC
Q 016612          115 PKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPV  182 (386)
Q Consensus       115 ~~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------~~~li~D~a~~~~~  182 (386)
                      +..|++++.++.+      |+++|++.++++|.+|+++..+|.+|.+.|+++|.++|+++      |+++++|.+|+.+.
T Consensus       156 ~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~  235 (431)
T TIGR01788       156 RYFDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFI  235 (431)
T ss_pred             HHcCceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHH
Confidence            5567777766642      78999999999999999999999999999999999999999      99999999998433


Q ss_pred             -------cc-CCCCCCccEEEeccccccccCCCceEEEEEEcChhH-HHHHH----Hhhhhc---CC-CC----ChhhHH
Q 016612          183 -------LS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELY----FLQNAE---GS-GL----APFDCW  241 (386)
Q Consensus       183 -------~~-~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~-~~~~~----~~~~~~---~~-~~----~~~~~~  241 (386)
                             .. +....++|.+..|.|||+.+|.|  +|+++++++.. ...+.    .+....   +. ..    .....|
T Consensus       236 ~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w  313 (431)
T TIGR01788       236 APFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQY  313 (431)
T ss_pred             HHHhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHH
Confidence                   11 11234788999999999878888  79988886532 22111    110000   00 00    112223


Q ss_pred             HHHhcC--CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC----HHhHHHH
Q 016612          242 ICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----LALSKHV  315 (386)
Q Consensus       242 ~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~l  315 (386)
                      +.+..+  ..+....++..+.++.+.+.|++.+.+              +++.+.  ...++++|.+.+    .....++
T Consensus       314 ~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~--------------el~~~~--~~~~iV~Fr~~~~~~~~~~~~~l  377 (431)
T TIGR01788       314 YNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPF--------------EIISDG--SGIPLVAFKLKDDADPGYTLYDL  377 (431)
T ss_pred             HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCE--------------EEeeCC--CCceEEEEEeCCCCCCCcCHHHH
Confidence            333322  234444555556666666666655422              222110  145889998853    2235567


Q ss_pred             HhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC-CCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL-TEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      .+.+...|+.+..-.      .|.               .+ +.-++|+++-    .+.++++++.|.+++..+
T Consensus       378 ~~~L~~~G~~~~~~~------~p~---------------~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       378 SHRLRERGWIVPAYT------LPK---------------NAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             HHHHHHCCCcccCCC------CCC---------------ccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            777777776422100      110               01 1234899884    477788888888777654

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.80  E-value=2e-18  Score=143.07  Aligned_cols=154  Identities=29%  Similarity=0.331  Sum_probs=124.5

Q ss_pred             HHHHHHHHHhhc--CCCceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCC-----
Q 016612           57 RDALESLLAKLD--KADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-----  128 (386)
Q Consensus        57 ~~~l~~~l~~~~--g~~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d-----  128 (386)
                      +.++++.+++++  +.+..+++++|++|+.+ +.++.++|++|+++++.|++...   ..++..|.+++.++.++     
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~   78 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGG   78 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccc
Confidence            467899999999  77788888888999875 45567789999999999988852   45567888998887641     


Q ss_pred             H--HHHHhhh-CCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----CCCCCCccEEEeccccc
Q 016612          129 L--DEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKF  201 (386)
Q Consensus       129 ~--~~l~~~~-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----~~~~~~~di~~~S~sK~  201 (386)
                      .  +++++.. .++++++++++++|++|...|+++|.++|+++|+++|+|++++.+...    +....++|+++.|++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~  158 (170)
T cd01494          79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKN  158 (170)
T ss_pred             hhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccc
Confidence            1  2444433 478999999999999999999999999999999999999999876654    24456799999999999


Q ss_pred             cccCCCceEEEEEEc
Q 016612          202 IAGHSDVMAGVLAVK  216 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~  216 (386)
                      +++ +  ++|+++++
T Consensus       159 ~~~-~--~~G~l~~~  170 (170)
T cd01494         159 LGG-E--GGGVVIVK  170 (170)
T ss_pred             cCC-C--ceEEEEeC
Confidence            976 3  37998864

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK02769 histidine decarboxylase; Provisional

Probab=99.80  E-value=1.7e-17  Score=153.87  Aligned_cols=159  Identities=16%  Similarity=0.194  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHhhcCCC--c--eEEeCcHHHHHH-HHHHh--cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC--
Q 016612           56 TRDALESLLAKLDKAD--R--ALCFTSGMAALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--  126 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~--~i~~~~gt~al~-~~~~~--~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--  126 (386)
                      ..+++.+++++++|.+  +  .+++++||++.. ++...  +.++++|++++..|.+...++    +..|++...++.  
T Consensus        66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~----~~lg~~~~~V~~~~  141 (380)
T PRK02769         66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIA----RLLRIKSRVITSLP  141 (380)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHH----HHcCCCCceeccCC
Confidence            5667888899999875  3  367777888853 43332  467889999999999987554    334444444443  


Q ss_pred             ---CCHHHHHhhhCCC---ceEEEEeCCCCCCcccccHHHHHHHHHHcC---CEEEEeCCCCCCCcc-------CCCCCC
Q 016612          127 ---CDLDEVASAIGPW---TKLVWVESPTNPRQQICDIRKIAEMAHAHG---ALLLVDNSIMSPVLS-------RPLELG  190 (386)
Q Consensus       127 ---~d~~~l~~~~~~~---~~~v~~~~~~nptG~~~~l~~i~~la~~~~---~~li~D~a~~~~~~~-------~~~~~~  190 (386)
                         .|+++|++.++++   |.+|+++.++|++|.+.|+++|.++|+++|   +++++|.+++.+..+       -....+
T Consensus       142 ~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~  221 (380)
T PRK02769        142 NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADG  221 (380)
T ss_pred             CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCC
Confidence               2899999998765   999999999999999999999999999998   699999999876653       111237


Q ss_pred             ccEEEeccccccccCCCceEEEEEEcChhH
Q 016612          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      +|.++.|.||++++|.|  +|+++.+++.+
T Consensus       222 vDsis~s~HK~~~~P~g--~G~l~~r~~~~  249 (380)
T PRK02769        222 IDSIAISGHKFIGSPMP--CGIVLAKKKYV  249 (380)
T ss_pred             CCEEEECCcccCCCCCC--cEEEEEehhhh
Confidence            99999999999987888  79998886543

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.80  E-value=1.6e-17  Score=167.84  Aligned_cols=158  Identities=18%  Similarity=0.165  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH----HHHH-HHHHhcCC-CC----EEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM----AALA-AVTHLLGT-GE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt----~al~-~~~~~~~~-g~----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      +..++++++++++|.+.+++..+++    .+++ ++.+++++ ||    +|+++...|++....|.    ..|++++.++
T Consensus       569 ~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~----~~G~~vv~v~  644 (993)
T PLN02414        569 MFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA----MCGMKIVVVG  644 (993)
T ss_pred             HHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH----HCCCEEEEec
Confidence            5788999999999997777776655    3444 55556755 88    89999999999875543    4799999998


Q ss_pred             CC-----CHHHHHhhhC---CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC--ccCCCCCCccEEE
Q 016612          126 TC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVM  195 (386)
Q Consensus       126 ~~-----d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~~di~~  195 (386)
                      ++     |+++|+++++   +++++|++++|+|.+|...|+++|.++||++|+++++|.++..+.  +.++.+.|+|+++
T Consensus       645 ~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~  724 (993)
T PLN02414        645 TDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCH  724 (993)
T ss_pred             cCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEE
Confidence            74     8999999998   478999999999999999999999999999999999999997665  3356688999999


Q ss_pred             eccccccccCCC---ceEEEEEEcC
Q 016612          196 HSATKFIAGHSD---VMAGVLAVKG  217 (386)
Q Consensus       196 ~S~sK~~~g~~g---~~~G~i~~~~  217 (386)
                      +|.||+|++|.|   --.|++++++
T Consensus       725 ~s~HK~f~~P~G~GGPg~G~l~~~~  749 (993)
T PLN02414        725 LNLHKTFCIPHGGGGPGMGPIGVKK  749 (993)
T ss_pred             ecCCccCCcCcccCCCCeeeEEEch
Confidence            999998874432   1268898874

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.80  E-value=1.2e-17  Score=138.86  Aligned_cols=264  Identities=18%  Similarity=0.221  Sum_probs=175.7

Q ss_pred             ceEEeCcHH-HHHHHHHH-hcCCC-CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhC--CCce
Q 016612           72 RALCFTSGM-AALAAVTH-LLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTK  141 (386)
Q Consensus        72 ~~i~~~~gt-~al~~~~~-~~~~g-~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~--~~~~  141 (386)
                      +.+.++-|+ +.+.++++ .+.|| +++++-.|+|.-|.    --+...+++++.++..     +.+.+.+.++  .+++
T Consensus        87 dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK  162 (375)
T KOG0633|consen   87 DNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIK  162 (375)
T ss_pred             cceEEecCcHHHHHHHHhheecCCccceeecCCcceeEE----EEeecCCceEEEecCCCCccccHHHHHHHHhccccce
Confidence            567778887 77876655 68999 88999999998773    4466788999998864     7888887775  5899


Q ss_pred             EEEEeCCCCCCcccccHHHHHHHHHHc-CCEEEEeCCCCC--CC---ccCCCCCCccEEEeccccccccCCCceEEEEEE
Q 016612          142 LVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMS--PV---LSRPLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (386)
Q Consensus       142 ~v~~~~~~nptG~~~~l~~i~~la~~~-~~~li~D~a~~~--~~---~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~  215 (386)
                      ++++++|.||||.....+.|.++.+.. +.++++||+|-.  |.   ..-..+..+-+++.++||.| |..|+|+|+-+.
T Consensus       163 ~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsf-GLAGiRvG~~~~  241 (375)
T KOG0633|consen  163 CIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSF-GLAGIRVGYGAF  241 (375)
T ss_pred             EEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhc-CcceeEeecccc
Confidence            999999999999999877777777654 789999999742  21   11122346679999999999 788999999998


Q ss_pred             cChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhh
Q 016612          216 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  290 (386)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i  290 (386)
                      + ..+.+.+......  -+++.+...+++.++.     .+....+...+...++-..|...+        .+.++++   
T Consensus       242 ~-~~ia~iln~~KaP--YNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~--------~~~~~~g---  307 (375)
T KOG0633|consen  242 P-LSIAEILNRAKAP--YNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVP--------FLNDYPG---  307 (375)
T ss_pred             c-HHHHHHHHhccCC--ccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCc--------cccCCCC---
Confidence            6 4455544333322  2334444444444433     333333344444444433333332        2333322   


Q ss_pred             hhhccCCCCceEEEEeC---CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-
Q 016612          291 HYSQAKGAGSVLSFLTG---SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-  366 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-  366 (386)
                           ...+.++.+.+.   +....+...+-+...|+.+++.+..-                      ...|++||++| 
T Consensus       308 -----g~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~----------------------~c~G~lRitvGt  360 (375)
T KOG0633|consen  308 -----GSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEE----------------------GCKGYLRITVGT  360 (375)
T ss_pred             -----cccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCcc----------------------ccceeEEEEcCC
Confidence                 234677888773   33334444455566678777654311                      13788999998 


Q ss_pred             cCChHHHHHHHHHHH
Q 016612          367 IEDVNDLISDLDKAL  381 (386)
Q Consensus       367 ~~~~~~~i~~l~~~l  381 (386)
                      .|+..-+++.+++.+
T Consensus       361 ~EentvL~k~~K~~l  375 (375)
T KOG0633|consen  361 PEENTVLMKCLKQFL  375 (375)
T ss_pred             cccchHHHHHHHhhC
Confidence            588889999988764

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.79  E-value=1e-17  Score=141.93  Aligned_cols=279  Identities=19%  Similarity=0.257  Sum_probs=190.1

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHH-HHHHHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~a-l~~~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      |....+|+..++++|.+..++++|||.+ +.+++.- -+||.+|++.+..|--.... -.+....|+.++.+...     
T Consensus        56 ~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~-gg~s~l~gv~~~tv~~e~dgtm  134 (384)
T KOG1368|consen   56 PTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQ-GGISQLAGVHVRTVKNENDGTM  134 (384)
T ss_pred             ccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEeccchheeehhc-cChhhhccceeEeeeeCCCCee
Confidence            6788999999999999999999999965 5577664 56999999988777332211 13445566666665532     


Q ss_pred             CHHHHHhhhC--------CCceEEEEeCCCCCCc-ccccH---HHHHHHHHHcCCEEEEeCCCCC------CCccCCCCC
Q 016612          128 DLDEVASAIG--------PWTKLVWVESPTNPRQ-QICDI---RKIAEMAHAHGALLLVDNSIMS------PVLSRPLEL  189 (386)
Q Consensus       128 d~~~l~~~~~--------~~~~~v~~~~~~nptG-~~~~l---~~i~~la~~~~~~li~D~a~~~------~~~~~~~~~  189 (386)
                      |++++++++.        +.|++|.+++.+|.+| .++|+   .+|.++|++||+.+++|++.-+      ++...-...
T Consensus       135 ~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~  214 (384)
T KOG1368|consen  135 DLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICS  214 (384)
T ss_pred             eHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHH
Confidence            8999999886        3689999999988887 77785   5688899999999999999432      221111122


Q ss_pred             CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCC--ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Q 016612          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEF  267 (386)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  267 (386)
                      ..|-+...+||.++.|-   +.+++++ +.+..+.+.+....|.++  +...+++++-++..-...+.+..+.++.+.++
T Consensus       215 ~fDSVsiCLSKglgAPV---GSViVG~-k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~  290 (384)
T KOG1368|consen  215 AFDSVSICLSKGLGAPV---GSVIVGS-KDFIDKARHFRKALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEY  290 (384)
T ss_pred             hhhhhhhhhhccCCCCc---ccEEEcc-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            45777777999997763   4666665 566666666655554443  34455555556655455667777888899999


Q ss_pred             HhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe-CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCC
Q 016612          268 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  346 (386)
Q Consensus       268 l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~  346 (386)
                      +++.+.+ ..-.+               ...+.|+.+.+ ...-..+.+.+.+.+.|+..-.|..+              
T Consensus       291 ~~~~~~i-~v~v~---------------a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~--------------  340 (384)
T KOG1368|consen  291 INTPEEI-RVEVP---------------AVETNIVNMVLCQARLTAEELCKFLEKNGILLMGGASR--------------  340 (384)
T ss_pred             hccccce-eeecc---------------hhhcceeeeecccccCCHHHHHHHHHHCCeEEeecccc--------------
Confidence            8865422 11111               12456667665 23345778888888888876555432              


Q ss_pred             CHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 016612          347 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       347 ~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                                   .+|+.+.+.-.++-++.+.+++
T Consensus       341 -------------r~Rivlh~Qvt~~~ve~~~~~~  362 (384)
T KOG1368|consen  341 -------------RIRIVLHHQVTDEDVEYVKSVL  362 (384)
T ss_pred             -------------ceEEEEEEecCHHHHHHHHHHH
Confidence                         2899998766666666665555

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.79  E-value=5.2e-17  Score=142.78  Aligned_cols=232  Identities=22%  Similarity=0.215  Sum_probs=157.8

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcc--cCCcEEEEeCC----C
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP--KTGVVVKRVNT----C  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~--~~g~~~~~v~~----~  127 (386)
                      |..+++++.+++++|....++++|||++.. ++.+.++||+.|++....|-.....  ...+  ..+.++..++-    .
T Consensus        35 ~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~--Ga~~~~~~~~~~~~~~g~~Gkl  112 (342)
T COG2008          35 PTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDEC--GAPEFFGGGQKLPIVPGADGKL  112 (342)
T ss_pred             HHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceeccc--CcHHHHcCCceeccCCCCCCCc
Confidence            689999999999999989999999998876 6777899999999998888544322  1111  12244444442    2


Q ss_pred             CHHHHHhhhC------CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCC------CCCccCCCCCCcc
Q 016612          128 DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM------SPVLSRPLELGAD  192 (386)
Q Consensus       128 d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~------~~~~~~~~~~~~d  192 (386)
                      ++++++..+.      ..+.++++.+.+|..|.+++   +++|.++|+++|+.|++|++--      .+........++|
T Consensus       113 t~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D  192 (342)
T COG2008         113 TPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVD  192 (342)
T ss_pred             CHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCC
Confidence            8999998765      24556666666667899987   6788999999999999999942      1211112235899


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCCh--hhHHHHHhcCCcHHHHHHHHHHH--HHHHHHHH
Q 016612          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP--FDCWICLRGVKTMALRVEKQQDN--AQKIAEFL  268 (386)
Q Consensus       193 i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l  268 (386)
                      ++.+++||.++.|    +|.++..+..+.+..+.++...|..++.  +.++..+..++.-.++.....+|  +++|.+.+
T Consensus       193 ~v~~~~tK~g~~~----~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~  268 (342)
T COG2008         193 SVSFCLTKGGGAP----VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGL  268 (342)
T ss_pred             EEEEecccCCcce----eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998654    4555556677877787777666655444  33333344455444555566666  67777766


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  309 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~  309 (386)
                      +..+              |..+..+   ..++++.+.+++.
T Consensus       269 ~~~~--------------G~~~~~~---~~tN~vf~~l~~~  292 (342)
T COG2008         269 EAKP--------------GVKLAFP---VETNMVFVRLPES  292 (342)
T ss_pred             hhcC--------------CceeccC---CcccEEEEECChH
Confidence            6543              3333221   3567788888654

>PLN03032 serine decarboxylase; Provisional

Probab=99.78  E-value=9e-17  Score=147.89  Aligned_cols=209  Identities=18%  Similarity=0.195  Sum_probs=147.8

Q ss_pred             hHHHHHHHHHhhcCCC--ce--EEeCcHHHHHH-HHHHh--cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD--RA--LCFTSGMAALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~--i~~~~gt~al~-~~~~~--~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..+++.+++++++|.+  +.  +++++||+|.. ++...  ..++++|+++...|.+...+    ++..|+.++.++.+ 
T Consensus        67 ~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~ka----a~~lg~~~~~V~~d~  142 (374)
T PLN03032         67 FEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMEAVKVPTLP  142 (374)
T ss_pred             HHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHH----HHHcCCCCeEeeeCC
Confidence            6778889999999975  33  78888898864 44432  23556899999999998744    44455555555543 


Q ss_pred             ----CHHHHHhhhCC---CceEEEEeCCCCCCcccccHHHHHHHHHHcC-----CEEEEeCCCCCCCccC-------CCC
Q 016612          128 ----DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHG-----ALLLVDNSIMSPVLSR-------PLE  188 (386)
Q Consensus       128 ----d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~la~~~~-----~~li~D~a~~~~~~~~-------~~~  188 (386)
                          |+++|++++.+   +|.+|+++..+|++|.+.|+++|+++|+++|     +++++|.+++.+..+.       ...
T Consensus       143 ~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~  222 (374)
T PLN03032        143 SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR  222 (374)
T ss_pred             CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCC
Confidence                89999999975   5778889999999999999999999999996     5899999998765431       112


Q ss_pred             CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHH-hhh-------hcCC--CCChhhHHHHHh--cCCcHHHHHHH
Q 016612          189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN-------AEGS--GLAPFDCWICLR--GVKTMALRVEK  256 (386)
Q Consensus       189 ~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~-~~~-------~~~~--~~~~~~~~~~~~--~~~~~~~~~~~  256 (386)
                      .++|.++.|+||+++.|.|  +|+++.+++.+ +.+.. ..+       ..++  +......|+.+.  +.+.+..+.++
T Consensus       223 ~~vDSis~s~HK~~g~P~g--~G~ll~r~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~  299 (374)
T PLN03032        223 KPIGSVSVSGHKFLGCPMP--CGVALTRKKHV-KALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQH  299 (374)
T ss_pred             cCCcEEEECcccccCCCcC--eEEEEEEchhh-HhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            3689999999999966887  79999886543 22211 110       1111  122344454443  44556667777


Q ss_pred             HHHHHHHHHHHHhhC
Q 016612          257 QQDNAQKIAEFLASH  271 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (386)
                      ..+.++.+.+.+++.
T Consensus       300 ~~~~a~~l~~~l~~~  314 (374)
T PLN03032        300 CMRNAHYLKDRLTEA  314 (374)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            778888888888764

>PLN02624 ornithine-delta-aminotransferase

Probab=99.78  E-value=1.4e-17  Score=159.43  Aligned_cols=316  Identities=13%  Similarity=0.131  Sum_probs=184.2

Q ss_pred             CCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh---c---C----
Q 016612           22 PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL---L---G----   91 (386)
Q Consensus        22 ~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~---~---~----   91 (386)
                      .+|..+|.+.++......+    .........++...++++.++++++.+..++++||++|+.+.+.+   .   +    
T Consensus        88 ~~Gh~~p~v~~ai~~ql~~----~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~  163 (474)
T PLN02624         88 NQGHCHPKIIKALTEQAEK----LTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIP  163 (474)
T ss_pred             cCCCCCHHHHHHHHHHHHh----cCCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCC
Confidence            3677777776643322211    111111123456778888899988888899999999988633321   1   1    


Q ss_pred             CCC-EEEecCCCCCcHHHHHhhhcc------cC---CcEEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc-
Q 016612           92 TGE-EIVAGDDLYGGTDRLLSRVTP------KT---GVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD-  157 (386)
Q Consensus        92 ~g~-~Vlv~~~~~~~~~~~~~~~~~------~~---g~~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~-  157 (386)
                      +++ .|+.....|++.......+..      .+   ...+..++..|++.+++.++   +++++|++++++|++|.+.| 
T Consensus       164 ~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~  243 (474)
T PLN02624        164 KNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPP  243 (474)
T ss_pred             CCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCC
Confidence            133 466666666554211111110      00   01244566678999998885   57889999999999999987 


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh
Q 016612          158 ---IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (386)
Q Consensus       158 ---l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~  228 (386)
                         +++|.++|++||+++|+||+|.. +...     +......|+++  ++|.+++ +++++|+++.+ +++.+.+....
T Consensus       244 ~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~--lsK~lgg-G~~pigav~~~-~~i~~~~~~~~  319 (474)
T PLN02624        244 DGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVI--LGKALGG-GVIPVSAVLAD-KDVMLCIKPGE  319 (474)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEE--ecccccC-CCCcceeeeec-HHHHhHhccCC
Confidence               99999999999999999999862 2111     11223467776  5899964 44678999886 44544443222


Q ss_pred             hhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC
Q 016612          229 NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  308 (386)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~  308 (386)
                      .....+.++....++...++.+..  ....++...+.+.+.+...  . +...++..      ....++.|.++.+.++.
T Consensus       320 ~~~T~~g~pl~~aaa~aaLe~l~~--~~l~~~~~~~~~~l~~~L~--~-l~~~~~~~------i~~vrg~G~~~~i~l~~  388 (474)
T PLN02624        320 HGSTFGGNPLASAVAMAALQVVQD--EKLAERSAKLGQELRDQLQ--K-IQKQFPKL------IKEVRGRGLLNAVVLNS  388 (474)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHH--H-HHHhCCCc------eEEEEeeEEEEEEEecC
Confidence            222224555666655555543321  1222333333333322110  0 00011100      01124567788877743


Q ss_pred             ----HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHH
Q 016612          309 ----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKA  380 (386)
Q Consensus       309 ----~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~  380 (386)
                          ......+.+.+..+|+.+.++.                           .+++||++.    .++++++++.|+++
T Consensus       389 ~~~~~~~a~~~~~~L~e~GV~v~p~~---------------------------~~~lR~~p~l~~t~e~id~~l~~L~~~  441 (474)
T PLN02624        389 PKLGPVSAYDVCLKLKERGLLAKPTH---------------------------DTIIRLAPPLSISEDELQECSKALSDV  441 (474)
T ss_pred             CCcChHHHHHHHHHHHhCCeEEecCC---------------------------CCEEEEECCccCCHHHHHHHHHHHHHH
Confidence                2345677777877888654321                           345999864    47888888888877


Q ss_pred             Hhc
Q 016612          381 LRT  383 (386)
Q Consensus       381 l~~  383 (386)
                      +++
T Consensus       442 l~~  444 (474)
T PLN02624        442 LEH  444 (474)
T ss_pred             HHH
Confidence            754

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.77  E-value=6.1e-17  Score=151.39  Aligned_cols=210  Identities=15%  Similarity=0.133  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeCcHH-HHHHHHHHhcC----CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-
Q 016612           56 TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLLG----TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-  126 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~~~~~~~~----~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-  126 (386)
                      +.+++++.+++++|.+   ..+++++|| .++.+++..++    +||.|+++...|.++.    +.+...|++++.++. 
T Consensus       106 l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~----kAi~~~G~~pv~Vd~~  181 (444)
T TIGR03531       106 LTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCI----KAISTAGFEPRVIETV  181 (444)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHH----HHHHHcCCeEEEeeee
Confidence            5677888899999998   688999999 67765444444    5899999999888775    566788899888884 


Q ss_pred             -------CCHHHHHhhhCC---CceEEEEeCCC-CCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc------CCCCC
Q 016612          127 -------CDLDEVASAIGP---WTKLVWVESPT-NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL  189 (386)
Q Consensus       127 -------~d~~~l~~~~~~---~~~~v~~~~~~-nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~------~~~~~  189 (386)
                             .|++++++++++   +..++++.+|+ ++.|...|+++|.++|++||+++|+|++|+.+...      .....
T Consensus       182 ~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~  261 (444)
T TIGR03531       182 LDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKV  261 (444)
T ss_pred             ecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccc
Confidence                   189999999985   45666666554 45567789999999999999999999999864422      12223


Q ss_pred             C-ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHH--HhcCCcHHHHHHHHHHHHHHHHH
Q 016612          190 G-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC--LRGVKTMALRVEKQQDNAQKIAE  266 (386)
Q Consensus       190 ~-~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~  266 (386)
                      | +|++++|+||++..|.+  +|+++++++++.+.+................++.  ..+.+.+....++..++++.+.+
T Consensus       262 Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~  339 (444)
T TIGR03531       262 GRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKE  339 (444)
T ss_pred             cCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            3 59999999999977655  7777787777776665432221111111222222  23445566666667777777777


Q ss_pred             HHhhC
Q 016612          267 FLASH  271 (386)
Q Consensus       267 ~l~~~  271 (386)
                      .|++.
T Consensus       340 ~L~~l  344 (444)
T TIGR03531       340 LLQKL  344 (444)
T ss_pred             HHHHH
Confidence            77653

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PLN00144 acetylornithine transaminase

Probab=99.77  E-value=1.2e-17  Score=156.00  Aligned_cols=316  Identities=17%  Similarity=0.162  Sum_probs=190.4

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh----cC---
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL----LG---   91 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~----~~---   91 (386)
                      ...+|..+|++.++......+.    .+ ++.. .++...++.+.+.+..+.+...+++||++|+.+.+.+    ..   
T Consensus        26 ~~~lGh~~p~v~~ai~~q~~~~----~~-~~~~~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~  100 (382)
T PLN00144         26 VNALGHGDPDWVKAVAEQAGTL----AH-VSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRA  100 (382)
T ss_pred             hccCCCCCHHHHHHHHHHHHhc----CC-ccccccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHHHHhccC
Confidence            4458888888776433222211    11 1111 2456677888888877667888899999998633221    11   


Q ss_pred             ---C------CCEEEecCCCCCcHHHHHhhhccc------C---CcEEEEeCCCCHHHHHhhhC-CCceEEEEeCCCCCC
Q 016612           92 ---T------GEEIVAGDDLYGGTDRLLSRVTPK------T---GVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPR  152 (386)
Q Consensus        92 ---~------g~~Vlv~~~~~~~~~~~~~~~~~~------~---g~~~~~v~~~d~~~l~~~~~-~~~~~v~~~~~~npt  152 (386)
                         +      ..+|+.-...|++.......+...      +   -..+..++..|++.+++.+. +++++|+++..+||.
T Consensus       101 ~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~g  180 (382)
T PLN00144        101 PDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEG  180 (382)
T ss_pred             CCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCC
Confidence               0      246777777776653221111111      0   01245666778999998885 578899999889995


Q ss_pred             cccc--c--HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHH
Q 016612          153 QQIC--D--IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (386)
Q Consensus       153 G~~~--~--l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~  222 (386)
                      |...  +  +++|.++|++||+++|+||+++. +...     .......|  +.|++|.+++  |+++|+++++ +++.+
T Consensus       181 g~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~~--G~pig~v~~~-~~~~~  255 (382)
T PLN00144        181 GIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLAKPLAG--GLPIGAVLVT-EKVAS  255 (382)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC--EEEecccccC--CcceEEEEEc-HHHHh
Confidence            5543  2  89999999999999999999762 1111     12234567  4567999953  5899999997 45655


Q ss_pred             HHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceE
Q 016612          223 ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  302 (386)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  302 (386)
                      .+.........+.++..+.++...++.+.  .....++++.+.+.+.+.-      ...+..++..    ...++.|.++
T Consensus       256 ~~~~~~~~~T~~~~pl~~aaa~a~l~~i~--~~~~~~~~~~~g~~l~~~l------~~~~~~~~~~----~~vrg~G~~~  323 (382)
T PLN00144        256 AINPGDHGSTFAGGPLVCNAALAVLDKIS--KPGFLASVAKKGEYLRELL------RRKLGGNPHV----KEVRGVGLLV  323 (382)
T ss_pred             ccCCCCCCCCCCCCHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHH------HHHHhhCCCc----eeeecCceEE
Confidence            44332333344566666666654444332  1334455555555443210      0011111111    1124578889


Q ss_pred             EEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHH
Q 016612          303 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  378 (386)
Q Consensus       303 ~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~  378 (386)
                      ++.++.  ....+.+.+...|+.+.++..                          .+.||++++.    +++++.++.|.
T Consensus       324 ~l~l~~--~~~~~~~~~~~~Gv~i~~~~~--------------------------~~~lrl~p~~~~~~~~i~~~~~~l~  375 (382)
T PLN00144        324 GIQLDV--PAGPLVDACRDSGLLVLTAGK--------------------------GDVVRLVPPLVISEAELEQAVEILA  375 (382)
T ss_pred             EEEecC--ccHHHHHHHHHCCeEEeecCC--------------------------CCEEEEeCCCccCHHHHHHHHHHHH
Confidence            998832  245677777778886654321                          2459999864    77888888888


Q ss_pred             HHHhcCC
Q 016612          379 KALRTGP  385 (386)
Q Consensus       379 ~~l~~~~  385 (386)
                      ++|.+.+
T Consensus       376 ~~l~~~~  382 (382)
T PLN00144        376 DCLPALD  382 (382)
T ss_pred             HHHHhcC
Confidence            8887653

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.77  E-value=2.6e-17  Score=144.60  Aligned_cols=319  Identities=18%  Similarity=0.240  Sum_probs=207.0

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCC-CCCccccCC--CCc-hHHHHHHHHHhhcCCCceEEeCcHHHHHH-H
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-NGPYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAALA-A   85 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~   85 (386)
                      .+.-..+ +|||+|+..-|......  +..+.. ..+-+=.+.  |.. ....+|+.|+++.+.+..++++|+.-|.. .
T Consensus       171 k~VtVWC-SNDYLgms~Hp~V~~A~--~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDst  247 (570)
T KOG1360|consen  171 KKVTVWC-SNDYLGMSRHPEVLDAM--HDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDST  247 (570)
T ss_pred             CceEEEe-cCccccccCChHHHHHH--HHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchH
Confidence            3344456 79999987655433111  111111 111222233  654 67889999999999999999999975542 2


Q ss_pred             H--HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC----CCceEEEEeCCCCCCcccccHH
Q 016612           86 V--THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIR  159 (386)
Q Consensus        86 ~--~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~  159 (386)
                      +  ++-.-||=+++.....|.+..    .-.+..+++-..+..+|+++|++++.    ..+|+|.++.++.++|.+.|++
T Consensus       248 LftLak~lpgcei~SD~gNHASMI----~GIrns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcple  323 (570)
T KOG1360|consen  248 LFTLAKKLPGCEIFSDEGNHASMI----QGIRNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLE  323 (570)
T ss_pred             HHHHHHHCCCcEEeccccchHHHH----HHhhhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHH
Confidence            2  223346766777667776654    33446667666677789999998886    4678999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCCCCCCccCC---------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh
Q 016612          160 KIAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~  230 (386)
                      +|.+++++||.+.++||+++.|.+..-         .....||+.+++.|.|+.    .+|++... ..+.+.++.....
T Consensus       324 elcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc----VGGYIAat-~~LvDmiRSyAaG  398 (570)
T KOG1360|consen  324 ELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC----VGGYIAAT-RKLVDMIRSYAAG  398 (570)
T ss_pred             HHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc----ccceehhh-hhHHHHHHHhcCc
Confidence            999999999999999999987665421         112469999999999954    36899876 5677777765543


Q ss_pred             c--CCCCChhhHHHHHhcCC---cH--HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEE
Q 016612          231 E--GSGLAPFDCWICLRGVK---TM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  303 (386)
Q Consensus       231 ~--~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~  303 (386)
                      +  .+.+++....-++.+.+   ..  ...+++.+++.+.+++.|.+.         +++.++          ..+.++.
T Consensus       399 FIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~---------GiPVi~----------~pSHIiP  459 (570)
T KOG1360|consen  399 FIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL---------GIPVIP----------NPSHIIP  459 (570)
T ss_pred             eEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc---------CCcccC----------CCcceee
Confidence            3  34455533322222221   11  223456777888888888765         344332          2457788


Q ss_pred             EEeCCHHhHHHHHhhc----CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHH
Q 016612          304 FLTGSLALSKHVVETT----KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK  379 (386)
Q Consensus       304 ~~~~~~~~~~~l~~~l----~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~  379 (386)
                      +.+.+.....++.+.|    .++.-.+++         |..              ..+...+||..+..++.+..+.|-+
T Consensus       460 v~vgda~l~~~~sd~Li~~h~iYvQaINy---------PTV--------------~rG~E~LRiaPTP~HT~~mm~~lv~  516 (570)
T KOG1360|consen  460 VRVGDAALAKQASDILISKHNIYVQAINY---------PTV--------------ARGTERLRIAPTPHHTPQMMNILVN  516 (570)
T ss_pred             eeccCHHHHHHHHHHHHHhcCeEEEeccC---------Ccc--------------cccceeeecCCCCCCCHHHHHHHHH
Confidence            8887766666655544    332222332         211              1245679999988777777777766


Q ss_pred             HHhc
Q 016612          380 ALRT  383 (386)
Q Consensus       380 ~l~~  383 (386)
                      +|..
T Consensus       517 ~l~~  520 (570)
T KOG1360|consen  517 ALLD  520 (570)
T ss_pred             HHHH
Confidence            6543

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.77  E-value=3.5e-17  Score=150.66  Aligned_cols=274  Identities=17%  Similarity=0.109  Sum_probs=168.1

Q ss_pred             chHHHHHHHHHhhcCC-C--ceEEeCc-HHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC---
Q 016612           55 PTRDALESLLAKLDKA-D--RALCFTS-GMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~-~--~~i~~~~-gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---  126 (386)
                      ...+++++.++++++. +  +.+++++ ||.|+.+ +..++.+||++++...+..+.  -|..+++..|+ +..+..   
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~--r~~~~a~~~g~-~~~~~~~~~  113 (349)
T TIGR01364        37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSK--KAAKEAKKYGV-VNVVASGKE  113 (349)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHH--HHHHHHHHhCC-cEEEecccc
Confidence            3678889999999985 3  3555544 7899985 566788999988766555443  34588888888 544441   


Q ss_pred             ------CCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEecccc
Q 016612          127 ------CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK  200 (386)
Q Consensus       127 ------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK  200 (386)
                            .++++++  +++++++|.+++..|.||...+     ++++.+++++++|.+++.|+.+-..+ +.|++++|.+|
T Consensus       114 ~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~-~~d~~~~ssqK  185 (349)
T TIGR01364       114 GNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVS-KFGLIYAGAQK  185 (349)
T ss_pred             CCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHH-HccEEEEeccc
Confidence                  2444444  3468999999999999999877     66777899999999999888652222 24599999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHh-------h----hhcCCCCChh-hHHHHHhcCC------cHHHHHHHHHHHHH
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFL-------Q----NAEGSGLAPF-DCWICLRGVK------TMALRVEKQQDNAQ  262 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~-------~----~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~  262 (386)
                      ++ ||+|  .|+++.+++.+.+ +...       .    .....+.++. ..+.+..+++      .+..+.++..+..+
T Consensus       186 ~l-gP~G--lg~l~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~  261 (349)
T TIGR01364       186 NI-GPAG--LTVVIVRKDLLGR-ASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQ  261 (349)
T ss_pred             cc-CCCc--eEEEEECHHHHhh-cccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99 5888  6999998654432 2110       0    0111112222 2222222222      24444455555666


Q ss_pred             HHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC-ceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccc
Q 016612          263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       263 ~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      .+.+.+++.+.   +....           ..+..++ .+++|.+++.....+++..+...|+....|..          
T Consensus       262 ~l~~~l~~~~g---l~~~~-----------~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~----------  317 (349)
T TIGR01364       262 LLYDTIDNSNG---FYRNP-----------VDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHR----------  317 (349)
T ss_pred             HHHHHHHhCCC---eeccC-----------CCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCcc----------
Confidence            66666665531   11110           0011123 56888876543335665666667774444332          


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          342 SHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                                     ..+.||+|+..    ++++.+++.|++.++
T Consensus       318 ---------------~~g~vRvS~~~~nt~edid~l~~al~~~~~  347 (349)
T TIGR01364       318 ---------------SVGGMRASIYNAMPLEGVQALVDFMKEFQK  347 (349)
T ss_pred             ---------------ccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence                           13469999975    555555555555444

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.76  E-value=2.7e-17  Score=152.47  Aligned_cols=274  Identities=18%  Similarity=0.153  Sum_probs=160.5

Q ss_pred             chHHHHHHHHHhhcCCC--c-eEEeCc-HHHHHHH-HHHhcC---CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC
Q 016612           55 PTRDALESLLAKLDKAD--R-ALCFTS-GMAALAA-VTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~-gt~al~~-~~~~~~---~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
                      ...+++++.+++++|.+  + .+++++ ||+++++ +..++.   +||+|++     ..+...+..+++..|++++.++.
T Consensus        44 ~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-----g~~~~~~~~~a~~~g~~~~~~~~  118 (355)
T cd00611          44 AIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-----GAWSAKAAKEAKRYGGVVVIVAA  118 (355)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-----CHHHHHHHHHHHhcCCCcEEEec
Confidence            35788899999999963  3 445545 7799985 455666   5555544     22222233567788988888775


Q ss_pred             C------C-HHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecc
Q 016612          127 C------D-LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (386)
Q Consensus       127 ~------d-~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~  198 (386)
                      +      + ++..+..+++++++|.+++.+|.||...+     ++++.+|+++++|.+++.|+.+ +..+  .++++.|.
T Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~--~~~~~ss~  191 (355)
T cd00611         119 KEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSK--FGVIYAGA  191 (355)
T ss_pred             ccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHH--hCEEEeec
Confidence            3      3 33333456689999999999999999843     4455699999999999998875 2223  34666779


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHh-----------hhhcCCCCCh-hhHHHHHhcCCc------HHHHHHHHHHH
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFL-----------QNAEGSGLAP-FDCWICLRGVKT------MALRVEKQQDN  260 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~  260 (386)
                      +|++ ||+|  .|+++++++.+.+ +...           ......+.++ ...+.+..+++.      +..+.++..+.
T Consensus       192 ~K~l-GP~G--~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l  267 (355)
T cd00611         192 QKNL-GPAG--VTVVIVRKDLLGK-ARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQK  267 (355)
T ss_pred             cccc-CCCc--eEEEEECHHHHhh-cccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9988 6888  6999998654432 2211           0000012222 222332333332      33333444455


Q ss_pred             HHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC-ceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccc
Q 016612          261 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       261 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~  339 (386)
                      ++.+.+.+++.+.    ++...          .++..+. .+++|.+++.....++++.+...|+....|..        
T Consensus       268 ~~~l~~~l~~~~g----l~~~~----------~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~--------  325 (355)
T cd00611         268 AQLLYDTIDNSNG----FYRGP----------VDKRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHR--------  325 (355)
T ss_pred             HHHHHHHHHhCcc----ccccC----------CCHHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCc--------
Confidence            5555555555431    00000          0111133 56889886642223444444445664322221        


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                                       ..+.||+|++..++.+.++.|.++|++
T Consensus       326 -----------------~~g~vR~S~~~~nt~edi~~l~~al~~  352 (355)
T cd00611         326 -----------------SVGGIRASIYNALSLEGVQALADFMKE  352 (355)
T ss_pred             -----------------ccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence                             135699999887777777777777664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PLN02271 serine hydroxymethyltransferase

Probab=99.76  E-value=1e-15  Score=143.88  Aligned_cols=214  Identities=19%  Similarity=0.234  Sum_probs=143.5

Q ss_pred             CCchHHHH----HHHHHhhcCCCc-----eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHh-----hhcccC
Q 016612           53 GNPTRDAL----ESLLAKLDKADR-----ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-----RVTPKT  117 (386)
Q Consensus        53 g~~~~~~l----~~~l~~~~g~~~-----~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~-----~~~~~~  117 (386)
                      |.....++    .++..++||.+.     .+-.-||+.|.. ++.++++|||+|+..+..|+++..+..     ..+...
T Consensus       188 G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~s  267 (586)
T PLN02271        188 GNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGA  267 (586)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccc
Confidence            44444444    355667788652     355568997765 667899999999999888887754321     122445


Q ss_pred             CcEEEEeC--C------CCHHHHHh-hhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          118 GVVVKRVN--T------CDLDEVAS-AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       118 g~~~~~v~--~------~d~~~l~~-~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      |..+..++  .      .|.+++++ +...++++|++.+..+|  ...|+++|.++|+++|+++++|.+|..|.+.    
T Consensus       268 G~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~  345 (586)
T PLN02271        268 SIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKEC  345 (586)
T ss_pred             cceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcC
Confidence            65544443  2      28899998 55689999999888887  7789999999999999999999999877652    


Q ss_pred             -CCCCCCccEEEeccccccccCCCceEEEEEEcCh-------------------hHHHHHHHhhhh---cCCCCChhhHH
Q 016612          185 -RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-------------------RLAKELYFLQNA---EGSGLAPFDCW  241 (386)
Q Consensus       185 -~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~-------------------~~~~~~~~~~~~---~~~~~~~~~~~  241 (386)
                       ++.. ++|++++|+|||+.||.   +|+++++++                   ++.+++.....-   .+.......+.
T Consensus       346 ~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAal  421 (586)
T PLN02271        346 VNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAAL  421 (586)
T ss_pred             CCCCc-CCcEEEeCCcccCCCCC---ceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHH
Confidence             3444 69999999999999886   477777642                   122222221111   11111111111


Q ss_pred             H-HHh--cCCcHHHHHHHHHHHHHHHHHHHhhCC
Q 016612          242 I-CLR--GVKTMALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       242 ~-~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      + .+.  ....+..+..+..+|++.|.+.|.++.
T Consensus       422 Avalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G  455 (586)
T PLN02271        422 AIALKQVATPEYKAYMQQVKKNAQALASALLRRK  455 (586)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            1 011  223456778888999999999998764

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.75  E-value=5.3e-16  Score=146.59  Aligned_cols=283  Identities=17%  Similarity=0.248  Sum_probs=173.1

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhc----------CC-CCEEEecCCCCCc-HHHHHhhhcc-----
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL----------GT-GEEIVAGDDLYGG-TDRLLSRVTP-----  115 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~----------~~-g~~Vlv~~~~~~~-~~~~~~~~~~-----  115 (386)
                      ..+...++++.+++++|.+..++++||++|+..++.+.          .+ .+.|+..+..|++ +...+ ....     
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~-~~~~~~~~~  155 (401)
T TIGR01885        77 YNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAI-SMSTDPDSR  155 (401)
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHH-hCcCCcccc
Confidence            34578889999999999888999999999876433321          12 4566667777665 33322 1111     


Q ss_pred             -cCC---cEEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCc
Q 016612          116 -KTG---VVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVL  183 (386)
Q Consensus       116 -~~g---~~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~  183 (386)
                       .++   ..+..++..|++++++.++   +++.+|+++.+++++|.+.+    +++|.++|++||+++|+||++.. +..
T Consensus       156 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~  235 (401)
T TIGR01885       156 TNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRT  235 (401)
T ss_pred             cccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence             112   2345566778999998875   56789999999999999986    99999999999999999999742 211


Q ss_pred             c-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHH
Q 016612          184 S-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ  258 (386)
Q Consensus       184 ~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (386)
                      .     .......|+++  ++|.+++ ++.++|+++++ +++.+.+.........+.++..+.++...++.+..  +...
T Consensus       236 G~~~~~~~~~~~~di~~--~gK~l~~-g~~~ig~v~~~-~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~--~~l~  309 (401)
T TIGR01885       236 GKLLCVDHENVKPDIVL--LGKALSG-GVYPVSAVLAD-DDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEE--EKLA  309 (401)
T ss_pred             chhhHHhhcCCCCCEEE--eeccccC-CCCCcEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHH
Confidence            1     11223567775  5799964 44678999886 55655443211211223345555555555543322  1222


Q ss_pred             HHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH---HhHHHHHhhcCcceeccCCCCccccc
Q 016612          259 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---ALSKHVVETTKYFSITVSFGSVKSLI  335 (386)
Q Consensus       259 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~gi~~~~G~~~~~~  335 (386)
                      ++.+.+.+++.+.          |.++. ..+. ...++.|.++.+.+++.   ....++.+.+..+|+.+.++      
T Consensus       310 ~~~~~~~~~~~~~----------L~~l~-~~~~-~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~------  371 (401)
T TIGR01885       310 ENAEKLGEIFRDQ----------LKKLP-KPII-TEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPT------  371 (401)
T ss_pred             HHHHHHHHHHHHH----------HHhcc-CCce-eEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEec------
Confidence            3333333333321          11100 0010 11245678888777543   24677888888788865432      


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  381 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  381 (386)
                                           .++.+|+++..    ++++++++.|+++|
T Consensus       372 ---------------------~~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       372 ---------------------HGNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             ---------------------CCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence                                 13459999753    66666666666654

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.75  E-value=1.8e-16  Score=148.56  Aligned_cols=321  Identities=17%  Similarity=0.188  Sum_probs=183.8

Q ss_pred             eeeccCC--CCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh
Q 016612           12 LLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL   89 (386)
Q Consensus        12 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~   89 (386)
                      +.+++..  ++.++|..+|.+.++.......    ....+....++...++.+.+.+..+.+..++++||++|+..++.+
T Consensus        37 ~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~  112 (395)
T PRK03715         37 RYLDFIQGWAVNCLGHCNPGMVEALAAQAEK----LINPSPAFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKL  112 (395)
T ss_pred             EEEECCcChhhccCCCCCHHHHHHHHHHHHh----cccccccccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHH
Confidence            4555543  3788998887766643222111    111111112345667777777766667889999999998644332


Q ss_pred             c-------CCC-CEEEecCCCCCcH-HHHHhhhcccCC---------cEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCC
Q 016612           90 L-------GTG-EEIVAGDDLYGGT-DRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (386)
Q Consensus        90 ~-------~~g-~~Vlv~~~~~~~~-~~~~~~~~~~~g---------~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~np  151 (386)
                      .       ++| ++|++.+..|++. ...+ .......         ..+..++..|++++++.+.+++++|+++..++.
T Consensus       113 ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~  191 (395)
T PRK03715        113 ARKWGRKHKNGAYEIITFDHSFHGRTLATM-SASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQGE  191 (395)
T ss_pred             HHHHhhccCCCCcEEEEECCCcCCChHHHH-hhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCcCC
Confidence            2       123 5677777666554 3222 1111110         112333446899999999888999999999998


Q ss_pred             Cccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHH
Q 016612          152 RQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (386)
Q Consensus       152 tG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~  221 (386)
                      .|.+.|    +++|.++|++||+++|+||+++. |-..     ......+|++  +++|.+++  |+.+|.++++++ +.
T Consensus       192 gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~--t~gK~lg~--G~p~~av~~~~~-i~  266 (395)
T PRK03715        192 GGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIM--TLGKGIGG--GVPLAALLAKAE-VA  266 (395)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCcee--eehhhhhC--CcceEEEEEccc-cc
Confidence            888876    99999999999999999999862 1111     1123356876  46899975  355777777644 43


Q ss_pred             HHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCce
Q 016612          222 KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  301 (386)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~  301 (386)
                      . +..-......+.++...++.+..++.+..  +...++.+.+.+++.+.-.  ++.    ... ++    ...++.|.+
T Consensus       267 ~-~~~~~~~~T~~g~pl~~aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~--~l~----~~~-~i----~~vrG~Glm  332 (395)
T PRK03715        267 V-FEAGDQGGTYNGNPLMTAVGVAVISQLLA--PGFLEGVRARGEYLKEKLL--ELS----EER-GL----EGERGEGLL  332 (395)
T ss_pred             c-ccCCCcCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH--HHh----hcC-Cc----CeEEcceeE
Confidence            2 11111111223456666666665554431  2344444444444443110  000    011 11    112567899


Q ss_pred             EEEEeCCH--HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHH
Q 016612          302 LSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLIS  375 (386)
Q Consensus       302 ~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~  375 (386)
                      +.+.+.+.  ....+...++...|+.+...                           ..+.+|+++..    ++++++++
T Consensus       333 ~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~---------------------------~~~~lR~~p~l~~t~~ei~~~~~  385 (395)
T PRK03715        333 RALLLGKDIGPQIVEKARDMQPDGLLLNAP---------------------------RPNLLRFMPALNVTTEEIDQMIA  385 (395)
T ss_pred             EEEEecCchHHHHHHHHHhccCCCEEEeec---------------------------CCCEEEEeCCcccCHHHHHHHHH
Confidence            99998653  12223333333336643210                           12349999864    77778888


Q ss_pred             HHHHHHhc
Q 016612          376 DLDKALRT  383 (386)
Q Consensus       376 ~l~~~l~~  383 (386)
                      .|.+++++
T Consensus       386 ~l~~~l~~  393 (395)
T PRK03715        386 MLRSVLDK  393 (395)
T ss_pred             HHHHHHHh
Confidence            88887765

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.75  E-value=1.1e-16  Score=148.24  Aligned_cols=274  Identities=16%  Similarity=0.128  Sum_probs=168.8

Q ss_pred             chHHHHHHHHHhhcCC-C--ceEEe-CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           55 PTRDALESLLAKLDKA-D--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~-~--~~i~~-~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      .+.+++++.++++++. +  +.+++ ++|+.++. ++..++.+|+++++...+..+.  .|..+++..|.. ..+...  
T Consensus        48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~--r~~~~a~~~g~~-~~~~~~~~  124 (360)
T PRK05355         48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSK--KAIKEAKKYGEV-NVAASSED  124 (360)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHH--HHHHHHHHhCCc-eEEecccc
Confidence            4688899999999995 3  34444 45568887 5567899999988765544433  345778888865 333221  


Q ss_pred             ----CHHHHHh-hhCCCceEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccc
Q 016612          128 ----DLDEVAS-AIGPWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (386)
Q Consensus       128 ----d~~~l~~-~~~~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~  201 (386)
                          +..++++ .+++++++|.++|..+.||... |+++|      +|+++++|.+++.|+.+-..+ +.|++++|.+|+
T Consensus       125 ~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~-~~d~~~~ssqK~  197 (360)
T PRK05355        125 DGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVS-KFGLIYAGAQKN  197 (360)
T ss_pred             cCCCCCCChhhccCCCCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHH-HccEEEEecccc
Confidence                3334444 6777899999999999999998 77766      899999999999887652222 246999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHH-h----------hhhcCCCCCh-hhHHHHHhcCC------cHHHHHHHHHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYF-L----------QNAEGSGLAP-FDCWICLRGVK------TMALRVEKQQDNAQK  263 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~-~----------~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~  263 (386)
                      + ||+|  .|+++++++.+.+ +.. .          ......+.++ ...+.+..+++      .+..+.++..+.++.
T Consensus       198 l-gP~G--lg~l~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~  273 (360)
T PRK05355        198 I-GPAG--LTIVIVREDLLGR-ALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAAL  273 (360)
T ss_pred             c-cCCc--eEEEEECHHHHhh-cccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            8 5888  6999998654432 222 1          1011112222 22222222222      234444555566666


Q ss_pred             HHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC-CceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccccccc
Q 016612          264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS  342 (386)
Q Consensus       264 l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~  342 (386)
                      +.+.+++.+     ++..+.          .+..+ ..+++|.+++......++..+...|+.+..|..           
T Consensus       274 l~~~l~~~~-----~~~~~~----------~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~-----------  327 (360)
T PRK05355        274 LYDAIDSSD-----FYRNPV----------APEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHR-----------  327 (360)
T ss_pred             HHHHHHhCC-----CcccCC----------ChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCC-----------
Confidence            666666553     110000          00112 356888887754445665666666775433321           


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          343 HASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                                    ..+.||+|+..    ++++.+++.|++.++
T Consensus       328 --------------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~  357 (360)
T PRK05355        328 --------------SVGGMRASIYNAMPLEGVQALVDFMKEFER  357 (360)
T ss_pred             --------------ccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                          13569999975    555666666655554

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.74  E-value=9.1e-17  Score=148.95  Aligned_cols=158  Identities=12%  Similarity=0.042  Sum_probs=109.5

Q ss_pred             chHHHHHHHHHhhcCCC--c-eEEe-CcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCH
Q 016612           55 PTRDALESLLAKLDKAD--R-ALCF-TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL  129 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~-~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~  129 (386)
                      ...+++++.++++++.+  . .+++ +|||.++++ +..++.+ +.+++....|+.....+.......+ ++..++....
T Consensus        41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~  118 (361)
T TIGR01366        41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPG  118 (361)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccC-CceEEecCCC
Confidence            46888999999999973  2 4444 447899985 4455543 3344555566544433322221123 4455544333


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCce
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM  209 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~  209 (386)
                      +.++..+++++++|.++|.+|.||.+.|+++|   ++++|+++++|.+++.|+.+-..+ ..|++++|.+|++++|+|  
T Consensus       119 ~~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~-~~D~~~~s~~K~lg~~~G--  192 (361)
T TIGR01366       119 SAPEPQADPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIA-ETDVYYFAPQKNFASDGG--  192 (361)
T ss_pred             CCCCCccCCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHH-HCCEEEEEchhhcCCCCc--
Confidence            34444566799999999999999999999888   588999999999999988753333 389999999999988776  


Q ss_pred             EEEEEEcChhH
Q 016612          210 AGVLAVKGERL  220 (386)
Q Consensus       210 ~G~i~~~~~~~  220 (386)
                      .++++.+++.+
T Consensus       193 l~~~~~s~~~~  203 (361)
T TIGR01366       193 LWLAIMSPAAL  203 (361)
T ss_pred             eEEEEECHHHH
Confidence            56667775544

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.74  E-value=9.9e-16  Score=141.40  Aligned_cols=292  Identities=16%  Similarity=0.144  Sum_probs=184.5

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH-hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-----
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----  126 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~-~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----  126 (386)
                      |+|...++++.+++++|.+..+.+++|+.|++++.. .++|||.|  +.+.|..+..   ...+..|..++.++.     
T Consensus        69 g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~---ahIe~~Gav~vDi~~dea~~  143 (450)
T TIGR02618        69 GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTR---YHQEKNGATFVDIIIDEAHD  143 (450)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHH---HHHHhCCeEEEeeecccccc
Confidence            667899999999999999999999999999875544 58999976  6677755543   223456665555521     


Q ss_pred             ----------CCHHHHHhhhCC----CceEEEEeCCCCCC-cccc---cHHHHHHHHHHcCCEEEEeCCCCCC--Cc---
Q 016612          127 ----------CDLDEVASAIGP----WTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMSP--VL---  183 (386)
Q Consensus       127 ----------~d~~~l~~~~~~----~~~~v~~~~~~npt-G~~~---~l~~i~~la~~~~~~li~D~a~~~~--~~---  183 (386)
                                .|++++++.+++    ++++|.+++++|.. |...   ++++|.++|++||+.||.|.++..+  .+   
T Consensus       144 ~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~  223 (450)
T TIGR02618       144 AQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKE  223 (450)
T ss_pred             cccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhc
Confidence                      189999999974    45578888888865 6774   5899999999999999999998652  22   


Q ss_pred             ------cCCC-------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCC-----CCChhhHHHHHh
Q 016612          184 ------SRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-----GLAPFDCWICLR  245 (386)
Q Consensus       184 ------~~~~-------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  245 (386)
                            ..+.       ...+|.+++|+.|..++|-   +|+++.+++++.++.+.+....+.     +++.....++..
T Consensus       224 re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~---GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~  300 (450)
T TIGR02618       224 REQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNI---GGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAI  300 (450)
T ss_pred             ccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCC---ceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHH
Confidence                  1111       1258999999999997765   699998888888877666433221     223322222222


Q ss_pred             cCCcH--HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE------------eCCHHh
Q 016612          246 GVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL------------TGSLAL  311 (386)
Q Consensus       246 ~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~------------~~~~~~  311 (386)
                      +++..  ....+....+++.|.+.|.+.. +     +-....            .|..+.+.            ++....
T Consensus       301 gL~e~~~~~y~~~r~~~a~~La~~L~~~G-v-----pv~~p~------------ggh~V~vda~~~lph~~~~~~p~~al  362 (450)
T TIGR02618       301 GIREAVDYEYIEHRVKQVRYLGDKLKAAG-V-----PIVEPV------------GGHAVFLDARRFLPHIPQDQFPAQSL  362 (450)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHCC-C-----cccCCC------------CcceEEEEhHHhCCCCChhhChHHHH
Confidence            33222  1233344456778888887652 1     111111            12333332            234556


Q ss_pred             HHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-----cCChHHHHHHHHHHHhc
Q 016612          312 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       312 ~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i~~l~~~l~~  383 (386)
                      +..++.+.+++++-...-..   -..|-.....          ...-.++|+.+.     ..+++...+.+....++
T Consensus       363 ~~~ly~~~gir~~e~g~~~~---~~~~~~~~~~----------~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       363 AASIYVETGVRSMERGIVSA---GRNNVTGEHH----------RPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH  426 (450)
T ss_pred             HHHHHHHhCccEEeecceec---ccCCCCCccc----------CCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence            66777777777664221000   0011110000          001367999985     47888888888776654

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.72  E-value=4.2e-15  Score=137.66  Aligned_cols=301  Identities=17%  Similarity=0.147  Sum_probs=184.1

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH-hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC------
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------  125 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~-~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~------  125 (386)
                      |+|...++++.+++++|.+..+.+++||.|++++.. .++|||.|  +...|..+...   .....|..++-++      
T Consensus        76 gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~a---hI~~~Ga~fvDi~~d~a~~  150 (460)
T PRK13237         76 GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRY---HQELNGGIFVDIIIDEAHD  150 (460)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHH---HHHhCCcEEEeeecccccc
Confidence            557889999999999999999999999999876544 57899964  55555544322   1245555444331      


Q ss_pred             ------C---CCHHHHHhhhCC----CceEEEEeCCCCCCc-ccc---cHHHHHHHHHHcCCEEEEeCCCCCCC---c--
Q 016612          126 ------T---CDLDEVASAIGP----WTKLVWVESPTNPRQ-QIC---DIRKIAEMAHAHGALLLVDNSIMSPV---L--  183 (386)
Q Consensus       126 ------~---~d~~~l~~~~~~----~~~~v~~~~~~nptG-~~~---~l~~i~~la~~~~~~li~D~a~~~~~---~--  183 (386)
                            .   .|++++++.+++    +++++.+..++|..| ...   ++++|.++|++||+.||+|.++..+.   +  
T Consensus       151 ~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~  230 (460)
T PRK13237        151 AQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKE  230 (460)
T ss_pred             cccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcc
Confidence                  1   289999999874    345677777888774 444   68999999999999999999987551   1  


Q ss_pred             ------cCCC-------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhc-C----CCCChhhHHHHHh
Q 016612          184 ------SRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G----SGLAPFDCWICLR  245 (386)
Q Consensus       184 ------~~~~-------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~  245 (386)
                            ..+.       ....|.+++|++|.+.++.   +|+++++++++.++.+.+.... |    .+++.-...++..
T Consensus       231 re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~---GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAv  307 (460)
T PRK13237        231 REEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI---GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAI  307 (460)
T ss_pred             cccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC---ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHh
Confidence                  1111       1257999999999997754   6999999999988877664332 1    1332312222222


Q ss_pred             cCCc-H-HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcce
Q 016612          246 GVKT-M-ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  323 (386)
Q Consensus       246 ~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g  323 (386)
                      ++.. . .....+..++++.|.+.|.+..-  .+.    ....||.++.+-.+-...+-.-.++....+..++.+.++++
T Consensus       308 gl~E~~~~~y~~~ri~~~~~l~~~L~~~Gv--pv~----~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~  381 (460)
T PRK13237        308 GIEESVQYEYIEHRVGQVRYLGEKLLAAGV--PIV----EPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRS  381 (460)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHCCC--cee----cCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCe
Confidence            2221 1 24455666778888888876531  111    11222322211100000011112344566777788877777


Q ss_pred             ecc---CCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-----cCChHHHHHHHHHHHhc
Q 016612          324 ITV---SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       324 i~~---~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i~~l~~~l~~  383 (386)
                      +-.   ..|.      .|-.....          ..+-.++|+.+.     ..+++...+.+....++
T Consensus       382 ~e~g~~~~~~------~~~~~~~~----------~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        382 MERGIVSAGR------DPKTGENH----------YPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             Eeecceeccc------CCCCCccC----------CCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence            632   1111      11110000          001367999985     47888888888776654

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.72  E-value=1.5e-16  Score=146.39  Aligned_cols=157  Identities=27%  Similarity=0.375  Sum_probs=120.8

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ...+.++.+++.||++...++++|| .++. +++++++|||.|++++.+|-+..+.    +...|+.++++++.      
T Consensus        67 ~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~a----lil~ga~Pvyi~p~~~~~gi  142 (417)
T PF01276_consen   67 IIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNA----LILSGAIPVYIPPEDNEYGI  142 (417)
T ss_dssp             HHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHH----HHHHTEEEEEEEEEE-TTS-
T ss_pred             HHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHH----HHHcCCeEEEecCCccccCC
Confidence            6889999999999999888888887 6665 6788999999999999999888643    34677888877652      


Q ss_pred             ----CH-----HHHHhhhC--CCce---EEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC-----ccCCCC
Q 016612          128 ----DL-----DEVASAIG--PWTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LSRPLE  188 (386)
Q Consensus       128 ----d~-----~~l~~~~~--~~~~---~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~-----~~~~~~  188 (386)
                          ++     ++++++++  +..+   ++++++|++ .|.+.|+++|+++|++++++|++||||+.-.     ..+...
T Consensus       143 ~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~  221 (417)
T PF01276_consen  143 IGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALA  221 (417)
T ss_dssp             BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSS
T ss_pred             ccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhh
Confidence                44     88888886  3444   499999988 6999999999999999999999999987421     113345


Q ss_pred             CCcc-------EEEeccccccccCCCceEEEEEEcChh
Q 016612          189 LGAD-------IVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       189 ~~~d-------i~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      .++|       +++.|.||.+.+...  .+++..++..
T Consensus       222 ~gad~~~~~~~~vvqS~HKtL~altQ--ts~lh~~~~~  257 (417)
T PF01276_consen  222 LGADRPNDPGIIVVQSTHKTLPALTQ--TSMLHVKGDR  257 (417)
T ss_dssp             TTSS-CTSBEEEEEEEHHHHSSS-TT---EEEEEETCC
T ss_pred             ccCccccccceeeeechhhccccccc--ceEEEecCCC
Confidence            6889       999999999987765  8898888764

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.71  E-value=5.4e-15  Score=140.90  Aligned_cols=289  Identities=20%  Similarity=0.177  Sum_probs=165.9

Q ss_pred             CCchHHHHHH----HHHhhcCCC-ceEEe----CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHH--hhhcc--cCC
Q 016612           53 GNPTRDALES----LLAKLDKAD-RALCF----TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLL--SRVTP--KTG  118 (386)
Q Consensus        53 g~~~~~~l~~----~l~~~~g~~-~~i~~----~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~--~~~~~--~~g  118 (386)
                      |....+++++    ...+.++.+ ..+.+    .||+.|.. ++.++++|||.|++.+..++++..+.  ....+  ..+
T Consensus        74 G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~  153 (475)
T PLN03226         74 GNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATS  153 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccce
Confidence            5555666665    455566765 44444    88997765 77889999999998554333332210  01111  122


Q ss_pred             cEEE--EeCCC------CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-----
Q 016612          119 VVVK--RVNTC------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----  184 (386)
Q Consensus       119 ~~~~--~v~~~------d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-----  184 (386)
                      ..+.  .+..+      |++++++.+. .++++|++. .++ +|...|+++|.++|+++|+++++|++|+.|...     
T Consensus       154 ~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~  231 (475)
T PLN03226        154 IYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG-ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAA  231 (475)
T ss_pred             EEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC
Confidence            1111  22222      9999999886 577776653 333 678889999999999999999999999887654     


Q ss_pred             CCCCCCccEEEeccccccccCCCceEEEEEEcChhH-------------HHHHHHhh-hhcCCCCChhhHHHHHhcCCc-
Q 016612          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-------------AKELYFLQ-NAEGSGLAPFDCWICLRGVKT-  249 (386)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~-------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-  249 (386)
                      .+.. ++|++++|+||++.||.   +|++++++...             .+...... .....+.+....+++..+++. 
T Consensus       232 ~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i  307 (475)
T PLN03226        232 SPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA  307 (475)
T ss_pred             CCCC-CCeEEEecCcccccCCC---ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH
Confidence            2232 78999999999998776   58888865321             11111110 111223333333333333322 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhcCccee
Q 016612          250 ----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSI  324 (386)
Q Consensus       250 ----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~gi  324 (386)
                          ...+.++..++++.+.+.+.+.. + .+...+               ....++.+.+. ......++.+.|...++
T Consensus       308 ~~~~~~~~~~~~~~na~~L~~~L~~~G-~-~l~~~~---------------t~~hi~lv~~~~~gi~~~~~~~~L~~~~I  370 (475)
T PLN03226        308 MTPEFKAYQKQVKANAAALANRLMSKG-Y-KLVTGG---------------TDNHLVLWDLRPLGLTGSRVEKVLDLAHI  370 (475)
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHHhCC-C-EEEcCC---------------CCCCEEEEEccCCCCCHHHHHHHHHHCCC
Confidence                33456777788888888777632 1 111111               01345555542 11123344455555566


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe--------ccCChHHHHHHHHHHHh
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--------GIEDVNDLISDLDKALR  382 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--------~~~~~~~~i~~l~~~l~  382 (386)
                      .++.+..      |.. .           ....++.||++.        +.++++++.+.|.++++
T Consensus       371 ~~nk~~~------p~~-~-----------~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        371 TLNKNAV------PGD-S-----------SALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             EECCCCC------CCC-c-----------ccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            5554321      100 0           011234477754        34778888888888886

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.71  E-value=3.8e-16  Score=148.27  Aligned_cols=289  Identities=13%  Similarity=0.148  Sum_probs=166.4

Q ss_pred             CCchHHHHHHHHHhhcCC---CceEEeCcHHHHHHH-H---HHhcCCCCEEEecCCCCCcHHHHHhhhccc-----CC--
Q 016612           53 GNPTRDALESLLAKLDKA---DRALCFTSGMAALAA-V---THLLGTGEEIVAGDDLYGGTDRLLSRVTPK-----TG--  118 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~-~---~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-----~g--  118 (386)
                      +++...++.+.+.+..+.   +..++++||++|+.. +   ....++ ..|++-+++|++........-..     .+  
T Consensus        82 ~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~  160 (425)
T PRK08088         82 AYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKR-SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG  160 (425)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCC-CeEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence            455556777778777654   367889999987753 2   223344 45565578777764332221110     01  


Q ss_pred             -----cEEEEeCCC--------CHHHHHhhhC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeC
Q 016612          119 -----VVVKRVNTC--------DLDEVASAIG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDN  176 (386)
Q Consensus       119 -----~~~~~v~~~--------d~~~l~~~~~-----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~  176 (386)
                           .....++..        +++++++.+.     +++++|+++......|.+.+    +++|.++|+++|+++|+||
T Consensus       161 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~De  240 (425)
T PRK08088        161 LMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADE  240 (425)
T ss_pred             CCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence                 111112211        1456777664     56789999877666676654    8999999999999999999


Q ss_pred             CCCC-CCccCC---CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH
Q 016612          177 SIMS-PVLSRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL  252 (386)
Q Consensus       177 a~~~-~~~~~~---~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (386)
                      +++. +.....   ...+.+.-+.|+||.++  +|+|+|+++++ +++.+.+...........++..+.++...++....
T Consensus       241 v~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~--~G~rig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~  317 (425)
T PRK08088        241 VQTGAGRTGTLFAMEQMGVAADLTTFAKSIA--GGFPLAGVTGR-AEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ  317 (425)
T ss_pred             cccCCCcCcchhHHhhcCCCCCEEEEecccc--CCCcceeeEec-HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence            9873 111111   11233344678999995  36899999996 45655554433333445566666666555443211


Q ss_pred             --HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--------CHHhHHHHHhhcCcc
Q 016612          253 --RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYF  322 (386)
Q Consensus       253 --~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~  322 (386)
                        ..+...+..+.+.+.+.+..          ...+.    ....++.|.++++.+.        +......+.+.+...
T Consensus       318 ~~~~~~~~~~~~~~~~~l~~l~----------~~~~~----~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~  383 (425)
T PRK08088        318 ENLLQKANALGEKLKDGLLAIA----------EKHPE----IGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDK  383 (425)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHH----------HhCCC----eEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhC
Confidence              11122222222222222210          11111    0112455888898872        234467788888777


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                      |+...++..                         ..+.||++++.    +++++.++.|.+++++.
T Consensus       384 Gv~~~~~~~-------------------------~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        384 GLILLSCGP-------------------------YYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             CCEEecCCC-------------------------CCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence            865432211                         13559999873    77788888888888653

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.71  E-value=8.8e-16  Score=146.11  Aligned_cols=311  Identities=14%  Similarity=0.115  Sum_probs=179.7

Q ss_pred             CCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC-CceEEeCcHHHHHHHHHH---hcCCCCEE
Q 016612           21 DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA-DRALCFTSGMAALAAVTH---LLGTGEEI   96 (386)
Q Consensus        21 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~-~~~i~~~~gt~al~~~~~---~~~~g~~V   96 (386)
                      ..+|..+|.+.++.....   .. .. .|. ..++...++.+.+++++.. +..++++||++|+.+.+.   ....+++|
T Consensus        60 ~~lGh~~p~v~~ai~~q~---~~-~~-~~~-~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~i  133 (423)
T TIGR00713        60 LILGHAHPRVVEAVKEAL---ER-GT-SYG-APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKI  133 (423)
T ss_pred             cccCCCCHHHHHHHHHHH---Hh-CC-cCC-CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEE
Confidence            336777777665432211   11 11 121 1234567788888887653 478888999999864333   23456899


Q ss_pred             EecCCCCCcHHHHHhhh----------------cccCCcEEEEeCCCCHHHHHhhhC---CCceEEEEe-CCCCCCcccc
Q 016612           97 VAGDDLYGGTDRLLSRV----------------TPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVE-SPTNPRQQIC  156 (386)
Q Consensus        97 lv~~~~~~~~~~~~~~~----------------~~~~g~~~~~v~~~d~~~l~~~~~---~~~~~v~~~-~~~nptG~~~  156 (386)
                      ++.++.|++........                ....+.....++..|++++++.++   +++++|+++ .++| +|.+.
T Consensus       134 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~  212 (423)
T TIGR00713       134 IKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVP  212 (423)
T ss_pred             EEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcC
Confidence            99999998864221110                000111234455568999998886   578899997 6666 78887


Q ss_pred             c----HHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh
Q 016612          157 D----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (386)
Q Consensus       157 ~----l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~  227 (386)
                      +    +++|.++|++||+++|+||+|......     .......|++  ++||.++  +|+++|+++++ +++.+.+...
T Consensus       213 ~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~--~G~pig~v~~~-~~i~~~~~~~  287 (423)
T TIGR00713       213 PKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIG--GGLPVGAFGGR-REIMERLAPE  287 (423)
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhc--CCCceeeeeEH-HHHHHhhCcC
Confidence            5    789999999999999999998532211     1112345654  6899995  46899999987 4565555321


Q ss_pred             ---hhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceE
Q 016612          228 ---QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  302 (386)
Q Consensus       228 ---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  302 (386)
                         ......+.++..++++...++.+..  ..+...+..+.+.+.+.+.          ++.++ ..   ...++.|.++
T Consensus       288 ~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~-~~---~~v~~~g~~~  353 (423)
T TIGR00713       288 GPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEV----------LEDTG-IP---HTVNRVGSMF  353 (423)
T ss_pred             CCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH----------HHhcC-CC---eEEEeeccEE
Confidence               1112234566666665555443221  1223333333333333321          00000 00   0113456777


Q ss_pred             EEEeCC-------------HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe--cc
Q 016612          303 SFLTGS-------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--GI  367 (386)
Q Consensus       303 ~~~~~~-------------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--~~  367 (386)
                      .+.+..             ......+.+.+..+|+.+..+.                           .+.+|+++  +.
T Consensus       354 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------~~~~~l~~~~t~  406 (423)
T TIGR00713       354 SLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQ---------------------------FEACFLSAAHTE  406 (423)
T ss_pred             EEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCC---------------------------ccceeeECCCCH
Confidence            765531             1123456666666777654321                           11267776  45


Q ss_pred             CChHHHHHHHHHHHhcC
Q 016612          368 EDVNDLISDLDKALRTG  384 (386)
Q Consensus       368 ~~~~~~i~~l~~~l~~~  384 (386)
                      ++++++++.|.++|+++
T Consensus       407 ~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       407 EDIENTIEAAEEVFAEL  423 (423)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            88899999999888753

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.71  E-value=2.1e-16  Score=150.38  Aligned_cols=319  Identities=17%  Similarity=0.143  Sum_probs=178.8

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-C-CceEEeCcHHHHHHHHHHh---cCCCC
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-A-DRALCFTSGMAALAAVTHL---LGTGE   94 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~-~~~i~~~~gt~al~~~~~~---~~~g~   94 (386)
                      +..+|..+|.+.++.......   ......+...++...++.+.|+++++ . +..++++||++|..+.+.+   .....
T Consensus        54 ~~~lGh~~p~v~~a~~~q~~~---~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~  130 (433)
T PRK08117         54 VANVGHRHPKVVQAIKEQADK---LMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRP  130 (433)
T ss_pred             hccCCCCCHHHHHHHHHHHHh---ccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCC
Confidence            556787777766642222111   11111111234677888899999873 2 3556668999998643332   33345


Q ss_pred             EEEecCCCCCcH-HHHHhhhcc-------cCC---cEEEEeCCC-----------------CHHHHHhhhC-----CCce
Q 016612           95 EIVAGDDLYGGT-DRLLSRVTP-------KTG---VVVKRVNTC-----------------DLDEVASAIG-----PWTK  141 (386)
Q Consensus        95 ~Vlv~~~~~~~~-~~~~~~~~~-------~~g---~~~~~v~~~-----------------d~~~l~~~~~-----~~~~  141 (386)
                      +|+.-+..|++. ...+ .+..       .+.   ..+..++..                 +++++++.++     +++.
T Consensus       131 ~ii~~~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a  209 (433)
T PRK08117        131 YIISFTGCFHGRTLGAL-SVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVA  209 (433)
T ss_pred             eEEEECCCcCCcCHHHH-hhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEE
Confidence            677666666554 2221 1110       000   011222211                 4455665542     4688


Q ss_pred             EEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCccCC-----CCCCccEEEeccccccccCCCceEE
Q 016612          142 LVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAG  211 (386)
Q Consensus       142 ~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~~~-----~~~~~di~~~S~sK~~~g~~g~~~G  211 (386)
                      +|+++......|.+.+    +++|.++|++||+++|+||+++. +.....     .....|+  .+++|.++  +|+++|
T Consensus       210 avi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi--~t~sK~lg--~G~pig  285 (433)
T PRK08117        210 AVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDI--MTIAKGIA--SGLPLS  285 (433)
T ss_pred             EEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCE--eehhhhcc--CCCcce
Confidence            9999999888899887    99999999999999999999873 111111     1223465  57899995  368899


Q ss_pred             EEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhh
Q 016612          212 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  291 (386)
Q Consensus       212 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~  291 (386)
                      +++++ +++.+.+.........+.++...++....++.+..  +.+.++.+.+.+++++.-.  . +.   ..++   + 
T Consensus       286 av~~~-~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~--~-l~---~~~~---~-  352 (433)
T PRK08117        286 AVVAS-KELMEQWPLGSHGTTFGGNPVACAAALATLEVIKE--EKLLDNANEMGAYALERLE--V-LK---EKHP---V-  352 (433)
T ss_pred             eEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH--H-HH---hcCC---c-
Confidence            99887 45555443222222234466666666665553321  2333444444444432110  0 00   0010   0 


Q ss_pred             hhccCCCCceEEEEeC------CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 016612          292 YSQAKGAGSVLSFLTG------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  365 (386)
Q Consensus       292 ~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  365 (386)
                      ..+.++.|.++.+.+.      +......+.+.+...|+...+..                         ...+++|+++
T Consensus       353 ~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g-------------------------~~~~~lRl~p  407 (433)
T PRK08117        353 IGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCG-------------------------NAGNVLRMIP  407 (433)
T ss_pred             eeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecC-------------------------CCCCEEEEeC
Confidence            0122556777777772      23345667777777777543211                         1235699996


Q ss_pred             c----cCChHHHHHHHHHHHhcC
Q 016612          366 G----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       366 ~----~~~~~~~i~~l~~~l~~~  384 (386)
                      +    .+++++.++.|.++++++
T Consensus       408 ~~~~t~~~i~~~~~~l~~~l~~~  430 (433)
T PRK08117        408 PLTVTKEEIDEGLDILDEALTEY  430 (433)
T ss_pred             CccCCHHHHHHHHHHHHHHHHHH
Confidence            4    488888888888888653

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.71  E-value=5.9e-16  Score=145.48  Aligned_cols=286  Identities=15%  Similarity=0.178  Sum_probs=167.6

Q ss_pred             CchHHHHHHHHHhhcCC-CceEEeCcHHHHHHHHHHh---c----C--C-CCEEEecCCCCCcHHHHHhhhc------cc
Q 016612           54 NPTRDALESLLAKLDKA-DRALCFTSGMAALAAVTHL---L----G--T-GEEIVAGDDLYGGTDRLLSRVT------PK  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~-~~~i~~~~gt~al~~~~~~---~----~--~-g~~Vlv~~~~~~~~~~~~~~~~------~~  116 (386)
                      ++...++.+.|.+..+. +...+++||++|+.+.+.+   .    .  + ..+|+.-...|++.........      ..
T Consensus        81 ~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~  160 (408)
T PRK04612         81 SAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEG  160 (408)
T ss_pred             CHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccC
Confidence            34455666666666533 5688889999998633321   1    1  1 2468877777766532211111      00


Q ss_pred             C---CcEEEEeCCCCHHHHHhhhCC-CceEEEEeCCCCCCccccc-----HHHHHHHHHHcCCEEEEeCCCCC-CCccC-
Q 016612          117 T---GVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICD-----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-  185 (386)
Q Consensus       117 ~---g~~~~~v~~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~-----l~~i~~la~~~~~~li~D~a~~~-~~~~~-  185 (386)
                      +   ...+..++..|++.+++.+.+ ++.+++++. .+++|.+.+     +++|.++|++||+++|+||++.. +.... 
T Consensus       161 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP-~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~  239 (408)
T PRK04612        161 YEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEP-IQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTL  239 (408)
T ss_pred             CCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCch
Confidence            1   112455666799999988864 455555554 455565532     89999999999999999999862 22111 


Q ss_pred             --CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHH
Q 016612          186 --PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK  263 (386)
Q Consensus       186 --~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (386)
                        ....+.+..+.+++|.+++  |+++|++++++ ++.+.+...........++..+.++...++.+..  +...++++.
T Consensus       240 ~a~~~~~~~pdi~t~~K~l~~--G~piga~~~~~-~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~--~~l~~~~~~  314 (408)
T PRK04612        240 FAHWQEQVTPDIVTLAKALGG--GFPIGAMLAGP-KVAETMQFGAHGTTFGGNPLAAAVARVALRKLAS--PQIAANVAR  314 (408)
T ss_pred             hhhhhcCCCCCEEEEcchhcC--CCceEEEEECH-HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHH
Confidence              1122444555678999953  68899998874 4555443322222334566667666666554322  234444444


Q ss_pred             HHHHHhhCC-CcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          264 IAEFLASHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       264 l~~~l~~~~-~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      +.+++.+.- .+.. .++.+          .+.++.|.++.+.+..  ......+.+.+..+|+.+.+.           
T Consensus       315 ~g~~l~~~l~~l~~-~~~~i----------~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~-----------  372 (408)
T PRK04612        315 QSAALRAGLEALNA-EFGVF----------AQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQA-----------  372 (408)
T ss_pred             HHHHHHHHHHHHHh-hCCCe----------eeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeC-----------
Confidence            444443311 0000 00111          1236778889988742  334667777887888765321           


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                      +.+.+|+.+.    .+++++.++.++++|++
T Consensus       373 ----------------g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~  403 (408)
T PRK04612        373 ----------------GPDVLRFVPALNLTDAELADGLARLRLALAD  403 (408)
T ss_pred             ----------------CCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence                            1244888764    48888888888888865

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.71  E-value=4.8e-15  Score=131.32  Aligned_cols=206  Identities=24%  Similarity=0.209  Sum_probs=145.5

Q ss_pred             HHHHHHhhcCCC-ceEEeCcHHHHH-HHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc--EEEEeCCC------CH
Q 016612           60 LESLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNTC------DL  129 (386)
Q Consensus        60 l~~~l~~~~g~~-~~i~~~~gt~al-~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~------d~  129 (386)
                      ..++.+++||.+ ..+-..||+.|. .+.+++++|||+|+-.+..++++..+- .-....|.  +.+.++.+      |.
T Consensus        77 aierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg-~~v~~sG~~~~~v~Y~vd~et~~IDy  155 (413)
T COG0112          77 AIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHG-SPVNFSGKLFNVVSYGVDPETGLIDY  155 (413)
T ss_pred             HHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCC-CCCCccceeEEeEecccccccCccCH
Confidence            346677889999 466678899775 577889999999998887776664331 11222333  33333332      88


Q ss_pred             HHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC-----CCCccCCCCCCccEEEeccccccc
Q 016612          130 DEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIA  203 (386)
Q Consensus       130 ~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-----~~~~~~~~~~~~di~~~S~sK~~~  203 (386)
                      |++++... .++++|+.-....+  ...|++++.++|++.|.++++|.+|-     .|.+++|... +|+++.|.||+|-
T Consensus       156 D~~~k~a~e~kPK~ii~G~SaY~--r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTTHKTlr  232 (413)
T COG0112         156 DEVEKLAKEVKPKLIIAGGSAYS--RPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTTHKTLR  232 (413)
T ss_pred             HHHHHHHHHhCCCEEEECccccc--cccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cceEeCCcccCCC
Confidence            99998876 68999986544432  56799999999999999999999984     4667788875 9999999999998


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChh-----hHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHhhCC
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF-----DCWICLRGVK-TMALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      ||   |+|+|.++++++.+++.........+....     .+.++..+++ .+..+..+..+|++.|.+.|.++.
T Consensus       233 GP---rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G  304 (413)
T COG0112         233 GP---RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERG  304 (413)
T ss_pred             CC---CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcC
Confidence            87   479999998778777765433221111111     1112222333 346777888999999999998854

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.71  E-value=4.8e-16  Score=147.00  Aligned_cols=318  Identities=13%  Similarity=0.107  Sum_probs=180.0

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-C--CceEEeCcHHHHHHHHHHh---cCCC
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-A--DRALCFTSGMAALAAVTHL---LGTG   93 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~--~~~i~~~~gt~al~~~~~~---~~~g   93 (386)
                      ...+|..+|.+.++.....   .......+....++...++.+.+.++.. .  +..++++||++|+.+.+.+   ....
T Consensus        51 ~~~lGh~~p~v~~ai~~ql---~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr  127 (421)
T PRK09792         51 VLNTGHRHPDLVAAVEQQL---QQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGR  127 (421)
T ss_pred             hhcCCCCCHHHHHHHHHHH---HhccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCC
Confidence            3446777777665422221   1111111222234556677777777763 2  4678889999998643332   3334


Q ss_pred             CEEEecCCCCCcHHHHHhhhcc-----cCC-----cEEEEeCCC----------CHHHHHhhhC-----CCceEEEEeCC
Q 016612           94 EEIVAGDDLYGGTDRLLSRVTP-----KTG-----VVVKRVNTC----------DLDEVASAIG-----PWTKLVWVESP  148 (386)
Q Consensus        94 ~~Vlv~~~~~~~~~~~~~~~~~-----~~g-----~~~~~v~~~----------d~~~l~~~~~-----~~~~~v~~~~~  148 (386)
                      .+|+.-...|++..........     ..+     ..+..++..          +++.+++.+.     +++++|+++..
T Consensus       128 ~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv  207 (421)
T PRK09792        128 PGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPV  207 (421)
T ss_pred             CeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccc
Confidence            5788777777665322111110     111     012223321          3467777664     46889999999


Q ss_pred             CCCCcccc-c---HHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcCh
Q 016612          149 TNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       149 ~nptG~~~-~---l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      ++++|... |   +++|.++|++||+++|+||++.. +....     ......|+  .+++|.+++  |+++|+++++ +
T Consensus       208 q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~~--G~pigav~~~-~  282 (421)
T PRK09792        208 QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL--MTMAKSLAG--GMPLSGVVGN-A  282 (421)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE--EEeehhhcC--CCceEEEEEc-H
Confidence            99999875 5   89999999999999999999763 22111     11234675  467999963  6889999986 4


Q ss_pred             hHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC
Q 016612          219 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  298 (386)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~  298 (386)
                      ++.+.+...........++..+.+....++.+..  +.+.++.+.+.+.+.+.-.  . +.   ..++.    ....++.
T Consensus       283 ~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~l~--~-l~---~~~p~----v~~vrG~  350 (421)
T PRK09792        283 NIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK--ESLCERANQLGQRLKNTLI--D-AK---ESVPA----IAAVRGL  350 (421)
T ss_pred             HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHH--H-HH---HhCCC----cceeccc
Confidence            5655443222223334555566544444433321  1233333344443332110  0 00   01111    1234677


Q ss_pred             CceEEEEeCCH-------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----
Q 016612          299 GSVLSFLTGSL-------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----  367 (386)
Q Consensus       299 ~~~~~~~~~~~-------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----  367 (386)
                      |.++++.+.+.       .....+.+.+..+|+.+...+                         ...+.||+.++.    
T Consensus       351 Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g-------------------------~~~~~irl~P~l~i~~  405 (421)
T PRK09792        351 GSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCG-------------------------AYGNVIRFLYPLTIPD  405 (421)
T ss_pred             ceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecC-------------------------CCCCEEEEeCCCcCCH
Confidence            89999998533       346678888888888653211                         114569999754    


Q ss_pred             CChHHHHHHHHHHHh
Q 016612          368 EDVNDLISDLDKALR  382 (386)
Q Consensus       368 ~~~~~~i~~l~~~l~  382 (386)
                      +++++.++.+.++|+
T Consensus       406 ~ei~~~~~~l~~~l~  420 (421)
T PRK09792        406 AQFDAAMKILQDALS  420 (421)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            777777777777764

>PLN02880 tyrosine decarboxylase

Probab=99.71  E-value=2.1e-15  Score=144.48  Aligned_cols=159  Identities=16%  Similarity=0.150  Sum_probs=116.9

Q ss_pred             chHHHHHHHHHhhcCCCc---------eEEeCcHHHHH-HHHHHh----cC-------CCCEEEecCCCCCcHHHHHhhh
Q 016612           55 PTRDALESLLAKLDKADR---------ALCFTSGMAAL-AAVTHL----LG-------TGEEIVAGDDLYGGTDRLLSRV  113 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~---------~i~~~~gt~al-~~~~~~----~~-------~g~~Vlv~~~~~~~~~~~~~~~  113 (386)
                      .+-.++.+++++++|.++         .+++++||++. .++...    ++       +.-.|++++..|.+..    ++
T Consensus       122 ~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~----Ka  197 (490)
T PLN02880        122 ELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQ----KA  197 (490)
T ss_pred             HHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHH----HH
Confidence            456778889999998763         57788888774 444332    21       1224667888888885    55


Q ss_pred             cccCCcE---EEEeCC-------CCHHHHHhhhCC------CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCC
Q 016612          114 TPKTGVV---VKRVNT-------CDLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS  177 (386)
Q Consensus       114 ~~~~g~~---~~~v~~-------~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a  177 (386)
                      +...|+.   ++.|+.       .|+++|++.+.+      .+-+|+.+..+..+|.+.|+++|.++|+++|+++++|++
T Consensus       198 a~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA  277 (490)
T PLN02880        198 CQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAA  277 (490)
T ss_pred             HHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehh
Confidence            5566652   344443       288999988852      255777788889999999999999999999999999999


Q ss_pred             CCCCCccCC------CC-CCccEEEeccccccccCCCceEEEEEEcChh
Q 016612          178 IMSPVLSRP------LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       178 ~~~~~~~~~------~~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      |+.+....+      .. .++|.++.++|||+..|.+  +|++++++..
T Consensus       278 ~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~--~g~llvr~~~  324 (490)
T PLN02880        278 YAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD--CSLLWVKDRN  324 (490)
T ss_pred             hHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCcc--EEEEEEeCHH
Confidence            987654321      12 3689999999999998887  8999988643

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.70  E-value=1.9e-15  Score=129.09  Aligned_cols=161  Identities=20%  Similarity=0.242  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      +.+++.+-+...|...   ..++.++|+.++. ++..++.|||.|++-..+-.+..  +..+++++|+++..++.+    
T Consensus        51 Im~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~r--a~D~~~r~ga~V~~v~~~~G~~  128 (385)
T KOG2862|consen   51 IMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQR--AADCARRYGAEVDVVEADIGQA  128 (385)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHH--HHHHHHhhCceeeEEecCcccC
Confidence            5677777777777654   4677788899997 45568999999997655433332  347889999999999765    


Q ss_pred             -CHHHHHhhhC-CCceEEEEeCCCCCCccccc-HHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 -DLDEVASAIG-PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 -d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~-l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                       .++++++++. .+++++++++....||...| ++.+.++||+|+.++++|.+.+.|..+ ...+++.|+......|.++
T Consensus       129 ~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~  208 (385)
T KOG2862|consen  129 VPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALG  208 (385)
T ss_pred             ccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcC
Confidence             7889998886 68899999999999999999 788899999999999999998876643 4667899999999999999


Q ss_pred             cCCCceEEEEEEcChhH
Q 016612          204 GHSDVMAGVLAVKGERL  220 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~  220 (386)
                      +|+|+  +.+..+++.+
T Consensus       209 aP~GL--siisfS~ka~  223 (385)
T KOG2862|consen  209 APAGL--SIISFSDKAL  223 (385)
T ss_pred             CCCCc--ceeecCHHHH
Confidence            99995  6676665433

>PLN02590 probable tyrosine decarboxylase

Probab=99.70  E-value=1.5e-15  Score=145.54  Aligned_cols=284  Identities=15%  Similarity=0.161  Sum_probs=177.3

Q ss_pred             chHHHHHHHHHhhcCCCc---------eEEeCcHHHHH-HHHHHh----cC-------CCCEEEecCCCCCcHHHHHhhh
Q 016612           55 PTRDALESLLAKLDKADR---------ALCFTSGMAAL-AAVTHL----LG-------TGEEIVAGDDLYGGTDRLLSRV  113 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~---------~i~~~~gt~al-~~~~~~----~~-------~g~~Vlv~~~~~~~~~~~~~~~  113 (386)
                      .+-.++.+++++++|.++         .+++++||+|. .++.+.    ++       +.-.|++++..|.++.    +.
T Consensus       170 ~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~----KA  245 (539)
T PLN02590        170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFR----KA  245 (539)
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHH----HH
Confidence            356677889999988653         57788888774 444331    11       2225567888888875    55


Q ss_pred             cccCCc---EEEEeCCC-------CHHHHHhhhCC------CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCC
Q 016612          114 TPKTGV---VVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS  177 (386)
Q Consensus       114 ~~~~g~---~~~~v~~~-------d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a  177 (386)
                      +...|+   .++.++.+       |+++|++++.+      .+-+|+.+..+..+|.+.|+++|.++|++||++++||++
T Consensus       246 a~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA  325 (539)
T PLN02590        246 CLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAA  325 (539)
T ss_pred             HHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecc
Confidence            555555   34444432       89999988853      355777788888999999999999999999999999999


Q ss_pred             CCCCCccCCC----C---CCccEEEeccccccccCCCceEEEEEEcChhH-HHHH----HHhhh----------------
Q 016612          178 IMSPVLSRPL----E---LGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKEL----YFLQN----------------  229 (386)
Q Consensus       178 ~~~~~~~~~~----~---~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~-~~~~----~~~~~----------------  229 (386)
                      |+......+.    .   ..+|-++.++|||+..|.+  +|+++++++.. .+.+    ..+..                
T Consensus       326 ~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~--cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i  403 (539)
T PLN02590        326 YAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQT--CSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQI  403 (539)
T ss_pred             hhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC--EEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCC
Confidence            9866543221    1   2479999999999988776  89988887532 2211    11110                


Q ss_pred             hcCCCCChhhHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC
Q 016612          230 AEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  307 (386)
Q Consensus       230 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~  307 (386)
                      ..+........|+.++  +.+.+..++++..+.++.+.+.+++.+.++-+.                 +..-++++|...
T Consensus       404 ~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~-----------------~~~l~iVcFr~~  466 (539)
T PLN02590        404 SLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVT-----------------TRYFSLVCFRLA  466 (539)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-----------------CCceEEEEEEec
Confidence            0111223344455444  344567777777788888888887765431111                 112367788763


Q ss_pred             C--------HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-----cCChHHHH
Q 016612          308 S--------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLI  374 (386)
Q Consensus       308 ~--------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i  374 (386)
                      .        .....++.+++...|...-.         +...              -+.-++|++++     .++++.++
T Consensus       467 ~~~~~~~~~~~ln~~l~~~l~~~G~~~vs---------~t~~--------------~g~~~lR~~i~n~~T~~~dv~~~~  523 (539)
T PLN02590        467 PVDGDEDQCNERNRELLAAVNSTGKIFIS---------HTAL--------------SGKFVLRFAVGAPLTEEKHVTEAW  523 (539)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCEEEE---------eeEE--------------CCEEEEEEEecCCCCCHHHHHHHH
Confidence            2        12234555555444432110         0000              02345999984     37777777


Q ss_pred             HHHHHHHhcC
Q 016612          375 SDLDKALRTG  384 (386)
Q Consensus       375 ~~l~~~l~~~  384 (386)
                      +.|.+..+++
T Consensus       524 ~~i~~~a~~~  533 (539)
T PLN02590        524 QIIQKHASKF  533 (539)
T ss_pred             HHHHHHHHHh
Confidence            7777765543

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.70  E-value=7.2e-16  Score=146.08  Aligned_cols=318  Identities=13%  Similarity=0.125  Sum_probs=178.8

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC-C--CceEEeCcHHHHHHHHHH---hcCCC
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-A--DRALCFTSGMAALAAVTH---LLGTG   93 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~--~~~i~~~~gt~al~~~~~---~~~~g   93 (386)
                      ...+|..+|.+.++.....   .......+....++...++.+.|.++.. .  +...+++||++|+.+.+.   .....
T Consensus        44 ~~~lGh~~p~v~~a~~~ql---~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr  120 (420)
T TIGR00700        44 VLNIGHSHPRVVDAVRTQV---AEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGR  120 (420)
T ss_pred             hccCCCCCHHHHHHHHHHH---HhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCC
Confidence            3446777777665422211   1111111222234556677777777763 2  467888999999864333   23344


Q ss_pred             CEEEecCCCCCcHHHHHhhhcc-----cCC-----cEEEEeCCC----------------CHHHHHhhh-----CCCceE
Q 016612           94 EEIVAGDDLYGGTDRLLSRVTP-----KTG-----VVVKRVNTC----------------DLDEVASAI-----GPWTKL  142 (386)
Q Consensus        94 ~~Vlv~~~~~~~~~~~~~~~~~-----~~g-----~~~~~v~~~----------------d~~~l~~~~-----~~~~~~  142 (386)
                      .+|+.-..+|++.......+..     ..+     -.+..++..                +++.+++.+     .+++.+
T Consensus       121 ~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAa  200 (420)
T TIGR00700       121 PGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAA  200 (420)
T ss_pred             CcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEE
Confidence            5677667777665322112111     111     112222221                144566554     257899


Q ss_pred             EEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCC-Ccc-----CCCCCCccEEEeccccccccCCCceEEE
Q 016612          143 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS-----RPLELGADIVMHSATKFIAGHSDVMAGV  212 (386)
Q Consensus       143 v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~-~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~  212 (386)
                      |+++.....+|.+.+    +++|.++|++||+++|+||++... ...     .......|++  +++|.++  +|+++|+
T Consensus       201 vi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~--~lsK~l~--~G~pig~  276 (420)
T TIGR00700       201 LVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLI--TTAKSLA--DGLPLSG  276 (420)
T ss_pred             EEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEE--Eeecccc--CCcceEE
Confidence            999998888888775    899999999999999999998632 111     1122346765  4899995  4689999


Q ss_pred             EEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhh
Q 016612          213 LAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  292 (386)
Q Consensus       213 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~  292 (386)
                      ++++ +++.+.+.........+.++..++++...++.+.  .+...++.+.+.+.+.+.-.  . +   ...++..    
T Consensus       277 v~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~--~~~~~~~~~~~g~~l~~~L~--~-l---~~~~~~~----  343 (420)
T TIGR00700       277 VTGR-AEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIE--SEGLIERARQIGRLVTDRLT--T-L---KAVDPRI----  343 (420)
T ss_pred             EEec-HHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHH--H-H---HhhCCCE----
Confidence            9987 4565544322233333555666666544443221  12233333333333322110  0 0   0001110    


Q ss_pred             hccCCCCceEEEEeC-------CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 016612          293 SQAKGAGSVLSFLTG-------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  365 (386)
Q Consensus       293 ~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  365 (386)
                      ...++.|.++++.+.       +.....++.+.+...|+.+.++..+                         .+++|+++
T Consensus       344 ~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f-------------------------~~~lRl~p  398 (420)
T TIGR00700       344 GDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF-------------------------GNIIRFLP  398 (420)
T ss_pred             EEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC-------------------------CCEEEEEC
Confidence            112456888888762       2345677887777888876654321                         24599997


Q ss_pred             c----cCChHHHHHHHHHHHh
Q 016612          366 G----IEDVNDLISDLDKALR  382 (386)
Q Consensus       366 ~----~~~~~~~i~~l~~~l~  382 (386)
                      +    .+++++.++.+.++|+
T Consensus       399 ~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       399 PLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             CCCcCHHHHHHHHHHHHHHhh
Confidence            5    3677777777777764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.70  E-value=3.4e-15  Score=139.84  Aligned_cols=233  Identities=18%  Similarity=0.183  Sum_probs=137.8

Q ss_pred             eEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcH-HHHHhhhc------ccCCc---EEEEeCCCCHHHHHhhhCCC
Q 016612           73 ALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGT-DRLLSRVT------PKTGV---VVKRVNTCDLDEVASAIGPW  139 (386)
Q Consensus        73 ~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~-~~~~~~~~------~~~g~---~~~~v~~~d~~~l~~~~~~~  139 (386)
                      .++++||+++..+.+.+   ..++++|++.+..|++. ...+ ...      +.++.   .+...+..|++++++.++++
T Consensus        87 ~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~  165 (375)
T PRK04260         87 AFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSM-SATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKN  165 (375)
T ss_pred             EEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHH-hccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCC
Confidence            46778899887643332   34567888887777653 2221 111      11111   12223345899999988888


Q ss_pred             ceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCccCC-----CCCCccEEEeccccccccCCCce
Q 016612          140 TKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVM  209 (386)
Q Consensus       140 ~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~~~-----~~~~~di~~~S~sK~~~g~~g~~  209 (386)
                      +.+|++++++|++|.+.+    +++|.++|+++|+++|+||++.. +.....     .....|++  |+||.++ + |++
T Consensus       166 ~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~-~-G~~  241 (375)
T PRK04260        166 TAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLA-N-GVP  241 (375)
T ss_pred             eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--Eeccccc-C-Ccc
Confidence            899999999999998865    89999999999999999999852 111111     12345654  7899985 3 578


Q ss_pred             EEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCc
Q 016612          210 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  287 (386)
Q Consensus       210 ~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  287 (386)
                      +|++++++ ++.+.+.........+.++..+.++...++.+.  ...++..+..+.+.+.+.+..          ...+.
T Consensus       242 ig~~~~~~-~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~  310 (375)
T PRK04260        242 VGAMLAKS-SLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKAL----------QDKET  310 (375)
T ss_pred             eEEEEEcH-HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------hhCCC
Confidence            99999974 454444322222223445666655555543322  222333334444444443321          11110


Q ss_pred             hhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccC
Q 016612          288 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  327 (386)
Q Consensus       288 ~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~  327 (386)
                      .    ...++.|.++++.+..  ...++.+.+...|+.+.
T Consensus       311 ~----~~~~~~g~~~~~~~~~--~~~~~~~~l~~~Gi~v~  344 (375)
T PRK04260        311 V----TTVRGLGYMIGIETTA--DLSQLVEAARDKGLIVL  344 (375)
T ss_pred             e----eEEeccceEEEEEecC--cHHHHHHHHHhCCCEEe
Confidence            0    0113457888888732  24567777777787653

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.69  E-value=2.5e-15  Score=152.65  Aligned_cols=158  Identities=23%  Similarity=0.253  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH-HHH-HHHHHh----cCCCC----EEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHL----LGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt-~al-~~~~~~----~~~g~----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      ...++++++++++|.++.-+..+|+ +|. ..+++.    .++|+    +|++++..|++..    ..+...|++++.++
T Consensus       543 ~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp----~sa~~~G~~vv~v~  618 (954)
T PRK05367        543 LIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNP----ASAVMAGMKVVVVA  618 (954)
T ss_pred             HHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhH----HHHHHCCCEEEEEC
Confidence            5778899999999999766666554 554 333232    35565    5999999998886    34567799999988


Q ss_pred             CC-----CHHHHHhhhCC---CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC--ccCCCCCCccEEE
Q 016612          126 TC-----DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVM  195 (386)
Q Consensus       126 ~~-----d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~~di~~  195 (386)
                      .+     |+++|++++++   ++.+|++++|++..+...|+++|+++||++|+++++|.++..+.  +..+...|+|+++
T Consensus       619 ~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~  698 (954)
T PRK05367        619 CDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSH  698 (954)
T ss_pred             CCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEE
Confidence            64     88999998864   57788889998863334789999999999999999999997543  3356678999999


Q ss_pred             eccccccccCCCc---eEEEEEEcC
Q 016612          196 HSATKFIAGHSDV---MAGVLAVKG  217 (386)
Q Consensus       196 ~S~sK~~~g~~g~---~~G~i~~~~  217 (386)
                      +|+||||+.|.|.   -.|++++++
T Consensus       699 ~s~HK~f~~P~G~GGPg~G~l~vr~  723 (954)
T PRK05367        699 LNLHKTFCIPHGGGGPGVGPIGVKA  723 (954)
T ss_pred             ecCcccCCCCcCCCCCceEEEeecc
Confidence            9999998543321   157888863

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.69  E-value=1.3e-15  Score=140.46  Aligned_cols=302  Identities=14%  Similarity=0.116  Sum_probs=191.4

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh---cCCCCEE
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL---LGTGEEI   96 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~---~~~g~~V   96 (386)
                      ...+|..+|++.++......+.    .+......++...++++.++++.+.+..++++||++|+.+.+.+   ....++|
T Consensus        35 ~~~lGh~~p~v~~ai~~ql~~~----~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~I  110 (364)
T PRK04013         35 VNVLGHNHPEWVEEMSEQLEKL----VVAGPMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEI  110 (364)
T ss_pred             hccCCCCCHHHHHHHHHHHHhc----CCccCCcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEE
Confidence            4568888888876532221111    11111124567888999999998878889999999998744332   2333789


Q ss_pred             EecCCCCCcHHHHHhhh---------cccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccc-c---HHHHHH
Q 016612           97 VAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC-D---IRKIAE  163 (386)
Q Consensus        97 lv~~~~~~~~~~~~~~~---------~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~-~---l~~i~~  163 (386)
                      ++.+.+|++........         ....-..+..++..|.+++++.+++++++|++++.....|... |   +++|.+
T Consensus       111 i~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~  190 (364)
T PRK04013        111 IAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRD  190 (364)
T ss_pred             EEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHH
Confidence            98888787753221111         0111123455666789999999988999999999888777665 4   999999


Q ss_pred             HHHHcCCEEEEeCCCCC---CCcc--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChh
Q 016612          164 MAHAHGALLLVDNSIMS---PVLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (386)
Q Consensus       164 la~~~~~~li~D~a~~~---~~~~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~  238 (386)
                      +|++||+++|+||+++.   |.+.  ......+|+++.  +|.+++  |+.++.++.+.+ +.    ........+.++.
T Consensus       191 lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~--gK~lgg--G~P~~a~~~~~~-~~----~~~~~~T~~gnp~  261 (364)
T PRK04013        191 LTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTM--GKGIGN--GVPVSLTLTNFD-VE----RGKHGSTFGGNPL  261 (364)
T ss_pred             HHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEe--cccccC--CceeEEEEeccc-cc----CCCcCCCCCcCHH
Confidence            99999999999999762   2221  122346788864  999975  466777777643 31    1122233456666


Q ss_pred             hHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhh
Q 016612          239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET  318 (386)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  318 (386)
                      ..++....++.+..  +.+.++++..   +.+..      .+.+          .+.++.|.++.+++..+  ...+.+.
T Consensus       262 ~~aaa~a~l~~i~~--~~l~~~~~~~---l~~l~------~~~v----------~~vRG~Gl~~gve~~~~--~~~i~~~  318 (364)
T PRK04013        262 ACKAVAVTLRILRR--ERLVEKAGEK---FIEIK------GERV----------VTTRGRGLMIGIVLKKP--VGKYVEE  318 (364)
T ss_pred             HHHHHHHHHHHHHh--ccHHHHHHHH---HHHhc------cCcc----------eeeeeCcEEEEEEeCCc--HHHHHHH
Confidence            67666665554432  2344444433   22211      0111          12377899999998543  4567777


Q ss_pred             cCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhcC
Q 016612          319 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       319 l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~~  384 (386)
                      +..+|+.+...+                           .+.+|+.+    +.++++++++.|.+++++.
T Consensus       319 ~~~~Gll~~~~g---------------------------~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~  361 (364)
T PRK04013        319 LQNRGYLVHTAG---------------------------QRVIRLLPPLIISKDTMEEAKSAIEGVINDI  361 (364)
T ss_pred             HHhCCcEEeeCC---------------------------CCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence            777777653211                           23477776    4588999999999988764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.69  E-value=8.6e-15  Score=140.52  Aligned_cols=214  Identities=18%  Similarity=0.183  Sum_probs=138.7

Q ss_pred             CchHHHHHHHHHhhcCC-------------C--ceEEeCcHHHH-HHHHHH----hcC----------------------
Q 016612           54 NPTRDALESLLAKLDKA-------------D--RALCFTSGMAA-LAAVTH----LLG----------------------   91 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~-------------~--~~i~~~~gt~a-l~~~~~----~~~----------------------   91 (386)
                      ..+-.++.++++++++.             +  ..+++++||+| +.++..    .+.                      
T Consensus       128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~  207 (522)
T TIGR03799       128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY  207 (522)
T ss_pred             HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence            34566677788777641             1  25778888966 444433    121                      


Q ss_pred             CCCEEEecCCCCCcHHHHHhhhcccCCc---EEEEeCCC-----CHHHHHhhhC----CCceEEEEe--CCCCCCccccc
Q 016612           92 TGEEIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----PWTKLVWVE--SPTNPRQQICD  157 (386)
Q Consensus        92 ~g~~Vlv~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~~~----~~~~~v~~~--~~~nptG~~~~  157 (386)
                      ++..|++++..|.+..    +.++..|+   .++.++.+     |+++|++.++    ++++.+.+.  ..++.+|.+.|
T Consensus       208 ~~~~v~~S~~~H~S~~----kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp  283 (522)
T TIGR03799       208 DGLAILVSERGHYSLG----KAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP  283 (522)
T ss_pred             CceEEEECCCchHHHH----HHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC
Confidence            2357889999998886    44444555   56666653     8999998875    455555554  56778999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCCCCCCccCC------CC-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh---
Q 016612          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRP------LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---  227 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~~~~~~~~~------~~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~---  227 (386)
                      +++|+++|+++|+++++|.+|+.+....+      .. .++|.++.|.|||+.+|.|  +|+++.+++.+.+.+...   
T Consensus       284 l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g--~G~llvr~~~~~~~~~~~~~Y  361 (522)
T TIGR03799       284 LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMG--AGMVLFKDPALMSAIEHHAEY  361 (522)
T ss_pred             HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcc--cEEEEEeCHHHHHHhccCcch
Confidence            99999999999999999999987654322      22 2689999999999989988  799988876554433221   


Q ss_pred             -hhh-----------cCCCCChhhHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHhhCCC
Q 016612          228 -QNA-----------EGSGLAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       228 -~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                       ...           .+........|+.++.+  ..+....++..+.++.+.+.+++.+.
T Consensus       362 l~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~  421 (522)
T TIGR03799       362 ILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPD  421 (522)
T ss_pred             hcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence             000           00111112233333322  33455555566666777777766653

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.69  E-value=1.1e-15  Score=144.48  Aligned_cols=315  Identities=11%  Similarity=0.092  Sum_probs=179.0

Q ss_pred             CCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEeCcHHHHHHHHHH---hcCCCC
Q 016612           21 DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTH---LLGTGE   94 (386)
Q Consensus        21 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~gt~al~~~~~---~~~~g~   94 (386)
                      ..+|.-+|.+.++.....   .+.....+....++...++.+.+.++..   .+...+++||++|+.+.+.   ......
T Consensus        52 ~~lGh~~p~v~~ai~~ql---~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~  128 (421)
T PRK06777         52 LNTGHRHPKVVAAVRQQL---DQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRP  128 (421)
T ss_pred             hccCCCCHHHHHHHHHHH---hhcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCC
Confidence            446777777665422211   1111111222234556677777777764   2468888999999864333   233345


Q ss_pred             EEEecCCCCCcHHHHHhhhccc-------CC---cEEEEeCCC----------CHHHHHhhhC-----CCceEEEEeCCC
Q 016612           95 EIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTC----------DLDEVASAIG-----PWTKLVWVESPT  149 (386)
Q Consensus        95 ~Vlv~~~~~~~~~~~~~~~~~~-------~g---~~~~~v~~~----------d~~~l~~~~~-----~~~~~v~~~~~~  149 (386)
                      +|+.-+..|++.......+...       ++   ..+..++..          +++.+++.+.     +++.+|+++...
T Consensus       129 ~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~  208 (421)
T PRK06777        129 GVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQ  208 (421)
T ss_pred             eEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCcc
Confidence            6777777776653221111110       00   011222211          2556776653     468899999998


Q ss_pred             CCCccc-cc---HHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChh
Q 016612          150 NPRQQI-CD---IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       150 nptG~~-~~---l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      +..|.. .|   +++|.++|++||+++|+||++.. +....     ......|++  +++|.++  +|+++|+++++ ++
T Consensus       209 ~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~--~G~pigav~~~-~~  283 (421)
T PRK06777        209 GEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLG--GGMPISAVVGR-AE  283 (421)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEE--eeehhhc--CCCceEEEEEc-HH
Confidence            888865 34   89999999999999999999862 11111     112246766  5899995  46899999987 55


Q ss_pred             HHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCC
Q 016612          220 LAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  297 (386)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~  297 (386)
                      +.+.+.........+.++..+.++...++.+..  ..++..+..+.+.+.|++...    ..+.+          ...++
T Consensus       284 i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~i----------~~vrg  349 (421)
T PRK06777        284 VMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKA----SCPAI----------VDIRA  349 (421)
T ss_pred             HHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH----hCCCe----------EEecC
Confidence            655443332323334566666666666543322  122222333333333332210    00111          12256


Q ss_pred             CCceEEEEeCC-------HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----
Q 016612          298 AGSVLSFLTGS-------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----  366 (386)
Q Consensus       298 ~~~~~~~~~~~-------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----  366 (386)
                      .|.++.+.+..       ......+.+++...|+.+.++..                         ..+++|+++.    
T Consensus       350 ~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~-------------------------~g~~lr~~ppl~i~  404 (421)
T PRK06777        350 RGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGV-------------------------HGNVIRFLYPLTIP  404 (421)
T ss_pred             ceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCC-------------------------CCCEEEEeCCCCCC
Confidence            78888876632       23466677777777887665432                         1245999885    


Q ss_pred             cCChHHHHHHHHHHHh
Q 016612          367 IEDVNDLISDLDKALR  382 (386)
Q Consensus       367 ~~~~~~~i~~l~~~l~  382 (386)
                      .+++++.++.|.++|.
T Consensus       405 ~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        405 DAQFSKALNILTRLLA  420 (421)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4788888888887764

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.69  E-value=4.3e-15  Score=140.27  Aligned_cols=287  Identities=16%  Similarity=0.178  Sum_probs=168.6

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---c---
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---L---   90 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~---   90 (386)
                      ...+|..+|.+.++........    .+ .+.. .++...++.+.|.+.+..  +...+++||++|+.+.+.+   .   
T Consensus        86 ~~~lGh~hp~v~~Av~~ql~~l----~~-~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~  160 (442)
T TIGR03372        86 IFNVGHRNPNVIAAVENQLAKQ----PL-HSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP  160 (442)
T ss_pred             hhhcCCCCHHHHHHHHHHHHhC----CC-cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhh
Confidence            4457888888776433221111    11 1222 356677788888887654  3567789999998643332   2   


Q ss_pred             CCCCEEEecCCCCCcHHHHHhhhc------cc---CCcEEEEeCCCCHHHHHhhhC------CCceEEEEeCCCCCCccc
Q 016612           91 GTGEEIVAGDDLYGGTDRLLSRVT------PK---TGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQI  155 (386)
Q Consensus        91 ~~g~~Vlv~~~~~~~~~~~~~~~~------~~---~g~~~~~v~~~d~~~l~~~~~------~~~~~v~~~~~~nptG~~  155 (386)
                      +.+..|++.+..|++.......+.      +.   ....+..++..|.+++++.+.      +++.+|+++......|.+
T Consensus       161 ~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~  240 (442)
T TIGR03372       161 RGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVI  240 (442)
T ss_pred             cCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcc
Confidence            123568877777766532211111      01   112345667778887776663      468899999998888888


Q ss_pred             cc----HHHHHHHHHHcCCEEEEeCCCC-CCCccC-----CCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHH
Q 016612          156 CD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKEL  224 (386)
Q Consensus       156 ~~----l~~i~~la~~~~~~li~D~a~~-~~~~~~-----~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~  224 (386)
                      .|    ++++.++|++||+++|+||++. .|-...     .....+|+++  ++|.+++  | +.+|.++++ +++.+.+
T Consensus       241 ~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~--G~~Pigavv~~-~~i~~~~  315 (442)
T TIGR03372       241 LPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC--LAKALGG--GVMPIGATIAT-EAVFSVL  315 (442)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee--ehhhhcC--CcccceEEEec-HHHHHhh
Confidence            87    9999999999999999999984 222211     1233578876  7999964  3 236777766 5565544


Q ss_pred             HH--hhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceE
Q 016612          225 YF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  302 (386)
Q Consensus       225 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  302 (386)
                      ..  .......+.++...++.+..++.+..  +.+.++++.+.+++.+.-.  .+    ...++.   ...+.++.|.++
T Consensus       316 ~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~--~l----~~~~~~---~i~~vRG~Gl~~  384 (442)
T TIGR03372       316 FDNPFLHTTTFGGNPLACAAALATINELLE--KNLPAQAAIKGDFLLDGFQ--QL----AAEYPD---LIIEARGKGLLM  384 (442)
T ss_pred             hccCccccCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH--HH----HHhCCC---ceEEEecceEEE
Confidence            21  11122223466666666666654422  2344455554444433110  00    001110   001225788999


Q ss_pred             EEEeCCHHhHHHHHhhcCcceeccC
Q 016612          303 SFLTGSLALSKHVVETTKYFSITVS  327 (386)
Q Consensus       303 ~~~~~~~~~~~~l~~~l~~~gi~~~  327 (386)
                      .+.+.+......+.+.+..+|+.+.
T Consensus       385 giel~~~~~~~~i~~~l~~~Gvl~~  409 (442)
T TIGR03372       385 AIEFRDNEIGYAFAKELFQQNILVA  409 (442)
T ss_pred             EEEeCChHHHHHHHHHHHHCCcEEe
Confidence            9999665566778888888888654

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.68  E-value=2.3e-15  Score=142.93  Aligned_cols=283  Identities=12%  Similarity=0.114  Sum_probs=166.0

Q ss_pred             CchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHHh---c------CCCCEEEecCCCCCcHHHHHhhhccc------
Q 016612           54 NPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHL---L------GTGEEIVAGDDLYGGTDRLLSRVTPK------  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~~---~------~~g~~Vlv~~~~~~~~~~~~~~~~~~------  116 (386)
                      ++...++.+.+.+.+.  .+...+++||++|+.+.+.+   .      ....+|+.-+..|++.......+...      
T Consensus        84 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~  163 (423)
T PRK05964         84 HEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHAL  163 (423)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccccc
Confidence            3456677777777764  35788889999998643332   1      12357887777777653222222111      


Q ss_pred             -----CCcEEEEeCCCC-----HHHHHhhhC---CCceEEEEeC-CCCCCccccc----HHHHHHHHHHcCCEEEEeCCC
Q 016612          117 -----TGVVVKRVNTCD-----LDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       117 -----~g~~~~~v~~~d-----~~~l~~~~~---~~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~~~~li~D~a~  178 (386)
                           .+...+.++..|     ++++++.+.   +++.+|+++. .++..|...+    +++|.++|++||+++|+||++
T Consensus       164 ~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~  243 (423)
T PRK05964        164 YTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA  243 (423)
T ss_pred             ccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence                 122222333334     778887774   5678999987 5777787764    899999999999999999998


Q ss_pred             C-CCCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh------hhhcCCCCChhhHHHHHhc
Q 016612          179 M-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL------QNAEGSGLAPFDCWICLRG  246 (386)
Q Consensus       179 ~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  246 (386)
                      . .+...     .......|++  +++|+++| +.+.+|+++++ +++.+.+...      ......+.++....++...
T Consensus       244 tg~gr~G~~~a~~~~~v~pDi~--~~~K~l~g-G~~p~~av~~~-~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~  319 (423)
T PRK05964        244 TGFGRTGTLFACEQAGVSPDIM--CLSKGLTG-GYLPLAATLCT-AEIFEAFYSDDRAKAFMHSPSYTANPLACAAANAS  319 (423)
T ss_pred             hCCCcCcchhHHHhcCCCCCee--eeehhhhc-CcccceEEEEc-HHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHH
Confidence            5 22111     1122356776  56899965 23567888776 5566554321      1111123455555555555


Q ss_pred             CCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHH---hHHHHHhhcCc
Q 016612          247 VKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA---LSKHVVETTKY  321 (386)
Q Consensus       247 ~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~  321 (386)
                      ++.+..  ..++..+..+.+.+.+++..           ..+.+    .+.++.|.++.+.+.+..   ....+.+.+..
T Consensus       320 l~~l~~~~~~~~~~~~g~~l~~~l~~l~-----------~~~~i----~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~  384 (423)
T PRK05964        320 LDLFEDEPVLERVAALSAGLAEGLEPFR-----------DLPGV----ADVRVLGAIGAVELDRPVLERDGPALRAFALE  384 (423)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHhhc-----------cCCCe----EEeecccEEEEEEeccCcchhHHHHHHHHHHH
Confidence            443321  12333333444444444321           11111    112556788888885432   35677788877


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      +|+.+.+.                            .+.+|+++.    .++++++++.+++++++
T Consensus       385 ~Gv~v~~~----------------------------~~~lR~~p~l~~t~edId~~v~~l~~al~~  422 (423)
T PRK05964        385 RGVLLRPL----------------------------GNTIYLMPPYIITAEELDRITDAIVEVADE  422 (423)
T ss_pred             CCeEEEec----------------------------CCEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence            88765431                            123999875    37777777777777764

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.68  E-value=2e-15  Score=142.47  Aligned_cols=319  Identities=14%  Similarity=0.136  Sum_probs=178.6

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccC-CCCchHHHHHHHHHhhc--C--CC-ceEEe-CcHHHHHHHHHHh---
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLD--K--AD-RALCF-TSGMAALAAVTHL---   89 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~--g--~~-~~i~~-~~gt~al~~~~~~---   89 (386)
                      ...+|..+|.+.++.....   .. ..+.... ..++...++.+.+.+..  +  .. ...++ +||++|+.+.+.+   
T Consensus        46 ~~~lGh~~p~v~~ai~~ql---~~-~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~  121 (412)
T TIGR02407        46 ALNYGHNNPKLKQALIDYL---AD-DGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARK  121 (412)
T ss_pred             hccCCCCCHHHHHHHHHHH---hh-ccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhh
Confidence            4457888888776522211   11 1111111 13455667777777753  2  22 34444 7999998644332   


Q ss_pred             cCCCCEEEecCCCCCcHHHHHhhhc------ccCC---cEEEEeCCC--------CHHHHHhhhC------CCceEEEEe
Q 016612           90 LGTGEEIVAGDDLYGGTDRLLSRVT------PKTG---VVVKRVNTC--------DLDEVASAIG------PWTKLVWVE  146 (386)
Q Consensus        90 ~~~g~~Vlv~~~~~~~~~~~~~~~~------~~~g---~~~~~v~~~--------d~~~l~~~~~------~~~~~v~~~  146 (386)
                      ...+.+|+.-...|++.........      ..++   ..+..+|..        +++.+++.+.      +++.+|+++
T Consensus       122 ~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~E  201 (412)
T TIGR02407       122 VTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILE  201 (412)
T ss_pred             hcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEec
Confidence            3344678877777766532221211      1111   123444432        3666777775      357899999


Q ss_pred             CCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCC---c--cCCCCCCccEEEeccccccccCCCceEEEEEEc
Q 016612          147 SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPV---L--SRPLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (386)
Q Consensus       147 ~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~---~--~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~  216 (386)
                      ...++.|.+.+    +++|.++|++||+++|+||+++ .|-   .  .......+|+++  ++|+++ +.|+++|+++++
T Consensus       202 pi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg-~~G~pigav~~~  278 (412)
T TIGR02407       202 TVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSIS-GYGLPLALTLIK  278 (412)
T ss_pred             cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEE--echhcc-CCccceeEEEEc
Confidence            99998888653    8999999999999999999986 221   1  122344678775  689984 446889999997


Q ss_pred             ChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccC
Q 016612          217 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  296 (386)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~  296 (386)
                      ++ + ..+.........+.++....+....++.+ ...+...++.+.+.+++.+...   .+...++..    +  ...+
T Consensus       279 ~~-~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~-i~~~~l~~~~~~~g~~l~~~l~---~l~~~~~~~----~--~~vr  346 (412)
T TIGR02407       279 PE-L-DVWKPGEHNGTFRGNNLAFVTATAALEYY-WSDDAFEKAVQRKSEIIQERLD---RIVAEYPEL----I--KQVR  346 (412)
T ss_pred             hh-h-hccCCCccCCCCCccHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHH---HHHhhCCCc----e--Eeee
Confidence            54 3 32221112222233444443333333321 1112344444444444443210   000111110    0  1235


Q ss_pred             CCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHH
Q 016612          297 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVND  372 (386)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~  372 (386)
                      +.|.++++.+++......+.+.+..+|+.+.....                         ..+.||+++..    +++++
T Consensus       347 g~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~~-------------------------~~~~lr~~p~l~~t~~~i~~  401 (412)
T TIGR02407       347 GRGLMQGIECGDGDLAGKIAKAAFENGLIIETSGP-------------------------NDEVIKLLPPLTIDEETLQQ  401 (412)
T ss_pred             cceeEEEEEecChHHHHHHHHHHHHCCCEEeccCC-------------------------CCCEEEEECCCCCCHHHHHH
Confidence            67888999997766677888888888886543211                         23459998864    66777


Q ss_pred             HHHHHHHHHh
Q 016612          373 LISDLDKALR  382 (386)
Q Consensus       373 ~i~~l~~~l~  382 (386)
                      +++.+.++|+
T Consensus       402 ~~~~l~~~l~  411 (412)
T TIGR02407       402 GLDILEQAVE  411 (412)
T ss_pred             HHHHHHHHHh
Confidence            7777777664

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.68  E-value=1.9e-15  Score=139.63  Aligned_cols=318  Identities=15%  Similarity=0.144  Sum_probs=190.5

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEeCcHHHHHHHHHH---hcCCC
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAAVTH---LLGTG   93 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~~~~---~~~~g   93 (386)
                      ...+|..+|.+.++......   ......+...-.+...++.+.|.+....   +..++.+||++|+.+.+.   ....+
T Consensus        67 v~~~GH~hP~Vv~Av~~q~~---~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr  143 (447)
T COG0160          67 VLNLGHNHPRVVEAVKRQLA---KLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGR  143 (447)
T ss_pred             hhccCCCCHHHHHHHHHHHH---HhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCC
Confidence            34477778777765332211   1111111111114455666666666543   368888999999864333   33445


Q ss_pred             CEEEecCCCCCc-HHHHHhhh----cc-----cCCcEEEEeCCC-----------------CHHHHHhhhC------CCc
Q 016612           94 EEIVAGDDLYGG-TDRLLSRV----TP-----KTGVVVKRVNTC-----------------DLDEVASAIG------PWT  140 (386)
Q Consensus        94 ~~Vlv~~~~~~~-~~~~~~~~----~~-----~~g~~~~~v~~~-----------------d~~~l~~~~~------~~~  140 (386)
                      ..|+.-...|++ +...+.-.    ..     ...-.+..+|..                 ..+.++..+.      .++
T Consensus       144 ~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~v  223 (447)
T COG0160         144 PGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEV  223 (447)
T ss_pred             CcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCce
Confidence            667766666654 33322100    01     111124444432                 1233444332      468


Q ss_pred             eEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC----CCCccCCC--CCCccEEEeccccccccCCCceE
Q 016612          141 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPL--ELGADIVMHSATKFIAGHSDVMA  210 (386)
Q Consensus       141 ~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~----~~~~~~~~--~~~~di~~~S~sK~~~g~~g~~~  210 (386)
                      .+++++..+...|.+.+    ++++.++|++||+++|+||+|.    +|.+....  ...+|+++  ++|.+++  |+..
T Consensus       224 AaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~--G~Pl  299 (447)
T COG0160         224 AAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGG--GLPL  299 (447)
T ss_pred             eEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEE--ecccccC--CCce
Confidence            89999999998898875    8999999999999999999986    34433222  23579986  5999975  6778


Q ss_pred             EEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhh
Q 016612          211 GVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  290 (386)
Q Consensus       211 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i  290 (386)
                      |.++++ +++++ ...-......+-++..+++....++.+..  +.+.+++..+.+++.+.-.-.+-.++.+        
T Consensus       300 ~avv~r-~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~--e~L~~~a~~~G~~l~~~L~~l~~~~~~I--------  367 (447)
T COG0160         300 SAVVGR-AEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIEE--ENLLERAAELGEYLRDRLEELQEKHPLI--------  367 (447)
T ss_pred             eEEecc-HHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHhhcCce--------
Confidence            999887 55655 32322333345566666666555553332  3566666666666554311001111222        


Q ss_pred             hhhccCCCCceEEEEeC--------CHHhHHHHHhhcCcceecc-CCCCccccccccccccCCCCCHHHHHhcCCCCCeE
Q 016612          291 HYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITV-SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  361 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~~-~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  361 (386)
                        .+.+|.|.++.+++.        +.....++.+++..+|+.+ ..|.                          ..+.|
T Consensus       368 --gdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~--------------------------~~nvi  419 (447)
T COG0160         368 --GDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGP--------------------------HGNVL  419 (447)
T ss_pred             --ecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCC--------------------------CCcEE
Confidence              233778888988862        2467889999999999753 3332                          24558


Q ss_pred             EEEe----ccCChHHHHHHHHHHHhcC
Q 016612          362 RISV----GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       362 Ris~----~~~~~~~~i~~l~~~l~~~  384 (386)
                      ||.+    +.++.++.++.|.++|+++
T Consensus       420 Ri~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         420 RILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             EEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            8876    4589999999999998764

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.68  E-value=1.9e-15  Score=143.66  Aligned_cols=319  Identities=16%  Similarity=0.172  Sum_probs=186.4

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---cC--
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---LG--   91 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~~--   91 (386)
                      ...+|..+|.+.++........     ..++.. .++...++.+.|.+.+..  +...+++||++|+.+.+.+   ..  
T Consensus        93 ~~~lGH~~p~v~~Ai~~ql~~l-----~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~  167 (459)
T PRK11522         93 IFNVGHRNPVVVSAVQNQLAKQ-----PLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP  167 (459)
T ss_pred             hhhcCCCCHHHHHHHHHHHhhC-----cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhcc
Confidence            4557777877776433221111     111222 346677788888887643  3677888999998644332   22  


Q ss_pred             C-CCEEEecCCCCCcHHHHHhhhccc---------CCcEEEEeCCCCHHHHHhhhC------CCceEEEEeCCCCCCccc
Q 016612           92 T-GEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQI  155 (386)
Q Consensus        92 ~-g~~Vlv~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~d~~~l~~~~~------~~~~~v~~~~~~nptG~~  155 (386)
                      + ...|+.....|++...........         ....+..++..|.+++++.+.      +++.+|+++......|.+
T Consensus       168 ~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~  247 (459)
T PRK11522        168 RGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVI  247 (459)
T ss_pred             CCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCc
Confidence            2 246777777776653221111110         011234555668888887764      467899999998888888


Q ss_pred             cc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHH
Q 016612          156 CD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKEL  224 (386)
Q Consensus       156 ~~----l~~i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~  224 (386)
                      .|    ++++.++|++||+++|+||++. .|-..     ......+|++  +++|.+++  | +.+|.++++ +++.+.+
T Consensus       248 ~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDiv--t~gK~lgg--G~~Pigav~~~-~~i~~~~  322 (459)
T PRK11522        248 LPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDIL--CLAKALGG--GVMPIGATIAT-EEVFSVL  322 (459)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEE--EechhhhC--CCccceeEEEc-HHHHHHh
Confidence            76    9999999999999999999984 22111     1122357887  56999965  3 235666666 4455433


Q ss_pred             H--HhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceE
Q 016612          225 Y--FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  302 (386)
Q Consensus       225 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  302 (386)
                      .  ........+.++...++++..++.+..  +...++.+.+.+++.+.-.  . +..   .++.   ...+.++.|.++
T Consensus       323 ~~~~~~~~~T~~gnp~~~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~--~-l~~---~~~~---~i~~VrG~Gl~~  391 (459)
T PRK11522        323 FDNPFLHTTTFGGNPLACAAALATINVLLE--QNLPAQAEQKGDYLLDGFR--Q-LAR---EYPD---LVQEARGKGMLM  391 (459)
T ss_pred             ccCCcccCCCCCCCHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHH--H-HHH---hCCC---ceeeEEeceeEE
Confidence            2  111222223466666666665554322  2334444444444433110  0 000   0110   001225678999


Q ss_pred             EEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHH
Q 016612          303 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLD  378 (386)
Q Consensus       303 ~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~  378 (386)
                      .+.+.+......+.+.+..+|+.+....                         .....+|+.+.    .++++++++.|.
T Consensus       392 giel~~~~~~~~i~~~l~~~Gvl~~~~~-------------------------~~~~~lr~~Ppl~~t~~~id~~l~~l~  446 (459)
T PRK11522        392 AIEFVDNEIGYNFASEMFRQRVLVAGTL-------------------------NNAKTIRIEPPLTLTIEQCEQVLKAAR  446 (459)
T ss_pred             EEEecCchHHHHHHHHHHHCCeEEEecC-------------------------CCCCEEEEECCccCCHHHHHHHHHHHH
Confidence            9998665556778888877888654211                         02345888875    478888888888


Q ss_pred             HHHhcC
Q 016612          379 KALRTG  384 (386)
Q Consensus       379 ~~l~~~  384 (386)
                      ++++++
T Consensus       447 ~~l~~~  452 (459)
T PRK11522        447 KALAAM  452 (459)
T ss_pred             HHHHHH
Confidence            887653

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.67  E-value=1.6e-15  Score=143.31  Aligned_cols=290  Identities=13%  Similarity=0.103  Sum_probs=168.0

Q ss_pred             CCchHHHHHHHHHhhcCC---CceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhhc-----cc--CC-
Q 016612           53 GNPTRDALESLLAKLDKA---DRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVT-----PK--TG-  118 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~-----~~--~g-  118 (386)
                      .++...++.+.+.+.++.   +...+++||++|+.+.+.   ......+|+.-...|++.......+.     ..  ++ 
T Consensus        81 ~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~  160 (425)
T PRK07495         81 PYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGA  160 (425)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCC
Confidence            345666777778877643   367888999999864333   23344578877777766532111110     00  01 


Q ss_pred             --cEEEEeCCCC----------HHHHHhhhC-----CCceEEEEeCCCCCCcccc-c---HHHHHHHHHHcCCEEEEeCC
Q 016612          119 --VVVKRVNTCD----------LDEVASAIG-----PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNS  177 (386)
Q Consensus       119 --~~~~~v~~~d----------~~~l~~~~~-----~~~~~v~~~~~~nptG~~~-~---l~~i~~la~~~~~~li~D~a  177 (386)
                        ..+..++..+          ++++++.+.     +++++|+++.....+|.+. |   +++|.++|++||+++|+||+
T Consensus       161 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv  240 (425)
T PRK07495        161 MMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEV  240 (425)
T ss_pred             CCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEech
Confidence              1233333321          445566542     4688999987766677554 3   89999999999999999999


Q ss_pred             CCC-CCccC---C--CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH
Q 016612          178 IMS-PVLSR---P--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA  251 (386)
Q Consensus       178 ~~~-~~~~~---~--~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (386)
                      +.. +....   .  .....|+  .+++|.+++  |+++|+++++ +++.+.+.........+.++..+++....++.+.
T Consensus       241 ~tG~gr~G~~~a~~~~gv~pDi--~tlsK~l~~--G~pigav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~  315 (425)
T PRK07495        241 QTGFARTGKLFAMEHHEVAADL--TTMAKGLAG--GFPLAAVTGR-AEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIE  315 (425)
T ss_pred             hhcCCcCCCceeecccCCCCCE--EeehhhhcC--CccceEEEEc-HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence            762 11111   1  1123455  567999963  6789999987 4565544332223334556666665555554332


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-------HHhHHHHHhhcCccee
Q 016612          252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------LALSKHVVETTKYFSI  324 (386)
Q Consensus       252 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~gi  324 (386)
                      .  +.+.++++.+.+++.+.-.  . +..   .++..    ...++.|.++++.+.+       ......+.+.+...|+
T Consensus       316 ~--~~l~~~~~~~g~~l~~~L~--~-l~~---~~~~i----~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gv  383 (425)
T PRK07495        316 E--EDLCERANQLGNRLKQRLA--S-LRE---TVPEI----ADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGL  383 (425)
T ss_pred             h--chHHHHHHHHHHHHHHHHH--H-HHh---hCCCe----eeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCe
Confidence            1  2344444444444433210  0 000   11110    1225678888888732       1235567777777787


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhcC
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~~  384 (386)
                      .+...+.                         ..+.+|+.+    +.+++++.++.|.++|++.
T Consensus       384 l~~~~g~-------------------------~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~  422 (425)
T PRK07495        384 ILLTCGV-------------------------HGNVIRFLAPITIQDDVFAEALDILEASILEA  422 (425)
T ss_pred             EEeecCC-------------------------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence            6532110                         134588875    4588999999999998764

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.67  E-value=2e-14  Score=143.88  Aligned_cols=156  Identities=21%  Similarity=0.234  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHhhcCCCceEEe-CcHHHHHH-HHHHhc--------CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           56 TRDALESLLAKLDKADRALCF-TSGMAALA-AVTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~-~~gt~al~-~~~~~~--------~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      ...++++++++++|.++.-+. ++|+.|-. .+++..        ...++|+++...|++..    ..++..|++++.++
T Consensus       531 ~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP----asa~~~G~~Vv~V~  606 (939)
T TIGR00461       531 LIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP----ASAAMAGMQVVPVN  606 (939)
T ss_pred             HHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH----HHHHHCCCEEEEec
Confidence            578899999999999965444 44555543 333321        23467999999998775    44667799999998


Q ss_pred             CC-----CHHHHHhhhC---CCceEEEEeCCCCCCccccc-HHHHHHHHHHcCCEEEEeCCCCCCC--ccCCCCCCccEE
Q 016612          126 TC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIV  194 (386)
Q Consensus       126 ~~-----d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~-l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~~di~  194 (386)
                      ++     |+++|+++++   +++++|++++|+| +|.+.+ +++|+++||++|.++++|.++..+.  +.++.+.|+|++
T Consensus       607 ~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~  685 (939)
T TIGR00461       607 CDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVC  685 (939)
T ss_pred             cCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEE
Confidence            74     8999999997   4899999999999 788876 9999999999999999999996533  445677899999


Q ss_pred             Eeccccccc-----cCCCceEEEEEEcCh
Q 016612          195 MHSATKFIA-----GHSDVMAGVLAVKGE  218 (386)
Q Consensus       195 ~~S~sK~~~-----g~~g~~~G~i~~~~~  218 (386)
                      ++|.||+|+     |++|  .|++.+++.
T Consensus       686 ~~s~HKtf~~P~G~GGPg--~G~i~vr~~  712 (939)
T TIGR00461       686 HLNLHKTFCIPHGGGGPG--MGPIGVKSH  712 (939)
T ss_pred             EecCCccCCCCCCCCCCC--eEEEEEhhh
Confidence            999999887     5555  699999853

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.67  E-value=8.6e-15  Score=145.55  Aligned_cols=151  Identities=21%  Similarity=0.270  Sum_probs=118.6

Q ss_pred             CC-chHHHHHHHHHhhcCCCceEEeC-cHHHHH-HHHHHhc--------CCCCEEEecCCCCCcHHHHHhhhcccCCcEE
Q 016612           53 GN-PTRDALESLLAKLDKADRALCFT-SGMAAL-AAVTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (386)
Q Consensus        53 g~-~~~~~l~~~l~~~~g~~~~i~~~-~gt~al-~~~~~~~--------~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~  121 (386)
                      |. ....++++++++++|.+..-+.. +|+.+- ..++++.        ...++|+++...|++..    ..+...|+++
T Consensus       540 G~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp----asa~~~GieV  615 (954)
T PRK12566        540 GYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP----ASAQMAGMRV  615 (954)
T ss_pred             CHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH----HHHHHCCCEE
Confidence            54 36888999999999999766665 666664 3444421        12467889998997764    2355679999


Q ss_pred             EEeCCC-----CHHHHHhhhC---CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC--ccCCCCCCc
Q 016612          122 KRVNTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGA  191 (386)
Q Consensus       122 ~~v~~~-----d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~~  191 (386)
                      +.++.+     |+++|+++++   +++.+|++++|++-.+...++++|+++||++|+++++|.++..+.  +..+.+.|+
T Consensus       616 v~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GA  695 (954)
T PRK12566        616 VIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGA  695 (954)
T ss_pred             EEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCC
Confidence            999874     8999999987   688889999999866555679999999999999999999997544  345678899


Q ss_pred             cEEEeccccccccCCC
Q 016612          192 DIVMHSATKFIAGHSD  207 (386)
Q Consensus       192 di~~~S~sK~~~g~~g  207 (386)
                      |++++|+||||++|.|
T Consensus       696 Di~~~s~HKtf~~P~G  711 (954)
T PRK12566        696 DVSHMNLHKTFCIPHG  711 (954)
T ss_pred             CEEEecCCcccCcCcc
Confidence            9999999999986665

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.66  E-value=1.4e-14  Score=147.21  Aligned_cols=157  Identities=23%  Similarity=0.297  Sum_probs=123.0

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHh-cCC--CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCH
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAV-THL-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL  129 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~-~~~--g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~  129 (386)
                      ...++++.+++++|.+  +.-++.++|++..++ ++. +++  +++|++++..|+.+..++...++..|++++.++..+ 
T Consensus       122 al~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~-  200 (954)
T PRK05367        122 ALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK-  200 (954)
T ss_pred             HHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc-
Confidence            3566778899999998  566777777777643 343 445  489999999999998888888889999999998753 


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCC-CCCCccCCCCCCccEEEeccccc-----cc
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKF-----IA  203 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~-~~~~~~~~~~~~~di~~~S~sK~-----~~  203 (386)
                       ++.   ++++..+++.+| |.+|.+.|+++|+++||++|+++++|..+ +.....++.++|+|++++|.+||     ++
T Consensus       201 -d~~---~~~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~G  275 (954)
T PRK05367        201 -ALD---HDDVFGVLLQYP-GTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFG  275 (954)
T ss_pred             -CCC---cccEEEEEEecC-CCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCC
Confidence             111   345666666666 45899999999999999999999999976 44555577889999999999999     76


Q ss_pred             cCCCceEEEEEEcChhHHH
Q 016612          204 GHSDVMAGVLAVKGERLAK  222 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~  222 (386)
                      || +  .|+++++++ +.+
T Consensus       276 GP-~--aGflavr~~-~~r  290 (954)
T PRK05367        276 GP-H--AAYFAVRDA-YKR  290 (954)
T ss_pred             CC-C--EEEEEECHH-HHh
Confidence            76 3  799999854 433

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.66  E-value=1.3e-14  Score=137.78  Aligned_cols=313  Identities=13%  Similarity=0.095  Sum_probs=176.2

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---cCCC
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---LGTG   93 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~~~g   93 (386)
                      ...+|..+|.+.++......    ...+..... .++...++.+.|.+..+.  +...+++||++|+.+.+.+   ....
T Consensus        52 ~~~lGh~~p~v~~Ai~~ql~----~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr  127 (443)
T PRK08360         52 VQNVGHNNPRVVKAIKEQTD----KLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKR  127 (443)
T ss_pred             hcccCCCCHHHHHHHHHHHH----hccCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCC
Confidence            44577777776654221111    111111111 245566777778887654  3677889999998643332   2344


Q ss_pred             CEEEecCCCCCcH-HHHHhhhcc-------cCC--cEEEEeCCC-----------------CHHHHHhhhC-----CCce
Q 016612           94 EEIVAGDDLYGGT-DRLLSRVTP-------KTG--VVVKRVNTC-----------------DLDEVASAIG-----PWTK  141 (386)
Q Consensus        94 ~~Vlv~~~~~~~~-~~~~~~~~~-------~~g--~~~~~v~~~-----------------d~~~l~~~~~-----~~~~  141 (386)
                      ..|+.-...|++. ...+ ....       .++  ..+.+++..                 +.+.+++.+.     ++++
T Consensus       128 ~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iA  206 (443)
T PRK08360        128 RKILSYLRSYYGSTYGAM-SLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVA  206 (443)
T ss_pred             CeEEEEeCCcCCcCHHHH-HhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeE
Confidence            5677666666554 2222 1100       001  112222221                 2334555552     5799


Q ss_pred             EEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEE
Q 016612          142 LVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAG  211 (386)
Q Consensus       142 ~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G  211 (386)
                      +|+++..+|++|.+.+    +++|.++|++||+++|+||++.. +....     ......|++  +++|.++  +|+++|
T Consensus       207 Avi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l~--~G~pig  282 (443)
T PRK08360        207 ALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPLG--GGLPIS  282 (443)
T ss_pred             EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEE--Eeccccc--CCceeE
Confidence            9999988899998875    89999999999999999999862 22111     112346766  5699996  368999


Q ss_pred             EEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchh
Q 016612          212 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  289 (386)
Q Consensus       212 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  289 (386)
                      +++++ +++.+.+...........++..+.++...++.+..  ..++..+..+.+.+.+++...    ..+.+       
T Consensus       283 av~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~v-------  350 (443)
T PRK08360        283 ATIGR-AEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKK----KHELI-------  350 (443)
T ss_pred             EEEEc-HHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH----hCCCe-------
Confidence            99987 55665554332233344556666665555544322  122222333333333332110    00111       


Q ss_pred             hhhhccCCCCceEEEEeCC--------HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeE
Q 016612          290 LHYSQAKGAGSVLSFLTGS--------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  361 (386)
Q Consensus       290 i~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  361 (386)
                         .+.++.|.++.+.+.+        ......+.+.+..+|+.+...                           ..+.+
T Consensus       351 ---~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------------------------~~~~l  400 (443)
T PRK08360        351 ---GDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF---------------------------SGNVL  400 (443)
T ss_pred             ---eeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec---------------------------CCCEE
Confidence               1225678888887731        123556777777778754321                           12348


Q ss_pred             EEEec----cCChHHHHHHHHHHHhc
Q 016612          362 RISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       362 Ris~~----~~~~~~~i~~l~~~l~~  383 (386)
                      |+++.    .++++++++.+.++++.
T Consensus       401 r~~P~l~~t~~~id~~~~~l~~~l~~  426 (443)
T PRK08360        401 RIQPPLTIEKEVLDEGLDILEEAIED  426 (443)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            88765    47788888888887764

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.66  E-value=1e-14  Score=138.97  Aligned_cols=288  Identities=17%  Similarity=0.214  Sum_probs=169.4

Q ss_pred             CchHHHHHHHHHhhcCC---CceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhhcc-----cCC----
Q 016612           54 NPTRDALESLLAKLDKA---DRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTP-----KTG----  118 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~-----~~g----  118 (386)
                      ++...++.+.+.+.++.   +..++++||++|+.+.+.   .....++|+..+..|++.......+..     ..+    
T Consensus        98 ~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~  177 (443)
T PRK06058         98 YEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPF  177 (443)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCC
Confidence            35667777888777642   367888999999864333   233457888888888776422111110     000    


Q ss_pred             -cEEEEeCC----CC---------------HHHHHhhhC-CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEE
Q 016612          119 -VVVKRVNT----CD---------------LDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLL  173 (386)
Q Consensus       119 -~~~~~v~~----~d---------------~~~l~~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li  173 (386)
                       ..+..++.    .+               .+.+++.+. +++.+|+++..+...|.+.|    +++|.++|++||+++|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI  257 (443)
T PRK06058        178 APEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFI  257 (443)
T ss_pred             CCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence             11222221    11               223444443 67889998877766666654    8999999999999999


Q ss_pred             EeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC
Q 016612          174 VDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (386)
Q Consensus       174 ~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (386)
                      .||++.. +-..     ......+|+++.  +|.+++  |+++|+++++ +++.+.+.........+.++...+++...+
T Consensus       258 ~DEV~tGfgRtG~~fa~~~~gv~PDiv~~--gK~l~~--G~Pi~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L  332 (443)
T PRK06058        258 ADEVQTGFARTGAWFACEHEGIVPDLITT--AKGIAG--GLPLSAVTGR-AEIMDAPHPGGLGGTYGGNPVACAAALAAI  332 (443)
T ss_pred             EeccccCCCcChhhhHHHhcCCCCCEEEE--cccccC--CCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHH
Confidence            9999852 2111     112345688865  799963  6789999986 456554433322333456666666666655


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-------CHHhHHHHHhhcC
Q 016612          248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------SLALSKHVVETTK  320 (386)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~  320 (386)
                      +.+..  +...++.+.+.+++.+.-.  .+    ...++.    ..+.++.|.++.+.+.       +......+.+++.
T Consensus       333 ~~~~~--~~l~~~~~~~g~~l~~~L~--~l----~~~~~~----i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~  400 (443)
T PRK06058        333 ETIEE--DDLVARARQIEALMTDRLR--AL----AAEDDR----IGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAH  400 (443)
T ss_pred             HHHHH--cCHHHHHHHHHHHHHHHHH--HH----HhhCCc----EEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHH
Confidence            54322  2334444444444432110  00    000100    0122567888888872       2345667888887


Q ss_pred             cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          321 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       321 ~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      ..|+.+.++..                         ..+++|+.+.    .+++++.++.+.++|++
T Consensus       401 ~~Gv~~~~~~~-------------------------~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        401 AAGVIVLTCGT-------------------------YGNVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             HCCeEEeccCC-------------------------CCCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence            88887654321                         1245888764    48888888888888865

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.65  E-value=2.3e-13  Score=124.88  Aligned_cols=206  Identities=21%  Similarity=0.182  Sum_probs=126.8

Q ss_pred             HHHHHHhhcCCC----c-eEEeCcHHHHH-HHHHHhcCCCCEEEecCCCCCcHHHHHhhhccc-------CCcEEEEeCC
Q 016612           60 LESLLAKLDKAD----R-ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK-------TGVVVKRVNT  126 (386)
Q Consensus        60 l~~~l~~~~g~~----~-~i~~~~gt~al-~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-------~g~~~~~v~~  126 (386)
                      ..++++++|+.+    . .+-.-||+.|. .++.++++|||+|+..+..++++..+ ......       ...+.+.++.
T Consensus        71 a~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlsh-g~~~~~~~~~~~~~~~~~~~y~~  149 (399)
T PF00464_consen   71 AIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSH-GSSVNFKKISASGLYFESVPYPV  149 (399)
T ss_dssp             HHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGG-T-TTSHSBSSHHHHHSEEEEEEB
T ss_pred             HHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccc-cccccccccccccceEEEEeeee
Confidence            456677889988    4 34456888775 46788999999999888766655311 011111       1124444432


Q ss_pred             C------CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC-----CCCccCCCCCCccEE
Q 016612          127 C------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIV  194 (386)
Q Consensus       127 ~------d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-----~~~~~~~~~~~~di~  194 (386)
                      +      |.+++++.+. .++++|++...++|  ...|++++.++|++.|.+|++|.+|.     .+.+++|+.. +|++
T Consensus       150 d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvv  226 (399)
T PF00464_consen  150 DPDTGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVV  226 (399)
T ss_dssp             -TTTSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEE
T ss_pred             ecCCCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ceEE
Confidence            2      8899998876 68999998876654  56799999999999999999999986     4567788875 9999


Q ss_pred             EeccccccccCCCceEEEEEEc-------------ChhHHHHHHHhhhhcCCCCChhhH-----HHHHhcCC-cHHHHHH
Q 016612          195 MHSATKFIAGHSDVMAGVLAVK-------------GERLAKELYFLQNAEGSGLAPFDC-----WICLRGVK-TMALRVE  255 (386)
Q Consensus       195 ~~S~sK~~~g~~g~~~G~i~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~  255 (386)
                      ++|+||+|.||.   +|+|.++             ++++.+++.........+......     .++...+. .+..+.+
T Consensus       227 t~sThKtl~GPr---ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~  303 (399)
T PF00464_consen  227 TGSTHKTLRGPR---GGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAK  303 (399)
T ss_dssp             EEESSGGG-SSS----EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             EeeccccccccC---ceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHH
Confidence            999999998875   6999998             466777666544332222122111     11122233 3567788


Q ss_pred             HHHHHHHHHHHHHhhCC
Q 016612          256 KQQDNAQKIAEFLASHP  272 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~  272 (386)
                      +..+|++.|.+.|.+..
T Consensus       304 qVv~NAk~La~~L~~~G  320 (399)
T PF00464_consen  304 QVVKNAKALAEALQERG  320 (399)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhCC
Confidence            88999999999999874

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.65  E-value=7.7e-15  Score=140.21  Aligned_cols=288  Identities=14%  Similarity=0.165  Sum_probs=163.4

Q ss_pred             CchHHHHHHHHHhhcCC---CceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhhccc-------CC--
Q 016612           54 NPTRDALESLLAKLDKA---DRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPK-------TG--  118 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-------~g--  118 (386)
                      ++...++.+.|.++++.   +...+++||++|+.+.+.   ......+|+.-..+|++.......+...       ++  
T Consensus        96 ~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~  175 (451)
T PRK06918         96 YEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPF  175 (451)
T ss_pred             cHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCC
Confidence            45667777778887742   367888999999864333   2333456777777776653221121110       00  


Q ss_pred             -cEEEEeCCCC-----------------HHHHHhhh-----CCCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCE
Q 016612          119 -VVVKRVNTCD-----------------LDEVASAI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGAL  171 (386)
Q Consensus       119 -~~~~~v~~~d-----------------~~~l~~~~-----~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~  171 (386)
                       ..+..++..+                 .+.+++.+     .+++.+|+++..+...|.+.+    +++|.++|++||++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gil  255 (451)
T PRK06918        176 APEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGIL  255 (451)
T ss_pred             CCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence             1122222110                 12233322     256888988887766676553    89999999999999


Q ss_pred             EEEeCCCCC-CCcc---CCCCC--CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          172 LLVDNSIMS-PVLS---RPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       172 li~D~a~~~-~~~~---~~~~~--~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      +|+||++.. +...   .....  ..|++  |+||.++  +|+++|+++++ +++.+.+.........+.++..+.++..
T Consensus       256 lI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~--~G~pig~v~~~-~~i~~~~~~~~~~~T~~g~~l~~aaa~a  330 (451)
T PRK06918        256 FVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLG--AGVPISGVIGR-KEIMDESAPGELGGTYAGSPLGCAAALA  330 (451)
T ss_pred             EEEeccccCcCccCceehhHhcCCCCCEE--eeehhhc--CCCccEEEEEc-HHHHhccCCCCcCcCCCcCHHHHHHHHH
Confidence            999999763 2211   11112  36755  7899995  36899999987 4565544332333334556666666444


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--------CHHhHHHHHh
Q 016612          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVE  317 (386)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~l~~  317 (386)
                      .++.+.  .+...++.+.+.+.+.+...  . +..   .++.    ....++.|.++.+.+.        +.....++.+
T Consensus       331 ~l~~i~--~~~~~~~~~~~g~~l~~~l~--~-l~~---~~~~----~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~  398 (451)
T PRK06918        331 VLDIIE--KENLNDRAIELGKVVMNRFE--E-MKN---KYNC----IGDVRGLGAMCAFELVQDRKTKEPDKTLTANICK  398 (451)
T ss_pred             HHHHHH--HCCHHHHHHHHHHHHHHHHH--H-HHh---hCCC----ceeeccceeEEEEEEccCCCcCCCcHHHHHHHHH
Confidence            443221  12233344444443332110  0 000   0110    0112456788887662        3345677888


Q ss_pred             hcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       318 ~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      .+...|+.+.++..                         ..+++|++++    .+++++.++.|.+++++
T Consensus       399 ~~~~~Gvlv~~~~~-------------------------~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~  443 (451)
T PRK06918        399 EANKRGLLLLSAGT-------------------------YGNVIRVLMPLVITDEQLEEGLTIIEESLQA  443 (451)
T ss_pred             HHHHCCeEEeecCC-------------------------CCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            88888887655432                         1245999975    37788888888887764

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=7.4e-16  Score=137.76  Aligned_cols=285  Identities=19%  Similarity=0.188  Sum_probs=186.2

Q ss_pred             CC-chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHH
Q 016612           53 GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD  130 (386)
Q Consensus        53 g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~  130 (386)
                      |. ...+++++..+++.|.+++++++-|.+... .+-.++.||.-|+..+..|.+..    .-++..|+.++.+..+|..
T Consensus       179 G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHNdm~  254 (519)
T KOG1357|consen  179 GTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLI----TGARLSGATTRVFRHNDMQ  254 (519)
T ss_pred             ccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchhee----ccccccCceEEEEecCCHH
Confidence            54 378999999999999999999999976554 45668899998888888887763    5577889999999999999


Q ss_pred             HHHhhhC-------CCc------eEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----------CCC
Q 016612          131 EVASAIG-------PWT------KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----------RPL  187 (386)
Q Consensus       131 ~l~~~~~-------~~~------~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----------~~~  187 (386)
                      +||+.+.       ++|      -+|+++....+-|.+.++.++.++++++..+++.||+++.|...          .+.
T Consensus       255 ~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d  334 (519)
T KOG1357|consen  255 GLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVD  334 (519)
T ss_pred             HHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCC
Confidence            9988875       222      26667788889999999999999999999999999999876653          223


Q ss_pred             CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh--hhcCCCCChhhHHHHHhcCC---------cHHHHHHH
Q 016612          188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVK---------TMALRVEK  256 (386)
Q Consensus       188 ~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  256 (386)
                      ..+.||+.+++.|++++ +   +|++.++ +++.+.++.-.  ...+..++++.+...+.++.         .-..+.++
T Consensus       335 ~~dvDImMGtftKSfga-~---GGyiags-k~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~  409 (519)
T KOG1357|consen  335 PEDVDIMMGTFTKSFGA-A---GGYIAGS-KELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIER  409 (519)
T ss_pred             chhheeecceehhhccc-c---cceecCc-HHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHH
Confidence            34678999999999954 3   5888887 44555443221  12234555554444433332         22455566


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLIS  336 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~  336 (386)
                      +.+|...++..+++..    ++.-+-+              .++++.+.+-.+.....+-+++....+.+-.      +.
T Consensus       410 l~~ns~yfr~~l~~~g----fivyG~~--------------dSpVvplll~~~~k~~~f~r~~l~~nigvVv------vg  465 (519)
T KOG1357|consen  410 LAENSRYFRWELQKMG----FIVYGNN--------------DSPVVPLLLYGPAKIVAFSREMLERNIGVVV------VG  465 (519)
T ss_pred             HHhhhHHHHHhhhcCc----EEEecCC--------------CCCcceeeecCcccccHHHHHHHhcCceEEE------Ee
Confidence            6666666655555432    2221211              1233444332222233333344333333221      22


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          337 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       337 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      +|+..              +-++.+|++.+..++.+.++.+.+++++.
T Consensus       466 fPatp--------------l~e~r~R~c~Sa~ht~e~ld~~l~~i~~~  499 (519)
T KOG1357|consen  466 FPATP--------------LLESRARFCLSASHTKEDLDRALEVIDRV  499 (519)
T ss_pred             CCCch--------------HHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence            34321              11344899998877777777777766554

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.65  E-value=5e-14  Score=121.31  Aligned_cols=287  Identities=18%  Similarity=0.183  Sum_probs=179.3

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEeCcHHH-HHH-HHHHhc--CCCCEEEecCCC-CCcHHHHHhhhcccCCcEEEEeCCCCH
Q 016612           56 TRDALESLLAKLDKAD-RALCFTSGMA-ALA-AVTHLL--GTGEEIVAGDDL-YGGTDRLLSRVTPKTGVVVKRVNTCDL  129 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~gt~-al~-~~~~~~--~~g~~Vlv~~~~-~~~~~~~~~~~~~~~g~~~~~v~~~d~  129 (386)
                      +-+.+-.+++.+.|+. .+++++.+|+ .++ .+.+.+  .+|+.|++++-. |+.-..+....+...+.....--.+.+
T Consensus        77 lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P  156 (407)
T COG3844          77 LPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAP  156 (407)
T ss_pred             chhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeCh
Confidence            3456777888888887 6777777764 465 444443  458899988764 333333334444444433222223477


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC-CCCccEEEeccccccccCCCc
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDV  208 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~-~~~~di~~~S~sK~~~g~~g~  208 (386)
                      +++++++++++.+|++++++.-||...++.+|.+++|++|++++.|-+|+.|..+-.+ ..|+|+-+++.+|+++|.+|-
T Consensus       157 ~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGa  236 (407)
T COG3844         157 RALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGA  236 (407)
T ss_pred             HHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCC
Confidence            8999999999999999999999999999999999999999999999999999876333 468999999999999977775


Q ss_pred             eEEEEEEcChhHHHHHHHh----------------hhhcC-----CCCChhhHHHH-HhcCCc-----HHHHHHHHHHHH
Q 016612          209 MAGVLAVKGERLAKELYFL----------------QNAEG-----SGLAPFDCWIC-LRGVKT-----MALRVEKQQDNA  261 (386)
Q Consensus       209 ~~G~i~~~~~~~~~~~~~~----------------~~~~~-----~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~  261 (386)
                       .++++..++........+                ....+     ++..+...... ..+++.     +.+-+++....+
T Consensus       237 -pa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLT  315 (407)
T COG3844         237 -PAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALT  315 (407)
T ss_pred             -ceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHH
Confidence             455555444322211110                00000     12222222222 222321     233333344444


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhh-ccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYS-QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      ..+.+.++.+..-           -+..+..+ ....+|.-+++..++   ..++++.|..+|+..-   +         
T Consensus       316 d~fieLvEa~~~~-----------~~l~l~tPr~~~~rGsqvS~~hp~---~~~V~qaLi~rGVigD---~---------  369 (407)
T COG3844         316 DYFIELVEARCEY-----------YGLTLVTPRAHEERGSQVSLYHPH---GYQVMQALIDRGVIGD---F---------  369 (407)
T ss_pred             HHHHHHHHhcccc-----------CCcEEeccchhhhccceeeEecCc---HHHHHHHHHHcCcccc---c---------
Confidence            4455555543210           01111111 112356778887764   5567777777777422   1         


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEec-----cCChHHHHHHHHHHHhcC
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i~~l~~~l~~~  384 (386)
                                     ..++.+|+.++     ..|+-..++.|.++|++.
T Consensus       370 ---------------R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         370 ---------------REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             ---------------cCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence                           12566999985     499999999999999864

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.65  E-value=7.5e-14  Score=122.87  Aligned_cols=253  Identities=22%  Similarity=0.279  Sum_probs=148.9

Q ss_pred             hHHHHHHHHHhhcCCCceEE---eCcHHHHHH-HHHHhcCCCCEEE-ecCCCCCcHHHHH------hhhcccCCcEEEEe
Q 016612           56 TRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIV-AGDDLYGGTDRLL------SRVTPKTGVVVKRV  124 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~---~~~gt~al~-~~~~~~~~g~~Vl-v~~~~~~~~~~~~------~~~~~~~g~~~~~v  124 (386)
                      .|+.+++-.+++||.++.++   +.|||+||. ++.++++|||+.+ +...-|.....++      ...++.+|+.+..+
T Consensus        55 GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v  134 (403)
T PF06838_consen   55 GRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREV  134 (403)
T ss_dssp             HHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE-
T ss_pred             cHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEE
Confidence            69999999999999999887   469999997 7788999999998 4444565555444      12346788999999


Q ss_pred             CCC-----CHHHHHhhhCCCceEEEEeCC----CCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCC-ccCCCCCCcc
Q 016612          125 NTC-----DLDEVASAIGPWTKLVWVESP----TNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPV-LSRPLELGAD  192 (386)
Q Consensus       125 ~~~-----d~~~l~~~~~~~~~~v~~~~~----~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~-~~~~~~~~~d  192 (386)
                      +..     |.+.++++++++||+|++.-.    ..|+=.+.+++++.+++|+.  ++++++|.+|+... ...|.+.|+|
T Consensus       135 ~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGAD  214 (403)
T PF06838_consen  135 PLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGAD  214 (403)
T ss_dssp             -B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-S
T ss_pred             eecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchh
Confidence            864     899999999999999998622    22222223566677777664  89999999998765 3457788999


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcC----CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Q 016612          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG----SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       193 i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  268 (386)
                      ++.+|+-|..+|.--.-+|+++++. ++.+......+..|    .+.+......+.+++-....-..+-.+-+......+
T Consensus       215 l~aGSLIKNpGGgiAptGGYIaGr~-~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~QGlFlAP~vV~eAlKgaif~A~~f  293 (403)
T PF06838_consen  215 LMAGSLIKNPGGGIAPTGGYIAGRK-DLVERAAYRLTAPGIGKEVGATLGTNRLMFQGLFLAPHVVGEALKGAIFAAALF  293 (403)
T ss_dssp             EEEEETTSGGGTTT-SS-EEEEESH-HHHHHHHHHHS-TTTGGGSS--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             heeccceeCCCCCccCcCCEEechH-HHHHHHHhhhcCCccccccccCcchHHHHHhHHhhchHHHHHHHHHHHHHHHHH
Confidence            9999999988753333589999984 45554433333222    223333334444443322333333344455555566


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcce
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  323 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g  323 (386)
                      ++..         .+..|...    . +..--+-++.+++++....|++......
T Consensus       294 e~lG---------~~v~P~~~----~-~R~DiIQai~l~~~e~l~~FC~~iQ~~s  334 (403)
T PF06838_consen  294 EKLG---------FEVSPKPD----D-PRSDIIQAIELGSPEKLIAFCQGIQAAS  334 (403)
T ss_dssp             HHTT----------EEES-TT----S---SSS-EEEE-SSHHHHHHHHHHHHHTS
T ss_pred             HHcC---------CcCCCCCC----C-CCCceEEEEECCCHHHHHHHHHHHHhcC
Confidence            6553         11111110    1 1123456788888888888888765543

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PLN02263 serine decarboxylase

Probab=99.64  E-value=2.2e-13  Score=127.45  Aligned_cols=209  Identities=16%  Similarity=0.174  Sum_probs=148.3

Q ss_pred             hHHHHHHHHHhhcCCC----ceEEeCcHHHHH-HHHHHh--cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD----RALCFTSGMAAL-AAVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~----~~i~~~~gt~al-~~~~~~--~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      +-.++-+++++++|.+    ..+++++||++. .++...  ..+...+++++..|.+..    +++...|++++.++.+ 
T Consensus       134 ~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~----KAa~llgi~~~~Vp~d~  209 (470)
T PLN02263        134 FEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDTLV  209 (470)
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHH----HHHHhcCCcceEeccCC
Confidence            5667788899999864    268889999874 555443  224457889999998885    6677888888888864 


Q ss_pred             ----CHHHHHhhhCCC---ceEEEEeCCCCCCcccccHHHHHHHHHHcCC-----EEEEeCCCCCCCcc---C----CCC
Q 016612          128 ----DLDEVASAIGPW---TKLVWVESPTNPRQQICDIRKIAEMAHAHGA-----LLLVDNSIMSPVLS---R----PLE  188 (386)
Q Consensus       128 ----d~~~l~~~~~~~---~~~v~~~~~~nptG~~~~l~~i~~la~~~~~-----~li~D~a~~~~~~~---~----~~~  188 (386)
                          |+++|++++.++   +-+|+.+..+.++|.+.|+++|.++|+++|+     ++++|++++....+   .    ...
T Consensus       210 ~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~  289 (470)
T PLN02263        210 SGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFK  289 (470)
T ss_pred             CCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCC
Confidence                899999888643   4567778899999999999999999999997     99999999754432   1    111


Q ss_pred             CCccEEEeccccccccCCCceEEEEEEcChhHHHHH----HHhhh----hcCC-C-CChhhHHHHHh--cCCcHHHHHHH
Q 016612          189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL----YFLQN----AEGS-G-LAPFDCWICLR--GVKTMALRVEK  256 (386)
Q Consensus       189 ~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~----~~~~~----~~~~-~-~~~~~~~~~~~--~~~~~~~~~~~  256 (386)
                      ..+|-+..++|||++.|-+  +|+++.+++.+ +.+    ..+..    ..++ . ......|+.++  +.+.+..+.++
T Consensus       290 ~~vDSIsvD~HK~l~~P~~--cgvll~R~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~  366 (470)
T PLN02263        290 KPIGSVSVSGHKFVGCPMP--CGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQK  366 (470)
T ss_pred             cCccEEEECCccccCCCcC--EEEEEEehhhH-hhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            2478999999999988876  89998886433 211    11111    1111 1 12344455544  34556677777


Q ss_pred             HHHHHHHHHHHHhhC
Q 016612          257 QQDNAQKIAEFLASH  271 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~  271 (386)
                      ..+.++.+.+.+++.
T Consensus       367 ~~~~A~~l~~~l~~~  381 (470)
T PLN02263        367 CLRNAHYLKDRLREA  381 (470)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            778888888888765

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.63  E-value=1.5e-14  Score=137.25  Aligned_cols=321  Identities=16%  Similarity=0.127  Sum_probs=186.8

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEeCcHHHHHHHHHH
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTH   88 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~gt~al~~~~~   88 (386)
                      +.+++..+  +.++|..+|.+.++.....   .. ....|  ...+...++.+.+.+++ +.+..++++||++|+...+.
T Consensus        51 ~~lD~~~g~~~~~lGh~~p~i~~a~~~~~---~~-~~~~~--~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik  124 (426)
T PRK00062         51 EYIDYVGSWGPMILGHAHPEVVEAVIEAA---EK-GLSFG--APTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIR  124 (426)
T ss_pred             EEEEcccchhhhhcCCCCHHHHHHHHHHH---Hh-CCcCC--CCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHH
Confidence            44555433  3557777766665322111   11 11111  13356667888888765 45678889999999864433


Q ss_pred             h---cCCCCEEEecCCCCCcHHHHHhhhcc---------c-CCc------EEEEeCCCCHHHHHhhhC---CCceEEEEe
Q 016612           89 L---LGTGEEIVAGDDLYGGTDRLLSRVTP---------K-TGV------VVKRVNTCDLDEVASAIG---PWTKLVWVE  146 (386)
Q Consensus        89 ~---~~~g~~Vlv~~~~~~~~~~~~~~~~~---------~-~g~------~~~~v~~~d~~~l~~~~~---~~~~~v~~~  146 (386)
                      +   ...++.|+..++.|++..........         . .+.      ....++..|++++++.+.   +++++|+++
T Consensus       125 ~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivE  204 (426)
T PRK00062        125 LARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVE  204 (426)
T ss_pred             HHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEe
Confidence            2   33467899999988886422111100         0 011      123344568889988774   478899999


Q ss_pred             CCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcC
Q 016612          147 SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (386)
Q Consensus       147 ~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~  217 (386)
                      .....+|.+.+    +++|.++|++||+++|+||++......     +......|+  .+++|.+++  |+++|+++++ 
T Consensus       205 pv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi--~~~gK~l~~--G~p~ga~~~~-  279 (426)
T PRK00062        205 PVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDL--TTLGKIIGG--GLPVGAFGGR-  279 (426)
T ss_pred             CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcch--HhhhhHhhC--CCcceeeeEH-
Confidence            77777899987    899999999999999999998622111     111223565  478999963  5678888876 


Q ss_pred             hhHHHHHHHh---hhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhh
Q 016612          218 ERLAKELYFL---QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  292 (386)
Q Consensus       218 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~  292 (386)
                      +++.+.+...   ......+.++..++++...++.+..  ..++..+..+.+.+.+++..          +.++..    
T Consensus       280 ~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~----  345 (426)
T PRK00062        280 REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAA----------KKAGIP----  345 (426)
T ss_pred             HHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----------HHcCCc----
Confidence            5566655321   1112234566666665555543322  22333333444444443210          000000    


Q ss_pred             hccCCCCceEEEEeCC-------------HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCC
Q 016612          293 SQAKGAGSVLSFLTGS-------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  359 (386)
Q Consensus       293 ~~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  359 (386)
                      ...++.|.++.+.+.+             ......+.+.+..+|+.+.+...                           +
T Consensus       346 ~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~---------------------------~  398 (426)
T PRK00062        346 LTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQF---------------------------E  398 (426)
T ss_pred             eEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCc---------------------------C
Confidence            0124567888887742             13346788888888886544221                           1


Q ss_pred             eEEEE--eccCChHHHHHHHHHHHhcC
Q 016612          360 LVRIS--VGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       360 ~iRis--~~~~~~~~~i~~l~~~l~~~  384 (386)
                      .+|++  ++.++++++++.+.+++++.
T Consensus       399 ~~~~~~~~t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        399 AGFVSAAHTDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             ceeeeccCCHHHHHHHHHHHHHHHHhh
Confidence            13443  45688999999999988753

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.63  E-value=1.2e-14  Score=127.78  Aligned_cols=166  Identities=20%  Similarity=0.241  Sum_probs=121.4

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcHH-HHHHHHHHhc--CCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~~~~~~~--~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      -.|+.+ |.+ .|+.+.+.+.+.-|..   +.|..|+|+ .|+..++.++  .+++.|++|-|-|+-|..    .....|
T Consensus       107 GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsA----ti~l~~  182 (475)
T KOG0258|consen  107 GAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSA----TISLLG  182 (475)
T ss_pred             cccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHH----HHHHhC
Confidence            358888 888 7999999999988742   455556664 8888776643  567889999999988752    233444


Q ss_pred             cEEEEeCC-------CCHHHHHhhhC-----CCceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCCCc
Q 016612          119 VVVKRVNT-------CDLDEVASAIG-----PWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVL  183 (386)
Q Consensus       119 ~~~~~v~~-------~d~~~l~~~~~-----~~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~~~  183 (386)
                      ...+.+-.       .|.++|++.++     -+++++++.||.||||.+.   .+++|..+|.+++++++.||+|....+
T Consensus       183 ~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy  262 (475)
T KOG0258|consen  183 GTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVY  262 (475)
T ss_pred             CcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhcc
Confidence            44333322       28888887765     2788999999999999997   489999999999999999999753322


Q ss_pred             cCC-------------CCCCc----cEEEeccccccccCCCceEEEEEEc
Q 016612          184 SRP-------------LELGA----DIVMHSATKFIAGHSDVMAGVLAVK  216 (386)
Q Consensus       184 ~~~-------------~~~~~----di~~~S~sK~~~g~~g~~~G~i~~~  216 (386)
                      ...             .....    -+.+.|.||.+.|-.|-|+|++-.-
T Consensus       263 ~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~  312 (475)
T KOG0258|consen  263 TTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESL  312 (475)
T ss_pred             CCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecc
Confidence            210             01111    3667789999999899999997654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.63  E-value=4.1e-14  Score=143.34  Aligned_cols=154  Identities=23%  Similarity=0.237  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHh-cCC--CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCH
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAV-THL-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL  129 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~-~~~--g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~  129 (386)
                      ...+.+..+++++|.+  +.-++.++|++..++ ++. +++  +|+|++++..|+.+..++...++..|++++.++..+.
T Consensus       149 al~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~  228 (993)
T PLN02414        149 SLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF  228 (993)
T ss_pred             HHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh
Confidence            3666788899999998  566677777777644 443 454  4789999999999998888888999999999987542


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC--ccCCCCCCccEEEecccccc-----
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSATKFI-----  202 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~~di~~~S~sK~~-----  202 (386)
                      +    ...+.+..+++..|++ +|.+.|+++|.++||++|+++++ .++..+.  +.++.++|+||++++.+||.     
T Consensus       229 ~----~~~~~v~~vlvq~P~~-~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~  302 (993)
T PLN02414        229 D----YSSGDVCGVLVQYPAT-DGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGY  302 (993)
T ss_pred             c----cccCceEEEEEecCCC-CeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCC
Confidence            2    1233455555555554 89999999999999999999999 6554433  33477889999999999997     


Q ss_pred             ccCCCceEEEEEEcCh
Q 016612          203 AGHSDVMAGVLAVKGE  218 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~  218 (386)
                      +||   ..|+++++++
T Consensus       303 GGP---~aGflavr~~  315 (993)
T PLN02414        303 GGP---HAAFLATSQE  315 (993)
T ss_pred             CCC---CeeEEEECHH
Confidence            343   3799999864

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.63  E-value=1.9e-14  Score=135.62  Aligned_cols=211  Identities=22%  Similarity=0.218  Sum_probs=148.8

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeCcHHHHHH-HHHHh----cC-C---C------CEEEecCCCCCcHHHHHhhhcccC
Q 016612           56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHL----LG-T---G------EEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~gt~al~-~~~~~----~~-~---g------~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      +-+++-.+++++++.+   ...++++||+++. ++++.    ++ .   +      .+|+++...|.+..    +.+...
T Consensus       102 ~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~----Kaa~~l  177 (460)
T COG0076         102 LEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFE----KAARYL  177 (460)
T ss_pred             HHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHH----HHHHHh
Confidence            4566777888888874   4788999998853 44331    10 1   1      16899999998885    667778


Q ss_pred             CcEEEEeCCC------CHHHHHhhhCCCceE--EEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc--CCC
Q 016612          118 GVVVKRVNTC------DLDEVASAIGPWTKL--VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--RPL  187 (386)
Q Consensus       118 g~~~~~v~~~------d~~~l~~~~~~~~~~--v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~--~~~  187 (386)
                      |++.+.++..      |++++++++++++..  |+.+..+.++|.+.|+++|.++|+++++++++|+|++....+  +..
T Consensus       178 G~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~  257 (460)
T COG0076         178 GLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD  257 (460)
T ss_pred             CCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence            8777766643      899999999987776  888999999999999999999999999999999999865542  111


Q ss_pred             ------CCCccEEEeccccccccCCCceEEEEEEcChh-HHHHHHHhhhhcC-----------CCC--ChhhHHHHHh--
Q 016612          188 ------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFLQNAEG-----------SGL--APFDCWICLR--  245 (386)
Q Consensus       188 ------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~-~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~--  245 (386)
                            -.++|.++.|+||++..|.|  +|+++.++++ +.+.........+           +..  ....+|+...  
T Consensus       258 ~~~~f~l~~vdSIt~d~HK~g~aP~~--~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~l  335 (460)
T COG0076         258 GRWDFGLEGVDSITVDGHKYGLAPIG--CGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRL  335 (460)
T ss_pred             chhhcCCCCceEEEECcccccCCCCC--ceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHh
Confidence                  12678999999999998887  7999998873 4443332221111           111  1233344333  


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhCC
Q 016612          246 GVKTMALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      +.+.+....++..++++++.+.+++.+
T Consensus       336 G~eGy~~l~~~~~~~a~~la~~l~~~~  362 (460)
T COG0076         336 GREGYRKLLDRTLELARYLAEELEKLG  362 (460)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            334556666666677788888877764

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.63  E-value=1.8e-14  Score=136.69  Aligned_cols=320  Identities=15%  Similarity=0.116  Sum_probs=177.1

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccC-CCCchHHHHHHHHHhhc----CCC-ceEEe-CcHHHHHHHHHHh---
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLD----KAD-RALCF-TSGMAALAAVTHL---   89 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~----g~~-~~i~~-~~gt~al~~~~~~---   89 (386)
                      +..+|..+|++.++.......    ..+.... ..++...++.+.+.+.+    +.+ ...++ +||++|+.+.+.+   
T Consensus        50 ~~~lGh~~p~v~~ai~~ql~~----~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~  125 (425)
T PRK09264         50 ALNYGHNNPVLKQALIDYLQR----DGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARK  125 (425)
T ss_pred             hccCCCCCHHHHHHHHHHHHh----cccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHH
Confidence            345777777776543221111    0111111 12345666777777753    122 23444 6999998644332   


Q ss_pred             cCCCCEEEecCCCCCcHHHHHhhhc------ccCC---cEEEEeCC--------CCHHHHHhhhC------CCceEEEEe
Q 016612           90 LGTGEEIVAGDDLYGGTDRLLSRVT------PKTG---VVVKRVNT--------CDLDEVASAIG------PWTKLVWVE  146 (386)
Q Consensus        90 ~~~g~~Vlv~~~~~~~~~~~~~~~~------~~~g---~~~~~v~~--------~d~~~l~~~~~------~~~~~v~~~  146 (386)
                      .....+|+.-...|++.......+.      ..++   ..+..++.        .|++++++.+.      +++.+|+++
T Consensus       126 ~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~E  205 (425)
T PRK09264        126 VTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVE  205 (425)
T ss_pred             hcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEe
Confidence            3344677777777766532111111      1111   12344443        26677887774      357899999


Q ss_pred             CCCCCCcccc----cHHHHHHHHHHcCCEEEEeCCCCC-C---Ccc--CCCCCCccEEEeccccccccCCCceEEEEEEc
Q 016612          147 SPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS-P---VLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (386)
Q Consensus       147 ~~~nptG~~~----~l~~i~~la~~~~~~li~D~a~~~-~---~~~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~  216 (386)
                      ......|.+.    .+++|.++|++||+++|+||+++. |   ...  .......|++  +++|.++ +.|+++|+++++
T Consensus       206 pv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~--t~~K~l~-~~G~pigav~~~  282 (425)
T PRK09264        206 TVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIV--TLSKSIS-GYGLPMALVLIK  282 (425)
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEE--EeccccC-CCccceEEEEEc
Confidence            8888777754    399999999999999999999852 2   111  1223457876  4589984 446789999987


Q ss_pred             ChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccC
Q 016612          217 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  296 (386)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~  296 (386)
                      ++ +. .+...........++....+....+..+ ...+...++.+.+.+++.+.-.  . +..   .++.. +  .+.+
T Consensus       283 ~~-i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~-~~~~~l~~~~~~~g~~l~~~l~--~-l~~---~~~~~-~--~~vr  350 (425)
T PRK09264        283 PE-LD-VWKPGEHNGTFRGNNLAFVTATAALEEY-WSDDAFEKEVKAKGELVRERLE--E-IAA---KYPGL-G--AEVR  350 (425)
T ss_pred             hh-hh-ccCCCccCCCCCCCHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHH--H-HHH---hCCCc-e--ecce
Confidence            44 42 2211111112223344444433433211 1112344444444444432110  0 000   11110 0  1124


Q ss_pred             CCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHH
Q 016612          297 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVND  372 (386)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~  372 (386)
                      +.|.++++.+++......+.+.+...|+.+.....                         ....||+++.    .+++++
T Consensus       351 g~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~-------------------------~~~~lr~~p~l~~t~~ei~~  405 (425)
T PRK09264        351 GRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGP-------------------------EDEVVKLLPPLTIDEEELEE  405 (425)
T ss_pred             ecccEEEEEecChHHHHHHHHHHHHCCCEEeccCC-------------------------CCCEEEEeCCCCCCHHHHHH
Confidence            56788899997766677888888888886543221                         1244888865    588888


Q ss_pred             HHHHHHHHHhc
Q 016612          373 LISDLDKALRT  383 (386)
Q Consensus       373 ~i~~l~~~l~~  383 (386)
                      .++.|.+++++
T Consensus       406 ~~~~l~~~l~~  416 (425)
T PRK09264        406 GLDILEEAVAE  416 (425)
T ss_pred             HHHHHHHHHHH
Confidence            88888888765

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.61  E-value=1.7e-14  Score=136.08  Aligned_cols=284  Identities=12%  Similarity=0.085  Sum_probs=163.5

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---c-----CCCCEEEecCCCCCcHHHHHhhhcc-------c
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---L-----GTGEEIVAGDDLYGGTDRLLSRVTP-------K  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~-----~~g~~Vlv~~~~~~~~~~~~~~~~~-------~  116 (386)
                      ++...++.+.|.++.+.  +...+++||++|+.+.+.+   .     ....+|+.-..+|++.......+..       .
T Consensus        85 ~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~  164 (428)
T PRK07986         85 HPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSL  164 (428)
T ss_pred             CHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhc
Confidence            34566677777776643  4677889999998643331   1     2346788777777664211111100       0


Q ss_pred             CC---cEEEEeCC-----------CCHHHHHhhhC---CCceEEEEeCC-CCCCcccc-c---HHHHHHHHHHcCCEEEE
Q 016612          117 TG---VVVKRVNT-----------CDLDEVASAIG---PWTKLVWVESP-TNPRQQIC-D---IRKIAEMAHAHGALLLV  174 (386)
Q Consensus       117 ~g---~~~~~v~~-----------~d~~~l~~~~~---~~~~~v~~~~~-~nptG~~~-~---l~~i~~la~~~~~~li~  174 (386)
                      ++   ..+..++.           .|++++++.+.   +++.+|+++.. +.-.|.+. +   +++|.++|++||+++|+
T Consensus       165 ~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~  244 (428)
T PRK07986        165 YKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIA  244 (428)
T ss_pred             cCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence            00   01122221           25567777774   46789999885 66556543 2   89999999999999999


Q ss_pred             eCCCCC-CCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHh-----hhhcCCCCChhhHHH
Q 016612          175 DNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWI  242 (386)
Q Consensus       175 D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  242 (386)
                      ||++.. |...     ......+|+++  ++|.++|  | +.+|.++++ +++.+.+...     ......+.++...++
T Consensus       245 DEv~tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~g--G~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~aa  319 (428)
T PRK07986        245 DEIATGFGRTGKLFACEHAGIAPDILC--LGKALTG--GTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAV  319 (428)
T ss_pred             eccccCCccCCCeeeecccCCCCCEEE--echhhhC--CcccCcchhch-HHHHHHhhcCCCCccccCCCCCcCHHHHHH
Confidence            999742 2211     12233568885  7999864  4 346666665 5566555321     112223445666666


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc
Q 016612          243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  322 (386)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  322 (386)
                      +...++.+..  +...++.+.+.+++.+.-.       .+..++.+    .+.++.|.++.+.+..+.....+.+.+..+
T Consensus       320 a~a~L~~i~~--~~~~~~~~~~g~~l~~~l~-------~l~~~~~i----~~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~  386 (428)
T PRK07986        320 ANASLSLLES--GDWQQQVAAIEAQLREELA-------PLRDAPMV----ADVRVLGAIGVVETTRPVNMAALQRFFVEQ  386 (428)
T ss_pred             HHHHHHHHHh--CCHHHHHHHHHHHHHHHHH-------HHhcCCCE----EeEeccceEEEEEeCCcccHHHHHHHHHHC
Confidence            6665554322  1234444444444433110       01111111    223677889998886543456777788778


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhc
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~  383 (386)
                      |+.+.+.+                            +.+|+.+    +.++++++++.|.++|++
T Consensus       387 Gl~~~~~g----------------------------~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        387 GVWIRPFG----------------------------KLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             CcEEEecC----------------------------CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            87654311                            2377765    458888888999888865

>PRK15029 arginine decarboxylase; Provisional

Probab=99.61  E-value=2.4e-14  Score=141.23  Aligned_cols=156  Identities=16%  Similarity=0.188  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ...+.++.+++.||++...+.++|| .++. ++++++++||.|++++.+|-+..+    .+...|+..+++.+.      
T Consensus       206 ~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~----al~L~ga~Pvyl~P~~~~~Gi  281 (755)
T PRK15029        206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ----GLILTGAKPVYMVPSRNRYGI  281 (755)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHH----HHHHcCCeEEEecccccccCC
Confidence            6889999999999999877777776 6665 667799999999999999988874    344778888888642      


Q ss_pred             ----C-----HHHHHhhhC--CCce--------EEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCC-----CCc
Q 016612          128 ----D-----LDEVASAIG--PWTK--------LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----PVL  183 (386)
Q Consensus       128 ----d-----~~~l~~~~~--~~~~--------~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~-----~~~  183 (386)
                          +     ++++++++.  +.++        ++++++|++ .|.+.++++|+++|++++++|++||||+.     +.+
T Consensus       282 ~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~  360 (755)
T PRK15029        282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY  360 (755)
T ss_pred             ccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccCccc
Confidence                3     788888874  3334        899999988 69999999999999999999999999863     212


Q ss_pred             c--CCC-----C-CCcc-EEEeccccccccCCCceEEEEEEcCh
Q 016612          184 S--RPL-----E-LGAD-IVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       184 ~--~~~-----~-~~~d-i~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      +  ...     . .|+| +++.|.||.+.+...  ++++..+..
T Consensus       361 p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQ--aS~LHv~~~  402 (755)
T PRK15029        361 ADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQ--ASYIHVREG  402 (755)
T ss_pred             cccccccccccccCCCceEEEEchhhcccchhh--hhhheeCCC
Confidence            2  122     2 5788 999999999987664  788887544

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.60  E-value=4.7e-14  Score=128.11  Aligned_cols=255  Identities=17%  Similarity=0.187  Sum_probs=155.2

Q ss_pred             HHHHHHHHHhhcCC-CceEEeCcHHHHHH-HHH--HhcCCCCEEEecCCCCCcHHHHH-hhhc---------ccCC----
Q 016612           57 RDALESLLAKLDKA-DRALCFTSGMAALA-AVT--HLLGTGEEIVAGDDLYGGTDRLL-SRVT---------PKTG----  118 (386)
Q Consensus        57 ~~~l~~~l~~~~g~-~~~i~~~~gt~al~-~~~--~~~~~g~~Vlv~~~~~~~~~~~~-~~~~---------~~~g----  118 (386)
                      --++.+.+.+.++. +..-+++|||+|.. ++.  +-....|+|+.-+.+|++....+ .++-         ...|    
T Consensus        95 Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~  174 (432)
T COG0001          95 EVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPAD  174 (432)
T ss_pred             HHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChh
Confidence            33455666676665 77889999998854 442  23455688888888887764432 1110         1111    


Q ss_pred             --cEEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-----CCcc
Q 016612          119 --VVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-----PVLS  184 (386)
Q Consensus       119 --~~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-----~~~~  184 (386)
                        ..+..++.+|++.+++++.   +++.+|+++.....-|.+.|    ++.|.++|+++|+++|.||+...     +-.+
T Consensus       175 ~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq  254 (432)
T COG0001         175 VAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQ  254 (432)
T ss_pred             hhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccc
Confidence              1345556679999998886   58899999976555688876    89999999999999999999652     2222


Q ss_pred             CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhc---CCCCChhhHHHHHhcCCcHHH---HHHHHH
Q 016612          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE---GSGLAPFDCWICLRGVKTMAL---RVEKQQ  258 (386)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~  258 (386)
                      ......+|+.+  +.|.++|  |+-+|.+.++ +++++.+.......   ...-++.+..+....++.+..   -.+++.
T Consensus       255 ~~~gi~PDltt--lGKiIGG--GlP~ga~gGr-~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~  329 (432)
T COG0001         255 GYYGVEPDLTT--LGKIIGG--GLPIGAFGGR-AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLD  329 (432)
T ss_pred             cccCcCcchhh--hhhhhcC--CcceeeeccH-HHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            33345678875  6999975  6778988886 66877665444322   223344444444444443332   245555


Q ss_pred             HHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-------------CHHhHHHHHhhcCcceec
Q 016612          259 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTKYFSIT  325 (386)
Q Consensus       259 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~gi~  325 (386)
                      +..++|.+-|++.-.     ..+++..         ....+.++.+.+.             +.+...+++..+...|+.
T Consensus       330 ~~~~~L~~gl~~~~~-----~~g~~~~---------v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~  395 (432)
T COG0001         330 ALGERLAEGLRAAAE-----RHGIPLT---------VNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVY  395 (432)
T ss_pred             HHHHHHHHHHHHHHH-----HhCCCeE---------EeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcc
Confidence            566666655554210     0011100         0224556666542             223345566677777887


Q ss_pred             cCCCC
Q 016612          326 VSFGS  330 (386)
Q Consensus       326 ~~~G~  330 (386)
                      +.++.
T Consensus       396 l~ps~  400 (432)
T COG0001         396 LAPSQ  400 (432)
T ss_pred             cCCcc
Confidence            66554

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.60  E-value=5.1e-14  Score=132.91  Aligned_cols=283  Identities=13%  Similarity=0.127  Sum_probs=162.4

Q ss_pred             CchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHHh---c--C---C-CCEEEecCCCCCcHH-HHHhhhccc-----
Q 016612           54 NPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHL---L--G---T-GEEIVAGDDLYGGTD-RLLSRVTPK-----  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~~---~--~---~-g~~Vlv~~~~~~~~~-~~~~~~~~~-----  116 (386)
                      ++...++.+.+.+..+  .+...+++||++|+.+.+.+   .  .   + +.+|+.-...|++.. ..+ .+...     
T Consensus        82 ~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~al-s~~~~~~~~~  160 (422)
T PRK05630         82 HEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAM-SVCDPEGGMH  160 (422)
T ss_pred             CHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHh-ccCCCccccc
Confidence            3456677777777764  34788889999998633322   1  1   2 356787777776642 221 11110     


Q ss_pred             --CC---cEEEEeCCC-----C-------HHHHHhhhCCCceEEEEeCC-CCCCccccc----HHHHHHHHHHcCCEEEE
Q 016612          117 --TG---VVVKRVNTC-----D-------LDEVASAIGPWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLV  174 (386)
Q Consensus       117 --~g---~~~~~v~~~-----d-------~~~l~~~~~~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~  174 (386)
                        ++   .....++..     +       .+.+++.+.+++.+|+++.. ....|.+.+    +++|.++|++||+++|+
T Consensus       161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~  240 (422)
T PRK05630        161 SLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIA  240 (422)
T ss_pred             ccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence              00   011222211     1       23455556678999999985 776677653    89999999999999999


Q ss_pred             eCCCCC-CCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHh------hhhcCCCCChhhHH
Q 016612          175 DNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL------QNAEGSGLAPFDCW  241 (386)
Q Consensus       175 D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  241 (386)
                      ||++.. |-..     ......+|++  +++|.++|  | ..+|+++++ +++.+.+...      ........++....
T Consensus       241 DEv~tG~GrtG~~~a~~~~gv~PDi~--t~gK~l~g--G~~p~~av~~~-~~i~~~~~~~~~~~~~~h~~T~~g~Pla~a  315 (422)
T PRK05630        241 DEIATGFGRTGELFATLAAGVTPDIM--CVGKALTG--GFMSFAATLCT-DKVAQLISTPNGGGALMHGPTFMANPLACA  315 (422)
T ss_pred             ecceeCCCcCchhhHHHhcCCCCCee--eeechhhc--Cccccceeecc-HHHHHHHhccCCCCccccCCCCcCCHHHHH
Confidence            999742 2111     1123457888  56999954  2 236777776 4565544311      11222345666666


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc
Q 016612          242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  321 (386)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  321 (386)
                      +....++.+..  +...++...+.+++.+.-.       .+...+.+    .+.++.|.++.+.+.++.....+.+.+..
T Consensus       316 aa~aaL~~l~~--~~~~~~~~~~g~~l~~~L~-------~l~~~~~v----~~vRg~Gl~~~ie~~~~~~~~~~~~~~~~  382 (422)
T PRK05630        316 VAHASLEIIET--GMWRKQVKRIEAELIAGLS-------PLAHLPGV----ADVRVLGAIGVVEMEQPVDMEEATQAAVD  382 (422)
T ss_pred             HHHHHHHHHHh--CcHHHHHHHHHHHHHHHHH-------HhhcCCCe----eeeeccccEEEEEECCcccHHHHHHHHHH
Confidence            66555554432  1233344444444433110       01111111    12367899999998554335567777777


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      +|+.+...+                            +.+|+.+.    .++++++++.|+++|++
T Consensus       383 ~Gl~~~~~g----------------------------~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        383 HGVWLRPFG----------------------------RLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             CCeEEEecC----------------------------CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence            787653211                            23777764    48888888888888764

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.60  E-value=7.9e-14  Score=132.63  Aligned_cols=312  Identities=13%  Similarity=0.140  Sum_probs=175.1

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEeCcHHHHHHHHHHh---cCCC
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAAVTHL---LGTG   93 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~~~~~---~~~g   93 (386)
                      +..+|..+|++.++......   ...........++...++.+.|.+++..   +...+++||++|+.+.+.+   ....
T Consensus        53 ~~~lGH~~p~v~~Ai~~ql~---~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr  129 (445)
T PRK08593         53 SQNVGHAPPRVVEAIKAQAD---KFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGR  129 (445)
T ss_pred             hhcCCCCCHHHHHHHHHHHH---hccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCC
Confidence            44577777776664322111   1111111112346677788888888743   3566779999998643332   2334


Q ss_pred             CEEEecCCCCCcHH-HHHhhhcc-------cCC---cEEEEeCCCC-----------------HHHHHhhh-----CCCc
Q 016612           94 EEIVAGDDLYGGTD-RLLSRVTP-------KTG---VVVKRVNTCD-----------------LDEVASAI-----GPWT  140 (386)
Q Consensus        94 ~~Vlv~~~~~~~~~-~~~~~~~~-------~~g---~~~~~v~~~d-----------------~~~l~~~~-----~~~~  140 (386)
                      .+|+.-+..|++.. ..+ .+..       .++   ..+..++..+                 ++++++.+     .+++
T Consensus       130 ~~ii~~~~~YHG~t~~al-s~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  208 (445)
T PRK08593        130 PYIISFTNAYHGSTYGSL-SMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEV  208 (445)
T ss_pred             CeEEEECCCcCCCcHHHH-hhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCce
Confidence            56777676666642 222 1111       011   1122233211                 13444433     2578


Q ss_pred             eEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCCceE
Q 016612          141 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMA  210 (386)
Q Consensus       141 ~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~  210 (386)
                      .+|+++.+....|.+.+    +++|.++|++||+++|+||++. .|...     .......|++  +++|.+++  |+.+
T Consensus       209 AavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~gK~l~~--G~p~  284 (445)
T PRK08593        209 ACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SFGKSLAG--GMPM  284 (445)
T ss_pred             EEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEe--eecccccC--Cccc
Confidence            99999999888888865    9999999999999999999984 32221     1122346776  57999964  5678


Q ss_pred             EEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHH----HHHHhhCCCcceEecCCCCCCC
Q 016612          211 GVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI----AEFLASHPRVKKVNYAGLPEHP  286 (386)
Q Consensus       211 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~l~~~~  286 (386)
                      |+++++ +++.+.+...........++...++.+..++.+..  +...++.+.+    .+.+++...    .++.+    
T Consensus       285 gav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l~~----~~~~v----  353 (445)
T PRK08593        285 SAIVGR-KEIMESLEAPAHLFTTGANPVSCAAALATIDMIED--ESLLQRSAEKGEYARKRFDQWVS----KYNFV----  353 (445)
T ss_pred             EEEEEc-HHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHh----cCCcE----
Confidence            999887 55665553222223345566666655555543322  1233344333    333332210    00111    


Q ss_pred             chhhhhhccCCCCceEEEEeC--------CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCC
Q 016612          287 GHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  358 (386)
Q Consensus       287 ~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  358 (386)
                            .+.++.|.++.+.+.        +......+.+.+..+|+.+...                           ..
T Consensus       354 ------~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---------------------------~~  400 (445)
T PRK08593        354 ------GDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV---------------------------AG  400 (445)
T ss_pred             ------EEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc---------------------------CC
Confidence                  122567777777662        2234567777777778754321                           12


Q ss_pred             CeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          359 DLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       359 ~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                      +.+|+++..    ++++++++.+.+++++
T Consensus       401 ~~lr~~p~l~~t~~~id~~~~~l~~~l~~  429 (445)
T PRK08593        401 NVLRFQPPLVITYEQLDTALNTIEQAFTA  429 (445)
T ss_pred             CEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            348888754    7777777788777765

>PRK06541 hypothetical protein; Provisional

Probab=99.60  E-value=1.2e-13  Score=131.82  Aligned_cols=287  Identities=17%  Similarity=0.160  Sum_probs=159.9

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---c---C---CCCEEEecCCCCCcHHHHHhhhccc------
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---L---G---TGEEIVAGDDLYGGTDRLLSRVTPK------  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~---~---~g~~Vlv~~~~~~~~~~~~~~~~~~------  116 (386)
                      ++...++.+.+.++...  +...+++||++|+.+.+.+   .   .   ...+|+.-...|++...........      
T Consensus        94 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~  173 (460)
T PRK06541         94 HPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAP  173 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccc
Confidence            34556667777776543  4678889999998633321   1   1   2357777666666553211111100      


Q ss_pred             CC---cEEEEeCCC----------C--------HHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHH
Q 016612          117 TG---VVVKRVNTC----------D--------LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHA  167 (386)
Q Consensus       117 ~g---~~~~~v~~~----------d--------~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  167 (386)
                      ++   ..+..++..          +        ++.+++.+.    .++.+|+++..+++.|.+.+    +++|.++|++
T Consensus       174 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~  253 (460)
T PRK06541        174 FEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDR  253 (460)
T ss_pred             cCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHH
Confidence            00   112222211          1        256776664    46778888888999999987    9999999999


Q ss_pred             cCCEEEEeCCC-CCCCccCC-----CCCCccEEEeccccccccCCCc-eEEEEEEcChhHHHHHHHhh----hhcCCCCC
Q 016612          168 HGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFLQ----NAEGSGLA  236 (386)
Q Consensus       168 ~~~~li~D~a~-~~~~~~~~-----~~~~~di~~~S~sK~~~g~~g~-~~G~i~~~~~~~~~~~~~~~----~~~~~~~~  236 (386)
                      +|+++|+||++ +.|-....     .....|+++  ++|.+++  |. .+|++++++ ++.+.+....    .......+
T Consensus       254 ~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~~--G~~pigav~~~~-~i~~~~~~~~~~~~~~~T~~gn  328 (460)
T PRK06541        254 YDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGITS--GYSPLGAMIASD-RLFEPFLDGPTMFLHGYTFGGH  328 (460)
T ss_pred             cCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ecccccC--CccceeEEEEcH-HHHHHhhcCCCccccCCCCCCC
Confidence            99999999998 44332211     223578875  7999963  43 578888764 4544443211    11223445


Q ss_pred             hhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-H------
Q 016612          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-L------  309 (386)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~------  309 (386)
                      +...++.+..++.+..  +...++.+.+.+++.+.-.       .+..++.    ....++.|.++.+.+.. .      
T Consensus       329 p~~~aaala~l~~l~~--~~~~~~~~~~g~~l~~~L~-------~l~~~~~----v~~vrg~Gl~~~ie~~~~~~~~~~~  395 (460)
T PRK06541        329 PVSAAVALANLDIFER--EGLLDHVRDNEPAFRATLE-------KLLDLPI----VGDVRGDGYFYGIELVKDKATKETF  395 (460)
T ss_pred             HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH-------HhhcCCC----eEEEEecceEEEEEEecCcccccCC
Confidence            5566555555443321  1233444444444332110       0111110    01225678888888721 1      


Q ss_pred             --H-----hHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHH
Q 016612          310 --A-----LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLD  378 (386)
Q Consensus       310 --~-----~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~  378 (386)
                        .     ....+.+.+..+|+.+.+...                         +...+|+++.    .++++++++.+.
T Consensus       396 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------------------------g~~~lrl~Ppl~~t~~~id~~~~~l~  450 (460)
T PRK06541        396 TDDESERLLRGFLSPALFEAGLYCRADDR-------------------------GDPVVQLAPPLISGQEEFDEIEQILR  450 (460)
T ss_pred             cchhhhhhHHHHHHHHHHhCCeEEEecCC-------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence              0     112455666677776543110                         1245888875    377888888888


Q ss_pred             HHHhc
Q 016612          379 KALRT  383 (386)
Q Consensus       379 ~~l~~  383 (386)
                      +++++
T Consensus       451 ~~l~~  455 (460)
T PRK06541        451 SVLTE  455 (460)
T ss_pred             HHHHH
Confidence            87764

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.60  E-value=4.6e-14  Score=133.37  Aligned_cols=282  Identities=15%  Similarity=0.111  Sum_probs=162.5

Q ss_pred             chHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHHh---c-----CC-CCEEEecCCCCCcH-HHHHhhhcc-------
Q 016612           55 PTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHL---L-----GT-GEEIVAGDDLYGGT-DRLLSRVTP-------  115 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~~---~-----~~-g~~Vlv~~~~~~~~-~~~~~~~~~-------  115 (386)
                      +...++.+.+.+...  .+...+++||++|+.+.+.+   .     ++ ..+|+.-...|++. ...+ .+..       
T Consensus        87 ~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~  165 (429)
T PRK06173         87 EPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAM-SVCDPVTGMHG  165 (429)
T ss_pred             HHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhh-ccCCCchhhhh
Confidence            445556666666653  34677889999998643332   1     12 35677777777664 2211 1100       


Q ss_pred             cCC---cEEEEeCCC-----------CHHHHHhhhC---CCceEEEEeCC-CCCCccccc----HHHHHHHHHHcCCEEE
Q 016612          116 KTG---VVVKRVNTC-----------DLDEVASAIG---PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLL  173 (386)
Q Consensus       116 ~~g---~~~~~v~~~-----------d~~~l~~~~~---~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li  173 (386)
                      .++   ..+..++..           +++.+++.+.   +++.+|+++.. +...|.+.+    +++|.++|++||+++|
T Consensus       166 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI  245 (429)
T PRK06173        166 LFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLI  245 (429)
T ss_pred             cccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEE
Confidence            000   011222211           3555666664   57899999985 776777653    8999999999999999


Q ss_pred             EeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCc-eEEEEEEcChhHHHHHHH-----hhhhcCCCCChhhHH
Q 016612          174 VDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDV-MAGVLAVKGERLAKELYF-----LQNAEGSGLAPFDCW  241 (386)
Q Consensus       174 ~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~-~~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  241 (386)
                      +||++.. |...     .......|+++  ++|.++|  |. -++.++++ +++.+.+..     +........++...+
T Consensus       246 ~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g--G~~p~~a~~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~a  320 (429)
T PRK06173        246 FDEIATGFGRTGKLFALEHAGVVPDIMC--IGKALTG--GYLTLSATITT-EAIAQTICSGEAKCFMHGPTFMANPLACA  320 (429)
T ss_pred             ecchhcCCCcCCcchHHHhcCCCCCEEE--eehhhhC--CccccceEEec-HHHHHHHhcCCCCccccCCCCCcCHHHHH
Confidence            9999842 1111     11233578886  7999854  42 35666665 456554431     112222345666676


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc
Q 016612          242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  321 (386)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  321 (386)
                      +++..++.+..  +...++.+.+.+++.+.-.  .     +...+..    ...++.|.++.+.+.+......+.+.+..
T Consensus       321 aa~a~l~~i~~--~~~~~~~~~~g~~l~~~L~--~-----~~~~~~v----~~vRg~Gl~~~iel~~~~~~~~i~~~l~e  387 (429)
T PRK06173        321 IAAESIRLLLE--SPWQQNIQRIEAQLKQELA--P-----AAEFDSV----AEVRVLGAIGVVEMKEPVNMATLQPRFVE  387 (429)
T ss_pred             HHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH--H-----hhcCCCe----eeeeccceEEEEEeCCcccHHHHHHHHHH
Confidence            66666654432  1233444444444433100  0     0001110    12256788999998665445677788877


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhc
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~  383 (386)
                      +|+.+...+                            +.||+.+    +.++++++++.|.++|++
T Consensus       388 ~Gi~v~~~g----------------------------~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        388 HGIWVRPFG----------------------------KLVYIMPPFIISPDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             CCeEEEecC----------------------------CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            888654321                            2377765    458899999999998875

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.59  E-value=1.1e-13  Score=132.84  Aligned_cols=323  Identities=17%  Similarity=0.164  Sum_probs=182.6

Q ss_pred             eeeccCC--CCCCCCCcccceeeeeeeecCCCCCCCCccccC-C-CCchHHHHHHHHHhhcC-CC--ceEEeCcHHHHHH
Q 016612           12 LLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTR-S-GNPTRDALESLLAKLDK-AD--RALCFTSGMAALA   84 (386)
Q Consensus        12 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~-g~~~~~~l~~~l~~~~g-~~--~~i~~~~gt~al~   84 (386)
                      +.+++..  ++.++|..+|.+.++......    ...+...- . .++...++++.|.+.+. .+  ..++++||++|..
T Consensus        90 ~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~----~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e  165 (504)
T PLN02760         90 KYLDALAGLWCTALGGSEPRLVAAATEQLN----KLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEAND  165 (504)
T ss_pred             EEEEcCcCHHhcccCCCCHHHHHHHHHHHh----hccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHH
Confidence            4455442  367788888777664322211    11111111 1 34567788888888753 32  5777899999986


Q ss_pred             HHHHhc-------C-C-CCEEEecCCCCCcHH-HHHhhhcc------cCCc---EEEEeCCC----------C-------
Q 016612           85 AVTHLL-------G-T-GEEIVAGDDLYGGTD-RLLSRVTP------KTGV---VVKRVNTC----------D-------  128 (386)
Q Consensus        85 ~~~~~~-------~-~-g~~Vlv~~~~~~~~~-~~~~~~~~------~~g~---~~~~v~~~----------d-------  128 (386)
                      +.+.+.       . + .++|+..+..|++.. ..+ .+..      .++.   .+..++.+          +       
T Consensus       166 ~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~-slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  244 (504)
T PLN02760        166 TQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTR  244 (504)
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhh-hccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHH
Confidence            443322       1 2 256777676665542 221 1110      1111   02222211          1       


Q ss_pred             -HHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCC-CCCCcc-----CCCCCCccE
Q 016612          129 -LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLS-----RPLELGADI  193 (386)
Q Consensus       129 -~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~-~~~~~~-----~~~~~~~di  193 (386)
                       .+++++.+.    +++.+|+++......|.+.|    +++|.++|++||+++|+||++ +.|-..     ......+|+
T Consensus       245 ~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDi  324 (504)
T PLN02760        245 LADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDL  324 (504)
T ss_pred             HHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcE
Confidence             134665552    46889999999888888877    999999999999999999998 344332     112335787


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHh-------hhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 016612          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  266 (386)
Q Consensus       194 ~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  266 (386)
                      ++  ++|.+++. .+.+|.++++ +++.+.+...       ......+.++...++++..++.+..  +...++.+.+.+
T Consensus       325 vt--lgK~lggG-~~PigAv~~~-~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~--~~l~~~~~~~g~  398 (504)
T PLN02760        325 VS--LAKALSSA-YMPIGAVLVS-PEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKE--RNIPEHVNKIAP  398 (504)
T ss_pred             EE--ecccccCC-ccccceEeec-HHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence            65  69999651 1235667776 5566654321       1222234566777776666654432  234445555554


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-H----------HhHHHHHhhcCcceeccCCCCccccc
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-L----------ALSKHVVETTKYFSITVSFGSVKSLI  335 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~----------~~~~~l~~~l~~~gi~~~~G~~~~~~  335 (386)
                      ++.+.-.  .     +...+-    ..+.++.|.++.+.+.+ .          .....+.+.+..+|+.+...+     
T Consensus       399 ~l~~~L~--~-----l~~~~~----v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-----  462 (504)
T PLN02760        399 RFQDGIK--A-----FSGSPI----IGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG-----  462 (504)
T ss_pred             HHHHHHH--H-----HhcCCC----eeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC-----
Confidence            4443210  0     111110    11236778888887732 1          125567777777787654311     


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhcC
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~~  384 (386)
                                             ..+|+++    +.++++++++.+.++|++.
T Consensus       463 -----------------------~~lrl~Ppl~it~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        463 -----------------------DNIMMSPPLIITPEEVDELISIYGKALKAT  492 (504)
T ss_pred             -----------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                   2378885    4588888888888888653

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.59  E-value=6.8e-14  Score=123.93  Aligned_cols=291  Identities=17%  Similarity=0.173  Sum_probs=146.4

Q ss_pred             hHHHHHHHHHhhcCCC-ceEEeCcH-H-HHHH-HHH-Hhc----C--------CCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           56 TRDALESLLAKLDKAD-RALCFTSG-M-AALA-AVT-HLL----G--------TGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~g-t-~al~-~~~-~~~----~--------~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...++++.+++++|.+ +.+++.++ + .-++ ++. +++    .        +.-++|+|.|+|.-++    .+++.+|
T Consensus        70 Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHF----ai~E~~G  145 (425)
T PF12897_consen   70 GIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHF----AITEHFG  145 (425)
T ss_dssp             --HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHH----HHHHHCT
T ss_pred             ChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHH----HHHHhhC
Confidence            4668999999999988 44444444 4 3344 332 221    1        1236799999995444    7889999


Q ss_pred             cEEEEeCCC----CHHHHHhhh--CCCceEEEEe-CCCCCCcccccHHHHHHHH----HHcCCEEEEeCCCCCCCcc-C-
Q 016612          119 VVVKRVNTC----DLDEVASAI--GPWTKLVWVE-SPTNPRQQICDIRKIAEMA----HAHGALLLVDNSIMSPVLS-R-  185 (386)
Q Consensus       119 ~~~~~v~~~----d~~~l~~~~--~~~~~~v~~~-~~~nptG~~~~l~~i~~la----~~~~~~li~D~a~~~~~~~-~-  185 (386)
                      ++.+.||+.    |.|.+++++  ++.+|.|+.. --+||||.++.-+-+.++|    ...++.|+.|++|+.-++. + 
T Consensus       146 iemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~  225 (425)
T PF12897_consen  146 IEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEE  225 (425)
T ss_dssp             -EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSS
T ss_pred             cEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccc
Confidence            999999985    899999987  3677877764 6799999999755555555    3469999999999876652 1 


Q ss_pred             CCC--------------CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH
Q 016612          186 PLE--------------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA  251 (386)
Q Consensus       186 ~~~--------------~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (386)
                      +..              .+..+++.|+||.-...+|  ++++.++.+++......+ .....+..-.++..-.+.+....
T Consensus       226 ~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaG--va~~aaS~~Nl~~~~~~~-~~~tIgpdKvNQLRHvrff~d~~  302 (425)
T PF12897_consen  226 PRDALLNILDACAKAGNPDRVYVFASTSKITFPGAG--VAFFAASEANLAWIKKHL-SVQTIGPDKVNQLRHVRFFKDAE  302 (425)
T ss_dssp             S------HHHHHHHTT-TTSEEEEEESTTTS-TTSS---EEEEE-HHHHHHHHHHH-HHH-S---HHHHHHHHHHHHSHH
T ss_pred             cchhhhHHHHHHHHcCCCCeEEEEecccccccCCcc--eeeeecCHHHHHHHHHHh-cCceeCccHHHHHHHHHHhcChh
Confidence            111              1346899999997655455  799998876665433332 22333444444433333333322


Q ss_pred             -HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhh-hhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCC
Q 016612          252 -LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL-HYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFG  329 (386)
Q Consensus       252 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G  329 (386)
                       --.....+++..++-.++.-   ...+...|..  +..+ -|..|+| |+|+++...+. .++++.+.+++.|+...+.
T Consensus       303 gGv~aHM~kHa~il~PKF~~V---~~~L~~~L~~--~~~ia~Wt~P~G-GYFIsld~~~G-~AkrvV~lakeAGV~LT~A  375 (425)
T PF12897_consen  303 GGVRAHMRKHAAILRPKFEAV---LEILEEELGD--GLGIASWTKPKG-GYFISLDVLDG-TAKRVVELAKEAGVALTPA  375 (425)
T ss_dssp             THHHHHHHHHHHHHHHHHHHH---HHHHHHHHGT--GGTSEEE---SB-SS-EEEEESTT--HHHHHHHHHHTTEE---T
T ss_pred             hHHHHHHHHHHHHHhhhHHHH---HHHHHHhcCC--CCCeeEecCCCC-ceEEEEecCCC-hHHHHHHHHHHhCceeCCC
Confidence             11122222222222111100   0001111110  0011 1233343 88899998665 4889999999999986663


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  377 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  377 (386)
                      ++    ++|+....             .+..|||+.+....+++-.++
T Consensus       376 GA----tfPyg~DP-------------~D~nIRiAPS~P~leel~~Am  406 (425)
T PF12897_consen  376 GA----TFPYGKDP-------------RDSNIRIAPSYPSLEELETAM  406 (425)
T ss_dssp             TT----TSGGG--T-------------TS-EEEE--SSS-HHHHHHHH
T ss_pred             CC----CCCCCCCC-------------CCCcEEecCCCCCHHHHHHHH
Confidence            32    24543221             356699999875555544433

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.59  E-value=1.9e-15  Score=134.62  Aligned_cols=215  Identities=25%  Similarity=0.271  Sum_probs=146.1

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      +++..+++++.+++++|.+..+++.+||.+.. ++..+++|++.|++.++.|...... .......|.+++.++..    
T Consensus        27 ~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~-ga~~~~~G~~~~~l~~~~~G~  105 (290)
T PF01212_consen   27 EDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDET-GAIEELSGAKLIPLPSDDDGK  105 (290)
T ss_dssp             SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSST-THHHHHTTCEEEEEBECTGTB
T ss_pred             CChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeecc-chhhHhcCcEEEECCCcccCC
Confidence            34789999999999999999999999998865 5666779999999998876322111 12234588888888753    


Q ss_pred             -CHHHHHhhhC------CCceEEEEeCCCCCC-cccc---cHHHHHHHHHHcCCEEEEeCCCCC------CCccCCCCCC
Q 016612          128 -DLDEVASAIG------PWTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMS------PVLSRPLELG  190 (386)
Q Consensus       128 -d~~~l~~~~~------~~~~~v~~~~~~npt-G~~~---~l~~i~~la~~~~~~li~D~a~~~------~~~~~~~~~~  190 (386)
                       ++++|++.+.      .++++|++++++|.. |.++   .+++|.++|++||+.+++|.+--.      +........+
T Consensus       106 l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~  185 (290)
T PF01212_consen  106 LTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAG  185 (290)
T ss_dssp             B-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhh
Confidence             7899998875      368999999999964 5565   478899999999999999999421      1111222358


Q ss_pred             ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCC--hhhHH------HHHhcCCcHHHHHHHHHHHHH
Q 016612          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA--PFDCW------ICLRGVKTMALRVEKQQDNAQ  262 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~  262 (386)
                      +|++.+|++|.++.+.   +++++++++.+.+.....+.. +..+.  .....      ..+..++....+..+..++++
T Consensus       186 ~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~~-gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~  261 (290)
T PF01212_consen  186 ADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRKRL-GGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAK  261 (290)
T ss_dssp             SSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHHHH-THHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHH
T ss_pred             CCEEEEEEEccccccc---ceEEEechHHHHHHHHHHHHh-ccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999986654   688888755444433332222 21111  11122      334445544566666777788


Q ss_pred             HHHHHHhhCC
Q 016612          263 KIAEFLASHP  272 (386)
Q Consensus       263 ~l~~~l~~~~  272 (386)
                      ++.+.++..+
T Consensus       262 ~La~~l~~~~  271 (290)
T PF01212_consen  262 RLAAGLEALG  271 (290)
T ss_dssp             CHHHCHHEEC
T ss_pred             HHHHHHHHCC
Confidence            8888877654

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.57  E-value=1.4e-13  Score=131.10  Aligned_cols=317  Identities=16%  Similarity=0.112  Sum_probs=175.0

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccC-CCCchHHHHHHHHHhhcCC----CceEEe-CcHHHHHHHHHHh---c
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKA----DRALCF-TSGMAALAAVTHL---L   90 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~g~----~~~i~~-~~gt~al~~~~~~---~   90 (386)
                      ...+|..+|.+.++......    ...+.+.. ..++...++.+.|.+++..    ...+++ +||++|+.+.+.+   .
T Consensus        50 ~~~lGh~~p~i~~ai~~q~~----~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~  125 (442)
T TIGR00709        50 TLALGHNHPNMKQKILDYLQ----SGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTY  125 (442)
T ss_pred             hhcCCCCCHHHHHHHHHHHH----hccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHh
Confidence            34467777776654322111    11111111 2345677788888887743    233444 7999998644332   3


Q ss_pred             CCCCEEEecCCCCCcHHHHHhhhccc----CC-----cEEEEeCCCC-------------H----HHHHhhhC------C
Q 016612           91 GTGEEIVAGDDLYGGTDRLLSRVTPK----TG-----VVVKRVNTCD-------------L----DEVASAIG------P  138 (386)
Q Consensus        91 ~~g~~Vlv~~~~~~~~~~~~~~~~~~----~g-----~~~~~v~~~d-------------~----~~l~~~~~------~  138 (386)
                      ....+|+.....|++.......+...    .+     ..+..++..+             .    +.+++.+.      +
T Consensus       126 tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (442)
T TIGR00709       126 TGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVD  205 (442)
T ss_pred             cCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCC
Confidence            34467887777776654332222110    00     1122222211             1    11333332      4


Q ss_pred             CceEEEEeCCCCCCcccc-c---HHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCc
Q 016612          139 WTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDV  208 (386)
Q Consensus       139 ~~~~v~~~~~~nptG~~~-~---l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~  208 (386)
                      ++.+|+++...+..|.+. |   +++|.++|++||+++|.||++.. +....     ......|+++  ++|.+++  |+
T Consensus       206 ~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~--G~  281 (442)
T TIGR00709       206 KPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG--GL  281 (442)
T ss_pred             ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC--Cc
Confidence            688999998877777775 3   89999999999999999999762 22111     1234578887  6999965  57


Q ss_pred             eEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCch
Q 016612          209 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  288 (386)
Q Consensus       209 ~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  288 (386)
                      ++|+++++++ + +.+.........+.++..++++...++.+..  +...++++.+.+++.+.-.  . +   .+.++. 
T Consensus       282 Pigav~~~~~-~-~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~L~--~-l---~~~~~~-  350 (442)
T TIGR00709       282 PLAVLLIAPE-F-DAWQPAGHTGTFRGNQLAMVTGTEALNYWKD--DNLAQNAQERGERITSFLD--D-M---IKEHPC-  350 (442)
T ss_pred             ccEEEEEchH-H-hccCCCcCCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH--H-H---HHhCCC-
Confidence            8999998754 4 2221111122234566666666665543321  2334444444444432110  0 0   001110 


Q ss_pred             hhhhhccCCCCceEEEEeCCH--------------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhc
Q 016612          289 ELHYSQAKGAGSVLSFLTGSL--------------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  354 (386)
Q Consensus       289 ~i~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~  354 (386)
                         ..+.++.|.++.+.+...              .....+...+..+|+.+.....                       
T Consensus       351 ---v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~-----------------------  404 (442)
T TIGR00709       351 ---IGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGR-----------------------  404 (442)
T ss_pred             ---eeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCC-----------------------
Confidence               012367888888887321              2355677777777776543211                       


Q ss_pred             CCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          355 GLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       355 ~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                        ..+.+|+.+.    .++++++++.+.++|++
T Consensus       405 --~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  435 (442)
T TIGR00709       405 --EGEVFRLLCPITIDQEECEEGISRFKQAVEE  435 (442)
T ss_pred             --CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              1345888775    48888888888888765

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.57  E-value=2.1e-13  Score=133.29  Aligned_cols=156  Identities=20%  Similarity=0.218  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ...+.++.+++.||++...++++|| .++. ++++++++||.||+.+.+|-+..+   ..+-..|+..+++.+.      
T Consensus       175 ~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~h---gaLiLsGa~PVYl~P~~n~~Gi  251 (720)
T PRK13578        175 AAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHH---GALIQAGATPVYLETARNPFGF  251 (720)
T ss_pred             HHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHH---HHHHHcCCeEEEeeccccccCC
Confidence            5889999999999999877777776 6665 677899999999999999988764   2234678888887642      


Q ss_pred             ----C-----HHHHHhhhCCC----------ceEEEEeCCCCCCcccccHHHHHHH-HHHcCCEEEEeCCCCCCC-----
Q 016612          128 ----D-----LDEVASAIGPW----------TKLVWVESPTNPRQQICDIRKIAEM-AHAHGALLLVDNSIMSPV-----  182 (386)
Q Consensus       128 ----d-----~~~l~~~~~~~----------~~~v~~~~~~nptG~~~~l~~i~~l-a~~~~~~li~D~a~~~~~-----  182 (386)
                          +     .+.+++++...          .+++++++|++ .|.+.++++|++. ++.++ +|++||||+.-.     
T Consensus       252 ~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~  329 (720)
T PRK13578        252 IGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPM  329 (720)
T ss_pred             cCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcc
Confidence                3     45578777532          58999999988 6999999999998 68888 999999986321     


Q ss_pred             ---cc-CCCCCCcc----EEEeccccccccCCCceEEEEEEcCh
Q 016612          183 ---LS-RPLELGAD----IVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       183 ---~~-~~~~~~~d----i~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                         ++ .....|+|    +++.|.||.+.+...  ++++..++.
T Consensus       330 ~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQ--aS~LHvk~~  371 (720)
T PRK13578        330 MADCSPLLLELNENDPGIFVTQSVHKQQAGFSQ--TSQIHKKDN  371 (720)
T ss_pred             cccCChhhhhcCCCCCCeEEEEChhhcchhhhh--HhhhhcCCc
Confidence               11 11345888    999999999987664  778877653

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.56  E-value=2.4e-13  Score=129.16  Aligned_cols=286  Identities=15%  Similarity=0.182  Sum_probs=160.5

Q ss_pred             CchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHHh---cC-----C-CCEEEecCCCCCcHHHHHhhhc------cc
Q 016612           54 NPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHL---LG-----T-GEEIVAGDDLYGGTDRLLSRVT------PK  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~~---~~-----~-g~~Vlv~~~~~~~~~~~~~~~~------~~  116 (386)
                      ++...++.+.+.+++.  .+...+++||++|+.+.+.+   ..     + ..+|+.-...|++.......+.      +.
T Consensus        88 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~  167 (442)
T PRK13360         88 HPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKA  167 (442)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhc
Confidence            3455566677777653  34678889999998643332   11     2 3578877777766421100110      00


Q ss_pred             CC---cEEEEeCCC------------------CHHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHH
Q 016612          117 TG---VVVKRVNTC------------------DLDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHA  167 (386)
Q Consensus       117 ~g---~~~~~v~~~------------------d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  167 (386)
                      ++   ..+.+++..                  ..+++++.+.    +++.+|+++......|.+.|    +++|.++|++
T Consensus       168 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~  247 (442)
T PRK13360        168 FGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDK  247 (442)
T ss_pred             cCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            11   112222221                  1356676663    56889999999888898887    9999999999


Q ss_pred             cCCEEEEeCCC-CCCCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh-------hhhcCCC
Q 016612          168 HGALLLVDNSI-MSPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSG  234 (386)
Q Consensus       168 ~~~~li~D~a~-~~~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-------~~~~~~~  234 (386)
                      ||+++|+||++ +.|....     .....+|++  +++|.+++ +.+.+|.++++ +++.+.+..-       ......+
T Consensus       248 ~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv--t~gK~l~g-G~~P~gav~~~-~~i~~~~~~~~~~~~~~~~~~T~~  323 (442)
T PRK13360        248 HGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL--TCAKGLTN-GAIPMGAVFVS-SEIHDAFMQGPEAGIEFFHGYTYS  323 (442)
T ss_pred             cCCEEEEechhhCCCCCccchhhhhcCCCCcee--eeeecccc-CccceEEEEEc-HHHHHHhhcCCccccccccCCCCC
Confidence            99999999998 3333221     123356877  56999964 11335667665 4565544321       1122234


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-----H
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----L  309 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----~  309 (386)
                      .++...+++...++.+..  +...++++.+.+++.+.-.       .+...+.+    .+.++.|.+..+.+..     .
T Consensus       324 g~pl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~l~-------~l~~~~~v----~~vrG~Gl~~~~~l~~~~~~~~  390 (442)
T PRK13360        324 GHPLACAAALATLDLYER--EGLLTRAARLAPYWEDALH-------SLRDAPHV----IDIRNLGLVGAVELAPRDGKPG  390 (442)
T ss_pred             CCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH-------HhhcCCCe----eeeeccceEEEEEEecCCCCcc
Confidence            466666666555554322  2233444444444433210       01111100    1124556666665521     1


Q ss_pred             HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      ....++.+.+..+|+.+..+                            .+.+|+++.    .++++++++.|.++|+++
T Consensus       391 ~~~~~~~~~l~~~Gvl~~~~----------------------------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        391 KRAYEVFLKCFEKGLMIRYT----------------------------GDILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             hhHHHHHHHHHHCCcEEEec----------------------------CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence            23456666777777755421                            123888854    588888888888888653

>PRK12403 putative aminotransferase; Provisional

Probab=99.56  E-value=5.8e-13  Score=127.17  Aligned_cols=283  Identities=15%  Similarity=0.122  Sum_probs=158.5

Q ss_pred             CchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHHhc--------CCCCE-EEecCCCCCcH-HHHHhhhcc-----c
Q 016612           54 NPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHLL--------GTGEE-IVAGDDLYGGT-DRLLSRVTP-----K  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~~~--------~~g~~-Vlv~~~~~~~~-~~~~~~~~~-----~  116 (386)
                      ++...++++.++++++  .+.+++++||++|+.+.+.+.        ++++. |+.-..+|++. ...+ .+..     .
T Consensus        97 ~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~-s~s~~~~~~~  175 (460)
T PRK12403         97 HPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAAT-ALGGMKFMHE  175 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhh-hcCCCccccc
Confidence            3567788888888876  357888999999986433321        23333 44444455443 3222 1110     0


Q ss_pred             CC---cEEEEeCCC-----------------CHHHHHhhh----CCCceEEEEeCCCCCCccccc----HHHHHHHHHHc
Q 016612          117 TG---VVVKRVNTC-----------------DLDEVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAH  168 (386)
Q Consensus       117 ~g---~~~~~v~~~-----------------d~~~l~~~~----~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~  168 (386)
                      .+   -.+..++..                 +.+++++.+    .+++.+|+++......|.+.+    +++|.++|++|
T Consensus       176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~  255 (460)
T PRK12403        176 MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY  255 (460)
T ss_pred             cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence            00   012233211                 124555544    256789999998888888876    99999999999


Q ss_pred             CCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCCc-eEEEEEEcChhHHHHHHHh----hhhcCCCCCh
Q 016612          169 GALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFL----QNAEGSGLAP  237 (386)
Q Consensus       169 ~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~-~~G~i~~~~~~~~~~~~~~----~~~~~~~~~~  237 (386)
                      |+++|+||+++ .|-..     ......+|+++  ++|.+++  |. .+|.++++ +++.+.+...    ......+.++
T Consensus       256 g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lgg--G~~Piga~v~~-~~i~~~~~~~~~~~~~~~T~~gnP  330 (460)
T PRK12403        256 DVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTS--GYVPMGGLVLS-KRIAEALVEQGGVFAHGLTYSGHP  330 (460)
T ss_pred             CCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--Ecccccc--cccceEEEEEC-HHHHHHHhcCCCccccCCCCCCCH
Confidence            99999999985 22221     12234578886  6999875  32 35666665 5565544321    1122334667


Q ss_pred             hhHHHHHhcCCcHHHH--HHHHH-HHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----
Q 016612          238 FDCWICLRGVKTMALR--VEKQQ-DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----  309 (386)
Q Consensus       238 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----  309 (386)
                      ...++++..++.+...  .++.. +..+.+.+.|++..          ..++.    ..+.++.|.++.+.+...     
T Consensus       331 l~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~----------~~~~~----i~~vrG~Gl~~gie~~~~~~~~~  396 (460)
T PRK12403        331 VAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVF----------GDHPL----VGEVQGAGLVAALQFAEDKATRK  396 (460)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH----------hcCCC----EEeEeecceEEEEEEccCccccc
Confidence            7777766666544321  12221 23333444343211          11110    112267788888887211     


Q ss_pred             ------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHH
Q 016612          310 ------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDK  379 (386)
Q Consensus       310 ------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~  379 (386)
                            .....+...+..+|+.+....                            +.+|+++.    .++++++++.+.+
T Consensus       397 ~~~~~~~~~~~~~~~~~~~Gll~~~~~----------------------------~~~~l~Ppl~it~~eid~~~~~l~~  448 (460)
T PRK12403        397 RFANENDLAWRCRTIGFEEGVIIRSTL----------------------------GRMIMAPALVAGRAEIDELVDKTRI  448 (460)
T ss_pred             cccchhHHHHHHHHHHHhCCEEEEecC----------------------------CEEEEECCCCCCHHHHHHHHHHHHH
Confidence                  112234444455666543211                            12666654    4889999999999


Q ss_pred             HHhcC
Q 016612          380 ALRTG  384 (386)
Q Consensus       380 ~l~~~  384 (386)
                      +|+++
T Consensus       449 al~~~  453 (460)
T PRK12403        449 AVDRT  453 (460)
T ss_pred             HHHHH
Confidence            88754

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.56  E-value=3.3e-13  Score=128.53  Aligned_cols=285  Identities=14%  Similarity=0.145  Sum_probs=163.7

Q ss_pred             chHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhhcc-----cCC-----c
Q 016612           55 PTRDALESLLAKLDKA--DRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTP-----KTG-----V  119 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~-----~~g-----~  119 (386)
                      +...++.+.|.+..+.  +...+++||++|+.+.+.   ....+.+|+.-...|++.......+..     ..+     .
T Consensus        96 ~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~  175 (457)
T PRK05639         96 ERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMP  175 (457)
T ss_pred             HHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCC
Confidence            4566777777777643  467888999999864333   233456788777777664322112111     011     1


Q ss_pred             EEEEeCCC-------------CH--------HHHHhhh------CCCceEEEEeCCCCCCccccc----HHHHHHHHHHc
Q 016612          120 VVKRVNTC-------------DL--------DEVASAI------GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAH  168 (386)
Q Consensus       120 ~~~~v~~~-------------d~--------~~l~~~~------~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~  168 (386)
                      .+..++..             +.        +.+++.+      .+++.+|+++......|.+.|    +++|.++|++|
T Consensus       176 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~  255 (457)
T PRK05639        176 NVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH  255 (457)
T ss_pred             CceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence            12333322             12        2344443      357899999988887777664    89999999999


Q ss_pred             CCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHH
Q 016612          169 GALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       169 ~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      |+++|+||++.. |-..     ......+|+++  ++|.+++  |+.+|+++++ +++.+... -......+.++...++
T Consensus       256 g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g--G~pi~av~~~-~~i~~~~~-~~~~~T~~g~p~~~aa  329 (457)
T PRK05639        256 GILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVAS--GMGLSGVIGR-KELMDLTS-GSALLTPAANPVISAA  329 (457)
T ss_pred             CCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcC--CCcceeEEeh-HHHHhhcC-CCcccCCCcCHHHHHH
Confidence            999999999862 1111     11234678887  6999974  3446888876 44554211 1111223455666666


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHhhCCC-cceEecCCCCCCCchhhhhhccCCCCceEEEEeC------CHHhHHHH
Q 016612          243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG------SLALSKHV  315 (386)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~l  315 (386)
                      .+..++.+..  +...++.+.+.+++.+.-. +.. .++.+          .+.++.|.++.+.+.      +......+
T Consensus       330 a~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l~~-~~~~~----------~~VrG~Gl~~gve~~~~~~~~~~~~~~~~  396 (457)
T PRK05639        330 AEATLEIIEE--ENLLKNALKVGEFIKKRLLEMKE-SFEVI----------GDVRGKGLMIGVEIVKENGKPDPELTGKI  396 (457)
T ss_pred             HHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHH-hCCCE----------EeeccceeEEEEEEecCCCCCCHHHHHHH
Confidence            5555544322  2333444444444432110 000 00111          122677888888762      22345677


Q ss_pred             HhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                      .+.+..+|+.+...+                         ...+.+|+.+.+    ++++++++.+.+++++
T Consensus       397 ~~~~~~~Gv~~~~~g-------------------------~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~  443 (457)
T PRK05639        397 CWRAFELGLILPSYG-------------------------MFGNVIRITPPLVITKEIAEKGLEIMERAIKD  443 (457)
T ss_pred             HHHHHhCCeEEeecC-------------------------CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            777777787654311                         113458888753    7788888888887754

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.55  E-value=7.9e-15  Score=130.61  Aligned_cols=165  Identities=28%  Similarity=0.378  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhcCCCCEEEecCCC---CCcHHHHHhhhcccCCcEEEEeCCC---CHH
Q 016612           57 RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDL---YGGTDRLLSRVTPKTGVVVKRVNTC---DLD  130 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~---~~~~~~~~~~~~~~~g~~~~~v~~~---d~~  130 (386)
                      ...+++.+++++|+++.++++++++|+..++..+.+|.+|+++...   +++.+++ ..+.+..|.++++|-..   .++
T Consensus        49 ~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la~~~EvIvsRGelVeiGgsFRi-p~vm~~sGa~lvEVGttN~t~~~  127 (367)
T PF03841_consen   49 YAHVEELLCELTGAEAALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRI-PDVMRQSGARLVEVGTTNRTHLS  127 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            4567888999999999999999999998777766778899988863   3444433 46778899999998875   588


Q ss_pred             HHHhhhCCCceEEEEeCCCCCC--ccc--ccHHHHHHHHHHcCCEEEEeCCCC---------C---CCccCCCCCCccEE
Q 016612          131 EVASAIGPWTKLVWVESPTNPR--QQI--CDIRKIAEMAHAHGALLLVDNSIM---------S---PVLSRPLELGADIV  194 (386)
Q Consensus       131 ~l~~~~~~~~~~v~~~~~~npt--G~~--~~l~~i~~la~~~~~~li~D~a~~---------~---~~~~~~~~~~~di~  194 (386)
                      +++++++++|.+++-.+++|..  |+.  .+++++++++++|++++++|...+         .   +........|+|++
T Consensus       128 Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV  207 (367)
T PF03841_consen  128 DYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLV  207 (367)
T ss_dssp             ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEE
T ss_pred             cccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEE
Confidence            9999999999999999988864  333  479999999999999999999862         1   22234456799999


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHH
Q 016612          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (386)
Q Consensus       195 ~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~  226 (386)
                      ++|..|.++||.   .|++++++ ++.++++.
T Consensus       208 ~fSGdKlLGGPQ---aGiI~Gkk-~lI~~lk~  235 (367)
T PF03841_consen  208 TFSGDKLLGGPQ---AGIIVGKK-ELIEKLKK  235 (367)
T ss_dssp             EEETTSSSSS-S----EEEEEEH-HHHHHHHH
T ss_pred             EEECCCcCCCCC---eEEEEeCH-HHHHHHhh
Confidence            999999998875   79999985 45555543

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.55  E-value=3.2e-13  Score=128.33  Aligned_cols=285  Identities=16%  Similarity=0.127  Sum_probs=163.4

Q ss_pred             CchHHHHHHHHHhhcC---CCceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhhccc-------C---
Q 016612           54 NPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPK-------T---  117 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g---~~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-------~---  117 (386)
                      ++...++.+.|.+..+   .+...+++||++|+.+.+.   .....++|+.-+..|++.......+...       +   
T Consensus        96 ~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~  175 (441)
T PRK05769         96 YEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPL  175 (441)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCC
Confidence            4566777778877764   2467788999999864332   2233467777777776653221121100       0   


Q ss_pred             CcEEEEeCCC----------C--------HHHHHh-hh-----CCCceEEEEeCCCCCCccccc----HHHHHHHHHHcC
Q 016612          118 GVVVKRVNTC----------D--------LDEVAS-AI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHG  169 (386)
Q Consensus       118 g~~~~~v~~~----------d--------~~~l~~-~~-----~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~  169 (386)
                      ...+..++..          +        .+.+++ .+     .+++.+|+++......|.+.|    +++|.++|++||
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g  255 (441)
T PRK05769        176 MPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYG  255 (441)
T ss_pred             CCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            0112233221          1        233554 22     257889999999888898887    999999999999


Q ss_pred             CEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHH
Q 016612          170 ALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (386)
Q Consensus       170 ~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (386)
                      +++|+||++.. +....     ......|+++  ++|.+++  |+++|++++++ ++..... .......+.++...+++
T Consensus       256 ~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~~--G~p~gav~~~~-~i~~~~~-~~~~~T~~g~p~~~aaa  329 (441)
T PRK05769        256 ILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIAG--GLPLGAVIGRA-ELMFLPP-GSHANTFGGNPVAAAAA  329 (441)
T ss_pred             CEEEEechhhCCCcccceehhhccCCCCCEEE--EcccccC--CcccEEEEEeh-hhhhcCC-CCCCCCCCcCHHHHHHH
Confidence            99999999862 22111     1123468875  6899964  56788888874 4443221 11112223456666665


Q ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC------HHhHHHHHh
Q 016612          244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS------LALSKHVVE  317 (386)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~l~~  317 (386)
                      ...++.+..   ...++.+.+.+++.+.-.  .+.    .+++.    ..+.++.|.++.+.+.+      ......+.+
T Consensus       330 ~a~L~~l~~---~~~~~~~~~g~~l~~~L~--~l~----~~~~~----~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~  396 (441)
T PRK05769        330 LATLEELEE---GLLENAQKLGEYLRKELK--ELK----EKYEF----IGDVRGLGLMIGVELVKDRKEPDPKLRDKVLY  396 (441)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHH----HhCCC----eeeeecceEEEEEEeccCCccccHHHHHHHHH
Confidence            555554432   334444444444432110  000    00110    01235678888888732      234566777


Q ss_pred             hcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       318 ~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      .+...|+.+.+.                           +.+.+|+++.    .++++++++.+.+++++.
T Consensus       397 ~~~~~Gil~~~~---------------------------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        397 EAFKRGLLLLGA---------------------------GKSAIRIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             HHHhCCcEEecC---------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            777777754321                           1234888865    488888888888888653

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.55  E-value=4.1e-13  Score=127.86  Aligned_cols=285  Identities=15%  Similarity=0.143  Sum_probs=165.3

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHhc---------CCCCEEEecCCCCCcHHHHHhhhccc------
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLL---------GTGEEIVAGDDLYGGTDRLLSRVTPK------  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~~---------~~g~~Vlv~~~~~~~~~~~~~~~~~~------  116 (386)
                      ++...++.+.+.+..+.  +...+++||++|+.+.+.+.         ....+|+.-...|++.......+...      
T Consensus        96 ~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~  175 (453)
T PRK06943         96 HEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDA  175 (453)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcc
Confidence            34555666777776654  36778889999986433321         12356887777776642111111100      


Q ss_pred             CC---cEEEEeCCC-----------------CHHHHHhhhC---CCceEEEEeC-CCCCCccccc----HHHHHHHHHHc
Q 016612          117 TG---VVVKRVNTC-----------------DLDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAH  168 (386)
Q Consensus       117 ~g---~~~~~v~~~-----------------d~~~l~~~~~---~~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~  168 (386)
                      ++   ..+..++..                 +++++++.+.   +++.+|+++. +....|.+.+    +++|.++|++|
T Consensus       176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~  255 (453)
T PRK06943        176 YDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRY  255 (453)
T ss_pred             cccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHc
Confidence            00   011122211                 2466776664   6789999998 4776777654    89999999999


Q ss_pred             CCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHh------hhhcCCCC
Q 016612          169 GALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL------QNAEGSGL  235 (386)
Q Consensus       169 ~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~------~~~~~~~~  235 (386)
                      |+++|.||++. .|-..     ......+|+++.  +|.++|  | +.+|.++++ +++.+.+..-      ......+.
T Consensus       256 gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~--gKgl~g--G~~Pi~av~~~-~ei~~~~~~~~~~~~~~~~~T~~g  330 (453)
T PRK06943        256 GVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCL--SKGISG--GYLPLSLVLSR-DAIFAAFYDDDVTRGFLHSHSYTG  330 (453)
T ss_pred             CCEEEeechhhCCCCCcchhHHHhCCCCCCeEee--ehhhcc--CcccceEEEEc-HHHHHhhcccCccCCccCCCCCCC
Confidence            99999999975 22222     122346799975  999865  4 347778776 4565544311      11122234


Q ss_pred             ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CH----H
Q 016612          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SL----A  310 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~----~  310 (386)
                      ++...++.+..++.+..  +...++.+.+.+++.+.-.       .+...+.+    .+.++.|.++.+.+. +.    .
T Consensus       331 npl~~aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~-------~l~~~~~v----~~vrG~Gl~~gvel~~~~~~~~~  397 (453)
T PRK06943        331 NPLACRAALATLDLFAE--DDVLARNARKSARLRAALA-------PLAAHPQV----RHLRQRGTIFAFDVALDGDAART  397 (453)
T ss_pred             CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH-------HHhcCCCE----EeEeccccEEEEEEccCCCcchH
Confidence            56666666665554332  2344555555554443210       01111111    123678888888874 21    2


Q ss_pred             hHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhcC
Q 016612          311 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       311 ~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~~  384 (386)
                      ...++.+.+..+|+.....+                            +.+|+++    +.++++++++.+.++|+++
T Consensus       398 ~~~~i~~~~~~~Gll~~~~g----------------------------~~l~~~Ppl~it~~eid~~~~~l~~al~~~  447 (453)
T PRK06943        398 FSRRFFEAALERELLLRPIG----------------------------TTVYLMPPYVLDDDEIAWLAERTRATLDAT  447 (453)
T ss_pred             HHHHHHHHHHHCCcEEEecC----------------------------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            35567777777787543211                            2377774    4588899999999888753

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.54  E-value=4.3e-13  Score=118.66  Aligned_cols=301  Identities=14%  Similarity=0.131  Sum_probs=169.1

Q ss_pred             CccceeeccCCC--CCCCCCcccceeeeeeeecCCCC-CCCCccccCC-CCc-hHHHHHHHHHhhcCCC---------ce
Q 016612            8 GVSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSAT-ENGPYDYTRS-GNP-TRDALESLLAKLDKAD---------RA   73 (386)
Q Consensus         8 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---------~~   73 (386)
                      -+.+..+|+|-+  .|..|  ..|++++.......+. ......|-+- |.+ ..+++.+.+   ||.+         ..
T Consensus        23 D~R~~KVNLgIGvY~de~G--k~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~ll---FG~d~~~l~~~Rv~t   97 (396)
T COG1448          23 DPRPNKVNLGIGVYKDEDG--KTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLL---FGADSPALAEDRVAT   97 (396)
T ss_pred             CCCcCeeeeeeeeeeCCCC--CcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHh---cCCCcHHHHhhhHhh
Confidence            344566777733  33355  4445554333222221 2344456655 776 455555554   5643         25


Q ss_pred             EEeCcHHHHHHHH---HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhC--CCce
Q 016612           74 LCFTSGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG--PWTK  141 (386)
Q Consensus        74 i~~~~gt~al~~~---~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~--~~~~  141 (386)
                      +-+.+||.|+...   ++...+...|.+++|+|+.+.    .+++..|.++..++.-       |.+.+...+.  +...
T Consensus        98 ~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~----~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~  173 (396)
T COG1448          98 VQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHK----AIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGS  173 (396)
T ss_pred             eecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHH----HHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCC
Confidence            6778999998644   444557778999999999885    6667889988877742       6666666665  3445


Q ss_pred             EEEEe-CCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC---CCccCC------CCCCc-cEEEeccccccccCCC
Q 016612          142 LVWVE-SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS---PVLSRP------LELGA-DIVMHSATKFIAGHSD  207 (386)
Q Consensus       142 ~v~~~-~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~---~~~~~~------~~~~~-di~~~S~sK~~~g~~g  207 (386)
                      +|++- .+|||||.-..   +++|.++.++.+++-++|-+|..   |.-.+.      ...+. -+++.|+||.|+ .-|
T Consensus       174 vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfg-LYg  252 (396)
T COG1448         174 VVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFG-LYG  252 (396)
T ss_pred             EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhh-hhh
Confidence            66664 77999999874   78899999999999999999742   211111      11122 689999999995 445


Q ss_pred             ceEEEE--EEcChhHHH----HHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCC
Q 016612          208 VMAGVL--AVKGERLAK----ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  281 (386)
Q Consensus       208 ~~~G~i--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  281 (386)
                      -|+|.+  ++.+.+...    .+....+..-++++...+.....-+..- .....+.+....+++.+.+.+   ..+.+.
T Consensus       253 ERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p-~Lra~W~~El~~Mr~Ri~~mR---~~lv~~  328 (396)
T COG1448         253 ERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNP-ELRAEWEQELEEMRQRILEMR---QALVDA  328 (396)
T ss_pred             hccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            677763  333333322    3344444444454444444443333332 122333333333333333322   111111


Q ss_pred             CCC-CCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCccee
Q 016612          282 LPE-HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSI  324 (386)
Q Consensus       282 l~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi  324 (386)
                      |.. .+...  ++....+.+||++.=-.++...++.++..++.+
T Consensus       329 L~~~~~~~~--f~~i~~Q~GMFsy~Gls~~QV~rLree~~IY~v  370 (396)
T COG1448         329 LKALGAPRN--FDFIISQRGMFSYTGLSPEQVDRLREEFGIYLV  370 (396)
T ss_pred             HHhhCCCcc--cchHhhcCceeecCCCCHHHHHHHHHhccEEEe
Confidence            211 00000  001123567888764445556777777666544

>PRK07678 aminotransferase; Validated

Probab=99.54  E-value=7e-13  Score=126.38  Aligned_cols=295  Identities=17%  Similarity=0.166  Sum_probs=166.8

Q ss_pred             CCchHHHHHHHHHhhcCCC-ceEEeCcHHHHHHHHHHh----c--C--C-CCEEEecCCCCCcHHHHHhhhccc------
Q 016612           53 GNPTRDALESLLAKLDKAD-RALCFTSGMAALAAVTHL----L--G--T-GEEIVAGDDLYGGTDRLLSRVTPK------  116 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~-~~i~~~~gt~al~~~~~~----~--~--~-g~~Vlv~~~~~~~~~~~~~~~~~~------  116 (386)
                      .++...++.+.+.++++.. ...+++||++|+.+.+.+    .  +  + ..+|+.-...|++...........      
T Consensus        87 ~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~  166 (451)
T PRK07678         87 SHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYK  166 (451)
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccc
Confidence            3455566777777776544 567778999998633221    1  1  2 256787777776653221111100      


Q ss_pred             C---CcEEEEeCCC--------------C---HHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHc
Q 016612          117 T---GVVVKRVNTC--------------D---LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAH  168 (386)
Q Consensus       117 ~---g~~~~~v~~~--------------d---~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~  168 (386)
                      +   ...+..++..              +   ++++++.+.    +++.+|+++......|.+.+    ++++.++|++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~  246 (451)
T PRK07678        167 YEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKH  246 (451)
T ss_pred             cCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc
Confidence            0   0011222211              1   223455553    57899999988877777764    89999999999


Q ss_pred             CCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh------hhhcCCCCC
Q 016612          169 GALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL------QNAEGSGLA  236 (386)
Q Consensus       169 ~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~------~~~~~~~~~  236 (386)
                      |+++|+||++. .|-..     ......+|+++  ++|.+++. .+.+|.++++ +++.+.+..-      ......+.+
T Consensus       247 g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt--~gK~lggG-~~Pi~av~~~-~~i~~~~~~~~~~~~~~h~~T~~gn  322 (451)
T PRK07678        247 GALLISDEVICGFGRTGKAFGFMNYGVKPDIIT--MAKGITSA-YLPLSATAVK-KEIYEAFKGKGEYEHFRHVNTFGGN  322 (451)
T ss_pred             CCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE--eecccccC-CcceeEEEEc-HHHHHHHhccCcccccccCCCCCcC
Confidence            99999999984 33221     12334579886  59999652 2457888876 4566544321      122333556


Q ss_pred             hhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC---------
Q 016612          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---------  307 (386)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~---------  307 (386)
                      +...+++...++.+..  +...++.+.+.+++.+.-      ...+..++..    .+.++.|.++.+.+.         
T Consensus       323 p~~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~l------~~~~~~~~~v----~~vrg~Gl~~~i~~~~~~~~~~~~  390 (451)
T PRK07678        323 PAACALALKNLEIMEN--ENLIERSAQLGELLLEQL------KEELGEHPLV----GDIRGKGLLVGIELVNDKETKEPA  390 (451)
T ss_pred             HHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHH------HHHHhcCCCE----EEEEeeceEEEEEEecCCcccCcC
Confidence            6666666666654432  233344444444433211      0001111110    122567888888872         


Q ss_pred             CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          308 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       308 ~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      +.....++...+..+|+.+...+..  +  |                 ...+.+|+++.    .++++++++.+.++|++
T Consensus       391 ~~~~a~~i~~~l~~~Gv~~~~~g~~--v--~-----------------~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~  449 (451)
T PRK07678        391 DNDKVASVVAACKEKGLIIGKNGDT--V--A-----------------GYNNVLTLSPPLVISSEEIAFIVGTLKTALER  449 (451)
T ss_pred             chHHHHHHHHHHHHCCcEEeecCcc--c--c-----------------CCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            2234567777888888765431100  0  0                 01245999864    47788888888888865


Q ss_pred             C
Q 016612          384 G  384 (386)
Q Consensus       384 ~  384 (386)
                      .
T Consensus       450 ~  450 (451)
T PRK07678        450 I  450 (451)
T ss_pred             c
Confidence            3

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.54  E-value=6.4e-13  Score=126.35  Aligned_cols=286  Identities=17%  Similarity=0.203  Sum_probs=161.0

Q ss_pred             CchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHHh---c----C--CCCEEEecCCCCCcHHHHHhhhc------cc
Q 016612           54 NPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHL---L----G--TGEEIVAGDDLYGGTDRLLSRVT------PK  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~~---~----~--~g~~Vlv~~~~~~~~~~~~~~~~------~~  116 (386)
                      ++...++.+.|.+++.  .+...+++||++|+.+.+.+   .    .  ...+|+.-...|++.......+.      ..
T Consensus        91 ~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~  170 (445)
T PRK09221         91 HPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKM  170 (445)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhc
Confidence            4455566777777663  34678889999998643321   1    1  13468777777766421100110      00


Q ss_pred             C---CcEEEEeCCC------------------CHHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHH
Q 016612          117 T---GVVVKRVNTC------------------DLDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHA  167 (386)
Q Consensus       117 ~---g~~~~~v~~~------------------d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  167 (386)
                      +   ...+..++..                  ..+++++.+.    +++.+|+++......|.+.|    +++|.++|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~  250 (445)
T PRK09221        171 FGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDK  250 (445)
T ss_pred             cCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHH
Confidence            0   0112222211                  1346666653    56889999999888899887    9999999999


Q ss_pred             cCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHH-------hhhhcCCC
Q 016612          168 HGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSG  234 (386)
Q Consensus       168 ~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~-------~~~~~~~~  234 (386)
                      +|+++|+||+++ .|-..     ......+|+++  ++|.+++. .+.+|.++++ +++.+.+..       .......+
T Consensus       251 ~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~--~gK~l~gG-~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~~T~~  326 (445)
T PRK09221        251 HGILLIFDEVITGFGRLGAAFAAERFGVTPDIIT--FAKGLTNG-AIPMGAVIAS-DEIYDAFMQGPEYAIEFFHGYTYS  326 (445)
T ss_pred             cCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEE--eccccccC-cccceeeEEc-HHHHHhhccCcccccccccccCCC
Confidence            999999999984 33221     11223468774  69998641 1235777776 456554421       11112234


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-----H
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----L  309 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----~  309 (386)
                      .++...++++..++.+..  +...++.+.+.+++++.-.       .+..++.    ..+.++.|.+..+.+..     .
T Consensus       327 ~~pl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~-------~l~~~~~----v~~vrg~Gl~~~v~~~~~~~~~~  393 (445)
T PRK09221        327 AHPVACAAGLATLDIYRE--EDLFERAAELAPYFEDAVH-------SLKGLPH----VIDIRNIGLVAGIELAPRPGAPG  393 (445)
T ss_pred             cCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH-------hhccCCC----EEEEecCceEEEEEEeccccccc
Confidence            455555555555543322  2334455555554443110       0111110    01225667777776632     1


Q ss_pred             HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      ....++.+.+..+|+.++.+.                            +.+|+++.    .++++++++.|+++|+++
T Consensus       394 ~~~~~~~~~~~~~Gv~~~~~~----------------------------~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        394 ARGYEAFMKCFEKGLLVRYTG----------------------------DTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             chHHHHHHHHHHCCeEEeecC----------------------------CEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            124567777777787654321                            23888864    478888888888888653

>PRK06149 hypothetical protein; Provisional

Probab=99.54  E-value=5.8e-13  Score=137.99  Aligned_cols=326  Identities=16%  Similarity=0.158  Sum_probs=186.2

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhc--CCCceEEeCcHHHHHHHHHH-
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD--KADRALCFTSGMAALAAVTH-   88 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~--g~~~~i~~~~gt~al~~~~~-   88 (386)
                      +.+++..+...+|..+|.+.++.......    .. ..++...+...++.+.|++++  +.+.+.+++||++|..+.+. 
T Consensus       586 ~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~----l~-~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~Alkl  660 (972)
T PRK06149        586 SYLDMVNNVTVLGHGHPRLAAAAARQWSL----LN-TNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRL  660 (972)
T ss_pred             EEEECCCCccccCCCCHHHHHHHHHHHHh----cc-ccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHH
Confidence            34444422234676777766543221111    10 111223456778888888887  34578889999999864333 


Q ss_pred             --hcCCCCEEEecCCCCCcHHHHHhhhc-c---c--------CCcEEEEeC------C--CC-----HHHHHhhh-----
Q 016612           89 --LLGTGEEIVAGDDLYGGTDRLLSRVT-P---K--------TGVVVKRVN------T--CD-----LDEVASAI-----  136 (386)
Q Consensus        89 --~~~~g~~Vlv~~~~~~~~~~~~~~~~-~---~--------~g~~~~~v~------~--~d-----~~~l~~~~-----  136 (386)
                        .......|++.+..|++.......+. .   .        .++.....+      .  .+     .+++++.+     
T Consensus       661 Ar~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  740 (972)
T PRK06149        661 AWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDA  740 (972)
T ss_pred             HHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhh
Confidence              23334567776666665321110110 0   0        011111111      1  11     23333332     


Q ss_pred             -CCCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCC-CCCCccCC------CCCCccEEEecccccccc
Q 016612          137 -GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSRP------LELGADIVMHSATKFIAG  204 (386)
Q Consensus       137 -~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~-~~~~~~~~------~~~~~di~~~S~sK~~~g  204 (386)
                       .+++.+|+++......|.+.+    +++|.++|++||+++|+||++ +.|-....      .....|++  +++|.+++
T Consensus       741 ~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~lg~  818 (972)
T PRK06149        741 SGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKGMGN  818 (972)
T ss_pred             cCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE--EecccccC
Confidence             257889999988887888877    999999999999999999998 34433321      23457888  46999964


Q ss_pred             CCCceEEEEEEcChhHHHHHHHhh-hhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCC
Q 016612          205 HSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  283 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  283 (386)
                        |+.+|+++++ +++.+.+.... ...+.+.++..+++.+..++.+..  +.+.++++.+.+++.+.-.  . +   ..
T Consensus       819 --G~Pl~av~~~-~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~--e~l~~~~~~~G~~l~~~L~--~-l---~~  887 (972)
T PRK06149        819 --GHPLGAVITR-REIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE--EKLQENARRVGDHLKARLE--A-L---AD  887 (972)
T ss_pred             --CeeeEEEEEc-HHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH--H-H---HH
Confidence              4567888886 55665553211 122345677777777666654432  3456666555555543210  0 0   01


Q ss_pred             CCCchhhhhhccCCCCceEEEEeC--------CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcC
Q 016612          284 EHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  355 (386)
Q Consensus       284 ~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~  355 (386)
                      .++-    ....++.|.++.+.+.        .......+.+.+..+|+.+.+.+.                        
T Consensus       888 ~~~~----i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~------------------------  939 (972)
T PRK06149        888 RHPL----IGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGD------------------------  939 (972)
T ss_pred             hCCC----eEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCC------------------------
Confidence            1110    1223678888888872        223456778888888886543211                        


Q ss_pred             CCCCeEEEEe----ccCChHHHHHHHHHHHhcC
Q 016612          356 LTEDLVRISV----GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       356 ~~~~~iRis~----~~~~~~~~i~~l~~~l~~~  384 (386)
                       ..+.+|+..    +.++++++++.+.++|.+.
T Consensus       940 -~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~~  971 (972)
T PRK06149        940 -HLNILKIKPPLCLDRESADFFVDMLDRVLTEG  971 (972)
T ss_pred             -CCCEEEEECCCcCCHHHHHHHHHHHHHHHHhh
Confidence             134577755    4588999999999988753

>PRK07046 aminotransferase; Validated

Probab=99.53  E-value=1.2e-12  Score=124.59  Aligned_cols=282  Identities=16%  Similarity=0.102  Sum_probs=164.2

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHH-HHhhhc--------ccCC-----
Q 016612           56 TRDALESLLAKLDKADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDR-LLSRVT--------PKTG-----  118 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~-~~~~~~--------~~~g-----  118 (386)
                      ...++.+.+.+.++.+...+++|||+|....+.   .....++|+.-+..|++... .+....        ...|     
T Consensus       116 ~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~  195 (453)
T PRK07046        116 DAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDL  195 (453)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccc
Confidence            344455566666666788899999998753332   23345678877777777521 111110        0011     


Q ss_pred             -cEEEEeCCCCHHHHHhhhC-CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC----CCCccCCCC
Q 016612          119 -VVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLE  188 (386)
Q Consensus       119 -~~~~~v~~~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~----~~~~~~~~~  188 (386)
                       ..+..++..|++++++.+. +++.+|+++......|.+.|    ++++.++|+++|+++|+||++.    .+-......
T Consensus       196 ~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~g  275 (453)
T PRK07046        196 TATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHG  275 (453)
T ss_pred             cCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhC
Confidence             1244556669999998885 57889999988877787765    8999999999999999999985    222222224


Q ss_pred             CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh---------hhcCCCCChhhHHHHHhcCCcHHH--HHHHH
Q 016612          189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---------NAEGSGLAPFDCWICLRGVKTMAL--RVEKQ  257 (386)
Q Consensus       189 ~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  257 (386)
                      ..+|+++  ++|.++|  |+.+|.++++ +++.+.+....         .....+.++...++.+..++.+..  ..++.
T Consensus       276 v~PDi~t--~gK~lgg--G~Pi~av~g~-~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~  350 (453)
T PRK07046        276 LEPDFLV--VGKPIAG--GVPCAVYGFS-AELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHM  350 (453)
T ss_pred             CCcccee--ehhhhcC--CCcceeeeeh-HHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHH
Confidence            4678886  6999975  4668888886 55665543210         111224455565555555443311  12222


Q ss_pred             HHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--------------CHHhHHHHHhhcCcce
Q 016612          258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------------SLALSKHVVETTKYFS  323 (386)
Q Consensus       258 ~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~l~~~g  323 (386)
                      .+..+.+.+.+++..          .+.+-.    ...++.|.++.+.+.              +......+...+..+|
T Consensus       351 ~~~g~~l~~~L~~l~----------~~~~~~----~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  416 (453)
T PRK07046        351 LALAARLAAGLRAVI----------ARHGLP----WHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRG  416 (453)
T ss_pred             HHHHHHHHHHHHHHH----------HhCCCC----eEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCC
Confidence            333333333333210          000000    011345666666542              1223345555666667


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe--ccCChHHHHHHHHHHHhcC
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--~~~~~~~~i~~l~~~l~~~  384 (386)
                      +.+.+.                            .+.++++.  +.+++++.++.+.++|+..
T Consensus       417 v~~~~~----------------------------~~~~~~~p~~t~~did~~~~~~~~~l~~~  451 (453)
T PRK07046        417 VLITPF----------------------------HNMMLVCPATTAADVDRLVAAFDACLGEL  451 (453)
T ss_pred             CEEecc----------------------------cCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence            654321                            11266665  4588899999999988764

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.53  E-value=1.7e-12  Score=119.76  Aligned_cols=275  Identities=16%  Similarity=0.123  Sum_probs=170.5

Q ss_pred             chHHHHHHHHHhhcCCC--c--eEEeCcHHHHHH-HHHHhc-CCCCEEEecCCCCCcHHHHHh-hhcccCCc-EEEEeCC
Q 016612           55 PTRDALESLLAKLDKAD--R--ALCFTSGMAALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLS-RVTPKTGV-VVKRVNT  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~--~i~~~~gt~al~-~~~~~~-~~g~~Vlv~~~~~~~~~~~~~-~~~~~~g~-~~~~v~~  126 (386)
                      .+.+++++.|.++++.+  .  .++.+|||.++. ++..++ ++|+.|++.. .|+ -  -|. .+++..|+ ++..++.
T Consensus        39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG-~--r~~~eia~~~g~~~v~~l~~  114 (374)
T TIGR01365        39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFG-K--GWVTDVTKQLKLPDVRVLEA  114 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHH-H--HHHHHHHHhcCCCCcEEEcC
Confidence            36788899999999864  2  345677889997 556677 5888898854 333 2  233 77788888 4555553


Q ss_pred             C-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccc
Q 016612          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (386)
Q Consensus       127 ~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~  201 (386)
                      .     ++++++.  +   +.|+++|....||...|++++.+.+  ++.++|+|.+.+.+..+-..+ +.|+++.|.+|.
T Consensus       115 ~~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d-~iDv~~tgsQK~  186 (374)
T TIGR01365       115 EYGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH-KLDVVTFSWQKV  186 (374)
T ss_pred             CCCCCCCHHHcCC--C---CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh-HCcEEEEechhc
Confidence            2     6777763  1   2367889999999999997666332  489999999988776653333 599999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHH--------H-hh---------hhc-C-C-CCChh-hHHHHHhcC------CcHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELY--------F-LQ---------NAE-G-S-GLAPF-DCWICLRGV------KTMALR  253 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~--------~-~~---------~~~-~-~-~~~~~-~~~~~~~~~------~~~~~~  253 (386)
                      +++|+|  .++++.+++.+.+.-.        . +.         ... + + ..++. ..+++...+      ..+..+
T Consensus       187 L~~ppG--ls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~  264 (374)
T TIGR01365       187 LGGEGA--HGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPL  264 (374)
T ss_pred             cCCCCc--eEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHH
Confidence            999998  6899988665533111        0 00         000 1 1 11111 112112222      246777


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC-ceEEEEeCCHH-----------hHHHHHhhcCc
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFLTGSLA-----------LSKHVVETTKY  321 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~-----------~~~~l~~~l~~  321 (386)
                      .++..++++.+.+.+++...+     .-+..         .+..++ .++++.++++.           +..++.+.++.
T Consensus       265 ~~Rh~~~a~~l~~~l~~lg~l-----~~~~~---------~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  330 (374)
T TIGR01365       265 IARADDNLAVLEAFVAKNNWI-----HFLAE---------TPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEK  330 (374)
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-----ccCCC---------ChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHH
Confidence            778888888888888876411     01110         001112 23444543321           25778888888


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-c---cCChHHHHHHHHHH
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G---IEDVNDLISDLDKA  380 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~---~~~~~~~i~~l~~~  380 (386)
                      +|+.+..|...                       ..+..+||+. +   .++++.+++.|.=+
T Consensus       331 ~gi~i~~G~~~-----------------------~~~~~fRIg~~G~i~~~di~~l~~~l~~~  370 (374)
T TIGR01365       331 EGVAYDIGSYR-----------------------DAPSGLRIWCGATVEKSDLECLCPWLDWA  370 (374)
T ss_pred             CCEEEeccccc-----------------------cCCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence            88876655531                       1235699985 3   36666666665433

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK07481 hypothetical protein; Provisional

Probab=99.53  E-value=5.6e-13  Score=127.00  Aligned_cols=286  Identities=19%  Similarity=0.191  Sum_probs=163.0

Q ss_pred             CchHHHHHHHHHhhcC---CCceEEeCcHHHHHHHHHHh----c----CC-CCEEEecCCCCCcHH-HHHhhhcc-----
Q 016612           54 NPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTHL----L----GT-GEEIVAGDDLYGGTD-RLLSRVTP-----  115 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g---~~~~i~~~~gt~al~~~~~~----~----~~-g~~Vlv~~~~~~~~~-~~~~~~~~-----  115 (386)
                      ++...++.+.|.++++   .+...+++||++|+.+.+.+    .    ++ ..+|+.-...|++.. ..+ .+..     
T Consensus        85 ~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~-s~~~~~~~~  163 (449)
T PRK07481         85 HPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGA-SVNGNTVFR  163 (449)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhh-ccCCCcccc
Confidence            3556667777777763   24677889999998643332    1    12 356777777776642 221 1110     


Q ss_pred             ------cCCcEEEEeC------C--CCHHH--------HHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHH
Q 016612          116 ------KTGVVVKRVN------T--CDLDE--------VASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMA  165 (386)
Q Consensus       116 ------~~g~~~~~v~------~--~d~~~--------l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la  165 (386)
                            ..|......+      .  .|+++        +++.+.    +++.+|+++......|.+.+    +++|.++|
T Consensus       164 ~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc  243 (449)
T PRK07481        164 RNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVC  243 (449)
T ss_pred             cccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHH
Confidence                  0122211111      1  13333        333332    57899999998887787764    89999999


Q ss_pred             HHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHh-------hhhc
Q 016612          166 HAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL-------QNAE  231 (386)
Q Consensus       166 ~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~-------~~~~  231 (386)
                      ++||+++|.||++.. |-..     ......+|+++.  +|.+++  | +.+|.++++ +++.+.+..-       ....
T Consensus       244 ~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~g--G~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~  318 (449)
T PRK07481        244 DRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCL--AKGITS--GYVPLGATMVN-ARIADAFEANADFGGAIMHGY  318 (449)
T ss_pred             HHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEE--eecccC--CCcCceEEEEc-HHHHHHHhccCccccccccCC
Confidence            999999999999752 2211     122345788865  999865  3 246777776 4566554321       1122


Q ss_pred             CCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC---
Q 016612          232 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---  308 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---  308 (386)
                      ..+.++...+++...++.+..  +...++++.+.+++.+.-.  . +.   ..++    ...+.++.|.++.+.+..   
T Consensus       319 T~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~--~-l~---~~~~----~i~~vrG~Glm~gi~l~~~~~  386 (449)
T PRK07481        319 TYSGHPVACAAALATLDIVVR--EDLPANAAKRGAYLLEGLQ--P-LK---ERFE----LVGDVRGKGLMLALDLVADKA  386 (449)
T ss_pred             CCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHH--H-Hh---hcCC----CeEEEeecceEEEEEeccccc
Confidence            233456666666555554322  2344444444444432110  0 00   0111    011236778888888721   


Q ss_pred             --------HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHH
Q 016612          309 --------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISD  376 (386)
Q Consensus       309 --------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~  376 (386)
                              ......+...+..+|+.+.+.+                            +.+|++.    +.++++++++.
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g----------------------------~~i~l~Ppl~it~~eid~~~~~  438 (449)
T PRK07481        387 TREPIDPSKGYANAVADVARENGVLVRPSG----------------------------TKIILSPPLVIQREDVDRIVDA  438 (449)
T ss_pred             ccCCCCchhHHHHHHHHHHHhCCeEEEecC----------------------------CEEEEECCCCCCHHHHHHHHHH
Confidence                    1234567777777787654321                            1267774    45889999999


Q ss_pred             HHHHHhcCC
Q 016612          377 LDKALRTGP  385 (386)
Q Consensus       377 l~~~l~~~~  385 (386)
                      +.++|+++.
T Consensus       439 l~~~l~~~~  447 (449)
T PRK07481        439 LDAGLSAVP  447 (449)
T ss_pred             HHHHHHhcc
Confidence            999987753

>PRK07482 hypothetical protein; Provisional

Probab=99.52  E-value=5.3e-13  Score=127.47  Aligned_cols=288  Identities=14%  Similarity=0.119  Sum_probs=165.1

Q ss_pred             CCchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHHhc-------C--CCCEEEecCCCCCcHHHHHhhhc------c
Q 016612           53 GNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHLL-------G--TGEEIVAGDDLYGGTDRLLSRVT------P  115 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~~~-------~--~g~~Vlv~~~~~~~~~~~~~~~~------~  115 (386)
                      .++...++.+.|.+...  .+...+++||++|+.+.+.+.       .  ...+|+.-...|++.......+.      .
T Consensus        92 ~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~  171 (461)
T PRK07482         92 GTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQ  171 (461)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhh
Confidence            34567778888888764  346778899999986443321       1  13568877777766421100110      0


Q ss_pred             cCC---cEEEEeCCC------------------CHHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHH
Q 016612          116 KTG---VVVKRVNTC------------------DLDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAH  166 (386)
Q Consensus       116 ~~g---~~~~~v~~~------------------d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~  166 (386)
                      .++   ..+..++..                  +++++++.+.    +++.+|+++......|.+.+    +++|.++|+
T Consensus       172 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~  251 (461)
T PRK07482        172 HFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLK  251 (461)
T ss_pred             ccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence            011   111122111                  3466777663    56899999988877777753    899999999


Q ss_pred             HcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCc-eEEEEEEcChhHHHHHHHh-------hhhcC
Q 016612          167 AHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFL-------QNAEG  232 (386)
Q Consensus       167 ~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~-~~G~i~~~~~~~~~~~~~~-------~~~~~  232 (386)
                      +||+++|+||++.. |-..     ......+|+++  ++|.++|  |. .+|.++++ +++.+.+...       .....
T Consensus       252 ~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~g--G~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~T  326 (461)
T PRK07482        252 KYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTS--AYAPLSGSIVG-EKVWDVLEQGSDEHGAIGHGWT  326 (461)
T ss_pred             HhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--Ecccccc--Cccccceeeec-HHHHHHHhcccccCCccccCCC
Confidence            99999999999752 2221     12234679997  4999965  32 35666666 4455544311       11222


Q ss_pred             CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-H--
Q 016612          233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-L--  309 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~--  309 (386)
                      .+.++...+++...++.+..  +...++++.+.+++.+.-.      .....++.    ..+.++.|.++.+.+.. .  
T Consensus       327 ~~gnpl~~Aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~------~l~~~~~~----v~~vrG~Glm~giel~~~~~~  394 (461)
T PRK07482        327 YSGHPICAAAALANLDILER--ENLVGNAAEVGAYFRARLR------AAFGDHPL----VGEVRGVGMLAAVEFVADRDD  394 (461)
T ss_pred             CCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH------HHHhcCCC----EEEEeeceeEEEEEeccCCCc
Confidence            34566666666665554322  2344555555554443210      00111111    01236778888888731 1  


Q ss_pred             --------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHH
Q 016612          310 --------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDL  377 (386)
Q Consensus       310 --------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l  377 (386)
                              ....++...+..+|+.+..+.                          ..+.+|+.+.    .++++++++.+
T Consensus       395 ~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~--------------------------~~~~i~~~Ppl~it~~ei~~~~~~l  448 (461)
T PRK07482        395 RTPFDPALKIGPQVSAAALERGVIARAMP--------------------------HGDILGFAPPLVLTRAEADEIVAIA  448 (461)
T ss_pred             CCCCChhhHHHHHHHHHHHHCCcEEecCC--------------------------CCCEEEEeCCCCCCHHHHHHHHHHH
Confidence                    124567777777777543211                          0233777654    58888888888


Q ss_pred             HHHHhc
Q 016612          378 DKALRT  383 (386)
Q Consensus       378 ~~~l~~  383 (386)
                      .++|++
T Consensus       449 ~~~l~~  454 (461)
T PRK07482        449 KDAVDE  454 (461)
T ss_pred             HHHHHH
Confidence            888865

>PLN02452 phosphoserine transaminase

Probab=99.52  E-value=7.2e-13  Score=122.16  Aligned_cols=275  Identities=13%  Similarity=0.086  Sum_probs=174.0

Q ss_pred             chHHHHHHHHHhhcCCC---ceEEe-CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC---C
Q 016612           55 PTRDALESLLAKLDKAD---RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN---T  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~---~~i~~-~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~---~  126 (386)
                      .+.+++++.+.++++.+   +.+++ +|||.++. +++.++.+|+++++...++.+-.  +...++.+|...+...   .
T Consensus        52 ~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r--~~~~a~~~g~~~~~~~~~~~  129 (365)
T PLN02452         52 SIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKK--AAKEAKKYCKTNVIASGKDE  129 (365)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCCCcEEEecCCC
Confidence            36888999999999864   34444 56678887 45668889999887765554442  3466777776444331   1


Q ss_pred             -----CCHHHHHhhhCCCceEEEEeCCCCCCccc-ccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccc
Q 016612          127 -----CDLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSAT  199 (386)
Q Consensus       127 -----~d~~~l~~~~~~~~~~v~~~~~~nptG~~-~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~s  199 (386)
                           .++++++  .+++.+.|.+++....||.. .|++++.      ++++++|.+++.+..+ +..+++.|+  .|.+
T Consensus       130 ~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saq  199 (365)
T PLN02452        130 KYTKIPSVSEWE--LTPDAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQ  199 (365)
T ss_pred             CCCCCCChHHcC--CCCCCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccCcccCHHHcCEEE--Eecc
Confidence                 2444442  23578899999999999995 7777764      3899999999888764 334455544  6999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHh-----------hhhcCCCCCh-hhHHHHHhcCC------cHHHHHHHHHHHH
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKELYFL-----------QNAEGSGLAP-FDCWICLRGVK------TMALRVEKQQDNA  261 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~  261 (386)
                      |.+ ||+|  .|+++++++.+.+ ....           ......+.++ ...+++..+++      .+..+.++..+.+
T Consensus       200 K~l-GP~G--l~~v~vr~~~l~~-~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a  275 (365)
T PLN02452        200 KNV-GPSG--VTIVIIRKDLIGN-ARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKA  275 (365)
T ss_pred             ccc-CCCC--eEEEEEcHHHHhh-cccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999 6888  6888888654432 2110           0000011222 22222222222      3445555666677


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      +.+.+.+++...+   +.....          .......+++|.+++....++|+++++.+|+..-.|+...        
T Consensus       276 ~~l~~~l~~~~G~---y~~~~~----------~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~~--------  334 (365)
T PLN02452        276 DLLYDAIDESNGF---YVCPVE----------KSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRSV--------  334 (365)
T ss_pred             HHHHHHHHhCCCc---ccCCCC----------hHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCcccc--------
Confidence            7777777764321   111000          0001235788888776788999999999999877776411        


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhc
Q 016612          342 SHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~  383 (386)
                                      .+ +|+|+    ..++++.+++.+++.-++
T Consensus       335 ----------------gg-~R~s~yna~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        335 ----------------GG-MRASIYNAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             ----------------Cc-eEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence                            23 99997    358888888888877654

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.52  E-value=7.5e-13  Score=126.30  Aligned_cols=288  Identities=15%  Similarity=0.135  Sum_probs=164.5

Q ss_pred             CchHHHHHHHHHhhcCCC-----ceEEe-CcHHHHHHHHHHh---cCCCCEEEecCCCCCcHHHHHhhhccc------CC
Q 016612           54 NPTRDALESLLAKLDKAD-----RALCF-TSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK------TG  118 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~-----~~i~~-~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~------~g  118 (386)
                      ++...++.+.+.+....+     ..+++ +||++|+.+.+.+   .....+|+.-...|++.......+...      ++
T Consensus       105 ~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~  184 (464)
T PRK06938        105 TPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLG  184 (464)
T ss_pred             CHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCC
Confidence            455556666666654322     34454 5999998644332   233467777777776653221121100      00


Q ss_pred             ---cEEEEeCCC-----------------CHHHHHhhhC------CCceEEEEeCCCCCCccccc----HHHHHHHHHHc
Q 016612          119 ---VVVKRVNTC-----------------DLDEVASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAH  168 (386)
Q Consensus       119 ---~~~~~v~~~-----------------d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~  168 (386)
                         ..+..++..                 +.+.+++.+.      +++.+|+++......|.+.+    ++++.++|++|
T Consensus       185 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~  264 (464)
T PRK06938        185 ALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEA  264 (464)
T ss_pred             CCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc
Confidence               112233321                 2456777664      25899999988776777654    89999999999


Q ss_pred             CCEEEEeCCCCC----CCcc--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHH
Q 016612          169 GALLLVDNSIMS----PVLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       169 ~~~li~D~a~~~----~~~~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      |+++|.||++..    |.+.  ......+|+++.  +|.++|  |+.+|.++++++ + +.+.........+.++...++
T Consensus       265 giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~--gKglgg--G~PlsAv~~~~~-~-~~~~~~~~~~T~~gnpla~Aa  338 (464)
T PRK06938        265 GIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVL--SKAIGG--SLPLAVVVYREW-L-DTWQPGAHAGTFRGNQMAMAA  338 (464)
T ss_pred             CCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEe--eccccC--CCceEEEeehhH-h-hccCCCCCCCCCCcCHHHHHH
Confidence            999999999752    2211  122346799875  999864  466888887643 3 322111122223455666666


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--------------
Q 016612          243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------------  308 (386)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------------  308 (386)
                      ++..++.+..  +...++++.+.+++.+.-.  . +   .+.++.    ..+.++.|.++.+.+..              
T Consensus       339 a~a~L~~l~~--~~l~~~~~~~G~~l~~~L~--~-l---~~~~~~----i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~  406 (464)
T PRK06938        339 GSATLRYIKE--HRLAEHAAAMGERLREHLR--Q-L---QRDYPQ----LGDVRGRGLMLGVEIVDPQGEPDALGHPPAN  406 (464)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHHH--H-H---HHhCCC----eeeeeccceEEEEEeccCcccccccccCCcc
Confidence            6665554322  3445566555555543210  0 0   011110    11236778888888721              


Q ss_pred             HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhcC
Q 016612          309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       309 ~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~~  384 (386)
                      ......+.+.+..+|+.+.+++.                         ..+.+|+.+    +.++++++++.+.++|+++
T Consensus       407 ~~~~~~~~~~~~~~Gll~~~~g~-------------------------~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        407 GELASLIQRECLRRGLILELGGR-------------------------HGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             HHHHHHHHHHHHHCCeEEeecCC-------------------------CCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            12345677777777876543221                         123478775    4588888888888888753

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.52  E-value=8.6e-13  Score=125.01  Aligned_cols=279  Identities=11%  Similarity=0.059  Sum_probs=155.1

Q ss_pred             HHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHH----hc----CC-CCEEEecCCCCCcHHHHHhhhccc-------CC
Q 016612           57 RDALESLLAKLDKA--DRALCFTSGMAALAAVTH----LL----GT-GEEIVAGDDLYGGTDRLLSRVTPK-------TG  118 (386)
Q Consensus        57 ~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~----~~----~~-g~~Vlv~~~~~~~~~~~~~~~~~~-------~g  118 (386)
                      ..++.+.+.++++.  +...++++|++|+...+.    ..    .+ ..+|+.-+..|++.......+...       ++
T Consensus        90 ~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~  169 (427)
T TIGR00508        90 AIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYK  169 (427)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCccccccccc
Confidence            33444455555433  367788899998763322    11    12 356777777776643221111110       00


Q ss_pred             --c-EEEEeCC-----------CCHHHHHhhhC---CCceEEEEeCC-CCCCcccc----cHHHHHHHHHHcCCEEEEeC
Q 016612          119 --V-VVKRVNT-----------CDLDEVASAIG---PWTKLVWVESP-TNPRQQIC----DIRKIAEMAHAHGALLLVDN  176 (386)
Q Consensus       119 --~-~~~~v~~-----------~d~~~l~~~~~---~~~~~v~~~~~-~nptG~~~----~l~~i~~la~~~~~~li~D~  176 (386)
                        . ....++.           .|.+++++.+.   +++.+|+++.. ++..|...    .+++|.++|+++|+++|+||
T Consensus       170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DE  249 (427)
T TIGR00508       170 GYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADE  249 (427)
T ss_pred             ccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence              0 0111110           14566666664   46789999986 66555544    48999999999999999999


Q ss_pred             CCCC-CCcc-----CCCCCCccEEEeccccccccCCCc-eEEEEEEcChhHHHHHHHhh-----hhcCCCCChhhHHHHH
Q 016612          177 SIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFLQ-----NAEGSGLAPFDCWICL  244 (386)
Q Consensus       177 a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~-~~G~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  244 (386)
                      ++.. |...     .......|+++  ++|.++|  |+ .++.++++ +++.+.+....     .......++...+++.
T Consensus       250 v~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~g--G~~p~~a~~~~-~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~  324 (427)
T TIGR00508       250 IATGFGRTGKLFACEHAGVVPDILC--VGKALTG--GYMTLSATVTT-DKVAQTISSGEAGCFMHGPTFMGNPLACAVAE  324 (427)
T ss_pred             cccCCCcCCccchhhhcCCCCCEEE--echhhhc--CcccceEEEEc-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHH
Confidence            9742 2211     11234578776  6999854  43 35666665 55666554211     1112234566666665


Q ss_pred             hcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc
Q 016612          245 RGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  322 (386)
Q Consensus       245 ~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  322 (386)
                      ..++.+..  ..++..+..+.+.+.|++..   .  .+.+          ...++.|.++.+.+.+......+.+++...
T Consensus       325 a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~---~--~~~i----------~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~  389 (427)
T TIGR00508       325 ASLAILLEGEWQKQVSAIENQLKRELSPLR---K--NPVV----------KDVRVLGAIGVVEMYKPVNVEELQKKFVEQ  389 (427)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHhh---c--CCCE----------EeEeccccEEEEEECCccCHHHHHHHHHHC
Confidence            55543322  12333334444444444321   0  1111          122567899999886544456777777777


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      |+.+....                            ..+|+++.    .++++++++.+.++|++
T Consensus       390 Gv~~~~~~----------------------------~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       390 GVWIRPFG----------------------------KLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             CeEEEecC----------------------------CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            87653211                            23788765    47778888888877753

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.52  E-value=5.6e-13  Score=127.23  Aligned_cols=284  Identities=13%  Similarity=0.139  Sum_probs=165.6

Q ss_pred             CchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHHhc---------CCCCEEEecCCCCCcHH-HHHhhhccc-----
Q 016612           54 NPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHLL---------GTGEEIVAGDDLYGGTD-RLLSRVTPK-----  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~~~---------~~g~~Vlv~~~~~~~~~-~~~~~~~~~-----  116 (386)
                      ++...++.+.+.++..  .+...+++||++|+.+.+.+.         ..+.+|+.-...|++.. ..+ .+...     
T Consensus        89 ~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~-s~~~~~~~~~  167 (466)
T PRK07030         89 HEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAM-SVGDVALFTE  167 (466)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHH-hccCCccccc
Confidence            3456667777777653  346778899999986433321         12356777777776642 221 11110     


Q ss_pred             -CC---cEEEEeCCC-----------------CHHHHHhhhC---CCceEEEEeC-CCCCCccccc----HHHHHHHHHH
Q 016612          117 -TG---VVVKRVNTC-----------------DLDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHA  167 (386)
Q Consensus       117 -~g---~~~~~v~~~-----------------d~~~l~~~~~---~~~~~v~~~~-~~nptG~~~~----l~~i~~la~~  167 (386)
                       ++   ..+..++..                 +++++++.+.   +++.+|+++. .....|.+.+    +++|.++|++
T Consensus       168 ~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~  247 (466)
T PRK07030        168 TYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDR  247 (466)
T ss_pred             cCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHH
Confidence             00   012222211                 2455666664   6789999998 5666677654    8999999999


Q ss_pred             cCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHH-------hhhhcCC
Q 016612          168 HGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYF-------LQNAEGS  233 (386)
Q Consensus       168 ~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~-------~~~~~~~  233 (386)
                      ||+++|+||++. .|-..     ......+|+++.  +|.++|  | +.+|.++++ +++.+.+..       .......
T Consensus       248 ~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~--gKgl~g--G~~Pi~av~~~-~ei~~~~~~~~~~~~~~~h~~T~  322 (466)
T PRK07030        248 YGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCL--SKALTG--GYLPLAAVLTT-DTVYQAFYDDYPTLRAFLHSHSY  322 (466)
T ss_pred             cCCEEEEeehhhCcCccccchHHHhcCCCCCEEee--ehhccC--CcccceEEEec-HHHHHHHhcccccccccccCCCC
Confidence            999999999975 22221     223446799975  999865  4 357888876 556554421       1112222


Q ss_pred             CCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-H---
Q 016612          234 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-L---  309 (386)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~---  309 (386)
                      +.++...+++...++.+..  +...++++.+.+++.+.-.       .+..++.    ..+.++.|.++.+.+.. .   
T Consensus       323 ~gnpla~aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~-------~l~~~~~----v~~vrG~Gl~~gie~~~~~~~~  389 (466)
T PRK07030        323 TGNPLACAAALATLDIFEQ--DNVIENNRALARRMAEATA-------HLADHPH----VAEVRQTGMILAIEMVQDKASK  389 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH-------HHhcCCC----EEEeEeceeEEEEEeccCcccc
Confidence            4466666666665554432  3445666666665553210       1111111    11236778888888721 1   


Q ss_pred             -------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHH
Q 016612          310 -------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLD  378 (386)
Q Consensus       310 -------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~  378 (386)
                             ....++.+.+..+|+.+...                            .+.+|+.+    +.++++++++.+.
T Consensus       390 ~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------------------------g~~i~~~Ppl~it~~eid~~~~~l~  441 (466)
T PRK07030        390 TPYPWQERRGLKVYQHALERGALLRPL----------------------------GSVVYFLPPYVITPEQIDFLAEVAS  441 (466)
T ss_pred             ccCcchhHHHHHHHHHHHHCCeEEEec----------------------------CCEEEEECCccCCHHHHHHHHHHHH
Confidence                   12346777777777765321                            12377764    4588999999999


Q ss_pred             HHHhcC
Q 016612          379 KALRTG  384 (386)
Q Consensus       379 ~~l~~~  384 (386)
                      ++|+++
T Consensus       442 ~al~~~  447 (466)
T PRK07030        442 EGIDIA  447 (466)
T ss_pred             HHHHHH
Confidence            998764

>PRK05965 hypothetical protein; Provisional

Probab=99.51  E-value=2.3e-12  Score=123.09  Aligned_cols=286  Identities=12%  Similarity=0.138  Sum_probs=169.6

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---c----C-C-CCEEEecCCCCCcHHHHHhhhc------cc
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---L----G-T-GEEIVAGDDLYGGTDRLLSRVT------PK  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~----~-~-g~~Vlv~~~~~~~~~~~~~~~~------~~  116 (386)
                      ++...++.+.|.+++..  +..++++||++|+.+.+.+   .    . + ..+|+.-..+|++.......+.      ..
T Consensus        89 ~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~  168 (459)
T PRK05965         89 SEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRG  168 (459)
T ss_pred             CHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcc
Confidence            34556677777777642  3567778999998633321   1    1 2 3568877777766532111111      11


Q ss_pred             CCc---EEEEeCC---------CC--------HHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHc
Q 016612          117 TGV---VVKRVNT---------CD--------LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAH  168 (386)
Q Consensus       117 ~g~---~~~~v~~---------~d--------~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~  168 (386)
                      ++.   .+..++.         .|        ++++++.+.    +++.+|+++..+...|.+.+    +++|.++|++|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~  248 (459)
T PRK05965        169 FDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL  248 (459)
T ss_pred             cCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc
Confidence            111   1122221         12        246666664    57899999998887787764    89999999999


Q ss_pred             CCEEEEeCCCCC-C---Ccc--CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHH-------hhhhcCCC
Q 016612          169 GALLLVDNSIMS-P---VLS--RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYF-------LQNAEGSG  234 (386)
Q Consensus       169 ~~~li~D~a~~~-~---~~~--~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~-------~~~~~~~~  234 (386)
                      |+++|.||++.. |   .+.  ......+|+++.  +|.++|  | +.+|.++++ +++.+.+..       .......+
T Consensus       249 gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~g--G~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~  323 (459)
T PRK05965        249 GILFVADEVITGFGRTGPLFACEAEGVVPDLMTV--AKGLTS--GYVPMGAVLMS-DHVYQGIADGAGAAAPVGHGYTYS  323 (459)
T ss_pred             CCEEEEechhccCccCchhhhHhhcCCCCCeEEe--chhhcc--CCcceeEEEEc-HHHHHHHhccccccccccccCCCC
Confidence            999999999752 2   221  122346799975  999865  4 357888876 456554432       11222334


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-H----
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-L----  309 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~----  309 (386)
                      .++...++.+..++.+..  +...++++.+.+++.+.-.       .+..++.    ..+.++.|.++.+.+.. .    
T Consensus       324 gnpl~~Aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~l~-------~l~~~~~----v~~vrG~Gl~~gie~~~~~~~~~  390 (459)
T PRK05965        324 AHPVSAAVGLEVLRLYHE--GGLLANGQKAGPRFAAGLD-------ALRAHPL----VGDVRGRGLLGALELVADKATKT  390 (459)
T ss_pred             CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH-------hhccCCC----EEEEeecceEEEEEEeccccccC
Confidence            566666666665554322  3455666666666553210       1111111    12336788888888721 1    


Q ss_pred             ------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEE----eccCChHHHHHHHHH
Q 016612          310 ------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDK  379 (386)
Q Consensus       310 ------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis----~~~~~~~~~i~~l~~  379 (386)
                            ....++.+.+..+|+.+...                           +.+.||+.    ++.++++++++.+.+
T Consensus       391 ~~~~~~~~~~~i~~~~~~~Gll~~~~---------------------------g~~~i~~~PpL~it~~ei~~~~~~l~~  443 (459)
T PRK05965        391 PFDAALDPADRIFDRAYANGLVFRAF---------------------------GDGVLGFAPALCCTEGEFDLIFERTRK  443 (459)
T ss_pred             CCCchhHHHHHHHHHHHhCCeEEEec---------------------------CCcEEEEECCCcCCHHHHHHHHHHHHH
Confidence                  23566777777788765321                           13447887    456899999999998


Q ss_pred             HHhcC
Q 016612          380 ALRTG  384 (386)
Q Consensus       380 ~l~~~  384 (386)
                      +|+++
T Consensus       444 ~l~~~  448 (459)
T PRK05965        444 TLDDV  448 (459)
T ss_pred             HHHHH
Confidence            88653

>PRK06062 hypothetical protein; Provisional

Probab=99.51  E-value=3.6e-13  Score=128.22  Aligned_cols=283  Identities=16%  Similarity=0.171  Sum_probs=164.7

Q ss_pred             CCchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcHHHHHhhhcc----------cC
Q 016612           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP----------KT  117 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~----------~~  117 (386)
                      .++...++.+.|.++...  +...+++||++|..+.+.+   .....+|+.-...|++..........          ..
T Consensus        93 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~  172 (451)
T PRK06062         93 ANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRA  172 (451)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCC
Confidence            445667777778777643  4778889999998643332   23346777777667665322111110          01


Q ss_pred             CcEEEEeCC---------CC-------HHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEE
Q 016612          118 GVVVKRVNT---------CD-------LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLL  173 (386)
Q Consensus       118 g~~~~~v~~---------~d-------~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li  173 (386)
                      |+.....+.         .|       ++++++.+.    +++.+|+++......|.+.|    +++|.++|++||+++|
T Consensus       173 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI  252 (451)
T PRK06062        173 GVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLI  252 (451)
T ss_pred             CCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            111111111         12       566777663    46789999998888888877    9999999999999999


Q ss_pred             EeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCc-eEEEEEEcChhHHHHHHHh--hhhcCCCCChhhHHHHH
Q 016612          174 VDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICL  244 (386)
Q Consensus       174 ~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~-~~G~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  244 (386)
                      +||+++. |-..     ......+|+++  ++|.+++  |. .+|.+++++ ++.+.+...  ......+.++...++++
T Consensus       253 ~DEV~tGfGRtG~~~a~~~~gv~PDi~t--~gK~lgg--G~~Pigav~~~~-~i~~~~~~~~~~~~~T~~gnpl~~Aaa~  327 (451)
T PRK06062        253 ADEVMAGFGRTGKWFAIEHFGVVPDLIT--FAKGVNS--GYVPLGGVAISE-AIAATFADRPYPGGLTYSGHPLACAAAV  327 (451)
T ss_pred             eeccccCCCcCcHHHHHHhcCCCCCeee--echhhhc--CCcCcEEEEEcH-HHHHHhccCCCCCCCCCCCCHHHHHHHH
Confidence            9999862 2111     12234578775  6999975  32 356666664 566554321  11122344566666666


Q ss_pred             hcCCcHHHHHHHHHHHHHHHH-----HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-H---------
Q 016612          245 RGVKTMALRVEKQQDNAQKIA-----EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-L---------  309 (386)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~-----~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~---------  309 (386)
                      ..++.+..  +...++++.+.     +.|++...    ..+.+          .+.++.|.++.+.+.. .         
T Consensus       328 a~L~~l~~--~~l~~~~~~~G~~~l~~~L~~l~~----~~~~v----------~~vrG~Gl~~gve~~~~~~~~~~~~~~  391 (451)
T PRK06062        328 ATINAMEE--EGIVENAARIGAEVLGPGLRELAE----RHPSV----------GEVRGLGVFWALELVADRETREPLAPY  391 (451)
T ss_pred             HHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHh----cCCcE----------EeEeccccEEEEEEcccccccCCCccc
Confidence            66654422  22444444443     23332110    00111          1225667777777621 1         


Q ss_pred             ----HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHH
Q 016612          310 ----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKAL  381 (386)
Q Consensus       310 ----~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l  381 (386)
                          ....++.+.+...|+.....                            .+.+|+++.    .++++++++.+.++|
T Consensus       392 ~~~~~~~~~~~~~l~~~Gvl~~~~----------------------------~~~lrl~ppl~~t~~eid~~~~~l~~~l  443 (451)
T PRK06062        392 GASSAAMAAVKAACKERGLLPFVN----------------------------GNRIHVVPPCTVTEDEVREGLAILDAAL  443 (451)
T ss_pred             chhhHHHHHHHHHHHHCCcEEeec----------------------------CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence                13556777777777753211                            234888763    488888888888888


Q ss_pred             hcC
Q 016612          382 RTG  384 (386)
Q Consensus       382 ~~~  384 (386)
                      +++
T Consensus       444 ~~~  446 (451)
T PRK06062        444 AVA  446 (451)
T ss_pred             HHh
Confidence            764

>PRK06105 aminotransferase; Provisional

Probab=99.51  E-value=3.8e-12  Score=121.55  Aligned_cols=285  Identities=14%  Similarity=0.138  Sum_probs=167.2

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHhc-------C-C-CCEEEecCCCCCcHHHHHhhhcc------c
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLL-------G-T-GEEIVAGDDLYGGTDRLLSRVTP------K  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~~-------~-~-g~~Vlv~~~~~~~~~~~~~~~~~------~  116 (386)
                      ++...++.+.|.+++..  +...+++||++|+.+.+.+.       . + ..+|+.-+..|++.......+..      .
T Consensus        91 ~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~  170 (460)
T PRK06105         91 HGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRS  170 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccc
Confidence            35566788888887743  36777899999986443331       1 2 35677666666554211111110      1


Q ss_pred             CC---cEEEEeCCC------------------CHHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHH
Q 016612          117 TG---VVVKRVNTC------------------DLDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHA  167 (386)
Q Consensus       117 ~g---~~~~~v~~~------------------d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  167 (386)
                      ++   ..+..++..                  ..+++++.+.    +++.+|+++......|.+.+    +++|.++|++
T Consensus       171 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~  250 (460)
T PRK06105        171 FDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRK  250 (460)
T ss_pred             cCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            11   112222221                  1355666662    46889999998887788776    9999999999


Q ss_pred             cCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh-------hhhcCCC
Q 016612          168 HGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSG  234 (386)
Q Consensus       168 ~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-------~~~~~~~  234 (386)
                      ||+++|+||++. .|...     ......+|+++  ++|.++|. .+.+|.++++ +++.+.+...       ......+
T Consensus       251 ~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~--~gK~lggG-~~P~~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~  326 (460)
T PRK06105        251 YDILLVADEVICGFGRTGNMFGCETFGIKPDILV--MSKQLSSS-YQPLSAVLMN-EKVYDPIADESGKIGTFGHGFTAS  326 (460)
T ss_pred             cCCeEEEeccccCCCcCchhhhHHhcCCCCCeee--eecccccC-cccceEEEEc-HHHHHHHhcccccCcccccCCCCC
Confidence            999999999984 33322     12234578885  59999652 1346788776 4565544321       1122335


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC------
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS------  308 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~------  308 (386)
                      .++...++++..++.+..  +...++.+.+.+++.+.-.       .+..++.    ..+.++.|.++.+.+..      
T Consensus       327 gnpl~~aaa~a~L~~i~~--~~l~~~v~~~g~~l~~~L~-------~l~~~~~----v~~vrG~Gl~~gie~~~~~~~~~  393 (460)
T PRK06105        327 GHPVAAAVALENLAIIEE--RDLVGNAAERGARLQARLR-------ALADHPL----VGEVRGVGLIAAVELVADKATKT  393 (460)
T ss_pred             CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH-------HhhcCCC----eEEEEecceEEEEEEecCcccCC
Confidence            666666666666654432  2344555555555543210       0111111    11236778888887721      


Q ss_pred             -----HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHH
Q 016612          309 -----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDK  379 (386)
Q Consensus       309 -----~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~  379 (386)
                           ......+.+.+...|+.+.+.                            .+.+|+++    +.++++++++.+.+
T Consensus       394 ~~~~~~~~a~~i~~~~~~~Gvl~~~~----------------------------g~~i~l~Ppl~it~~eid~~~~~l~~  445 (460)
T PRK06105        394 PFEPPGKVGARANAAAHEHGVISRAM----------------------------GDTLAFCPPLIITAAQVDEMVDRFGR  445 (460)
T ss_pred             CCCchhHHHHHHHHHHHHCCeEEEec----------------------------CCEEEEECCCccCHHHHHHHHHHHHH
Confidence                 112356777777777765431                            12378775    45888999999988


Q ss_pred             HHhc
Q 016612          380 ALRT  383 (386)
Q Consensus       380 ~l~~  383 (386)
                      +|++
T Consensus       446 ~l~~  449 (460)
T PRK06105        446 ALDD  449 (460)
T ss_pred             HHHH
Confidence            8865

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.51  E-value=1.8e-12  Score=111.89  Aligned_cols=284  Identities=18%  Similarity=0.231  Sum_probs=177.6

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhc-------C--C-CC-EEEecCCC-CCcHHHHHh-----hhcccCC
Q 016612           56 TRDALESLLAKLDKADRALCFTSGMAALAAVTHLL-------G--T-GE-EIVAGDDL-YGGTDRLLS-----RVTPKTG  118 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~-------~--~-g~-~Vlv~~~~-~~~~~~~~~-----~~~~~~g  118 (386)
                      ...+.++.+.+++|.+..+..++|.+|...+..+.       +  | .. .++..... |+-+..++-     ..-+.+|
T Consensus       102 ~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fg  181 (427)
T KOG1402|consen  102 VLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFG  181 (427)
T ss_pred             hHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccC
Confidence            44567777888889999999999998886332221       1  3 22 33333333 332221100     0011122


Q ss_pred             ----cEEEEeCCCCHHHHHhhhC-CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC----CCcc-
Q 016612          119 ----VVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS----PVLS-  184 (386)
Q Consensus       119 ----~~~~~v~~~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~----~~~~-  184 (386)
                          ..+..++..|.++|+..++ ++.++++++..+-..|.+.|    ++++.++|.+|++++|.||+|..    |.+. 
T Consensus       182 p~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la  261 (427)
T KOG1402|consen  182 PFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLA  261 (427)
T ss_pred             CCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEE
Confidence                1255667779999999987 68899999999999999975    99999999999999999999863    2222 


Q ss_pred             -CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHH
Q 016612          185 -RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK  263 (386)
Q Consensus       185 -~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (386)
                       +......|+++.  .|.++|.- +....+.++ ++++..+........-+-++..++...++++.+.+  +.+.+++..
T Consensus       262 ~d~env~PDivil--gKalSGG~-~Pvsavl~~-~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e--ekL~era~~  335 (427)
T KOG1402|consen  262 CDYENVRPDIVIL--GKALSGGV-YPVSAVLAD-DDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE--EKLVERAAK  335 (427)
T ss_pred             eehhhcCCCeEEE--eccccCCe-eeeEEEEec-HHHHhccCCCccccccCCChHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence             223345788874  89887622 234445544 56665555555555556677777777676664433  566677776


Q ss_pred             HHHHHhhCCCcceEecCCC-CCCCchhhhhhccCCCCceEEEEeC----CHHhHHHHHhhcCcceeccCCCCcccccccc
Q 016612          264 IAEFLASHPRVKKVNYAGL-PEHPGHELHYSQAKGAGSVLSFLTG----SLALSKHVVETTKYFSITVSFGSVKSLISMP  338 (386)
Q Consensus       264 l~~~l~~~~~~~~~~~~~l-~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p  338 (386)
                      +...+...-.       .| ...|+   +.+.-+++|-+..+.+.    +...+..++-.++++|+...+-+        
T Consensus       336 lG~~l~~~L~-------~l~~~~p~---~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH--------  397 (427)
T KOG1402|consen  336 LGEILRDQLN-------KLQKKFPH---VVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTH--------  397 (427)
T ss_pred             HHHHHHHHHH-------hccccccc---hhheeeccceEEEEEeccccccchhHHHHHHcccccccccCCCC--------
Confidence            6665543210       01 11111   11233677878887763    34567788888888887543311        


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHh
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALR  382 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~  382 (386)
                                         .+.||+...    .++.++-++.++.++.
T Consensus       398 -------------------~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  398 -------------------GNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             -------------------CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence                               234888764    4777777777776653

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.51  E-value=6.6e-13  Score=126.70  Aligned_cols=285  Identities=14%  Similarity=0.113  Sum_probs=164.5

Q ss_pred             CchHHHHHHHHHhhcCC-------CceEEeCcHHHHHHHHHHh---c------CCCCEEEecCCCCCcHHHHHhhhccc-
Q 016612           54 NPTRDALESLLAKLDKA-------DRALCFTSGMAALAAVTHL---L------GTGEEIVAGDDLYGGTDRLLSRVTPK-  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~-------~~~i~~~~gt~al~~~~~~---~------~~g~~Vlv~~~~~~~~~~~~~~~~~~-  116 (386)
                      ++...++.+.+.+.+..       +...+++||++|+.+.+.+   .      ....+|+.-...|++........... 
T Consensus       106 ~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~  185 (472)
T PRK08742        106 HEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIP  185 (472)
T ss_pred             CHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCc
Confidence            34566677777776532       3677889999998643322   1      11357887777776653211111100 


Q ss_pred             -----CC---cEEEEeCCC-----------------CHHHHHhhhC---CCceEEEEeC-CCCCCccccc----HHHHHH
Q 016612          117 -----TG---VVVKRVNTC-----------------DLDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAE  163 (386)
Q Consensus       117 -----~g---~~~~~v~~~-----------------d~~~l~~~~~---~~~~~v~~~~-~~nptG~~~~----l~~i~~  163 (386)
                           ++   ..+..++..                 +++.+++.+.   +++.+|+++. .....|.+.+    ++++.+
T Consensus       186 ~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~  265 (472)
T PRK08742        186 LYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARE  265 (472)
T ss_pred             ccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHH
Confidence                 00   012222221                 2455666653   5788999998 5666677653    899999


Q ss_pred             HHHHcCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHh------hhh
Q 016612          164 MAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL------QNA  230 (386)
Q Consensus       164 la~~~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~------~~~  230 (386)
                      +|++||+++|.||++. .|-..     ......+|+++.  +|.++|  | +.+|.++++ +++.+.+...      ...
T Consensus       266 lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~--gKgl~g--G~~Plaav~~~-~ei~~~~~~~~~~~~~~h~  340 (472)
T PRK08742        266 LCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCL--SKGLTG--GFLPLSAVLAT-QQLYDAFLDDSRERAFLHS  340 (472)
T ss_pred             HHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEE--cccccC--CCCCcceeecc-HHHHHHhhccCccCccCcC
Confidence            9999999999999975 22221     122346799875  999965  3 236777776 5565544211      111


Q ss_pred             cCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-H
Q 016612          231 EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-L  309 (386)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~  309 (386)
                      ...+.++...++....++.+..  +...++++.+.+++++...       .+..++.    ..+.++.|.++.+.+.. .
T Consensus       341 ~T~~gnpl~~Aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~~~-------~~~~~~~----i~dvRG~Gl~~giel~~~~  407 (472)
T PRK08742        341 HSYTGNPLACAAALATLDIFAD--DDVIARNQPTAARMTQLAA-------QIGEHPH----VADVRQAGMVVAFELTRGG  407 (472)
T ss_pred             CCCCccHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHH-------HHhcCCC----eeeEeccceEEEEEeccCc
Confidence            2223456666666655553322  3445566666665553211       1111111    12236788899988721 1


Q ss_pred             ----------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHH
Q 016612          310 ----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLIS  375 (386)
Q Consensus       310 ----------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~  375 (386)
                                ....++.+.+..+|+.+...                            .+.||+.+.    .++++++++
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------g~vi~~~PpL~it~~ei~~~~~  459 (472)
T PRK08742        408 NKRTPFPPAARVGLHAYRAALARGVVLRPL----------------------------GDVLYWMPPYCVDEAQLALLAD  459 (472)
T ss_pred             cccccCCchhHHHHHHHHHHHHCCeEEEec----------------------------CCEEEEECCCCCCHHHHHHHHH
Confidence                      12345667777777765321                            123777764    588999999


Q ss_pred             HHHHHHhcC
Q 016612          376 DLDKALRTG  384 (386)
Q Consensus       376 ~l~~~l~~~  384 (386)
                      .|.++|+++
T Consensus       460 ~l~~~l~~~  468 (472)
T PRK08742        460 TTRHAIDEA  468 (472)
T ss_pred             HHHHHHHHH
Confidence            999998764

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.50  E-value=5.2e-12  Score=119.91  Aligned_cols=285  Identities=15%  Similarity=0.148  Sum_probs=162.4

Q ss_pred             chHHHHHHHHHhhcC-CCceEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcHHHHHhhhcc----------cCC--
Q 016612           55 PTRDALESLLAKLDK-ADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP----------KTG--  118 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g-~~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~----------~~g--  118 (386)
                      +...++.+.+.+... .+...+++||++|+.+.+.+   .....+|+.-...|++..........          ..+  
T Consensus        93 ~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~  172 (428)
T PRK12389         93 ELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVP  172 (428)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCC
Confidence            344555555555543 45778889999998644332   33346777767667664322111110          011  


Q ss_pred             ----cEEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCC---Cc-
Q 016612          119 ----VVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP---VL-  183 (386)
Q Consensus       119 ----~~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~---~~-  183 (386)
                          ..+..++..|++.+++.+.   +++.+|+++......|.+.|    +++|.++|+++|+++|+||++...   .. 
T Consensus       173 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~  252 (428)
T PRK12389        173 KSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGG  252 (428)
T ss_pred             CcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcch
Confidence                1344556668899988874   56889999999888888887    999999999999999999998632   11 


Q ss_pred             -cCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh---hhhcCCCCChhhHHHHHhcCCcHHH--HHHHH
Q 016612          184 -SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQ  257 (386)
Q Consensus       184 -~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  257 (386)
                       .......+|++  +++|.+++  |+.+|.++++ +++.+.+...   ......+.++...++.+..++.+..  ..++.
T Consensus       253 a~~~~gv~PDiv--t~gK~lgg--G~Pi~av~~~-~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~  327 (428)
T PRK12389        253 AQDLLGVEPDLT--ALGKIIGG--GLPIGAYGGR-KDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKL  327 (428)
T ss_pred             hhHHhCCCCCee--eechhhcC--CCceeEEeEH-HHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHH
Confidence             11123457886  56999965  4557777776 5566654321   1112235566666666665554322  12223


Q ss_pred             HHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-------------CHHhHHHHHhhcCccee
Q 016612          258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTKYFSI  324 (386)
Q Consensus       258 ~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~gi  324 (386)
                      .+..+.+.+.|++..          ..++.   .....++ ++++.+.+.             +......+.+.+..+|+
T Consensus       328 ~~~g~~l~~~L~~l~----------~~~~~---~~~v~r~-~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  393 (428)
T PRK12389        328 DRLGAMLEEGILEAA----------EKHGI---TITINRL-KGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGI  393 (428)
T ss_pred             HHHHHHHHHHHHHHH----------HhCCC---CEEEEec-CcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCc
Confidence            333333333333210          00000   0000022 235555542             11235677777777787


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      .+.+..... +                        .+.+.++.++++++++.+.++|++
T Consensus       394 ~~~~~~~~~-~------------------------~~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        394 NLAPSKYEA-W------------------------FLTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             EeecCCCCC-e------------------------eecCCCCHHHHHHHHHHHHHHHHh
Confidence            654421100 0                        022334568899999999999875

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.50  E-value=1.1e-12  Score=121.70  Aligned_cols=212  Identities=20%  Similarity=0.245  Sum_probs=140.5

Q ss_pred             hHHHHHHHHHhhcCCC---------ceEEeCcHHHHH-HHHHHh----c----CCC------CEEEecCCCCCcHHHHHh
Q 016612           56 TRDALESLLAKLDKAD---------RALCFTSGMAAL-AAVTHL----L----GTG------EEIVAGDDLYGGTDRLLS  111 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---------~~i~~~~gt~al-~~~~~~----~----~~g------~~Vlv~~~~~~~~~~~~~  111 (386)
                      +-.++.+++++++|.+         ..+++++||+++ .++.+.    .    ..|      -.|++++..|.+..    
T Consensus        80 ~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~----  155 (373)
T PF00282_consen   80 IEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIE----  155 (373)
T ss_dssp             HHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHH----
T ss_pred             chHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHH----
Confidence            4556677888888876         378889999775 444332    1    112      25678888898885    


Q ss_pred             hhcccCCcEEEEeCCC-----CHHHHHhhhCC---C---ceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCC
Q 016612          112 RVTPKTGVVVKRVNTC-----DLDEVASAIGP---W---TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       112 ~~~~~~g~~~~~v~~~-----d~~~l~~~~~~---~---~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      +.+...|+.++.|+.+     |+++|++.+..   +   +-+|+.+..+..+|.+.|+++|.++|+++++++++|++++.
T Consensus       156 Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg  235 (373)
T PF00282_consen  156 KAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGG  235 (373)
T ss_dssp             HHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGG
T ss_pred             HhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccc
Confidence            6677888888888865     78888887751   2   33677788899999999999999999999999999999986


Q ss_pred             CCccCC----CC---CCccEEEeccccccccCCCceEEEEEEcChhHHHH-H----HHhhhh----------------cC
Q 016612          181 PVLSRP----LE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-L----YFLQNA----------------EG  232 (386)
Q Consensus       181 ~~~~~~----~~---~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~-~----~~~~~~----------------~~  232 (386)
                      ..+..+    ..   ..+|-++.++|||++.|.+  +|+++.+++..... +    ..+...                .+
T Consensus       236 ~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~--~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~S  313 (373)
T PF00282_consen  236 SALLSPEYRHLLFGIERADSITIDPHKWLGVPYG--CGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGS  313 (373)
T ss_dssp             GGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS---EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSS
T ss_pred             cccccccccccccccccccccccchhhhhcCCcc--ceeEEeecccchHHHhccChhhhccccccccccccccccccccc
Confidence            443211    11   2579999999999988776  89999988754331 1    111100                00


Q ss_pred             CCCChhhHHHHH--hcCCcHHHHHHHHHHHHHHHHHHHhhCCC
Q 016612          233 SGLAPFDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       233 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      ........|+.+  .+.+.+..++++..+.++.+.+.+++.+.
T Consensus       314 R~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~  356 (373)
T PF00282_consen  314 RRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPR  356 (373)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             ccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            011123334443  34556778888888999999999998874

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.49  E-value=1.6e-12  Score=123.85  Aligned_cols=284  Identities=15%  Similarity=0.147  Sum_probs=160.2

Q ss_pred             chHHHHHHHHHhhc-CCCceEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcHHHH-Hhhh---------cccCCc-
Q 016612           55 PTRDALESLLAKLD-KADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRL-LSRV---------TPKTGV-  119 (386)
Q Consensus        55 ~~~~~l~~~l~~~~-g~~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~~~~-~~~~---------~~~~g~-  119 (386)
                      +...++.+.+.+.. +.+...+++||++|....+.+   ....++|+.-...|++.... +...         ....|. 
T Consensus       139 ~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~  218 (474)
T PLN02482        139 LLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVP  218 (474)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCC
Confidence            44556666676665 345788889999998643332   33446788777777775311 1000         001111 


Q ss_pred             -----EEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          120 -----VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       120 -----~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                           .+..++..|++++++.+.   +++.+|+++......|.+.|    +++|.++|++||+++|+||++. |...   
T Consensus       219 ~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~  297 (474)
T PLN02482        219 KAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYG  297 (474)
T ss_pred             CCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcc
Confidence                 234455668899988875   46889999988888888875    7799999999999999999984 3211   


Q ss_pred             ---CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh---hhcCCCCChhhHHHHHhcCCcHH--HHHHH
Q 016612          185 ---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTMA--LRVEK  256 (386)
Q Consensus       185 ---~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  256 (386)
                         ......+|++  +++|.++|  |+-+|.++++ +++.+.+....   .....+.++....+.+..++.+.  ...++
T Consensus       298 ga~~~~gv~PDi~--t~gK~lgg--G~Pigav~g~-~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~  372 (474)
T PLN02482        298 GAQEYFGITPDLT--TLGKVIGG--GLPVGAYGGR-REIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEY  372 (474)
T ss_pred             hHhHHhCCCCCEE--EecchhhC--CCceEEEEEc-HHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHH
Confidence               1122356876  46999964  4557777775 56666553211   11112234555555544444332  12233


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-------------CHHhHHHHHhhcCcce
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTKYFS  323 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~g  323 (386)
                      ..+..+.+.+.|++...  +.   +++..      .   ...++++.+.+.             +......+.+.+..+|
T Consensus       373 ~~~~g~~l~~~L~~l~~--~~---g~~~~------~---~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~G  438 (474)
T PLN02482        373 LDKITKKLIQGILEAGK--KA---GHEMC------G---GYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEG  438 (474)
T ss_pred             HHHHHHHHHHHHHHHHH--hc---CCCEE------E---cccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCC
Confidence            33444444444443210  00   00000      0   011234544431             2223456777777788


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      +.+.+...      +                   .+++.+..+.+++++.++.+.+++++
T Consensus       439 v~~~~~~~------~-------------------~~~psl~ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        439 VYLAPSQF------E-------------------AGFTSLAHTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             eEEeccCC------C-------------------CCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            86543211      0                   01122344568899999999988865

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.47  E-value=4.4e-12  Score=121.03  Aligned_cols=287  Identities=16%  Similarity=0.193  Sum_probs=162.1

Q ss_pred             CCchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcH-HHHHhhhccc------CC--
Q 016612           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGT-DRLLSRVTPK------TG--  118 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~-~~~~~~~~~~------~g--  118 (386)
                      .++...++.+.|+++++.  +...+++||++|+.+++.+   .....+|+.-...|++. ...+ .+...      ++  
T Consensus       111 ~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~~  189 (459)
T PRK06082        111 TNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAI-SVGGEACFRQGMGPL  189 (459)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHH-hhcCCcccccCCCCC
Confidence            445677888888888753  3677788999998754443   23346677666666554 2222 11100      00  


Q ss_pred             -cEEEEeCC--------CC--------HHHHHhhhC--CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeC
Q 016612          119 -VVVKRVNT--------CD--------LDEVASAIG--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDN  176 (386)
Q Consensus       119 -~~~~~v~~--------~d--------~~~l~~~~~--~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~  176 (386)
                       ..+..++.        .+        ++++++.+.  +++.+|+++...+..+.+.|   +++|.++|++||+++|+||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DE  269 (459)
T PRK06082        190 MAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDE  269 (459)
T ss_pred             CCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence             01122221        11        245676664  46889999988876333345   8999999999999999999


Q ss_pred             CCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH
Q 016612          177 SIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM  250 (386)
Q Consensus       177 a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (386)
                      +++. |-..     ......+|+++  ++|.+++ +.+-+|.+++++ ++.............+.++...++++..++.+
T Consensus       270 V~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~g-G~~P~~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l  345 (459)
T PRK06082        270 IPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGG-GLVPIAAMITKD-KYNTAAQISLGHYTHEKSPLGCAAALATIEVI  345 (459)
T ss_pred             hhhCCCccchhhHhHhhCCCCCEEE--ecccccC-CCCcceEEEEcH-HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            9762 2221     11234578886  6999965 213467777764 45432211001123345666666666655544


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--------HHhHHHHHhhcCcc
Q 016612          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------LALSKHVVETTKYF  322 (386)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~  322 (386)
                      ..  +...++++.+.+++.+.-.  . +   ...++.    ..+.++.|.++.+.+..        ......+...+..+
T Consensus       346 ~~--~~l~~~~~~~g~~l~~~L~--~-l---~~~~~~----i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~  413 (459)
T PRK06082        346 EQ--EGLLEKVKADSQFMRERLL--E-M---KAKYPL----IGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNN  413 (459)
T ss_pred             Hh--cCHHHHHHHHHHHHHHHHH--H-H---HhhCCC----eeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhC
Confidence            22  2334444444444433210  0 0   001110    11236778888888731        12245666666677


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhc
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~  383 (386)
                      |+.....                           ..+.+|+++    +.+++++.++.++++|++
T Consensus       414 Gvl~~~~---------------------------~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~  451 (459)
T PRK06082        414 GLSFKVS---------------------------QGNVIQLSPPLIITREELTQALAILEEAIAK  451 (459)
T ss_pred             CCEEEec---------------------------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            7754321                           124488875    458888888888888865

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.47  E-value=2.9e-12  Score=122.44  Aligned_cols=286  Identities=12%  Similarity=0.150  Sum_probs=162.8

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHhc--------CC-CCEEEecCCCCCcHHHHHhhhccc------
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTPK------  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~~--------~~-g~~Vlv~~~~~~~~~~~~~~~~~~------  116 (386)
                      ++...++.+.|.+++..  +...+++||++|+.+.+.+.        .+ ..+|+.-...|++.......+...      
T Consensus        98 ~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~  177 (460)
T PRK06916         98 NVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQV  177 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccc
Confidence            34555666677776643  46788899999986433321        12 357787777776643211111110      


Q ss_pred             CC---cEEEEeCCC-----------------CHHHHHhhhC---CCceEEEEeC-CCCCCccccc----HHHHHHHHHHc
Q 016612          117 TG---VVVKRVNTC-----------------DLDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAH  168 (386)
Q Consensus       117 ~g---~~~~~v~~~-----------------d~~~l~~~~~---~~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~  168 (386)
                      ++   ..+..++..                 +++++++.++   +++.+|+++. +....|.+.+    +++|.++|+++
T Consensus       178 ~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~  257 (460)
T PRK06916        178 YSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKY  257 (460)
T ss_pred             cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHc
Confidence            00   011222110                 2455666664   6789999998 5776777753    89999999999


Q ss_pred             CCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHH-------hhhhcCCC
Q 016612          169 GALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYF-------LQNAEGSG  234 (386)
Q Consensus       169 ~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~-------~~~~~~~~  234 (386)
                      |+++|+||++.. |-..     ......+|+++  ++|.++|  | +.+|.++++ +++.+.+..       .......+
T Consensus       258 g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~g--G~~Pi~av~~~-~ei~~~~~~~~~~~~~~~~~~T~~  332 (460)
T PRK06916        258 NVLFITDEVATGFGRTGKMFACEHENVTPDIMT--AGKGLTG--GYLPIAITVTT-DEIYNAFYGDYEEQKTFFHGHSYT  332 (460)
T ss_pred             CCEEEeechhhCCCcCchhhHHHhcCCCCCeee--eehhhhc--Cccccceeeec-HHHHHHhhccccccCccccCCCCC
Confidence            999999999742 2221     12234578886  5999864  4 347777776 456554421       11111223


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----  309 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----  309 (386)
                      .++....+++..++.+..  +.+.++++.+.+++.+.-.       .+..++.    ..+.++.|.++.+.+...     
T Consensus       333 gnpl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~l~-------~l~~~~~----v~~vrG~Glm~giel~~~~~~~~  399 (460)
T PRK06916        333 GNPLGCAVALANLELYEK--TNLIEQVARKTEYVATQLE-------DLFALKH----VGDIRQLGLMVGIELVKNKETKE  399 (460)
T ss_pred             CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH-------HhhcCCC----eEEeecCCceeeEEeeccccccc
Confidence            456666665555543322  2234444444444433110       0111111    112367788888877321     


Q ss_pred             ------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHH
Q 016612          310 ------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDK  379 (386)
Q Consensus       310 ------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~  379 (386)
                            ....++.+.+..+|+.+.+.+                            +.+|+.+    +.++++++++.+.+
T Consensus       400 ~~~~~~~~~~~i~~~~~~~Gvl~~~~g----------------------------~~l~~~Ppl~it~~~id~~~~~l~~  451 (460)
T PRK06916        400 PFEWTERVGVQVCKRSRELGMLTRPLG----------------------------NTIVFMPPLASTIDELDEMLRILYK  451 (460)
T ss_pred             CCCchhhHHHHHHHHHHHCCeEEEecC----------------------------CEEEEeCCcccCHHHHHHHHHHHHH
Confidence                  123567777777887654311                            2367664    45889999999999


Q ss_pred             HHhcCC
Q 016612          380 ALRTGP  385 (386)
Q Consensus       380 ~l~~~~  385 (386)
                      +|++++
T Consensus       452 ~l~~~~  457 (460)
T PRK06916        452 AISDVT  457 (460)
T ss_pred             HHHhhc
Confidence            987753

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.46  E-value=1.4e-12  Score=117.34  Aligned_cols=181  Identities=24%  Similarity=0.236  Sum_probs=130.5

Q ss_pred             HHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhcCCCCEEEecC-----CCCCcHHHHHhhhcccCCcEEEEeCCC---C
Q 016612           57 RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGD-----DLYGGTDRLLSRVTPKTGVVVKRVNTC---D  128 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~~~g~~Vlv~~-----~~~~~~~~~~~~~~~~~g~~~~~v~~~---d  128 (386)
                      ...+.+.++..+|.+++.++++.+.|+.++...+.++.+|+++.     +.+++.    ..+.+..|.+++++...   .
T Consensus        70 ~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~gg~~~v----~d~~~~aG~~l~EvG~tn~t~  145 (395)
T COG1921          70 LTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVEGGAFRV----PDIIRLAGAKLVEVGTTNRTH  145 (395)
T ss_pred             HHHHHHHHhcccchhheeeECCcHHHHHHHHhhhccCCeEEEEccccccCCCCCh----hHHHHHcCCEEEEecccCcCC
Confidence            44667777788888899999999988876555444455555433     345555    46778999999999864   7


Q ss_pred             HHHHHhhhCCCceEEEEeCCCCCCccc--ccHHHHHHHHHHcCCEEEEeCCCCCCC-----ccCCCCCCccEEEeccccc
Q 016612          129 LDEVASAIGPWTKLVWVESPTNPRQQI--CDIRKIAEMAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKF  201 (386)
Q Consensus       129 ~~~l~~~~~~~~~~v~~~~~~nptG~~--~~l~~i~~la~~~~~~li~D~a~~~~~-----~~~~~~~~~di~~~S~sK~  201 (386)
                      ..+++.++.+++++++-.+.+|. |..  .+.+++.++||++|+++++|.+.+...     .......|+|++++|..|.
T Consensus       146 ~~d~~~AIne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKl  224 (395)
T COG1921         146 LKDYELAINENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKL  224 (395)
T ss_pred             HHHHHHHhccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchh
Confidence            89999999999999988877774 555  478899999999999999999976432     2234467999999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhc
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (386)
                      ++||.   .|+++++++ +..+++......+.-......+.+.++
T Consensus       225 lgGPq---aGii~GkKe-lI~~lq~~~l~Ralrv~K~tla~l~~a  265 (395)
T COG1921         225 LGGPQ---AGIIVGKKE-LIEKLQSHPLKRALRVDKETLAALEAA  265 (395)
T ss_pred             cCCCc---cceEechHH-HHHHHHhhhhhhhhhcCcHhHHHHHHH
Confidence            98875   799999855 545454433333333333334333333

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.46  E-value=4.3e-12  Score=121.08  Aligned_cols=288  Identities=17%  Similarity=0.170  Sum_probs=161.1

Q ss_pred             CCchHHHHHHHHHhhcCCC----ceEEe-CcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhhccc------C-
Q 016612           53 GNPTRDALESLLAKLDKAD----RALCF-TSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPK------T-  117 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~----~~i~~-~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~~------~-  117 (386)
                      .++...++.+.+.+.++..    ..+++ +||++|+.+.+.   .....++|+.-...|++.......+...      + 
T Consensus        99 ~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~  178 (459)
T PRK06931         99 TTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVN  178 (459)
T ss_pred             CCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCC
Confidence            3456667777777776422    23344 799999864333   2334567887777776654332221110      0 


Q ss_pred             --CcEEEEeCCC-------------CHHHH----HhhhC------CCceEEEEeCCCCCCccccc----HHHHHHHHHHc
Q 016612          118 --GVVVKRVNTC-------------DLDEV----ASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAH  168 (386)
Q Consensus       118 --g~~~~~v~~~-------------d~~~l----~~~~~------~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~  168 (386)
                        ...+..++..             +.+.+    ++.+.      +++.+|+++......|.+.+    ++++.++|++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~  258 (459)
T PRK06931        179 GLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKH  258 (459)
T ss_pred             CCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc
Confidence              1112233321             12222    23332      35889999988777777754    89999999999


Q ss_pred             CCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHH
Q 016612          169 GALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       169 ~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      |+++|.||++.. |-..     ......+|+++.  +|.+++  |+.+|.++++ +++ +.+.........+.++...++
T Consensus       259 g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~--gK~l~g--G~Pi~av~~~-~~~-~~~~~~~~~~T~~gnpla~aa  332 (459)
T PRK06931        259 GILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVM--SKAVGG--GLPLAVLGIK-KEF-DAWQPGGHTGTFRGNQLAMAT  332 (459)
T ss_pred             CCEEEEecchhcCCcCchHHHhhhcCCCCCEEEe--cccccC--CcceeeeeeH-HHH-hhccCCCCCCCCCCCHHHHHH
Confidence            999999999752 2111     122346788864  999965  4567777765 333 322211222223456666666


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--------------
Q 016612          243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------------  308 (386)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------------  308 (386)
                      ++..++.+..  +...++++.+.+++.+.-.  . +   .+.++.    ..+.++.|.++.+.+..              
T Consensus       333 ala~L~~l~~--~~l~~~~~~~G~~l~~~L~--~-l---~~~~~~----i~~vrG~Glm~giel~~~~~~~~~~~~~~~~  400 (459)
T PRK06931        333 GLTTLKILKE--ENLAQNAAERGEWLKAQLA--E-L---QKRYPC----IGNVRGRGLMIGIEIVDERQPADAMGSYPAD  400 (459)
T ss_pred             HHHHHHHHHh--CCHHHHHHHHHHHHHHHHH--H-H---HHhCCC----eEeEecCceEEEEEEccCcccccccccCCcc
Confidence            6555543322  2344555555544442210  0 0   011110    12236788888888721              


Q ss_pred             HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       309 ~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      ......+.+.+...|+.+.+.+.                         ..+.+|+.+.    .++++++++.+.++|++
T Consensus       401 ~~~~~~~~~~~~~~Gvl~~~~~~-------------------------~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  454 (459)
T PRK06931        401 GELAAAIQKACFENGLLLERGGR-------------------------NGNVVRLLPPLLITQAECEEFIDRFEQALLA  454 (459)
T ss_pred             HHHHHHHHHHHHHCCcEEeecCC-------------------------CCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence            12345677777777776543211                         1344887765    48888888888888765

>PRK07036 hypothetical protein; Provisional

Probab=99.46  E-value=1.9e-11  Score=116.95  Aligned_cols=283  Identities=17%  Similarity=0.218  Sum_probs=161.2

Q ss_pred             chHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---c----C-C-CCEEEecCCCCCcHHHHHhhhcccC------
Q 016612           55 PTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---L----G-T-GEEIVAGDDLYGGTDRLLSRVTPKT------  117 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~----~-~-g~~Vlv~~~~~~~~~~~~~~~~~~~------  117 (386)
                      +...++.+.+.+....  +...+++||++|+.+.+.+   .    . + ..+|+.-+..|++.......+....      
T Consensus        95 ~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~  174 (466)
T PRK07036         95 APAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEF  174 (466)
T ss_pred             HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccc
Confidence            4455566666665532  3677888999998643332   1    1 1 3578877777766432211111100      


Q ss_pred             C---cEEEEeCCCC-----------------HHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHcC
Q 016612          118 G---VVVKRVNTCD-----------------LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHG  169 (386)
Q Consensus       118 g---~~~~~v~~~d-----------------~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~  169 (386)
                      +   ..+..++..+                 .+.+++.+.    +++.+|+++......|.+.|    +++|.++|++||
T Consensus       175 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g  254 (466)
T PRK07036        175 DYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYD  254 (466)
T ss_pred             cCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcC
Confidence            0   0122222111                 233444442    57889999998887888876    899999999999


Q ss_pred             CEEEEeCCCC-CCCcc------CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHh-------hhhcCCC
Q 016612          170 ALLLVDNSIM-SPVLS------RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL-------QNAEGSG  234 (386)
Q Consensus       170 ~~li~D~a~~-~~~~~------~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~-------~~~~~~~  234 (386)
                      +++|+||++. .|-..      ......+|+++  ++|.+++  | +.+|.++++ +++.+.+...       ......+
T Consensus       255 ~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~g--G~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~~T~~  329 (466)
T PRK07036        255 ILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLTS--GYQPLGAVIIS-ERLLDVISGPNAKGNVFTHGFTYS  329 (466)
T ss_pred             CEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--Ecccccc--CccccEEEEEc-HHHHHHHhcccCcCcccccCCCCC
Confidence            9999999974 22221      12234678886  5999865  3 236777776 5566554321       1111224


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC------
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS------  308 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~------  308 (386)
                      .++...++.+..++.+..  +...++++.+.+++.+.-.       .+..++.    ..+.++.|.++.+.+..      
T Consensus       330 gnpl~~aaa~a~Le~i~~--~~l~~~~~~~g~~l~~~L~-------~l~~~~~----v~~vrG~Gl~~~ve~~~~~~~~~  396 (466)
T PRK07036        330 GHPVACAAALKNIEIMER--EGLCEHVREVGPYFEERLA-------SLRELPL----VGDVRGDHLMACVECVADKGSKA  396 (466)
T ss_pred             CCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH-------HhccCCC----EEEEEeeceEEEEEEccCccccC
Confidence            456666666665554422  2344555555555543210       1111111    12236778888888732      


Q ss_pred             -----HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHH
Q 016612          309 -----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDK  379 (386)
Q Consensus       309 -----~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~  379 (386)
                           ......+.+.+..+|+.+.+..                            +.+|+++    +.+++++.++.+.+
T Consensus       397 ~~~~~~~~~~~~~~~~~~~Gvl~~~~~----------------------------~~~~l~Ppl~it~~~id~~~~~l~~  448 (466)
T PRK07036        397 LLPEDIAIGQRIDRHCQERGLLVRPLE----------------------------HLCVLSPPLIITRAQIDEIVAILRA  448 (466)
T ss_pred             CCCchhHHHHHHHHHHHHCCcEEeecC----------------------------CEEEEeCCCcCCHHHHHHHHHHHHH
Confidence                 1234567777777777654211                            2266664    45888888888888


Q ss_pred             HHhc
Q 016612          380 ALRT  383 (386)
Q Consensus       380 ~l~~  383 (386)
                      +|++
T Consensus       449 al~~  452 (466)
T PRK07036        449 AIEE  452 (466)
T ss_pred             HHHH
Confidence            8765

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.45  E-value=1.3e-11  Score=116.81  Aligned_cols=285  Identities=13%  Similarity=0.104  Sum_probs=162.9

Q ss_pred             chHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcHHHH-Hhh--hc--------ccC-
Q 016612           55 PTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRL-LSR--VT--------PKT-  117 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~~~~-~~~--~~--------~~~-  117 (386)
                      +...++.+.+.+.++.  +...+++||++|+.+.+.+   .....+|+.-...|++.... +..  ..        ... 
T Consensus        93 ~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~  172 (433)
T PRK00615         93 EQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVD  172 (433)
T ss_pred             HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCC
Confidence            4556666777776654  3678889999998643332   23345777767677664210 000  00        000 


Q ss_pred             ----CcEEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCCC-cc-
Q 016612          118 ----GVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV-LS-  184 (386)
Q Consensus       118 ----g~~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~-~~-  184 (386)
                          ......++..|.+++++.+.   +++.+|+++......|.+.|    +++|.++|++||+++|+||++. |. .. 
T Consensus       173 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~  251 (433)
T PRK00615        173 TDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQ  251 (433)
T ss_pred             CCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccH
Confidence                01122334457888888774   46789999998888888876    6799999999999999999984 22 11 


Q ss_pred             ----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh---hhcCCCCChhhHHHHHhcCCcHHH--HHH
Q 016612          185 ----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTMAL--RVE  255 (386)
Q Consensus       185 ----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~  255 (386)
                          .......|+++  ++|.+++  |+.+|+++++ +++.+.+....   .......++...++.+..++.+..  ..+
T Consensus       252 ~ga~~~~gv~PDi~~--~gK~lgg--G~p~~av~~~-~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~  326 (433)
T PRK00615        252 GGAAAIYHVKPDITV--YGKILGG--GLPAAAVVAH-KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYT  326 (433)
T ss_pred             hHHHHhcCCCCCeEE--EcccccC--Ccceeeeeec-HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHH
Confidence                11234578875  6999964  3457888886 55655543211   112224466666666665554321  122


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-------------CHHhHHHHHhhcCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTKYF  322 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~  322 (386)
                      +..+..+.+.+.+++...  +   .+++    +.    ..+ .|.++.+.+.             +......+..++..+
T Consensus       327 ~~~~~g~~l~~~l~~~~~--~---~g~~----v~----~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  392 (433)
T PRK00615        327 QLSTLEQNFLSPIEEMIR--S---QGFP----VS----LVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSK  392 (433)
T ss_pred             HHHHHHHHHHHHHHHHHH--H---cCCC----eE----EEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHC
Confidence            233333333333332100  0   0111    00    012 4566666662             223345778888788


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      |+...+...      |                   ..+++..-+.++++++++.+.+++++.
T Consensus       393 Gv~~~~~~~------~-------------------~~~ls~~ht~~did~~~~a~~~~~~~~  429 (433)
T PRK00615        393 GVYLSPSPF------E-------------------ASFLSSAHSMENLDYAQNVLIDSLEKV  429 (433)
T ss_pred             CeeecCccc------c-------------------ccceecCCCHHHHHHHHHHHHHHHHHH
Confidence            886544321      0                   112444445688899999999888764

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.45  E-value=4.6e-13  Score=117.13  Aligned_cols=284  Identities=17%  Similarity=0.205  Sum_probs=150.7

Q ss_pred             chHHHHHHHHHhhc---CC----CceEEeCcHH-HHHHH-HHHhcC----CC--CEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           55 PTRDALESLLAKLD---KA----DRALCFTSGM-AALAA-VTHLLG----TG--EEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        55 ~~~~~l~~~l~~~~---g~----~~~i~~~~gt-~al~~-~~~~~~----~g--~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      -+..+|++.+.++.   |-    +..|++++|+ +.+++ +.++-.    .+  -.|+...|.|+.+... ...++....
T Consensus        43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~q-t~~f~s~~y  121 (363)
T PF04864_consen   43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQ-TDFFDSRLY  121 (363)
T ss_dssp             TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHH-CCCT-BTTE
T ss_pred             eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHH-HHhccccCc
Confidence            35666666666653   31    2678888886 77764 444321    11  3688999999888532 122322222


Q ss_pred             EEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC-CCCCCccEEEecc
Q 016612          120 VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSA  198 (386)
Q Consensus       120 ~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~~~di~~~S~  198 (386)
                      +..-    |...+...-+..+-+=++++||||.|.+-  +.+   .+..+..+|.|-+|..|++.. +...+-||.++|+
T Consensus       122 ~w~G----da~~~~~~~~~~~~IElVTSPNNPDG~lr--~~V---~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT~  192 (363)
T PF04864_consen  122 KWAG----DASNFKNSDNPSPYIELVTSPNNPDGQLR--EAV---LNGSSGKVIHDLAYYWPHYTPITAPADHDIMLFTL  192 (363)
T ss_dssp             EEEE----ECCCGTT-S-CCGEEEEEESS-TTT--------S---STTTEEEEEEE-TT-STTTS---S-B--SEEEEEH
T ss_pred             cccc----cHHhhccCCCCCCeEEEEeCCCCCccccc--chh---cCCCCcceeeeeeeecccccccCCCCCCceEEEEE
Confidence            2111    22222221123455667889999999863  111   233456679999999998653 2335779999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC--------------cHHHHHHHHHHHHHHH
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK--------------TMALRVEKQQDNAQKI  264 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l  264 (386)
                      ||.- |++|.|.||.+++++++.+++.........+.+..++.-++.-++              .+..-.+...+.-++|
T Consensus       193 SK~T-GHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L  271 (363)
T PF04864_consen  193 SKLT-GHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKL  271 (363)
T ss_dssp             HHHC-S-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred             eccc-CccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHH
Confidence            9986 899999999999999998888777666677777766544332211              1222234455566677


Q ss_pred             HHHHhhCCCcceEecCCCCCCCchhhhhhc-cCCCCceEEEEeCCH--HhHHHHHhhcCcceeccCCCCccccccccccc
Q 016612          265 AEFLASHPRVKKVNYAGLPEHPGHELHYSQ-AKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       265 ~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      .+.+.+..   .+..+.+.  ++..-+.+. ......+-|+..+.+  ..+..++++.+   |..+.|..          
T Consensus       272 ~~~~~~S~---rFSLq~~~--~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~~---I~tr~G~~----------  333 (363)
T PF04864_consen  272 RAAVSASK---RFSLQKFS--PQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREAK---IITRSGVL----------  333 (363)
T ss_dssp             HHHHCCSS---SEEE---S--CEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCTT---EEEEEGGG----------
T ss_pred             HHHHHhcC---ceecCcCC--chhccccccccCCCCCeEEEecCCcccccHHHHHHhCC---cccCCCCc----------
Confidence            77777654   23333331  122222221 122345667777532  46777777654   54454443          


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHH
Q 016612          342 SHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDK  379 (386)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~  379 (386)
                                  +|.+..|+|||+-  .++-+.++++|..
T Consensus       334 ------------fga~~ryVRlSml~~~d~Fd~l~~rL~~  361 (363)
T PF04864_consen  334 ------------FGADSRYVRLSMLKRDDDFDQLLERLSK  361 (363)
T ss_dssp             ------------GTS-TTEEEEESSS-HHHHHHHHHHHHC
T ss_pred             ------------cCCCCCeEEEeccCCHHHHHHHHHHHHh
Confidence                        2456888999984  4777777777753

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK06917 hypothetical protein; Provisional

Probab=99.45  E-value=5.3e-12  Score=120.14  Aligned_cols=323  Identities=13%  Similarity=0.123  Sum_probs=177.8

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCcccc-CCCCchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHhc------
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLL------   90 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~~------   90 (386)
                      +..+|..+|.+.++......   . ..+.+. ...++...++.+.|.+.+..  +..++++||++|+.+.+.+.      
T Consensus        42 ~~~lGh~hp~v~~Ai~~ql~---~-~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~  117 (447)
T PRK06917         42 TAGIGHGVKEIADAIKEQAE---E-VSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQE  117 (447)
T ss_pred             hccCCCCCHHHHHHHHHHHh---h-CcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHh
Confidence            45578888887775322221   1 112111 12445677888888888753  35677899999986443322      


Q ss_pred             ---CCCCEEEecCCCCCcHHHHHhhhcccC-----------CcEEEEeCC---------------CCHHHHHhhhC----
Q 016612           91 ---GTGEEIVAGDDLYGGTDRLLSRVTPKT-----------GVVVKRVNT---------------CDLDEVASAIG----  137 (386)
Q Consensus        91 ---~~g~~Vlv~~~~~~~~~~~~~~~~~~~-----------g~~~~~v~~---------------~d~~~l~~~~~----  137 (386)
                         ....+|+.-...|++.......+....           +......+.               .+++.+++.++    
T Consensus       118 rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  197 (447)
T PRK06917        118 RGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGA  197 (447)
T ss_pred             cCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCC
Confidence               123578877777766532211211100           111111110               02355666664    


Q ss_pred             CCceEEEEeCCCCC-Cccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCC
Q 016612          138 PWTKLVWVESPTNP-RQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHS  206 (386)
Q Consensus       138 ~~~~~v~~~~~~np-tG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~  206 (386)
                      +++.+|+++..... .|.+.+    +++|.++|++||+++|+||++.. |-..     ......+|+++  ++|.+++  
T Consensus       198 ~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~--~gK~l~~--  273 (447)
T PRK06917        198 EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMT--LGKGLGA--  273 (447)
T ss_pred             CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEE--eeehhcc--
Confidence            46899999987653 345543    89999999999999999999752 1111     12234578875  5999965  


Q ss_pred             Cc-eEEEEEEcChhHHHHHHHh----hhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCC
Q 016612          207 DV-MAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  281 (386)
Q Consensus       207 g~-~~G~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  281 (386)
                      |. .+|.++++ +++.+.+..-    ......+.++...++.+..++.+..  +...++++.+.+++.+.-.  . +.  
T Consensus       274 G~~Pi~a~~~~-~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~--~-l~--  345 (447)
T PRK06917        274 GYTPIAATVVS-DRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEK--HNLPEKAAEKGEYLIKGLQ--K-VQ--  345 (447)
T ss_pred             CCcceEEEEEc-HHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHH--H-HH--
Confidence            32 36777776 4565544321    1112234566666666665554322  2233444444443332100  0 00  


Q ss_pred             CCCCCchhhhhhccCCCCceEEEEeC-C----------HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHH
Q 016612          282 LPEHPGHELHYSQAKGAGSVLSFLTG-S----------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  350 (386)
Q Consensus       282 l~~~~~~~i~~~~~~~~~~~~~~~~~-~----------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~  350 (386)
                       ..++.    ..+.++.|.++.+.+. +          ......+.+.+...|+.+.+.....                 
T Consensus       346 -~~~~~----i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~-----------------  403 (447)
T PRK06917        346 -QQSTI----IGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQ-----------------  403 (447)
T ss_pred             -hcCCC----EEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEeccccc-----------------
Confidence             00110    0123667888888772 1          1335677777888888654321100                 


Q ss_pred             HHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          351 RQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       351 ~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                         .+...+.+|+++.    .++++++++.+.++|++
T Consensus       404 ---~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~  437 (447)
T PRK06917        404 ---DGKEGDAVIIAPPMTITYSELDELLSIFAKSVEE  437 (447)
T ss_pred             ---CCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence               0111345888865    48888888888888765

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.45  E-value=8e-12  Score=122.25  Aligned_cols=153  Identities=15%  Similarity=0.162  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ...+.++.+++.||++...++++|| .++. ++++++++||.||+.+.+|-+..+    .+...|+..+++.+.      
T Consensus       196 ~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~h----aLilsga~PVYl~P~rn~~Gi  271 (714)
T PRK15400        196 PHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTH----LMMMSDVTPIYFRPTRNAYGI  271 (714)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHH----HHHHcCCeEEEecccccccCC
Confidence            5788999999999999877777776 6665 667789999999999999988764    344788888887642      


Q ss_pred             ---------CHHHHHhhhCC--Cce---EEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCC-----Ccc--CC
Q 016612          128 ---------DLDEVASAIGP--WTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VLS--RP  186 (386)
Q Consensus       128 ---------d~~~l~~~~~~--~~~---~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~-----~~~--~~  186 (386)
                               +.+.+++.+..  +.+   .+++++|++ .|.+.+++.|.+.|+.++  |++||||+.-     .+.  +.
T Consensus       272 ~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sa  348 (714)
T PRK15400        272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCG  348 (714)
T ss_pred             ccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcCh
Confidence                     37888888862  333   788888866 799999999999999887  7899998632     121  12


Q ss_pred             CCCCc---c--EEEeccccccccCCCceEEEEEEcC
Q 016612          187 LELGA---D--IVMHSATKFIAGHSDVMAGVLAVKG  217 (386)
Q Consensus       187 ~~~~~---d--i~~~S~sK~~~g~~g~~~G~i~~~~  217 (386)
                      ...++   |  +++.|.||.+.+...  ++++..+.
T Consensus       349 m~~ga~~~~~i~vtQStHKtL~alTQ--aS~LHvkg  382 (714)
T PRK15400        349 MSGGRVEGKVIYETQSTHKLLAAFSQ--ASMIHVKG  382 (714)
T ss_pred             hhcCCCCCCceEEEEchhhcccchhH--HhHHHHcC
Confidence            22344   4  999999999987654  56665543

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.44  E-value=3e-11  Score=118.25  Aligned_cols=153  Identities=14%  Similarity=0.155  Sum_probs=116.3

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ...+.++.+++.||++...++++|| .++. ++++.+++||.||+.+.+|-+..+    .+-..|+..+++.+.      
T Consensus       196 ~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~----aLilsga~PVYl~P~~n~~Gi  271 (713)
T PRK15399        196 PHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAH----LLMMSDVVPIWLKPTRNALGI  271 (713)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHH----HHHHcCCeeEEecccccccCC
Confidence            5788999999999999877777776 6664 677899999999999999988764    344778888887642      


Q ss_pred             ----C-----HHHHHhhhCC-----CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEE-EEeCCCCCCC-----cc--C
Q 016612          128 ----D-----LDEVASAIGP-----WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPV-----LS--R  185 (386)
Q Consensus       128 ----d-----~~~l~~~~~~-----~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~l-i~D~a~~~~~-----~~--~  185 (386)
                          +     .+.+++.+..     +++++++++|++ .|.+.+++.|.+.|   |+.+ ++||||+.-.     +.  .
T Consensus       272 ~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~s  347 (713)
T PRK15399        272 LGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKS  347 (713)
T ss_pred             cCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcC
Confidence                3     3888888752     236888999966 79999999999999   5665 6999986311     11  1


Q ss_pred             CCCC--CccEE---EeccccccccCCCceEEEEEEcCh
Q 016612          186 PLEL--GADIV---MHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       186 ~~~~--~~di~---~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      ....  ++|.+   +.|.||.+.+...  ++++..+..
T Consensus       348 am~~~~~aD~~i~~tQStHKtL~alTQ--aS~iHvk~~  383 (713)
T PRK15399        348 GMSGERVPGKVIFETQSTHKMLAAFSQ--ASLIHIKGE  383 (713)
T ss_pred             hhhCCCCCCeeeeeeeehhccccccch--heeeeecCC
Confidence            1112  46766   9999999988764  788887653

>PRK07483 hypothetical protein; Provisional

Probab=99.44  E-value=3e-12  Score=121.74  Aligned_cols=324  Identities=15%  Similarity=0.142  Sum_probs=178.4

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHH---hc----
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH---LL----   90 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~---~~----   90 (386)
                      ...+|..+|.+.++......+.   .........++...++.+.|.++..  .+...+++||++|+.+.+.   ..    
T Consensus        41 ~~~lGh~~p~v~~av~~ql~~~---~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~  117 (443)
T PRK07483         41 VSCLGHSHPRVIAAIHAQIDRL---AYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEI  117 (443)
T ss_pred             hhccCCCCHHHHHHHHHHHHhc---cCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhc
Confidence            5557888888776433222111   1001111234667778888888764  3578888999999863322   12    


Q ss_pred             -CC-CCEEEecCCCCCcHH-HHHhhhc------ccCC---cEEEEeCC----CC--------------HHHHHhhhC---
Q 016612           91 -GT-GEEIVAGDDLYGGTD-RLLSRVT------PKTG---VVVKRVNT----CD--------------LDEVASAIG---  137 (386)
Q Consensus        91 -~~-g~~Vlv~~~~~~~~~-~~~~~~~------~~~g---~~~~~v~~----~d--------------~~~l~~~~~---  137 (386)
                       ++ ..+|+.-...|++.. ..+ .+.      ..++   ..+..++.    .+              ++++++.+.   
T Consensus       118 g~~~r~~Ii~~~~~YHG~t~~a~-s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  196 (443)
T PRK07483        118 GQPQRRHFIARRQSYHGNTLGAL-AIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELG  196 (443)
T ss_pred             CCCCCcEEEEECCCcCCcCHHHh-hhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence             12 246777666666552 221 111      0011   11122221    11              256665552   


Q ss_pred             -CCceEEEEeCCCC-CCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccC
Q 016612          138 -PWTKLVWVESPTN-PRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGH  205 (386)
Q Consensus       138 -~~~~~v~~~~~~n-ptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~  205 (386)
                       +++.+|+++.... ..|.+.+    ++.|.++|++||+++|+||++. .|-..     ......+|+++.  +|.+++ 
T Consensus       197 ~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~g-  273 (443)
T PRK07483        197 PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTI--AKGLGA-  273 (443)
T ss_pred             CCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeee--hhhhcc-
Confidence             5788999998875 3466654    8999999999999999999975 22211     122346788875  999865 


Q ss_pred             CCc-eEEEEEEcChhHHHHHHHh----hhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecC
Q 016612          206 SDV-MAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  280 (386)
Q Consensus       206 ~g~-~~G~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  280 (386)
                       |+ .+|.++++ +++.+.+..-    ......+.++...++....++.+..  +.+.++++.+.+++.+.-.  .    
T Consensus       274 -G~~Pi~av~~~-~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~--~~l~~~~~~~g~~l~~~L~--~----  343 (443)
T PRK07483        274 -GYQPIGAVLAS-DRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE--DGLLANVRARGEQLRARLR--E----  343 (443)
T ss_pred             -CccccEEEEEc-HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH--H----
Confidence             43 46777776 4565544321    1122234456666665555543322  3344555555555543210  0    


Q ss_pred             CCCCCCchhhhhhccCCCCceEEEEeCCH-----------HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHH
Q 016612          281 GLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  349 (386)
Q Consensus       281 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~  349 (386)
                      ..+.++.    ..+.++.|.++.+.+...           .....+.+.+..+|+.+.+.....                
T Consensus       344 l~~~~~~----i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~----------------  403 (443)
T PRK07483        344 RLGQHPH----VGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTI----------------  403 (443)
T ss_pred             HHhcCCC----eeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccc----------------
Confidence            0011110    012267788888877211           234567777777887654311000                


Q ss_pred             HHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          350 VRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       350 ~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                          .+...+.+|+.+.    .+++++.++.+.++|+++
T Consensus       404 ----~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~  438 (443)
T PRK07483        404 ----DGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAA  438 (443)
T ss_pred             ----cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                0011345888764    588999999998888753

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.44  E-value=4.8e-12  Score=116.57  Aligned_cols=290  Identities=17%  Similarity=0.191  Sum_probs=171.9

Q ss_pred             CCchHHHHHHHHHhhcC---CCceEEeCcHHHHHHHHHHh----c----CC-CCEEEecCCCCCcH-HHHHhhhcc----
Q 016612           53 GNPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTHL----L----GT-GEEIVAGDDLYGGT-DRLLSRVTP----  115 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g---~~~~i~~~~gt~al~~~~~~----~----~~-g~~Vlv~~~~~~~~-~~~~~~~~~----  115 (386)
                      +.| ..+|.+.|+++..   .+.++++.||++|+...+.+    .    +| ..+++.-..+|++. ...+ ++..    
T Consensus        86 ~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~-Sv~g~~~~  163 (449)
T COG0161          86 HEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAM-SVGGPVAL  163 (449)
T ss_pred             Cch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchhe-eccCchhh
Confidence            445 7778888888876   34678888999998643321    1    23 23477777777554 2111 1111    


Q ss_pred             ------cCCcEEEEeCCC-----------C------HHHHHhhhC----CCceEEEEeCCCCC-Cccccc----HHHHHH
Q 016612          116 ------KTGVVVKRVNTC-----------D------LDEVASAIG----PWTKLVWVESPTNP-RQQICD----IRKIAE  163 (386)
Q Consensus       116 ------~~g~~~~~v~~~-----------d------~~~l~~~~~----~~~~~v~~~~~~np-tG~~~~----l~~i~~  163 (386)
                            ..-..+.+++..           +      .++|++.+.    +++.+++++....- .|.+.|    ++++.+
T Consensus       164 ~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~  243 (449)
T COG0161         164 RHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVRE  243 (449)
T ss_pred             hhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHH
Confidence                  011112222221           1      455666654    57889999988776 666654    899999


Q ss_pred             HHHHcCCEEEEeCCCC-C---CCccCC--CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh-----hhhcC
Q 016612          164 MAHAHGALLLVDNSIM-S---PVLSRP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----QNAEG  232 (386)
Q Consensus       164 la~~~~~~li~D~a~~-~---~~~~~~--~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-----~~~~~  232 (386)
                      +|++||+++|.||+.. .   |.+...  ....+|+++  ++|.+.+. -+-.|.++++ +.+.+.+..-     .....
T Consensus       244 iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT~G-Y~Pl~a~l~~-~~I~~~~~~~~~~~f~HG~T  319 (449)
T COG0161         244 ICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLTGG-YLPLSAVLTS-DRIYEAFSDGDAGAFMHGHT  319 (449)
T ss_pred             HHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeee--eccccccc-chhhHhHhhh-HHHHHHHhcccCCeeccCCc
Confidence            9999999999999954 2   222211  224568886  58988642 2345555555 4455544321     11222


Q ss_pred             CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC----
Q 016612          233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----  308 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----  308 (386)
                      -.-.+..+++++..++.+.  .+.+.++.+.+..++.+.-.      +.+.++|.    ..+.++.|.+..+++-.    
T Consensus       320 YsghPlacAaAla~L~i~e--~e~l~~~~~~~~~~l~~~L~------~~l~~~p~----VgdVR~~Gli~~iElv~d~~t  387 (449)
T COG0161         320 YSGNPLACAAALANLDILE--EEDLLERVAEIGAYLQAGLQ------AALADHPL----VGDVRGLGLIGAIELVADKAT  387 (449)
T ss_pred             cccCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHH------HhcccCCc----EEEeeccceEEEEEEeccccc
Confidence            3456667777666665332  24455555555555554210      00222211    12336677778887621    


Q ss_pred             -----HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          309 -----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       309 -----~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                           .....++.+.+.++|+.+++.+....+.+|                        ++++.++++++++.+.++++.
T Consensus       388 ~~~f~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~PP------------------------liit~~eid~l~~~l~~al~~  443 (449)
T COG0161         388 KTPFEARVGARVRAAALERGLLIRPLGDVIYLMPP------------------------LIITREEIDELVDALREALDE  443 (449)
T ss_pred             ccchhhhHHHHHHHHHHHCCeEEeecCCEEEEcCC------------------------ccCCHHHHHHHHHHHHHHHHH
Confidence                 233678888888999998876544444445                        456779999999999999975


Q ss_pred             C
Q 016612          384 G  384 (386)
Q Consensus       384 ~  384 (386)
                      .
T Consensus       444 ~  444 (449)
T COG0161         444 T  444 (449)
T ss_pred             H
Confidence            4

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.43  E-value=1.1e-10  Score=104.77  Aligned_cols=198  Identities=26%  Similarity=0.310  Sum_probs=144.9

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CC--c----hHHHHHHHHHhhcCCC--ceEEeCcHHHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN--P----TRDALESLLAKLDKAD--RALCFTSGMAA   82 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~--~----~~~~l~~~l~~~~g~~--~~i~~~~gt~a   82 (386)
                      ...++= +.+|++-.-|++.....+..+    +-...|.++ ..  .    ..-+....+++++|.+  +.-..-.+|++
T Consensus        75 ~~~sfi-G~GyY~~~~P~vI~rnile~p----ewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAa  149 (450)
T COG0403          75 VFTSFI-GAGYYDTYTPPVILRNILENP----EWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAA  149 (450)
T ss_pred             hhhhhc-cCcccCCcCcHHHHHHhhcCc----cccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHH
Confidence            444454 677888877776663222222    233345554 21  1    2334567788999988  67777777755


Q ss_pred             HH-HHHH--hcC-CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCc-cccc
Q 016612           83 LA-AVTH--LLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ-QICD  157 (386)
Q Consensus        83 l~-~~~~--~~~-~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG-~~~~  157 (386)
                      -. ++++  .-+ +.++++|+...|+.+..+++-.++..|++++.++.+|.+++++..+.++..+++.+|+. .| ...+
T Consensus       150 AEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQyP~~-~G~~~~d  228 (450)
T COG0403         150 AEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPNT-FGIVEED  228 (450)
T ss_pred             HHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEecCCC-CCccchh
Confidence            43 3344  222 36899999999999999998899999999999999999999998335889999999986 56 5667


Q ss_pred             HHHHHHHHHHcCCEEEEeC-CCCCCCccCCCCCCccEEEecccc-----ccccCCCceEEEEEEcCh
Q 016612          158 IRKIAEMAHAHGALLLVDN-SIMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~-a~~~~~~~~~~~~~~di~~~S~sK-----~~~g~~g~~~G~i~~~~~  218 (386)
                      +++|.+.+|++|.++++=. ..+.+.+..|.++|+||+++|.+-     +|+||.   .|++.++++
T Consensus       229 ~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPh---ag~fA~~~~  292 (450)
T COG0403         229 LRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPH---AGYFAVKDE  292 (450)
T ss_pred             HHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcc---eeeeeEhHh
Confidence            9999999999998777632 235566777889999999999877     455554   799998854

>PRK06148 hypothetical protein; Provisional

Probab=99.43  E-value=9.2e-12  Score=129.23  Aligned_cols=290  Identities=20%  Similarity=0.186  Sum_probs=169.2

Q ss_pred             CCchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcHHHHHhhhc-----ccCC----
Q 016612           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVT-----PKTG----  118 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~~~~~~~~~-----~~~g----  118 (386)
                      .++...++.+.|.+.+..  +...+++||++|..+.+.+   ...+.+|++.+..|++.......+.     +..+    
T Consensus       661 ~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~  740 (1013)
T PRK06148        661 LHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRP  740 (1013)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCC
Confidence            345666677777776643  4678889999998644332   2334567777777766521110100     0011    


Q ss_pred             cEEEEe--------CCC--C-------HHHHHhhhC------CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCE
Q 016612          119 VVVKRV--------NTC--D-------LDEVASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGAL  171 (386)
Q Consensus       119 ~~~~~v--------~~~--d-------~~~l~~~~~------~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~  171 (386)
                      ..+..+        +..  +       .+++++.+.      +++.+|+++......|.+.+    +++|.++|+++|++
T Consensus       741 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~l  820 (1013)
T PRK06148        741 DHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGV  820 (1013)
T ss_pred             CCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCE
Confidence            011111        111  1       133444432      46889999988877787765    99999999999999


Q ss_pred             EEEeCCCC-CCCcc------CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh-hhcCCCCChhhHHHH
Q 016612          172 LLVDNSIM-SPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWIC  243 (386)
Q Consensus       172 li~D~a~~-~~~~~------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  243 (386)
                      +|.||++. .|-..      ......+|+++  ++|.+++  |+.+|.++++ +++.+.+..-. .....+.++...++.
T Consensus       821 lI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lgg--G~Plgav~~~-~ei~~~~~~g~~~~~Tf~gnpla~aaa  895 (1013)
T PRK06148        821 CIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGN--GHPMGAVVTT-REIADSFDNGMEYFNTFGGNPVSCAIG  895 (1013)
T ss_pred             EEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccC--CcceEEEEEc-HHHHhhccCCCccccCCCCCHHHHHHH
Confidence            99999984 23222      11234578876  5999965  4568888886 55665443211 122334566666666


Q ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--------HHhHHHH
Q 016612          244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------LALSKHV  315 (386)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~l  315 (386)
                      +..++.+..  +...++++.+.+++.+.-.  . +.   ..++.    ..+.++.|.++.+.+..        ......+
T Consensus       896 ~a~L~~i~~--e~l~~~~~~~G~~l~~~L~--~-l~---~~~~~----i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i  963 (1013)
T PRK06148        896 LAVLDIIED--EDLQRNALEIGNYLLAGLR--E-LQ---DRFDI----IGDVRGMGLFLGIELVTDRKTKAPATAIARYV  963 (1013)
T ss_pred             HHHHHHHhh--ccHHHHHHHHHHHHHHHHH--H-HH---HhCCC----ceEEeeeceEEEEEecCCccccCccHHHHHHH
Confidence            665554422  3445555555555543210  0 00   01110    01236778888888731        2345678


Q ss_pred             HhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      .+.+...|+.+...+.                         ..+.+|+.+.    .++++++++.+.++|+++
T Consensus       964 ~~~~~~~Gvl~~~~g~-------------------------~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        964 KNGARERGILIGTEGP-------------------------HDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             HHHHHhCCeEEeccCC-------------------------CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            8888888887543211                         1345788764    488888888998888764

>PRK07480 putative aminotransferase; Validated

Probab=99.40  E-value=5.2e-11  Score=113.60  Aligned_cols=284  Identities=16%  Similarity=0.185  Sum_probs=159.0

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHh---c----C-C-CCEEEecCCCCCcHH-HHHhhhc------c
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---L----G-T-GEEIVAGDDLYGGTD-RLLSRVT------P  115 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~---~----~-~-g~~Vlv~~~~~~~~~-~~~~~~~------~  115 (386)
                      ++...++.+.|.+.++.  +...+++||++|+.+.+.+   .    . + ..+|+.-...|++.. ..+ .+.      +
T Consensus        93 ~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~-s~~g~~~~~~  171 (456)
T PRK07480         93 HPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGA-SLGGMKYMHE  171 (456)
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhh-hccCChhhhc
Confidence            34566666777766643  4678889999998633321   1    1 2 346777666666642 111 110      0


Q ss_pred             cCCc---EEEEeCCC---------C--------HHHHHhhh----CCCceEEEEeCCCCCCccccc----HHHHHHHHHH
Q 016612          116 KTGV---VVKRVNTC---------D--------LDEVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHA  167 (386)
Q Consensus       116 ~~g~---~~~~v~~~---------d--------~~~l~~~~----~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  167 (386)
                      ..+.   .+..++..         +        .+.+++.+    .+++.+|+++......|.+.+    +++|.++|++
T Consensus       172 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~  251 (456)
T PRK07480        172 QGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRK  251 (456)
T ss_pred             ccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            1111   12222211         1        25555444    257889999988887787765    8999999999


Q ss_pred             cCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCCc-eEEEEEEcChhHHHHHHH----hhhhcCCCCC
Q 016612          168 HGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDV-MAGVLAVKGERLAKELYF----LQNAEGSGLA  236 (386)
Q Consensus       168 ~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~-~~G~i~~~~~~~~~~~~~----~~~~~~~~~~  236 (386)
                      ||+++|+||++. .|-..     ......+|+++  ++|.++|  |+ .+|.++++ +++.+.+..    .......+.+
T Consensus       252 ~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~g--G~~Pi~av~~~-~~i~~~~~~~~~~~~~~~T~~gn  326 (456)
T PRK07480        252 YDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT--IAKGLTS--GYIPMGAVGVG-DRVAEVLIEEGGEFNHGFTYSGH  326 (456)
T ss_pred             cCCEEEEechhhCCCcCcchhhhhhcCCCCCeee--eehhhcc--CCccceEEEEc-HHHHHHHhcCCCCcccCCCCCcC
Confidence            999999999984 32222     12234578875  5999865  32 36777766 556655421    1122233556


Q ss_pred             hhhHHHHHhcCCcHHHHHHHHHHHH-HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH------
Q 016612          237 PFDCWICLRGVKTMALRVEKQQDNA-QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL------  309 (386)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~------  309 (386)
                      +...+++...++.+..  +...+++ +.+.+++.+.-.  .     +..++.    ..+.++.|.++.+.+...      
T Consensus       327 pl~~Aaa~a~L~~l~~--~~l~~~~~~~~g~~l~~~l~--~-----l~~~~~----i~~vrG~Glm~gie~~~~~~~~~~  393 (456)
T PRK07480        327 PVAAAVALANLRILRD--EGIVERVRDDTGPYLQKRLR--E-----LADHPL----VGEVRGVGLVGAIELVKDKATRER  393 (456)
T ss_pred             HHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH--H-----hhcCCC----eeeEEeecceEEEEEecccccccc
Confidence            6666666666654322  2233444 244444332110  0     111110    112266788888887211      


Q ss_pred             -----HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHH
Q 016612          310 -----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKA  380 (386)
Q Consensus       310 -----~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~  380 (386)
                           .....+.+++..+|+.+...                            .+.+|+++.    .++++++++.+.++
T Consensus       394 ~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------~~~l~~~Ppl~it~~eid~~~~~l~~a  445 (456)
T PRK07480        394 FEAGGGVGTICRDHCFANGLIMRAV----------------------------GDRMIISPPLVITHAEIDELVEKARKA  445 (456)
T ss_pred             CcchhhHHHHHHHHHHHCCcEEeec----------------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                 11245666666677754321                            123777764    48888888888888


Q ss_pred             HhcC
Q 016612          381 LRTG  384 (386)
Q Consensus       381 l~~~  384 (386)
                      |+++
T Consensus       446 l~~~  449 (456)
T PRK07480        446 LDAT  449 (456)
T ss_pred             HHHH
Confidence            8653

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.40  E-value=3e-11  Score=121.38  Aligned_cols=154  Identities=24%  Similarity=0.336  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHh-c--CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCH
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHL-L--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL  129 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~-~--~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~  129 (386)
                      ..-+++..+++++|.+  +.-+...+|++..+ +++. .  +++++|+|++..|+.+..+++..++..|++++.++.   
T Consensus       110 ~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~~---  186 (939)
T TIGR00461       110 ALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVDC---  186 (939)
T ss_pred             HHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEcH---
Confidence            3556788899999998  56777777765543 3342 2  234899999999999988887778899999988854   


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC-CCCccCCCCCCccEEEecccccc-----c
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKFI-----A  203 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-~~~~~~~~~~~~di~~~S~sK~~-----~  203 (386)
                      +++++.+  ++.++++.+|++ .|.+.|+++|.+++|++|.+++++.-.. ...+..|.++|+||++++..++.     +
T Consensus       187 ~~l~~~~--~~~~v~~q~Pn~-~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~G  263 (939)
T TIGR00461       187 SDIKKAV--DVFGCLLQYPAT-DGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYG  263 (939)
T ss_pred             HHHhhcC--CEEEEEEECCCC-CeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCC
Confidence            5566555  577888888876 7999999999999999999999966543 34566788899999998876643     3


Q ss_pred             cCCCceEEEEEEcCh
Q 016612          204 GHSDVMAGVLAVKGE  218 (386)
Q Consensus       204 g~~g~~~G~i~~~~~  218 (386)
                      ||.   .|++.++++
T Consensus       264 GP~---aG~~a~~~~  275 (939)
T TIGR00461       264 GPH---AAFFAVKDE  275 (939)
T ss_pred             CCc---eeeeeecHh
Confidence            543   799998754

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.39  E-value=3.9e-11  Score=112.93  Aligned_cols=155  Identities=25%  Similarity=0.318  Sum_probs=121.0

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ...+.++..++.+|++...++.+|| .|+. .+++++++||.||+++++|-+..+.    .-..|+..++..+.      
T Consensus        71 ~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~g----lilaGa~Pvyl~p~~np~~g  146 (557)
T COG1982          71 PIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHG----LILAGATPVYLEPSRNPLYG  146 (557)
T ss_pred             cHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHH----HHHcCCceEEecCCCCcccc
Confidence            5788999999999999777777777 6664 6788999999999999999887643    23567777666542      


Q ss_pred             -----CHHHHHhhhC--CCc-eEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCC-----CccC-CCCCCccE
Q 016612          128 -----DLDEVASAIG--PWT-KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VLSR-PLELGADI  193 (386)
Q Consensus       128 -----d~~~l~~~~~--~~~-~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~-----~~~~-~~~~~~di  193 (386)
                           +.+.+.+.+.  +.. +++++++|+. .|.+.++++|.+.++..++++.+|+++..-     ..+. ....++|+
T Consensus       147 i~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~  225 (557)
T COG1982         147 IIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADF  225 (557)
T ss_pred             ccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceE
Confidence                 6777877654  334 7888899888 699999999999999999999999997632     2222 22357899


Q ss_pred             EEeccccccccCCCceEEEEEEcC
Q 016612          194 VMHSATKFIAGHSDVMAGVLAVKG  217 (386)
Q Consensus       194 ~~~S~sK~~~g~~g~~~G~i~~~~  217 (386)
                      ++.|.||.+++.+  .+..+..++
T Consensus       226 ~tqS~HK~l~alS--QaS~iHv~~  247 (557)
T COG1982         226 VTQSTHKLLAALS--QASMIHVKD  247 (557)
T ss_pred             EEechhhhhhhhh--hhHHHhhCC
Confidence            9999999997655  467777764

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=4.9e-12  Score=111.64  Aligned_cols=179  Identities=17%  Similarity=0.201  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHh
Q 016612           56 TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS  134 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~  134 (386)
                      ..-.+++.+++++|.++.++.+-|.+++. ++.++.++||.+.+.+....+..    .-.+...-.+.++..+|.++++.
T Consensus       140 vHldlE~~iakF~G~E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nfaIq----~GlqlSRS~i~~Fkhndm~~ler  215 (467)
T KOG1358|consen  140 VHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQ----KGLQLSRSTISYFKHNDMEDLER  215 (467)
T ss_pred             eecccHHHHHHhhCCcceeeeccccchhhhcchhhhccCcEEEEehhhhHHHH----HHHhhhhheeEEecCCCHHHHHH
Confidence            46678999999999999999999998886 78889999999998776665553    44445556777888888888887


Q ss_pred             hhCCCc-------------eEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC----------CCCc
Q 016612          135 AIGPWT-------------KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELGA  191 (386)
Q Consensus       135 ~~~~~~-------------~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~----------~~~~  191 (386)
                      .+.+++             +.|+++....++|.+.|+.+|.++..+|...+|+|+.++.|.+....          ....
T Consensus       216 ll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~i  295 (467)
T KOG1358|consen  216 LLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDI  295 (467)
T ss_pred             hccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccce
Confidence            765332             46677888888999999999999999999999999999877654211          1246


Q ss_pred             cEEEeccccccccCCCceEEEEEEcChhH-HHHHHHhhhhcCCCCChhhHHH
Q 016612          192 DIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       192 di~~~S~sK~~~g~~g~~~G~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      |++++|+.-.++..    +|+.+++.--+ .+.+....+.+...+.+..+.+
T Consensus       296 Div~~sm~~alas~----GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~a  343 (467)
T KOG1358|consen  296 DIVTASMETALASG----GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGA  343 (467)
T ss_pred             eeeeeccccccccc----CceeecceeeEeeeeccccceeeeccCchhhhhh
Confidence            89999999888542    58887753211 2333333333344455544443

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.37  E-value=2.4e-10  Score=104.45  Aligned_cols=275  Identities=12%  Similarity=0.017  Sum_probs=168.8

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeCc-HHHHHH-HHHHhcCCCCEEE-ecCCCCCcHHHHHhhhcccCCcEEEEeCC---
Q 016612           56 TRDALESLLAKLDKAD---RALCFTS-GMAALA-AVTHLLGTGEEIV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNT---  126 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~-gt~al~-~~~~~~~~g~~Vl-v~~~~~~~~~~~~~~~~~~~g~~~~~v~~---  126 (386)
                      +.+++++.+.++++.+   +.+++.+ ||.++. +++.++.+||+++ +...++.+..  |...++++| ++..+..   
T Consensus        50 i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r--~~~ea~~~g-~v~~~~~~~~  126 (364)
T PRK12462         50 LLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRK--AIGEASRVA-AMRVVWDGAA  126 (364)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHH--HHHHHHhcC-CceEecCcCC
Confidence            5788899999999874   3444444 567787 4566889999665 4444544442  245666666 3333321   


Q ss_pred             ------CCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccc
Q 016612          127 ------CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSAT  199 (386)
Q Consensus       127 ------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~s  199 (386)
                            .+++++  .++++.+.|.+++-...+|...|     ++.+.++.++|+|.+.+.+..+ +..+  .|+++.+..
T Consensus       127 ~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~--~dvi~agsQ  197 (364)
T PRK12462        127 SGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEA--YGMVYAHAQ  197 (364)
T ss_pred             CCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHH--ccEEEeecc
Confidence                  134444  23456788988988889999986     3333468999999998765543 2222  399999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHH----------hhhhcCCCCCh-hhHHHHHhcC-----C--cHHHHHHHHHHHH
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKELYF----------LQNAEGSGLAP-FDCWICLRGV-----K--TMALRVEKQQDNA  261 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~-----~--~~~~~~~~~~~~~  261 (386)
                      |.++ |+|  .++++.+++.+.+....          .......+.++ ...+++...+     +  .+..+.++..+.+
T Consensus       198 Knlg-P~G--ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka  274 (364)
T PRK12462        198 KNLG-PAG--VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKA  274 (364)
T ss_pred             ccCC-CCc--eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            9995 888  58888886654321110          01111111222 2222222221     1  3455566667777


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      +.+.+++++...   ++.....         +..++. --++|.+.++...++|+++++.+|+..--|+.          
T Consensus       275 ~~ly~~id~~~~---~~~~~~~---------~~~RS~-mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr----------  331 (364)
T PRK12462        275 AMLYATLDALNE---VIDCHAH---------RAARST-MNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHR----------  331 (364)
T ss_pred             HHHHHHHHhCCC---cccCCCC---------hhhcCc-ceEEEEcCCHHHHHHHHHHHHHCCCccccCCc----------
Confidence            788888877642   1111110         011221 23567778888899999999999997655553          


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhc
Q 016612          342 SHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~  383 (386)
                                     .-|.+|+|+    ..+.++.+++.+++.-++
T Consensus       332 ---------------~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~  362 (364)
T PRK12462        332 ---------------SIGGIRASLYNAVSEQAVSRLCAFLKDFAIR  362 (364)
T ss_pred             ---------------ccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence                           124499998    458888888888776543

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.36  E-value=6.9e-11  Score=108.60  Aligned_cols=305  Identities=13%  Similarity=0.063  Sum_probs=174.0

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcC-CCCEEEecCC-------CCCcHHHHHhhhcccCCcEEEE
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG-TGEEIVAGDD-------LYGGTDRLLSRVTPKTGVVVKR  123 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~-~g~~Vlv~~~-------~~~~~~~~~~~~~~~~g~~~~~  123 (386)
                      ++|...++++.+++++|.+..+.+.+|+.+-. +...+++ ||+++.+..+       .|..+.   ...+...|+..+.
T Consensus        72 gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett---~g~a~l~G~~~~~  148 (467)
T TIGR02617        72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT---QGHSQINGCTARN  148 (467)
T ss_pred             cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecc---hHHHHHcCceeec
Confidence            56788999999999999999999999986655 4445667 6777664433       222211   1234456655544


Q ss_pred             eC---------------CCCHHHHHhhhCC----CceEEEEeCCCCCCcc-ccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          124 VN---------------TCDLDEVASAIGP----WTKLVWVESPTNPRQQ-ICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       124 v~---------------~~d~~~l~~~~~~----~~~~v~~~~~~nptG~-~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      +.               ..|++++++.+.+    +...+.++-.+|..|. +.+   ++++.++|++||+.++.|.+-..
T Consensus       149 l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~  228 (467)
T TIGR02617       149 VYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFA  228 (467)
T ss_pred             ccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHH
Confidence            31               1289999999873    4455555544565444 444   78999999999999999998422


Q ss_pred             -----------CCccCC-C------CCCccEEEeccccccccCCCceEEEEEEcCh---hHHHHHHHhhhhc-----CCC
Q 016612          181 -----------PVLSRP-L------ELGADIVMHSATKFIAGHSDVMAGVLAVKGE---RLAKELYFLQNAE-----GSG  234 (386)
Q Consensus       181 -----------~~~~~~-~------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~---~~~~~~~~~~~~~-----~~~  234 (386)
                                 +....+ .      ...+|.+.+|++|.++.|-   +|+++++++   ++.++.+......     -.+
T Consensus       229 nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApv---Gg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGG  305 (467)
T TIGR02617       229 ENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGG  305 (467)
T ss_pred             HHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcc---cceEEecchhHHHHHHHHHhhcccccCCcCcCc
Confidence                       111111 1      1468999999999997764   699999988   4444433322211     124


Q ss_pred             CChhhHHHHHhcCCcH--HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhH
Q 016612          235 LAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  312 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  312 (386)
                      ++.-...++..++...  ...+.......+.|.+.|.+..-      |-.. ..|+-++.+..+-...+-.-.++....+
T Consensus       306 lagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~Gv------pi~~-~Gghav~iDa~~~lphip~~~fpa~al~  378 (467)
T TIGR02617       306 LEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEIGV------VCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALA  378 (467)
T ss_pred             hhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhCCC------cEEe-cCccEEEEehhhhCCCCChhhCcHHHHH
Confidence            4444444444444321  33444555666777777776531      1111 2233332211000000011123445667


Q ss_pred             HHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-----cCChHHHHHHHHHHHhc
Q 016612          313 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       313 ~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i~~l~~~l~~  383 (386)
                      .+++.+.+++++-...-..   -.-|-....  .        ...-.++|+.+.     ..+++...+.+....++
T Consensus       379 ~~ly~~~GiR~~e~G~~~~---~rd~~~~~~--~--------~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       379 CELYKVAGIRAVEIGSLLL---GRDPKTGKQ--L--------PCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             HHHHHHcCcceEeecceec---ccCCCCCcc--C--------CCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence            7788887777654221000   000111000  0        001367999985     48888888888777654

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.35  E-value=1.5e-10  Score=110.15  Aligned_cols=317  Identities=16%  Similarity=0.128  Sum_probs=171.0

Q ss_pred             CCCCCCcccceee--eeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcC---CCceEEeCcHHHHHHHHHHhc----
Q 016612           20 FDPYGALSTPLYQ--TATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTHLL----   90 (386)
Q Consensus        20 ~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~gt~al~~~~~~~----   90 (386)
                      ...+|..+|.+.+  +......++..... .......+...++.+.+.++.+   .+...+++||++|+.+.+.+.    
T Consensus        56 ~~~lGh~~p~v~~~~ai~~ql~~l~~~~~-~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~  134 (443)
T PRK08297         56 SSALGMNHPALADDPEFRAELGRAALNKP-SNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWK  134 (443)
T ss_pred             hhcCCCCChHHhhHHHHHHHHHHhhhhcc-ccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHh
Confidence            4457888888776  32211111100000 0011123456667777777662   246888999999986443322    


Q ss_pred             -----CC------CCEEEecCCCCCcHHHHHhhhccc-------CC------cEEEEe--CC-------------CCHHH
Q 016612           91 -----GT------GEEIVAGDDLYGGTDRLLSRVTPK-------TG------VVVKRV--NT-------------CDLDE  131 (386)
Q Consensus        91 -----~~------g~~Vlv~~~~~~~~~~~~~~~~~~-------~g------~~~~~v--~~-------------~d~~~  131 (386)
                           ..      ..+|+.-..+|++...........       ..      +....+  +.             .++++
T Consensus       135 ~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (443)
T PRK08297        135 SRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQ  214 (443)
T ss_pred             hccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHH
Confidence                 01      256887777776653221111100       00      000001  10             02344


Q ss_pred             HHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc-----CCCCCCccEEEecc
Q 016612          132 VASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSA  198 (386)
Q Consensus       132 l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~  198 (386)
                      +++.+.   +++.+|+++......|.+.+    +++|.++|++||+++|+||++. .+...     ......+|+++  +
T Consensus       215 ~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~  292 (443)
T PRK08297        215 ARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--F  292 (443)
T ss_pred             HHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE--e
Confidence            555553   67899999988887787743    8999999999999999999985 23222     11234678886  5


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHH-Hh----hhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCC
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELY-FL----QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      +|.+ +.    +|++.++ + +..... ..    ......+.++....+....++.+..  +...++.+.+.+++.+.-.
T Consensus       293 gK~l-~~----~a~l~~~-~-i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~  363 (443)
T PRK08297        293 GKKT-QV----CGIMAGR-R-VDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEE--DGLVENAARQGEYLLARLE  363 (443)
T ss_pred             cccc-cc----cceecch-H-HHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence            9987 22    4555543 2 322111 11    1122224556666655555543322  2333444444444432110


Q ss_pred             cceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          274 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       274 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                        . +   ...++..   ..+.++.|.++.+.+.+......+.+.+..+|+.+.+++                       
T Consensus       364 --~-l---~~~~~~~---~~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~~-----------------------  411 (443)
T PRK08297        364 --E-L---AAEFPAV---VSNVRGRGLMCAFDLPTTADRDEVIRRLWEEGVLVLPCG-----------------------  411 (443)
T ss_pred             --H-H---HHHCCCc---ceeeeccceEEEEEecCHHHHHHHHHHHHHCCEEEecCC-----------------------
Confidence              0 0   0001100   012256789999999766666778888888888654322                       


Q ss_pred             cCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          354 RGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       354 ~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                          ...+|++++    .++++++++.+.++++++
T Consensus       412 ----~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        412 ----ERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             ----CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence                123788654    478888888888887653

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.34  E-value=4e-10  Score=107.13  Aligned_cols=281  Identities=15%  Similarity=0.110  Sum_probs=155.7

Q ss_pred             CchHHHHHHHHHhhcC---CCceEEeCcHHHHHHHHHHhc---C------C------CCEEEecCCCCCcHHHHHhhhcc
Q 016612           54 NPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTHLL---G------T------GEEIVAGDDLYGGTDRLLSRVTP  115 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g---~~~~i~~~~gt~al~~~~~~~---~------~------g~~Vlv~~~~~~~~~~~~~~~~~  115 (386)
                      .+...++.+.++++.+   .+...+++||++|+.+.+.+.   .      .      +.+|+.-+..|++..........
T Consensus        84 ~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~  163 (431)
T TIGR03251        84 TVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTN  163 (431)
T ss_pred             CHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccC
Confidence            3455666666776642   346788899999986433321   1      1      36788777777665322111111


Q ss_pred             cCCc-----EE---EE--e-----CC-------------CCHHHHHhhh---CCCceEEEEeCCCCCCccccc----HHH
Q 016612          116 KTGV-----VV---KR--V-----NT-------------CDLDEVASAI---GPWTKLVWVESPTNPRQQICD----IRK  160 (386)
Q Consensus       116 ~~g~-----~~---~~--v-----~~-------------~d~~~l~~~~---~~~~~~v~~~~~~nptG~~~~----l~~  160 (386)
                      ....     ..   ..  .     +.             .+++++++.+   .+++.+|+++......|.+.+    +++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~  243 (431)
T TIGR03251       164 TDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRA  243 (431)
T ss_pred             CccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHH
Confidence            0000     00   00  0     00             1234445555   368999999999888887753    899


Q ss_pred             HHHHHHHcCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHH-Hh----hh
Q 016612          161 IAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FL----QN  229 (386)
Q Consensus       161 i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~-~~----~~  229 (386)
                      |.++|++||+++|+||+++ .+...     ......+|+++  ++|.+  +.   +|++... + +.+... ..    ..
T Consensus       244 l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~--~gK~~--~~---~g~~~~~-~-i~~~~~~~~~~~~~~  314 (431)
T TIGR03251       244 MRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA--FGKKT--QV---CGIMAGR-R-VDEVADNVFAVPSRL  314 (431)
T ss_pred             HHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE--ecccC--cc---ceEEecc-h-HHHhhhhcccCcccc
Confidence            9999999999999999986 23221     12234678886  58876  21   4666543 2 222111 01    11


Q ss_pred             hcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC
Q 016612          230 AEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  307 (386)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~  307 (386)
                      ....+.++...++....++.+..  ..+...+..+.+.+.|++..          ...+++   ..+.++.|.++.+.+.
T Consensus       315 ~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~----------~~~~~~---i~~vrg~G~~~~i~~~  381 (431)
T TIGR03251       315 NSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELA----------AEFPHL---VSNPRGRGLMCAFDLP  381 (431)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH----------HhCccc---eecccccceeEEEEeC
Confidence            11223455555555555543321  11233333344444443311          000100   0122567888899887


Q ss_pred             CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          308 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       308 ~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      +......+.+.+..+|+.+.+.+                           .+.+|++++....++.++.+.++|++
T Consensus       382 ~~~~~~~~~~~l~~~Gvl~~~~g---------------------------~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       382 STADRDEVIRQLYREGVLLLGCG---------------------------ERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             CHHHHHHHHHHHHhCCeEEecCC---------------------------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence            66666778888888888654321                           23489998877777777776666654

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.32  E-value=1.1e-09  Score=101.36  Aligned_cols=157  Identities=24%  Similarity=0.271  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHHH--h-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCH
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTH--L-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL  129 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~~--~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~  129 (386)
                      ..-+++..+++++|.|  +.-+..+++++-. ++++  . -+++++|++++..|+.+...++..+...|++++.++.++-
T Consensus       111 ~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~  190 (429)
T PF02347_consen  111 ALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDED  190 (429)
T ss_dssp             HHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTT
T ss_pred             HHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEeccccc
Confidence            4667889999999998  3455555553332 2232  2 2334699999999999988888889999999999986521


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCC--CCCCccCCCCCCccEEEeccccccccC--
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI--MSPVLSRPLELGADIVMHSATKFIAGH--  205 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~--~~~~~~~~~~~~~di~~~S~sK~~~g~--  205 (386)
                      ....   ++++.+|++.+|++ .|.+.++++|.+++|++|.++++ .+-  +.+.+..|.++|+||++++ +|.|+-|  
T Consensus       191 ~~~d---~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~  264 (429)
T PF02347_consen  191 GTTD---DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMG  264 (429)
T ss_dssp             CSB----STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---C
T ss_pred             CCcc---ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCC
Confidence            1111   78999999999997 79999999999999999999887 553  3455667888999999887 7755311  


Q ss_pred             -CCceEEEEEEcCh
Q 016612          206 -SDVMAGVLAVKGE  218 (386)
Q Consensus       206 -~g~~~G~i~~~~~  218 (386)
                       +|--.|++.++++
T Consensus       265 ~GGP~~G~~a~~~~  278 (429)
T PF02347_consen  265 FGGPGAGFFAVRED  278 (429)
T ss_dssp             CC-S--EEEEE-GG
T ss_pred             CCCCCeeeEEEhhh
Confidence             1112789998865

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.32  E-value=2.3e-11  Score=109.14  Aligned_cols=147  Identities=20%  Similarity=0.241  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHhhcCCCceEEe-CcHHHHH----HHHHHh-cCC----CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           56 TRDALESLLAKLDKADRALCF-TSGMAAL----AAVTHL-LGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~-~~gt~al----~~~~~~-~~~----g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      +..+++++|++++|.|.+-+. .+|+++=    .++.+. -..    .+.+|+|+-.|+...    ..+...|.+++.|+
T Consensus       110 li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNP----ASAam~G~~VV~V~  185 (496)
T COG1003         110 LIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNP----ASAAMAGFKVVVVK  185 (496)
T ss_pred             HHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCCh----hhHhhcCceEEEEe
Confidence            688899999999999975554 5676552    334333 222    468999999998875    55668999999999


Q ss_pred             CC-----CHHHHHhhhCCCceEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEeCCCCCCC--ccCCCCCCccEEEec
Q 016612          126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHS  197 (386)
Q Consensus       126 ~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~~di~~~S  197 (386)
                      ++     |+++|++++.+++.++++++||. .|... ++++|+++.|++|..|..|++-....  ...|.++|.|++-..
T Consensus       186 ~~~~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlN  264 (496)
T COG1003         186 CDENGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVHLN  264 (496)
T ss_pred             cCCCCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEEee
Confidence            85     99999999999999999999988 56664 79999999999999999999976544  336788999999999


Q ss_pred             cccccccCCC
Q 016612          198 ATKFIAGHSD  207 (386)
Q Consensus       198 ~sK~~~g~~g  207 (386)
                      +||+|+.|.|
T Consensus       265 LHKTF~iPHG  274 (496)
T COG1003         265 LHKTFCIPHG  274 (496)
T ss_pred             cccccccCCC
Confidence            9999965543

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.30  E-value=1.3e-10  Score=110.20  Aligned_cols=179  Identities=15%  Similarity=0.167  Sum_probs=101.7

Q ss_pred             HHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc-----CCCCC--CccE
Q 016612          129 LDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLEL--GADI  193 (386)
Q Consensus       129 ~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~--~~di  193 (386)
                      ++++++.+.   +++.+|+++......|.+.+    +++|.++|++||+++|+||++. .+...     .....  .+|+
T Consensus       238 l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi  317 (464)
T TIGR00699       238 LEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDM  317 (464)
T ss_pred             HHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCE
Confidence            455666663   46899999999888888876    9999999999999999999974 22211     11122  3888


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCC
Q 016612          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       194 ~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      ++  ++|.+++     +|+++.+ +.+.. ............++...++....++.+.  .+...++++.+.+++.+.-.
T Consensus       318 ~t--~gK~lg~-----gG~~~~~-~~~~~-~~~~~~~~T~~gnp~~~aaa~a~L~~l~--~~~l~~~~~~~g~~l~~~L~  386 (464)
T TIGR00699       318 VT--FSKKFQT-----AGYFFHD-PAFRP-NKPYRQFNTWMGDPSRALILREIIQEIK--RKDLLENVAHVGDYLYTGLE  386 (464)
T ss_pred             EE--ehhhhcc-----CCccccc-hhccC-CCCcccccCCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHH
Confidence            65  5999842     1333332 21110 0111122223345555555555554332  23344555444444432110


Q ss_pred             cceEecCCCCCCCchhhhhhccC--CCCceEEEEeCCHHhHHHHHhhcCcceeccC
Q 016612          274 VKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLTGSLALSKHVVETTKYFSITVS  327 (386)
Q Consensus       274 ~~~~~~~~l~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~  327 (386)
                        . +.   ..++.   ...+.+  +.|.++.+.+++......+.+.+..+|+.+.
T Consensus       387 --~-l~---~~~~~---~i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~  433 (464)
T TIGR00699       387 --D-LQ---KKYPE---FIQNLRGKGRGTFIAWDTPDEAKRDKLLKKARNNGVNIG  433 (464)
T ss_pred             --H-HH---HhCCC---ceeeecccCeEEEEEEecCCHHHHHHHHHHHHHCCcEEe
Confidence              0 00   00110   001114  6789999998776667788888888888654

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.28  E-value=4.9e-10  Score=95.84  Aligned_cols=251  Identities=24%  Similarity=0.300  Sum_probs=155.5

Q ss_pred             hHHHHHHHHHhhcCCCceEE---eCcHHHHHH-HHHHhcCCCCEEEec-CCCCCcHHHHH------hhhcccCCcEEEEe
Q 016612           56 TRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAG-DDLYGGTDRLL------SRVTPKTGVVVKRV  124 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~---~~~gt~al~-~~~~~~~~g~~Vlv~-~~~~~~~~~~~------~~~~~~~g~~~~~v  124 (386)
                      .|+.+++-.++.+|.+..++   +.|||+|+. ++..+++|||+.+.. ..-|.....++      ...++.+|+.+..+
T Consensus        66 GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v  145 (416)
T COG4100          66 GRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAV  145 (416)
T ss_pred             chhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeec
Confidence            58899999999999996544   578999997 678899999998743 22243332221      12345677788888


Q ss_pred             CCC-----CHHHHHhhhCCCceEEEEe----CCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCc-cCCCCCCcc
Q 016612          125 NTC-----DLDEVASAIGPWTKLVWVE----SPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVL-SRPLELGAD  192 (386)
Q Consensus       125 ~~~-----d~~~l~~~~~~~~~~v~~~----~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~-~~~~~~~~d  192 (386)
                      +..     |.+.+...++++||+|.+.    ....|+=.+.+++++..+.++-  ++++++|.+|+...- ..|...|+|
T Consensus       146 ~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaD  225 (416)
T COG4100         146 PLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHVGAD  225 (416)
T ss_pred             ccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCccccchh
Confidence            864     8999999999999999985    2234554455678888888774  899999999986553 357778999


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCC----CCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Q 016612          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS----GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       193 i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  268 (386)
                      ++.+|+-|.-+|.----+|+++++.+ +.+.........|.    +.+..+...+.+++-....-..+-.+-+.....++
T Consensus       226 liAGSLIKNpGGgiaktGGYiaGk~~-~ve~~~yRlTaPGIG~e~Gat~~~l~~myqGlFlAPhvv~qa~Kga~fta~~l  304 (416)
T COG4100         226 LIAGSLIKNPGGGIAKTGGYIAGKAE-LVEAAAYRLTAPGIGREGGATLYSLREMYQGLFLAPHVVSQAVKGAHFTARFL  304 (416)
T ss_pred             hhccceeeCCCCceeeccceeechHH-HHHhhceeeecCCccccccccHHHHHHHHhhhccchHHHHHHhhhhHHHHHHH
Confidence            99999999876532224788988754 44333222222221    22222223333343332333334445555556666


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  321 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  321 (386)
                      ++..         .+..|.+.     .+..--+-++.+++.+..-.|++...-
T Consensus       305 e~lg---------~~~~P~~~-----~kRtDlIQavkf~~~eKmIaFcqaiQ~  343 (416)
T COG4100         305 EKLG---------FPVNPKYD-----AKRTDLIQAVKFGSKEKMIAFCQAIQA  343 (416)
T ss_pred             HHcC---------CCCCCccc-----ccccchhhheecCCHHHHHHHHHHHhh
Confidence            6543         22222110     011223445666666656566665443

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.26  E-value=1.7e-10  Score=106.12  Aligned_cols=222  Identities=19%  Similarity=0.157  Sum_probs=132.1

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHHh-c-----
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHL-L-----   90 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~~-~-----   90 (386)
                      ...+|.-+|++.++......    ...+..... ..+...++.+.|.+.++  .+...+.+||++|+...+.+ .     
T Consensus        27 ~~~lGh~~p~i~~ai~~~~~----~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~  102 (339)
T PF00202_consen   27 SVNLGHNHPEIAEAIAEQAN----KLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNK  102 (339)
T ss_dssp             TTTT-BT-HHHHHHHHHHHH----HCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             ceecCCCccccchhHHHHhh----hcccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhccccc
Confidence            45578778777664332211    111111111 33578899999999983  34788889999998643332 1     


Q ss_pred             ---CCCCEEEecCCCCCcHH-HHH--------hhhcccCCcEEEEeCCCCHHH----------HH----hhhCCCceEEE
Q 016612           91 ---GTGEEIVAGDDLYGGTD-RLL--------SRVTPKTGVVVKRVNTCDLDE----------VA----SAIGPWTKLVW  144 (386)
Q Consensus        91 ---~~g~~Vlv~~~~~~~~~-~~~--------~~~~~~~g~~~~~v~~~d~~~----------l~----~~~~~~~~~v~  144 (386)
                         ....+|+.....|++.. ..+        +.........+..+|..++..          ++    +.-.+++.+|+
T Consensus       103 ~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi  182 (339)
T PF00202_consen  103 RAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVI  182 (339)
T ss_dssp             THHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred             ccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEE
Confidence               23467887777776532 111        111222223456677666554          22    22246789999


Q ss_pred             EeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEE
Q 016612          145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLA  214 (386)
Q Consensus       145 ~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~  214 (386)
                      ++......|...+    +++|.++|++||+++|+||++.. +-..     ......+|+++.  +|.+++  |+..+.++
T Consensus       183 vEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~--gK~l~g--G~p~sav~  258 (339)
T PF00202_consen  183 VEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTF--GKGLGG--GLPISAVL  258 (339)
T ss_dssp             EESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEE--EGGGGT--TSSEEEEE
T ss_pred             EeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCccccc--ccchhh--hhhccccc
Confidence            9998877777753    89999999999999999999863 2222     122356799876  699976  36688888


Q ss_pred             EcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH
Q 016612          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM  250 (386)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (386)
                      ++ +++.+.+...........++....++...++.+
T Consensus       259 ~~-~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~  293 (339)
T PF00202_consen  259 GS-EEIMEAFQPGSHGSTFGGNPLSCAAALATLEIL  293 (339)
T ss_dssp             EE-HHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHH
T ss_pred             cc-chhhccccccccccccccchHhhhhhhhHHHhh
Confidence            87 445543322222233345566666665555443

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.24  E-value=1e-09  Score=97.31  Aligned_cols=177  Identities=18%  Similarity=0.180  Sum_probs=112.2

Q ss_pred             CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC----CCccCCCCC--CccEEEeccccccccCCC
Q 016612          138 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS----PVLSRPLEL--GADIVMHSATKFIAGHSD  207 (386)
Q Consensus       138 ~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~----~~~~~~~~~--~~di~~~S~sK~~~g~~g  207 (386)
                      +.+.+++.+..+...|.+.+    +++..++|+++|.++|.||+++.    |++......  -.||+  |++|.++.  |
T Consensus       211 ~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIv--TmAKgiGn--G  286 (442)
T KOG1404|consen  211 ETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIV--TMAKGIGN--G  286 (442)
T ss_pred             CceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHH--HHHhhccC--C
Confidence            46778888999887777753    89999999999999999999862    333322222  34676  68999964  3


Q ss_pred             ceEEEEEEcChhHHHHHHHhh-hhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCC
Q 016612          208 VMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  286 (386)
Q Consensus       208 ~~~G~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  286 (386)
                      .-.|.++.. +++.+.+.... ....-+..+..++.....++.  .+.+.+++++..+..++.+.-.   .+.+..+   
T Consensus       287 ~Pl~AVvtt-~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~V--ikee~LqE~aa~vG~yl~~~l~---~l~d~h~---  357 (442)
T KOG1404|consen  287 FPLGAVVTT-PEIADVLNQKSSHFNTYGGNPVACAVGLAVLKV--IKEENLQENAAEVGSYLLEKLA---ALKDKHP---  357 (442)
T ss_pred             CcceeeecC-HHHHHHHHhccccccccCCCchhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHH---HHhhcCC---
Confidence            557888776 56776664443 333334555555555555543  3446788888888877765321   0111111   


Q ss_pred             chhhhhhccCCCCceEEEEe-CC--------HHhHHHHHhhcCcceeccCCCCc
Q 016612          287 GHELHYSQAKGAGSVLSFLT-GS--------LALSKHVVETTKYFSITVSFGSV  331 (386)
Q Consensus       287 ~~~i~~~~~~~~~~~~~~~~-~~--------~~~~~~l~~~l~~~gi~~~~G~~  331 (386)
                          ...+-+++|.|+.+++ ++        ......+.+.+++.|+.+.-|+.
T Consensus       358 ----iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i  407 (442)
T KOG1404|consen  358 ----IIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGI  407 (442)
T ss_pred             ----ceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccc
Confidence                1123377888888876 11        22344677777888887755554

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.20  E-value=1.4e-09  Score=105.84  Aligned_cols=212  Identities=17%  Similarity=0.147  Sum_probs=140.4

Q ss_pred             CchHHHHHHHHHhhcCCC--ceEEeCcHHHH-HHHHHHh--cC-------C-----------------------------
Q 016612           54 NPTRDALESLLAKLDKAD--RALCFTSGMAA-LAAVTHL--LG-------T-----------------------------   92 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~--~~i~~~~gt~a-l~~~~~~--~~-------~-----------------------------   92 (386)
                      ..+-.++-+++++++|.+  ...++++||.| +.++...  .+       .                             
T Consensus       122 t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~  201 (608)
T TIGR03811       122 SQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESA  201 (608)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccccccccccc
Confidence            346677888999999876  46889999966 4444321  10       0                             


Q ss_pred             --------------CC------EEEecCCCCCcHHHHHhhhcccCCc---EEEEeCCC-----CHHHHHhhhC----C--
Q 016612           93 --------------GE------EIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----P--  138 (386)
Q Consensus        93 --------------g~------~Vlv~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~~~----~--  138 (386)
                                    |.      .++++...|.++.    +.+...|+   .++.|+.+     |+++|++.+.    +  
T Consensus       202 ~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~----KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~  277 (608)
T TIGR03811       202 GDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWL----KAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKT  277 (608)
T ss_pred             ccchhhhhhhccccccccccceEEEECCCccHHHH----HHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCC
Confidence                          00      5778888888885    55556666   46666653     8899988775    2  


Q ss_pred             CceEEEEeCCCCCCcccccHHHHHHHH---HHcCC--EEEEeCCCCCCC---ccC------C------------------
Q 016612          139 WTKLVWVESPTNPRQQICDIRKIAEMA---HAHGA--LLLVDNSIMSPV---LSR------P------------------  186 (386)
Q Consensus       139 ~~~~v~~~~~~nptG~~~~l~~i~~la---~~~~~--~li~D~a~~~~~---~~~------~------------------  186 (386)
                      .+-+|+.+..+..+|.+.|+++|+++|   +++|+  ++++|+||+...   +.+      +                  
T Consensus       278 p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~  357 (608)
T TIGR03811       278 PILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKK  357 (608)
T ss_pred             CeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccccccccccc
Confidence            244567778888999999999999999   66887  699999998532   111      0                  


Q ss_pred             ------------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh----h-------------cCC--CC
Q 016612          187 ------------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN----A-------------EGS--GL  235 (386)
Q Consensus       187 ------------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~----~-------------~~~--~~  235 (386)
                                  .-..+|-++.++||++..|-+  +|+++.+++.+.+.+.....    .             .++  +.
T Consensus       358 ~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~--~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga  435 (608)
T TIGR03811       358 EYISREVYNAYKAISEAESVTIDPHKMGYIPYS--AGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGA  435 (608)
T ss_pred             ccccHhHHHHHhcCcCceEEEeCcccccccCCC--eEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccH
Confidence                        002579999999999987765  88888888765443321100    0             011  11


Q ss_pred             ChhhHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHhhC
Q 016612          236 APFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASH  271 (386)
Q Consensus       236 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~  271 (386)
                      .....|+..+.+    +.+...+++..+.++.+.+.+++.
T Consensus       436 ~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       436 TAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            123444444433    356666777778888888888764

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.18  E-value=6.7e-10  Score=111.70  Aligned_cols=176  Identities=13%  Similarity=0.132  Sum_probs=101.8

Q ss_pred             CCceEEEEeCC-CCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC----CCcc--CCCCCCccEEEeccccccccCC
Q 016612          138 PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS----PVLS--RPLELGADIVMHSATKFIAGHS  206 (386)
Q Consensus       138 ~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~----~~~~--~~~~~~~di~~~S~sK~~~g~~  206 (386)
                      +++.+|+++.. +.-.|.+.+    ++.|.++|++||+++|.||++..    |...  +.....+||++.  +|.++|  
T Consensus       583 ~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~--gKgLtg--  658 (817)
T PLN02974        583 GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACY--AKLLTG--  658 (817)
T ss_pred             CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEee--cccccC--
Confidence            46889999985 676677764    89999999999999999999752    2221  122345799874  999875  


Q ss_pred             C-ceEEEEEEcChhHHHHHHH------hhhhcCCCCChhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHHhhCCCcceE
Q 016612          207 D-VMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLASHPRVKKV  277 (386)
Q Consensus       207 g-~~~G~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~  277 (386)
                      | +-+|.++++ +++.+.+..      +......+.++..+++++..++.+...  .+...++.+.+..++.+.-     
T Consensus       659 G~~Plaa~l~~-~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l-----  732 (817)
T PLN02974        659 GLVPLAATLAT-EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEEL-----  732 (817)
T ss_pred             CCCccEEEEEc-HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH-----
Confidence            4 346777776 556654421      112223355666666666655543221  1233344444443333210     


Q ss_pred             ecCCCCCCCchhhhhhccCCCCceEEEEeCC--------HHhHHHHHhhcC-cceeccCC
Q 016612          278 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------LALSKHVVETTK-YFSITVSF  328 (386)
Q Consensus       278 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~-~~gi~~~~  328 (386)
                       ...+.+++.+    .+.++.|.++.+.+.+        .....++.+.+. .+|+.+++
T Consensus       733 -~~~l~~~p~V----~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~  787 (817)
T PLN02974        733 -VRAISSLPNV----ERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARP  787 (817)
T ss_pred             -HHHHhhCCCe----eEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEe
Confidence             0001111111    1225678888888732        123456666666 67776554

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.18  E-value=2e-09  Score=102.35  Aligned_cols=161  Identities=17%  Similarity=0.163  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhhcC-CCceEEeCcHHHHHHHHHHh---cCCCCEEEec-CCCCCcHHHHHh-hhcccCCc------EEEEe
Q 016612           57 RDALESLLAKLDK-ADRALCFTSGMAALAAVTHL---LGTGEEIVAG-DDLYGGTDRLLS-RVTPKTGV------VVKRV  124 (386)
Q Consensus        57 ~~~l~~~l~~~~g-~~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~-~~~~~~~~~~~~-~~~~~~g~------~~~~v  124 (386)
                      ..++.+.+.+++. .+...+++||++|+.+.+.+   .....+|+.. ...|++...... ......+.      .+..+
T Consensus        90 ~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~  169 (431)
T PRK06209         90 ELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF  169 (431)
T ss_pred             HHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcccccc
Confidence            3456667777663 45778889999998643332   2223445543 223322110000 00001111      13344


Q ss_pred             CCCCHHHHHhhhC---CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC------CCCCCccEEE
Q 016612          125 NTCDLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR------PLELGADIVM  195 (386)
Q Consensus       125 ~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~------~~~~~~di~~  195 (386)
                      +..|++++++.+.   +++.+|+++......+....+++|.++|++||+++|+||++. |....      .....+|++ 
T Consensus       170 ~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~~~~g~~~~~gv~PDi~-  247 (431)
T PRK06209        170 RYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFRWHMRGAQKLYGIVPDLS-  247 (431)
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCcCcchhhHHhCCCccee-
Confidence            5568999998874   467788888765432222349999999999999999999974 32111      122346775 


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHH
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERLAKE  223 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~~~~  223 (386)
                       +++|.+++  |+.+|+++++ +++.+.
T Consensus       248 -t~gK~lgg--G~p~~av~~~-~~i~~~  271 (431)
T PRK06209        248 -CFGKALGN--GFAVSALAGK-REYMEL  271 (431)
T ss_pred             -eehhhhcC--CcccEEEEEH-HHHHhh
Confidence             46999975  3557888886 445543

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.08  E-value=6.4e-09  Score=94.46  Aligned_cols=277  Identities=16%  Similarity=0.205  Sum_probs=168.1

Q ss_pred             hHHHHHHHHHhhcCCC-c--eEEeCcHHHH-HHHHHH---hc-C-CC---CEEEecCCCCCcHHHHHhhhcccCCcEEEE
Q 016612           56 TRDALESLLAKLDKAD-R--ALCFTSGMAA-LAAVTH---LL-G-TG---EEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~--~i~~~~gt~a-l~~~~~---~~-~-~g---~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (386)
                      +..++-..++.+++.+ +  ...+++||++ +.+...   .. . +|   ..++++...|    ..|.+.++.+++++..
T Consensus       121 ~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~----~a~eK~a~yf~v~l~~  196 (491)
T KOG1383|consen  121 LEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVH----AAFEKAARYFEVELRE  196 (491)
T ss_pred             HHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHH----HHHHHHHhhEEEEEEe
Confidence            3455666777887665 2  3456667766 333222   11 1 12   2334444343    3356888899999999


Q ss_pred             eCCC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHH-cCCEEEEeCCCCCCCcc----CC--CC--
Q 016612          124 VNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLS----RP--LE--  188 (386)
Q Consensus       124 v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~-~~~~li~D~a~~~~~~~----~~--~~--  188 (386)
                      ++.+      |+.++.+.++++|..++.+.|+.|+|.+.|+++|.++..+ +++.+++|.+.+....+    ..  .+  
T Consensus       197 V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr  276 (491)
T KOG1383|consen  197 VPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFR  276 (491)
T ss_pred             eeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccC
Confidence            9875      8999999999999999999999999999999999999999 99999999997643331    11  11  


Q ss_pred             -CCccEEEeccccccccCCCceEEEEEEcChhHH-HHHHHhhhhc----------C--CCCChhhHHHHH--hcCCcHHH
Q 016612          189 -LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAE----------G--SGLAPFDCWICL--RGVKTMAL  252 (386)
Q Consensus       189 -~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~-~~~~~~~~~~----------~--~~~~~~~~~~~~--~~~~~~~~  252 (386)
                       .+..-...+.||+-..|.|  .+|++-+++++. ..+.......          +  .+..-..+|+.+  .+.+.+..
T Consensus       277 ~p~V~Sisa~~HKYGl~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~  354 (491)
T KOG1383|consen  277 VPGVTSISADGHKYGLAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRE  354 (491)
T ss_pred             CCCceeEeeccceeeeeecC--cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHH
Confidence             2345566789998888888  466555555442 2211111111          1  111223344433  24445555


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe--CCHHhHHHHHhhcCcceeccCCCC
Q 016612          253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT--GSLALSKHVVETTKYFSITVSFGS  330 (386)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~gi~~~~G~  330 (386)
                      ..++..++++.+++.+++.+              ++.++.+      +.++|..  .+.-...++-+.+...|+..+.  
T Consensus       355 ~~~~ive~~~~l~egie~i~--------------~i~i~gk------p~vs~~~~~s~~~~i~elsd~l~~~GW~lna--  412 (491)
T KOG1383|consen  355 NTQNIVETARKLREGIENIK--------------GIKIVGK------PLVSFILFGSNDVNIFELSDLLRKKGWILNA--  412 (491)
T ss_pred             HHHHHHHHHHHHHHhhhccc--------------cceecCC------CcEEEEEccCCccchhhhhHHHHhcCcCccc--
Confidence            56666677777666666543              3333322      3355544  1222355677777777775443  


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-----cCChHHHHHHHHHHHhcC
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i~~l~~~l~~~  384 (386)
                          +.+|.                    .+-+++.     .+-.++++..++++++++
T Consensus       413 ----lq~P~--------------------a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el  447 (491)
T KOG1383|consen  413 ----LQFPA--------------------AIHICVTRVHAREDVADRFVADIRKVVEEL  447 (491)
T ss_pred             ----cCCCC--------------------ceEEEEEeeeccHHHHHHHHHHHHHHHHHH
Confidence                22232                    1444443     233588888888887653

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.07  E-value=8.2e-09  Score=103.56  Aligned_cols=190  Identities=19%  Similarity=0.213  Sum_probs=129.8

Q ss_pred             eeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC------CC-chHHHHHHHHHhhcCCC--ceEEeCcHHHHH
Q 016612           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GN-PTRDALESLLAKLDKAD--RALCFTSGMAAL   83 (386)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~-~~~~~l~~~l~~~~g~~--~~i~~~~gt~al   83 (386)
                      ..++= +.++++..-|++.+......+    .-...|.++      |. ...-+.+..+++++|.+  +.-+...+|++-
T Consensus        80 ~~~fi-G~G~y~~~~P~vi~~~i~~~~----~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~a  154 (954)
T PRK12566         80 WTSLI-GMGYHGTVTPTVILRNVLENP----GWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAA  154 (954)
T ss_pred             ccccc-cccccCCcCcHHHHHHHHhCc----hhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHH
Confidence            33443 566777766665532222221    112234443      21 23455678899999998  667777776443


Q ss_pred             H-HHHH--hcC-CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHH
Q 016612           84 A-AVTH--LLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (386)
Q Consensus        84 ~-~~~~--~~~-~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~  159 (386)
                      . ++++  ..+ +..+|+|++..|+.+..+++..++..|++++.      +++++.+++++..+++.+|+. .|.+.|++
T Consensus       155 EA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~~~~~~~~~~~~v~vq~P~~-~G~i~d~~  227 (954)
T PRK12566        155 EAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DAVDNLAAHAVFGALLQYPDT-HGEIRDLR  227 (954)
T ss_pred             HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cchhhcCCCCEEEEEEECCCC-ceEEccHH
Confidence            3 2223  222 25689999999999988888889999999875      345555666789999999986 79999999


Q ss_pred             HHHHHHHHcCCEEEEeCC--CCCCCccCCCCCCccEEEecccc-----ccccCCCceEEEEEEcCh
Q 016612          160 KIAEMAHAHGALLLVDNS--IMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a--~~~~~~~~~~~~~~di~~~S~sK-----~~~g~~g~~~G~i~~~~~  218 (386)
                      +|.+++|++|.++++ .+  .+.+.+..|.++|+||++++..-     .|+||.   .|++.++++
T Consensus       228 ~i~~~~h~~gal~~~-~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~---ag~~a~~~~  289 (954)
T PRK12566        228 PLIDQLHGQQALACV-AADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPH---AAYFACRDD  289 (954)
T ss_pred             HHHHHHHHcCCEEEE-EeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCC---eeeeeehHH
Confidence            999999999988663 33  34556677889999999987443     555554   799998854

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=99.05  E-value=1.4e-07  Score=81.52  Aligned_cols=291  Identities=17%  Similarity=0.208  Sum_probs=170.6

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC-------c--eEEeCcHHHHHHHH---HHhcCCCCEEEecCCCCCcHHHHHh
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD-------R--ALCFTSGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLS  111 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~-------~--~i~~~~gt~al~~~---~~~~~~g~~Vlv~~~~~~~~~~~~~  111 (386)
                      .+.|-+- |.+ .+.+..+.+   +|.+       .  .+-.-|||.|+.+.   ++..-+...|.+++|+|..+.    
T Consensus        67 NHEYLpi~Gl~~F~~~A~el~---lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~----  139 (410)
T KOG1412|consen   67 NHEYLPILGLPTFTKAATELL---LGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHH----  139 (410)
T ss_pred             cchhccccCchhhhhhhHHHh---cCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHH----
Confidence            3456665 776 444444443   3432       1  35566888887533   332223567999999998875    


Q ss_pred             hhcccCCc----EEEEeCCC----CHHHHHhhhC--CCceEEEEeCC-CCCCccccc---HHHHHHHHHHcCCEEEEeCC
Q 016612          112 RVTPKTGV----VVKRVNTC----DLDEVASAIG--PWTKLVWVESP-TNPRQQICD---IRKIAEMAHAHGALLLVDNS  177 (386)
Q Consensus       112 ~~~~~~g~----~~~~v~~~----d~~~l~~~~~--~~~~~v~~~~~-~nptG~~~~---l~~i~~la~~~~~~li~D~a  177 (386)
                      .+++..|.    ...+++..    |.+.+...+.  +.-..+++..+ +||||.-.-   ++.|++..++.+.+.+.|-+
T Consensus       140 ~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiA  219 (410)
T KOG1412|consen  140 AIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIA  219 (410)
T ss_pred             HHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehh
Confidence            55567773    23333332    7777777776  33345555555 999998763   77888888899999999999


Q ss_pred             CCCCCccCCCC----------CCc-cEEEeccccccccCCCceEEEE--EEcChhHHH----HHHHhhhhcCCCCChhhH
Q 016612          178 IMSPVLSRPLE----------LGA-DIVMHSATKFIAGHSDVMAGVL--AVKGERLAK----ELYFLQNAEGSGLAPFDC  240 (386)
Q Consensus       178 ~~~~~~~~~~~----------~~~-di~~~S~sK~~~g~~g~~~G~i--~~~~~~~~~----~~~~~~~~~~~~~~~~~~  240 (386)
                      |......++..          .|. -+++.||+|.+ |.-+-|.|-+  +.+++....    .+..+.+..-++.+...+
T Consensus       220 YQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNf-GlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGA  298 (410)
T KOG1412|consen  220 YQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNF-GLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGA  298 (410)
T ss_pred             hcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhc-ccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhh
Confidence            86444433321          122 48999999998 4445577764  344444332    233334444445555555


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCC-cceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhc
Q 016612          241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  319 (386)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  319 (386)
                      ......+.. .++.+++....+.+..++.+-+. +++.+ ..|.. ||.   |+....+.+||++.=-.+...+.+.++.
T Consensus       299 rIV~kvL~t-P~lre~W~~sik~MssRI~~MR~aLrd~L-~aL~T-PGt---WDHI~~QiGMFSyTGLtp~qV~~li~~h  372 (410)
T KOG1412|consen  299 RIVHKVLST-PELREQWIQSIKTMSSRIKKMRTALRDHL-VALKT-PGT---WDHITQQIGMFSYTGLTPAQVDHLIENH  372 (410)
T ss_pred             HHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC-CCc---HHHHHhhccceeecCCCHHHHHHHHHhc
Confidence            554444443 44555666555555555443221 00000 11221 221   1112346789998865566677888887


Q ss_pred             CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhcC
Q 016612          320 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       320 ~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~~  384 (386)
                      +++-+.                                +  =|||++   ..++|...+++.++++..
T Consensus       373 ~vyLl~--------------------------------~--GRInisGLN~~NveyVAkAIde~Vr~~  406 (410)
T KOG1412|consen  373 KVYLLS--------------------------------D--GRINISGLNMKNVEYVAKAIDETVRAI  406 (410)
T ss_pred             eEEEec--------------------------------C--CcEeeeccccccHHHHHHHHHHHHHhh
Confidence            765331                                1  246653   588999999998888765

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.03  E-value=2.3e-07  Score=81.92  Aligned_cols=283  Identities=19%  Similarity=0.166  Sum_probs=162.4

Q ss_pred             CCchHHHHHHH----HHhhcCCCc-----eEEeCcHHHHH-HHHHHhcCCCCEEE---ecCCCCCcHHHHHhhhcccCCc
Q 016612           53 GNPTRDALESL----LAKLDKADR-----ALCFTSGMAAL-AAVTHLLGTGEEIV---AGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        53 g~~~~~~l~~~----l~~~~g~~~-----~i~~~~gt~al-~~~~~~~~~g~~Vl---v~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      |+....++|..    ..+.|+.+.     .+-.-||+.|. .+-.++++|++.+.   .|+.+|-++-.. ... ++-..
T Consensus        80 Gne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~-T~~-kkISa  157 (477)
T KOG2467|consen   80 GNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQ-TPT-KKISA  157 (477)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccc-cCC-ceeee
Confidence            55556555543    335577661     34456788664 56677999999997   444444322100 111 11111


Q ss_pred             EEEEeC-------C----CCHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC-----CCC
Q 016612          120 VVKRVN-------T----CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPV  182 (386)
Q Consensus       120 ~~~~v~-------~----~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-----~~~  182 (386)
                      .-++++       .    .|-|.|++... -++++|+.-....  ....|.+++.++|.+.|.+++.|.+|-     .+.
T Consensus       158 ~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~SaY--~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~v  235 (477)
T KOG2467|consen  158 TSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTSAY--SRLIDYARFRKIADKVGAYLMADMAHISGLVAAGV  235 (477)
T ss_pred             eeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccccc--hhhccHHHHHHHHHhcCceeehhhhhHHHHHhccc
Confidence            111211       1    28889987654 4777777433332  355789999999999999999999985     345


Q ss_pred             ccCCCCCCccEEEeccccccccCCCceEEEEEEcCh--h------------HHHHHHHhhh---hcCCCCChh---hHHH
Q 016612          183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--R------------LAKELYFLQN---AEGSGLAPF---DCWI  242 (386)
Q Consensus       183 ~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~--~------------~~~~~~~~~~---~~~~~~~~~---~~~~  242 (386)
                      .++|.+ .+|||+.+.||++-||   |+|.|..++-  .            +.+++.....   .+|......   ..++
T Consensus       236 ipsPFe-y~DiVTTTTHKsLRGP---Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvAL  311 (477)
T KOG2467|consen  236 IPSPFE-YCDIVTTTTHKSLRGP---RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVAL  311 (477)
T ss_pred             CCCccc-ccceeeccccccccCC---cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHH
Confidence            667776 6999999999999877   5688887741  1            1112211111   111111111   1111


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC----CHHhHHHHHhh
Q 016612          243 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----SLALSKHVVET  318 (386)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~l~~~  318 (386)
                      -...-..+.....+..+|++.+.+.|.++.-   .+..+=.              -..++.+.+.    +....+++++.
T Consensus       312 kQa~tpefk~Yq~qV~~Nakala~~l~~~Gy---~lvtgGT--------------DnHlvLvDLr~~G~dGarvE~vle~  374 (477)
T KOG2467|consen  312 KQAMTPEFKEYQKQVLKNAKALASALISRGY---KLVTGGT--------------DNHLVLVDLRPKGVDGARVEKVLEL  374 (477)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHHHHHHHHcCc---eEecCCc--------------cceEEEEeccccCCchHHHHHHHHH
Confidence            1222334677778889999999999987651   1222211              1234555541    23456777776


Q ss_pred             cCcceec-cCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe--------ccCChHHHHHHHHHHHh
Q 016612          319 TKYFSIT-VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--------GIEDVNDLISDLDKALR  382 (386)
Q Consensus       319 l~~~gi~-~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--------~~~~~~~~i~~l~~~l~  382 (386)
                      +.+..-. .-+|....                      +.++.|||+.        ..+|.++..+.|.++++
T Consensus       375 ~~I~~NKNtvpGD~Sa----------------------l~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  375 CHIALNKNTVPGDKSA----------------------LSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             hhhhhcCCcCCCCccc----------------------cCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence            6543221 33444322                      2356689875        23777777777777654

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.98  E-value=8.4e-08  Score=86.00  Aligned_cols=194  Identities=19%  Similarity=0.235  Sum_probs=113.8

Q ss_pred             CCceEEeCcHHHHHHHHHHh----cCCC---C--EEEecCCCCCc-HHHHHhhhc--ccCCc-------EEEEeCCCCHH
Q 016612           70 ADRALCFTSGMAALAAVTHL----LGTG---E--EIVAGDDLYGG-TDRLLSRVT--PKTGV-------VVKRVNTCDLD  130 (386)
Q Consensus        70 ~~~~i~~~~gt~al~~~~~~----~~~g---~--~Vlv~~~~~~~-~~~~~~~~~--~~~g~-------~~~~v~~~d~~  130 (386)
                      .+.+.+..|||+|+..++.+    ...+   +  .++.-+.+|++ +..++ ...  ..++.       +++..+..|..
T Consensus       116 ~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgal-s~~~~s~y~~~~~p~~p~v~~~~ynd~t  194 (433)
T KOG1401|consen  116 AERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGAL-SVTGNSKYGLPFDPIAPDVVTAEYNDST  194 (433)
T ss_pred             ccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHH-HhhcccccCCCCCCCCCceeecccCCHH
Confidence            34678889999997633221    1111   1  36665655544 44333 211  12222       23344445899


Q ss_pred             HHHhhhCC---CceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEec
Q 016612          131 EVASAIGP---WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHS  197 (386)
Q Consensus       131 ~l~~~~~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S  197 (386)
                      ++++.+..   .+.+|+++...-..|.+..    +..|..+|+++|+++|.||++.. +-..     ......+||.+  
T Consensus       195 ~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t--  272 (433)
T KOG1401|consen  195 ALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITT--  272 (433)
T ss_pred             HHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCccee--
Confidence            99998873   4699999999887777652    78899999999999999999863 2221     12234568875  


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHhhh---hcCCCCChhhHHHHHhcCCcH--HHHHHHHHHHHHHHHHHHh
Q 016612          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---AEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLA  269 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~  269 (386)
                      +.|.++|  |+-+|+..++ +.+.+.+..-..   ...-+.++....+....++.+  ....++..+..+.+.+.+.
T Consensus       273 ~aK~L~g--GlPigA~~v~-~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~  346 (433)
T KOG1401|consen  273 VAKPLGG--GLPIGATGVR-DKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLD  346 (433)
T ss_pred             ehhhccC--CceeEEEeeh-HHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            5999975  5778988887 446554433222   222234444444443333322  2223444444444444444

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.95  E-value=4.4e-08  Score=88.62  Aligned_cols=153  Identities=13%  Similarity=0.100  Sum_probs=100.8

Q ss_pred             hhcCCC---ceEEeCcHH-HHHH-HHHHhc--CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--------CHH
Q 016612           66 KLDKAD---RALCFTSGM-AALA-AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLD  130 (386)
Q Consensus        66 ~~~g~~---~~i~~~~gt-~al~-~~~~~~--~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~  130 (386)
                      +..|..   .+++++-.| .++. +++++-  ..++.|+.+.-.|.+.+    ..+...|.+++.++..        |.+
T Consensus        67 ~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~----kai~~AGl~~~vV~~~~~~d~l~td~~  142 (389)
T PF05889_consen   67 RLAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCF----KAIERAGLEPVVVENVLEGDELITDLE  142 (389)
T ss_dssp             HHTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHH----HHHHHTT-EEEEE-EEEETTEEEEHHH
T ss_pred             HHcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchH----HHHHhcCCeEEEeeccCCCCeeeccHH
Confidence            334654   467776655 4454 333332  46788999988887665    5556789998888852        667


Q ss_pred             HHHhhhC---CCceEEEEeCCCCCCccccc-HHHHHHHHHHcCCEEEEeCCCCCCCc------cCCCCC-CccEEEeccc
Q 016612          131 EVASAIG---PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVL------SRPLEL-GADIVMHSAT  199 (386)
Q Consensus       131 ~l~~~~~---~~~~~v~~~~~~nptG~~~~-l~~i~~la~~~~~~li~D~a~~~~~~------~~~~~~-~~di~~~S~s  199 (386)
                      .+++.++   ++..+.++++++...+...| +++|+++|+++|++.++..||+.-..      ...... ..|+++.|+-
T Consensus       143 ~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~d  222 (389)
T PF05889_consen  143 AIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTD  222 (389)
T ss_dssp             HHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecC
Confidence            7776664   46678888888888889887 99999999999999999999985221      111122 3589999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHH
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKEL  224 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~  224 (386)
                      |.|-.|.|  ++.+++.++......
T Consensus       223 kNF~VPvG--gai~As~~~~~i~~v  245 (389)
T PF05889_consen  223 KNFMVPVG--GAIMASFDPSGILAV  245 (389)
T ss_dssp             HHHCEESS--HEEEEESSHHHHHHH
T ss_pred             CCEEecCC--CcEEEecCHHHHHHH
Confidence            99988877  777887776555433

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=98.86  E-value=1.1e-07  Score=83.28  Aligned_cols=237  Identities=15%  Similarity=0.106  Sum_probs=134.7

Q ss_pred             EeCcHHHHHH---HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhC--CCceE
Q 016612           75 CFTSGMAALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG--PWTKL  142 (386)
Q Consensus        75 ~~~~gt~al~---~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~--~~~~~  142 (386)
                      -+-|||.|+.   .+++..-++..|.+|+|+|+.+.    .+.+..|+.+..+..-       |.+.+.+.+.  +.-..
T Consensus       125 Q~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~----~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~  200 (427)
T KOG1411|consen  125 QTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHK----NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSI  200 (427)
T ss_pred             EeccCcchhhHHHHHHHhhccccceeecCCcccccC----ccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcE
Confidence            3457887764   34554556889999999998874    6677888877665532       5555554444  22234


Q ss_pred             EEE-eCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCCCccCCCC----------C-CccEEEeccccccccCCC
Q 016612          143 VWV-ESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE----------L-GADIVMHSATKFIAGHSD  207 (386)
Q Consensus       143 v~~-~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~----------~-~~di~~~S~sK~~~g~~g  207 (386)
                      |++ -..|||||.-.   .+++|.++.++.+.+-+.|.+|......+...          . +..+++.|+.|.++- -|
T Consensus       201 ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGL-Yg  279 (427)
T KOG1411|consen  201 ILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGL-YG  279 (427)
T ss_pred             EEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcch-hh
Confidence            444 36699999875   37889999999999999999986544332211          1 235889999999854 44


Q ss_pred             ceEEEE--EEcChhHHHH----HHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCC
Q 016612          208 VMAGVL--AVKGERLAKE----LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  281 (386)
Q Consensus       208 ~~~G~i--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  281 (386)
                      -|+|.+  ++++.+....    ++.+.+..-++.+-..+.....-+.. .....++....+.+.+.+...+   +.+.+.
T Consensus       280 ERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d-~~l~~~W~~evk~MadRi~~mR---~~L~d~  355 (427)
T KOG1411|consen  280 ERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSD-PDLKNQWLGEVKGMADRIISMR---QQLFDA  355 (427)
T ss_pred             hccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCC-hHHHHHHHHHHHHHHHhhhhhH---HHHhHH
Confidence            577764  6665544332    33333322222222222222222222 2223344444444444444332   222222


Q ss_pred             CCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc
Q 016612          282 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  321 (386)
Q Consensus       282 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  321 (386)
                      |....... -|.....+.+||+|.--+++..+.+..+..+
T Consensus       356 L~~~gs~~-~W~hI~~QIGMF~fTgl~peQv~~l~ke~~i  394 (427)
T KOG1411|consen  356 LEKEGSPG-NWSHITKQIGMFCFTGLNPEQVDWLTKEYHI  394 (427)
T ss_pred             hhcCCCCc-cHHHHHHhhheeeecCCCHHHHHHHHhhhee
Confidence            22111111 1222234678999987666667777776554

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.75  E-value=3.4e-07  Score=82.44  Aligned_cols=228  Identities=14%  Similarity=0.140  Sum_probs=149.0

Q ss_pred             CCCCCCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcHH-HHHHHHHHh---cCC-----C-----CEEE-ecC
Q 016612           41 ATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHL---LGT-----G-----EEIV-AGD  100 (386)
Q Consensus        41 ~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~~~~~~---~~~-----g-----~~Vl-v~~  100 (386)
                      +.+...+-|.-. .-- .-+++-..+.++.|.+   +.|+.++|+ +.++++...   .-|     |     +-|+ +++
T Consensus       125 t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSe  204 (510)
T KOG0629|consen  125 TANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSE  204 (510)
T ss_pred             ccCCCCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecc
Confidence            334444555443 222 3455666677777765   678888887 767765432   111     1     3344 777


Q ss_pred             CCCCcHHHHHhhhcccCC---cEEEEeCCC-----CHHHHHhhhC---CC---ceEEEEeCCCCCCcccccHHHHHHHHH
Q 016612          101 DLYGGTDRLLSRVTPKTG---VVVKRVNTC-----DLDEVASAIG---PW---TKLVWVESPTNPRQQICDIRKIAEMAH  166 (386)
Q Consensus       101 ~~~~~~~~~~~~~~~~~g---~~~~~v~~~-----d~~~l~~~~~---~~---~~~v~~~~~~nptG~~~~l~~i~~la~  166 (386)
                      .+|.+...    .+...|   -.++.|+++     ++++|++.+-   ++   +-.|-.+..+...|...|+..|+++|+
T Consensus       205 esHYSi~k----aAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~  280 (510)
T KOG0629|consen  205 ESHYSIKK----AAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICE  280 (510)
T ss_pred             cchhhHHH----HHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHH
Confidence            78888764    333444   566777765     7899998875   23   445555677778888899999999999


Q ss_pred             HcCCEEEEeCCCCCCCccCCC-------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHH------hh-----
Q 016612          167 AHGALLLVDNSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------LQ-----  228 (386)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~-------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~------~~-----  228 (386)
                      +|++++++|++++.|.+-+..       -..++-+.-+.||+++.|  +.++....+.+-+.+....      ++     
T Consensus       281 k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gap--lqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Y  358 (510)
T KOG0629|consen  281 KHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAP--LQCSAFLTREEGLLQRCNQMSAIYLFQQDKFY  358 (510)
T ss_pred             hcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCc--chhhHHHHHHHHHHHhhcccchhhhhccCcee
Confidence            999999999999887654221       124688899999999765  4577777665543322110      00     


Q ss_pred             ----------hhcCCCCChhhHHHHH--hcCCcHHHHHHHHHHHHHHHHHHHhhCCCc
Q 016612          229 ----------NAEGSGLAPFDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPRV  274 (386)
Q Consensus       229 ----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  274 (386)
                                ...|....-+..|++.  .+...+....+...++++.+.+.++++...
T Consensus       359 dvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~  416 (510)
T KOG0629|consen  359 DVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGF  416 (510)
T ss_pred             ecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                      0112344556667764  456677888888889999999999987653

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.74  E-value=1.1e-06  Score=80.14  Aligned_cols=253  Identities=16%  Similarity=0.213  Sum_probs=140.7

Q ss_pred             cccCCCCchHHHHH----HHHHhhcCCC-----------ceEEeCcHHHHH-HHHHHh-------cCCC-----------
Q 016612           48 DYTRSGNPTRDALE----SLLAKLDKAD-----------RALCFTSGMAAL-AAVTHL-------LGTG-----------   93 (386)
Q Consensus        48 ~y~~~g~~~~~~l~----~~l~~~~g~~-----------~~i~~~~gt~al-~~~~~~-------~~~g-----------   93 (386)
                      +++....|...++|    +|++++.+.+           -.++.++.+++. -++++.       ++.+           
T Consensus       102 GFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~  181 (511)
T KOG0628|consen  102 GFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLA  181 (511)
T ss_pred             cceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhh
Confidence            33444445555555    6666655432           367777777664 344331       2222           


Q ss_pred             C-EEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhCCC-----ceEEEE-eCCCCCCcccccHHHH
Q 016612           94 E-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPW-----TKLVWV-ESPTNPRQQICDIRKI  161 (386)
Q Consensus        94 ~-~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~~~-----~~~v~~-~~~~nptG~~~~l~~i  161 (386)
                      + .+..++..|.+..    +.+...+++++.++.+     +.+.|++++.++     +..+++ +-.+.-+-...++.+|
T Consensus       182 ~lV~Y~SDqahssve----ka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~el  257 (511)
T KOG0628|consen  182 RLVAYCSDQAHSSVE----KACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEEL  257 (511)
T ss_pred             hheEEecCcccchHH----HhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHh
Confidence            1 3457788888774    6666778888888765     677888887632     223333 3222222233479999


Q ss_pred             HHHHHHcCCEEEEeCCCCCCCccCC----CCC---CccEEEeccccccccCCCceEEEEEEcChh-HHH---------H-
Q 016612          162 AEMAHAHGALLLVDNSIMSPVLSRP----LEL---GADIVMHSATKFIAGHSDVMAGVLAVKGER-LAK---------E-  223 (386)
Q Consensus       162 ~~la~~~~~~li~D~a~~~~~~~~~----~~~---~~di~~~S~sK~~~g~~g~~~G~i~~~~~~-~~~---------~-  223 (386)
                      ..+|+++|+++++|++|+...+..+    +..   .+|-+.+..|||+...-.  +..++.++.. +.+         + 
T Consensus       258 g~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfD--Cs~lWvkd~~~~~~~~~vdp~yL~h  335 (511)
T KOG0628|consen  258 GPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFD--CSPLWVKDGTKLSRAFNVDPLYLKH  335 (511)
T ss_pred             cchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeee--eecceeecCceeeeeeecChHhhcc
Confidence            9999999999999999986654422    111   358888999998865443  4555555441 100         0 


Q ss_pred             --------HHHhhhhcCCCCChhhHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhh
Q 016612          224 --------LYFLQNAEGSGLAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  293 (386)
Q Consensus       224 --------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~  293 (386)
                              ++.++...+...-....|..++.  .+.+..++++..+.++...+.+.+-+.. ++..              
T Consensus       336 ~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~F-E~~~--------------  400 (511)
T KOG0628|consen  336 AYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRF-EIVN--------------  400 (511)
T ss_pred             hhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeec--------------
Confidence                    11122222333333444554442  2334444444444444444444433211 1100              


Q ss_pred             ccCCCCceEEEEe-CCHHhHHHHHhhcCcce
Q 016612          294 QAKGAGSVLSFLT-GSLALSKHVVETTKYFS  323 (386)
Q Consensus       294 ~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~g  323 (386)
                        +..-++++|++ ++....+++++++...|
T Consensus       401 --~~~lgLvcFRlk~~N~~ne~Ll~~in~~g  429 (511)
T KOG0628|consen  401 --KRILGLVCFRLKGDNEINEALLNRLNSSG  429 (511)
T ss_pred             --ccccceeEEeecCCcHHHHHHHHHHHhcC
Confidence              11236789988 44456778888776544

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.73  E-value=7.1e-07  Score=84.29  Aligned_cols=149  Identities=21%  Similarity=0.250  Sum_probs=111.7

Q ss_pred             CCc-hHHHHHHHHHhhcCCCceEE-eCcHHHH----HHHHHHhc-CCCC----EEEecCCCCCcHHHHHhhhcccCCcEE
Q 016612           53 GNP-TRDALESLLAKLDKADRALC-FTSGMAA----LAAVTHLL-GTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (386)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~~~i~-~~~gt~a----l~~~~~~~-~~g~----~Vlv~~~~~~~~~~~~~~~~~~~g~~~  121 (386)
                      |.. +..+++++|++++|.|...+ -+||+++    +.++.+.+ .+|+    ..++|-..|+...    ..+.-.|.++
T Consensus       579 GY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNP----ASA~Magmkv  654 (1001)
T KOG2040|consen  579 GYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNP----ASAAMAGMKV  654 (1001)
T ss_pred             hHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCCh----hhHHhcCCEE
Confidence            443 67889999999999996544 4667644    44555543 3443    4577777887764    5566789999


Q ss_pred             EEeCCC-----CHHHHHhhhC---CCceEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEeCCCCCCC--ccCCCCCC
Q 016612          122 KRVNTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELG  190 (386)
Q Consensus       122 ~~v~~~-----d~~~l~~~~~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~  190 (386)
                      +.|.++     |..+|.++..   ++-.+++++.|+.. |... .++++.++.++||..+..|++-....  +-++.+.|
T Consensus       655 vpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~-GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~G  733 (1001)
T KOG2040|consen  655 VPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPSTH-GVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIG  733 (1001)
T ss_pred             EEeeccCCCCccHHHHHHHHHHhhhhhheeEEeccccc-ccccccHHHHHHHHHhcCCEEEecCCCccceecccCCcccc
Confidence            998875     7777776654   57789999999984 5554 69999999999999999999965432  33577889


Q ss_pred             ccEEEeccccccccCC
Q 016612          191 ADIVMHSATKFIAGHS  206 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~  206 (386)
                      +|+.--.+||+|+-|.
T Consensus       734 aDV~HLNLHKTFcIPH  749 (1001)
T KOG2040|consen  734 ADVCHLNLHKTFCIPH  749 (1001)
T ss_pred             ccceeecccceeeecC
Confidence            9999999999886443

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.73  E-value=1.9e-06  Score=76.17  Aligned_cols=213  Identities=18%  Similarity=0.109  Sum_probs=127.6

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH-h-----cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-L-----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~-~-----~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
                      |+.....+++.+.+++|.+..+.+.-|..|=+.+.. +     ..||.+.++++..|+.+-+.   -.+..|..++.+..
T Consensus        77 gsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~---h~~~ng~~~~n~~~  153 (471)
T COG3033          77 GSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRG---HIQINGATPRNVYV  153 (471)
T ss_pred             ccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhH---HHHhcCCccccccc
Confidence            444567888999999999888888888755332222 2     34666666666777666432   23455555444332


Q ss_pred             C---------------CHHHHHhhhC----CCceEEEEeCCCCCCcccc----cHHHHHHHHHHcCCEEEEeCCCC-CC-
Q 016612          127 C---------------DLDEVASAIG----PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SP-  181 (386)
Q Consensus       127 ~---------------d~~~l~~~~~----~~~~~v~~~~~~nptG~~~----~l~~i~~la~~~~~~li~D~a~~-~~-  181 (386)
                      +               |++.|++.++    +++..|+++-.+|..|.-.    +++++.++|++|++.++.|.+.. .. 
T Consensus       154 ~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENa  233 (471)
T COG3033         154 DEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENA  233 (471)
T ss_pred             cccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhh
Confidence            1               8899999887    5677888776666555442    58999999999999999999942 11 


Q ss_pred             CccCCC----------------CCCccEEEeccccccccCCCceEEEEEEcChh---HHHHHHHhhhhc-----CCCCCh
Q 016612          182 VLSRPL----------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER---LAKELYFLQNAE-----GSGLAP  237 (386)
Q Consensus       182 ~~~~~~----------------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~---~~~~~~~~~~~~-----~~~~~~  237 (386)
                      ++....                -..+|-.++|.-|--..+   ++|++..+++.   +...++......     -.+++.
T Consensus       234 YFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvn---mGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~G  310 (471)
T COG3033         234 YFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVN---MGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAG  310 (471)
T ss_pred             hhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceec---cccEEEecCccHHHHHHHHHhheEeeccccccCcccc
Confidence            111110                124688999999964343   47999999874   333333322111     112333


Q ss_pred             hhHHHHHhcCCcH--HHHHHHHHHHHHHHHHHHhhC
Q 016612          238 FDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (386)
Q Consensus       238 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~  271 (386)
                      -...++..++..-  ...+....+..+.|.+.|.+.
T Consensus       311 rdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~  346 (471)
T COG3033         311 RDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA  346 (471)
T ss_pred             hhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            2222222222210  222334456666777777765

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.59  E-value=1.6e-06  Score=74.99  Aligned_cols=157  Identities=14%  Similarity=0.153  Sum_probs=109.1

Q ss_pred             HHHHHHhhcCCC-ceEEe-CcHHHHHH-HHHHhcCC---CCEEEecCCCCCcHHHHHhhhcccCCcEEE----EeCCC--
Q 016612           60 LESLLAKLDKAD-RALCF-TSGMAALA-AVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVK----RVNTC--  127 (386)
Q Consensus        60 l~~~l~~~~g~~-~~i~~-~~gt~al~-~~~~~~~~---g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~----~v~~~--  127 (386)
                      +-..++.+.|+. +++.+ ++=|..++ ++.++.+|   .-+|+...-.|++-..++.+.++..|+.+.    .+.+.  
T Consensus       116 il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREG  195 (465)
T KOG3846|consen  116 ILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREG  195 (465)
T ss_pred             hhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEeccccc
Confidence            334455555654 34433 33355566 44556665   456888888888877777888888887532    22221  


Q ss_pred             ----CHHHHHhhhC---CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC-CCCCCccEEEeccc
Q 016612          128 ----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSAT  199 (386)
Q Consensus       128 ----d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~~~di~~~S~s  199 (386)
                          ..+++.+.+.   +...+|+++..+..||..+++.+|...-+..|+++-.|-+++.+-.+- .-++|.|+.|-..+
T Consensus       196 EetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSY  275 (465)
T KOG3846|consen  196 EETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSY  275 (465)
T ss_pred             ccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeee
Confidence                3344544443   578899999999999999999999977777899999999998776542 33679999999999


Q ss_pred             cccccCCCceEEEEEEc
Q 016612          200 KFIAGHSDVMAGVLAVK  216 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~  216 (386)
                      |++...+|-.+|..+..
T Consensus       276 KYlnaGaGgIgGlFvHe  292 (465)
T KOG3846|consen  276 KYLNAGAGGIGGLFVHE  292 (465)
T ss_pred             cccccCCCccceeeeeh
Confidence            99874444456666654

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.54  E-value=1.8e-06  Score=76.03  Aligned_cols=204  Identities=16%  Similarity=0.208  Sum_probs=121.2

Q ss_pred             HHHHHhhhC------CCceEEEEeCCCCCCcccc--c--HHHHHHHHHHcCCEEEEeCCCCCC----CccC----CCCCC
Q 016612          129 LDEVASAIG------PWTKLVWVESPTNPRQQIC--D--IRKIAEMAHAHGALLLVDNSIMSP----VLSR----PLELG  190 (386)
Q Consensus       129 ~~~l~~~~~------~~~~~v~~~~~~nptG~~~--~--l~~i~~la~~~~~~li~D~a~~~~----~~~~----~~~~~  190 (386)
                      ++++++.+.      ..+.+++++..+...|.-.  |  ++.|.+++++||+.+|+||++..+    .+..    .+...
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P  334 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP  334 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence            566666664      2457888888888777664  2  799999999999999999998632    2221    12335


Q ss_pred             ccEEEeccccccccCCCceEEEEEEcChhHH--HHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Q 016612          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLA--KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  268 (386)
                      .|++++  ||-|-.     +|+...  +++.  +..+.+.+   +...+....++....+  ....+.+.++...+.++|
T Consensus       335 pD~vTF--SKK~q~-----gGffh~--~~frpn~pYrifNT---WmGdP~k~lll~~vv~--~I~~~~Ll~n~~~vG~~l  400 (484)
T KOG1405|consen  335 PDVVTF--SKKFQT-----GGFFHD--EEFRPNEPYRIFNT---WMGDPSKNLLLEEVVQ--EIKREDLLNNVAHVGKAL  400 (484)
T ss_pred             ccceeh--hhhhhc-----CccccC--cccCCCchHHHhhh---hcCChHHHHHHHHHHH--HHhHHHHHHHHHHHHHHH
Confidence            688865  676532     365442  2221  12222222   2223333332222222  223356667776666665


Q ss_pred             hhCCCcceEecCCC-CCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCC
Q 016612          269 ASHPRVKKVNYAGL-PEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  347 (386)
Q Consensus       269 ~~~~~~~~~~~~~l-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~  347 (386)
                      .+.-.       .| +..|+.   ....+|+|.+++|.+++....++++..++.+|+.+..  +                
T Consensus       401 ~~gL~-------~Lq~~~p~~---~~~~RGrGTF~a~d~ps~~~Rdk~i~~~~~nGv~~GG--C----------------  452 (484)
T KOG1405|consen  401 LKGLL-------ELQAKYPGK---INNLRGRGTFIAWDCPSGSIRDKLILIARLNGVNLGG--C----------------  452 (484)
T ss_pred             HHHHH-------HHHHhCchh---hhcccccceEEEEeCCChHHHHHHHHHHHHcCceecc--c----------------
Confidence            53210       01 111111   1223678999999999999899999999999886432  2                


Q ss_pred             HHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          348 VEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       348 ~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                               ++.-||+-.+    ..+.+-+++.+.+.|..
T Consensus       453 ---------g~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  453 ---------GDKSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             ---------ccceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence                     1222666554    37777788888877753

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.37  E-value=5.1e-06  Score=71.64  Aligned_cols=283  Identities=17%  Similarity=0.194  Sum_probs=152.4

Q ss_pred             HHHHHHhhcCCCceEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcHHHHHhhh----ccc----CCcEEEEeCC-C
Q 016612           60 LESLLAKLDKADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRV----TPK----TGVVVKRVNT-C  127 (386)
Q Consensus        60 l~~~l~~~~g~~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~~~~~~~~----~~~----~g~~~~~v~~-~  127 (386)
                      .+...+.+-+.+-+++++||++|..+.+++   ..+-..|++.+..|++.....-.+    +..    ..-+.+++.+ .
T Consensus        92 A~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcP  171 (452)
T KOG1403|consen   92 ARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCP  171 (452)
T ss_pred             HHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCc
Confidence            333333444444678889999997654443   233344666666676553211000    000    0112333321 1


Q ss_pred             ---------------C-----HHHHHhhhC------CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCC
Q 016612          128 ---------------D-----LDEVASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNS  177 (386)
Q Consensus       128 ---------------d-----~~~l~~~~~------~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a  177 (386)
                                     |     .+.+++.+.      ..+.+.+.++.++-.|.+.|    .+++++..+.+|.+.|.||+
T Consensus       172 DvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEV  251 (452)
T KOG1403|consen  172 DVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEV  251 (452)
T ss_pred             cccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehh
Confidence                           1     122333322      35566777777887888876    78899999999999999999


Q ss_pred             CCC-CCc----cC--CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh--hhhcCCCCChhhHHHHHhcCC
Q 016612          178 IMS-PVL----SR--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVK  248 (386)
Q Consensus       178 ~~~-~~~----~~--~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  248 (386)
                      +.. |-.    ..  ....-.||++  +.|-++-  |-.++.++.. +++.+.+...  .+....+.++.+.+..+..++
T Consensus       252 QvGFGRvG~hyWafq~y~fiPDIVt--mgKpmGN--GhPVa~Vatt-keIA~Af~atgv~YFNTyGGnPVsCAv~laVm~  326 (452)
T KOG1403|consen  252 QVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMGN--GHPVAAVATT-KEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMR  326 (452)
T ss_pred             hhcccccchhhhhhhhhccccchhe--ecccCCC--CCeeeEEecc-HHHHHHhccccceehhccCCCchhHHHHHHHHH
Confidence            742 222    11  1123468885  5887742  2237888776 5576655331  122223445555655555444


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe--------CCHHhHHHHHhhcC
Q 016612          249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT--------GSLALSKHVVETTK  320 (386)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~l~  320 (386)
                      .  ..-++++++++.+..+|.....-.+...+.+.+          .++-|.++.+.+        ++...+..+..+++
T Consensus       327 v--~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGD----------vRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlk  394 (452)
T KOG1403|consen  327 V--CEDENLQEHAQQVGEKLEVLLRRLKQKHECIGD----------VRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLK  394 (452)
T ss_pred             H--HhhhhHHHHHHHHHHHHHHHHHHHhhhccceec----------cccceEEEeeeeecccccCCCcHHHHHHHHHHHH
Confidence            2  233667778877777666421000111222322          255666666664        34455666666665


Q ss_pred             cc-eec-cCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 016612          321 YF-SIT-VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       321 ~~-gi~-~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                      +. ++. ...|..........                      -++|..++.++.+..|.+.|
T Consensus       395 e~y~VLlsaDGPh~NilKiKP----------------------PmCFneena~e~v~~ld~iL  435 (452)
T KOG1403|consen  395 ELYRVLLSADGPHRNILKIKP----------------------PMCFNEENADEFVLGLDEIL  435 (452)
T ss_pred             HhhhEEEecCCCCCceeecCC----------------------CcccChhhHHHHHHHHHHHH
Confidence            54 344 34455433322110                      05677788888887777665

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.35  E-value=3.2e-05  Score=69.10  Aligned_cols=273  Identities=18%  Similarity=0.170  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeCcHH-HHHH-HHHHhcCCCCE--EEecCCCCCcHHHHHhhhcccCCcEEEEeCC--
Q 016612           56 TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEE--IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--  126 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~gt-~al~-~~~~~~~~g~~--Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--  126 (386)
                      ...+.++.+.++++.+   ++++..+|. .... +.+.++.++..  |..  ..|....   ...++..+..+...+.  
T Consensus        51 v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~--g~Ws~~a---~~eA~~~~~~~~~~~~~~  125 (365)
T COG1932          51 VLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDT--GAWSEFA---IKEAKKVGKQPKLIDARI  125 (365)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEee--eehhHhH---HHHHHHhcccccccccce
Confidence            5778889999999886   355555554 5555 45667765543  333  2332221   1223333321111111  


Q ss_pred             --------CCHHHHHhhhCCCceEEEEeCCCCCCccccc-HHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEec
Q 016612          127 --------CDLDEVASAIGPWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS  197 (386)
Q Consensus       127 --------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~-l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S  197 (386)
                              .+++.+.  +.++..-|.+++-..-+|.-.+ ...+.   .  +.++++|.+....... ..-...|++.++
T Consensus       126 ~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~~p~~~---~--~~~~v~D~SS~ilsr~-iDvsk~dviyag  197 (365)
T COG1932         126 EEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPELPDIG---S--DGLLVADASSAILSRP-IDVSKYDVIYAG  197 (365)
T ss_pred             eccCccCCCChhhcc--cCCCccEEEEecCCcccceEccCCCCCC---C--CceEEEecccHHhcCC-CChhHcceEEEe
Confidence                    1223222  3334444666655556676654 12111   1  2889999886544332 112357899999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHH----h----hh-hcCC--CCCh-hhHHHHH------hcCCcHHHHHHHHHH
Q 016612          198 ATKFIAGHSDVMAGVLAVKGERLAKELYF----L----QN-AEGS--GLAP-FDCWICL------RGVKTMALRVEKQQD  259 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~~~~~~~~~~~----~----~~-~~~~--~~~~-~~~~~~~------~~~~~~~~~~~~~~~  259 (386)
                      -.|.+ ||.|  .++++.+++.+.+....    +    .. ..++  +.++ +..+...      .....+....++..+
T Consensus       198 aQKnl-GpaG--ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~  274 (365)
T COG1932         198 AQKNL-GPAG--LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQA  274 (365)
T ss_pred             hhhcc-Cccc--eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999 7788  68888886654332111    0    00 1111  2222 2222221      123344555667778


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~  339 (386)
                      +++.|.+++++..-......+..             ++ ---++|.+.+.+..+.++.++...|+..--|+. +      
T Consensus       275 ka~~LY~~id~s~fy~~~v~~~~-------------RS-~mnV~f~~~~~~ld~~fv~eae~~gl~~lkGhr-~------  333 (365)
T COG1932         275 KAQLLYDWIDKSDFYRNLVAKAN-------------RS-RMNVTFTLVDAELDKGFVAEAEAAGLIYLKGHR-S------  333 (365)
T ss_pred             HHHHHHHHHHhCCccccccchhh-------------cc-ceeEEEEcCcHHHHHHHHHHHHHcCCceecccc-C------
Confidence            88889999988752111111111             11 123677777888889999999988887555521 1      


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                        .+.+|+|+.    .++++.+++.++.+.++
T Consensus       334 ------------------vgGmRasiynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         334 ------------------VGGLRASIYNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             ------------------CCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence                              233999984    58888888888877654

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.07  E-value=7.3e-05  Score=71.15  Aligned_cols=182  Identities=20%  Similarity=0.292  Sum_probs=115.7

Q ss_pred             cceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHH------HHHHHHhhcCCC--ceEEeCcHH
Q 016612           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDA------LESLLAKLDKAD--RALCFTSGM   80 (386)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~------l~~~l~~~~g~~--~~i~~~~gt   80 (386)
                      +..+.++= +-+|++..-|++.+...+..+    .=..+|.++ ..-....      ....+++++|.+  +.-+..-||
T Consensus       116 Nk~~ksfI-GmGYyn~~vP~~I~RNilenp----~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgT  190 (1001)
T KOG2040|consen  116 NKIWKSFI-GMGYYNTHVPAVILRNILENP----GWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGT  190 (1001)
T ss_pred             hhHHHHhh-ccccccccCcHHHHHHhhhCC----cceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccch
Confidence            34444444 566777666665543222221    122345555 2211122      234566778877  677788888


Q ss_pred             HHHHH-HHH-hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccH
Q 016612           81 AALAA-VTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        81 ~al~~-~~~-~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l  158 (386)
                      +|-.+ .++ -.+++.+.++....|+-+..+++--++.+|++++..   |+.+.... ..+...+++..|.. -|.+.|.
T Consensus       191 AaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~---~~~~~~~s-~~~v~gvlvQYP~t-~G~i~d~  265 (1001)
T KOG2040|consen  191 AAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS---DIKEADYS-SKDVSGVLVQYPDT-EGSVLDF  265 (1001)
T ss_pred             hHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEec---CHHHhhcc-ccceeEEEEEcCCC-CCcccCH
Confidence            55432 233 355667799999999998877766667777775433   33333322 24578888888877 6999999


Q ss_pred             HHHHHHHHHcCCEEEEeCC-CCCCCccCCCCCCccEEEeccccc
Q 016612          159 RKIAEMAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATKF  201 (386)
Q Consensus       159 ~~i~~la~~~~~~li~D~a-~~~~~~~~~~~~~~di~~~S~sK~  201 (386)
                      .++++.+++++.++++--- .+.-.+..|.++|+||+++|...+
T Consensus       266 ~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF  309 (1001)
T KOG2040|consen  266 DELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF  309 (1001)
T ss_pred             HHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence            9999999999887665322 233345567789999999997764

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.87  E-value=3.4e-05  Score=61.95  Aligned_cols=58  Identities=17%  Similarity=0.315  Sum_probs=45.2

Q ss_pred             cccCC-CCc-hHHHHHHHHHhhcC--C--C-ceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCc
Q 016612           48 DYTRS-GNP-TRDALESLLAKLDK--A--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGG  105 (386)
Q Consensus        48 ~y~~~-g~~-~~~~l~~~l~~~~g--~--~-~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~  105 (386)
                      .|... |.+ +|+++.+++.+.+|  .  + +.|++++| ++++. ++..+++|||.|+++.|.|++
T Consensus        87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            37776 876 89999999999877  2  2 45555555 58887 556689999999999999964

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=96.02  E-value=0.054  Score=46.56  Aligned_cols=166  Identities=14%  Similarity=0.113  Sum_probs=89.5

Q ss_pred             CCchHHHHHHHHH----hhcCCC---ceEEeCcHH-HHHH-HHHHh--cCCCC-EEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           53 GNPTRDALESLLA----KLDKAD---RALCFTSGM-AALA-AVTHL--LGTGE-EIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        53 g~~~~~~l~~~l~----~~~g~~---~~i~~~~gt-~al~-~~~~~--~~~g~-~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      |..+...+...++    .+.|..   ++++++-.| .++. +++.+  -+|.. -|+-++-.--+.+   ..+. ..|.+
T Consensus        51 gssll~~isne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~---ksi~-~agfe  126 (432)
T KOG3843|consen   51 GSSLLACISNEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCF---KSII-HAGFE  126 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHH---HHHH-hcCCC
Confidence            4444444443333    344543   677666554 3443 34433  33433 3444444433332   2322 56777


Q ss_pred             EEEeCCC--------CHHHHHhhhCC-CceEEE-E-eCCCCCCcccc-cHHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          121 VKRVNTC--------DLDEVASAIGP-WTKLVW-V-ESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       121 ~~~v~~~--------d~~~l~~~~~~-~~~~v~-~-~~~~nptG~~~-~l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+.++..        |++.+++.+.+ ....|+ + +..+-..-... .+++|+.+|..|+++-++..+|+.-...    
T Consensus       127 piiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~  206 (432)
T KOG3843|consen  127 PIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHK  206 (432)
T ss_pred             ceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHH
Confidence            6666532        67777776652 223222 2 22111111222 4999999999999999999998743211    


Q ss_pred             --CCCCC-CccEEEeccccccccCCCceEEEEEEcChhHHHHH
Q 016612          185 --RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (386)
Q Consensus       185 --~~~~~-~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~  224 (386)
                        ..... ..|.++.|+-|.|..|-|  ++++.+-++...+.+
T Consensus       207 iaa~~~~grida~vqsldknf~vpvg--gaiia~fk~n~iq~i  247 (432)
T KOG3843|consen  207 IAAAAECGRIDAFVQSLDKNFMVPVG--GAIIAAFKDNFIQEI  247 (432)
T ss_pred             HHHHhhhccHHHHHHHhhhcceeecc--hhHhhHhHHHHHHHH
Confidence              11122 348889999999987764  444444445555543

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=92.93  E-value=1.7  Score=38.14  Aligned_cols=150  Identities=25%  Similarity=0.283  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHhhcCCCc---eE-EeCcHHHHHHHH-HHh--cCCC---CEEEecCCCCCcHHHHHhhhcccCCcE-EEEe
Q 016612           56 TRDALESLLAKLDKADR---AL-CFTSGMAALAAV-THL--LGTG---EEIVAGDDLYGGTDRLLSRVTPKTGVV-VKRV  124 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~---~i-~~~~gt~al~~~-~~~--~~~g---~~Vlv~~~~~~~~~~~~~~~~~~~g~~-~~~v  124 (386)
                      +.+..+..+.+++..++   .+ +.++||....++ +.+  ++.|   |-|++-  .|..  .++ .-++++|.. .+..
T Consensus        53 ii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVTG--sWS~--KA~-~EAkk~~~~~~V~~  127 (370)
T KOG2790|consen   53 IINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTG--SWSA--KAA-EEAKKYGTPNIVIP  127 (370)
T ss_pred             HHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhhccccCCccceEEec--cccH--HHH-HHHHhhCCceEEec
Confidence            67788888889988762   33 345566544432 223  3555   334443  2321  122 334455544 3333


Q ss_pred             CC--------CCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCC-CCccEEE
Q 016612          125 NT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE-LGADIVM  195 (386)
Q Consensus       125 ~~--------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~-~~~di~~  195 (386)
                      +.        .|.+.++.  +++.+.++.+.-..-.|.-++--.   .-.-+|.+++.|-+.-.  +..+.+ ...++++
T Consensus       128 ~~k~y~ygkvPd~~~w~~--~~da~yvyyCaNETVHGVEf~~~P---~~~~~~~vlVaDmSSnf--lSrpvDvsk~gvi~  200 (370)
T KOG2790|consen  128 KLKSYTYGKVPDPSTWEL--NPDASYVYYCANETVHGVEFDFIP---VNDPKGAVLVADMSSNF--LSRPVDVSKFGVIF  200 (370)
T ss_pred             cccccccCcCCChhhccc--CCCccEEEEecCceeeceecCCCC---CCCCCCceEEEecccch--hcCCccchhcceEE
Confidence            32        25555553  345557776655555566543211   11235888899987432  222222 2456777


Q ss_pred             eccccccccCCCceEEEEEEcChhH
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      ....|.. |+.|+  -.++.+++.+
T Consensus       201 aGAQKN~-G~aG~--Tvvivr~dll  222 (370)
T KOG2790|consen  201 AGAQKNV-GPAGV--TVVIVRKDLL  222 (370)
T ss_pred             ecccccc-Ccccc--EEEEEehhhh
Confidence            7889998 77774  4444555533

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=85.90  E-value=4.6  Score=34.82  Aligned_cols=91  Identities=18%  Similarity=0.227  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhcCCCCEEE-ecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           79 GMAALAAVTHLLGTGEEIV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        79 gt~al~~~~~~~~~g~~Vl-v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                      |..+-..+.++++++-.|. +.++.   .... ...++..|++++..+..|.+.|.++++. ...|++..+........-
T Consensus         8 G~~G~~v~~~L~~~~~~V~~l~R~~---~~~~-~~~l~~~g~~vv~~d~~~~~~l~~al~g-~d~v~~~~~~~~~~~~~~   82 (233)
T PF05368_consen    8 GNQGRSVVRALLSAGFSVRALVRDP---SSDR-AQQLQALGAEVVEADYDDPESLVAALKG-VDAVFSVTPPSHPSELEQ   82 (233)
T ss_dssp             SHHHHHHHHHHHHTTGCEEEEESSS---HHHH-HHHHHHTTTEEEES-TT-HHHHHHHHTT-CSEEEEESSCSCCCHHHH
T ss_pred             cHHHHHHHHHHHhCCCCcEEEEecc---chhh-hhhhhcccceEeecccCCHHHHHHHHcC-CceEEeecCcchhhhhhh
Confidence            4455455555555665554 33333   1111 1334567999999999999999999984 445555444332223334


Q ss_pred             HHHHHHHHHHcCCEEEE
Q 016612          158 IRKIAEMAHAHGALLLV  174 (386)
Q Consensus       158 l~~i~~la~~~~~~li~  174 (386)
                      .+.+.+.|++.|+-.++
T Consensus        83 ~~~li~Aa~~agVk~~v   99 (233)
T PF05368_consen   83 QKNLIDAAKAAGVKHFV   99 (233)
T ss_dssp             HHHHHHHHHHHT-SEEE
T ss_pred             hhhHHHhhhccccceEE
Confidence            57789999988764444

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02672 methionine S-methyltransferase

Probab=85.18  E-value=21  Score=38.35  Aligned_cols=181  Identities=18%  Similarity=0.141  Sum_probs=95.8

Q ss_pred             CCCCccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcHHHHHHHHHHhcCCCCEEE---ecCCCCCcHHHHHh--
Q 016612           43 ENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAALAAVTHLLGTGEEIV---AGDDLYGGTDRLLS--  111 (386)
Q Consensus        43 ~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~gt~al~~~~~~~~~g~~Vl---v~~~~~~~~~~~~~--  111 (386)
                      ....+.|.+. |.. .|..+...+..+++.+    +++++++-..|+..++.+..|.=.++   .+..-..-+...+.  
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (1082)
T PLN02672        416 GLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLPKKWLTSLAIE  495 (1082)
T ss_pred             cCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCCHHHHhHhhhh
Confidence            4556677766 765 7888888888887653    67777777788865544443310000   11111111111110  


Q ss_pred             --hhcccCCcEEEEeCCC-CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC--------
Q 016612          112 --RVTPKTGVVVKRVNTC-DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM--------  179 (386)
Q Consensus       112 --~~~~~~g~~~~~v~~~-d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~--------  179 (386)
                        ......+..+..+... ..+.+.++++ -++++|+..-.....-....++.|.+.+++.|+.++.|.+-.        
T Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (1082)
T PLN02672        496 NATSDSKSDDVITVIEAPRQSDLVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFLDISDHLELSSLPG  575 (1082)
T ss_pred             cccccCccCCeEEEEeCCCcchHHHHHHHhCCCeEEEEeccchhhhhHHHHHHHHHHHHhhCcEEEEehhhheeeccCCC
Confidence              0112222333333321 2223444444 356677654333222122358899999999999999999832        


Q ss_pred             -CCCcc----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHH
Q 016612          180 -SPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (386)
Q Consensus       180 -~~~~~----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~  225 (386)
                       .|++.    .+....+.|++ .+-|.- ..+.+.+.+++.-++.+.+.+.
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  624 (1082)
T PLN02672        576 SNGVLKYLAGHPLPSHAAIIC-GLVKNQ-VYSDLEVAFVISENEAVLKALS  624 (1082)
T ss_pred             cccHHHHhcCCCCCcchhHhh-hhhhcc-ccccceEEEEecCcHHHHHHHH
Confidence             11111    22223344444 577764 4557788888876665555443

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=80.01  E-value=15  Score=31.29  Aligned_cols=92  Identities=15%  Similarity=0.197  Sum_probs=55.5

Q ss_pred             ceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCC
Q 016612           72 RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (386)
Q Consensus        72 ~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~np  151 (386)
                      ..+++++|..|..-+..+++.|.+|.+-.|...+-.   ....+..++.... ..-+.+++.     + ..+++...+++
T Consensus        14 ~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el---~~~~~~~~i~~~~-~~~~~~~~~-----~-~~lviaAt~d~   83 (210)
T COG1648          14 KVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPEL---KALIEEGKIKWIE-REFDAEDLD-----D-AFLVIAATDDE   83 (210)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHH---HHHHHhcCcchhh-cccChhhhc-----C-ceEEEEeCCCH
Confidence            588899999999888888999999988888773333   2333343322222 112333333     2 33333333332


Q ss_pred             CcccccHHHHHHHHHHcCCEEE-EeCC
Q 016612          152 RQQICDIRKIAEMAHAHGALLL-VDNS  177 (386)
Q Consensus       152 tG~~~~l~~i~~la~~~~~~li-~D~a  177 (386)
                      .    -=++|.+.|+++++++- +|+.
T Consensus        84 ~----ln~~i~~~a~~~~i~vNv~D~p  106 (210)
T COG1648          84 E----LNERIAKAARERRILVNVVDDP  106 (210)
T ss_pred             H----HHHHHHHHHHHhCCceeccCCc
Confidence            1    12789999999987654 4444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	386
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		0.0
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		1e-82
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		2e-79
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		2e-79
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		5e-78
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		1e-76
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		1e-76
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		5e-76
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		1e-75
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		1e-75
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-75
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		1e-72
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		5e-72
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		3e-70
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		2e-68
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		8e-68
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		1e-67
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		9e-67
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		1e-63
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		3e-56
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		1e-53
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		7e-44
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		1e-42
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		9e-40
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		3e-32
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		3e-32
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		1e-31

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/386 (81%), Positives = 350/386 (90%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138
Query: 61  ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ES            CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258
Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318
Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378
Query: 301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438
Query: 361 VRISVGIEDVNDLISDLDKALRTGPL 386
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  303 bits (776), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/378 (43%), Positives = 236/378 (62%), Gaps = 6/378 (1%)
Query: 9   VSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXX 67
           ++TL ++     DP  GA+  P+Y T+T+ Q S  E+  ++Y+R+ NPTR A E      
Sbjct: 20  LATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAAL 79
Query: 68  XXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNT 126
                   F SGMAA + V  LL  G  +VA DDLYGGT RL  RV  +T G+    V+ 
Sbjct: 80  EGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139
Query: 127 CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP 186
            D     +AI   TK+VW+E+PTNP  ++ DI  IA +A  HG L +VDN+  SP+L RP
Sbjct: 140 TDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP 199
Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGE--RLAKELYFLQNAEGSGLAPFDCWICL 244
           L LGAD+V+HSATK++ GHSD++ G+ AV G+   LA+++ FLQN+ G    PFD ++ L
Sbjct: 200 LSLGADLVVHSATKYLNGHSDMVGGI-AVVGDNAELAEQMAFLQNSIGGVQGPFDSFLAL 258
Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 304
           RG+KT+ LR+    +NA  +A++L +HP ++KV Y GL  HP H L   Q  G G ++S 
Sbjct: 259 RGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSI 318
Query: 305 -LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 363
            L G    +K   E T+ F++  S G V+SL++ P  M+HASIPV  R+  G+++ LVR+
Sbjct: 319 VLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRL 378
Query: 364 SVGIEDVNDLISDLDKAL 381
           SVGIED+ DL  DL++AL
Sbjct: 379 SVGIEDLGDLRGDLERAL 396

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  292 bits (748), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/344 (42%), Positives = 216/344 (62%), Gaps = 2/344 (0%)
Query: 25  ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
           A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE              F SG+AA  
Sbjct: 41  AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 100
Query: 85  AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
            +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P TKLVW
Sbjct: 101 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 160
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 203
           +E+PTNP Q++ DI   A + H HG ++LV DN+ MSP   RPL LGADI M+SATK++ 
Sbjct: 161 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 220
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK   N   
Sbjct: 221 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 280
Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYF 322
           +A+FL S+P V+KV Y GLP HP HEL   Q  G  G V  ++ G+L  ++  ++  K F
Sbjct: 281 VAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLF 340
Query: 323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 366
           ++  S G  +SL  +P  M+HAS+    R   G+++ L+R+SVG
Sbjct: 341 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 384

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  292 bits (748), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/344 (42%), Positives = 216/344 (62%), Gaps = 2/344 (0%)
Query: 25  ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
           A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE              F SG+AA  
Sbjct: 37  AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 96
Query: 85  AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
            +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P TKLVW
Sbjct: 97  TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 156
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 203
           +E+PTNP Q++ DI   A + H HG ++LV DN+ MSP   RPL LGADI M+SATK++ 
Sbjct: 157 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 216
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
           GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK   N   
Sbjct: 217 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 276
Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYF 322
           +A+FL S+P V+KV Y GLP HP HEL   Q  G  G V  ++ G+L  ++  ++  K F
Sbjct: 277 VAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLF 336
Query: 323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 366
           ++  S G  +SL  +P  M+HAS+    R   G+++ L+R+SVG
Sbjct: 337 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 380

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  288 bits (736), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/390 (40%), Positives = 232/390 (59%), Gaps = 10/390 (2%)
Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S A   G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60
Query: 61  ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           E              F+SG A  A +   L  G   V+  D+YGGT R  ++V    GV 
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDN 176
               N   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H A    +L+VDN
Sbjct: 121 TSFTNDL-LNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179
Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           + +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239
Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQA 295
           PFD W+  RG+KT+ LRV +   +A KIAEFLA+    V  VNY GL  HP +++   Q 
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQH 299
Query: 296 KGA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ 352
           + A  G ++SF + G    +     +T+ F++  S G ++SL+ +P  M+H  IP E R+
Sbjct: 300 RDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEARE 359
Query: 353 ARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 360 ASGVFDDLVRISVGIEDTDDLLEDIKQALK 389

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  283 bits (724), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/394 (39%), Positives = 231/394 (58%), Gaps = 12/394 (3%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V  V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGXMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 290 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 348
           L   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 349 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  283 bits (723), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/378 (42%), Positives = 222/378 (58%), Gaps = 7/378 (1%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXX 65
           G++T  ++     DP  GA++ P+Y ++TF Q       G Y+Y R+GNPTR ALE+   
Sbjct: 17  GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALA 76
Query: 66  XXXXXXXXXCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
                     F+SGMAA   A+  +L  G+ +V  DD YGGT RL+ +V     V    V
Sbjct: 77  AVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136
Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
              DLD V +AI P T+L+WVE+PTNP   I DI  IA++     A +LVDN+  SP L 
Sbjct: 137 ALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ 196
Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
           +PL LGAD+V+HS T +I GHSDV+ G L    E L +   FLQN  G+   PFD ++ +
Sbjct: 197 QPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM 256
Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 304
           RG+KT+ LR+++  +NA  +AEFLA HP +  V Y GLP HPGH +   Q +G G ++S 
Sbjct: 257 RGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSV 316
Query: 305 -LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 363
            +      ++ +   T  F +  S GSV+SLI  P  M+HAS      +   + +DLVR+
Sbjct: 317 RMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLE---VPDDLVRL 373
Query: 364 SVGIEDVNDLISDLDKAL 381
           SVGIEDV DL+ DL +AL
Sbjct: 374 SVGIEDVADLLDDLKQAL 391

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  281 bits (718), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 153/394 (38%), Positives = 231/394 (58%), Gaps = 12/394 (3%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 290 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 348
           L   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 349 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/394 (38%), Positives = 230/394 (58%), Gaps = 12/394 (3%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V  V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 290 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 348
           L   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 349 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/387 (39%), Positives = 229/387 (59%), Gaps = 12/387 (3%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 8   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59  ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE                SG++A+   +  L   G+ IV+   +YG T   LS   PK 
Sbjct: 68  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+
Sbjct: 128 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
            MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++  G  ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 296
           PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +EL   Q  
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 307
Query: 297 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 355
             G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  E R   G
Sbjct: 308 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 356 LTEDLVRISVGIEDVNDLISDLDKALR 382
           +T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 368 ITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  279 bits (714), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/387 (39%), Positives = 228/387 (58%), Gaps = 12/387 (3%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 8   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59  ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE                SG++A+   +  L   G+ IV+   +YG T   LS   PK 
Sbjct: 68  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           G+ V  V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+
Sbjct: 128 GINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
            MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++  G  ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 296
           PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +EL   Q  
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 307
Query: 297 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 355
             G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  E R   G
Sbjct: 308 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 356 LTEDLVRISVGIEDVNDLISDLDKALR 382
           +T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 368 ITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  270 bits (689), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 214/363 (58%), Gaps = 9/363 (2%)
Query: 29  PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P++QT+TF   S  +           + Y+R GNPT +  E              F SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
            A+++ T   L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D+++V +A  P 
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
           TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 259
           K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++   +
Sbjct: 205 KYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 319
           N  K+A+FL  H ++ KVN+ GL   PGH++   Q  G GS   F   S   +K ++E  
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHL 324
Query: 320 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 379
           K  ++ VS G V +LI  P  M+HA++P  + + +G+T +LVRISVGIE+V+D+I+DL +
Sbjct: 325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQ 384
Query: 380 ALR 382
           AL 
Sbjct: 385 ALE 387

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  268 bits (684), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 213/363 (58%), Gaps = 9/363 (2%)
Query: 29  PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P++QT+TF   S  +           + Y+R GNPT +  E              F SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
            A+++ T   L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D+++V +A  P 
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
           TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 259
            +I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++   +
Sbjct: 205 XYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 319
           N  K+A+FL  H ++ KVN+ GL   PGH++   Q  G GS   F   S   +K ++E  
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHL 324
Query: 320 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 379
           K  ++ VS G V +LI  P  M+HA++P  + + +G+T +LVRISVGIE+V+D+I+DL +
Sbjct: 325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQ 384
Query: 380 ALR 382
           AL 
Sbjct: 385 ALE 387

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  262 bits (669), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/384 (35%), Positives = 229/384 (59%), Gaps = 12/384 (3%)
Query: 10  STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
           +T  ++ + + D +GA   P+YQT+TF   +  + G         Y YTR GNPT   LE
Sbjct: 9   ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 68
Query: 62  SXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
                          +SGM A+AA V  +L  G+ +++ + LYG T  L      K G+ 
Sbjct: 69  GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 128
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIM 179
           V  +NT    EV   + P TK+V+ E+P NP  +I D+ ++ + AH+  G L++ DN+  
Sbjct: 129 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 188
Query: 180 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPF 238
           SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +  +  +++  GS ++P 
Sbjct: 189 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 248
Query: 239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA 298
           D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G  +H GH++   Q +  
Sbjct: 249 DAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMY 308
Query: 299 GSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT 357
           GS+++F+  S    +K +++  K  ++ VS G  +SLI  P  M+HA +P E R+A G+T
Sbjct: 309 GSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGIT 368
Query: 358 EDLVRISVGIEDVNDLISDLDKAL 381
           + ++R+SVGIED ++LI+D  + L
Sbjct: 369 DGMIRLSVGIEDADELIADFKQGL 392

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/391 (36%), Positives = 228/391 (58%), Gaps = 18/391 (4%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L    
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
           DN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 293 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
            Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDKALR 382
              G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  254 bits (648), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 143/391 (36%), Positives = 227/391 (58%), Gaps = 18/391 (4%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L    
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
           DN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 293 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
            Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDKALR 382
              G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/391 (36%), Positives = 227/391 (58%), Gaps = 18/391 (4%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L    
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
           DN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 293 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
            Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDKALR 382
              G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  250 bits (638), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 210/367 (57%), Gaps = 2/367 (0%)
Query: 18  NEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFT 77
           N+ + YG +  P++ ++T+      E   +DY+R GNPTRD ++                
Sbjct: 15  NDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 78  SGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
           +GM+A+  VT + L  G+ +VA  D YGG+ RL   +  +    V  V+  D   + +A+
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 196
               KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGAD+V+H
Sbjct: 135 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
           S T ++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+  R+E 
Sbjct: 195 SCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMEL 254
Query: 257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 315
            Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF L G     +  
Sbjct: 255 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRF 314
Query: 316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 375
           +     F++  S G V+SLIS    M+HA +  E R A G++E L+RIS GIED  DLI+
Sbjct: 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIA 374
Query: 376 DLDKALR 382
           DL+   R
Sbjct: 375 DLENGFR 381

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  240 bits (612), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 127/307 (41%), Positives = 192/307 (62%), Gaps = 3/307 (0%)
Query: 78  SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
           SGM A+AA V   L  G+ +++ D LYG T  L      K GV V  ++      +   +
Sbjct: 21  SGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHL 80
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLSRPLELGADIVM 195
            P T++V+ E+P NP  ++ DI    + A     +L +VDN+  SP+L+ PL+LG DIV+
Sbjct: 81  KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVV 140
Query: 196 HSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           HSATK+I GH+DV+AG++  + + +AK +   +++  G+ ++P D W+  RG  T+ +RV
Sbjct: 141 HSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRV 200
Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH 314
           ++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q K  GS+++F    L  +K 
Sbjct: 201 KRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKK 260
Query: 315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 374
           V++     S+ VS G  +SLI  P  M+HA +P E R+A GLT++L+R+SVG E+V D+I
Sbjct: 261 VLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDII 320
Query: 375 SDLDKAL 381
            DL +AL
Sbjct: 321 DDLKQAL 327

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  215 bits (548), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 199/359 (55%), Gaps = 7/359 (1%)
Query: 30  LYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL-AAVT 87
           +Y +A   + S A E   Y Y+R GNPT    E                SGMAA+  ++ 
Sbjct: 55  VYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLG 114
Query: 88  HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVES 147
            LLG G+ +VA   L+G    + S + P+ GV    V+  DL +   A+   T+ V+ E+
Sbjct: 115 ALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFET 174
Query: 148 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 207
           P+NP Q + DI  + E+AHA GA +++DN   +P+L +   LG D+V++S T  I G   
Sbjct: 175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGR 234
Query: 208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 267
           V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A+RV+    +AQ+IAEF
Sbjct: 235 VLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEF 294
Query: 268 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----VVETTKYF 322
           L  HP V+ V Y  LP HP ++L   Q  G G+V++F L     ++K     V++  +  
Sbjct: 295 LNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLI 354
Query: 323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
            I+ + G  KSL++ P   +H ++  E R A GL + +VRISVG+ED +DLI+D+D+AL
Sbjct: 355 DISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 192/368 (52%), Gaps = 12/368 (3%)
Query: 25  ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCF 76
           A++TP+  T+ +     +E           ++Y R GNPT   LE               
Sbjct: 76  AITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLM 135
Query: 77  TSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
            SGM A+   +  L+  G  IV   D Y  T   +  + PK G+    ++  D+  +  A
Sbjct: 136 ASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELA 195
Query: 136 IG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
           +      L + ESPTNP  +  DI  ++++ H  GAL+ +D +  +P+  + L LGAD+V
Sbjct: 196 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLV 255
Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           +HSATKF+ GH+DV+AG ++    +L  E+  L +  G  L P   ++ +RG+KT+ LRV
Sbjct: 256 LHSATKFLGGHNDVLAGCIS-GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRV 314
Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSK 313
           ++Q   A ++AE L +HP+V+ V Y GL  HP H +   Q  G G  +SF + G L  + 
Sbjct: 315 QQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTA 374
Query: 314 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 373
             V+  K   I  SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +DL
Sbjct: 375 KFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDL 434
Query: 374 ISDLDKAL 381
            +D+ +AL
Sbjct: 435 KADILQAL 442

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  174 bits (441), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/397 (31%), Positives = 188/397 (47%), Gaps = 44/397 (11%)
Query: 29  PLYQTAT--FKQPS------ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P+Y T +  FK P       A +     Y+R  NPT D LE                SG 
Sbjct: 24  PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGH 83
Query: 81  AA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEVASAIGP 138
           AA   A+T L   G+ IV+  +LYGGT         + G+ V+  +  +  +E  +    
Sbjct: 84  AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE 143
Query: 139 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHS 197
            T+  WVES  NP   I D+  +A+ A   G  L+VDN+  M   L RPL  GA +V HS
Sbjct: 144 KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHS 203
Query: 198 ATKFIAGHSDVMAGVL---------------------AVKGERLAK---ELYFLQNA--- 230
            TK++ GH  V+AG +                        G RL +   EL F+  A   
Sbjct: 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVD 263
Query: 231 ----EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP 286
               +G  L PF+ W+ L G++T++LR E+  +N   +A +L   P+V  VNY GLP HP
Sbjct: 264 GLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHP 323
Query: 287 GHELHYSQAKGA-GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 344
            H+      KG  G+VL+F L G    +K  +   K  S   + G  ++L   P   +H+
Sbjct: 324 HHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHS 383
Query: 345 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
            +  E +   G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 384 QLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 196/390 (50%), Gaps = 29/390 (7%)
Query: 21  DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXX 72
           D +GAL TP+Y  A F+  ++ E           + Y+RS NPT + LE           
Sbjct: 40  DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALG 99
Query: 73  XXCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
                SGMAA++ A+  L   G+ +V  D L+G T  L  +  P  G+ V+ V+  D   
Sbjct: 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLA 159
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           V  A    TKL+++E+ +NP+ Q+ D+  ++++ HA G  L+VD ++  P L     LG 
Sbjct: 160 VEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQNAE------- 231
           DI + S+TKFI+G    + GVL   G    K L              FL  A        
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 232 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 291
           G  L+P + ++   G++TMALR+E+   NAQ++A +L S P+VK VN+  LP+ P + + 
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIA 339
Query: 292 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
             Q + AGS+L+F   S   S   ++  K      +    KSLI  P  + +A    E R
Sbjct: 340 KRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEER 399
Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDKAL 381
               ++  ++R+SVGIE++ DL  D+ +AL
Sbjct: 400 LKLEISPAMMRLSVGIEEIEDLKEDILQAL 429

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score =  160 bits (406), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 188/398 (47%), Gaps = 40/398 (10%)
Query: 21  DPYGALSTPLYQTATF--------KQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXX 72
           DP+GA+  P+Y  A +        ++  AT  G Y Y R  +PT  ALE           
Sbjct: 15  DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73
Query: 73  XXCFTSGMAALAAVTHLLGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
                SG AA  A    L   G+E+VA   L+G T  L  +V    GV V+ V+  + + 
Sbjct: 74  AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEA 132
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELG 190
           V  A+   T+ V+VE+  NP   + D+  +A +A   G  L+VDN+   +  L RPL  G
Sbjct: 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 191 ADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQ--------------------- 228
           A +V+ S T + +GH  V+ G VL+ + E       FLQ                     
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 229 -----NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 283
                +  G  L+PF+ ++  +G++T+ALRV +  + A+ +AE L  HP+VK + Y GLP
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLP 312
Query: 284 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 343
           E P H          G +L+   G L  +   +   +      + G  ++L+  P   +H
Sbjct: 313 EDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTH 371
Query: 344 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
           + +  E R   G+T  LVR+SVG+ED  DL++  ++AL
Sbjct: 372 SRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEAL 409

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 170/346 (49%), Gaps = 19/346 (5%)
Query: 44  NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+              F  G AA+A ++   +  G+ ++  +  
Sbjct: 51  NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  +    S++  K GV     +     ++   + P TK+V++ESP +   ++ D+  I 
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
               +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R 
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARC 229
Query: 221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 280
            ++L       G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+ 
Sbjct: 230 WEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHP 289
Query: 281 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISM 337
            LP   GHE       G+  + SF+      ++ +   ++    FS+  S+G  +SLI  
Sbjct: 290 ALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL- 348
Query: 338 PCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLD 378
                 A+ P  +   R       +  L+R+ +G+EDV+DLI+DLD
Sbjct: 349 ------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 170/349 (48%), Gaps = 19/349 (5%)
Query: 44  NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+              F  G AA+A ++   +  G+ ++  +  
Sbjct: 71  NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 130
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  +    S++  K GV     +     ++   + P TK+V++ESP +   ++ D+  I 
Sbjct: 131 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 190
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
               +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R 
Sbjct: 191 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARC 249
Query: 221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 280
            ++L       G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+ 
Sbjct: 250 WEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHP 309
Query: 281 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISM 337
            LP   GHE       G+  + SF+      ++ +   ++    FS+  S+G  +SLI  
Sbjct: 310 ALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL- 368
Query: 338 PCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDKAL 381
                 A+ P  +   R       +  L+R+ +G+EDV+DLI+DLD   
Sbjct: 369 ------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGF 411

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 169/346 (48%), Gaps = 19/346 (5%)
Query: 44  NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+              F  G AA+A ++   +  G+ ++  +  
Sbjct: 51  NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  +    S++  K GV     +     ++   + P TK+V++ESP +   ++ D+  I 
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
               +    A++++DN+  + VL + L+ G D+ + +AT ++ GHSD M G  AV   R 
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGT-AVCNARC 229
Query: 221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 280
            ++L       G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+ 
Sbjct: 230 WEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHP 289
Query: 281 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISM 337
            LP   GHE       G+  + SF+      ++ +   ++    FS+  S+G  +SLI  
Sbjct: 290 ALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL- 348
Query: 338 PCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLD 378
                 A+ P  +   R       +  L+R+ +G+EDV+DLI+DLD
Sbjct: 349 ------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	386
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	0.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	0.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	0.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	0.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	0.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	0.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	0.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	0.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	0.0
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	0.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	0.0
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-174
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	1e-164
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	1e-162
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	1e-113
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	1e-109
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	1e-104
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	9e-82
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	4e-74
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	9e-66
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	2e-62
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	1e-57
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	2e-07
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	7e-07
3pj0_A	359	LMO0305 protein; structural genomics, joint center	2e-06
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	3e-06
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	6e-06
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	7e-06
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	9e-06
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	2e-05
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	3e-05
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	3e-05
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	4e-05
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	5e-05
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	7e-05
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	7e-05
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	9e-05
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	1e-04
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	2e-04
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	2e-04
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	2e-04
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	3e-04
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	4e-04
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	4e-04
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	5e-04
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	6e-04
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	6e-04
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	7e-04
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	8e-04
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	9e-04

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  631 bits (1629), Expect = 0.0
 Identities = 325/386 (84%), Positives = 361/386 (93%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378

Query: 301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438

Query: 361 VRISVGIEDVNDLISDLDKALRTGPL 386
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  576 bits (1486), Expect = 0.0
 Identities = 159/382 (41%), Positives = 242/382 (63%), Gaps = 4/382 (1%)

Query: 5   EEPGVSTLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
                +T  ++   + +     A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE 
Sbjct: 15  HFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEK 74

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122
            +A LD A   L F SG+AA   +THLL  G++I+  DD+YGGT+R   +V  + G+ + 
Sbjct: 75  AVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKIS 134

Query: 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL-VDNSIMSP 181
            V+   +  + +AI P TKLVW+E+PTNP Q++ DI   A + H HG ++L VDN+ MSP
Sbjct: 135 FVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSP 194

Query: 182 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241
              RPL LGADI M+SATK++ GHSDV+ G+++V  E L   L FLQN+ G+  +P DC+
Sbjct: 195 YFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCY 254

Query: 242 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV 301
           +C RG+KT+ +R+EK   N   +A+FL S+P V+KV Y GLP HP HEL   Q  G   +
Sbjct: 255 LCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGM 314

Query: 302 LSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
           ++F + G+L  ++  ++  K F++  S G  +SL  +P  M+HAS+    R   G+++ L
Sbjct: 315 VTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTL 374

Query: 361 VRISVGIEDVNDLISDLDKALR 382
           +R+SVG+ED  DL+ DLD+AL+
Sbjct: 375 IRLSVGLEDEEDLLEDLDQALK 396

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  568 bits (1467), Expect = 0.0
 Identities = 162/390 (41%), Positives = 238/390 (61%), Gaps = 10/390 (2%)

Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S A   G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           E  +A L+ A   L F+SG A  A +   L  G   V+  D+YGGT R  ++V    GV 
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDN 176
               N   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H A    +L+VDN
Sbjct: 121 TSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           + +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239

Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP-RVKKVNYAGLPEHPGHELHYSQA 295
           PFD W+  RG+KT+ LRV +   +A KIAEFLA+    V  VNY GL  HP +++   Q 
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQH 299

Query: 296 KGA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ 352
           + A  G ++SF + G    +     +T+ F++  S G ++SL+ +P  M+H  IP E R+
Sbjct: 300 RDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEARE 359

Query: 353 ARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 360 ASGVFDDLVRISVGIEDTDDLLEDIKQALK 389

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  550 bits (1419), Expect = 0.0
 Identities = 148/378 (39%), Positives = 220/378 (58%), Gaps = 3/378 (0%)

Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAK 66
             +T+ +      D  YG +  P++ ++T+      E   +DY+R GNPTRD ++  LA+
Sbjct: 4   KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAE 63

Query: 67  LDKADRALCFTSGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125
           L+    A+   +GM+A+  VT + L  G+ +VA  D YGG+ RL   +  +    V  V+
Sbjct: 64  LEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185
             D   + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  
Sbjct: 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN 183

Query: 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245
           PL LGAD+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LR
Sbjct: 184 PLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR 243

Query: 246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF- 304
           G++T+  R+E  Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF 
Sbjct: 244 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFE 303

Query: 305 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 364
           L G     +  +     F++  S G V+SLIS    M+HA +  E R A G++E L+RIS
Sbjct: 304 LDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRIS 363

Query: 365 VGIEDVNDLISDLDKALR 382
            GIED  DLI+DL+   R
Sbjct: 364 TGIEDGEDLIADLENGFR 381

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  545 bits (1407), Expect = 0.0
 Identities = 168/382 (43%), Positives = 240/382 (62%), Gaps = 4/382 (1%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
           +    ++TL ++     DP  GA+  P+Y T+T+ Q S  E+  ++Y+R+ NPTR A E 
Sbjct: 15  DRALSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYER 74

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVV 121
            +A L+   RA  F SGMAA + V  LL  G  +VA DDLYGGT RL  RV  +T G+  
Sbjct: 75  CVAALEGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDF 134

Query: 122 KRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 181
             V+  D     +AI   TK+VW+E+PTNP  ++ DI  IA +A  HG L +VDN+  SP
Sbjct: 135 SFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASP 194

Query: 182 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAKELYFLQNAEGSGLAPFDC 240
           +L RPL LGAD+V+HSATK++ GHSD++ G+  V     LA+++ FLQN+ G    PFD 
Sbjct: 195 MLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDS 254

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
           ++ LRG+KT+ LR+    +NA  +A++L +HP ++KV Y GL  HP H L   Q  G G 
Sbjct: 255 FLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGG 314

Query: 301 VLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED 359
           ++S  L G    +K   E T+ F++  S G V+SL++ P  M+HASIPV  R+  G+++ 
Sbjct: 315 IVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDA 374

Query: 360 LVRISVGIEDVNDLISDLDKAL 381
           LVR+SVGIED+ DL  DL++AL
Sbjct: 375 LVRLSVGIEDLGDLRGDLERAL 396

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  536 bits (1384), Expect = 0.0
 Identities = 163/382 (42%), Positives = 225/382 (58%), Gaps = 7/382 (1%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALE 61
               G++T  ++     DP  GA++ P+Y ++TF Q       G Y+Y R+GNPTR ALE
Sbjct: 13  HRFAGLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALE 72

Query: 62  SLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           + LA ++ A     F+SGMAA       +L  G+ +V  DD YGGT RL+ +V     V 
Sbjct: 73  AALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
              V   DLD V +AI P T+L+WVE+PTNP   I DI  IA++     A +LVDN+  S
Sbjct: 133 YTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFAS 192

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           P L +PL LGAD+V+HS TK+I GHSDV+ G L    E L +   FLQN  G+   PFD 
Sbjct: 193 PALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDA 252

Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
           ++ +RG+KT+ LR+++  +NA  +AEFLA HP +  V Y GLP HPGH +   Q +G G 
Sbjct: 253 YLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGG 312

Query: 301 VLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED 359
           ++S  +      ++ +   T  F +  S GSV+SLI  P  M+HAS          + +D
Sbjct: 313 MVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTA---GSQLEVPDD 369

Query: 360 LVRISVGIEDVNDLISDLDKAL 381
           LVR+SVGIEDV DL+ DL +AL
Sbjct: 370 LVRLSVGIEDVADLLDDLKQAL 391

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  534 bits (1378), Expect = 0.0
 Identities = 141/371 (38%), Positives = 221/371 (59%), Gaps = 10/371 (2%)

Query: 21  DP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKAD 71
           D    + + P++QT+TF   S  +           + Y+R GNPT +  E ++  ++ A 
Sbjct: 16  DHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAA 75

Query: 72  RALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
            +  F SGM A  ++    L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D++
Sbjct: 76  GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVE 135

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG 190
           +V +A  P TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELG
Sbjct: 136 KVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELG 195

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM 250
           ADI +HS +K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+
Sbjct: 196 ADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTL 255

Query: 251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA 310
            +R++   +N  K+A+FL  H ++ KVN+ GL   PGH++   Q  G GS   F   S  
Sbjct: 256 PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFE 315

Query: 311 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV 370
            +K ++E  K  ++ VS G V +LI  P  M+HA++P  + + +G+T +LVRISVGIE+V
Sbjct: 316 AAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENV 375

Query: 371 NDLISDLDKAL 381
           +D+I+DL +AL
Sbjct: 376 DDIIADLKQAL 386

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  517 bits (1333), Expect = 0.0
 Identities = 142/391 (36%), Positives = 229/391 (58%), Gaps = 12/391 (3%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGN 54
            + PG +T  ++   +     GAL  P+YQTATF  P+              + Y+R  N
Sbjct: 5   NKLPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISN 64

Query: 55  PTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRV 113
           PT + LE+ +A L+  +  L   SGM A  + +  LL  G+E++ G+ LYG T   L   
Sbjct: 65  PTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHG 124

Query: 114 TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL 173
             + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++
Sbjct: 125 IGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVV 184

Query: 174 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEG 232
           VDN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +  L  L++  G
Sbjct: 185 VDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG 244

Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304

Query: 293 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
            Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364

Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDKALR 382
              G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  516 bits (1331), Expect = 0.0
 Identities = 142/395 (35%), Positives = 236/395 (59%), Gaps = 13/395 (3%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRS 52
           M+  E    +T  ++ + + D +GA   P+YQT+TF   +  + G         Y YTR 
Sbjct: 1   MA-HERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRL 59

Query: 53  GNPTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS 111
           GNPT   LE  +A L+K +  +  +SGM A  A V  +L  G+ +++ + LYG T  L  
Sbjct: 60  GNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE 119

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGA 170
               K G+ V  +NT    EV   + P TK+V+ E+P NP  +I D+ ++ + AH+  G 
Sbjct: 120 HALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGV 179

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 229
           L++ DN+  SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +  +  +++
Sbjct: 180 LVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKD 239

Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             GS ++P D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G  +H GH+
Sbjct: 240 ITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHD 299

Query: 290 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 348
           +   Q +  GS+++F L      +K +++  K  ++ VS G  +SLI  P  M+HA +P 
Sbjct: 300 IAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPK 359

Query: 349 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 383
           E R+A G+T+ ++R+SVGIED ++LI+D  + L  
Sbjct: 360 EEREAAGITDGMIRLSVGIEDADELIADFKQGLDA 394

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  517 bits (1333), Expect = 0.0
 Identities = 124/392 (31%), Positives = 201/392 (51%), Gaps = 15/392 (3%)

Query: 4   EEEPGVSTLLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGP--------YDYTRS 52
                  ++ ++            A++TP+  T+ +     +E           ++Y R 
Sbjct: 52  SFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRY 111

Query: 53  GNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS 111
           GNPT   LE  ++ L+ A+  L   SGM A    +  L+  G  IV   D Y  T   + 
Sbjct: 112 GNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE 171

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
            + PK G+    ++  D+  +  A+      L + ESPTNP  +  DI  ++++ H  GA
Sbjct: 172 TILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGA 231

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA 230
           L+ +D +  +P+  + L LGAD+V+HSATKF+ GH+DV+AG +     +L  E+  L + 
Sbjct: 232 LVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCI-SGPLKLVSEIRNLHHI 290

Query: 231 EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 290
            G  L P   ++ +RG+KT+ LRV++Q   A ++AE L +HP+V+ V Y GL  HP H +
Sbjct: 291 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHI 350

Query: 291 HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 349
              Q  G G  +SF + G L  +   V+  K   I  SFG  +S++  P  MS+  +   
Sbjct: 351 AKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS 410

Query: 350 VRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
            R   G+ ++LVR S G+ED +DL +D+ +AL
Sbjct: 411 DRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 442

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  507 bits (1309), Expect = 0.0
 Identities = 157/394 (39%), Positives = 237/394 (60%), Gaps = 12/394 (3%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA +           Y YTR
Sbjct: 1   MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE  LA L++ +  L   SG++A    +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120

Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +     L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240

Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300

Query: 290 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 348
           L   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360

Query: 349 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  490 bits (1263), Expect = e-174
 Identities = 130/375 (34%), Positives = 206/375 (54%), Gaps = 14/375 (3%)

Query: 21  DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
             +   +  +Y T+ +   SA         E   Y Y+R GNPT    E  L  ++ A  
Sbjct: 39  SGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPA 98

Query: 73  ALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A    SGMAA   ++  LLG G+ +VA   L+G    + S + P+ GV    V+  DL +
Sbjct: 99  AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQ 158

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
              A+   T+ V+ E+P+NP Q + DI  + E+AHA GA +++DN   +P+L +   LG 
Sbjct: 159 WERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGV 218

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251
           D+V++S TK I G   V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A
Sbjct: 219 DVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA 278

Query: 252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLA 310
           +RV+    +AQ+IAEFL  HP V+ V Y  LP HP ++L   Q  G G+V++F L     
Sbjct: 279 IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED 338

Query: 311 LSK----HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 366
           ++K     V++  +   I+ + G  KSL++ P   +H ++  E R A GL + +VRISVG
Sbjct: 339 VAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG 398

Query: 367 IEDVNDLISDLDKAL 381
           +ED +DLI+D+D+AL
Sbjct: 399 LEDTDDLIADIDRAL 413

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  463 bits (1194), Expect = e-164
 Identities = 133/326 (40%), Positives = 202/326 (61%), Gaps = 3/326 (0%)

Query: 59  ALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE  +AKL+ A+      SGM A+ A+V   L  G+ +++ D LYG T  L      K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH-AHGALLLVDN 176
           GV V  ++      +   + P T++V+ E+P NP  ++ DI    + A      L++VDN
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGL 235
           +  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK +   +++  G+ +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA 295
           +P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q 
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241

Query: 296 KGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 355
           K  GS+++F    L  +K V++     S+ VS G  +SLI  P  M+HA +P E R+A G
Sbjct: 242 KMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAG 301

Query: 356 LTEDLVRISVGIEDVNDLISDLDKAL 381
           LT++L+R+SVG E+V D+I DL +AL
Sbjct: 302 LTDNLIRLSVGCENVQDIIDDLKQAL 327

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  460 bits (1186), Expect = e-162
 Identities = 100/392 (25%), Positives = 189/392 (48%), Gaps = 19/392 (4%)

Query: 6   EPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYTRSGNP 55
           +  + T L+N         GA+++ + + ++    S            NG   Y R G  
Sbjct: 23  DKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTL 82

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T  +L+  + +L+     + F  G AA+A ++   +  G+ ++  +  Y  +    S++ 
Sbjct: 83  THFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKIL 142

Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALL 172
            K GV     +     ++   + P TK+V++ESP +   ++ D+  I     +    A++
Sbjct: 143 SKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAII 202

Query: 173 LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG 232
           ++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R  ++L       G
Sbjct: 203 MIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAYLMG 261

Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
             +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE   
Sbjct: 262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 321

Query: 293 SQAKGAGSVLSFL---TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 349
               G+  + SF+     +     + ++    FS+  S+G  +SLI        A+I   
Sbjct: 322 RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIR-- 379

Query: 350 VRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
            +     +  L+R+ +G+EDV+DLI+DLD   
Sbjct: 380 PQGEIDFSGTLIRLHIGLEDVDDLIADLDAGF 411

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  336 bits (865), Expect = e-113
 Identities = 129/414 (31%), Positives = 204/414 (49%), Gaps = 36/414 (8%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYT 50
                  G +T  ++        +GAL TP+Y  A F+  ++            G + Y+
Sbjct: 19  YFQGHMRGFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALG-HVYS 77

Query: 51  RSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
           RS NPT + LE  L  L  A   L   SGMAA++ A+  L   G+ +V  D L+G T  L
Sbjct: 78  RSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSL 137

Query: 110 LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169
             +  P  G+ V+ V+  D   V  A    TKL+++E+ +NP+ Q+ D+  ++++ HA G
Sbjct: 138 FQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKG 197

Query: 170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------------ 217
             L+VD ++  P L     LG DI + S+TKFI+G    + GVL   G            
Sbjct: 198 IPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAP 257

Query: 218 --ERLAKELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL 268
              +     +         QN  G  L+P + ++   G++TMALR+E+   NAQ++A +L
Sbjct: 258 YYAKAGPMAFLYKARKEVFQN-LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWL 316

Query: 269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVS 327
            S P+VK VN+  LP+ P + +   Q + AGS+L+F L    A S   ++  K      +
Sbjct: 317 LSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEA-SYRFMDALKLIRRATN 375

Query: 328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
               KSLI  P  + +A    E R    ++  ++R+SVGIE++ DL  D+ +AL
Sbjct: 376 IHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  326 bits (837), Expect = e-109
 Identities = 122/400 (30%), Positives = 191/400 (47%), Gaps = 42/400 (10%)

Query: 21  DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
           DP+GA+  P+Y  A +   +            G Y Y R  +PT  ALE  L  L+ A  
Sbjct: 15  DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73

Query: 73  ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A+   SG AA   A+  LL  G+E+VA   L+G T  L  +V    GV V+ V+  + + 
Sbjct: 74  AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEA 132

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELG 190
           V  A+   T+ V+VE+  NP   + D+  +A +A   G  L+VDN+   +  L RPL  G
Sbjct: 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192

Query: 191 ADIVMHSATKFIAGHSDVMAGVL---------------------AVKGERLAKELY---- 225
           A +V+ S TK+ +GH  V+ G +                      +  E L    +    
Sbjct: 193 AHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252

Query: 226 ---FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 282
               L    G  L+PF+ ++  +G++T+ALRV +  + A+ +AE L  HP+VK + Y GL
Sbjct: 253 RTLGLSLC-GMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGL 311

Query: 283 PEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 342
           PE P H          G +L+   G L  +   +   +      + G  ++L+  P   +
Sbjct: 312 PEDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLKA-ANLGDARTLLVHPWTTT 370

Query: 343 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           H+ +  E R   G+T  LVR+SVG+ED  DL++  ++AL 
Sbjct: 371 HSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  314 bits (806), Expect = e-104
 Identities = 128/405 (31%), Positives = 191/405 (47%), Gaps = 50/405 (12%)

Query: 24  GALSTPLYQTATFKQPSA---------TENGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
            +   P+Y T ++   S           E G   Y+R  NPT D LE  LA L+    AL
Sbjct: 19  LSRQVPIYPTTSYVFKSPEHAANLFALKEFG-NIYSRIMNPTVDVLEKRLAALEGGKAAL 77

Query: 75  CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEV 132
              SG AA   A+T L   G+ IV+  +LYGGT         + G+ V+  +  +  +E 
Sbjct: 78  ATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEF 137

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGA 191
            +     T+  WVES  NP   I D+  +A+ A   G  L+VDN+  M   L RPL  GA
Sbjct: 138 LALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGA 197

Query: 192 DIVMHSATKFIAGHSDVMAGVL-------------------------AVKGERLAKELYF 226
            +V HS TK++ GH  V+AG +                             E    EL F
Sbjct: 198 ALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG-ELAF 256

Query: 227 LQNA-------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY 279
           +  A       +G  L PF+ W+ L G++T++LR E+  +N   +A +L   P+V  VNY
Sbjct: 257 IVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNY 316

Query: 280 AGLPEHPGHEL--HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLIS 336
            GLP HP H+    Y +    G+VL+F L G    +K  +   K  S   + G  ++L  
Sbjct: 317 PGLPHHPHHDRAQKYFK-GKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAI 375

Query: 337 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
            P   +H+ +  E +   G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 376 HPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  255 bits (654), Expect = 9e-82
 Identities = 48/295 (16%), Positives = 92/295 (31%), Gaps = 22/295 (7%)

Query: 31  YQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL 89
           +               Y Y   G  T + + + +   +         SG  A++ A+  +
Sbjct: 44  FGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGI 103

Query: 90  LGTGEEIVAGDDLYGGTDRLLSRVTPK------------TGVVVKRVNTCDLDEVASAIG 137
           L  G+E++        T   +  V  K              V +      D + VA+AI 
Sbjct: 104 LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH 163

Query: 138 PWTKLVWVESP----TNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELG 190
             TK++ ++      T P   I  I+++           ++ VDN     +    P  +G
Sbjct: 164 SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVG 223

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM 250
           AD++  S  K   G      G +  K +   +   +   + G G         L+ +   
Sbjct: 224 ADLMAGSLIKNPGGGIVKTGGYIVGKEQ-YVEACAYRLTSPGIGAEAGASLYSLQEMYQG 282

Query: 251 ALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 304
                     A K A F A+   ++               +   Q      +++F
Sbjct: 283 FFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAF 337

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  235 bits (602), Expect = 4e-74
 Identities = 57/288 (19%), Positives = 99/288 (34%), Gaps = 28/288 (9%)

Query: 29  PLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVT 87
             +Q     +   T +  Y Y   G  + D + + +   + A     F +G  A+ AA+ 
Sbjct: 51  KAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALF 110

Query: 88  HLLGTGEEIVA--------GDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASA 135
             L   + +++          D+ G  D        + GV  K V+      D++ V   
Sbjct: 111 GNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEE 170

Query: 136 IGP--WTKLVWVESPTN----PRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSR-P 186
           +      KL+ ++  T        +I +I +I +         ++ VDN     V  + P
Sbjct: 171 LKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEP 230

Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
            ++GADI+  S  K I G      G +A K E    +  F     G G      +  +R 
Sbjct: 231 TDVGADIIAGSLIKNIGGGIATTGGYIAGKEE-YVTQATFRVTVPGIGGECGSTFGVMRS 289

Query: 247 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
           +             A K A F A    +     AG    P +    + 
Sbjct: 290 LYEGLFMAPHVTIEAVKGAVFCARIMEL-----AGFDVLPKYNDKRTD 332

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  214 bits (546), Expect = 9e-66
 Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 32/281 (11%)

Query: 31  YQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHL 89
           +Q     +   T +  Y Y   G  + DA+ + +   + A     F +G  AL AA+   
Sbjct: 52  FQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGN 111

Query: 90  LGTGEEIVAG--------DDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAI 136
           L  G  +++          D+ G T+        + G+  K+V+       +L+E+   +
Sbjct: 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVL 171

Query: 137 GPWTKLVWVESPTN------PRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPL 187
                +  V    +          I DI+ I +         +  VDN     +    P 
Sbjct: 172 KEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT 231

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
           ++GAD++  S  K I G      G LA   +   ++  +     G G      +  +R +
Sbjct: 232 DVGADLIAGSLIKNIGGGIAPTGGYLAGTKD-CIEKTSYRLTVPGIGGECGSTFGVVRSM 290

Query: 248 KT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 285
                +A  +  +   A K A   +    ++   +  +P++
Sbjct: 291 YQGLFLAPHISME---ALKGAILCSRI--MELAGFEVMPKY 326

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  204 bits (520), Expect = 2e-62
 Identities = 61/334 (18%), Positives = 113/334 (33%), Gaps = 30/334 (8%)

Query: 48  DYTRSGNPTR--DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGG 105
            Y  S       +         D+ D+ + F    +A+ A    L   + I    +L G 
Sbjct: 52  TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGH 111

Query: 106 TDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN-PRQQICDIRKIAEM 164
                S       V  K   +  + E+ + I   T ++   S  +    ++ + +K+   
Sbjct: 112 PSIERS----CKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINT 167

Query: 165 AHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219
           A    A++ VD++  + V         L+LGAD+V+ S  K + G      G+LA K E 
Sbjct: 168 AKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---RGGLLAGKKE- 223

Query: 220 LAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKIA----EFLASHPR- 273
           L  ++Y      G    P       R +K   L R+ K  + A+       E L    + 
Sbjct: 224 LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA 283

Query: 274 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSF--GS 330
           +           P   +     K      +  +   + +  ++++     +ITV+   G+
Sbjct: 284 IDDNINIVYERTPTGFVIKRVYKDD----TINIKKLIEIGFNLLKNYGIITITVAGMPGA 339

Query: 331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 364
            KSL           I         + E +    
Sbjct: 340 SKSLRIDLTSRDAERIDDNYIIK-AIVESIKMAF 372

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score =  192 bits (490), Expect = 1e-57
 Identities = 51/268 (19%), Positives = 88/268 (32%), Gaps = 34/268 (12%)

Query: 46  PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVA-GDDLY 103
            Y Y   G  T + + + + K + A       SG  A+   +  +L   +E++      Y
Sbjct: 53  GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPY 112

Query: 104 GGTDRL------LSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESP---- 148
              + +               +    V        D   +A  + P TK++ ++      
Sbjct: 113 DTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYA 172

Query: 149 TNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGH 205
             P   I  I+++           ++ VDN     V    P E+GADI+  S  K   G 
Sbjct: 173 DRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGG 232

Query: 206 SDVMAGVLAVKGERLAKELYFLQNAEG----SGLAPFDCWICLRGVKTMALRVEKQQDNA 261
                G +A K   L     +     G    +G + +      +G   +A  V  Q   A
Sbjct: 233 LAKTGGYIAGKEA-LVDLCGYRLTTPGIGREAGASLYSLLEMYQGF-FLAPHVTAQ---A 287

Query: 262 QKIAEFLASHPRVKKVNYAGLPEHPGHE 289
            K A F A       +   G+   P  +
Sbjct: 288 IKGARFTA-----AMLAEFGVEADPVWD 310

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 128 DLDEVASAIGPWTK-----LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
             +  A  I    K     L  +  P      + D++KIA++   +   LLV+ +     
Sbjct: 131 TPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR 190

Query: 183 LSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
           +  P+   E+GAD ++ S  K +A  +    GV+ +K E  
Sbjct: 191 M--PVSLKEIGADFIVGSGHKSMA--ASGPIGVMGMKEEWA 227

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 54/391 (13%), Positives = 108/391 (27%), Gaps = 117/391 (29%)

Query: 42  TENGPYDYTRSGNPTRDALESLLAK----LDKADRALCFTSGMAALAAVTHLLGTGEEIV 97
            E G + Y       +D L           D  D        + +   + H++ + + + 
Sbjct: 9   FETGEHQYQ-----YKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 98  AGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD 157
                  GT RL   +  K   +V++     ++EV      +           P      
Sbjct: 63  -------GTLRLFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPS----M 107

Query: 158 IRKIAEMAHAHGALLLVDNSIMSPV-LSRP----------LEL--GADIVMHSATKFIAG 204
           + ++          L  DN + +   +SR           LEL    ++++        G
Sbjct: 108 MTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-------G 157

Query: 205 HSDVMAG----VLAVKGERLAKELYFLQNAEGSGLAPFDC-WICLRGVKTMALRVEKQQD 259
               + G     +A+             + +      F   W+ L+   +    +E  Q 
Sbjct: 158 ----VLGSGKTWVALDV---------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 260 NAQKIAEFLASHPRVKKVNYAGLPEHPGH-ELHYSQAKGAGSVL----SFLTGSLAL--- 311
              +I             N+    +H  + +L     +     L     +    L L   
Sbjct: 205 LLYQIDP-----------NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 312 -SKHVVE----------TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED- 359
            +               TT++  +T    +           +H S+      +  LT D 
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT--------TTHISL---DHHSMTLTPDE 302

Query: 360 ---LVRISVGIEDVNDLISDL-DKALRTGPL 386
              L+   +          DL  + L T P 
Sbjct: 303 VKSLLLKYLDCR-----PQDLPREVLTTNPR 328

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 116 KTGVVVK--RVNT----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169
           + G  VK   V+         +  S I   T+LV V S +     + D+R + ++ H  G
Sbjct: 136 RYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVG 195

Query: 170 ALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
           AL++VD+S  +P   R L   E  AD+V  +A  +       +  ++      +  
Sbjct: 196 ALVVVDHSAAAP--YRLLDIRETDADVVTVNAHAWGGPP---IGAMVFRDPSVMNS 246

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Length = 357

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 16/133 (12%)

Query: 55  PTRDALESLLAKLDKADRALCFTSG-MAALAAV-THLLGTGEEIVAGDDLY------GGT 106
              +  E   A +   D A+ F SG MA   A+      T    VA   L          
Sbjct: 47  AIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDG 106

Query: 107 DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC----DIRKIA 162
            + L  +      V        LDE+ +   P    + +E P      +     ++  I+
Sbjct: 107 LKELHPIETIL--VGAADRLMTLDEIKAL--PDIACLLLELPQREIGGVAPAFSELETIS 162

Query: 163 EMAHAHGALLLVD 175
                 G  L +D
Sbjct: 163 RYCRERGIRLHLD 175

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 15/133 (11%)

Query: 55  PTRDALESLLAKLDKADRALCFTSG-MAALAAV-THLLGTGEEIVAGDDLY------GGT 106
              +  E+ +AK+     A+ F SG MA   A+           VA   L          
Sbjct: 48  AVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDG 107

Query: 107 DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC----DIRKIA 162
            + L ++TP    +        +D++ S   P    V +E P            ++ KI+
Sbjct: 108 LKELQQITPLL--LGTANQLLTIDDIKSLREP-VSSVLIELPQREIGGQLPAFEELEKIS 164

Query: 163 EMAHAHGALLLVD 175
           E  H  G  L +D
Sbjct: 165 EYCHEQGISLHLD 177

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* Length = 347

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 18/137 (13%)

Query: 55  PTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDD----LY-GGTDR 108
           PT + LE L A+    + AL   SG M    ++      G+E++   D     Y  G   
Sbjct: 38  PTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMA 97

Query: 109 LLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQIC----DI 158
           +LS V P    V  +    D D+V  AI       P T L+ +E+  N          +I
Sbjct: 98  VLSGVMPHP--VPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENI 155

Query: 159 RKIAEMAHAHGALLLVD 175
           ++I  +A  HG  + +D
Sbjct: 156 KEICTIAKEHGINVHID 172

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 40/287 (13%), Positives = 81/287 (28%), Gaps = 51/287 (17%)

Query: 48  DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY---- 103
           D   +G+     LE  + +L      +    G  A   ++ L     + VAG+  +    
Sbjct: 68  DEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTR 127

Query: 104 ------GGTDR-LLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPR 152
                 G     ++       G+ +      DL ++   I          + +    N  
Sbjct: 128 YHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLA 187

Query: 153 Q----QICDIRKIAEMAHAHGALLLVDNSIMS------------------PVLSRPLELG 190
                 + ++R + E+  AHG  +  D +                       +   +   
Sbjct: 188 GGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSY 247

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-----SGLAPFDCWICLR 245
           AD    S  K    +   + G L +  + +      L           GLA  D      
Sbjct: 248 ADGCTMSGKKDCLVN---IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAM-- 302

Query: 246 GVKTMALRVEKQQD-NAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 291
               + LR   Q +    ++ +      ++K      +    GH + 
Sbjct: 303 ---AIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVF 346

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 116 KTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           + G  ++ +      T  L+ + +     T+L+ +   +N       + ++  +AH HGA
Sbjct: 136 RVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGA 195

Query: 171 LLLVD 175
            +LVD
Sbjct: 196 KVLVD 200

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420

 Score = 46.3 bits (111), Expect = 9e-06
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 116 KTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           KTG V+K V      + DL+   + +   TKLV V   +N    +    +IA++AH  GA
Sbjct: 141 KTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGA 200

Query: 171 LLLVD 175
            +LVD
Sbjct: 201 KVLVD 205

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 116 KTGVVVKRV-------NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH 168
           + G+  +                +A+ +GP T+LV +        Q+  + +I  +   H
Sbjct: 124 RFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRH 183

Query: 169 G----ALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 221
                  +LVD +  +  L  PL    L  D    +  K+ AG + V  G L + G+ L 
Sbjct: 184 QGNYPVRVLVDGAQSAGSL--PLDFSRLEVDYYAFTGHKWFAGPAGV--GGLYIHGDCLG 239

Query: 222 K 222
           +
Sbjct: 240 E 240

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 32/285 (11%), Positives = 71/285 (24%), Gaps = 49/285 (17%)

Query: 61  ESLLAKLDKADRALCFTSG--MAALAAVTHLLGTGEEIVA----------GDDLYGGTDR 108
           E   A++  ADR+     G   +    +   +   + +V           G  L G    
Sbjct: 211 EKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPV 270

Query: 109 LLSRVTPKTGVVVKRVNTC-DLDEVASAI----------GPWTKLVWVESPTNPRQQICD 157
            +     + G++          + +   I          G       V + T       +
Sbjct: 271 YMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYN 329

Query: 158 IRKIAEMAHAHGALLLVDNS-----IMSPVL---------SRPLELGADIVMHSATKFIA 203
            ++  ++       L  D +       +P+                      HS  K + 
Sbjct: 330 AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN 389

Query: 204 GHSDVMAGVLAVKG-------ERLAKELYFLQNAEGSG--LAPFDCWICLRGVKTMALRV 254
             S   A  + V+         R  +               A  D  + +    +     
Sbjct: 390 ALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLT 447

Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG 299
           ++  D A    + +A   +    + +   +    E+      G  
Sbjct: 448 QEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKT 492

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 34/119 (28%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDN-------- 176
           D   ++  +   TKLV+V SP NP   + D+   +++ ++   +G ++  D         
Sbjct: 157 DWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFD 216

Query: 177 -----SIMSPVLSRPLELGAD----IVMHSATK----------FIAGHSDVMAGVLAVK 216
                      L    +LG      ++  S +K          F+AG ++++   L  +
Sbjct: 217 GNKPLGC----LQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYR 271

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 39/267 (14%)

Query: 128 DLDEVASAI-----GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
            ++++ +AI           V       P +   DI +IA++   +    +++ +     
Sbjct: 215 PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQN 274

Query: 183 ------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
                 L +  +   D V+ S+ K     + +  G++        KE+        S   
Sbjct: 275 NYYLEKLKKAFKYRVDAVVSSSDKN--LLTPIGGGLVYSTDAEFIKEISLSYPGRASATP 332

Query: 237 PFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 294
             +  + L   G K     V+ Q+++ + + E L    +          +  G  L    
Sbjct: 333 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSK----------KTGGKFLDVES 382

Query: 295 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR 354
              +   ++     +A   + +  T    I  +       +      +H  I +    A 
Sbjct: 383 PIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT---YTHDYIVMNA--AI 437

Query: 355 GLTEDLVRISVGIEDVNDLISDLDKAL 381
           G+           ED+ + +S L+K L
Sbjct: 438 GVRT---------EDIVNSVSKLEKIL 455

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 31/135 (22%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             LE  +++    D  + ++S   A       LLG  + I++        D L       
Sbjct: 91  KELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIIS--------DELNHASIID 142

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDEV------ASAIGPWTKLVWVESPTNPRQQICDIRK 160
              L +          R     + ++      A   G   KL+  +   +    I D++ 
Sbjct: 143 GIRLCKAQ------RYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKS 196

Query: 161 IAEMAHAHGALLLVD 175
           I ++A  + AL++VD
Sbjct: 197 ICDLADKYNALVMVD 211

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 38/136 (27%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             +E  LAK    D  L   SG  A +  +  +      +          D         
Sbjct: 107 PMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYI--------DFFAHMSLWE 158

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ-------ICDIR 159
               +             N   L  +    GP   ++ V+S              I  + 
Sbjct: 159 GARYANAQAH---PFMHNNCDHLRMLIQRHGP--GIIVVDS-------IYSTLGTIAPLA 206

Query: 160 KIAEMAHAHGALLLVD 175
           ++  ++   G  LLVD
Sbjct: 207 ELVNISKEFGCALLVD 222

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 56  TRDALESL--LAKLDKADRALCFT-SGMAAL-AAVTHLLGTGEEIVAGDD-LYGGTDRLL 110
             +  + +   AK  +  +A+  T S   ++ A V +     ++++  D   +G   R  
Sbjct: 54  MLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFG--HRF- 110

Query: 111 SRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWV---ESPTNPRQQICDIRKIA 162
            ++     +    +          +++          + V   E+ T       D   I 
Sbjct: 111 VQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLY---DTMMIG 167

Query: 163 EMAHAHGALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAG 204
           E    +    + D   +S  L+ P    E GAD+++  + K +A 
Sbjct: 168 EFCKKNNMFFVCDC--VSAFLADPFNMNECGADVMITGSQKVLAC 210

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-----IMSPVLSRPLELGAD 192
              KLV +  P     +  ++ ++ +  H     +L+D +      +       L   AD
Sbjct: 145 DGHKLVVLTYPN-YYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQAD 203

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223
            V+ S  K +   +  M  VL +      +E
Sbjct: 204 YVVQSFHKTLPALT--MGSVLYIHKNAPYRE 232

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 42/139 (30%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
            ALE  LA+     RAL F SG  A  A +  ++   + I A        DRL       
Sbjct: 87  QALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAA--------DRLSHASLLE 138

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDEVAS---AIGPWTKLVWVESPTNPRQQ-------IC 156
              LS         ++R    D+  +A    +  P  ++V  E                 
Sbjct: 139 AASLSPSQ------LRRFAHNDVTHLARLLASPCPGQQMVVTEG-------VFSMDGDSA 185

Query: 157 DIRKIAEMAHAHGALLLVD 175
            + +I ++   H   L+VD
Sbjct: 186 PLAEIQQVTQQHNGWLMVD 204

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 45/142 (31%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             LE  LA     + A+ ++S   A       LLG  + I++        D L       
Sbjct: 93  KELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIIS--------DALNHASIID 144

Query: 110 ---LSRVTPKTGVVVKRVNTCDLD------EVASAIGPWTKLVWVESPTNPRQQ------ 154
              L +          R    D+       + A   G    L+  +              
Sbjct: 145 GVRLCKAK------RYRYANNDMQELEARLKEAREAGARHVLIATDG-------VFSMDG 191

Query: 155 -ICDIRKIAEMAHAHGALLLVD 175
            I +++ + ++A  + AL++VD
Sbjct: 192 VIANLKGVCDLADKYDALVMVD 213

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 33/118 (27%)

Query: 112 RVTPKTGVVVKRV------NTCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIR 159
           R   ++G  ++R            D +  A+ P    +++ +P NP      R     ++
Sbjct: 113 RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERP---LLQ 169

Query: 160 KIAEMAHAHGALLLVD----------NSIMSPVLSRP-LELGADIVMHSATKF--IAG 204
            IA+   +    L++D             +  +   P +      V+ S TKF  I G
Sbjct: 170 AIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHI-----WVLRSLTKFYAIPG 222

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Length = 438

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 154 QICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIV 194
            + D+   AE AH  GAL +     +S  VL  P   GADI 
Sbjct: 210 ALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIA 251

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 29/133 (21%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             LE  L+     + A+ F++G  + L  ++ L+G  + I+         D         
Sbjct: 91  VELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILL--------DERDHASIID 142

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDE----VASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
              LS         V +    ++++    ++       KL+  +   +    I ++ ++ 
Sbjct: 143 GSRLSFSK------VIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELT 196

Query: 163 EMAHAHGALLLVD 175
            +A+   A ++VD
Sbjct: 197 SIANEFDAAVMVD 209

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 33/117 (28%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDN-------- 176
            L+E          LV + SP NP  +   +       ++A  H  +L+ D         
Sbjct: 146 SLNE---KELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYEN 202

Query: 177 ----SIMSPVLSRPLELGAD---IVMHSATK----------FIAGHSDVMAGVLAVK 216
               S++           A    +V+HS +K          FIAG S ++    A +
Sbjct: 203 TPPPSLLEA--CMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFR 257

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 24/120 (20%)

Query: 77  TSG--MAALAAVTHLLGTGEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRV 124
           T+G     L+ +  LL  G+E++  +   D Y       GG    +    PK        
Sbjct: 124 TTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTR 183

Query: 125 N---TCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 175
               T D ++   AI   TK V + +P NP      R+   ++  +  +   H  +++ D
Sbjct: 184 GEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTRE---ELTTLGNICVKHNVVIISD 240

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 31/162 (19%)

Query: 41  ATENGPYDYTR-SGNPT-RDALESLLAKL-----DKADRALCFTSG--MAALAAVTHLLG 91
           A  +    YTR  G+P    AL  L  K+     D  +  +    G   +   ++  L+ 
Sbjct: 49  AFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQID-PNEEILVAVGAYGSLFNSIQGLVD 107

Query: 92  TGEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRVN--TCDLDEVASAIGPW 139
            G+E++      D Y       G     +   +  T  +    +  T D  E+ S     
Sbjct: 108 PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSK 167

Query: 140 TKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 175
           TK + + +P NP      RQ   +++ IA++   H  L + D
Sbjct: 168 TKAIILNTPHNPLGKVYTRQ---ELQVIADLCVKHDTLCISD 206

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 16/109 (14%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDE 131
           SG   + A++ + +  G +++       G       V    G     +          ++
Sbjct: 79  SGTGIMEASIRNGVSKGGKVLVTIIGAFGK--RYKEVVESNGRKAVVLEYEPGKAVKPED 136

Query: 132 VASAI--GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
           +  A+   P  + V +   E+ T        + ++A++A  H  L+ VD
Sbjct: 137 LDDALRKNPDVEAVTITYNETSTGVLN---PLPELAKVAKEHDKLVFVD 182

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Length = 474

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 157 DIRKIAEMAHAHGALLLVD----NSIMSPVLSRPLELGADIVMH 196
            I +I+ +    G  L  D    N+IM    +RP ++G D V+H
Sbjct: 221 RILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDMGFD-VVH 261

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDE 131
             +  L AA   L+   + ++       G          +    +  +        D   
Sbjct: 67  EPVLGLEAAAASLISPDDVVLNLASGVYGK--GFGYWAKRYSPHLLEIEVPYNEAIDPQA 124

Query: 132 VASAI--GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
           VA  +   P   +V V   ++P+        I  I  +  AHGA L+VD
Sbjct: 125 VADMLKAHPEITVVSVCHHDTPSGTIN---PIDAIGALVSAHGAYLIVD 170

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 37/136 (27%)

Query: 59  ALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL-------- 109
            +E  L        A+ F++G MA L  ++ L G GE ++         D          
Sbjct: 113 EVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVIL--------DADSHASIYDG 164

Query: 110 --LSRVTPKTGVVVKRVNTCDLDEVASAIGPW-TKLVWVESPTNPRQQ-------ICDIR 159
                      V  +  +  DLD+    +     KLV +E               I  ++
Sbjct: 165 CQQGNAEI---VRFRHNSVEDLDKRLGRLPKEPAKLVVLEG-------VYSMLGDIAPLK 214

Query: 160 KIAEMAHAHGALLLVD 175
           ++  +A  HGA++LVD
Sbjct: 215 EMVAVAKKHGAMVLVD 230

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 22/118 (18%)

Query: 77  TSG--MAALAAVTHLLGTGEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRV 124
           T G   A  A +   +  G+E++  +   D Y       GG  R +     KTG  +   
Sbjct: 107 TVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSA 166

Query: 125 N-TCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 175
           +   D +E+ +     TK++ + +P NP      R    ++  +A +      L + D
Sbjct: 167 DWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRA---ELEVVANLCKKWNVLCVSD 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	386
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	100.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	100.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	100.0
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.97
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.97
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.97
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.97
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.97
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.97
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.97
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.97
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.97
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.97
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.97
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.97
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.96
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.96
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.96
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.96
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.96
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.96
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.96
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.96
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.96
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.96
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.96
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.96
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.96
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.96
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.96
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.96
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.96
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.96
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.96
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.96
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.96
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.96
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.96
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.96
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.96
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.96
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.96
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.96
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.96
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.96
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.96
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.96
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.96
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.96
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.95
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.95
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.95
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.95
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.95
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.95
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.95
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.95
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.95
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.95
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.95
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.95
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.95
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.95
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.95
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.95
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.95
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.95
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.95
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.95
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.95
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.95
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.95
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.95
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.95
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.95
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.95
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.95
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.95
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.95
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.95
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.95
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.95
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.95
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.95
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.95
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.94
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.94
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.94
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.94
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.94
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.94
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.94
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.94
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.94
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.94
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.94
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.94
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.94
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.94
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.94
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.94
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.94
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.94
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.94
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.94
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.94
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.94
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.94
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.93
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.93
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.93
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.93
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.93
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.93
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.88
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.93
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.93
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.93
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.93
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.93
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.93
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.93
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.93
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.93
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.93
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.92
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.92
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.92
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.92
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.92
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.92
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.92
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.92
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.92
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.92
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.92
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.92
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.91
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.91
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.91
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.91
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.91
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.91
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.91
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.91
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.91
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.91
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.9
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.9
1svv_A	359	Threonine aldolase; structural genomics, structura	99.9
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.9
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.9
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.9
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.9
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.9
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.89
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.89
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.89
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.89
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.89
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.89
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.89
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.89
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.89
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.89
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.88
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.88
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.88
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.88
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.88
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.88
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.88
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.88
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.88
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.88
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.87
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.87
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.87
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.87
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.87
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.86
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.86
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.86
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.86
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.86
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.86
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.86
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.86
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.86
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.86
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.86
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.85
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.85
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.85
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.85
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.85
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.85
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.84
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.84
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.84
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.84
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.84
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.84
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.83
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.83
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.83
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.83
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.82
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.81
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.69
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.79
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.79
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.77
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.75
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.7
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.67
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.62
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.59
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.58
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.51
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.32
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	82.08

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.6e-50  Score=378.12  Aligned_cols=379  Identities=34%  Similarity=0.544  Sum_probs=338.1

Q ss_pred             CCCCCccceeeccCCCCCCCCCcccceeeeeeeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEE
Q 016612            4 EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (386)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~   75 (386)
                      +.+.++++++++.|..++.+|.+.+|+++++++..++.        .....+.|++.++|.++++++.+++++|.++.++
T Consensus        22 ~~~~~~~t~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~  101 (414)
T 3ndn_A           22 PDGVSQATVGVRGGMLRSGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFA  101 (414)
T ss_dssp             CTTCCHHHHHHHTTCCCCTTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             cCCCCccceeeecCCCCCCCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEE
Confidence            45667889999999777889999999999999987654        2345677888888999999999999999999999


Q ss_pred             eCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcc
Q 016612           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (386)
Q Consensus        76 ~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~  154 (386)
                      ++||++|+. ++.+++++||+|++++|.|+++...+...++..|++++.++..|++++++++++++++|++++|+||+|.
T Consensus       102 ~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~le~p~NptG~  181 (414)
T 3ndn_A          102 TASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQS  181 (414)
T ss_dssp             ESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEEESSCTTTCC
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCc
Confidence            999999987 5666899999999999999998876666667799999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCC
Q 016612          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (386)
Q Consensus       155 ~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~  234 (386)
                      +.|+++|.++|+++|+++|+|++|+.+....+...++|+++.|+||++++++.+++|+++++++.+.+.+.......+..
T Consensus       182 ~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~  261 (414)
T 3ndn_A          182 LVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA  261 (414)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCC
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999997776667778899999999999976554789999998655544555555556677


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-----H
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----L  309 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----~  309 (386)
                      +++..+++++++++.+..+.++..++++.+.++|++++.+..+.++++++.+++.++.+..++.|++++|.+++     .
T Consensus       262 ~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~  341 (414)
T 3ndn_A          262 MSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAK  341 (414)
T ss_dssp             CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccH
Confidence            78888888889999999999999999999999999999888899999999999999888888899999999954     5


Q ss_pred             HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      +...++++.++..++.++.|+.++++++|+.+++..++++.+.+.|..+++||+|+|.|+++++++.|+++|+
T Consensus       342 ~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al~  414 (414)
T 3ndn_A          342 QRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRALS  414 (414)
T ss_dssp             HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            6788999999999999999999999999999999999999999999999999999999999999999999984

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=1.7e-49  Score=372.64  Aligned_cols=376  Identities=43%  Similarity=0.707  Sum_probs=341.6

Q ss_pred             CCccceeeccCCCCC-CCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHH
Q 016612            7 PGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (386)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~   85 (386)
                      .+++|++++.|..++ .+|.+++|+++++++..++......+.|++.++|.+.++++.++++.|.++.++++||++|+.+
T Consensus        18 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~   97 (400)
T 3nmy_A           18 LSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAATST   97 (400)
T ss_dssp             CCHHHHHHHTTCCCCTTTCBSSCCBCCCSBBBCSBTTBSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred             CCcchheeeCCCCCCCCCCCcCCCccccceeeccCccccCCcccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH
Confidence            367899999997665 4999999999999999877766677889999999999999999999999999999999999987


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhh-cccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l  164 (386)
                      +++++++||+|+++++.|+++...+... ++..|++++.++..|++++++++++++++|++++|+||+|.+.|+++|.++
T Consensus        98 ~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~l  177 (400)
T 3nmy_A           98 VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVI  177 (400)
T ss_dssp             HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHH
Confidence            7788999999999999999887666555 667899999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEE-EEEEcChhHHHHHHHhhhhcCCCCChhhHHHH
Q 016612          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (386)
Q Consensus       165 a~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (386)
                      |+++|+++|+|++|+.+....+...++|+++.|++|+++|++..++| +++.+++++.+.+.......+...++..++++
T Consensus       178 a~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~  257 (400)
T 3nmy_A          178 ARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLA  257 (400)
T ss_dssp             HHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHH
T ss_pred             HHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999999999999877766677789999999999999887655678 67777777877777777777888899999999


Q ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcc
Q 016612          244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYF  322 (386)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~  322 (386)
                      +++++.+..+.++..++++.+.++|++++.+..+.++++++++++.++.++.++.|++++|.+.. .+...++++.++..
T Consensus       258 l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~  337 (400)
T 3nmy_A          258 LRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELF  337 (400)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSS
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999998999999999999999988888999999999965 45688999999999


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      ++..+.|+..+++.+|+.+++..++++.+.+.|+.++++|+|+|.|+++++++.|+++|+
T Consensus       338 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~  397 (400)
T 3nmy_A          338 TLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV  397 (400)
T ss_dssp             EECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             eEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999997

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=3.2e-49  Score=373.15  Aligned_cols=374  Identities=33%  Similarity=0.449  Sum_probs=295.8

Q ss_pred             CccceeeccCCCCC-CCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCc
Q 016612            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (386)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (386)
                      +++|++++.|..++ .+|.+.+|+++++++..++..        ....+.|++.++|.++++++.+++++|.+..+++++
T Consensus        26 ~~~t~~~h~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~s  105 (430)
T 3ri6_A           26 GFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVLALGS  105 (430)
T ss_dssp             CHHHHHHCCC--------------------------------------------CCHHHHHHHHHHHHHHTCSEEEEESC
T ss_pred             CcchhheeCCCCCCCCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEEEECC
Confidence            46789999996655 489999999999998876442        234567888889999999999999999999999999


Q ss_pred             HHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        79 gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                      |++|+. ++.+++++||+|+++++.|+++...+...++..|++++.++.+|++++++++++++++|++++|+||+|.+.|
T Consensus       106 G~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~d  185 (430)
T 3ri6_A          106 GMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVAD  185 (430)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCCeecC
Confidence            999987 5667899999999999999998877666778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChh-H----------------
Q 016612          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-L----------------  220 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~-~----------------  220 (386)
                      +++|.++|+++|+++|+|++++.+...++...++|+++.|++|+++|++...+|+++.+.+. +                
T Consensus       186 l~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~  265 (430)
T 3ri6_A          186 LEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPM  265 (430)
T ss_dssp             HHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGG
T ss_pred             HHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchh
Confidence            99999999999999999999999888778888999999999999988755668888854331 1                


Q ss_pred             --HHHH-HHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCC
Q 016612          221 --AKEL-YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  297 (386)
Q Consensus       221 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~  297 (386)
                        .... .......+..+++..+++.+++++.+..|+++..++++.+.++|++++.+..+.++++++.|++.++.++. +
T Consensus       266 ~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~-g  344 (430)
T 3ri6_A          266 AFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQF-R  344 (430)
T ss_dssp             HHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHC-S
T ss_pred             hHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhC-C
Confidence              1111 12233456778899999989999999999999999999999999999999899999999999999988877 8


Q ss_pred             CCc-eEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHH
Q 016612          298 AGS-VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  376 (386)
Q Consensus       298 ~~~-~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~  376 (386)
                      .|+ +++|.+++.....++++.++..++.+++|+.++++++|+.++|..++.+.+...|+.+++||+|+|.|+++++++.
T Consensus       345 ~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl~~d  424 (430)
T 3ri6_A          345 YAGSILTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKED  424 (430)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHHHHHH
T ss_pred             CCceEEEEEECCHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHH
Confidence            899 9999998878899999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             HHHHHh
Q 016612          377 LDKALR  382 (386)
Q Consensus       377 l~~~l~  382 (386)
                      |+++|+
T Consensus       425 l~~al~  430 (430)
T 3ri6_A          425 ILQALC  430 (430)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            999984

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=1.4e-47  Score=365.69  Aligned_cols=381  Identities=85%  Similarity=1.281  Sum_probs=325.0

Q ss_pred             CCCccceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHH
Q 016612            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (386)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~   85 (386)
                      +..+++.+++++.+.++.+.+++|+.++..+...+....+.+.|++.|++.++++++++++++|.++.+++++|++|+.+
T Consensus        84 ~~~~~~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~  163 (464)
T 1ibj_A           84 EASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA  163 (464)
T ss_dssp             -CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred             cCCcCCeEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHH
Confidence            34556888999854467889999999988776555555667889877888999999999999999999999999999887


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la  165 (386)
                      ++.++++||+|++++|.|+++...+...++..|.+++.++..|++++++++++++++|++++|+||+|.+.|+++|.++|
T Consensus       164 ~l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la  243 (464)
T 1ibj_A          164 VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMA  243 (464)
T ss_dssp             HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHH
Confidence            66788999999999999999877666677889999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      +++|+++|+|++|+.+....+...++|+++.|+||+++|+.|+|+|+++++++.+.+.+.......+...++..++++..
T Consensus       244 ~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~  323 (464)
T 1ibj_A          244 HAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLR  323 (464)
T ss_dssp             HTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred             HHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999998876655556789999999999999888999999999876677767666655666778888888888


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceec
Q 016612          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  325 (386)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~  325 (386)
                      +++....+.+...+++..+.+++++++.++++++++|++++++.++.+..++.+++++|.+++....+.+.+.+...++.
T Consensus       324 al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~  403 (464)
T 1ibj_A          324 GIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIA  403 (464)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEEC
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEe
Confidence            88888888888888999999999998888899999999999988876655567899999997654566799999989999


Q ss_pred             cCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCCC
Q 016612          326 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  386 (386)
Q Consensus       326 ~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~~  386 (386)
                      ++.|...++++.|+...+...+.+.+...|..+++||+|++.++++++++.|+++|++.++
T Consensus       404 v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~edi~~li~~L~~al~~~~~  464 (464)
T 1ibj_A          404 VSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL  464 (464)
T ss_dssp             SCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred             ecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHhhcCC
Confidence            9999988999999876665555444445566688999999999999999999999998764

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=2.2e-47  Score=359.29  Aligned_cols=377  Identities=42%  Similarity=0.726  Sum_probs=321.6

Q ss_pred             CccceeeccCCCCC-CC-CCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHH
Q 016612            8 GVSTLLMNFSNEFD-PY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (386)
Q Consensus         8 ~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~   85 (386)
                      ++++++++.|..++ .+ |.+.+|+++++++..++......+.|++.++|...++++.+++++|.++.+++++|++|+.+
T Consensus        18 ~~~t~~~h~g~~~~~~~~~~~~~pi~~stt~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~   97 (403)
T 3cog_A           18 HFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVT   97 (403)
T ss_dssp             THHHHHHHTTCCGGGSTTCBSSCCBCCCSCBCCC--------------CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHH
T ss_pred             CcccEEEeCCCCCCcCCCCCccCCeeccceeecCCccccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence            56789999996544 46 99999999999988776555556778888889999999999999999899999999998875


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la  165 (386)
                      ++.++++||+|++++|.|+++...+...++..|++++.++.+|++++++.+++++++|++++|+||+|.+.|+++|.++|
T Consensus        98 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la  177 (403)
T 3cog_A           98 ITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIV  177 (403)
T ss_dssp             HHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHH
Confidence            54488999999999999998877666677889999999999999999999999999999999999999999999999999


Q ss_pred             HHcC-CEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH
Q 016612          166 HAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (386)
Q Consensus       166 ~~~~-~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (386)
                      +++| +++|+|++|+.+....+...++|+++.|+||+++|++++++|+++++++.+.+.+.......+...++..++++.
T Consensus       178 ~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~  257 (403)
T 3cog_A          178 HKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCN  257 (403)
T ss_dssp             TSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             HHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            9999 999999999988766666778999999999999988887899999976777777766666666777888888888


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcce
Q 016612          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFS  323 (386)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g  323 (386)
                      ++++.+..+.++..+++..+.+++++++.++.+++++|+++|++.++.+..++.+++++|.+++ .....++++.+++..
T Consensus       258 ~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~  337 (403)
T 3cog_A          258 RGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFT  337 (403)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcce
Confidence            8888888889999999999999999998899999999999999988876666779999999853 456778888888887


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ...+.|+..+++++|+..++...+.+.+...|..+++||+|++.++++++++.|.++|+++
T Consensus       338 ~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~  398 (403)
T 3cog_A          338 LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA  398 (403)
T ss_dssp             ECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             EccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            7889999999999999999988888888888988999999999999999999999999753

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=1.4e-46  Score=355.96  Aligned_cols=376  Identities=32%  Similarity=0.562  Sum_probs=326.9

Q ss_pred             CCc-cceeeccCCCCC---CCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceE
Q 016612            7 PGV-STLLMNFSNEFD---PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAL   74 (386)
Q Consensus         7 ~~~-~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i   74 (386)
                      .++ +|++++.|..++   .+|.+.+|+++++++..++..        ....+.|++.++|.++++++.+++++|.++.+
T Consensus        54 ~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g~~~~v  133 (445)
T 1qgn_A           54 LNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTL  133 (445)
T ss_dssp             CCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhCCCcEE
Confidence            345 788889896654   589999999999999876542        23467788888899999999999999999999


Q ss_pred             EeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCc-eEEEEeCCCCCC
Q 016612           75 CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT-KLVWVESPTNPR  152 (386)
Q Consensus        75 ~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~-~~v~~~~~~npt  152 (386)
                      ++++|++|+. ++.+++++||+|+++++.|+++...+...++..|++++.++..|++++++++++++ ++|++++|+||+
T Consensus       134 ~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~Npt  213 (445)
T 1qgn_A          134 LMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPF  213 (445)
T ss_dssp             EESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTT
T ss_pred             EeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCC
Confidence            9999999987 45568899999999999999887666556778999999999999999999998888 999999999999


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcC
Q 016612          153 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  232 (386)
Q Consensus       153 G~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~  232 (386)
                      |.+.|+++|.++|+++|+++|+|++|+.+....+...++|+++.|+||+++|++.+++|++++++ ++.+.+.......+
T Consensus       214 G~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~~~l~~~~~~~g  292 (445)
T 1qgn_A          214 LRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPL-KLVSEIRNLHHILG  292 (445)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH-HHHHHHHHHHHHHC
T ss_pred             CcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECH-HHHHHHHHHHHHhC
Confidence            99999999999999999999999999988776677789999999999999776556789999874 56666665555566


Q ss_pred             CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHh
Q 016612          233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LAL  311 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~  311 (386)
                      ...++..++++.++++.+..++++..++++.+.++|++++.+..+.++++++.|++.+...+.++.+++++|.+++ ...
T Consensus       293 ~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~  372 (445)
T 1qgn_A          293 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLT  372 (445)
T ss_dssp             CCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHH
T ss_pred             CCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHH
Confidence            6778888888888999988899999999999999999988777788899998888888766666789999999965 345


Q ss_pred             HHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          312 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       312 ~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      ..++++.++.+++.++.|+.++++.+|+..+|..++.+.+.+.|+.+++||+|+|.|+++++++.|++++++
T Consensus       373 ~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          373 TAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDS  444 (445)
T ss_dssp             HHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            889999999899999999999999999999999999999999999899999999999999999999999975

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=1.7e-46  Score=352.34  Aligned_cols=372  Identities=44%  Similarity=0.716  Sum_probs=329.6

Q ss_pred             CccceeeccCCCCC-CCCCcccceeeeeeeecCCCCC-CCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-
Q 016612            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (386)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-   84 (386)
                      ++++++++.|..++ .+|.+.+|+++++++..++... ...+.|++.++|.++++++.+++++|.++.+++++|++|+. 
T Consensus        17 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~   96 (392)
T 3qhx_A           17 GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADC   96 (392)
T ss_dssp             CHHHHHHHSSCCCCTTTCBSSCCBCCCSBBCCSSTTCCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHH
T ss_pred             CcchhheeCCCCCCCCCCCccCCcccCcceEecCcccccCCccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence            46788999996655 4899999999999988765543 33677888888999999999999999999999999999987 


Q ss_pred             HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHH
Q 016612           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (386)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l  164 (386)
                      ++..++++||+|+++++.|+++...+...++..|.+++.++.+|++++++++++++++|++++|+||+|.+.|+++|.++
T Consensus        97 al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l  176 (392)
T 3qhx_A           97 ALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQL  176 (392)
T ss_dssp             HHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHH
Confidence            45568899999999999999887777677788999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH
Q 016612          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (386)
Q Consensus       165 a~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (386)
                      |+++|+++|+|++|+.+....+...++|+++.|+||++++++++++|+++++++.+.+.+.......+...++..++++.
T Consensus       177 a~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  256 (392)
T 3qhx_A          177 GADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM  256 (392)
T ss_dssp             HHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             HHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999988776777789999999999999776657899999987777777777777677888889999988


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcce
Q 016612          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFS  323 (386)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g  323 (386)
                      .+++.+..+.++..++++.+.+++++++.+..+.+++++.++++.++.+..++.+++++|.+.+ ....+++++.++..+
T Consensus       257 ~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~  336 (392)
T 3qhx_A          257 RGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFI  336 (392)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCce
Confidence            8999888999999999999999999998888889999999999998888888899999999965 566889999999999


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      +.++.|+..++++.|...++..++.+   ..++.++.||+|++.++++++++.|.++|+
T Consensus       337 ~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg~e~~~~~i~~l~~al~  392 (392)
T 3qhx_A          337 LAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLDDLKQALG  392 (392)
T ss_dssp             ECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             ECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            99999999999888988877766554   567789999999999999999999999874

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=1.5e-45  Score=345.75  Aligned_cols=378  Identities=38%  Similarity=0.645  Sum_probs=326.1

Q ss_pred             CCCCccceeeccCCCCCCCCCcccceeeeeeeecCCC--------CCCCCccccCCCCchHHHHHHHHHhhcCCCceEEe
Q 016612            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (386)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (386)
                      .+.+++++.++.| ..+.+|.+.+|+++++++..++.        .....+.|++.++|...++++.+++++|.++.+++
T Consensus         2 ~~~~~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~   80 (389)
T 3acz_A            2 TAQDITTTLLHPK-GDHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAF   80 (389)
T ss_dssp             -CCCHHHHHHSCS-SCCSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCcceeEEecC-CCCCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence            3456788999999 55568999999999999887553        12345778888889999999999999999999999


Q ss_pred             CcHHHHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccc
Q 016612           77 TSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (386)
Q Consensus        77 ~~gt~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~  155 (386)
                      ++|++|+.++ .+++++||+|+++++.|+++...+...++..|++++.++..|++++++.+++++++|++++|+||+|.+
T Consensus        81 ~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~  160 (389)
T 3acz_A           81 GSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKV  160 (389)
T ss_dssp             SSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEEESSCTTTCCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCee
Confidence            9999998754 457899999999999999887766666778999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCC
Q 016612          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  235 (386)
Q Consensus       156 ~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~  235 (386)
                      .|+++|.++|+++|+++|+|++|+.+....+...++|+++.|+||+++++++..+|+++++++++.+.+.......+...
T Consensus       161 ~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~  240 (389)
T 3acz_A          161 SDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLM  240 (389)
T ss_dssp             CCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCC
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999887765566678999999999999877653249999986356666665555456667


Q ss_pred             ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHH
Q 016612          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV  315 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l  315 (386)
                      ++..+++...+++.+..+.++..++++.+.+++++++.++.+++++|++++++.++.+..++.+++++|.+.+.....++
T Consensus       241 ~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~  320 (389)
T 3acz_A          241 APMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKL  320 (389)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSHHHHHHH
T ss_pred             CHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECCHHHHHHH
Confidence            88888888888888888889999999999999999988889999999999999888766567889999999665667788


Q ss_pred             HhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      ++.+++.....+.|+..+++.+|+..++..++++.+...|+.+++||+|++.++++++++.|.++|++
T Consensus       321 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~~  388 (389)
T 3acz_A          321 MEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALEL  388 (389)
T ss_dssp             HTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHTC
T ss_pred             HHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            88888877788889999999999999999999988888899899999999999999999999999975

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=2.4e-46  Score=352.34  Aligned_cols=372  Identities=26%  Similarity=0.443  Sum_probs=316.8

Q ss_pred             CccceeeccCCCCC-CCCCcccceeeeeeeecCCCC--------C-CCCccccCCCCchHHHHHHHHHhhcCCCceEEeC
Q 016612            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (386)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (386)
                      +++|++++.|..++ .+|.+.+|+++++++..++..        . .+.+.|++.++|.++++++.+++++|.++.++++
T Consensus        25 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~s  104 (415)
T 2fq6_A           25 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP  104 (415)
T ss_dssp             CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CcCceeEeCCCCCCCCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeC
Confidence            57799999996644 489999999999999876542        1 3457789889999999999999999999999999


Q ss_pred             cHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccc
Q 016612           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (386)
Q Consensus        78 ~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~  156 (386)
                      +|++|++ ++.+++++||+|+++++.|+++...+...++..|++++.++.+|+++++++++++|++|++++|+||+|.+.
T Consensus       105 sGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~  184 (415)
T 2fq6_A          105 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH  184 (415)
T ss_dssp             SHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEEECCCCCCCEee
Confidence            9999987 455688999999999999999887776677788999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHH--cCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCC
Q 016612          157 DIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (386)
Q Consensus       157 ~l~~i~~la~~--~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~  234 (386)
                      |+++|.++|++  +|+++|+|++|+.+....+...++|++++|+||++++++++++|+++++++ +.+.+.......+..
T Consensus       185 dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~~~~~G~~  263 (415)
T 2fq6_A          185 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQM  263 (415)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHHHHhcCCC
Confidence            99999999999  999999999999876666677799999999999998776666899998764 555565555555667


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC---HHh
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LAL  311 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~  311 (386)
                      +++..+++...+++.+..++++..+++..+.++|++.+.+..+.+++++.++++.++.++.++.+++++|.+++   ...
T Consensus       264 ~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~  343 (415)
T 2fq6_A          264 VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEE  343 (415)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHH
T ss_pred             CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHH
Confidence            77887887778888888899999999999999999998887888999999998888776656678999999975   567


Q ss_pred             HHHHHhhcCcceeccCCCCccccccc--cccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          312 SKHVVETTKYFSITVSFGSVKSLISM--PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       312 ~~~l~~~l~~~gi~~~~G~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ...+++.++..++.++.|+.+++..+  |+..++....    ...|..++.||+|+|.++++++++.+.++|+++
T Consensus       344 ~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~----~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~  414 (415)
T 2fq6_A          344 LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ----GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  414 (415)
T ss_dssp             HHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTT----CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCcCeEeccCCCCceeEEecCCCccccccch----hhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence            89999999999999999999998877  7655432100    123566799999999999999999999999864

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=1.7e-44  Score=338.77  Aligned_cols=377  Identities=40%  Similarity=0.671  Sum_probs=316.3

Q ss_pred             CCCccceeeccCCCCCCCCCcccceeeeeeeecCCCCCC-CCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH
Q 016612            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (386)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~   84 (386)
                      +-++++++++.|...+.+|.+.+|+++++++..++.... ..+.|++.+.+..+++++.+++++|.++.+++++|++|++
T Consensus         5 ~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~   84 (393)
T 1n8p_A            5 SDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTA   84 (393)
T ss_dssp             SCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHH
T ss_pred             CCCccceEEecCCCccCCCCcCCCcccccceeeccccccccCcceecCCChhHHHHHHHHHHHhCCCcEEEECChHHHHH
Confidence            336789999998655578999999999999988654432 4567887777889999999999999999999999999997


Q ss_pred             HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHH
Q 016612           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (386)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l  164 (386)
                      +++.++++||+|+++.+.|++....+...++..|.+++.++.+| +++++++++++++|++++|+||+|.+.|+++|.++
T Consensus        85 ~al~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~l  163 (393)
T 1n8p_A           85 TILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADL  163 (393)
T ss_dssp             HHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred             HHHHHcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHH
Confidence            54448899999999999998776555557788899999999888 99999999899999999999999999999999999


Q ss_pred             HHHc----CCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceE-EEEEEcChhHHHHHHHhhhhcCCCCChhh
Q 016612          165 AHAH----GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAEGSGLAPFD  239 (386)
Q Consensus       165 a~~~----~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (386)
                      |+++    |+++|+|++|+.+...++...++|++++|+||+++ ++|.|. |+++++++.+.+.+.......+...++..
T Consensus       164 a~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g-~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~  242 (393)
T 1n8p_A          164 IKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYIN-GHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFD  242 (393)
T ss_dssp             HHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             HHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECccccc-CCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHH
Confidence            9999    99999999998776555666789999999999995 456666 99998656666666655554555667777


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCC-cceEecCCCCCCCchhhhhhccCC-C-CceEEEEeC-CHHhHHHH
Q 016612          240 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHYSQAKG-A-GSVLSFLTG-SLALSKHV  315 (386)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~l~~~~~~~i~~~~~~~-~-~~~~~~~~~-~~~~~~~l  315 (386)
                      ++++..+++.+..+.++..++++.+.+++++.+. +..+.++++...+++.++....++ . +++++|.++ .....+.+
T Consensus       243 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~  322 (393)
T 1n8p_A          243 AWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKF  322 (393)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHH
Confidence            7777778888888889999999999999998876 666778888888887777654444 5 789999996 44568899


Q ss_pred             HhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ++.++..++.++.|++.++..+|+...|..++.+.+.+.|..++.||+|++.++++++++.+.++|+++
T Consensus       323 l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          323 ASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             HHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            999999999999999988888888888887777777788888899999999999999999999999764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=6.7e-44  Score=335.99  Aligned_cols=375  Identities=36%  Similarity=0.639  Sum_probs=318.2

Q ss_pred             CccceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcH
Q 016612            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (386)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (386)
                      ++++++++.|......+.+.+|+++++.+..++..        ....+.|++.|.|..+++++.+++++|.++.+++++|
T Consensus         7 ~~~t~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~~~g   86 (404)
T 1e5e_A            7 TPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSG   86 (404)
T ss_dssp             CHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred             CccceeeecCCCCCCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEeCCh
Confidence            35788899885434579999999998888775542        2346778887888999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccH
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l  158 (386)
                      ++++. ++.+++++||+|++++|.|+++...+...++..|++++.++..|++++++.+++++++|++++|+||||.+.|+
T Consensus        87 ~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l  166 (404)
T 1e5e_A           87 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDM  166 (404)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEEECCCCCCCcccCH
Confidence            99987 45568899999999999999987766556778999999999989999999999999999999999999999999


Q ss_pred             HHHHHHHHH-cCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceE-EEEEEcChhHHHHHHHhhhhc-CCCC
Q 016612          159 RKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAE-GSGL  235 (386)
Q Consensus       159 ~~i~~la~~-~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~-G~i~~~~~~~~~~~~~~~~~~-~~~~  235 (386)
                      ++|.++|++ +|+++|+|++|+.+....+...++|+++.|+||++++++ .|+ |+++++++.+.+.+....... +...
T Consensus       167 ~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g-~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~  245 (404)
T 1e5e_A          167 ERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHT-DVVAGLICGKADLLQQIRMVGIKDITGSVI  245 (404)
T ss_dssp             HHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSS-CCCCEEEEECHHHHHHHHHTCCCCCCCCCC
T ss_pred             HHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCC-CCeEEEEEECHHHHHHHHHHHHHhCCCCCC
Confidence            999999999 999999999999877555556789999999999997764 575 999998654443565554444 5567


Q ss_pred             ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHH
Q 016612          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKH  314 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~  314 (386)
                      ++..++++..+++.+..+.++..++.+.+.+++++++.+...++++|+++|++.++.+..++.++++.|.+++. +...+
T Consensus       246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  325 (404)
T 1e5e_A          246 SPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKK  325 (404)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHH
T ss_pred             CHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHH
Confidence            78888888888888888888889999999999999887778899999999999888766567799999998764 45677


Q ss_pred             HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       315 l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      +++++++.....++|+..+++++|+...+..++.+.+...|+.+++||||++.++++++++.|++++++
T Consensus       326 ~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          326 LLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDA  394 (404)
T ss_dssp             HHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            888888766778889999999999999998888888888888889999999999999999999999875

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=2.5e-43  Score=331.86  Aligned_cols=378  Identities=37%  Similarity=0.620  Sum_probs=301.9

Q ss_pred             CCccceeeccCCCC-CCCCCcccceeeeeeeecCCCCC--------CCCccccCCCCchHHHHHHHHHhhcCCCceEEeC
Q 016612            7 PGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (386)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (386)
                      .++++++++.|..+ +.+|.+.+|++.++++..++...        ...+.|++.+.+..+++++.+++++|.++.++++
T Consensus         8 ~~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~~   87 (398)
T 1gc0_A            8 PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALA   87 (398)
T ss_dssp             CCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CCcCceeEeCCCCCCCCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence            35678899998654 35899999999999887765421        1234566667789999999999999999999999


Q ss_pred             cHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccc
Q 016612           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (386)
Q Consensus        78 ~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~  156 (386)
                      +|++|+. ++.+++++||+|+++++.|+++...+...++..|++++.++..|++++++.+++++++|++++|+||+|.+.
T Consensus        88 sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~  167 (398)
T 1gc0_A           88 SGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMA  167 (398)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCcccc
Confidence            9999987 556678999999999999999887766666788999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh-cCCCC
Q 016612          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGSGL  235 (386)
Q Consensus       157 ~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~-~~~~~  235 (386)
                      |+++|.++|+++|+++|+|++|+.+....+...++|+++.|+||+++++++..+|+++++++.+.+.+...... .+...
T Consensus       168 ~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
T 1gc0_A          168 DIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL  247 (398)
T ss_dssp             CHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCC
T ss_pred             cHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCC
Confidence            99999999999999999999998776655566789999999999997765433599998765454445554444 55667


Q ss_pred             ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHH
Q 016612          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKH  314 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~  314 (386)
                      ++..++++..+++.+..+.++..++++.+.+++++.+.+..+.++++++++++.++.+..++.+++++|.+.+ .....+
T Consensus       248 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  327 (398)
T 1gc0_A          248 SPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRR  327 (398)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHH
T ss_pred             CHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHH
Confidence            7888888888888888899999999999999999988888888999999999888866555679999999964 355778


Q ss_pred             HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       315 l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      +++++++.+...++|+..+++++|...++...+.+.+...|+.+++||+|++.++++++++.+.++|+++
T Consensus       328 ~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          328 FMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             HHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence            8899988888889999999999999999988998888889998999999999999999999999999763

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=3.3e-42  Score=324.29  Aligned_cols=380  Identities=40%  Similarity=0.680  Sum_probs=316.0

Q ss_pred             CCCCccceeeccCCCCC-CCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEE
Q 016612            5 EEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (386)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~   75 (386)
                      .+.++++++++.|...+ ..+.+.+|++.++....+...        ....+.|++.+.+..+++++++++++|.++.++
T Consensus         5 ~~~~~~t~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~   84 (398)
T 2rfv_A            5 RTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLA   84 (398)
T ss_dssp             GGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             ccCCCceeEeecCCcCccCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEE
Confidence            34467789999986533 478889999988877665432        134456666667789999999999999999999


Q ss_pred             eCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcc
Q 016612           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (386)
Q Consensus        76 ~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~  154 (386)
                      +++|++|+. ++.+++++||+|++++|.|+++...+...++..|.+++.++..|++++++.+++++++|++++|+||||.
T Consensus        85 ~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  164 (398)
T 2rfv_A           85 TASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLS  164 (398)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSBTTTTB
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCc
Confidence            999999987 5566789999999999999998766655557889999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceE-EEEEEcChhHHHHHHHhhhhc-C
Q 016612          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAE-G  232 (386)
Q Consensus       155 ~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~-G~i~~~~~~~~~~~~~~~~~~-~  232 (386)
                      +.|+++|.++|+++|+++|+|++|+.+....+...+.|+++.|+||++++++ .|. |+++++++.+.+.+....... +
T Consensus       165 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~~~~~  243 (398)
T 2rfv_A          165 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHG-DVIGGIIVGKQEFIDQARFVGLKDITG  243 (398)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSS-CCCCEEEEECHHHHHHHHHTHHHHTTC
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCC-CceEEEEEECHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999877665666789999999999997765 455 999987554443555555544 5


Q ss_pred             CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHh
Q 016612          233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LAL  311 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~  311 (386)
                      ...++..++++..+++.+..+.++..++.+.+.+++++.+.+..+.++++++++++.++.+..++.+++++|.+++ ...
T Consensus       244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~  323 (398)
T 2rfv_A          244 GCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEA  323 (398)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred             CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHH
Confidence            5677788888888888888888888899999999999988788888999999999888865545678999999975 345


Q ss_pred             HHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 016612          312 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       312 ~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  385 (386)
                      ...+++.++..++.+++|..++++.+|+...+..++.+.+...|..+++||+|++.++++++++.+.++|++++
T Consensus       324 ~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~  397 (398)
T 2rfv_A          324 GRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKAT  397 (398)
T ss_dssp             HHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhhc
Confidence            77899999999999999999998888888777777777777778888999999999999999999999998653

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=7.1e-42  Score=323.90  Aligned_cols=374  Identities=33%  Similarity=0.491  Sum_probs=309.9

Q ss_pred             ccceeeccCCCCC-CCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcH
Q 016612            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (386)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (386)
                      ++++.++.|...+ .+|.+.+|+++++++..++..        ....+.|++.+++...++++.+++++|.++.+++++|
T Consensus         3 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sG   82 (421)
T 2ctz_A            3 FETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASG   82 (421)
T ss_dssp             HHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred             cceeeeeCCCCCCcCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEecCH
Confidence            5678888886544 589999999999998876531        2335678887778899999999999999888999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEe-CCCCHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                      ++|+. ++..++++||+|+++.+.|+++...+...++..|++++.+ +.+|++++++++++++++|++++++||+|.+.|
T Consensus        83 t~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~  162 (421)
T 2ctz_A           83 HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPD  162 (421)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEEECCCCCCCcccC
Confidence            99987 4555789999999999999998776655567889999999 988999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCC-CCCCccCCCCCCccEEEeccccccccCCCceEEEEEEc-ChhH----HHHHH------
Q 016612          158 IRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-GERL----AKELY------  225 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~-~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~-~~~~----~~~~~------  225 (386)
                      +++|.++|+++|+++|+|++| +.+....+...++|++++|+||+++++++..+|+++.+ +..+    .+.+.      
T Consensus       163 l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~  242 (421)
T 2ctz_A          163 LEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY  242 (421)
T ss_dssp             HHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGG
T ss_pred             HHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchh
Confidence            999999999999999999999 77765556667899999999999987654334555542 2111    01111      


Q ss_pred             -------------------H-hhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCC
Q 016612          226 -------------------F-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  285 (386)
Q Consensus       226 -------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  285 (386)
                                         . .....+..+++..+++...+++.+..+.++..++++.+.++|++++.+..+.++++...
T Consensus       243 ~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~  322 (421)
T 2ctz_A          243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHH  322 (421)
T ss_dssp             TTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTC
T ss_pred             hhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCC
Confidence                               0 01224557788888888888998888888888999999999999988777777888888


Q ss_pred             Cchhhhhhcc-CCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 016612          286 PGHELHYSQA-KGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  363 (386)
Q Consensus       286 ~~~~i~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  363 (386)
                      +.+.+..++. ++.+++++|.+.+ ......++++++..++..+.|+..+++.+|+..+|..++.+.+...|+.++.||+
T Consensus       323 ~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRl  402 (421)
T 2ctz_A          323 PHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRL  402 (421)
T ss_dssp             TTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEE
T ss_pred             CCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEE
Confidence            8877765543 5689999999976 3568899999999999999999999999999999999999888899999999999


Q ss_pred             EeccCChHHHHHHHHHHHh
Q 016612          364 SVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       364 s~~~~~~~~~i~~l~~~l~  382 (386)
                      |++.++++++++.|+++|+
T Consensus       403 S~g~e~~~~li~~l~~al~  421 (421)
T 2ctz_A          403 SVGLEHVEDLKAELKEALA  421 (421)
T ss_dssp             ECCSSCHHHHHHHHHHHTC
T ss_pred             EeCCCCHHHHHHHHHHHhC
Confidence            9999999999999999874

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=2e-41  Score=317.74  Aligned_cols=375  Identities=38%  Similarity=0.584  Sum_probs=306.8

Q ss_pred             CccceeeccCCCC-CCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHH-
Q 016612            8 GVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-   85 (386)
Q Consensus         8 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-   85 (386)
                      ++++++++.|... +.+|.+.+|+++++.+...+......+.|++.+++...++++.++++++.++.+++++|++++.. 
T Consensus         4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~   83 (386)
T 1cs1_A            4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   83 (386)
T ss_dssp             CHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             CcceeEEecCCCccccCCCCCCCccccceeeccccCCCCCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHH
Confidence            4568889988543 45899999999999998765554456778777888899999999999998888999999999874 


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la  165 (386)
                      +..++++||+|++++|.|+++...+...++..|.+++.++..|++++++.+++++++|++++|+||||.+.|+++|.++|
T Consensus        84 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~  163 (386)
T 1cs1_A           84 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  163 (386)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHH
T ss_pred             HHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHH
Confidence            55578999999999999998766665666788999999999999999999988999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      +++|+++|+|++|+.+....+...++|+++.|+||+++++++..+|+++++++++.+.+.......+...++..+++...
T Consensus       164 ~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  243 (386)
T 1cs1_A          164 REVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  243 (386)
T ss_dssp             HHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHH
T ss_pred             HHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999998776655556789999999999997775533599999865676666655555455567777777667


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceec
Q 016612          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  325 (386)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~  325 (386)
                      +++.+..+.+...++.+.+.+++++.+.+....++++.+++++.++.+..++.+++++|.+.+.  .+.+.+.+...|+.
T Consensus       244 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~  321 (386)
T 1cs1_A          244 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD--EQTLRRFLGGLSLF  321 (386)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC--HHHHHHHHHTCSSS
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC--HHHHHHHHHhCCcc
Confidence            7777777888889999999999999887777788999999998888665566789999998642  23333334344555


Q ss_pred             cC---CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          326 VS---FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       326 ~~---~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ++   +|+..++++.|....+...+...+...|..++++|+|++.++++++++.+.++|+++
T Consensus       322 ~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          322 TLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             EEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             eEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            44   787788888888877777777777777888899999999999999999999999764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=100.00  E-value=3.5e-40  Score=311.69  Aligned_cols=373  Identities=32%  Similarity=0.532  Sum_probs=304.8

Q ss_pred             ccceeeccCCCCCCCCCcccceeeeeeeecCCCC-------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHH
Q 016612            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMA   81 (386)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~   81 (386)
                      ++++.++.|...+.+|.+.+|+++++++..+...       ....+.|++.+.+..+++++.+++++|.++.+++++|++
T Consensus         3 ~~t~~~~~~~~~~~~~~~~~pi~~s~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~   82 (412)
T 2cb1_A            3 YTTLAVLAGLPEDPHGAVGLPIYAVAAYGFKTLEEGQERFATGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQA   82 (412)
T ss_dssp             HHHHHHHTTCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHHHCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHH
T ss_pred             ccceeeecCCCcCCCCCcCCCccccceeecCChHHHHHHhccccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHH
Confidence            5678888885555689999999998777654321       234567887777889999999999999998999999999


Q ss_pred             HHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHH
Q 016612           82 ALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK  160 (386)
Q Consensus        82 al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~  160 (386)
                      |+.. +.+++++||+|+++.+.|+++...+...++..|.+++.++. |++++++++++++++|++++|+||+|.+.|+++
T Consensus        83 a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~  161 (412)
T 2cb1_A           83 ATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAVREALSAKTRAVFVETVANPALLVPDLEA  161 (412)
T ss_dssp             HHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS-SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-CHHHHHHHhccCCeEEEEeCCCCCCcccccHHH
Confidence            9874 55578999999999999998876666667788999999987 499999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCCCCC-CccCCCCCCccEEEeccccccccCCCceEEEEEEcCh---------------------
Q 016612          161 IAEMAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------------------  218 (386)
Q Consensus       161 i~~la~~~~~~li~D~a~~~~-~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~---------------------  218 (386)
                      |.++|+++|+++|+|++|+.+ ....+...+.|++++|+||++++|++..+|+++.+++                     
T Consensus       162 i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (412)
T 2cb1_A          162 LATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWE  241 (412)
T ss_dssp             HHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HH
T ss_pred             HHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhh
Confidence            999999999999999999877 4445556689999999999998776533444444423                     


Q ss_pred             -----hHHHHHHHhh-hhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhh
Q 016612          219 -----RLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  292 (386)
Q Consensus       219 -----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~  292 (386)
                           ++.+.++... ...+..+.+...++...+++.+..+.++..++.+.+.++|.+.+.+..+..+++...|.+....
T Consensus       242 ~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~  321 (412)
T 2cb1_A          242 ALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNAR  321 (412)
T ss_dssp             HHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHH
Confidence                 2333333332 3334456777788877888888888888888999999999988777667778888888888777


Q ss_pred             hccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHH
Q 016612          293 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  372 (386)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~  372 (386)
                      ++.++.+++++|.+++.+...++++++++.. ..+.|+..+++.+|+...+..+++..+.+.|+.++.||+|++.+++++
T Consensus       322 ~~~~~~~~iv~~~~~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~  400 (412)
T 2cb1_A          322 KYLASGGPILTLDLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLD  400 (412)
T ss_dssp             HHCSSSCSEEEEECSSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHH
T ss_pred             HhCCCCceEEEEEeCCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHH
Confidence            6666788999999955556777888888777 788889999988998888888888888889998999999999999999


Q ss_pred             HHHHHHHHHhc
Q 016612          373 LISDLDKALRT  383 (386)
Q Consensus       373 ~i~~l~~~l~~  383 (386)
                      +++.+.++|++
T Consensus       401 ~i~~l~~al~~  411 (412)
T 2cb1_A          401 LLALFEEALEA  411 (412)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999999976

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=100.00  E-value=7.7e-38  Score=287.23  Aligned_cols=325  Identities=41%  Similarity=0.662  Sum_probs=266.4

Q ss_pred             HHHHHHHhhcCCCceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC
Q 016612           59 ALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG  137 (386)
Q Consensus        59 ~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~  137 (386)
                      ++++.+++++|.++.+++++|++++.. +.+++++||+|++++|.|+++...+...++..|.+++.++..|++++++.++
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~   81 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence            678899999999999999999999875 4557899999999999999987665544566899999999889999999999


Q ss_pred             CCceEEEEeCCCCCCcccccHHHHHHHHHH-cCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCce-EEEEEE
Q 016612          138 PWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM-AGVLAV  215 (386)
Q Consensus       138 ~~~~~v~~~~~~nptG~~~~l~~i~~la~~-~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~-~G~i~~  215 (386)
                      +++++|++++|+||||.+.|+++|.++|++ +|+++|+|++|+.+....+...++|++++|+||++++|+ .| +|++++
T Consensus        82 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~-~r~~G~~~~  160 (331)
T 1pff_A           82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHT-DVVAGLVCS  160 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSS-SCCCEEEEE
T ss_pred             CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCC-CceEEEEEe
Confidence            999999999999999999999999999999 999999999998776544446689999999999997765 45 799998


Q ss_pred             cChhHHHHHHHhhhh-cCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhc
Q 016612          216 KGERLAKELYFLQNA-EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  294 (386)
Q Consensus       216 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~  294 (386)
                      +++++.+.+...... .+...++..++.+..+++.+..+.+...++.+.+.+++++++.+...+++++.+++++.++...
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~  240 (331)
T 1pff_A          161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ  240 (331)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhh
Confidence            753676666665554 4556666666666666666667777888899999999998877778899999999998887665


Q ss_pred             cCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHH
Q 016612          295 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI  374 (386)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i  374 (386)
                      .++.+++++|.+.+.+...+++++.++.....+.|+..+++.+|....+...+.+.+...|..++++|+|++.+++++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i  320 (331)
T 1pff_A          241 MKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDII  320 (331)
T ss_dssp             CSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHH
T ss_pred             CCCCceEEEEEECCHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHH
Confidence            56678999999875544555555544433356678878888888777777777777777888889999999999999999


Q ss_pred             HHHHHHHhcC
Q 016612          375 SDLDKALRTG  384 (386)
Q Consensus       375 ~~l~~~l~~~  384 (386)
                      +.+.++|+++
T Consensus       321 ~~l~~~l~~~  330 (331)
T 1pff_A          321 DDLKQALDLV  330 (331)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.97  E-value=7.4e-30  Score=240.63  Aligned_cols=325  Identities=18%  Similarity=0.141  Sum_probs=220.7

Q ss_pred             ceeeccCCCCCCCCC-cccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC-----CceEEeCcHHHH
Q 016612           11 TLLMNFSNEFDPYGA-LSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA-----DRALCFTSGMAA   82 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~-----~~~i~~~~gt~a   82 (386)
                      ..+++++ .+++.+. .++.+.++....   +.......|... |.+ +++++++++++++|.     ++.+++++|+++
T Consensus        39 ~~~id~~-~g~~~~~~~~~~v~~a~~~~---~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a  114 (407)
T 3nra_A           39 GRPVDFS-HGDVDAHEPTPGAFDLFSAG---VQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA  114 (407)
T ss_dssp             SCCEETT-SCCTTTSCCCTTHHHHHHHH---HHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred             Cceeeec-CcCCCCCCCcHHHHHHHHHH---HhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHH
Confidence            3478888 4455432 333333321111   111123357665 665 899999999999886     456666777799


Q ss_pred             HHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-----------CCHHHHHhhhCCCceEEEEeCCCC
Q 016612           83 LAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------CDLDEVASAIGPWTKLVWVESPTN  150 (386)
Q Consensus        83 l~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----------~d~~~l~~~~~~~~~~v~~~~~~n  150 (386)
                      +.. +.+++++||+|++++|+|.++.    ..++..|.+++.++.           .|++++++.+++++++|++++|+|
T Consensus       115 ~~~~~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~n  190 (407)
T 3nra_A          115 LFLAVAATVARGDKVAIVQPDYFANR----KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNN  190 (407)
T ss_dssp             HHHHHHTTCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCT
T ss_pred             HHHHHHHhCCCCCEEEEcCCcccchH----HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCC
Confidence            875 4557899999999999999885    445577888888876           189999999988999999999999


Q ss_pred             CCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----CC-----CCCCccEEEeccccccccCCCceEEEEEEcC
Q 016612          151 PRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (386)
Q Consensus       151 ptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-----~~-----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~  217 (386)
                      |||.+.+   +++|.++|++||+++|+|++|+...+.     ..     ...+.++++.|+||++ |.+|+|+|+++++ 
T Consensus       191 ptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-  268 (407)
T 3nra_A          191 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTE-SLSGYRLGVAFGS-  268 (407)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTT-CCGGGCCEEEEEC-
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCccccc-CCCeeeEEEEEcC-
Confidence            9999998   999999999999999999999753321     11     1245679999999999 5457899999986 


Q ss_pred             hhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhh
Q 016612          218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  293 (386)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~  293 (386)
                      +.+.+.+...........++..+.++...++.    +..+.++..++.+.+.+.+++.+.        +....       
T Consensus       269 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--------~~~~~-------  333 (407)
T 3nra_A          269 RAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEG--------VFART-------  333 (407)
T ss_dssp             HHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTT--------CBCCC-------
T ss_pred             HHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCC--------ceecc-------
Confidence            55666665555544445555555555554432    455556666667777777765431        11110       


Q ss_pred             ccCCCCceEEEEeCC-HHhHHHHHhhcC-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CC
Q 016612          294 QAKGAGSVLSFLTGS-LALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--ED  369 (386)
Q Consensus       294 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~  369 (386)
                        ...+.++++.++. ......+.+.+. ..|+.+.+|..+.                     ...++++|||++.  ++
T Consensus       334 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---------------------~~~~~~iRis~~~~~~~  390 (407)
T 3nra_A          334 --PQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS---------------------PHTADSVRLNFSQDHEA  390 (407)
T ss_dssp             --CSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC---------------------TTCTTBEEEECCSCHHH
T ss_pred             --CCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC---------------------CCCCCEEEEEeCCCHHH
Confidence              1123555555543 233556666664 3588777765422                     0136789999974  66


Q ss_pred             hHHHHHHHHHHHhc
Q 016612          370 VNDLISDLDKALRT  383 (386)
Q Consensus       370 ~~~~i~~l~~~l~~  383 (386)
                      ++++++.|++++++
T Consensus       391 i~~~~~~l~~~~~~  404 (407)
T 3nra_A          391 AVAAARRIVTLVER  404 (407)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77788888888765

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.97  E-value=2.5e-29  Score=236.28  Aligned_cols=284  Identities=15%  Similarity=0.145  Sum_probs=209.7

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHH
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA  133 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  133 (386)
                      +...++++.+++++|.++.+++++|++++. ++.+++++||.|++++|.|+++.    ..++..|.+++.++..|+++++
T Consensus        88 ~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~  163 (399)
T 3tqx_A           88 TIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASII----DGIRLCKAQRYRYKNNAMGDLE  163 (399)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHH----HHHHSCCSEEEEECTTCTTHHH
T ss_pred             hHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHH----HHHHHcCCceeEeCCCCHHHHH
Confidence            478999999999999999999999998876 56668899999999999999885    4556789999999988999999


Q ss_pred             hhhCC------CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCC-------C--CCCccEEEecc
Q 016612          134 SAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-------L--ELGADIVMHSA  198 (386)
Q Consensus       134 ~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-------~--~~~~di~~~S~  198 (386)
                      +.+++      ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.....       .  ..+.|++++|+
T Consensus       164 ~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~  243 (399)
T 3tqx_A          164 AKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTL  243 (399)
T ss_dssp             HHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEES
T ss_pred             HHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecc
Confidence            88874      899999999999999999999999999999999999999975543211       1  12679999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHhhh--hcCCCCChhhHHHHHhcCCc----HHHHHHHHHHHHHHHHHHHhhCC
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      ||+++|++   +|++++++ ++.+.+.....  ......++....++...++.    .....++..++.+.+.+.+++..
T Consensus       244 sK~~~g~~---gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  319 (399)
T 3tqx_A          244 GKALGGAS---GGYTSGHK-EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLG  319 (399)
T ss_dssp             SSSSCSSC---CEEEEECH-HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHhcccCc---eEEEEcCH-HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            99997454   59999874 45554544321  22334555555554444432    23444555566666666666431


Q ss_pred             CcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHH
Q 016612          273 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  352 (386)
Q Consensus       273 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~  352 (386)
                               ++      +.    ...++++++.+++.....++.+.+...|+.+.++....      .            
T Consensus       320 ---------~~------~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~------~------------  362 (399)
T 3tqx_A          320 ---------FQ------LV----PGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPV------V------------  362 (399)
T ss_dssp             ---------CC------BC----CCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTT------S------------
T ss_pred             ---------CC------cC----CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCC------C------------
Confidence                     11      11    23578889988776667788888888888776543210      0            


Q ss_pred             hcCCCCCeEEEEec----cCChHHHHHHHHHHHhcCC
Q 016612          353 ARGLTEDLVRISVG----IEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       353 ~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~~  385 (386)
                        ...++++|++++    .++++++++.|++++++.+
T Consensus       363 --~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  397 (399)
T 3tqx_A          363 --PMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG  397 (399)
T ss_dssp             --CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             --CCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence              113568999996    3788889999999888764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.97  E-value=7e-29  Score=232.62  Aligned_cols=296  Identities=16%  Similarity=0.185  Sum_probs=205.5

Q ss_pred             CccccCCCCchHHHHHHHHHhhcC--C--CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           46 PYDYTRSGNPTRDALESLLAKLDK--A--DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~g--~--~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      .+.|.+...++++++++++++.+|  .  ++.+++++|++++. ++.+++++||+|++++|+|+++.    ..++..|.+
T Consensus        57 ~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~  132 (391)
T 3dzz_A           57 AFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFY----SVIEGNGRR  132 (391)
T ss_dssp             CCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHH----HHHHHTTCE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHH----HHHHHcCCE
Confidence            445655533588999999999887  2  35666666789987 55667899999999999999885    445578899


Q ss_pred             EEEeCC--------CCHHHHHhhhC-CCceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          121 VKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       121 ~~~v~~--------~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      ++.++.        .|+++++++++ +++++|++++|+||||.+.   ++++|.++|+++|+++|+|++|+.....    
T Consensus       133 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~  212 (391)
T 3dzz_A          133 VISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDI  212 (391)
T ss_dssp             EEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred             EEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCc
Confidence            998887        48999999998 7999999999999999994   6899999999999999999998743321    


Q ss_pred             -CCCCCC---cc--EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcC-CCCChhhHHHHHhcCCc----HHHH
Q 016612          185 -RPLELG---AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRGVKT----MALR  253 (386)
Q Consensus       185 -~~~~~~---~d--i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~  253 (386)
                       .....+   .|  +++.|+||++ |.+|+|+|+++++++++.+.+.......+ ...+...+.++...+..    +...
T Consensus       213 ~~~~~~~~~~~d~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  291 (391)
T 3dzz_A          213 TPAFTVDWDAKNWVVSLISPSKTF-NLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLREL  291 (391)
T ss_dssp             CCGGGSCTTTGGGEEEEECSHHHH-TCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHH
T ss_pred             eehhhcCccccCcEEEEEeChhhc-cccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence             111211   44  9999999999 55678999999986777766655543222 23444444443333322    3444


Q ss_pred             HHHHHHHHHHHHHHHhh-CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHHHHhhcC-cceeccCCCC
Q 016612          254 VEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTK-YFSITVSFGS  330 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~~gi~~~~G~  330 (386)
                      .+...++.+.+.+.+++ .+.+              .++  . ...+.++++.++.. .....+.+.+. ..|+.+++|.
T Consensus       292 ~~~~~~~~~~l~~~l~~~~~~~--------------~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~  354 (391)
T 3dzz_A          292 KQVLRDNFAYAREFLAKEVPEV--------------KVL--D-SNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGN  354 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTS--------------EEC--C-CCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESG
T ss_pred             HHHHHHHHHHHHHHHHhhCCCc--------------EEe--c-cCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCch
Confidence            55556666667777765 3321              111  0 11234445666432 24667777773 7789888776


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      .+..                     ..++++|||++.  +++++.++.|.+++++.
T Consensus       355 ~~~~---------------------~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          355 GYRG---------------------NGHEFVRINLACPKELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             GGCT---------------------TGGGEEEEECCSCHHHHHHHHHHHHHHHHTC
T ss_pred             hhCC---------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            5220                     125779999973  67788888888888764

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.97  E-value=1.3e-28  Score=231.58  Aligned_cols=290  Identities=16%  Similarity=0.194  Sum_probs=208.1

Q ss_pred             cccCC-CC-chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           48 DYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        48 ~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      .|... |. ++++++++++++++|.++.+++++|++++. ++.+++++||.|++++|.|+++.    ..++..|.+++.+
T Consensus        79 ~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~----~~~~~~g~~~~~v  154 (398)
T 3a2b_A           79 GSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASII----DGSRLSFSKVIKY  154 (398)
T ss_dssp             SBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHH----HHHHHSSSEEEEE
T ss_pred             CcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHH----HHHHHcCCceEEe
Confidence            34443 55 489999999999999988888999999987 45567899999999999999886    3455679999999


Q ss_pred             CCCCHHHHHhhhCC----CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----CCCC-----CCc
Q 016612          125 NTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----RPLE-----LGA  191 (386)
Q Consensus       125 ~~~d~~~l~~~~~~----~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----~~~~-----~~~  191 (386)
                      +..|++++++.+++    ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.+.    ....     .+.
T Consensus       155 ~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~  234 (398)
T 3a2b_A          155 GHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDV  234 (398)
T ss_dssp             CTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGC
T ss_pred             CCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCC
Confidence            99899999998875    7999999999999999999999999999999999999999866431    1111     125


Q ss_pred             cEEEeccccccccCCCceEEEEEEcChhHHHHHHHh-h-hhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHH
Q 016612          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-Q-NAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAE  266 (386)
Q Consensus       192 di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~  266 (386)
                      |++++|+||+++ ++|   ||++++ +++.+.+... . .......++.+.+++...++..   ....+...++.+.+.+
T Consensus       235 di~~~s~sK~~~-~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~  309 (398)
T 3a2b_A          235 DLIMGTFSKSLA-SLG---GFVAGD-ADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA  309 (398)
T ss_dssp             SEEEEESSSTTC-SSC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred             eEEEeccccccc-CCC---cEEEeC-HHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            899999999995 555   899886 5565555443 2 2223334444443333333322   2334445556666666


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCC
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  346 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~  346 (386)
                      .|++..         ++      +.    .+.+.++++.+++......+.+.+...|+.+.+|..+.   .|        
T Consensus       310 ~L~~~g---------~~------~~----~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~---~~--------  359 (398)
T 3a2b_A          310 QLLDHG---------FD------LG----ATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPA---VP--------  359 (398)
T ss_dssp             HHHHTT---------CC------BC----SCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTT---SC--------
T ss_pred             HHHhcC---------CC------cC----CCCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCC---CC--------
Confidence            665431         11      11    12367888888765556778888877788877765421   00        


Q ss_pred             CHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcCC
Q 016612          347 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTGP  385 (386)
Q Consensus       347 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~~  385 (386)
                               ..++++||+++.    ++++++++.|++++++..
T Consensus       360 ---------~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~  393 (398)
T 3a2b_A          360 ---------AEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE  393 (398)
T ss_dssp             ---------GGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             ---------CCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence                     025679999973    778888888888887654

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.97  E-value=1.2e-28  Score=228.76  Aligned_cols=274  Identities=15%  Similarity=0.204  Sum_probs=197.1

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      ...++++.+++++|.+  +.+++++|++++.+ +.+++++||+|++++|+|+++.    ..++..|.+++.++.+     
T Consensus        68 ~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~  143 (363)
T 3ffh_A           68 WASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYR----QNALIEGAEVREIPLLQDGEH  143 (363)
T ss_dssp             -CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHH----HHHHHHTCEEEEEECCTTSCC
T ss_pred             chHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHH----HHHHHcCCEEEEecCCCCCCc
Confidence            4567888888888864  56677777899874 5557899999999999998875    4456678999999876     


Q ss_pred             CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCc-------cCCCCCCccEEEecc
Q 016612          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVL-------SRPLELGADIVMHSA  198 (386)
Q Consensus       128 d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~-------~~~~~~~~di~~~S~  198 (386)
                      |++++++.+++++++|++++|+||||.+.|++++.++++.+  |+++|+|++|+....       ......+.++++.|+
T Consensus       144 d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  223 (363)
T 3ffh_A          144 DLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTF  223 (363)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEES
T ss_pred             CHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeec
Confidence            99999999999999999999999999999999999999887  999999999973221       111123567999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC---cHHHHHHHHHHHHHHHHHHHhhCCCcc
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVK  275 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~  275 (386)
                      ||++ |++|+|+|+++++ +++.+.+.....  ....+...++++...++   .+....++..++.+.+.+.+++...  
T Consensus       224 sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g--  297 (363)
T 3ffh_A          224 SKIY-GLASARVGYGIAD-KEIIRQLNIVRP--PFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEK--  297 (363)
T ss_dssp             SSTT-CCSSCCCEEEEEC-HHHHHHHHHTCC--SCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             hhhh-cCchhceeeeecC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCC--
Confidence            9999 5568899999995 556665655443  23456666665555443   2334445555666666666665321  


Q ss_pred             eEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcC
Q 016612          276 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  355 (386)
Q Consensus       276 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~  355 (386)
                            +      .++    +..+.++++.++.  ....+.+.+...|+.+++|..+.                      
T Consensus       298 ------~------~~~----~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~----------------------  337 (363)
T 3ffh_A          298 ------V------KLY----PANGNFVLIDLGI--EAGTIFSYLEKNGYITRSGAALG----------------------  337 (363)
T ss_dssp             ------C------EEC----CCCSSEEEEECSS--CHHHHHHHHHHTTEECEETTTTT----------------------
T ss_pred             ------c------eEC----CCCCeEEEEECCC--CHHHHHHHHHHCCeEEEeCccCC----------------------
Confidence                  1      111    2246778888864  35667777777788877766421                      


Q ss_pred             CCCCeEEEEecc-CChHHHHHHHHHH
Q 016612          356 LTEDLVRISVGI-EDVNDLISDLDKA  380 (386)
Q Consensus       356 ~~~~~iRis~~~-~~~~~~i~~l~~~  380 (386)
                       .++++|+|++. ++++++++.|+++
T Consensus       338 -~~~~iRis~~~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          338 -FPTAVRITIGKEEDNSAVIALLEKL  362 (363)
T ss_dssp             -CTTEEEEECCCHHHHHHHHHHHHHH
T ss_pred             -CCCeEEEECCCHHHHHHHHHHHHHh
Confidence             15679999973 5667777777654

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.97  E-value=1.2e-28  Score=231.46  Aligned_cols=256  Identities=18%  Similarity=0.187  Sum_probs=205.6

Q ss_pred             hHHHHHHHHHhhcCCCceEE---eCcHHHHHH-HHHHhcCCCCEEEecC-CCCCcHHHHH-------hhhcccCCcEEEE
Q 016612           56 TRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLL-------SRVTPKTGVVVKR  123 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~---~~~gt~al~-~~~~~~~~g~~Vlv~~-~~~~~~~~~~-------~~~~~~~g~~~~~  123 (386)
                      .++++++.+++++|.+..++   ++||++|+. ++.++++|||+|++++ +.|+++...+       ...++..|++++.
T Consensus        74 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~  153 (427)
T 3i16_A           74 GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQ  153 (427)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEE
T ss_pred             HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEE
Confidence            58899999999999998888   899999986 5667899999999999 9998886554       1456678999999


Q ss_pred             eCC-----CCHHHHHhhhC--CCceEEEEeC----CCCCCcccccHHHHHHHHHH--cCCEEEEeCCCCCCC-ccCCCCC
Q 016612          124 VNT-----CDLDEVASAIG--PWTKLVWVES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLEL  189 (386)
Q Consensus       124 v~~-----~d~~~l~~~~~--~~~~~v~~~~----~~nptG~~~~l~~i~~la~~--~~~~li~D~a~~~~~-~~~~~~~  189 (386)
                      ++.     .|+++++++++  +++++|++++    |+||+|.+.|+++|.++|++  +|+++++|++|+.+. ...+...
T Consensus       154 v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~  233 (427)
T 3i16_A          154 VDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDV  233 (427)
T ss_dssp             CCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGG
T ss_pred             ecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCcccc
Confidence            997     59999999998  8999999999    99999999999999999999  999999999999877 4566677


Q ss_pred             CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh--hcCCCCCh-hh-HHHHHhcCCcHHHHHHHHHHHHHHHH
Q 016612          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAP-FD-CWICLRGVKTMALRVEKQQDNAQKIA  265 (386)
Q Consensus       190 ~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  265 (386)
                      ++|++++|+||+++|+...++|+++++ +++.+.+.....  ..+....+ .. ++++++++..+..|.++..+++..+.
T Consensus       234 gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r~~~~~~~a~~la  312 (427)
T 3i16_A          234 GADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISMEALKGAILCS  312 (427)
T ss_dssp             TCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999977544668999987 556665655322  22222222 33 67778888888999999999999999


Q ss_pred             HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceecc
Q 016612          266 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITV  326 (386)
Q Consensus       266 ~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~  326 (386)
                      ++|++++.  .+ +++ .+.+.+          .-+++|.+++.+...++++.+.......
T Consensus       313 ~~L~~~g~--~V-~p~-~~~~~~----------~~i~~i~l~~~~~~~~f~~~l~~~~~~~  359 (427)
T 3i16_A          313 RIMELAGF--EV-MPK-YDEKRS----------DIIQSIKFNDKDKLIEFCKGIQTGSPID  359 (427)
T ss_dssp             HHHHHTTC--EE-ESC-TTSCCS----------SSCEEEECSSHHHHHHHHHHHHHTCSSS
T ss_pred             HHHHhCCC--ee-cCC-CCCCCc----------cEEEEEEECCHHHHHHHHHHHhhcCccc
Confidence            99998863  23 444 333322          2378999988888889999988776543

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.97  E-value=1.5e-28  Score=230.14  Aligned_cols=289  Identities=19%  Similarity=0.245  Sum_probs=193.6

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ..|... |.+ +++++.+++.+.+|.    ++.+++++|++++.+ +.+++++||+|+++.|+|+++.    ..++..|.
T Consensus        62 ~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~  137 (385)
T 1b5p_A           62 TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYP----EMVRFAGG  137 (385)
T ss_dssp             CSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHcCC
Confidence            457665 665 788888888877664    245556666799974 5557899999999999998885    44557788


Q ss_pred             EEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----C
Q 016612          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R  185 (386)
Q Consensus       120 ~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~  185 (386)
                      +++.++.+       |++++++++++++++|++++|+||||.+++   +++|.++|+++|++||+|++|+...+.    +
T Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~  217 (385)
T 1b5p_A          138 VVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFS  217 (385)
T ss_dssp             EEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC
T ss_pred             EEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCC
Confidence            98888763       789999999888999999999999999976   899999999999999999998754331    1


Q ss_pred             CCCC--CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-------HHHHHHH
Q 016612          186 PLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEK  256 (386)
Q Consensus       186 ~~~~--~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  256 (386)
                      ....  +.++++.|+||++ |++|+|+||++++ +.+.+.+.........+.+...+.++...++.       +....+.
T Consensus       218 ~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  295 (385)
T 1b5p_A          218 PGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGP-KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREA  295 (385)
T ss_dssp             GGGTCTTTEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCEEEEEechhhc-CCcccceEEEEeC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            1222  6789999999999 5568999999986 55666565555444445566555555444432       2223334


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLI  335 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~  335 (386)
                      +.++.+.+.+.+++.         ++.      +.  . ...+.++++.+.. .....++.+.+...|+.+.+|..+.  
T Consensus       296 ~~~~~~~l~~~L~~~---------g~~------~~--~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~--  355 (385)
T 1b5p_A          296 YRRRRDLLLEGLTAL---------GLK------AV--R-PSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA--  355 (385)
T ss_dssp             HHHHHHHHHHHHHHH---------TCC------BC--C-CSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGT--
T ss_pred             HHHHHHHHHHHHHHC---------CCe------ec--C-CCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccC--
Confidence            444445555555532         111      11  0 1113345555541 1235567777767788887776421  


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                                           .++++|||++.  +++++.++.|.++++
T Consensus       356 ---------------------~~~~iRis~~~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          356 ---------------------AFGHVRLSYATSEENLRKALERFARVLG  383 (385)
T ss_dssp             ---------------------CTTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred             ---------------------CCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence                                 14679999983  334444444444443

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.97  E-value=4e-28  Score=227.86  Aligned_cols=255  Identities=18%  Similarity=0.182  Sum_probs=204.4

Q ss_pred             hHHHHHHHHHhhcCCCceEE---eCcHHHHHH-HHHHhcCCCCEEEecC-CCCCcHHHHH-------hhhcccCCcEEEE
Q 016612           56 TRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLL-------SRVTPKTGVVVKR  123 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~---~~~gt~al~-~~~~~~~~g~~Vlv~~-~~~~~~~~~~-------~~~~~~~g~~~~~  123 (386)
                      .++++++.+++++|.+..++   ++||++|+. ++.++++|||+|++++ +.|+++...+       ...++..|++++.
T Consensus        75 g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~  154 (427)
T 3hvy_A           75 GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKM  154 (427)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEE
T ss_pred             hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEE
Confidence            48899999999999998888   899999986 5667899999999998 9998886444       1456678999999


Q ss_pred             eCC----CCHHHHHhhhC--CCceEEEEeC----CCCCCcccccHHHHHHHHHH--cCCEEEEeCCCCCCC-ccCCCCCC
Q 016612          124 VNT----CDLDEVASAIG--PWTKLVWVES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELG  190 (386)
Q Consensus       124 v~~----~d~~~l~~~~~--~~~~~v~~~~----~~nptG~~~~l~~i~~la~~--~~~~li~D~a~~~~~-~~~~~~~~  190 (386)
                      ++.    .|+++++++++  +++++|++++    |+||+|.+.|+++|.++|++  +|+++++|++|+.+. ...+...+
T Consensus       155 v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~g  234 (427)
T 3hvy_A          155 VDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVG  234 (427)
T ss_dssp             CCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGT
T ss_pred             ecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccC
Confidence            998    69999999998  8999999999    99999999999999999999  899999999998887 45667778


Q ss_pred             ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhc--C--CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 016612          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  266 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  266 (386)
                      +|++++|+||+++|+...++|+++++ +++.+.+.......  +  .+.+...++++.+++..+..+.++..+++..+.+
T Consensus       235 aDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~~~~~~~a~~la~  313 (427)
T 3hvy_A          235 ADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKGAVFCAR  313 (427)
T ss_dssp             CSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            99999999999977544568999986 55666665533222  1  1222334677778888888899999999999999


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceec
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  325 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~  325 (386)
                      ++++++.  .+ +++ ++.++          ...++++.+++.+...++++.+......
T Consensus       314 ~L~~~g~--~V-~p~-~~~~~----------~~li~~~~l~~~~~~~~f~~~l~~~~~~  358 (427)
T 3hvy_A          314 IMELAGF--DV-LPK-YNDKR----------TDIIQAIKFNDEKKLIDFIKGIQTASPV  358 (427)
T ss_dssp             HHHHTTC--EE-ESC-TTSCC----------SSSEEEEECSSHHHHHHHHHHHHHTCSS
T ss_pred             HHHhCCC--ee-cCC-CCCCC----------ceEEEEEeCCCHHHHHHHHHHhcccccc
Confidence            9998763  22 444 33322          2338899998888888999988876543

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.97  E-value=1.3e-28  Score=231.72  Aligned_cols=285  Identities=15%  Similarity=0.162  Sum_probs=208.7

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHH
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV  132 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l  132 (386)
                      .+...++++.+++++|.++.+++++|++++. ++..++++||.|+++.|.|+++.    ..++..|.+++.++..|++++
T Consensus        89 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l  164 (401)
T 1fc4_A           89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASII----DGVRLCKAKRYRYANNDMQEL  164 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHH----HHHHTSCSEEEEECTTCHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHH----HHHHHcCCceEEECCCCHHHH
Confidence            3578899999999999988899999998876 56667899999999999998775    345678999999998899999


Q ss_pred             HhhhCC------CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc---------CCCCCCccEEEec
Q 016612          133 ASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHS  197 (386)
Q Consensus       133 ~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~---------~~~~~~~di~~~S  197 (386)
                      ++.+++      ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+...         .....+.|++++|
T Consensus       165 ~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s  244 (401)
T 1fc4_A          165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT  244 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEec
Confidence            988864      7999999999999999999999999999999999999999754431         1112357999999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHhh--hhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCC
Q 016612          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      +||+++++.   +|+++++ +++.+.+....  .......++..++++..+++.+   ....++..++.+.+.+.+++..
T Consensus       245 ~sK~~~~~~---gG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g  320 (401)
T 1fc4_A          245 LGKALGGAS---GGYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG  320 (401)
T ss_dssp             SSSTTCSSS---CEEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhccCCC---CEEEEcC-HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence            999995544   4999886 55655554432  2223455666666655544433   2445556666666777766541


Q ss_pred             CcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHH
Q 016612          273 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  352 (386)
Q Consensus       273 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~  352 (386)
                               ++      ++    ...++++++.+++......+.+.+...|+.+.+|..+.   .|              
T Consensus       321 ---------~~------~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~---~~--------------  364 (401)
T 1fc4_A          321 ---------FT------LA----GADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPV---VP--------------  364 (401)
T ss_dssp             ---------CC------BC----CSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTS---SC--------------
T ss_pred             ---------Cc------cc----CCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCC---CC--------------
Confidence                     11      11    13578888888765556778888877788877665311   00              


Q ss_pred             hcCCCCCeEEEEecc----CChHHHHHHHHHHHhcCC
Q 016612          353 ARGLTEDLVRISVGI----EDVNDLISDLDKALRTGP  385 (386)
Q Consensus       353 ~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~~  385 (386)
                         ..++++||+++.    ++++++++.|++++++..
T Consensus       365 ---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  398 (401)
T 1fc4_A          365 ---KGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             ---TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ---CCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence               124679999973    678888888888877653

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.97  E-value=2.4e-28  Score=227.45  Aligned_cols=288  Identities=14%  Similarity=0.175  Sum_probs=201.4

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|... |.+ +++++.+++.+.+|.    ++.+++++|++++.+ +..++++||+|++++|+|+++.    ..++..|
T Consensus        59 ~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g  134 (370)
T 2z61_A           59 KTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYK----NFIRFLG  134 (370)
T ss_dssp             CCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHH----HHHHHTT
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHcC
Confidence            3456655 554 677788777766552    357777777899874 5557899999999999999886    3455688


Q ss_pred             cEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----CCC----CCC
Q 016612          119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----RPL----ELG  190 (386)
Q Consensus       119 ~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----~~~----~~~  190 (386)
                      .+++.++ .|++++++.+++++++|++++|+||||.+.|.+ |.++|+++|+++|+|++|+.+...    +..    ..+
T Consensus       135 ~~~~~v~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  212 (370)
T 2z61_A          135 AKPVFCD-FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLE  212 (370)
T ss_dssp             CEEEEEC-SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCS
T ss_pred             CEEEEeC-CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCC
Confidence            9999998 799999999988899999999999999999999 999999999999999999864431    111    236


Q ss_pred             ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-H----HHHHHHHHHHHHHHH
Q 016612          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-M----ALRVEKQQDNAQKIA  265 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~l~  265 (386)
                      .|++++|+||++ |++|+|+|++++++ ++.+.+...........+...+.++...++. .    ....+...++.+.+.
T Consensus       213 ~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  290 (370)
T 2z61_A          213 KTILINGFSKLY-AMTGWRIGYVISND-EIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVL  290 (370)
T ss_dssp             SEEEEEESTTTT-TCGGGCCEEEECCH-HHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecChhcc-CCccceEEEEEECH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            799999999999 55678999999875 5666666555544456677777777676664 1    222333444555555


Q ss_pred             HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC-cceeccCCCCccccccccccccCC
Q 016612          266 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHA  344 (386)
Q Consensus       266 ~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~  344 (386)
                      +.+++..         +.      +.  . ...+.++++.++.  ....+.+.+. .+|+.+.+|..+..          
T Consensus       291 ~~L~~~g---------~~------~~--~-~~~~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~----------  340 (370)
T 2z61_A          291 KYVKDFG---------WE------VN--N-PIGAYYVFPNIGE--DGREFAYKLLKEKFVALTPGIGFGS----------  340 (370)
T ss_dssp             HHHHHTT---------CB------CC--C-CCBTTEECCBCSS--CHHHHHHHHHHHHCEECEEGGGGCG----------
T ss_pred             HHHHHcC---------Ce------ec--C-CCcceEEEEecCC--CHHHHHHHHHHhCCEEEeCchhhCC----------
Confidence            5555431         11      11  0 1123445556654  3556777765 57888777654210          


Q ss_pred             CCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          345 SIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       345 ~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                                 ..++++|||++.  +++++.++.|+++++
T Consensus       341 -----------~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          341 -----------KGKNYIRISYANSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             -----------GGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             -----------CCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence                       025679999973  556666777776664

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.97  E-value=5.8e-28  Score=226.11  Aligned_cols=255  Identities=20%  Similarity=0.205  Sum_probs=203.2

Q ss_pred             hHHHHHHHHHhhcCCCceEE---eCcHHHHHH-HHHHhcCCCCEEEecC-CCCCcHHHHHh------hhcccCCcEEEEe
Q 016612           56 TRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLLS------RVTPKTGVVVKRV  124 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~---~~~gt~al~-~~~~~~~~g~~Vlv~~-~~~~~~~~~~~------~~~~~~g~~~~~v  124 (386)
                      .++++++.+++++|.+..++   ++||++|+. ++.++++|||+|++++ +.|.++...+.      ..++..|++++.+
T Consensus        60 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v  139 (409)
T 3jzl_A           60 GRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSV  139 (409)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEEC
T ss_pred             HHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEe
Confidence            58899999999999998888   889999987 5667899999999998 99998865442      4566789999999


Q ss_pred             CC-----CCHHHHHhhhCCCceEEEEeC----CCCCCcccccHHHHHHHHHH--cCCEEEEeCCCCCCC-ccCCCCCCcc
Q 016612          125 NT-----CDLDEVASAIGPWTKLVWVES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELGAD  192 (386)
Q Consensus       125 ~~-----~d~~~l~~~~~~~~~~v~~~~----~~nptG~~~~l~~i~~la~~--~~~~li~D~a~~~~~-~~~~~~~~~d  192 (386)
                      +.     .|++++++++++++++|++++    |+||+|.+.|+++|.++|++  +|+++++|++|+.+. ...+...++|
T Consensus       140 ~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~D  219 (409)
T 3jzl_A          140 PLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGAD  219 (409)
T ss_dssp             CCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCS
T ss_pred             CCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCe
Confidence            98     599999999999999999999    99999999999999999999  999999999998876 3456677899


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhc----CCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Q 016612          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE----GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       193 i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  268 (386)
                      ++++|+||+++|+...++|+++++ +++.+.+.......    ..+......+++.++++.+..+.++..+++..+.++|
T Consensus       220 iv~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~~~r~~~~~~~a~~la~~L  298 (409)
T 3jzl_A          220 IIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARFTAAML  298 (409)
T ss_dssp             EEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhccccccccccccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999977654568999987 55666555433221    1222222345567778788889999999999999999


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceec
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  325 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~  325 (386)
                      ++++.  .+ +++ ++.++          ...++++.+++.+...++++.++.....
T Consensus       299 ~~~g~--~v-~p~-~~~~~----------~~~i~~i~l~~~~~~~~~~~~L~~~~~~  341 (409)
T 3jzl_A          299 AEFGV--EA-DPV-WDAPR----------TDLIQSVSFHNKEKMVAFAQAIQAASPV  341 (409)
T ss_dssp             HHTTC--EE-ESC-TTSCC----------SSSCCEEECSCHHHHHHHHHHHHHTSSS
T ss_pred             HhCCC--cc-cCC-CCCCC----------ccEEEEEEeCCHHHHHHHHHHHHhcCcc
Confidence            98763  22 444 33322          2237888898888888999998877643

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.96  E-value=8.1e-29  Score=230.16  Aligned_cols=311  Identities=14%  Similarity=0.195  Sum_probs=214.2

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAA-VT   87 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~   87 (386)
                      ..+++++.+...++ .++.+.++.....     .....|....   ..++++.+++++|.+  +.+++++|++++.+ +.
T Consensus        30 ~~~i~l~~~~~~~~-~~~~v~~a~~~~~-----~~~~~y~~~~---~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~  100 (365)
T 3get_A           30 KEVIKLASNENPFG-TPPKAIECLRQNA-----NKAHLYPDDS---MIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIH  100 (365)
T ss_dssp             SCCEECSSCCCTTC-SCHHHHHHHHHHG-----GGTTSCCCTT---CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             CceEEecCCCCCCC-CCHHHHHHHHHHH-----HhhccCCCCC---hHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            35678885545555 3333333211111     1233444331   257888888888865  56677777899874 55


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-----CCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~  162 (386)
                      .++++||+|++++|+|+++.    ..++..|.+++.++.     .|++++++.+++++++|++++|+||||.+.|.+++.
T Consensus       101 ~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~  176 (365)
T 3get_A          101 SKLNSKNAFLQAGVTFAMYE----IYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEAT  176 (365)
T ss_dssp             HHCCTTCEEEECSSCCTHHH----HHHHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HHhCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHH
Confidence            57899999999999999885    445567899999987     478899999999999999999999999999988888


Q ss_pred             HHHH--HcCCEEEEeCCCCCCCc-------cCC----CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh
Q 016612          163 EMAH--AHGALLLVDNSIMSPVL-------SRP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (386)
Q Consensus       163 ~la~--~~~~~li~D~a~~~~~~-------~~~----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~  229 (386)
                      ++++  ++|+++|+|++|+...+       ...    ...+.+++++|+||++ |.+|+|+|+++++ +++.+.+.....
T Consensus       177 ~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~~~~~~~  254 (365)
T 3get_A          177 EFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLY-GLGGLRIGYGIAN-ANIISAFYKLRA  254 (365)
T ss_dssp             HHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTT-SCTTTCCEEEEEC-HHHHHHHHHHSC
T ss_pred             HHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHh-cCcchheEEEEcC-HHHHHHHHHhcC
Confidence            8887  67999999999873221       111    1236789999999999 5567899999995 566665655443


Q ss_pred             hcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe
Q 016612          230 AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  306 (386)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~  306 (386)
                      .  .+.+...+.++...++.   +....++..++.+.+.+.+++..         +.      ++    ...+.++++.+
T Consensus       255 ~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g---------~~------~~----~~~~~~~~~~~  313 (365)
T 3get_A          255 P--FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKHN---------IK------II----DSYTNFITYFF  313 (365)
T ss_dssp             T--TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT---------CE------EC----CCSSSEEEEEC
T ss_pred             C--CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC---------CE------EC----CCCCeEEEEEC
Confidence            3  34566666665555543   34444555566666666666541         11      10    22456788888


Q ss_pred             CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 016612          307 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  382 (386)
Q Consensus       307 ~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  382 (386)
                      +.. ....+.+.+...|+.+++|..+                      +  ++++|+|++. ++++++++.|+++++
T Consensus       314 ~~~-~~~~~~~~l~~~gi~v~~g~~~----------------------~--~~~iRis~~~~~~i~~l~~~l~~~l~  365 (365)
T 3get_A          314 DEK-NSTDLSEKLLKKGIIIRNLKSY----------------------G--LNAIRITIGTSYENEKFFTEFDKILR  365 (365)
T ss_dssp             SSS-CHHHHHHHHHTTTEECEECGGG----------------------T--CSEEEEECCCHHHHHHHHHHHHHHHC
T ss_pred             CCC-CHHHHHHHHHHCCEEEEECccC----------------------C--CCEEEEEcCCHHHHHHHHHHHHHHhC
Confidence            653 4667777777788888776641                      1  4679999974 778888888887763

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.96  E-value=1.3e-28  Score=230.85  Aligned_cols=291  Identities=13%  Similarity=0.169  Sum_probs=201.0

Q ss_pred             CccccCCCCchHHHHHHHHHhhcC--C--CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           46 PYDYTRSGNPTRDALESLLAKLDK--A--DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~g--~--~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      .+.|+....++++++++++++.+|  .  ++.+++++|++++. ++..++++||+|+++.|+|+++.    ..++..|.+
T Consensus        62 ~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~  137 (391)
T 4dq6_A           62 IYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFN----SVVKNNNRE  137 (391)
T ss_dssp             CCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHH----HHHHHTTCE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHH----HHHHHcCCe
Confidence            445555333589999999999988  3  35677777789987 55667899999999999999886    445578899


Q ss_pred             EEEeCCC---------CHHHHHhhhCCCceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          121 VKRVNTC---------DLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       121 ~~~v~~~---------d~~~l~~~~~~~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      ++.++.+         |++++++++++ +++|++++|+||||.+.   ++++|.++|+++|+++|+|++|+.....    
T Consensus       138 ~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~  216 (391)
T 4dq6_A          138 LIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKH  216 (391)
T ss_dssp             EEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC
T ss_pred             EEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCc
Confidence            9988765         89999999988 99999999999999995   5889999999999999999999753321    


Q ss_pred             -CCCCC-----CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcC-CCCChhhHHHHHhcCCc----HHHH
Q 016612          185 -RPLEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRGVKT----MALR  253 (386)
Q Consensus       185 -~~~~~-----~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~  253 (386)
                       .....     +.++++.|+||++ |.+|+|+|+++++++++.+.+.......+ ...+...+.++...+..    +...
T Consensus       217 ~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  295 (391)
T 4dq6_A          217 IPMASISKEFEKNTITCMAPTKTF-NIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESF  295 (391)
T ss_dssp             CCGGGSCHHHHHTEEEEECSHHHH-TCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cCHHHcCccccCcEEEEEechhhc-cCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHH
Confidence             11122     3449999999999 55578999999987567666655543332 24455554444333322    3344


Q ss_pred             HHHHHHHHHHHHHHHhh-CCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCC-HHhHHHHHhhcCcc-eeccCCC
Q 016612          254 VEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGS-LALSKHVVETTKYF-SITVSFG  329 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~l~~~-gi~~~~G  329 (386)
                      .+...++.+.+.+.+++ .+.        +      .++    ...++ ++++.++. ......+.+.+... |+.+++|
T Consensus       296 ~~~~~~~~~~l~~~l~~~~~~--------~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g  357 (391)
T 4dq6_A          296 LEYLESNIDFAIKYINENMPK--------L------KVR----KPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQG  357 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT--------S------EEC----CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEG
T ss_pred             HHHHHHHHHHHHHHHHhhCCC--------C------Eec----CCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCc
Confidence            44555666666666665 221        1      111    11233 34466643 22466777777766 8888776


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHH
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKAL  381 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l  381 (386)
                      ..+.                     ...++++|+|++.  +++++.++.|++++
T Consensus       358 ~~~~---------------------~~~~~~iRis~~~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          358 NSFG---------------------IGGSGYQRINLACPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             GGGC---------------------TTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             hhhC---------------------CCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            6422                     1135789999974  56677777777665

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.96  E-value=1.3e-28  Score=229.66  Aligned_cols=291  Identities=16%  Similarity=0.167  Sum_probs=202.5

Q ss_pred             CCccccCC-CCchHHHHHHHHHhhcC---CCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           45 GPYDYTRS-GNPTRDALESLLAKLDK---ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        45 ~~~~y~~~-g~~~~~~l~~~l~~~~g---~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ....|... |.   .++++.++++++   .++.+++++|++|+. ++.+++++||+|+++.|.|+++.    ..++..|.
T Consensus        55 ~~~~y~~~~g~---~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~  127 (375)
T 3op7_A           55 TKLNYGWIEGS---PAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLY----DIPKSLGA  127 (375)
T ss_dssp             SCCSSCCTTCC---HHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHH----HHHHHTTC
T ss_pred             CCcCCCCCCCh---HHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHcCC
Confidence            34456554 43   467777777753   246777777789987 55668899999999999999886    44557788


Q ss_pred             EEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccCC---
Q 016612          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP---  186 (386)
Q Consensus       120 ~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~~---  186 (386)
                      +++.++.+       |++++++++++++++|++++|+||||.+.|   +++|.++|++||+++|+|++|+.......   
T Consensus       128 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~  207 (375)
T 3op7_A          128 EVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSI  207 (375)
T ss_dssp             EEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCH
T ss_pred             EEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCch
Confidence            88888753       899999999999999999999999999999   99999999999999999999876433210   


Q ss_pred             -CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHH----HHHHHHHH
Q 016612          187 -LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR----VEKQQDNA  261 (386)
Q Consensus       187 -~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  261 (386)
                       ...+.++++.|+||++ +.+|+|+|++++ ++++.+.+...........+...++++...++.....    .+...++.
T Consensus       208 ~~~~~~~i~~~s~sK~~-~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  285 (375)
T 3op7_A          208 IEVYDKGIAVNSLSKTY-SLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENL  285 (375)
T ss_dssp             HHHCTTEEEEEESSSSS-SCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCEEEEeEChhhc-CCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence             1135679999999999 445789999998 4667776665555545555666666555544433322    33335566


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhc-CcceeccCCCCcccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      +.+.+.+++.+.+              .+.  . ...+.+.++.++.......+.+.+ ...|+.+.+|..+.       
T Consensus       286 ~~l~~~l~~~~~~--------------~~~--~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-------  341 (375)
T 3op7_A          286 AILDQWIEEEPLV--------------SYI--R-PAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFE-------  341 (375)
T ss_dssp             HHHHHHHHHCTTE--------------EEC--C-CSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGT-------
T ss_pred             HHHHHHHhhCCCc--------------eEe--c-CCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhC-------
Confidence            6666666654321              110  0 112334455554333355566655 56788777665421       


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                                      .++++|++++.  +++++.++.|.+++++.
T Consensus       342 ----------------~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~  371 (375)
T 3op7_A          342 ----------------RDGYVRLGFACEQETLIKGLEKLSQFLRRF  371 (375)
T ss_dssp             ----------------CTTEEEECCCSCHHHHHHHHHHHHHHHGGG
T ss_pred             ----------------CCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence                            15679999974  57888899999888764

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.96  E-value=4.2e-28  Score=227.37  Aligned_cols=288  Identities=18%  Similarity=0.206  Sum_probs=200.6

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ..|... |.+ +++++.+++.+.+|.    ++.+++++|++++.+ +..++++||+|++++|+|+++.    ..++..|.
T Consensus        72 ~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~  147 (389)
T 1o4s_A           72 VKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYI----PQIILAGG  147 (389)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCC
Confidence            456655 554 677777777766664    256666667799874 5557899999999999999986    34456788


Q ss_pred             EEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----C
Q 016612          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R  185 (386)
Q Consensus       120 ~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~  185 (386)
                      +++.++.+       |++++++.+++++++|++++|+||||.+.|   +++|.++|+++|+++|+|++|+.+...    +
T Consensus       148 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~  227 (389)
T 1o4s_A          148 TVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTS  227 (389)
T ss_dssp             EEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCC
T ss_pred             EEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence            88888753       789999999889999999999999999987   999999999999999999999865432    1


Q ss_pred             CC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-HHHHHHHHHHH
Q 016612          186 PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-MALRVEKQQDN  260 (386)
Q Consensus       186 ~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  260 (386)
                      ..    ..+.|++++|+||++ |++|+|+|+++++ +++.+.+.........+.+...+.++...++. +....+...++
T Consensus       228 ~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  305 (389)
T 1o4s_A          228 ILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISS-EKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKER  305 (389)
T ss_dssp             HHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HhhcCCCCCcEEEEeechhhc-CCcccceEEEEeC-HHHHHHHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            11    136799999999999 5567899999986 45666565555444445566666555555443 34445566667


Q ss_pred             HHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC-cceeccCCCCccccccccc
Q 016612          261 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       261 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~  339 (386)
                      .+.+.+.+++..         +.-.+        +. .+.++++.++  ....++.+.+. ..|+.+.+|..+.      
T Consensus       306 ~~~l~~~L~~~g---------~~~~~--------~~-~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~------  359 (389)
T 1o4s_A          306 KNFVVERLKKMG---------VKFVE--------PE-GAFYLFFKVR--GDDVKFCERLLEEKKVALVPGSAFL------  359 (389)
T ss_dssp             HHHHHHHHHHTT---------CCCCC--------CS-BSSEEEEECS--SCHHHHHHHHHHHHCEECEEGGGGT------
T ss_pred             HHHHHHHHHhcC---------Ceeec--------CC-cceEEEEeCC--CCHHHHHHHHHHHCCEEEeCchhcC------
Confidence            777777776531         11110        11 2345566664  22456666664 6788777665321      


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                                       .++++|+|++.  +++++.++.|.+++++
T Consensus       360 -----------------~~~~~Ris~~~~~~~l~~~l~~l~~~l~~  388 (389)
T 1o4s_A          360 -----------------KPGFVRLSFATSIERLTEALDRIEDFLNS  388 (389)
T ss_dssp             -----------------CTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred             -----------------CCCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence                             13579999974  5666777777776653

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.96  E-value=7.9e-28  Score=228.14  Aligned_cols=297  Identities=19%  Similarity=0.220  Sum_probs=199.2

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCCC----------ceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhh
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKAD----------RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR  112 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~----------~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~  112 (386)
                      ..|++. |.+ +++++.+++++.+|.+          +.|++++| ++++. ++..++++||+|++++|+|+++.    .
T Consensus        72 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~  147 (425)
T 2r2n_A           72 LQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTL----Q  147 (425)
T ss_dssp             TSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHH----H
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----H
Confidence            468777 886 8999999998887753          25555555 68987 45567899999999999998885    4


Q ss_pred             hcccCCcEEEEeCCC----CHHHHHhhhC------------CCceEEEE-eCCCCCCccccc---HHHHHHHHHHcCCEE
Q 016612          113 VTPKTGVVVKRVNTC----DLDEVASAIG------------PWTKLVWV-ESPTNPRQQICD---IRKIAEMAHAHGALL  172 (386)
Q Consensus       113 ~~~~~g~~~~~v~~~----d~~~l~~~~~------------~~~~~v~~-~~~~nptG~~~~---l~~i~~la~~~~~~l  172 (386)
                      .++..|.+++.++.+    |++++++.++            +++++|++ ++|+||||.+.+   +++|.++|+++|++|
T Consensus       148 ~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l  227 (425)
T 2r2n_A          148 SLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI  227 (425)
T ss_dssp             HHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            556788999888863    7899998886            46888876 699999999997   459999999999999


Q ss_pred             EEeCCCCCCCc-----cCCC---CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH
Q 016612          173 LVDNSIMSPVL-----SRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (386)
Q Consensus       173 i~D~a~~~~~~-----~~~~---~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (386)
                      |+||+|+...+     .+..   ..+.++++.|+||++ + +|+|+||+++++ .+.+.+...........+...+.++.
T Consensus       228 i~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~-~-~GlRiG~~~~~~-~l~~~l~~~~~~~~~~~~~~~q~a~~  304 (425)
T 2r2n_A          228 IEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII-S-SGLRIGFLTGPK-PLIERVILHIQVSTLHPSTFNQLMIS  304 (425)
T ss_dssp             EEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT-C-STTCCEEEEEEH-HHHHHHHHHHHTTTCSSCHHHHHHHH
T ss_pred             EEECCcccccCCCCCCCCccccCCCCCEEEEccchhhc-c-CccceEEEecCH-HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            99999863211     1111   235679999999999 5 689999999974 56666655555444556666666655


Q ss_pred             hcCCcH---------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHH-
Q 016612          245 RGVKTM---------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH-  314 (386)
Q Consensus       245 ~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-  314 (386)
                      ..++..         ....+.+.++.+.+.+.+++.-       +++.     .+.  . +..+.++++.++....... 
T Consensus       305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-------~~~~-----~~~--~-p~~g~~~~~~~~~~~~~~~~  369 (425)
T 2r2n_A          305 QLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL-------TGLA-----EWH--V-PAAGMFLWIKVKGINDVKEL  369 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------SSSE-----EEC--C-CSBSSEEEEEETTCSCCHHH
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCe-----EEe--C-CCceEEEEEEeCCCCCHHHH
Confidence            544321         1122333344444445554420       1110     000  1 1235677788754222223 


Q ss_pred             HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhc
Q 016612          315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRT  383 (386)
Q Consensus       315 l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~  383 (386)
                      +.+.+...|+.+.+|..+..   +.               ...++++|||++   .+++++.++.|++++++
T Consensus       370 ~~~~l~~~gv~v~pg~~f~~---~~---------------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          370 IEEKAVKMGVLMLPGNAFYV---DS---------------SAPSPYLRASFSSASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             HHTHHHHTTEECEEGGGGSS---ST---------------TSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcEEechhhhcC---CC---------------CCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            45666677888877765220   00               012578999986   37788888888888764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.96  E-value=9.6e-28  Score=221.94  Aligned_cols=277  Identities=13%  Similarity=0.155  Sum_probs=203.3

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      +...++++.+++++|.+  +.+++++|++++.+ +..++++||+|++++|.|+++.    ..++..|.+++.++.+    
T Consensus        51 ~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~  126 (354)
T 3ly1_A           51 NEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGE----HFAKIAGMKVTKVKMLDNWA  126 (354)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECCCTTSC
T ss_pred             CchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHH----HHHHHcCCEEEEecCCCCCC
Confidence            46789999999999865  56666666799875 4557799999999999999885    4556789999999876    


Q ss_pred             -CHHHHHhhhC--CCceEEEEeCCCCCCcccccHHHHHHHHHH--cCCEEEEeCCCCCCCcc----CC----CCC-CccE
Q 016612          128 -DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS----RP----LEL-GADI  193 (386)
Q Consensus       128 -d~~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~~~~li~D~a~~~~~~~----~~----~~~-~~di  193 (386)
                       |++++++.++  +++++|++++|+||||.+.|.+++.++++.  +|+++|+|++|+.....    ..    ... +.++
T Consensus       127 ~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i  206 (354)
T 3ly1_A          127 FDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENII  206 (354)
T ss_dssp             CCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEE
T ss_pred             CCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEE
Confidence             8999999998  799999999999999999998888888877  99999999998743322    11    122 6679


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhh
Q 016612          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       194 ~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~  270 (386)
                      +++|+||++ |.+|+|+|+++++ +.+.+.+......  ...+...+.++...++.   +..+.++..++.+.+.+.+++
T Consensus       207 ~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  282 (354)
T 3ly1_A          207 LLKTFSKIH-AMAGMRVGYAVAH-PTVIALMGRYVAG--EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALED  282 (354)
T ss_dssp             EEEESSSTT-CCGGGCCEEEECC-HHHHHHHGGGTTC--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeChhhc-cChhhhheeeecC-HHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999 5567899999985 5566655544433  45666666666666654   333444555566666666654


Q ss_pred             CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHH
Q 016612          271 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  350 (386)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~  350 (386)
                      ..         +...          +..+.++++.++.  ...++.+.+..+|+.++ |....                 
T Consensus       283 ~~---------~~~~----------~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~-g~~~~-----------------  323 (354)
T 3ly1_A          283 LK---------LPYL----------PSEGNFVFHQLVV--PLKDYQTHMADAGVLIG-RAFPP-----------------  323 (354)
T ss_dssp             HT---------CCBC----------CCCSSEEEEECSS--CHHHHHHHHHHTTEECC-CCCTT-----------------
T ss_pred             CC---------CeEC----------CCCceEEEEECCC--CHHHHHHHHHHCCEEEe-ecCCC-----------------
Confidence            31         1111          2246778888864  35567777777788776 54310                 


Q ss_pred             HHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhcC
Q 016612          351 RQARGLTEDLVRISVGI-EDVNDLISDLDKALRTG  384 (386)
Q Consensus       351 ~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~~  384 (386)
                            .++++|||++. ++++++++.|++++++.
T Consensus       324 ------~~~~iRis~~~~~~i~~~~~~l~~~l~~~  352 (354)
T 3ly1_A          324 ------ADNWCRISLGTPQEMQWVADTMREFRKKS  352 (354)
T ss_dssp             ------CTTEEEEECCCHHHHHHHHHHHHHHHHTT
T ss_pred             ------CCCEEEEEcCCHHHHHHHHHHHHHHHHhh
Confidence                  36779999974 78899999999988764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.96  E-value=7.6e-29  Score=232.36  Aligned_cols=294  Identities=16%  Similarity=0.174  Sum_probs=202.2

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----Cc-eEEeCcHHHHHHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----DR-ALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~-~i~~~~gt~al~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ..|... |.+ +++++.+++.+.+|.    ++ .+++++|++++.++ ..++++||+|++++|+|+++..    .++..|
T Consensus        57 ~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g  132 (389)
T 1gd9_A           57 THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP----AVILAG  132 (389)
T ss_dssp             CSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH----HHHHHT
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHCC
Confidence            456665 554 778888888776673    35 66777778999754 4467899999999999999864    445678


Q ss_pred             cEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       119 ~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+++.++.+       |++++++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.+...    
T Consensus       133 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~  212 (389)
T 1gd9_A          133 GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARH  212 (389)
T ss_dssp             CEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC
T ss_pred             CEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCC
Confidence            888887742       789999999888999999999999999984   899999999999999999999865431    


Q ss_pred             -CCCC----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH------HH
Q 016612          185 -RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA------LR  253 (386)
Q Consensus       185 -~~~~----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  253 (386)
                       ....    .+.|+++.|+||++ |++|+|+|+++++ +.+.+.+...........+...+.++...++...      ..
T Consensus       213 ~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  290 (389)
T 1gd9_A          213 YSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAP-SWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEM  290 (389)
T ss_dssp             CCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHhhccCCCCCEEEEecChhhc-CCcccceEEEEEC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHH
Confidence             1111    35789999999998 5567899999987 5566666555544444556666666555555422      22


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcC-cceeccCCCCc
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTK-YFSITVSFGSV  331 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~-~~gi~~~~G~~  331 (386)
                      .+...++.+.+.+.+++..         +.-.+         ...+.++++.++. .....++.+.+. ..|+.+.+|..
T Consensus       291 ~~~~~~~~~~l~~~L~~~g---------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~  352 (389)
T 1gd9_A          291 RKEYDRRRKLVWKRLNEMG---------LPTVK---------PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSA  352 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---------CCCCC---------CCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHcC---------CeecC---------CCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchh
Confidence            3334455555555555431         11110         1113345555542 123556777765 67888777654


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcCC
Q 016612          332 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTGP  385 (386)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~~  385 (386)
                      +..                     ..++++|||++.  +++++.++.|.+++++..
T Consensus       353 ~~~---------------------~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~~~  387 (389)
T 1gd9_A          353 FGK---------------------AGEGYVRISYATAYEKLEEAMDRMERVLKERK  387 (389)
T ss_dssp             GCG---------------------GGTTBEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             hCC---------------------CCCCeEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence            210                     025679999974  677788888888887653

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.96  E-value=5.1e-28  Score=228.51  Aligned_cols=293  Identities=14%  Similarity=0.116  Sum_probs=197.2

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC-----CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA-----DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~-----~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|... |.+ +++++.+++.+.+|.     ++.+++++|++++.+ +..++++||+|++++|+|+++..    .++..
T Consensus        68 ~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~----~~~~~  143 (412)
T 2x5d_A           68 THGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIY----GAVIA  143 (412)
T ss_dssp             -----CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH----HHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHc
Confidence            3457654 554 677777777766674     356777777899874 55578999999999999998864    34467


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      |.+++.++.+       |++++++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.+.+.   
T Consensus       144 g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~  223 (412)
T 2x5d_A          144 GAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWK  223 (412)
T ss_dssp             TCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred             CCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Confidence            8888888753       468888888888999999999999999986   688999999999999999999864421   


Q ss_pred             --CCCC----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHH
Q 016612          185 --RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRV  254 (386)
Q Consensus       185 --~~~~----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  254 (386)
                        +...    .+.++++.|+||++ |++|+|+|+++++ +.+.+.+.........+.+...+.++...++.    +....
T Consensus       224 ~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  301 (412)
T 2x5d_A          224 APSIMQVPGAKDIAVEFFTLSKSY-NMAGWRIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA  301 (412)
T ss_dssp             CCCGGGSTTGGGTEEEEEECC-CC-SCTTSCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHH
T ss_pred             CCChhhccCccCcEEEEecCcccc-CCcccceEEEEcC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHH
Confidence              1111    36789999999999 5567899999986 55666665554443445556555554443322    33444


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC-CceEEEEeCCHH---hHHHHHhhcC-cceeccCCC
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLA---LSKHVVETTK-YFSITVSFG  329 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~~~---~~~~l~~~l~-~~gi~~~~G  329 (386)
                      +.+.++.+.+.+.|++..         +...          ... +.++++.++...   ....+.+.+. ..|+.+.+|
T Consensus       302 ~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g  362 (412)
T 2x5d_A          302 RQYQQRRDVLVKGLREAG---------WMVE----------NPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPG  362 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHT---------CCCC----------CCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEG
T ss_pred             HHHHHHHHHHHHHHHHCC---------CEec----------CCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCc
Confidence            455566666666666431         1111          112 346777775321   3556777764 458887776


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      ..+..                     ..++++|||++.  +++++.++.|.+++++.
T Consensus       363 ~~f~~---------------------~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~  398 (412)
T 2x5d_A          363 IGFGD---------------------YGDDHVRFALIENRDRLRQAVRGIKAMFRAD  398 (412)
T ss_dssp             GGGCG---------------------GGTTEEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhCC---------------------CCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            54210                     025679999974  66777788888887654

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.96  E-value=1.8e-28  Score=231.42  Aligned_cols=324  Identities=16%  Similarity=0.129  Sum_probs=219.1

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CC-chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~   87 (386)
                      ...++++ +|+++|..++|..........+........|... |. +.++++++++++++|.+..+++++|++++. ++.
T Consensus        59 ~~~ld~~-s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~  137 (409)
T 3kki_A           59 PDDIILQ-SNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQ  137 (409)
T ss_dssp             TTSEECC-CSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred             CceEEee-ccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence            4577888 7888887555433211111100000112222222 44 467889999999999998999999998876 667


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAH  166 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~  166 (386)
                      +++++||.|++++|.|+++..    .++..|.+++.++..|++++++.+++ ++++|++++++||||.+.|+++|.++|+
T Consensus       138 ~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~  213 (409)
T 3kki_A          138 TICQPNTNVYIDFFAHMSLWE----GARYANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISK  213 (409)
T ss_dssp             HHCCTTCEEEEETTSCHHHHH----HHHHTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             HhcCCCCEEEECCCcCHHHHH----HHHHcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHH
Confidence            789999999999999988863    34567889999998899999999874 5899999999999999999999999999


Q ss_pred             HcCCEEEEeCCCCCCCccC---------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh--hhhcCCCC
Q 016612          167 AHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGL  235 (386)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~--~~~~~~~~  235 (386)
                      ++|++||+||+|+.+.+..         ....+.|+++.|+||+++++    +|+++++++ +.+.+...  ....+...
T Consensus       214 ~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~~-~~~~~~~~~~~~~~~~~~  288 (409)
T 3kki_A          214 EFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNNE-VNRCVPFISYPAIFSSTL  288 (409)
T ss_dssp             HHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESSS-GGGTHHHHCHHHHHSBCC
T ss_pred             HcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECHH-HHHHHHHhCcCccccCCC
Confidence            9999999999997654321         11225789999999999643    489988754 43333221  11223334


Q ss_pred             ChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhH
Q 016612          236 APFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  312 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  312 (386)
                      ++...+++..+++..   ....+...++.+.+.+.|++..         +.      +     .+.+.++++.++.....
T Consensus       289 ~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~------~-----~~~~~~~~~~~~~~~~~  348 (409)
T 3kki_A          289 LPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG---------LT------I-----RSESQIIGLETGDERNT  348 (409)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT---------CC------C-----CCSSSEEEEEEESHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------Cc------c-----CCCCCEEEEEeCCHHHH
Confidence            555544444443322   2333445556666666666431         11      1     12567888888766556


Q ss_pred             HHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          313 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       313 ~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                      .++.+.+...|+.+.++..      |..              ..+++++|++++.    ++++++++.|+++++..
T Consensus       349 ~~~~~~L~~~Gv~v~~~~~------~~~--------------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  404 (409)
T 3kki_A          349 EKVRDYLESNGVFGSVFCR------PAT--------------SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG  404 (409)
T ss_dssp             HHHHHHHHHTTEECEEECT------TSS--------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCceEeeeCC------CCc--------------CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence            6777777777876544221      100              1135789999963    77788888888887764

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.96  E-value=5.9e-28  Score=226.22  Aligned_cols=292  Identities=17%  Similarity=0.202  Sum_probs=199.2

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|... |.+ +++++.+++.+.+|.    ++.+++++|++++.+ +.+++++||+|++++|+|+++.    ..++..|
T Consensus        60 ~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g  135 (388)
T 1j32_A           60 KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYP----EMVKLAE  135 (388)
T ss_dssp             CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHH----HHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHH----HHHHHcC
Confidence            3457665 655 788888888877664    245556666799874 5557899999999999999886    4455678


Q ss_pred             cEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       119 ~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+++.++.+       |++++++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+.    
T Consensus       136 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~  215 (388)
T 1j32_A          136 GTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH  215 (388)
T ss_dssp             CEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred             CEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence            888888763       789999999889999999999999999975   899999999999999999998754321    


Q ss_pred             -CCCC-----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC----cHHHHH
Q 016612          185 -RPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRV  254 (386)
Q Consensus       185 -~~~~-----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  254 (386)
                       ....     .+.|+++.|+||++ |++|+|+|+++++ +.+.+.+.........+.+...+.++...++    .+....
T Consensus       216 ~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  293 (388)
T 1j32_A          216 LSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGP-VPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEML  293 (388)
T ss_dssp             CCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHH
T ss_pred             CCHHHccccccCCEEEEeechhcc-CCcccceEEEEeC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence             1111     35789999999999 5668899999986 4566666555554445556655544433332    233444


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCc-ceeccCCCCcc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKY-FSITVSFGSVK  332 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-~gi~~~~G~~~  332 (386)
                      +...++.+.+.+.|++.+.        +.      +.  . ...+.++++.++. .....++.+.+.. .|+.+.+|..+
T Consensus       294 ~~~~~~~~~l~~~L~~~~g--------~~------~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~  356 (388)
T 1j32_A          294 AAFAERRRYMLDALNAMPG--------LE------CP--K-PDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAF  356 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCTT--------CB------CC--C-CCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHhhCCC--------Cc------cc--C-CCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhh
Confidence            5556666666666665421        11      11  0 0112333344432 1134566666654 58877766532


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      .                       .++++|+|++.  +++++.++.|++++++
T Consensus       357 ~-----------------------~~~~iRis~~~~~~~i~~~~~~l~~~l~~  386 (388)
T 1j32_A          357 G-----------------------ADDCIRLSYATDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             T-----------------------CTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             C-----------------------CCCcEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            1                       14569999973  6677778888777764

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.96  E-value=3.5e-28  Score=226.07  Aligned_cols=277  Identities=16%  Similarity=0.201  Sum_probs=197.8

Q ss_pred             chHHHHHHHHHhhcCC-C--ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKA-D--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~-~--~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +...++++.+++++|. +  +.+++++|++++.+ +..++++||+|++++|+|+++.    ..++..|.+++.++.+   
T Consensus        67 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~  142 (367)
T 3euc_A           67 PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYA----MSAQFAGLEFVGVPLRADF  142 (367)
T ss_dssp             CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSC----HHHHTTTCEEEEEECCTTS
T ss_pred             CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEecCCCCC
Confidence            3567889999999987 3  45555556699875 4557899999999999999885    4456789999988854   


Q ss_pred             --CHHHHHhhhCC-CceEEEEeCCCCCCccccc---HHHHHHHHHHc--CCEEEEeCCCCCCCc----cCCCCCCccEEE
Q 016612          128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICD---IRKIAEMAHAH--GALLLVDNSIMSPVL----SRPLELGADIVM  195 (386)
Q Consensus       128 --d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~---l~~i~~la~~~--~~~li~D~a~~~~~~----~~~~~~~~di~~  195 (386)
                        |++++++++++ ++++|++++|+||||.+.+   +++|.++|++|  |+++|+|++|+....    ......+.++++
T Consensus       143 ~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~  222 (367)
T 3euc_A          143 TLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVM  222 (367)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEE
T ss_pred             CCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEE
Confidence              89999999987 8999999999999999974   77888889999  999999999874321    112234567999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCC
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      .|+||+  +.+|+|+|+++++ +++.+.+.....  ..+.+...+.++...++.   +..+.++..++.+.+.+.+++.+
T Consensus       223 ~s~sK~--~~~G~r~G~~~~~-~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~  297 (367)
T 3euc_A          223 RTVSKL--GLAGIRLGYVAGD-PQWLEQLDKVRP--PYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHG  297 (367)
T ss_dssp             EECCCT--TSCSCCEEEEEEC-HHHHHHHGGGCC--SSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             ecchhh--cccccCceeeeeC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999  4567899999986 556555544332  234566666666555554   23344455555666666665543


Q ss_pred             CcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHH
Q 016612          273 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  352 (386)
Q Consensus       273 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~  352 (386)
                      .+              .++    +..+.++++.++   ...++.+.+...|+.+++|..+.                   
T Consensus       298 g~--------------~~~----~~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~-------------------  337 (367)
T 3euc_A          298 GV--------------TVF----PSAANFLLARVP---DAAQTFDRLLARKVLIKNVSKMH-------------------  337 (367)
T ss_dssp             TC--------------EEC----CCSSSEEEEECS---CHHHHHHHHHTTTEECEECGGGC-------------------
T ss_pred             Cc--------------EEC----CCCCeEEEEECC---CHHHHHHHHHHCCeEEEECCccC-------------------
Confidence            21              111    224667788776   35667777777888877765421                   


Q ss_pred             hcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 016612          353 ARGLTEDLVRISVGI-EDVNDLISDLDKALR  382 (386)
Q Consensus       353 ~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  382 (386)
                        +..++++|+|++. ++++++++.|+++++
T Consensus       338 --~~~~~~iRis~~~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          338 --PLLANCLRVTVSTPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             --GGGTTEEEEECCCHHHHHHHHHHHHHHTC
T ss_pred             --CCCCCEEEEecCCHHHHHHHHHHHHHHhc
Confidence              1136789999974 778888888888765

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.96  E-value=3.8e-27  Score=218.15  Aligned_cols=299  Identities=17%  Similarity=0.177  Sum_probs=196.2

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEeCcH-HHHHH-HHHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTH   88 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g-t~al~-~~~~   88 (386)
                      ..++++.+...+|. ++.+         ..  .....|...+   ..++++.+++++|.+ +.+++++| ++++. ++.+
T Consensus        30 ~~i~l~~~~~~~~~-~~~v---------a~--~~~~~Y~~~~---~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~   94 (356)
T 1fg7_A           30 GDVWLNANEYPTAV-EFQL---------TQ--QTLNRYPECQ---PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRA   94 (356)
T ss_dssp             CSEECSSCCCSSCC-CCCC---------CC--CCTTSCCCSS---CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred             ceEEeeCCCCCCCC-CHhH---------hh--hhhccCCCcc---HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHH
Confidence            46777755555664 2222         11  1234555432   467888888888876 45555555 68987 4555


Q ss_pred             hcCCC-CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHH---
Q 016612           89 LLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIR---  159 (386)
Q Consensus        89 ~~~~g-~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~---  159 (386)
                      ++++| |+|++++|+|+++..    .++..|.+++.++.+     |++++++.++ ++++|++++|+||||.+.+.+   
T Consensus        95 ~~~~g~d~Vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~  169 (356)
T 1fg7_A           95 FCEPGKDAILYCPPTYGMYSV----SAETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFR  169 (356)
T ss_dssp             HCCTTTCEEEECSSSCTHHHH----HHHHHTCEEEECCCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HhCCCCCEEEEeCCChHHHHH----HHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHH
Confidence            78899 999999999999864    445678888888753     7899999888 899999999999999998755   


Q ss_pred             HHHHHHHHcCCEEEEeCCCCCCC-ccC---C-CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCC
Q 016612          160 KIAEMAHAHGALLLVDNSIMSPV-LSR---P-LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a~~~~~-~~~---~-~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~  234 (386)
                      +|.++|+ +|+++|+||+|+... ..+   . ...+.++++.|+||++ |.+|+|+|+++++ +++.+.+......  .+
T Consensus       170 ~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~~~--~~  244 (356)
T 1fg7_A          170 TLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLAN-EEVINLLMKVIAP--YP  244 (356)
T ss_dssp             HHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEEC-HHHHHHHHHHSCS--SC
T ss_pred             HHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhh-cCchhhhEEEEeC-HHHHHHHHHhcCC--CC
Confidence            4555566 899999999987433 111   1 2236789999999999 5568999999996 5566655544332  24


Q ss_pred             CChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH
Q 016612          235 LAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  309 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~  309 (386)
                      .+...+.++...++.     +....+...++.+.+.+.+++.+.+   .          .+    .+..+.++++.++  
T Consensus       245 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~----------~~----~~~~~~~~~~~~~--  305 (356)
T 1fg7_A          245 LSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCV---E----------QV----FDSETNYILARFK--  305 (356)
T ss_dssp             SCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTE---E----------EE----CCCSSSEEEEEET--
T ss_pred             CCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCc---e----------EE----CCCCCeEEEEECC--
Confidence            566666666666654     2233344445555566666554311   0          00    0224677888886  


Q ss_pred             HhHHHHHhhcCcceeccCC-CCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHH
Q 016612          310 ALSKHVVETTKYFSITVSF-GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLD  378 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~-G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~  378 (386)
                       ...++.+.+..+|+.+++ |..+                      + .++++|||++. ++++++++.|+
T Consensus       306 -~~~~l~~~L~~~gI~v~~~g~~~----------------------~-~~~~iRis~~~~~e~~~~~~~l~  352 (356)
T 1fg7_A          306 -ASSAVFKSLWDQGIILRDQNKQP----------------------S-LSGCLRITVGTREESQRVIDALR  352 (356)
T ss_dssp             -THHHHHHHHHHTTEECEECTTST----------------------T-CTTEEEEECCCHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHCCEEEEECCCCC----------------------C-CCCeEEEEeCCHHHHHHHHHHHH
Confidence             245677777777888776 5431                      1 13579999974 44444444443

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.96  E-value=5.7e-28  Score=224.40  Aligned_cols=278  Identities=14%  Similarity=0.131  Sum_probs=191.1

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCC-----
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-----  128 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d-----  128 (386)
                      ...++++.+++++|.+  +.+++++|++++.+++..+ +||+|++++|+|+++.    ..++..|.+++.++.+.     
T Consensus        60 ~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~-~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~  134 (364)
T 1lc5_A           60 DYFHLHQALARHHQVPASWILAGNGETESIFTVASGL-KPRRAMIVTPGFAEYG----RALAQSGCEIRRWSLREADGWQ  134 (364)
T ss_dssp             TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-CCSEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTC
T ss_pred             CHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc-CCCeEEEeCCCcHHHH----HHHHHcCCeEEEEeCCcccccc
Confidence            3467888888888875  4556666679998665555 7899999999999886    34456788988888642     


Q ss_pred             -HHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc-----cC-CCCCCccEEEecc
Q 016612          129 -LDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SR-PLELGADIVMHSA  198 (386)
Q Consensus       129 -~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~-----~~-~~~~~~di~~~S~  198 (386)
                       ++++.+.++++++++++++|+||||.+.|   +++|.++|+++|+++|+|++|+....     .. ....+.++++.|+
T Consensus       135 ~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~  214 (364)
T 1lc5_A          135 LTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSL  214 (364)
T ss_dssp             CCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEES
T ss_pred             hhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEEC
Confidence             35566666678999999999999999998   89999999999999999999874332     11 1224678999999


Q ss_pred             ccccccCCCceEEEEE-EcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCc
Q 016612          199 TKFIAGHSDVMAGVLA-VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRV  274 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~  274 (386)
                      ||++ |.+|+|+|+++ ++ +++.+.+.....  ....+...++++...++.   +....+...++.+.+.+.+++.+  
T Consensus       215 sK~~-~~~G~r~G~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~--  288 (364)
T 1lc5_A          215 TKFY-AIPGLRLGYLVNSD-DAAMARMRRQQM--PWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLP--  288 (364)
T ss_dssp             TTTT-TCTTTCCEEEECCC-HHHHHHHHHHSC--TTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTST--
T ss_pred             chhh-cCCccceEEEEECC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence            9999 44578999999 65 566665554432  335666777777666665   22333344455555556665432  


Q ss_pred             ceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhc
Q 016612          275 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  354 (386)
Q Consensus       275 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~  354 (386)
                                  ++.+.    +..++++++.+++.  ...+.+.+...|+.+.+|..+.                     
T Consensus       289 ------------~~~~~----~~~g~~~~~~~~~~--~~~l~~~l~~~gi~v~~g~~~~---------------------  329 (364)
T 1lc5_A          289 ------------LLTVY----PGRANYLLLRCERE--DIDLQRRLLTQRILIRSCANYP---------------------  329 (364)
T ss_dssp             ------------TEEEC----CCSSSEEEEEESCT--TCCHHHHHHTTTEECEECTTST---------------------
T ss_pred             ------------CCEEC----CCCCeEEEEECCCc--HHHHHHHHHHCCcEEeeCcccC---------------------
Confidence                        21111    12467788887542  3345555556688877765421                     


Q ss_pred             CCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 016612          355 GLTEDLVRISVGI-EDVNDLISDLDKALRT  383 (386)
Q Consensus       355 ~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  383 (386)
                      +..++++|||++. ++++++++.|++.+++
T Consensus       330 ~~~~~~iRis~~~~~~~~~l~~~l~~~~~~  359 (364)
T 1lc5_A          330 GLDSRYYRVAIRSAAQNERLLAALRNVLTG  359 (364)
T ss_dssp             TCCTTEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHHHhhc
Confidence            1135789999974 5667888888887765

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.96  E-value=1.9e-27  Score=223.55  Aligned_cols=290  Identities=16%  Similarity=0.150  Sum_probs=204.3

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCC-CEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g-~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|.+. |.+ +++++.+++.+.+|.    ++.+++++|++++.+ +..++++| |+|++++|+|+++.    ..++..
T Consensus        69 ~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~----~~~~~~  144 (398)
T 3ele_A           69 LHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYK----VFVNAA  144 (398)
T ss_dssp             HHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHH----HHHHHT
T ss_pred             cCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhH----HHHHHc
Confidence            3567665 665 789999999888763    256666667799874 55678999 99999999999886    445678


Q ss_pred             CcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHH------cCCEEEEeCCCCCCC
Q 016612          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA------HGALLLVDNSIMSPV  182 (386)
Q Consensus       118 g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~------~~~~li~D~a~~~~~  182 (386)
                      |.+++.++.+      |++++++++++++++|++++|+||||.+.+   +++|.++|++      +|+++|+||+|+...
T Consensus       145 g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~  224 (398)
T 3ele_A          145 GARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV  224 (398)
T ss_dssp             TCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCB
T ss_pred             CCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccc
Confidence            8999998864      899999999999999999999999999987   7778899999      999999999997532


Q ss_pred             cc-----CC-CCCCccEEEeccccccccCCCceEEEEEEcChh-----HHHHHHHhhhhc-CCCCChhhHHHHHhcCCcH
Q 016612          183 LS-----RP-LELGADIVMHSATKFIAGHSDVMAGVLAVKGER-----LAKELYFLQNAE-GSGLAPFDCWICLRGVKTM  250 (386)
Q Consensus       183 ~~-----~~-~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  250 (386)
                      ..     .. ...+.++++.|+||++ |.+|+|+||++++++.     +...+....... ....+...+.++...++..
T Consensus       225 ~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  303 (398)
T 3ele_A          225 YDGIKVPFVTKYYDNTLVCYSYSKSL-SLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGAT  303 (398)
T ss_dssp             CTTCCCCCGGGTCSSEEEEEESTTTS-SCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCC
T ss_pred             cCCCCcCChHhhcCCeEEEEehhhcC-CCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCH
Confidence            21     11 1236789999999999 5557899999998652     223333333332 2344555555555544432


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCC
Q 016612          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  330 (386)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~  330 (386)
                      . ..+.+.++.+.+.+.+++..         +.      +.  . ...+.++++.++.. ....+.+.+...|+.+.+|.
T Consensus       304 ~-~~~~~~~~~~~l~~~L~~~g---------~~------~~--~-~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~  363 (398)
T 3ele_A          304 G-DINAYKENRDLLYEGLTRIG---------YH------CF--K-PDGAFYMFVKALED-DSNAFCEKAKEEDVLIVAAD  363 (398)
T ss_dssp             C-CHHHHHHHHHHHHHHHHHHT---------CC------EE--C-CSBSSEEEEECSSS-CHHHHHHHHHTTTEECEESG
T ss_pred             H-HHHHHHHHHHHHHHHHHHcC---------Ce------ec--C-CCeeEEEEEEcCCC-CHHHHHHHHHHCCEEEeCcc
Confidence            1 23455666677777776531         11      00  0 11234477777543 35677777778899888776


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      .+.                       .++++|||++.  +++++.++.|++++++
T Consensus       364 ~~~-----------------------~~~~iRis~~~~~e~i~~~l~~l~~~l~~  395 (398)
T 3ele_A          364 GFG-----------------------CPGWVRISYCVDREMIKHSMPAFEKIYKK  395 (398)
T ss_dssp             GGT-----------------------CTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            521                       14679999974  6778888888888765

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.96  E-value=1e-28  Score=230.45  Aligned_cols=295  Identities=12%  Similarity=0.110  Sum_probs=200.6

Q ss_pred             CccccCCCCchHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           46 PYDYTRSGNPTRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      ...|.+.+..+++++.+++.+.+|.    ++.+++++|++++.+ +..++++||+|+++.|+|+++.    ..++..|.+
T Consensus        53 ~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~  128 (377)
T 3fdb_A           53 AFGYQPDGSLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFF----HLLSATQRE  128 (377)
T ss_dssp             CCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHH----HHHHHHTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHH----HHHHHcCCE
Confidence            3455544444788888888877653    357777777899874 5567899999999999999886    445567888


Q ss_pred             EEEeCCC---CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC-----CC-C
Q 016612          121 VKRVNTC---DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PL-E  188 (386)
Q Consensus       121 ~~~v~~~---d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~-----~~-~  188 (386)
                      ++.++.+   |++++++.++++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|+......     +. .
T Consensus       129 ~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  208 (377)
T 3fdb_A          129 GIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVS  208 (377)
T ss_dssp             EEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSC
T ss_pred             EEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHH
Confidence            9888876   899999999888999999999999999985   7778888999999999999987532211     11 1


Q ss_pred             ---CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHHHHHHHH
Q 016612          189 ---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNA  261 (386)
Q Consensus       189 ---~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  261 (386)
                         .+.++++.|+||++ |.+|+|+|++++.++.+.+.+...........++..+.++...++.    +....+...++.
T Consensus       209 ~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  287 (377)
T 3fdb_A          209 DTAASVCITITAPSKAW-NIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNH  287 (377)
T ss_dssp             HHHHHHEEEEECSTTTT-TCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEEeChHhc-cCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence               24469999999999 5567899998886677777665554443345566555554443332    234445555666


Q ss_pred             HHHHHHHhh-CCCcceEecCCCCCCCchhhhhhccCCC-CceEEEEeCCHHhHHHHHhhcCc-ceeccCCCCcccccccc
Q 016612          262 QKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMP  338 (386)
Q Consensus       262 ~~l~~~l~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~-~gi~~~~G~~~~~~~~p  338 (386)
                      +.+.+.+++ .+.        +      .+.    ... +.++++.++......++.+.+.. .|+.+.+|..+...   
T Consensus       288 ~~l~~~L~~~~~~--------~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---  346 (377)
T 3fdb_A          288 DFLLHEIPKRIPG--------A------KIT----PMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED---  346 (377)
T ss_dssp             HHHHHHHHHHSTT--------C------EEC----CCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG---
T ss_pred             HHHHHHHHhhCCC--------c------eEe----cCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC---
Confidence            666666665 321        1      111    112 33446666442111233333333 37777776542210   


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                                        .++++|+|++.  +++++.++.|++++++.
T Consensus       347 ------------------~~~~~Ris~~~~~e~i~~~l~~l~~~l~~~  376 (377)
T 3fdb_A          347 ------------------GTGFCRLNFATSREVLEEAIDRMAKAVSHH  376 (377)
T ss_dssp             ------------------GTTEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred             ------------------CCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence                              25779999974  67778888888888764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.96  E-value=4.4e-28  Score=226.06  Aligned_cols=319  Identities=12%  Similarity=0.018  Sum_probs=211.7

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHH-
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-   84 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~-   84 (386)
                      .+++++.+...++ .++.+.++  ... ..  .....|... |.+ +++++.+++++.+|.    ++.+++++|++++. 
T Consensus        24 ~~i~l~~~~~~~~-~~~~v~~a--~~~-~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~   97 (376)
T 3ezs_A           24 RGLDLGIGEPQFE-TPKFIQDA--LKN-HT--HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN   97 (376)
T ss_dssp             CCCBCSSCCCCSC-CCHHHHHH--HHT-TG--GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred             CEEEeCCCCCCCC-CCHHHHHH--HHH-hh--hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence            7788885554455 23333332  111 11  334567765 654 788899998888775    25667777789997 


Q ss_pred             HHHHhcCC--CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHH----HHHhhhCCCceEEEEeCCCCCCccccc-
Q 016612           85 AVTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD----EVASAIGPWTKLVWVESPTNPRQQICD-  157 (386)
Q Consensus        85 ~~~~~~~~--g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~----~l~~~~~~~~~~v~~~~~~nptG~~~~-  157 (386)
                      ++..++++  ||+|++++|+|+++.    ..++..|.+++.++.++.+    ++++.+.+++++|++++|+||||.+.+ 
T Consensus        98 ~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~  173 (376)
T 3ezs_A           98 FPSFVLFDYQNPTIAYPNPFYQIYE----GAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSL  173 (376)
T ss_dssp             HHHHHTTTCSSCEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCH
T ss_pred             HHHHHcCCCCCCEEEEecCCcHhHH----HHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCCH
Confidence            55667899  999999999999885    4456788999998875322    556666668999999999999999987 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCCCCCCCcc----CCC---------CCCccEEEeccccccccCCCceEEEEEEcChhHHH
Q 016612          158 --IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (386)
Q Consensus       158 --l~~i~~la~~~~~~li~D~a~~~~~~~----~~~---------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~  222 (386)
                        +++|.++|+++|+++|+||+|+.....    ...         ..+.++++.|+||++ |.+|+|+||++++ +++.+
T Consensus       174 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~  251 (376)
T 3ezs_A          174 EELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS-SAPGLRSGFIAGD-SRLLE  251 (376)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT-TCGGGCCEEEEEC-HHHHH
T ss_pred             HHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc-CCccceeEEEeeC-HHHHH
Confidence              778888899999999999999753321    111         357789999999999 5567899999985 56666


Q ss_pred             HHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceE
Q 016612          223 ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  302 (386)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  302 (386)
                      .+...........+...+.++...++.. ...++..+..+...+.+.+.-.       ++.           .+..+.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~-------~~~-----------~~~~~~~~  312 (376)
T 3ezs_A          252 KYKAFRAYLGYTSANAIQKASEAAWLDD-RHAEFFRNIYANNLKLARKIFK-------NTL-----------IYPYSFYV  312 (376)
T ss_dssp             HHHHHHTTTCCCCCHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHST-------TCC-----------CCSBSSEE
T ss_pred             HHHHHHhhhcCCCChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHhc-------CCC-----------CCCcceEE
Confidence            6666555545566666666655444321 1122333333333333332110       111           12346677


Q ss_pred             EEEeCCHHhHHHHHhhcCc-ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHH
Q 016612          303 SFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDK  379 (386)
Q Consensus       303 ~~~~~~~~~~~~l~~~l~~-~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~  379 (386)
                      ++.++   ....+.+.+.. .|+.+.+|..+..   +                ...++++|||++  .++++++++.|++
T Consensus       313 ~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~---~----------------~~~~~~iRis~~~~~~~i~~~l~~l~~  370 (376)
T 3ezs_A          313 YLPVQ---NGENFAKTLYQNEGIITLPALYLGR---N----------------RIGADYVRLALVYDTPLLEKPLEIIET  370 (376)
T ss_dssp             EEECS---CHHHHHHHHHHHHCCBCEEGGGGCS---T----------------TTTTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EEECC---CHHHHHHHHHHhCCEEEeCcHHhCC---C----------------CCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence            77776   24556666655 6888777665221   0                124678999985  4778888888888


Q ss_pred             HHhc
Q 016612          380 ALRT  383 (386)
Q Consensus       380 ~l~~  383 (386)
                      ++++
T Consensus       371 ~l~~  374 (376)
T 3ezs_A          371 YREN  374 (376)
T ss_dssp             HHCC
T ss_pred             HHHh
Confidence            8765

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.96  E-value=7.4e-28  Score=228.43  Aligned_cols=326  Identities=15%  Similarity=0.167  Sum_probs=223.2

Q ss_pred             ceeeccCCCCCCCCC-cccceeeeeeeecCCCCCCCCccccCC-CC-chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HH
Q 016612           11 TLLMNFSNEFDPYGA-LSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~   86 (386)
                      ...++++ .++++|. .++.+.++........ ..+...|... |. +...++++.+++++|.++.+++++|++++. ++
T Consensus        64 ~~~id~~-~~~~lg~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al  141 (427)
T 2w8t_A           64 KDTILLG-TYNYMGMTFDPDVIAAGKEALEKF-GSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGII  141 (427)
T ss_dssp             EEEEECS-CCCTTCGGGCHHHHHHHHHHHHHH-CSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             ceEEEEE-CcccccCCCCHHHHHHHHHHHHHh-CCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHH
Confidence            3467888 5566774 4444443211111000 0111122222 54 578999999999999999999999998875 55


Q ss_pred             HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCC----CceEEEEeCCCCCCcccccHHHHH
Q 016612           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIA  162 (386)
Q Consensus        87 ~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~----~~~~v~~~~~~nptG~~~~l~~i~  162 (386)
                      .+++++||.|+++.+.|+++...    ++..|.+++.++..|++++++.+++    ++++|++++++||+|.+.|+++|.
T Consensus       142 ~~l~~~gd~vl~~~~~h~~~~~~----~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~  217 (427)
T 2w8t_A          142 STLAGKGEYVILDADSHASIYDG----CQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMV  217 (427)
T ss_dssp             HHHSCTTCEEEEETTCCHHHHHH----HHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHH
T ss_pred             HHhcCCCCEEEECCcccHHHHHH----HHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHH
Confidence            66789999999999999988643    4467889999998999999998875    789999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCCCCCCccC---------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh--hhhc
Q 016612          163 EMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAE  231 (386)
Q Consensus       163 ~la~~~~~~li~D~a~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~--~~~~  231 (386)
                      ++|+++|+++|+||+|+.+.+..         ....+.|++++|+||+++ ++   +|+++++++ +.+.+...  ....
T Consensus       218 ~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~---gG~v~~~~~-l~~~l~~~~~~~~~  292 (427)
T 2w8t_A          218 AVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TV---GGFVVSNHP-KFEAVRLACRPYIF  292 (427)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SC---CEEEEECCT-TGGGGGGTCHHHHS
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cC---CCEEEeCHH-HHHHHHHhcccccc
Confidence            99999999999999998765431         112357999999999995 44   499998754 44433322  1122


Q ss_pred             CCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC
Q 016612          232 GSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  308 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~  308 (386)
                      +...++....++..+++.   .....++..++.+.+.+.|++..         ++      +..  +...++++++.+++
T Consensus       293 ~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~------~~~--~~~~~~~~~~~~~~  355 (427)
T 2w8t_A          293 TASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMG---------FR------LGT--ETCDSAIVAVMLED  355 (427)
T ss_dssp             SCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHT---------CE------ESC--SSCCSSEEEEEESS
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------Cc------ccC--CCCCCCEEEEEECC
Confidence            334555555554343332   24555666777777777776531         11      100  01146789998877


Q ss_pred             HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       309 ~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                      .....++.+.+...|+.+.+|....   .|                 .+.+++|++++.    ++++++++.|++++++.
T Consensus       356 ~~~~~~l~~~L~~~Gi~v~~~~~~~---~~-----------------~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~  415 (427)
T 2w8t_A          356 QEQAAMMWQALLDGGLYVNMARPPA---TP-----------------AGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV  415 (427)
T ss_dssp             HHHHHHHHHHHHHTTEECEEECTTT---SC-----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCeEEeeeCCCC---CC-----------------CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            6667788888877888776654311   00                 124679999974    67777777777777653

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.96  E-value=1.1e-28  Score=230.14  Aligned_cols=319  Identities=15%  Similarity=0.079  Sum_probs=200.1

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCCC-----ceEEeCcHHHHHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGMAALA   84 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~gt~al~   84 (386)
                      ..++++.+...+| .+|.+.++...   .+.......|... |.+ +++++.+++.+.+|.+     +.+++++|++++.
T Consensus        26 ~~idl~~~~~~~~-~~~~v~~a~~~---~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~  101 (376)
T 2dou_A           26 GLIDLSIGSTDLP-PPEAPLKALAE---ALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLA  101 (376)
T ss_dssp             CCEECSSCCCCCC-CCHHHHHHHHH---HTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHH
T ss_pred             CEEeccCCCCCCC-CCHHHHHHHHH---HHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHH
Confidence            4677774444455 23333322111   1111123445543 332 4555555555555763     4555666679987


Q ss_pred             -HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-----CCHHHHHhhhCCCceEEEEeCCCCCCccccc-
Q 016612           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICD-  157 (386)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~-  157 (386)
                       ++.+++++||+|++++|+|+++.    ..++..|.+++.++.     .|++++++.+++++++|++++|+||||.+.+ 
T Consensus       102 ~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~  177 (376)
T 2dou_A          102 HLLLALTEPEDLLLLPEVAYPSYF----GAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADW  177 (376)
T ss_dssp             HHHHHHCCTTCEEEEESSCCHHHH----HHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCH
T ss_pred             HHHHHhcCCCCEEEECCCCcHhHH----HHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCH
Confidence             45557889999999999998886    344567888888875     3778888888778999999999999999986 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCCCCCCCcc----CCCC----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh
Q 016612          158 --IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (386)
Q Consensus       158 --l~~i~~la~~~~~~li~D~a~~~~~~~----~~~~----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~  227 (386)
                        +++|.++|+++|+++|+|++|+.....    ....    .+.++++.|+||++ |.+|+|+|+++++ +++.+.+...
T Consensus       178 ~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~  255 (376)
T 2dou_A          178 GYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSY-NLAGFRLGFALGS-EEALARLERV  255 (376)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHH-TCGGGCCEEEEEC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhc-CChhheeEEEecC-HHHHHHHHHH
Confidence              788999999999999999998753321    1121    25689999999999 4457899999986 5566666555


Q ss_pred             hhhcCCCCChhhHHHHHhcCCc----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEE
Q 016612          228 QNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  303 (386)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~  303 (386)
                      ......+.+...+.++...++.    +....+.+.++.+.+.+.+++.  +              .+.  . ...+.+++
T Consensus       256 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~--------------~~~--~-~~~~~~~~  316 (376)
T 2dou_A          256 KGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--L--------------SLL--P-PRATMYLW  316 (376)
T ss_dssp             HHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--S--------------EEC--C-CCBSSEEE
T ss_pred             HHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--c--------------Ccc--C-CCeeEEEE
Confidence            5444444566666655555543    2222333444445555555432  1              010  0 11244577


Q ss_pred             EEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHH
Q 016612          304 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKA  380 (386)
Q Consensus       304 ~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~  380 (386)
                      +.+++......+.+.+...|+.+.+|..+..                     ..++++|||++.  +++++.++.|+++
T Consensus       317 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~~~~~i~~~l~~l~~~  374 (376)
T 2dou_A          317 GRLPEGVDDLEFGLRLVERGVALAPGRGFGP---------------------GGKGFVRIALVRPLEELLEAAKRIREA  374 (376)
T ss_dssp             EECCTTCCHHHHHHHHHHTTEECEEGGGGCG---------------------GGTTEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHCCEEEcCchhhCC---------------------CCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence            7775433345677777667888777654210                     025679999975  4444445555444

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.96  E-value=1.5e-27  Score=227.45  Aligned_cols=295  Identities=14%  Similarity=0.134  Sum_probs=200.5

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC---CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA---DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~---~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      ..|+.. |.+ +++++.+++.+.+|.   ++.+++++|++++. ++..++++||+|++++|+|+++.    ..++..|.+
T Consensus       112 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~----~~~~~~g~~  187 (448)
T 3aow_A          112 LQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAAL----QAFNFYEPQ  187 (448)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTCCE
T ss_pred             hCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCE
Confidence            467765 665 777777777666676   35666666679997 45557899999999999999886    445568888


Q ss_pred             EEEeCCC----CHHHHHhhhC----C--CceEEE-EeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc--
Q 016612          121 VKRVNTC----DLDEVASAIG----P--WTKLVW-VESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--  184 (386)
Q Consensus       121 ~~~v~~~----d~~~l~~~~~----~--~~~~v~-~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~--  184 (386)
                      ++.++.+    |+++|++.++    +  ++++|+ +++|+||||.+.+   +++|.++|+++|++||+||+|+...+.  
T Consensus       188 ~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~  267 (448)
T 3aow_A          188 YIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN  267 (448)
T ss_dssp             EEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC
T ss_pred             EEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC
Confidence            8888763    8999998886    5  789985 6899999999986   678999999999999999999754321  


Q ss_pred             ---CCC---CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc------HHH
Q 016612          185 ---RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MAL  252 (386)
Q Consensus       185 ---~~~---~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  252 (386)
                         ...   ..+.++++.|+||+++  +|+|+||++++ +.+.+.+.........+.+...+.++...++.      +..
T Consensus       268 ~~~~~~~~~~~~~vi~~~S~SK~~~--~GlriG~v~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~  344 (448)
T 3aow_A          268 PEKKIKALDNEGRVIYLGTFSKILA--PGFRIGWMVGD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPE  344 (448)
T ss_dssp             CCCCTGGGCTTSCEEEEEESTTTTC--GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CCcCHHhcCCCCCEEEEccchhhcc--ccccEEEEEeC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHH
Confidence               111   2256899999999995  58999999997 55666555444333333455555555443332      222


Q ss_pred             HHHHHHHHHHHHHHHHhhC-CCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCc
Q 016612          253 RVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSV  331 (386)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~  331 (386)
                      ..+.+.++.+.+.+.+++. +.       ++      .+.  . +..+.++++.++.......+.+.+...|+.+.+|..
T Consensus       345 ~~~~~~~~~~~l~~~L~~~~~~-------g~------~~~--~-p~~g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~  408 (448)
T 3aow_A          345 IRKFYKPRRDAMLEALEEFMPE-------GV------KWT--K-PEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEA  408 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCT-------TC------EEC--C-CSBSSEEEEECSTTCCHHHHHHHHHHTTEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-------Ce------EEe--C-CCccEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchh
Confidence            2333445555555666542 20       11      111  1 123567788886433356677777777888777654


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          332 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      +..-                   +..++++|+|++.   +++++.+++|.+++++
T Consensus       409 f~~~-------------------~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~  444 (448)
T 3aow_A          409 FYAH-------------------RDVKNTMRLNFTYVDEDKIMEGIKRLAETIKE  444 (448)
T ss_dssp             GSTT-------------------CCCCSEEEEECSSSCTHHHHHHHHHHHHHHHH
T ss_pred             hcCC-------------------CCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            2100                   1135789999974   6788888888888764

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.96  E-value=4.6e-28  Score=227.17  Aligned_cols=292  Identities=15%  Similarity=0.175  Sum_probs=194.7

Q ss_pred             ccccCCCCc-hHHHHHHHHHhhcC--C--CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           47 YDYTRSGNP-TRDALESLLAKLDK--A--DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        47 ~~y~~~g~~-~~~~l~~~l~~~~g--~--~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      ..|.....+ +++++.+++.+.+|  .  ++.+++++|++++.+ +.+++++||+|++++|+|+++.    ..++..|.+
T Consensus        59 ~~y~~~~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~  134 (390)
T 1d2f_A           59 FGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFY----KAIEGNQRT  134 (390)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHH----HHHHHTTCE
T ss_pred             CCCCCCChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHH----HHHHHCCCE
Confidence            445543335 67777777777666  3  356666667799974 5557789999999999999886    344567888


Q ss_pred             EEEeCC--------CCHHHHHhhhCC-CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          121 VKRVNT--------CDLDEVASAIGP-WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       121 ~~~v~~--------~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      ++.++.        .|++++++.+++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+||+|+.....    
T Consensus       135 ~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~  214 (390)
T 1d2f_A          135 VMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPH  214 (390)
T ss_dssp             EEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCC
T ss_pred             EEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence            888775        479999999985 8999999999999999987   899999999999999999999754321    


Q ss_pred             -CCCCC--Cc-cEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh-hcC-CCCChhhHHHHHhcCC----cHHHHH
Q 016612          185 -RPLEL--GA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEG-SGLAPFDCWICLRGVK----TMALRV  254 (386)
Q Consensus       185 -~~~~~--~~-di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~----~~~~~~  254 (386)
                       +....  +. |. +.|+||++ |++|+|+|+++++++.+.+.+..... ... ...+...+.++...++    .+....
T Consensus       215 ~~~~~~~~~~~d~-~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  292 (390)
T 1d2f_A          215 IPWSNVARGDWAL-LTSGSKSF-NIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALR  292 (390)
T ss_dssp             CCGGGTCCSSEEE-EECSHHHH-TCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cCHHHcchhhHhh-ccCccHhh-cccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence             11112  21 67 99999999 55678999999876667666655444 222 2445555544433332    122333


Q ss_pred             HHHHHHHHHHHHHHhh-CCCcceEecCCCCCCCchhhhhhccCCCCce-EEEEeCCH-HhHHHHHhhcC-cceeccCCCC
Q 016612          255 EKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSV-LSFLTGSL-ALSKHVVETTK-YFSITVSFGS  330 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~l~-~~gi~~~~G~  330 (386)
                      +...++.+.+.+.+++ .+        ++...          .+.+++ +++.++.. ....++.+.+. ..|+.+.+|.
T Consensus       293 ~~~~~~~~~l~~~L~~~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~  354 (390)
T 1d2f_A          293 IYLKDNLTYIADKMNAAFP--------ELNWQ----------IPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGY  354 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHCS--------SCCCC----------CCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGG
T ss_pred             HHHHHHHHHHHHHHHhhCC--------CCEEe----------cCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCcc
Confidence            4445555566666654 32        22111          123344 45676532 23566777776 5788887765


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      .+..                     ..++++|||++.  +++++.++.|.+++++
T Consensus       355 ~f~~---------------------~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~  388 (390)
T 1d2f_A          355 TYGE---------------------EGRGFVRLNAGCPRSKLEKGVAGLINAIRA  388 (390)
T ss_dssp             GGCG---------------------GGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCC---------------------CCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            4210                     025679999975  5566667777776654

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.96  E-value=1.7e-27  Score=222.83  Aligned_cols=281  Identities=15%  Similarity=0.155  Sum_probs=198.7

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHH
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA  133 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  133 (386)
                      +...++++.+++++|.++.+++++|++++. ++..++++||.|++++|.|+++..    .++..|.+++.++..|+++++
T Consensus        84 ~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~  159 (384)
T 1bs0_A           84 VVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLE----AASLSPSQLRRFAHNDVTHLA  159 (384)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH----HHHTSSSEEEEECTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHH----HHHHcCCCEEEeCCCCHHHHH
Confidence            478899999999999988999999998876 556678999999999999988753    445679999999988999999


Q ss_pred             hhhCC---CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-------CCCCCCccEEEeccccccc
Q 016612          134 SAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       134 ~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-------~~~~~~~di~~~S~sK~~~  203 (386)
                      +.+++   +++++++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.+.       .....+.|++++|+||+++
T Consensus       160 ~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~  239 (384)
T 1bs0_A          160 RLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG  239 (384)
T ss_dssp             HHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS
T ss_pred             HHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh
Confidence            98864   3789999999999999999999999999999999999999766432       1122357999999999995


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhh--hhcCCCCChhhHHHHHhcCCcHH-----HHHHHHHHHHHHHHHHHhhCCCcce
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKK  276 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~  276 (386)
                       ++|   |+++++ +++.+.+....  ...+...++..+.++..+++.+.     ...++..++.+.+.+.|++..    
T Consensus       240 -~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----  310 (384)
T 1bs0_A          240 -VSG---AAVLCS-STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP----  310 (384)
T ss_dssp             -SCC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS----
T ss_pred             -ccC---cEEEeC-HHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC----
Confidence             554   999986 55655554432  22223456655555444443322     333444555555555555431    


Q ss_pred             EecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          277 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       277 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                                 +.+.    ...++++++.+++.....++.+.+...|+.+.+|....   .                 ..
T Consensus       311 -----------~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~---~-----------------~~  355 (384)
T 1bs0_A          311 -----------FTLA----DSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPT---V-----------------PA  355 (384)
T ss_dssp             -----------CEEC----SCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTS---S-----------------CT
T ss_pred             -----------Cccc----CCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCC---C-----------------CC
Confidence                       1111    12456777777654556778888877788877655311   0                 01


Q ss_pred             CCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          357 TEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       357 ~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      .++++||+++....++.++.+.++|++
T Consensus       356 ~~~~~Ri~~~~~~~~~~i~~~~~~l~~  382 (384)
T 1bs0_A          356 GTARLRLTLTAAHEMQDIDRLLEVLHG  382 (384)
T ss_dssp             TCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCHHHHHHHHHHHHh
Confidence            246799999865555555555555543

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.96  E-value=8e-28  Score=225.91  Aligned_cols=325  Identities=16%  Similarity=0.128  Sum_probs=211.2

Q ss_pred             cceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC-----C-ceEEeCcHHH
Q 016612           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA-----D-RALCFTSGMA   81 (386)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~-----~-~~i~~~~gt~   81 (386)
                      ....++++.+...++ .++.+.++.  .. ..  .....|... |.+ +++++.+++.+.+|.     + +.+++++|++
T Consensus        29 g~~~i~l~~~~~~~~-~~~~v~~a~--~~-~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~  102 (396)
T 3jtx_A           29 GMEAVPLHIGEPKHP-TPKVITDAL--TA-SL--HELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSRE  102 (396)
T ss_dssp             TCCCEECSCCSCCSC-CCHHHHHHH--HH-TG--GGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHH
T ss_pred             CCCeEEeCCcCCCCC-CCHHHHHHH--HH-Hh--hhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHH
Confidence            356788885544444 233333221  11 11  134567766 665 899999999887773     3 5666666679


Q ss_pred             HHHH-HHHhcCCC-----CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCC
Q 016612           82 ALAA-VTHLLGTG-----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPT  149 (386)
Q Consensus        82 al~~-~~~~~~~g-----~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~  149 (386)
                      ++.+ +..++++|     |+|++++|+|+++.    ..++..|.+++.++.+      |++++++++++++++|++++|+
T Consensus       103 al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~  178 (396)
T 3jtx_A          103 ALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYE----GATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPN  178 (396)
T ss_dssp             HHHHHHHHHCCC---CCCCEEEEEESCCHHHH----HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSC
T ss_pred             HHHHHHHHHhCCCCccCCCEEEEcCCCcHhHH----HHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCC
Confidence            9874 55678886     79999999998875    4456788898888753      7788888888899999999999


Q ss_pred             CCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC--CC-----------CCCccEEEeccccccccCCCceEEEE
Q 016612          150 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--PL-----------ELGADIVMHSATKFIAGHSDVMAGVL  213 (386)
Q Consensus       150 nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~--~~-----------~~~~di~~~S~sK~~~g~~g~~~G~i  213 (386)
                      ||||.+.+   +++|.++|+++|+++|+||+|+......  +.           ..+.++++.|+||.+ +.+|+|+||+
T Consensus       179 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~  257 (396)
T 3jtx_A          179 NPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS-NVPGLRSGFV  257 (396)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS-SCGGGCCEEE
T ss_pred             CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc-CCcccceEEE
Confidence            99999987   5559999999999999999997533221  11           256789999999988 4567899999


Q ss_pred             EEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC---cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhh
Q 016612          214 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  290 (386)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i  290 (386)
                      +++ +++.+.+.......+...+...+.++...++   .+....+.+.++.+.+.+.+++..          .      +
T Consensus       258 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~----------~------~  320 (396)
T 3jtx_A          258 AGD-AELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVF----------D------V  320 (396)
T ss_dssp             EEC-HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTTS----------C------C
T ss_pred             EeC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC----------C------c
Confidence            886 5566666655555555666666655544432   233334444555555555555321          0      0


Q ss_pred             hhhccCCCCceEEEEeCCHHhHHHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--
Q 016612          291 HYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  367 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--  367 (386)
                      .  . ...+.++++.++.. ....+.+.+ +..|+.+.+|..+..-...               ....++++|||++.  
T Consensus       321 ~--~-~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~---------------~~~~~~~iRis~~~~~  381 (396)
T 3jtx_A          321 K--L-PDASFYIWLKVPDG-DDLAFARNLWQKAAIQVLPGRFLARDTEQ---------------GNPGEGYVRIALVADV  381 (396)
T ss_dssp             C--C-CSSSSEEEEECTTS-CHHHHHHHHHHHHCEECEEGGGGCCCCTT---------------CCTTTTEEEEECCSCH
T ss_pred             c--C-CCeeEEEEEECCCC-CHHHHHHHHHHHCCEEEeCChHhCCcccc---------------cCCCCCeEEEEEcCCH
Confidence            0  1 12356777777642 244555555 4458888777653211000               01236889999975  


Q ss_pred             CChHHHHHHHHHHH
Q 016612          368 EDVNDLISDLDKAL  381 (386)
Q Consensus       368 ~~~~~~i~~l~~~l  381 (386)
                      +++++.++.|++++
T Consensus       382 ~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          382 ATCVKAAEDIVSLY  395 (396)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            55666666666654

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.96  E-value=3.8e-27  Score=221.52  Aligned_cols=292  Identities=14%  Similarity=0.155  Sum_probs=198.6

Q ss_pred             ccccCCCCc-hHHHHHHHHHhhcC--C--CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           47 YDYTRSGNP-TRDALESLLAKLDK--A--DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        47 ~~y~~~g~~-~~~~l~~~l~~~~g--~--~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      ..|... .+ +++++.+++.+.+|  .  ++.+++++|++++. ++.+++++||+|++++|+|+++.    ..++..|.+
T Consensus        62 ~~y~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~g~~  136 (399)
T 1c7n_A           62 LGYTGP-TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFF----MAIKNQERK  136 (399)
T ss_dssp             CSSBCC-CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHH----HHHHTTTCE
T ss_pred             CCCCCC-cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHH----HHHHHcCCE
Confidence            445543 33 67777777777667  3  35666677789987 45557889999999999999986    444567888


Q ss_pred             EEEeCC--------CCHHHHHhhhC-CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          121 VKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       121 ~~~v~~--------~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      ++.++.        .|++++++.++ +++++|++++|+||||.+.|   +++|.++|+++|+++|+||+|+.....    
T Consensus       137 ~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~  216 (399)
T 1c7n_A          137 IIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEH  216 (399)
T ss_dssp             EEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCC
T ss_pred             EEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCc
Confidence            888875        37899999998 78999999999999999998   999999999999999999999753321    


Q ss_pred             -CCCC-----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCC-CCChhhHHHHHhcCC----cHHHH
Q 016612          185 -RPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICLRGVK----TMALR  253 (386)
Q Consensus       185 -~~~~-----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~  253 (386)
                       ....     .+.++++.|+||++ |++|+|+|+++++++++.+.+.......+. +.+...+.++...++    .+...
T Consensus       217 ~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  295 (399)
T 1c7n_A          217 TVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGC  295 (399)
T ss_dssp             CCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccHHHcCccccCcEEEEEeChhhc-cccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHH
Confidence             1111     24579999999999 445789999999766676666555444332 345555554444332    12333


Q ss_pred             HHHHHHHHHHHHHHHhh-CCCcceEecCCCCCCCchhhhhhccCCCCceE-EEEeCCH-HhHHHHHhhcC-cceeccCCC
Q 016612          254 VEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL-SFLTGSL-ALSKHVVETTK-YFSITVSFG  329 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~l~-~~gi~~~~G  329 (386)
                      .+...++.+.+.+.+++ .+        ++...          .+.++++ ++.++.. .....+.+.+. ..|+.+.+|
T Consensus       296 ~~~~~~~~~~l~~~L~~~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g  357 (399)
T 1c7n_A          296 IKVIDKNQRIVKDFFEVNHP--------EIKAP----------LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEG  357 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT--------TSBCC----------CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEG
T ss_pred             HHHHHHHHHHHHHHHHhhCC--------CCeEe----------cCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCc
Confidence            34455556666666655 32        12111          1233444 5677532 23556777775 678887776


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      ..+.    +                 ..++++|||++.  +++++.++.|.+++++
T Consensus       358 ~~~~----~-----------------~~~~~iRis~~~~~~~l~~~l~~l~~~l~~  392 (399)
T 1c7n_A          358 YIFG----D-----------------GGIGFERINLAAPSSVIQESLERLNKALKD  392 (399)
T ss_dssp             GGGC----G-----------------GGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             cccC----C-----------------CCCCeEEEEeccCHHHHHHHHHHHHHHHHH
Confidence            5421    0                 025679999975  5677777777777754

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.96  E-value=1e-27  Score=227.43  Aligned_cols=288  Identities=15%  Similarity=0.091  Sum_probs=192.1

Q ss_pred             ccccCC-CCchHHHHHHHHHhhcC-------CCceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           47 YDYTRS-GNPTRDALESLLAKLDK-------ADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        47 ~~y~~~-g~~~~~~l~~~l~~~~g-------~~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ..|... |.+   ++++.++++++       .++.+++++|++|+.. +..++++||+|++++|+|.++.    ..++..
T Consensus        90 ~~y~~~~g~~---~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~  162 (427)
T 3dyd_A           90 NGYAPSIGFL---SSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYK----TLAESM  162 (427)
T ss_dssp             SSCCCTTCCH---HHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHT
T ss_pred             CCCCCCCCcH---HHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHc
Confidence            456554 544   44455555544       2367777788899974 5557889999999999999885    455678


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      |.+++.++..       |++++++.++++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+.   
T Consensus       163 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~  242 (427)
T 3dyd_A          163 GIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCK  242 (427)
T ss_dssp             TCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCC
T ss_pred             CCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCc
Confidence            8888887652       899999999989999999999999999998   999999999999999999999753221   


Q ss_pred             --CCCCCC---ccEEEeccccccccCCCceEEEEEEcC------hhHHHHHHHhhhhcCCCCChhhHHHHHhcCC-----
Q 016612          185 --RPLELG---ADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----  248 (386)
Q Consensus       185 --~~~~~~---~di~~~S~sK~~~g~~g~~~G~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  248 (386)
                        .....+   ..++++|+||.++ .+|+|+|++++++      +.+.+.+...... ..+.+...+.++...++     
T Consensus       243 ~~~~~~~~~~~~vi~~~S~sK~~~-~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~~~  320 (427)
T 3dyd_A          243 YEPLATLSTDVPILSCGGLAKRWL-VPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGE  320 (427)
T ss_dssp             CCCGGGGCSSCCEEEEEESTTTSS-CGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHH
T ss_pred             CccHHHhCCCCcEEEEeeccccCC-CcCcceEEEEecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCHH
Confidence              111122   2478899999984 4678999999975      3455444443322 23445555544443332     


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----HhHHHHHhhc-Ccc
Q 016612          249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVETT-KYF  322 (386)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l-~~~  322 (386)
                      .+....++..++.+.+.+.|++.+.+              .+.  . +..+.++++.++..     .....+.+.+ ...
T Consensus       321 ~~~~~~~~~~~~~~~l~~~L~~~~g~--------------~~~--~-p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  383 (427)
T 3dyd_A          321 FYHNTLSFLKSNADLCYGALAAIPGL--------------RPV--R-PSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQ  383 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTE--------------EEE--C-CSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCc--------------eec--C-CCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHC
Confidence            23344455556666666666654321              111  0 11244556566421     2244555555 366


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      |+.+.+|..+.                       .++++|||++.  +++++.++.|.+++++
T Consensus       384 gV~v~~g~~~~-----------------------~~~~iRis~~~~~e~i~~~l~~l~~~l~~  423 (427)
T 3dyd_A          384 SVHCLPATCFE-----------------------YPNFIRVVITVPEVMMLEACSRIQEFCEQ  423 (427)
T ss_dssp             CEECEEGGGGT-----------------------CTTEEEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCcccC-----------------------CCCeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            88777765421                       25679999973  6778888888888764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.96  E-value=2.4e-27  Score=222.35  Aligned_cols=293  Identities=16%  Similarity=0.148  Sum_probs=198.6

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|... |.+ +++++.+++.+.+|.    ++.+++++|++++. ++..++++||+|++++|+|+++.    ..++..|
T Consensus        61 ~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~g  136 (391)
T 3h14_A           61 ALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYR----QILRALG  136 (391)
T ss_dssp             --------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHHTT
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcC
Confidence            3567765 655 788888888877663    35677777789987 45667899999999999998886    4456788


Q ss_pred             cEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       119 ~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      .+++.++.+       |++++++.   ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+.    
T Consensus       137 ~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~  213 (391)
T 3h14_A          137 LVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAV  213 (391)
T ss_dssp             CEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC
T ss_pred             CEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCc
Confidence            999888864       77888776   7899999999999999987   889999999999999999999753321    


Q ss_pred             CCCC-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHH
Q 016612          185 RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDN  260 (386)
Q Consensus       185 ~~~~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  260 (386)
                      .... .+.+++++|+||++ |++|+|+|++++++ .+.+.+...........+...+.++...++.   +....+...++
T Consensus       214 ~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  291 (391)
T 3h14_A          214 TALELTDECYVINSFSKYF-SMTGWRVGWMVVPE-DQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKAN  291 (391)
T ss_dssp             CGGGTCSSSEEEEESSSTT-CCTTSCCEEEECCG-GGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChhhcCCCEEEEEechhcc-CCccceeEEEEeCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            1112 25679999999999 55688999999874 4666666555555555666666555444442   33344455556


Q ss_pred             HHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCc-ceeccCCCCcccccccc
Q 016612          261 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKY-FSITVSFGSVKSLISMP  338 (386)
Q Consensus       261 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-~gi~~~~G~~~~~~~~p  338 (386)
                      .+.+.+.+++.+.         ...     .  . ...+.++++.++. ......+.+.+.. .|+.+.+|..+..    
T Consensus       292 ~~~l~~~l~~~~~---------~~~-----~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----  350 (391)
T 3h14_A          292 RKLMLERLPKAGF---------TRI-----A--P-PDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP----  350 (391)
T ss_dssp             HHHHHHHHHHHTC---------CCB-----C--C-CCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT----
T ss_pred             HHHHHHHHHHcCC---------Ccc-----c--C-CCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC----
Confidence            6666666665421         000     0  0 1123455666643 2235566666554 4888877765321    


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                                      +..++++|+|++.  +++++.++.|++++++.
T Consensus       351 ----------------~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~  382 (391)
T 3h14_A          351 ----------------ERGAGTLRFSYARATADIEEGLDRLEAFMQAR  382 (391)
T ss_dssp             ----------------TTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred             ----------------CCCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence                            0125779999975  67777888888887654

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.96  E-value=3.7e-28  Score=229.63  Aligned_cols=287  Identities=15%  Similarity=0.114  Sum_probs=199.3

Q ss_pred             chHHHHHHHHHhhcCCCc--eE-EeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKADR--AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~--~i-~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +..+++++++++++|.+.  .+ ++++|++++. ++.+++++||+|+++++.|++..  +...++..|.+++.++.+   
T Consensus        44 ~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  121 (416)
T 3isl_A           44 GIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGT  121 (416)
T ss_dssp             HHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCC
Confidence            468899999999999873  33 5567789987 55667999999999999997732  235677889999998875   


Q ss_pred             --CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 --DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 --d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                        |+++++++++ +++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... +....+.|++++|+||++.
T Consensus       122 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~  201 (416)
T 3isl_A          122 VFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLS  201 (416)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTC
T ss_pred             CCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccC
Confidence              8999999998 68999999999999999999999999999999999999999877653 3344578999999999977


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhh------------------------------------h-hc-CCCCChhhHHHHHh
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQ------------------------------------N-AE-GSGLAPFDCWICLR  245 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~------------------------------------~-~~-~~~~~~~~~~~~~~  245 (386)
                      |+.|  +|++++++ ++.+.+....                                    . .. ....+......+..
T Consensus       202 g~~g--~g~~~~~~-~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  278 (416)
T 3isl_A          202 VPSG--MAPITYNE-RVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALRE  278 (416)
T ss_dssp             CCSS--EEEEEECH-HHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHH
T ss_pred             CCCC--eEEEEECH-HHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHH
Confidence            7776  79998874 4544443211                                    0 00 11222222222222


Q ss_pred             cCCc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC
Q 016612          246 GVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK  320 (386)
Q Consensus       246 ~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  320 (386)
                      +++.     +....++..++.+.+.+.|++.         ++.      ++.......+.++++.+++.....++.+.+.
T Consensus       279 al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---------g~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  343 (416)
T 3isl_A          279 GVRLVLEEGLETRFERHRHHEAALAAGIKAM---------GLR------LFGDDSCKMPVVTCVEIPGGIDGESVRDMLL  343 (416)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT---------TCC------BCSCGGGBCTTEEEEECCTTCCHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc---------CCE------eccCccccCCcEEEEeCCCCCCHHHHHHHHH
Confidence            2222     2334444555555666666542         111      1111111235778888854334667777776


Q ss_pred             cc-eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCC-hHHHHHHHHHHHhcC
Q 016612          321 YF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IED-VNDLISDLDKALRTG  384 (386)
Q Consensus       321 ~~-gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~-~~~~i~~l~~~l~~~  384 (386)
                      .. |+.+++|..                       ...++++|++++    .++ ++++++.|++++++.
T Consensus       344 ~~~gi~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~  390 (416)
T 3isl_A          344 AQFGIEIASSFG-----------------------PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH  390 (416)
T ss_dssp             HHHCEECBCCCS-----------------------TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCEEEecCCC-----------------------CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence            55 888776642                       123678999993    345 889999999988765

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.96  E-value=1.2e-27  Score=223.89  Aligned_cols=287  Identities=14%  Similarity=0.134  Sum_probs=201.5

Q ss_pred             CchHHHHHHHHHhhcCCC--c-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC---
Q 016612           54 NPTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---  126 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~--~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---  126 (386)
                      .++++++++++++++|.+  + .+++++|++|+. ++.+++++||+|++++|+|++..  +...++..|.+++.++.   
T Consensus        52 ~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  129 (386)
T 2dr1_A           52 RKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYEPG  129 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecCCC
Confidence            357899999999999986  5 445667779987 45557899999999999998721  13556678899988886   


Q ss_pred             --CCHHHHHhhh--CCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          127 --CDLDEVASAI--GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       127 --~d~~~l~~~~--~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                        .|++++++.+  .+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... +....++|++++|+||+
T Consensus       130 ~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~  209 (386)
T 2dr1_A          130 KAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKA  209 (386)
T ss_dssp             CCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTST
T ss_pred             CCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEecccc
Confidence              4899999998  578999999999999999999999999999999999999999876643 33345789999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHH----------------Hhh--hhcCCCCChhhHHHHHhcCCc------HHHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELY----------------FLQ--NAEGSGLAPFDCWICLRGVKT------MALRVEKQ  257 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~----------------~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  257 (386)
                      ++++.|  +|++++++ .+.+.+.                ...  .......+...+.++..+++.      +....++.
T Consensus       210 ~~~~~g--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~  286 (386)
T 2dr1_A          210 FGVPPG--LAIGAFSE-RFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMY  286 (386)
T ss_dssp             TCCCSS--CEEEEECH-HHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCCc--eEEEEECH-HHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            987755  79999875 4544331                111  112223444444444433332      33445556


Q ss_pred             HHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccc
Q 016612          258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISM  337 (386)
Q Consensus       258 ~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~  337 (386)
                      .++.+.+.+.|++. .        ++-..      +.....+.++++.++......++.+.+...|+.+.+|...     
T Consensus       287 ~~~~~~l~~~L~~~-g--------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~-----  346 (386)
T 2dr1_A          287 EKRAKMVREGVREI-G--------LDILA------EPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGS-----  346 (386)
T ss_dssp             HHHHHHHHHHHHHT-T--------CCBSS------CTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGG-----
T ss_pred             HHHHHHHHHHHHHc-C--------CeeCc------CccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccc-----
Confidence            66677777777654 1        11110      0001146788888864334667777777778877766531     


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          338 PCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       338 p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                                        ..++++||+++.    ++++++++.|++++++
T Consensus       347 ------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  378 (386)
T 2dr1_A          347 ------------------VKEKTFRIGHMGYMKFEDIQEMLDNLREVINE  378 (386)
T ss_dssp             ------------------GTTTEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                              025679999973    7777888888877764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.96  E-value=4.2e-28  Score=228.46  Aligned_cols=292  Identities=15%  Similarity=0.097  Sum_probs=197.6

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCCC-----ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ..|... |.+ +++++.+++++.+|.+     +.+++++|++++. ++..++++||+|++++|+|+++..    .++..|
T Consensus        79 ~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~g  154 (404)
T 2o1b_A           79 QKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLA----GVLLAD  154 (404)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHH----HHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH----HHHHCC
Confidence            356664 554 6777777777766753     4555666678987 455578899999999999999864    445678


Q ss_pred             cEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----C
Q 016612          119 VVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R  185 (386)
Q Consensus       119 ~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~  185 (386)
                      .+++.++.+      |++++++.+++++++|++++|+||||.+.+   +++|.++|+++|++||+|++|+...+.    +
T Consensus       155 ~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~  234 (404)
T 2o1b_A          155 GKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPS  234 (404)
T ss_dssp             CEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCC
T ss_pred             CEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCC
Confidence            888888753      678888888778999999999999999985   788999999999999999999754321    1


Q ss_pred             CCCC----CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHHHH
Q 016612          186 PLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQ  257 (386)
Q Consensus       186 ~~~~----~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  257 (386)
                      ....    +.++++.|+||++ |.+|+|+|+++++ +++.+.+...........+...++++...++.    +....+.+
T Consensus       235 ~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  312 (404)
T 2o1b_A          235 ILASENGKDVAIEIYSLSKGY-NMSGFRVGFAVGN-KDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVF  312 (404)
T ss_dssp             GGGSTTHHHHEEEEEESTTTT-TCGGGCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhhcCCCCCCEEEEEecchhc-cCchhheEeEecC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            1222    4579999999999 4457899999986 55666665555444445566656555444332    22333344


Q ss_pred             HHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC-CceEEEEeCCHHhHHHHHhhcC-cceeccCCCCccccc
Q 016612          258 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLI  335 (386)
Q Consensus       258 ~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~-~~gi~~~~G~~~~~~  335 (386)
                      .++.+.+.+.+++..         +.      +.    ... +.++++.++......++.+.+. ..|+.+.+|..+.. 
T Consensus       313 ~~~~~~l~~~L~~~g---------~~------~~----~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-  372 (404)
T 2o1b_A          313 KTRRDRFEAMLAKAD---------LP------FV----HAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGE-  372 (404)
T ss_dssp             HHHHHHHHHHHHHTT---------CC------EE----CCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCG-
T ss_pred             HHHHHHHHHHHHhcC---------Ce------ec----CCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCc-
Confidence            555556666665431         11      11    112 3457777754323456666654 46888777654210 


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                                          ..++++|||++.  +++++.++.|.+++++.
T Consensus       373 --------------------~~~~~iRis~~~~~e~l~~~l~~l~~~l~~~  403 (404)
T 2o1b_A          373 --------------------NGNRYVRISLALDDQKLDEAAIRLTELAYLY  403 (404)
T ss_dssp             --------------------GGTTEEEEECCSCTTHHHHHHHHHHGGGGGG
T ss_pred             --------------------CCCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Confidence                                025679999974  67778888888877653

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.96  E-value=6.8e-28  Score=225.21  Aligned_cols=285  Identities=15%  Similarity=0.095  Sum_probs=199.5

Q ss_pred             chHHHHHHHHHhhcCCCc----eEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKADR----ALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~----~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +..+++++++++++|.+.    .+++++|++++.++.+++++||+|+++++.|++.  .+..+++..|.+++.++.+   
T Consensus        35 ~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~  112 (384)
T 3zrp_A           35 EALAYSLKGLRYVMGASKNYQPLIIPGGGTSAMESVTSLLKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGD  112 (384)
T ss_dssp             HHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHHHGGGGCCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHHHHHhhcCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCC
Confidence            468889999999998763    6667777899885455789999999999998663  2346667889999999875   


Q ss_pred             --CHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 --d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                        |++++++.+++ ++++|++++++||||.+.|+++|.++|+++|+++|+|++++.+... +....+.|++++|+||+++
T Consensus       113 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~  192 (384)
T 3zrp_A          113 YVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALG  192 (384)
T ss_dssp             CCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTC
T ss_pred             CCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCccccc
Confidence              89999999986 8999999999999999999999999999999999999999877653 2334578999999999997


Q ss_pred             cCCCceEEEEEEcChhHHHHH-------------HHhhh---h----cC---CCCChhhHHHHHhcCCc-----HHHHHH
Q 016612          204 GHSDVMAGVLAVKGERLAKEL-------------YFLQN---A----EG---SGLAPFDCWICLRGVKT-----MALRVE  255 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~-------------~~~~~---~----~~---~~~~~~~~~~~~~~~~~-----~~~~~~  255 (386)
                      |+.|  +|+++++++ +.+.+             .....   .    ..   ...+......+..+++.     +....+
T Consensus       193 ~~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~  269 (384)
T 3zrp_A          193 SAAG--LGLLLLSPK-ALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIK  269 (384)
T ss_dssp             CCSS--EEEEEECHH-HHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCc--eEEEEECHH-HHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            7776  799998754 43333             11111   1    00   12233333322222221     234444


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhc-cCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ-AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  334 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~  334 (386)
                      +..++.+.+.+.+++. .        +.      ++... ....+.++++.+++ .....+.+.+...|+.+++|.... 
T Consensus       270 ~~~~~~~~l~~~L~~~-g--------~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~-  332 (384)
T 3zrp_A          270 RHTMVASAIRAGLEAL-G--------LE------IVARRPESYSNTVTGVILKV-ADPQKVLAGTVNEGVEFAPGVHPA-  332 (384)
T ss_dssp             HHHHHHHHHHHHHHHT-T--------CC------BSCSSGGGBCSSEEEEECSS-SCHHHHHHHHHTTTCCCEECCCTT-
T ss_pred             HHHHHHHHHHHHHHHC-C--------Ce------EccCcccccCccEEEEECCC-CCHHHHHHHHHHCCEEEecCCCCC-
Confidence            5555666666666654 1        11      11000 11235677888865 346677777777788777665210 


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          335 ISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       335 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                                             .+++|++++    .++++++++.|++++++.
T Consensus       333 -----------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~  363 (384)
T 3zrp_A          333 -----------------------FKYFRIGHMGWVTPNDAIIAISVIERTLRKL  363 (384)
T ss_dssp             -----------------------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------cCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence                                   156999986    477888888888887653

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.96  E-value=3.2e-27  Score=224.20  Aligned_cols=298  Identities=19%  Similarity=0.173  Sum_probs=198.8

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|... |.+ +++++.+++.+.+|.    + +.+++++|++++.+ +..++++||+|++++|.|+++..    .++..
T Consensus        70 ~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~----~~~~~  145 (429)
T 1yiz_A           70 ANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP----MVKAA  145 (429)
T ss_dssp             GGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH----HHHHT
T ss_pred             ccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH----HHHHc
Confidence            3467665 554 788888888776663    3 45555555799874 55578899999999999999864    34567


Q ss_pred             CcEEEEeCC---------------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCC
Q 016612          118 GVVVKRVNT---------------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (386)
Q Consensus       118 g~~~~~v~~---------------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~  179 (386)
                      |.+++.++.               .|++++++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+||+|+
T Consensus       146 g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~  225 (429)
T 1yiz_A          146 GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE  225 (429)
T ss_dssp             TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             CCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccc
Confidence            888877764               3789999999889999999999999999985   8999999999999999999987


Q ss_pred             CCCc-----cCC--C--CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC--
Q 016612          180 SPVL-----SRP--L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK--  248 (386)
Q Consensus       180 ~~~~-----~~~--~--~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  248 (386)
                      ...+     ...  .  ..+.|+++.|+||++ +++|+|+|+++++ +++.+.+...........+...+.++...++  
T Consensus       226 ~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~  303 (429)
T 1yiz_A          226 HMVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWAYGP-EALLKNLQMVHQNCVYTCATPIQEAIAVGFETE  303 (429)
T ss_dssp             TCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCEEEESC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCcChhhccCCcCceEEEecchhcc-CCCCcceEEEEeC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHhcc
Confidence            4321     111  1  246799999999998 4567999999987 5566656554443333444544443333222  


Q ss_pred             ---------cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH----------
Q 016612          249 ---------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL----------  309 (386)
Q Consensus       249 ---------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~----------  309 (386)
                               .+....+...++.+.+.+.+++.. +              .+.  . ...+.++++.++..          
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------------~~~--~-~~~g~~~~~~~~~~~~~~~~~~~~  365 (429)
T 1yiz_A          304 LKRLKSPECYFNSISGELMAKRDYMASFLAEVG-M--------------NPT--V-PQGGYFMVADWSSLDSKVDLTQET  365 (429)
T ss_dssp             HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHT-C--------------EEE--E-CSBSSEEEEECCSSCTTTTCCSSS
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHhCC-C--------------ccc--C-CCcceEEEEEcccccccccccccc
Confidence                     233334445555666666665431 1              111  0 11256777777542          


Q ss_pred             --HhHHHHHhhcC-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          310 --ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       310 --~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                        ....++.+.+. ..|+.+.+|..+..-  +    .          .+..++++|||++.  +++++.++.|++++++
T Consensus       366 ~~~~~~~l~~~l~~~~gv~v~~g~~f~~~--~----~----------~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~  428 (429)
T 1yiz_A          366 DARKDYRFTKWMTKSVGLQGIPPSAFYSE--P----N----------KHLGEDFVRYCFFKKDENLQKAAEILRKWKGS  428 (429)
T ss_dssp             SSCHHHHHHHHHHHHTSEECBCGGGGSCG--G----G----------GGGTTTEEEEECCSCHHHHHHHHHHHHHHSCC
T ss_pred             cCCCHHHHHHHHHHhCCEEEeCchHhCCC--c----c----------cCCCCCeEEEEecCCHHHHHHHHHHHHHhccC
Confidence              23556666654 678887776542100  0    0          00125789999974  6677778888777654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.96  E-value=1.9e-28  Score=228.60  Aligned_cols=298  Identities=17%  Similarity=0.139  Sum_probs=192.7

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHhc----CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~~----~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      +..+++++++++++|.+  +.+++++|++++.+ +.+++    ++||+|+++++.|+++...+. .++..|.+++.++.+
T Consensus        43 ~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~  121 (382)
T 4hvk_A           43 EAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPVG  121 (382)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTTCEEEEECBC
T ss_pred             HHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcCCEEEEeccC
Confidence            46889999999999987  35566666789874 45555    899999999999999876653 334678999999865


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC-CCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~~~di~~~S~sK~  201 (386)
                           |++++++++++++++|++++|+||||.+.|+++|.++|+++|+ +|+|++++.+.... ....+.|++++|+||+
T Consensus       122 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~  200 (382)
T 4hvk_A          122 KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDI  200 (382)
T ss_dssp             TTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGG
T ss_pred             CCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHh
Confidence                 8999999999999999999999999999999999999999999 99999998776532 2234789999999998


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhh-------hcCCCCChhhHHHHHhcCCcH----HHHHHHHHHHHHHHHHHHhh
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQN-------AEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~  270 (386)
                      + |+.|  +|+++++++..   +.....       ......+......+..++...    ....++..++.+.+.+.+++
T Consensus       201 ~-g~~g--~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  274 (382)
T 4hvk_A          201 Y-GPKG--VGALWIRKEAK---LQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK  274 (382)
T ss_dssp             T-SCTT--CEEEEEETTCC---CCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             c-CCCc--eEEEEEcCccC---cCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence            6 5666  57777765431   111110       011122333333333332222    22233333444444444443


Q ss_pred             CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHH
Q 016612          271 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  350 (386)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~  350 (386)
                      .+              +..++........+++++.+++. ....+.+.+..+|+.+++|..+......        +...
T Consensus       275 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~~--------~~~~  331 (382)
T 4hvk_A          275 IE--------------ESYLNGHPEKRLPNNVNVRFSYI-EGESIVLSLDMAGIQASTGSACSSKTLQ--------PSHV  331 (382)
T ss_dssp             ST--------------TEEECSCSSSBCTTEEEEEETTC-CHHHHHHHHHHTTCBCBCC--------C--------CCHH
T ss_pred             CC--------------CeEEeCCccccCCCEEEEEECCC-CHHHHHHHHHHCCEEEeeCCccCCCCCc--------chHH
Confidence            32              22222111112235778877543 2566777777788988887653211000        0011


Q ss_pred             HHhcCCC----CCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          351 RQARGLT----EDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       351 ~~~~~~~----~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                      ....+..    ++++|++++.    ++++++++.|++++++
T Consensus       332 ~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~  372 (382)
T 4hvk_A          332 LMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             HHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            1222332    5789999983    6677778877777654

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=2.8e-27  Score=217.31  Aligned_cols=308  Identities=14%  Similarity=0.127  Sum_probs=205.0

Q ss_pred             cceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEeCcH-HHHHHHHH
Q 016612           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALAAVT   87 (386)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g-t~al~~~~   87 (386)
                      ...+++++.+.+++|. +|.+.++.....     .....|   +.+...++++.+++++|.+ +.+++++| ++++.++.
T Consensus        15 ~~~~i~l~~n~~~~~~-~~~v~~a~~~~~-----~~~~~y---~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~   85 (337)
T 3p1t_A           15 AAQAVCLAFNENPEAV-EPRVQAAIAAAA-----ARINRY---PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRIS   85 (337)
T ss_dssp             CCCCEECSSCCCCSCC-CHHHHHHHHHHG-----GGTTSC---CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCCCC-CHHHHHHHHHhh-----hhhccC---CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHH
Confidence            3467888855456662 233333211111     112334   2356788999999999886 45555555 58888776


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~  162 (386)
                      ..+ +||+|++++|+|+++.    ..++..|.+++.++.+     |++++++.  .+++++++++|+||||.+.|++++.
T Consensus        86 ~~~-~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~  158 (337)
T 3p1t_A           86 AEF-SSMRFVTAWPGFDGYR----ARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELD  158 (337)
T ss_dssp             HHS-TTSEEEEESSSCSHHH----HHHTTSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHH
T ss_pred             Hhc-CCCeEEEeCCCcHHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHH
Confidence            666 9999999999999885    5566789999998854     78888876  4789999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCCCCCCc--c-CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhh
Q 016612          163 EMAHAHGALLLVDNSIMSPVL--S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  239 (386)
Q Consensus       163 ~la~~~~~~li~D~a~~~~~~--~-~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (386)
                      ++|+++++ +|+|++|+....  . .....+.+++++|+||++ |++|+|+||++++ +.+.+.+.....  ....+...
T Consensus       159 ~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~~--~~~~~~~~  233 (337)
T 3p1t_A          159 QLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSY-GLAGLRLGALFGP-SELIAAMKRKQW--FCNVGTLD  233 (337)
T ss_dssp             HHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTT-CCTTTCCEEEECC-HHHHHHHHTTSC--TTCSCHHH
T ss_pred             HHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhc-cCcchheEEEEeC-HHHHHHHHhhcC--CCCCCHHH
Confidence            99999997 566999873211  1 122236789999999999 6668899999986 445554544322  23445555


Q ss_pred             HHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHH
Q 016612          240 CWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  316 (386)
Q Consensus       240 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~  316 (386)
                      +.++...++.   +..+.++..++.+.+.+.+++..         +...          ...++++++...+..   .+.
T Consensus       234 ~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~~~~~~~~~~~~---~~~  291 (337)
T 3p1t_A          234 LHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG---------YRVA----------SSEANFVLVENAAGE---RTL  291 (337)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT---------CCBC----------CCSSSEEEEECTTTH---HHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc---------CEEC----------CCCCeEEEEEcCCHH---HHH
Confidence            5555444443   23344445555566666665531         1111          234678888775433   344


Q ss_pred             hhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 016612          317 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  383 (386)
Q Consensus       317 ~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  383 (386)
                      +.+...|+.+++|..+.                       .++++|||++. ++++++++.|++.+++
T Consensus       292 ~~l~~~gi~v~~g~~~~-----------------------~~~~iRis~~~~~~~~~l~~al~~~~~~  336 (337)
T 3p1t_A          292 RFLRERGIQVKDAGQFG-----------------------LHHHIRISIGREEDNDRLLAALAEYSDH  336 (337)
T ss_dssp             HHHHHTTEECEEGGGGT-----------------------CCSEEEEECCCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHCCeEEEECccCC-----------------------CCCeEEEecCCHHHHHHHHHHHHHHhhc
Confidence            55556688877766421                       14679999985 6778888888776543

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.96  E-value=2.3e-26  Score=213.15  Aligned_cols=278  Identities=13%  Similarity=0.140  Sum_probs=198.2

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----C
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D  128 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d  128 (386)
                      ...++++.++++++.+  +.++++||++++.+++..+   |+|+++.|+|+++.    ..++..|.+++.++.+     +
T Consensus        62 ~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~---d~vi~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~  134 (361)
T 3ftb_A           62 NYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF---EKILIIVPSYAEYE----INAKKHGVSVVFSYLDENMCID  134 (361)
T ss_dssp             TCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC---SEEEEEESCCTHHH----HHHHHTTCEEEEEECCTTSCCC
T ss_pred             cHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc---CcEEEecCChHHHH----HHHHHcCCeEEEeecCcccCCC
Confidence            4568888888888864  5566677779998776666   89999999999886    4455678999888854     6


Q ss_pred             HHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-------CCCCCCccEEEecc
Q 016612          129 LDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSA  198 (386)
Q Consensus       129 ~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-------~~~~~~~di~~~S~  198 (386)
                      ++++++.+++ ++++++++|+||||.+.+   +++|.++|+++|+++|+|++|+.....       .....+.++++.|+
T Consensus       135 ~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  213 (361)
T 3ftb_A          135 YEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAM  213 (361)
T ss_dssp             HHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEES
T ss_pred             HHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeC
Confidence            7899999988 999999999999999986   677888888999999999998743321       11123556889999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcc
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVK  275 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~  275 (386)
                      ||.+ |.+|+|+|++++.++++.+.+.....  ....+...+.++...++..   ..+.+...++.+.+.+.+++.+.+.
T Consensus       214 sK~~-~~~G~r~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  290 (361)
T 3ftb_A          214 TKFF-AMPGIRFGYGITNNKEIAAKIKAKQN--PWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIK  290 (361)
T ss_dssp             SSTT-SCGGGCCEEEEESCHHHHHHHHTTSC--TTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred             hhhc-CCCCcceeEEEeCCHHHHHHHHhhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999 55678999998556777666654433  2356667777777777642   3334445556666666666543211


Q ss_pred             eEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcC
Q 016612          276 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  355 (386)
Q Consensus       276 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~  355 (386)
                      .             +.    ...++++++.++. .....+.+.+...|+.+++|..+.                     +
T Consensus       291 ~-------------~~----~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~g~~~~---------------------~  331 (361)
T 3ftb_A          291 R-------------VF----SPHANFVLCRLEN-ISGEKLYDSLLKEDIVIRRCCNFI---------------------G  331 (361)
T ss_dssp             E-------------EE----CCSSSEEEEEESS-SCHHHHHHHHHTTTEECEECTTST---------------------T
T ss_pred             e-------------ec----CCCCeEEEEEcCC-CCHHHHHHHHHHCCeEEeeCccCC---------------------C
Confidence            0             11    2346778888865 235677777777788887776421                     1


Q ss_pred             CCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 016612          356 LTEDLVRISVGI-EDVNDLISDLDKALRT  383 (386)
Q Consensus       356 ~~~~~iRis~~~-~~~~~~i~~l~~~l~~  383 (386)
                      ..++++|+|++. ++++++++.+++..+.
T Consensus       332 ~~~~~iRis~~~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          332 LDDSFVRFAIKDEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             CCTTEEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            246789999985 5567888888777654

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.96  E-value=1.4e-28  Score=233.05  Aligned_cols=294  Identities=15%  Similarity=0.174  Sum_probs=198.8

Q ss_pred             CCccccCCCCchHHHHHHHHHhhcC--CC--ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           45 GPYDYTRSGNPTRDALESLLAKLDK--AD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        45 ~~~~y~~~g~~~~~~l~~~l~~~~g--~~--~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ..+.|+....++++++++++++.+|  .+  ..+++++|++|+. ++..++++||+|+++.|.|+++.    ..++..|.
T Consensus        90 ~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~----~~~~~~g~  165 (421)
T 3l8a_A           90 HIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFA----RTIRLNDH  165 (421)
T ss_dssp             CCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHH----HHHHHTTE
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHH----HHHHHCCC
Confidence            3455665444588999999999887  32  4666666678987 45567899999999999999876    44456788


Q ss_pred             EEEEeCCC--------CHHHHHhhhC-CCceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          120 VVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       120 ~~~~v~~~--------d~~~l~~~~~-~~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      +++.++..        |+++++++++ +++++|++++|+||+|.+.   ++++|.++|+++|+++|+||+|+.....   
T Consensus       166 ~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~  245 (421)
T 3l8a_A          166 RLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT  245 (421)
T ss_dssp             EEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred             EEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence            88888753        8999999998 7999999999999999884   5899999999999999999998742211   


Q ss_pred             --CCCC-----CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCC-CCChhhHHHHHhcCCc----HHH
Q 016612          185 --RPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICLRGVKT----MAL  252 (386)
Q Consensus       185 --~~~~-----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~  252 (386)
                        ....     .+.++++.|+||++ +.+|+++|+++++++++.+.+.......+. +.++..+.++...++.    +..
T Consensus       246 ~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~  324 (421)
T 3l8a_A          246 HHSLNTLDASYKDFTIILSSATKTF-NIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEE  324 (421)
T ss_dssp             CCCGGGSCTTGGGTEEEEECSHHHH-TCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred             CccHHHcCchhcCcEEEEEeChhhc-cCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHH
Confidence              1111     25569999999999 445789999999867777766555433322 4555555444433321    233


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceE-EEEeCCH-HhHHHHHhhcC-cceeccCCC
Q 016612          253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL-SFLTGSL-ALSKHVVETTK-YFSITVSFG  329 (386)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~l~-~~gi~~~~G  329 (386)
                      ..+...++.+.+.+.+++.+.+        .      +.    .+.++++ ++.++.. .....+.+.+. ..|+.+.+|
T Consensus       325 ~~~~~~~~~~~l~~~L~~~~~i--------~------~~----~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g  386 (421)
T 3l8a_A          325 LKTVIEGNIKLVIKELEAKTKI--------K------VM----EPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDG  386 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSC--------E------EE----CCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEG
T ss_pred             HHHHHHHHHHHHHHHHHhCCCc--------e------Ee----CCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECc
Confidence            4445555666666666653211        1      11    1223344 4666431 12445556553 458877776


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                      ..+..                     ..++++||+++.  +++++.++.|+++++
T Consensus       387 ~~f~~---------------------~~~~~iRi~~~~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          387 AHFGK---------------------EGKYFARLNVATPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             GGGCG---------------------GGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred             hhhCC---------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            54210                     136789999973  667777888877765

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.2e-27  Score=223.37  Aligned_cols=294  Identities=13%  Similarity=0.113  Sum_probs=190.9

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcHHHHHH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAALA   84 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~gt~al~   84 (386)
                      ...++++.+...++ .++.+.++...   .+.......|++. |.+ +++++.+++.+.+|.+    +.+++++|++++.
T Consensus        57 ~~~i~l~~g~~~~~-~~~~v~~a~~~---~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~  132 (447)
T 3b46_A           57 RELINLGQGFFSYS-PPQFAIKEAQK---ALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGIL  132 (447)
T ss_dssp             SCCEECCCCSCSSC-CCHHHHHHHHH---HTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHH
T ss_pred             CCeEEccCCCCCCC-CCHHHHHHHHH---HHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence            46788885544444 22222222111   1111134567776 765 7888888888877652    4555566679987


Q ss_pred             -HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-----------------CCHHHHHhhhCCCceEEEEe
Q 016612           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------------CDLDEVASAIGPWTKLVWVE  146 (386)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----------------~d~~~l~~~~~~~~~~v~~~  146 (386)
                       ++..++++||+|++++|.|+++.    ..++..|.+++.++.                 .|+++|++.+++++++|+++
T Consensus       133 ~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~  208 (447)
T 3b46_A          133 SCLMGLLNAGDEVIVFEPFFDQYI----PNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIIN  208 (447)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHcCCCCEEEEeCCCchhHH----HHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEe
Confidence             55667899999999999999986    344567888777653                 27899999998899999999


Q ss_pred             CCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCCCcc----CCC-----CCCccEEEeccccccccCCCceEEEEE
Q 016612          147 SPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----RPL-----ELGADIVMHSATKFIAGHSDVMAGVLA  214 (386)
Q Consensus       147 ~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~~~~----~~~-----~~~~di~~~S~sK~~~g~~g~~~G~i~  214 (386)
                      +|+||||.++   ++++|.++|++||+++|+||+|+...+.    ...     ..+.++++.|+||++ +.+|+|+||++
T Consensus       209 ~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~riG~~~  287 (447)
T 3b46_A          209 TPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSF-AATGWRIGWVL  287 (447)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHT-TCTTSCCEEEE
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhc-CCcchhhEEEE
Confidence            9999999997   4899999999999999999999753321    111     236799999999999 55678999999


Q ss_pred             EcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc------HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCch
Q 016612          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  288 (386)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  288 (386)
                      ++++++.+.+...........+...+.++...++.      +....+.+.++.+.+.+.|++..         +.     
T Consensus       288 ~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~-----  353 (447)
T 3b46_A          288 SLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG---------LP-----  353 (447)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT---------CC-----
T ss_pred             eCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCC---------Ce-----
Confidence            93456666565544333334455555444444332      22233444455555555555431         11     


Q ss_pred             hhhhhccCCCCceEEEEeCCH---------------HhHHHHHhhcC-cceeccCCCCc
Q 016612          289 ELHYSQAKGAGSVLSFLTGSL---------------ALSKHVVETTK-YFSITVSFGSV  331 (386)
Q Consensus       289 ~i~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~l~-~~gi~~~~G~~  331 (386)
                       +.  . +..+.++++.++..               ....++.+.+. ..|+.+.+|..
T Consensus       354 -~~--~-~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~  408 (447)
T 3b46_A          354 -YT--A-PEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTE  408 (447)
T ss_dssp             -EE--C-CSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGG
T ss_pred             -ec--C-CCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchH
Confidence             10  0 12255667776431               23456666654 46888777654

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.95  E-value=6e-27  Score=221.83  Aligned_cols=297  Identities=16%  Similarity=0.143  Sum_probs=201.8

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCCC-----ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ..|... |.+ +++++.+++.+.+|.+     +.+++++|++++. ++..++++||+|++++|.|+++.    ..++..|
T Consensus        61 ~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g  136 (422)
T 3fvs_A           61 NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYE----PMTMMAG  136 (422)
T ss_dssp             GSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhH----HHHHHcC
Confidence            567766 664 7888888888877753     3555666679987 45557899999999999999986    4455678


Q ss_pred             cEEEEeCC-----------------CCHHHHHhhhCCCceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCC
Q 016612          119 VVVKRVNT-----------------CDLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       119 ~~~~~v~~-----------------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~  178 (386)
                      .+++.++.                 .|++++++++++++++|++++|+||||.+.   ++++|.++|+++|+++|+|++|
T Consensus       137 ~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~  216 (422)
T 3fvs_A          137 GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVY  216 (422)
T ss_dssp             CEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             CEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccc
Confidence            88877764                 278999999999999999999999999998   5999999999999999999999


Q ss_pred             CCCCcc-----CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC--
Q 016612          179 MSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV--  247 (386)
Q Consensus       179 ~~~~~~-----~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  247 (386)
                      +...+.     +..    ..+.++++.|+||++ |.+|+|+|++++++ .+.+.+...........+...+.++...+  
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  294 (422)
T 3fvs_A          217 QWMVYDGHQHISIASLPGMWERTLTIGSAGKTF-SATGWKVGWVLGPD-HIMKHLRTVHQNSVFHCPTQSQAAVAESFER  294 (422)
T ss_dssp             TTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCEEEECCH-HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             hhhccCCCCCCChhhcccccCcEEEEecchhcc-CCccceEEEEEeCH-HHHHHHHHHHhhccCCCCcHHHHHHHHHHhh
Confidence            753221     111    125679999999999 55678999999874 55555555544444455555555544333  


Q ss_pred             ---------CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHh-------
Q 016612          248 ---------KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL-------  311 (386)
Q Consensus       248 ---------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------  311 (386)
                               ..+....+.+.++.+.+.+.+++.. + ....                +..+.++++.+.....       
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~  356 (422)
T 3fvs_A          295 EQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG-L-KPII----------------PQGSYFLITDISDFKRKMPDLPG  356 (422)
T ss_dssp             HHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTT-C-EEEB----------------CSBSSEEEEECHHHHHHCCCCCC
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC-C-eecC----------------CCeeeEEEEechhhccccccccc
Confidence                     2234445556666677777776542 1 1111                1235566666532110       


Q ss_pred             ------HHHHHhh-cCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          312 ------SKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       312 ------~~~l~~~-l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                            ..++.+. +...|+.+.+|..+..-  +              .....++++|||++.  +++++.++.|+++++
T Consensus       357 ~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~--~--------------~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~  420 (422)
T 3fvs_A          357 AVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV--P--------------HQKHFDHYIRFCFVKDEATLQAMDEKLRKWKV  420 (422)
T ss_dssp             CTTCCHHHHHHHHHHHHHCEECEEGGGGSCH--H--------------HHTTSCSEEEEECCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcCEEEeCcHHhcCC--c--------------CCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence                  2344444 34468877777652210  0              001236889999974  777888888888887


Q ss_pred             c
Q 016612          383 T  383 (386)
Q Consensus       383 ~  383 (386)
                      +
T Consensus       421 ~  421 (422)
T 3fvs_A          421 E  421 (422)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.95  E-value=3.9e-27  Score=220.63  Aligned_cols=286  Identities=18%  Similarity=0.121  Sum_probs=199.7

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAV-THL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +...++++.+++++|.+  +.+++++|++++.++ ..+ +++||+|++++|+|+++...+..+++..|.+++.++.+   
T Consensus        59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  138 (390)
T 1elu_A           59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL  138 (390)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCC
Confidence            45788999999999976  567777888999754 556 68999999999999998765555566778899888862   


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHH----HcCCEEEEeCCCCCCCccC-CCCCCccEEEecc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH----AHGALLLVDNSIMSPVLSR-PLELGADIVMHSA  198 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~----~~~~~li~D~a~~~~~~~~-~~~~~~di~~~S~  198 (386)
                          |++++++.+++++++|++++|+||||.+.|+++|.++|+    ++|+++|+|++|+.+.... ....+.|++++|+
T Consensus       139 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~  218 (390)
T 1elu_A          139 NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG  218 (390)
T ss_dssp             SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEES
T ss_pred             CccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccc
Confidence                789999999889999999999999999999999999999    9999999999998765432 2245789999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHhh----------------------hhcCCCCChhhHHHHHhcCC------cH
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQ----------------------NAEGSGLAPFDCWICLRGVK------TM  250 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~------~~  250 (386)
                      ||++.++.|  +|+++++++ +.+.+....                      .......+.....++..+++      .+
T Consensus       219 ~K~~~~~~g--~G~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~  295 (390)
T 1elu_A          219 HKWFAGPAG--VGGLYIHGD-CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA  295 (390)
T ss_dssp             SSTTCCCTT--CEEEEECTT-TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred             cccccCCCc--eEEEEECHH-hHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            997767665  699998754 433222110                      11111223333322222222      13


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCC
Q 016612          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  330 (386)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~  330 (386)
                      ....++..++.+.+.+.|++.+.+              .++.+ .++.++++.|.++......++.+.+...|+.+.+|.
T Consensus       296 ~~~~~~~~~~~~~l~~~L~~~~g~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~  360 (390)
T 1elu_A          296 EERYQAICQRSEFLWRGLNQLPHV--------------HCLAT-SAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA  360 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTE--------------EESCS-SCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCc--------------EEecC-ccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC
Confidence            445556666777777777664321              11110 023578888888532235567777767788766543


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                                                .++++|||++....++.++.+.++|++.
T Consensus       361 --------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          361 --------------------------DPDCIRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             --------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             --------------------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence                                      1456999997766667777777777654

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.95  E-value=1e-27  Score=225.97  Aligned_cols=293  Identities=18%  Similarity=0.153  Sum_probs=195.4

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ..|... |.+ +++++.+++.+.+|.    ++.+++++|++++.+ +..++++||+|++++|+|+++.    ..++..|.
T Consensus        72 ~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~  147 (406)
T 1xi9_A           72 NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYT----GLVKFYGG  147 (406)
T ss_dssp             CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHHTTC
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHH----HHHHHcCC
Confidence            356665 554 778888888776553    356666666799874 5557899999999999998875    44456788


Q ss_pred             EEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----C
Q 016612          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R  185 (386)
Q Consensus       120 ~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~  185 (386)
                      +++.++.+       |++++++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.+.+.    .
T Consensus       148 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~  227 (406)
T 1xi9_A          148 KPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHIS  227 (406)
T ss_dssp             EEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCC
T ss_pred             EEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCC
Confidence            88877642       789999999889999999999999999976   999999999999999999999764431    1


Q ss_pred             CCC--CCc-cEEEeccccccccCCCceEEEEE--EcCh---hHHHHHHHhhhhcCCCCChhhHHHHHhcCC----cHHHH
Q 016612          186 PLE--LGA-DIVMHSATKFIAGHSDVMAGVLA--VKGE---RLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALR  253 (386)
Q Consensus       186 ~~~--~~~-di~~~S~sK~~~g~~g~~~G~i~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  253 (386)
                      ...  .+. |++++|+||++ +++|+|+|+++  ++++   ++.+.+....... ...+...+.++...++    .+...
T Consensus       228 ~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~  305 (406)
T 1xi9_A          228 PGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEY  305 (406)
T ss_dssp             HHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHcCCCceEEEEecccccc-CCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHH
Confidence            111  356 89999999999 45678999998  6641   5666565544433 3444444444433331    12333


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCce-EEEEeCC--HHhHHHHHhhcC-cceeccCCC
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV-LSFLTGS--LALSKHVVETTK-YFSITVSFG  329 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~--~~~~~~l~~~l~-~~gi~~~~G  329 (386)
                      .+...++.+.+.+.|++.+              ++.+.    ...+++ +++.++.  .....++.+.+. ..|+.+.+|
T Consensus       306 ~~~~~~~~~~l~~~L~~~~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g  367 (406)
T 1xi9_A          306 MKKLKERRDYIYKRLNEIP--------------GISTT----KPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHG  367 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTST--------------TEECC----CCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEG
T ss_pred             HHHHHHHHHHHHHHHHhCC--------------CCeee----cCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCc
Confidence            3444555555555555432              11111    112233 3345542  123556666664 678877766


Q ss_pred             CccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHhcC
Q 016612          330 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       330 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+..                     ..++++|||++  .+++++.++.|++++++.
T Consensus       368 ~~f~~---------------------~~~~~lRis~~~~~~~i~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          368 SGFGE---------------------YGAGHFRAVFLPPIEILEEAMDRFEKFMKER  403 (406)
T ss_dssp             GGGCG---------------------GGTTBEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred             hhcCC---------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence            54210                     02567999997  366777888888887653

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.95  E-value=7.6e-27  Score=218.16  Aligned_cols=287  Identities=17%  Similarity=0.140  Sum_probs=193.4

Q ss_pred             cccCCCCchHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           48 DYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        48 ~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      .|...  ....++++.++++++.+  +.+++++|++++.+ +..++++||+|++++|+|+++.    ..++..|.+++.+
T Consensus        56 ~y~~~--~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v  129 (381)
T 1v2d_A           56 QYAPP--AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYL----PDAFLAGAKARLV  129 (381)
T ss_dssp             SCCCT--TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEE
T ss_pred             CCCCC--CCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEEEEE
Confidence            45543  13457777888888875  56777777899874 5557899999999999999986    3455678888888


Q ss_pred             CCC--------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----CCC--
Q 016612          125 NTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL--  187 (386)
Q Consensus       125 ~~~--------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~~~--  187 (386)
                      +.+        |++++++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+.    +..  
T Consensus       130 ~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~  209 (381)
T 1v2d_A          130 RLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF  209 (381)
T ss_dssp             ECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH
T ss_pred             eCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh
Confidence            753        799999999889999999999999999986   899999999999999999999754321    111  


Q ss_pred             CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC------cHHHHHHHHHHHH
Q 016612          188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK------TMALRVEKQQDNA  261 (386)
Q Consensus       188 ~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  261 (386)
                      ..+.|+++.|+||++ +++|+|+|++++++ ++.+.+...........+...+.++...++      .+....+...++.
T Consensus       210 ~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  287 (381)
T 1v2d_A          210 APERTFTVGSAGKRL-EATGYRVGWIVGPK-EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRR  287 (381)
T ss_dssp             CTTTEEEEEEHHHHT-TCGGGCCEEEECCT-TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeechhhc-CCcccceEEEEeCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            347899999999999 55578999999874 455555444433333444544444433332      2333444555666


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      +.+.+.+++..         +      .++  . ...+.++++.+++.+    +.+.+...|+.+.+|..+..   +   
T Consensus       288 ~~l~~~L~~~g---------~------~~~--~-~~~~~~~~~~~~~~~----~~~~l~~~gi~v~~g~~~~~---~---  339 (381)
T 1v2d_A          288 DLLAGGLRAMG---------L------RVY--V-PEGTYFLMAELPGWD----AFRLVEEARVALIPASAFYL---E---  339 (381)
T ss_dssp             HHHHHHHHHTT---------C------CEE--C-CSBSSEEEEECTTCC----HHHHHHHTCEECEEGGGGCS---S---
T ss_pred             HHHHHHHHHCC---------C------Eec--C-CCcceEEEEecChHh----HHHHHHhCCEEEecchHhCC---C---
Confidence            66666666521         1      111  0 112456777775432    44445556777766654210   0   


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          342 SHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                                   +..++++|||++.  ++++++++.|.+++++
T Consensus       340 -------------~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~  370 (381)
T 1v2d_A          340 -------------DPPKDLFRFAFCKTEEELHLALERLGRVVNS  370 (381)
T ss_dssp             -------------SCCTTEEEEECCSCHHHHHHHHHHHHHHC--
T ss_pred             -------------CCCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence                         0135789999975  5667777777777654

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.95  E-value=1.2e-27  Score=225.65  Aligned_cols=287  Identities=12%  Similarity=0.096  Sum_probs=197.1

Q ss_pred             chHHHHHHHHHhhcCCC--c-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +..+++++++++++|.+  + .+++++|++++. ++..++++||+|++++++|++..  +...++..|.+++.++.+   
T Consensus        46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  123 (411)
T 3nnk_A           46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGE  123 (411)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCC
Confidence            46788999999999886  2 345567789987 55667899999999999997631  135566789999988875   


Q ss_pred             --CHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 --d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                        |++++++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... +....+.|++++|+||++.
T Consensus       124 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~  203 (411)
T 3nnk_A          124 VFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLG  203 (411)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTC
T ss_pred             CCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccC
Confidence              89999999985 8999999999999999999999999999999999999999876543 3345578999999999977


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhh-----------------------------------hh-cCCCCChhhHHHHHhcC
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQ-----------------------------------NA-EGSGLAPFDCWICLRGV  247 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~-----------------------------------~~-~~~~~~~~~~~~~~~~~  247 (386)
                      ++.|  +|++++++ ++.+.+....                                   .. .....+......+..++
T Consensus       204 ~~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  280 (411)
T 3nnk_A          204 GPSG--TSPITLSA-RMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECA  280 (411)
T ss_dssp             CCSS--EEEEEECH-HHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHH
T ss_pred             CCCc--eEEEEECH-HHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHH
Confidence            7776  79999874 4554444322                                   00 00112222222222222


Q ss_pred             Cc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc
Q 016612          248 KT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  322 (386)
Q Consensus       248 ~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  322 (386)
                      +.     +....++..++.+.+.+.|++..         +.      ++.......+.++++.++......++.+.+...
T Consensus       281 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  345 (411)
T 3nnk_A          281 RLILQEGLDYGIARHKLHGDALVKGIQAMG---------LE------TFGDLKHKMNNVLGVVIPQGINGDQARKLMLED  345 (411)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT---------CC------BCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC---------CE------eCCCcccccccEEEEECCCCCCHHHHHHHHHHh
Confidence            21     23334445555566666666531         11      111111224577888885433456677766554


Q ss_pred             -eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-c----cCChHHHHHHHHHHHhcC
Q 016612          323 -SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       323 -gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~----~~~~~~~i~~l~~~l~~~  384 (386)
                       |+.+++|..                       ...++++||++ +    .++++++++.|++++++.
T Consensus       346 ~gi~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~  390 (411)
T 3nnk_A          346 FGIEIGTSFG-----------------------PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL  390 (411)
T ss_dssp             HSEEEEECCG-----------------------GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             cCeEEeCccC-----------------------CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence             787665532                       11356899998 5    367888888888888764

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.95  E-value=3.1e-27  Score=223.85  Aligned_cols=299  Identities=20%  Similarity=0.189  Sum_probs=194.8

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHhc----CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAV-THLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~~----~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      +..+++++++++++|.+  +.+++++|++|+.++ .+++    ++||+|+++++.|+++...+... +..|.+++.++.+
T Consensus        68 ~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~  146 (423)
T 3lvm_A           68 EAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQ  146 (423)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCEEEEeccC
Confidence            36788999999999987  677778888998744 4454    37999999999999987665333 6679999999875


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |++++++++++++++|++++++||||.+.|+++|.++|+++|++||+|++++.+... +....+.|++++|+||+
T Consensus       147 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~  226 (423)
T 3lvm_A          147 RNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKI  226 (423)
T ss_dssp             TTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTT
T ss_pred             CCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHh
Confidence                 899999999999999999999999999999999999999999999999999877653 34456789999999997


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhh-------hcCCCCChhhHHHHHhcCCcH----HHHHHHHHHHHHHHHHHHhh
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQN-------AEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~  270 (386)
                      + |+.|  +|+++++++.... +.....       ......+......+..+++.+    ....++..++.+.+.+.+++
T Consensus       227 ~-g~~g--~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  302 (423)
T 3lvm_A          227 Y-GPKG--IGALYVRRKPRVR-IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD  302 (423)
T ss_dssp             T-SCSS--CEEEEECBTTBCC-CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             c-CCCC--eEEEEEeccccCC-CCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6 5666  6888887543221 211111       111122333333332333222    22233334444444444443


Q ss_pred             CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHH
Q 016612          271 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  350 (386)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~  350 (386)
                      .+              +..++.......++++.+.+... ....+.+.+..  +.+..|..+.....        .+...
T Consensus       303 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~--i~v~~g~~~~~~~~--------~~~~~  357 (423)
T 3lvm_A          303 IE--------------EVYLNGDLEHGAPNILNVSFNYV-EGESLIMALKD--LAVSSGSACTSASL--------EPSYV  357 (423)
T ss_dssp             ST--------------TEEEESCSTTBCTTEEEEEETTS-CHHHHHHHTTT--EECBCCCC-----C--------CCCHH
T ss_pred             CC--------------CEEEeCCccccCCCeEEEEeCCC-CHHHHHHHHhh--heeccCccccCCCc--------cccHH
Confidence            32              22222111112245777777443 35667777766  66666654221100        00111


Q ss_pred             HHhcCCC----CCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          351 RQARGLT----EDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       351 ~~~~~~~----~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                      ...++..    ++++||+++.    ++++++++.|++++++
T Consensus       358 ~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~  398 (423)
T 3lvm_A          358 LRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR  398 (423)
T ss_dssp             HHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            1222332    4789999974    6677777777777754

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.95  E-value=1.4e-26  Score=218.49  Aligned_cols=296  Identities=19%  Similarity=0.207  Sum_probs=198.6

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|... |.+ +++++.+++.+.+|.    ++.+++++|++++. ++..++++||+|++++|+|+++..    .++..|
T Consensus        72 ~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g  147 (409)
T 2gb3_A           72 VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNA----FAKIAG  147 (409)
T ss_dssp             SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHHT
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHcC
Confidence            3456655 554 677777777766553    35666777789987 455578999999999999998863    445678


Q ss_pred             cEEEEeCCCC------HHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----C
Q 016612          119 VVVKRVNTCD------LDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R  185 (386)
Q Consensus       119 ~~~~~v~~~d------~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~  185 (386)
                      .+++.++.++      +++|++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.+...    .
T Consensus       148 ~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~  227 (409)
T 2gb3_A          148 VKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFAS  227 (409)
T ss_dssp             CEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC
T ss_pred             CEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCC
Confidence            8888887652      78888888889999999999999999974   899999999999999999999764331    1


Q ss_pred             CC-C-CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHHHHHH
Q 016612          186 PL-E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQD  259 (386)
Q Consensus       186 ~~-~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  259 (386)
                      .. . .+.|++++|+||++ |++|+|+|+++++++++.+.+........ ..+...+.++...++.    +....+...+
T Consensus       228 ~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  305 (409)
T 2gb3_A          228 ALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRE  305 (409)
T ss_dssp             GGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             ccccCCCCEEEEecchhcc-CCccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            11 1 35799999999999 55678999999986466666655544443 5566655555554432    2233344455


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc------eeccCCCCccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF------SITVSFGSVKS  333 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------gi~~~~G~~~~  333 (386)
                      +.+.+.+.+++..         +.-.     .  . +..+.++++.+++ ....++.+.+...      |+.+.+|..+.
T Consensus       306 ~~~~l~~~L~~~g---------~~~~-----~--~-~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~  367 (409)
T 2gb3_A          306 RVETVLKKLEEHG---------LKRF-----T--K-PSGAFYITAELPV-EDAEEFARWMLTDFNMDGETTMVAPLRGFY  367 (409)
T ss_dssp             HHHHHHHHHHHTT---------CCCB-----C--C-CSBSSEEEEECSS-SCHHHHHHHHHHSCCBTTEEEECEEGGGGC
T ss_pred             HHHHHHHHHHHcC---------ceee-----e--C-CCeeEEEEEEeCC-CCHHHHHHHHHhccccccCcEEEeCchHhC
Confidence            5555666665431         1110     0  0 1123455556652 2245566666544      88777665321


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHhc
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALRT  383 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~~  383 (386)
                      ..  +                +..++++||+++  .++++++++.|++++++
T Consensus       368 ~~--~----------------~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~  401 (409)
T 2gb3_A          368 LT--P----------------GLGKKEIRIACVLEKDLLSRAIDVLMEGLKM  401 (409)
T ss_dssp             SS--T----------------TTTSSEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             CC--C----------------CCCCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            00  0                123678999997  36677888888887754

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.95  E-value=6.2e-26  Score=215.32  Aligned_cols=293  Identities=14%  Similarity=0.130  Sum_probs=197.6

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcC----C--CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDK----A--DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g----~--~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ..|... |.+ +++++.+++.+.+|    .  ++.++++++++++. ++..++++||+|++++|+|+++..   .+....
T Consensus        77 ~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~---~~~~~~  153 (428)
T 1iay_A           77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRT  153 (428)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTT
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH---HHHHhc
Confidence            456655 554 67777777766555    2  34555555568987 556678999999999999998852   244568


Q ss_pred             CcEEEEeCCC-------CHHHHHhhhC------CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          118 GVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      |.+++.++.+       |++++++.++      +++++|++++|+||||.+.+   +++|.++|+++|+++|+||+|+..
T Consensus       154 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~  233 (428)
T 1iay_A          154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT  233 (428)
T ss_dssp             CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred             CCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence            8999888753       7889988875      37899999999999999998   999999999999999999999753


Q ss_pred             Ccc-----CCCC--CC-------cc--EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          182 VLS-----RPLE--LG-------AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       182 ~~~-----~~~~--~~-------~d--i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      .+.     +...  .+       .|  +++.|+||++ |.+|+|+|+++++++++.+.+......  ...+...+.++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g~~Glr~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~  310 (428)
T 1iay_A          234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAA  310 (428)
T ss_dssp             CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHH
T ss_pred             ccCCCCccCHHHhccccccccCCCCcEEEEecchhhc-CCCCceEEEEEeCCHHHHHHHHHHHhc--ccCCHHHHHHHHH
Confidence            221     1111  11       45  8999999999 556899999999666676655544332  3455666666666


Q ss_pred             cCCcHH-------HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH------HhH
Q 016612          246 GVKTMA-------LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL------ALS  312 (386)
Q Consensus       246 ~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~  312 (386)
                      .++...       ...+...++.+.+.+.+++..         +.      ++   +...+.++++.++..      ...
T Consensus       311 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~------~~---~~~~g~~~~~~~~~~~~~~~~~~~  372 (428)
T 1iay_A          311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVG---------IK------CL---KNNAGLFCWMDLRPLLRESTFDSE  372 (428)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CC------BC---CCSSSSEEEEECGGGCSSSSHHHH
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------Cc------cc---CCCeeEEEEEechhhcCCCchhHH
Confidence            665432       223333444555555555431         11      11   011356677777532      235


Q ss_pred             HHHHhhcCcc-eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhcC
Q 016612          313 KHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       313 ~~l~~~l~~~-gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+.+.+... |+.+.+|..+.                     ...++++||+++   .++++++++.|++++++.
T Consensus       373 ~~l~~~l~~~~gi~v~~~~~~~---------------------~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  427 (428)
T 1iay_A          373 MSLWRVIINDVKLNVSPGSSFE---------------------CQEPGWFRVCFANMDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             HHHHHHHHHTSCEECEEGGGGT---------------------CSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCEEEeCchhhC---------------------CCCCCEEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence            5677777654 88877665421                     012567999997   377888888888887653

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.95  E-value=3.7e-27  Score=222.25  Aligned_cols=294  Identities=17%  Similarity=0.191  Sum_probs=197.7

Q ss_pred             ccCC-CCc-hHHHHHHHHHhhcCC--C--ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEE
Q 016612           49 YTRS-GNP-TRDALESLLAKLDKA--D--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (386)
Q Consensus        49 y~~~-g~~-~~~~l~~~l~~~~g~--~--~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~  121 (386)
                      |... |.+ +++++.+++.+.+|.  +  +.+++++|++++.+ +..++++||+|++++|+|+++.    ..++..|.++
T Consensus        71 y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~  146 (407)
T 2zc0_A           71 YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTL----LAFEQLGAKI  146 (407)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTTCEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCEE
Confidence            6655 554 677777777666673  2  45555666799874 5557789999999999998875    4455788888


Q ss_pred             EEeCCC----CHHHHHhhhC----C--CceEEE-EeCCCCCCcccccHH---HHHHHHHHcCCEEEEeCCCCCCCcc---
Q 016612          122 KRVNTC----DLDEVASAIG----P--WTKLVW-VESPTNPRQQICDIR---KIAEMAHAHGALLLVDNSIMSPVLS---  184 (386)
Q Consensus       122 ~~v~~~----d~~~l~~~~~----~--~~~~v~-~~~~~nptG~~~~l~---~i~~la~~~~~~li~D~a~~~~~~~---  184 (386)
                      +.++.+    |++++++.++    +  ++++|+ +++|+||||.+.|.+   +|.++|+++|+++|+|++|+...+.   
T Consensus       147 ~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~  226 (407)
T 2zc0_A          147 EGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGD  226 (407)
T ss_dssp             EEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSS
T ss_pred             EEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCC
Confidence            888763    8999998887    5  788874 689999999999865   9999999999999999999754331   


Q ss_pred             --CCCC---CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-------HHH
Q 016612          185 --RPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MAL  252 (386)
Q Consensus       185 --~~~~---~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  252 (386)
                        ....   .+.++++.|+||+++  +|+|+|+++++ +++.+.+...........++..+.++...++.       +..
T Consensus       227 ~~~~~~~~~~~~~i~~~s~sK~~~--~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  303 (407)
T 2zc0_A          227 IVPLKALDNEGRVIVAGTLSKVLG--TGFRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEG  303 (407)
T ss_dssp             CCCGGGGCSSCCEEEEEESTTTTC--TTSCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTT
T ss_pred             CCChhhcCCCCCEEEEcccccccC--CCcceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHH
Confidence              1111   246789999999995  57899999987 56666665554443334455555444333322       112


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc-eeccCCCCc
Q 016612          253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSV  331 (386)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~~~~G~~  331 (386)
                      ..+...++.+.+.+.+++..       +++.      +.  . +..+.++++.++......++.+.+... |+.+.+|..
T Consensus       304 ~~~~~~~~~~~l~~~L~~~~-------~~~~------~~--~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~  367 (407)
T 2zc0_A          304 ALLGYKEKRDIMLKALENHL-------PNAE------FT--K-PIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKP  367 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-------TTSC------BC--C-CSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGG
T ss_pred             HHHHHHHHHHHHHHHHHHhC-------CCCE------Ee--c-CCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchh
Confidence            23334455555666665421       1111      11  0 123567788875433456777777777 888877754


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhcC
Q 016612          332 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRTG  384 (386)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~~  384 (386)
                      +..   +                +..++++|||++.   ++++++++.|++++++.
T Consensus       368 ~~~---~----------------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          368 FYT---D----------------ESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             GCS---S----------------SCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHH
T ss_pred             ccC---C----------------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence            210   0                0135789999974   78888999998888653

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.95  E-value=2.2e-27  Score=229.21  Aligned_cols=296  Identities=15%  Similarity=0.101  Sum_probs=196.1

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHHH-HHhc-CCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAAV-THLL-GTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~~-~~~~-~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ....|... |.+ +++++.+++.+..|.    ++.++++++++++..+ ..++ ++||.|++++|.|+++.    ..++.
T Consensus       126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~----~~~~~  201 (500)
T 3tcm_A          126 ATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYS----ASIAL  201 (500)
T ss_dssp             CSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHH----HHHHH
T ss_pred             cCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHH----HHHHH
Confidence            45678877 776 788999988877663    3566777778999755 4466 79999999999999886    44556


Q ss_pred             CCcEEEEeCC-------CCHHHHHhhhCC------CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          117 TGVVVKRVNT-------CDLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       117 ~g~~~~~v~~-------~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      .|.+++.++.       .|+++|++.+++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|+.
T Consensus       202 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~  281 (500)
T 3tcm_A          202 HGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQE  281 (500)
T ss_dssp             TTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             cCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccc
Confidence            7888888874       378999998875      7899999999999999986   67788889999999999999876


Q ss_pred             CCccCC------------C---CC-CccEEEeccccccccCCCceEEEEEEc--ChhHHHHHHHhhhhcCCCCChhhHHH
Q 016612          181 PVLSRP------------L---EL-GADIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       181 ~~~~~~------------~---~~-~~di~~~S~sK~~~g~~g~~~G~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      ..+...            .   .. ...+++.|+||.+.|.+|+|+||+++.  ++.+.+.+...... ....+...+.+
T Consensus       282 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~  360 (500)
T 3tcm_A          282 NIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASV-NLCSNITGQIL  360 (500)
T ss_dssp             CBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred             cccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhc-ccCCCHHHHHH
Confidence            443210            0   11 124788899999866778999999982  35565555544432 23344444444


Q ss_pred             HHhcCC--------------cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE-EeC
Q 016612          243 CLRGVK--------------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTG  307 (386)
Q Consensus       243 ~~~~~~--------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~  307 (386)
                      +...+.              ......+.+.++.+.+.+.|++.+              ++.+.    ...++++.| .+.
T Consensus       361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~--------------g~~~~----~~~g~~~~~~~~~  422 (500)
T 3tcm_A          361 ASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLE--------------GITCN----EAEGAMYVFPQIC  422 (500)
T ss_dssp             HHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST--------------TEECC----CCCBTTEECCEEC
T ss_pred             HHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CcEEe----cCCeEEEEeeeec
Confidence            433322              112223344455555555655432              22221    223455544 332


Q ss_pred             CHH-------------hHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHH
Q 016612          308 SLA-------------LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVND  372 (386)
Q Consensus       308 ~~~-------------~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~  372 (386)
                      .+.             ....+.+.+...|+.+.+|..+..                    ..+.++||++++  .+++++
T Consensus       423 lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~--------------------~~g~~~iRis~~~~~e~i~~  482 (500)
T 3tcm_A          423 LPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ--------------------VPGTWHFRCTILPQEDKIPA  482 (500)
T ss_dssp             CCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC--------------------CTTCCBEEEESCSCTTTHHH
T ss_pred             CchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC--------------------CCCCCEEEEEECCCHHHHHH
Confidence            211             111123455556888877765321                    013567999997  477889


Q ss_pred             HHHHHHHHHhc
Q 016612          373 LISDLDKALRT  383 (386)
Q Consensus       373 ~i~~l~~~l~~  383 (386)
                      ++++|.+++++
T Consensus       483 ~i~~l~~~~~~  493 (500)
T 3tcm_A          483 VISRFTVFHEA  493 (500)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.95  E-value=2.3e-26  Score=218.39  Aligned_cols=320  Identities=12%  Similarity=0.094  Sum_probs=206.2

Q ss_pred             eeeccCCCCC-CCCCcccce--eeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhc-CCC--c---eEEeCcHH
Q 016612           12 LLMNFSNEFD-PYGALSTPL--YQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLD-KAD--R---ALCFTSGM   80 (386)
Q Consensus        12 ~~~~~~~~~~-~~g~~~~~~--~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~-g~~--~---~i~~~~gt   80 (386)
                      .+++++.+.. .+|. ++.+  .++.   ...+.......|... |.+ +++++.+++.+.. +.+  +   .+++++|+
T Consensus        48 ~~i~l~~g~~~~~~~-~~~~~~~~a~---~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~  123 (430)
T 2x5f_A           48 TTYNATIGMATNKDG-KMFASSLDAM---FNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALT  123 (430)
T ss_dssp             CSEECCCSSCEETTE-ECCCHHHHTT---BSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHH
T ss_pred             CcEEeeeeeccCCCC-chhhHHHHHH---HHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCch
Confidence            4678885544 4553 3333  2211   111111134567665 554 5666666665432 443  5   55666667


Q ss_pred             HHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhccc-CCcEEEEeCCC------CHHHHHhhhCC---CceEEEEeCCC
Q 016612           81 AALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK-TGVVVKRVNTC------DLDEVASAIGP---WTKLVWVESPT  149 (386)
Q Consensus        81 ~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~------d~~~l~~~~~~---~~~~v~~~~~~  149 (386)
                      +++.+ +..++++||+|++++|+|+++.    ..++. .|.+++.++.+      |++++++.+++   +++++++++|+
T Consensus       124 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~  199 (430)
T 2x5f_A          124 HGLSLVGDLFVNQDDTILLPEHNWGNYK----LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPN  199 (430)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCTHHH----HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSC
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCcCccHH----HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCC
Confidence            99974 5557899999999999999885    44556 88998888752      68899988875   88999999999


Q ss_pred             CCCccccc---HHHHHHHHHH-----cCCEEEEeCCCCCCCcc-----CCC----C-CCc---cEEEeccccccccCCCc
Q 016612          150 NPRQQICD---IRKIAEMAHA-----HGALLLVDNSIMSPVLS-----RPL----E-LGA---DIVMHSATKFIAGHSDV  208 (386)
Q Consensus       150 nptG~~~~---l~~i~~la~~-----~~~~li~D~a~~~~~~~-----~~~----~-~~~---di~~~S~sK~~~g~~g~  208 (386)
                      ||||.+.+   +++|.++|++     +|+++|+|++|+.....     ...    . .+.   +++++|+||++ |.+|+
T Consensus       200 nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~  278 (430)
T 2x5f_A          200 NPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF-FAWGF  278 (430)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT-TCGGG
T ss_pred             CCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCC-CCCCC
Confidence            99999998   8999999999     99999999998753321     111    1 345   78899999999 44578


Q ss_pred             eEEEEEE--cChhHHHHHHHhhhh----cCCCCChhhHHHHHhcCC-c---HHH---HHHHHHHHHHHHHHHHhhCCCcc
Q 016612          209 MAGVLAV--KGERLAKELYFLQNA----EGSGLAPFDCWICLRGVK-T---MAL---RVEKQQDNAQKIAEFLASHPRVK  275 (386)
Q Consensus       209 ~~G~i~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~---~~~---~~~~~~~~~~~l~~~l~~~~~~~  275 (386)
                      |+|++++  +++.+.+.+......    .....+...++++...++ .   ...   ..+.+.++.+.+.+.+++..   
T Consensus       279 riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---  355 (430)
T 2x5f_A          279 RVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQ---  355 (430)
T ss_dssp             CCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGG---
T ss_pred             CeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence            9999999  235566555544433    334566666666655554 3   111   23333444444445544210   


Q ss_pred             eEecCCCCCCCchhhhhhccCCC-CceEEEEeCCHHhHHHHHhhcCc-ceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          276 KVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       276 ~~~~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~-~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                             ... ++.+.    ... +.++++.+++ .....+.+.+.. +|+.+.+|.                       
T Consensus       356 -------~~~-g~~~~----~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~-----------------------  399 (430)
T 2x5f_A          356 -------YHS-HWQAY----DFNSGYFMAIKVHD-VDPEALRKHLIDKYSIGVIALN-----------------------  399 (430)
T ss_dssp             -------GTT-TEEEC----CCCBSSEEEEEESS-SCHHHHHHHHHHHHCEECEECS-----------------------
T ss_pred             -------CCC-Cceee----CCCceEEEEeCCCC-CCHHHHHHHHHHhCCEEEecCC-----------------------
Confidence                   000 11111    112 3457777762 235567777766 788776541                       


Q ss_pred             cCCCCCeEEEEec---cCChHHHHHHHHHHHhc
Q 016612          354 RGLTEDLVRISVG---IEDVNDLISDLDKALRT  383 (386)
Q Consensus       354 ~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~  383 (386)
                          ++++|||++   .++++++++.|++++++
T Consensus       400 ----~~~iRis~~~~~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          400 ----ATDIRIAFSCVEKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             ----SSEEEEEGGGSCGGGHHHHHHHHHHHHHH
T ss_pred             ----CCeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence                456999998   47799999999988865

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.95  E-value=5e-27  Score=217.69  Aligned_cols=276  Identities=16%  Similarity=0.145  Sum_probs=191.2

Q ss_pred             HHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHH
Q 016612           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA  133 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~  133 (386)
                      ..++++.+++++|.+  +.+++++|++++. ++.+++++||+|++++|+|+++.    ..++..|.+++.++.++.-.++
T Consensus        67 ~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~  142 (360)
T 3hdo_A           67 SQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYG----TLAEVQGARVRTFGLTGDFRIA  142 (360)
T ss_dssp             CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHH----HHHHHHTCEEEEECBCTTSSBT
T ss_pred             hHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHH----HHHHHCCCEEEEeeCCCCCCHH
Confidence            367888888888854  6777777789987 45667899999999999999886    4455778999999875322222


Q ss_pred             hhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCC----CCCCccEEEeccccccccCCCc
Q 016612          134 SAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP----LELGADIVMHSATKFIAGHSDV  208 (386)
Q Consensus       134 ~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~----~~~~~di~~~S~sK~~~g~~g~  208 (386)
                      +... .+++++++++|+||||.+.|+++|.++|+++|+++|+|++|+.......    ...+.+++++|+||++ |.+|+
T Consensus       143 ~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~  221 (360)
T 3hdo_A          143 GFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSY-SLAGM  221 (360)
T ss_dssp             TCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTT-SCTTS
T ss_pred             HHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhh-cCCcc
Confidence            2222 2467999999999999999999999999999999999999874211111    1235679999999999 55678


Q ss_pred             eEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCC
Q 016612          209 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  285 (386)
Q Consensus       209 ~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  285 (386)
                      |+|+++++ +++.+.+......  .+.+...+.++...++.   +..+.++..++.+.+.+.+++.. +        .  
T Consensus       222 r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~--------~--  287 (360)
T 3hdo_A          222 RIGLAIAR-PEVIAALDKIRDH--YNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIG-Y--------D--  287 (360)
T ss_dssp             CCEEEECC-HHHHHHHHHHSCS--CCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT-C--------E--
T ss_pred             ceeeEeeC-HHHHHHHHHhCCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-C--------E--
Confidence            99999985 5666656554432  34566666655554443   33444555566666666666541 1        1  


Q ss_pred             CchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 016612          286 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  365 (386)
Q Consensus       286 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  365 (386)
                          +.    +..+.++++.+++. ...++.+.+...|+.+++|..      +                 ..++++|||+
T Consensus       288 ----~~----~~~~~~~~~~~~~~-~~~~l~~~l~~~gi~v~~~~~------~-----------------~~~~~iRis~  335 (360)
T 3hdo_A          288 ----VI----PSQGNYLFATPPDR-DGKRVYDGLYARKVLVRHFSD------P-----------------LLAHGMRISI  335 (360)
T ss_dssp             ----EC----CCSSSEEEEECTTC-CHHHHHHHHHHTTEECBCCCS------T-----------------TTTTSEEEEC
T ss_pred             ----Ec----CCCccEEEEECCCC-CHHHHHHHHHHCCEEEEECCC------C-----------------CCCCEEEEEc
Confidence                10    23467788877543 356677777778888776543      0                 1256799999


Q ss_pred             c-cCChHHHHHHHHHHHhc
Q 016612          366 G-IEDVNDLISDLDKALRT  383 (386)
Q Consensus       366 ~-~~~~~~~i~~l~~~l~~  383 (386)
                      + .++++++++.|++..+.
T Consensus       336 ~~~~e~~~l~~al~~~~~~  354 (360)
T 3hdo_A          336 GTREEMEQTLAALKEIGEG  354 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHhcc
Confidence            7 47788888888776654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.95  E-value=5.7e-27  Score=220.59  Aligned_cols=293  Identities=18%  Similarity=0.205  Sum_probs=196.2

Q ss_pred             chHHHHHHHHHhhcCC---CceEEeCcHHHHHHH-HHHh----cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC
Q 016612           55 PTRDALESLLAKLDKA---DRALCFTSGMAALAA-VTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~-~~~~----~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
                      +...++++.+++++|.   ++.+++++|++|+.+ +.++    +++||+|++++|+|++....+..+++..|.+++.++.
T Consensus        67 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  146 (406)
T 1kmj_A           67 EKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL  146 (406)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB
T ss_pred             HHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEec
Confidence            3578899999999998   256666777899874 4556    7899999999999998765555666778889988886


Q ss_pred             C-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccc
Q 016612          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (386)
Q Consensus       127 ~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK  200 (386)
                      +     |++++++.+++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... +....++|++++|+||
T Consensus       147 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K  226 (406)
T 1kmj_A          147 NPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHK  226 (406)
T ss_dssp             CTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred             CCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchh
Confidence            3     789999999989999999999999999999999999999999999999999876543 2223478999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhhhh---------------------cCCCCChhhHHHHH-hcCCcH-----HHH
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNA---------------------EGSGLAPFDCWICL-RGVKTM-----ALR  253 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~-~~~~~~-----~~~  253 (386)
                      .+ |+.|  +|+++++ +++.+.+......                     ...+.+...+.+.+ .+++.+     ...
T Consensus       227 ~~-g~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~  302 (406)
T 1kmj_A          227 LY-GPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNI  302 (406)
T ss_dssp             TT-SCTT--CEEEEEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cc-CCCC--cEEEEEe-HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence            98 6666  6999987 5555544322210                     11122333333222 222222     222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccc
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKS  333 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~  333 (386)
                      .++..++.+.+.+.+++.+              ++.++.+.  ..++++.|.+++. ....+.+.+...|+.+++|..+.
T Consensus       303 ~~~~~~~~~~l~~~L~~~~--------------~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~  365 (406)
T 1kmj_A          303 AEYEQNLMHYALSQLESVP--------------DLTLYGPQ--NRLGVIAFNLGKH-HAYDVGSFLDNYGIAVRTGHHCA  365 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTST--------------TEEEESCT--TCCSEEEEEETTC-CHHHHHHHHHHTTEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHHhcCC--------------CeEEecCC--CcCCEEEEEECCC-CHHHHHHHHhhCCcEEEeccccc
Confidence            3334444555555554432              22222111  1467888887532 24566677777788877665321


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                         .|.           ....+ .++++||+++.    ++++++++.|+++++.
T Consensus       366 ---~~~-----------~~~~g-~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~  404 (406)
T 1kmj_A          366 ---MPL-----------MAYYN-VPAMCRASLAMYNTHEEVDRLVTGLQRIHRL  404 (406)
T ss_dssp             ---HHH-----------HHHTT-CSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---hHH-----------HHhcC-CCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence               010           00111 15789999986    4666666666666543

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.95  E-value=3e-26  Score=217.94  Aligned_cols=291  Identities=15%  Similarity=0.142  Sum_probs=193.2

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcC------CCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcc-c
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDK------ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-K  116 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g------~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~-~  116 (386)
                      ..|.+. |.+ +++++.+++.+..+      .++.+++++|++++. ++..++++||.|++++|.|+++.    ..+. .
T Consensus        80 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~  155 (435)
T 3piu_A           80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFD----RDLKWR  155 (435)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHTTTT
T ss_pred             cccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHH----HHHHHh
Confidence            456665 554 66666666665443      346777777789987 45667899999999999999886    3344 6


Q ss_pred             CCcEEEEeCCC-------CHHHHHhhhCC------CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          117 TGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       117 ~g~~~~~v~~~-------d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      .|.+++.++.+       |++++++++++      ++++|++++|+||||.+.+   +++|.++|++||+++|+||+|+.
T Consensus       156 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~  235 (435)
T 3piu_A          156 TGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSG  235 (435)
T ss_dssp             TCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred             cCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccc
Confidence            88999888864       78999988864      8999999999999999986   58899999999999999999875


Q ss_pred             CCccC-----C----CC---------CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHH
Q 016612          181 PVLSR-----P----LE---------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       181 ~~~~~-----~----~~---------~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      ..+..     .    .+         .+.++++.|+||++ |.+|+|+|+++++++.+.+.+.......  ..++..+.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  312 (435)
T 3piu_A          236 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQHL  312 (435)
T ss_dssp             GCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSS-CCGGGCEEEEEESCHHHHHHHHHHGGGS--CCCHHHHHH
T ss_pred             cccCCCCCcCHHHhccccccccccCCCCCEEEEEeeeccc-CCCceeEEEEEeCCHHHHHHHHHHhhcC--CCCHHHHHH
Confidence            33211     0    01         23458899999999 5567899999997777766555444332  234444444


Q ss_pred             HHhcCCcH-------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHH-----
Q 016612          243 CLRGVKTM-------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-----  310 (386)
Q Consensus       243 ~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----  310 (386)
                      +...+...       ....+++.++.+.+.+.+++..         +      .+.   ....+.++++.++...     
T Consensus       313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~------~~~---~~~~g~~~~~~l~~~~~~~~~  374 (435)
T 3piu_A          313 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG---------I------SCL---NGNAGLFCWVDMRHLLRSNTF  374 (435)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---------C------EEC---CCCSSSEEEEECGGGSSSSSH
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------C------ccc---CCCeeEEEEEEcccccccCCc
Confidence            33333221       2223334444455555555431         1      111   0112467777775421     


Q ss_pred             -hHHHHHhhcCcc-eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          311 -LSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       311 -~~~~l~~~l~~~-gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                       ...++.+.+... |+.+.+|..+.                     ...++++||+++.   +++++.++.|++++++
T Consensus       375 ~~~~~~~~~l~~~~gi~v~~g~~~~---------------------~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~  431 (435)
T 3piu_A          375 EAEMELWKKIVYEVHLNISPGSSCH---------------------CTEPGWFRVCFANLPERTLDLAMQRLKAFVGE  431 (435)
T ss_dssp             HHHHHHHHHHHHTSCEECEEGGGGT---------------------CSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCEEEeCCcccC---------------------CCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence             345566665444 88777665421                     1136789999964   7788888888888765

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.95  E-value=6.6e-27  Score=221.21  Aligned_cols=296  Identities=21%  Similarity=0.193  Sum_probs=201.4

Q ss_pred             chHHHHHHHHHhhcCC---CceEEeCcHHHHHHH-HHHh----cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC
Q 016612           55 PTRDALESLLAKLDKA---DRALCFTSGMAALAA-VTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~-~~~~----~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
                      +...++++.+++++|.   ++.+++++|++|+.+ +..+    +++||+|++++|+|++....+...++..|.+++.++.
T Consensus        72 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~  151 (420)
T 1t3i_A           72 DAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL  151 (420)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB
T ss_pred             HHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEecc
Confidence            4577899999999998   467777888899874 4556    7899999999999998644444566677889988886


Q ss_pred             -----CCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccc
Q 016612          127 -----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (386)
Q Consensus       127 -----~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK  200 (386)
                           .|++++++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... +....+.|++++|+||
T Consensus       152 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK  231 (420)
T 1t3i_A          152 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHK  231 (420)
T ss_dssp             CTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred             CCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhh
Confidence                 3899999999999999999999999999999999999999999999999999877653 2333478999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhhhh--------------------cCCCCChhhHHHHHh-cCCc-----HHHHH
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNA--------------------EGSGLAPFDCWICLR-GVKT-----MALRV  254 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~~~~-----~~~~~  254 (386)
                      .+ |+.|  +|+++++ +++.+.+......                    ...+.+...+.+.+. +++.     +....
T Consensus       232 ~~-~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~  307 (420)
T 1t3i_A          232 MC-APTG--IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIH  307 (420)
T ss_dssp             TT-SCTT--CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hc-CCCc--eEEEEEc-hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHH
Confidence            76 5666  7999987 4455444322211                    111233333333222 2222     23334


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhcc-C-CCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA-K-GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVK  332 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~  332 (386)
                      ++..++.+.+.+.|++.+.              +.+..+.. . ..+++++|.+++. ...++.+.+...|+.+.+|..+
T Consensus       308 ~~~~~~~~~l~~~L~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~~~~~  372 (420)
T 1t3i_A          308 NYEVELTHYLWQGLGQIPQ--------------LRLYGPNPKHGDRAALASFNVAGL-HASDVATMVDQDGIAIRSGHHC  372 (420)
T ss_dssp             HHHHHHHHHHHHHHHTCTT--------------EEEESCCGGGSCBCSEEEEEETTB-CHHHHHHHHHTTTEECBCSCTT
T ss_pred             HHHHHHHHHHHHHHHhCCC--------------eEEeCCCccccccCCEEEEEECCC-CHHHHHHHHHHCCeEEeecccc
Confidence            4555566666666665432              11111100 0 2478888888642 3556777777788988877542


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                      .   .|.           ....+. ++++|||++.    ++++++++.|+++++.+
T Consensus       373 ~---~~~-----------~~~~g~-~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~  413 (420)
T 1t3i_A          373 T---QPL-----------HRLFDA-SGSARASLYFYNTKEEIDLFLQSLQATIRFF  413 (420)
T ss_dssp             C---HHH-----------HHHTTC-CCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             c---hHH-----------HHhcCC-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence            1   110           001111 5679999975    56677777777766543

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.95  E-value=4.2e-27  Score=220.66  Aligned_cols=287  Identities=15%  Similarity=0.092  Sum_probs=193.5

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      ...++++.+++++|.+  +.+++++|++++.+ +..++++||+|++++++|+++.  +..+++..|.+++.++.+     
T Consensus        43 ~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~  120 (392)
T 2z9v_A           43 LYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEAI  120 (392)
T ss_dssp             HHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCCC
Confidence            5788999999999976  45556777899874 5557899999999999998763  234455678888888753     


Q ss_pred             CHHHHHhhh--CCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccccc
Q 016612          128 DLDEVASAI--GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (386)
Q Consensus       128 d~~~l~~~~--~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (386)
                      |++++++.+  ++++++|++++++||||.+.|+++|.++|+++|+++|+|++++.+... +....+.|++++|+||+++|
T Consensus       121 d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~  200 (392)
T 2z9v_A          121 DPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGA  200 (392)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCC
T ss_pred             CHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccC
Confidence            899999998  468999999999999999999999999999999999999999876543 22234789999999998877


Q ss_pred             CCCceEEEEEEcChhHHHHHHHhh-------------------h-hcCCCCChhhHHHHHhcCCc-----HHHHHHHHHH
Q 016612          205 HSDVMAGVLAVKGERLAKELYFLQ-------------------N-AEGSGLAPFDCWICLRGVKT-----MALRVEKQQD  259 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  259 (386)
                      +.|  .|++++++ .+.+.+....                   . ......+......+..+++.     +....++..+
T Consensus       201 ~~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  277 (392)
T 2z9v_A          201 PPG--LTMMGVSE-RAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHAL  277 (392)
T ss_dssp             CSC--CEEEEECH-HHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCc--eeEEEECH-HHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            777  49998874 4544443211                   0 00112222222222222222     2233444455


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc-eeccCCCCcccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMP  338 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~~~~G~~~~~~~~p  338 (386)
                      +.+.+.+.+++. .        +.-...     ......+.++++.++......++.+.+... |+.+.+|...      
T Consensus       278 ~~~~l~~~L~~~-g--------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~------  337 (392)
T 2z9v_A          278 TAKAMRAGVTAM-G--------LSVWAA-----SDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGE------  337 (392)
T ss_dssp             HHHHHHHHHHHT-T--------CCBSSS-----SGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGG------
T ss_pred             HHHHHHHHHHHc-C--------CeeccC-----CccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCC------
Confidence            555566666543 1        111100     000113567888875333356677777765 8877665531      


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEe-c----cCChHHHHHHHHHHHhcC
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISV-G----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~-~----~~~~~~~i~~l~~~l~~~  384 (386)
                                       ..++++|+|+ +    .++++++++.|++++++.
T Consensus       338 -----------------~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~  371 (392)
T 2z9v_A          338 -----------------TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA  371 (392)
T ss_dssp             -----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             -----------------CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence                             1256799995 4    377888888888888764

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.95  E-value=2.2e-27  Score=223.18  Aligned_cols=299  Identities=18%  Similarity=0.117  Sum_probs=184.7

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHhc----CCCC-EEEecCCCCCcHHHHHhhhcccCCcEEEEeCC
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAV-THLL----GTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~~----~~g~-~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
                      +..+++++++++++|.+  +.+++++|++|+.++ .+++    ++|| +|+++++.|+++...+..+ +..|.+++.++.
T Consensus        63 ~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~  141 (400)
T 3vax_A           63 RGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFEVDFLTP  141 (400)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCeEEEEcc
Confidence            46889999999999987  466667778999754 4455    7999 9999999999987666443 568999999987


Q ss_pred             C-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC-CCCCCccEEEecccc
Q 016612          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATK  200 (386)
Q Consensus       127 ~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~~~di~~~S~sK  200 (386)
                      +     |++++++++++++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.... .... .|++++|+||
T Consensus       142 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K  220 (400)
T 3vax_A          142 GPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHK  220 (400)
T ss_dssp             CTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGG
T ss_pred             CCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHH
Confidence            5     8999999999999999999999999999999999999999999999999998766432 2233 8999999999


Q ss_pred             ccccCCCceEEEEE-EcChhHH---HHHHHhh-------hhcCCCCChhhHHHHHhcCCc----HHHHHHHHHHHHHHHH
Q 016612          201 FIAGHSDVMAGVLA-VKGERLA---KELYFLQ-------NAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIA  265 (386)
Q Consensus       201 ~~~g~~g~~~G~i~-~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~  265 (386)
                      ++ |+.|  +|+++ ++++.+.   ..+....       .......+......+..+++.    +....++..++.+.+.
T Consensus       221 ~~-g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~  297 (400)
T 3vax_A          221 IG-APKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLL  297 (400)
T ss_dssp             GT-SCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             hC-CCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            65 6666  57777 7762211   0111111       011122333333333333322    2233333444444444


Q ss_pred             HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCC
Q 016612          266 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  345 (386)
Q Consensus       266 ~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~  345 (386)
                      +.++ .+              ++.+..+.....++++.+.+.+. ..+.+.+.+. .|+.+++|..+.....+       
T Consensus       298 ~~L~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~-~gi~v~~g~~~~~~~~~-------  353 (400)
T 3vax_A          298 AGLA-ST--------------SFQVNGDQDHVVPHILNLSFEDV-DAEAFLVTLK-DLVAVATGSASTSASFT-------  353 (400)
T ss_dssp             HHHT-TT--------------TCEECSCTTSBCTTEEEEECTTC-CHHHHHHHHH-HHHHHTTTTEEEEEEEC-------
T ss_pred             HhhC-CC--------------CEEEeCCcccCCCCEEEEEeCCC-CHHHHHHHHh-cCcEEEecccccCCCCC-------
Confidence            4444 22              22222111112346788877643 3667788888 89988888653321111       


Q ss_pred             CCHHHHHhcCCC----CCeEEEEe-c----cCChHHHHHHHHHHHhc
Q 016612          346 IPVEVRQARGLT----EDLVRISV-G----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       346 ~~~~~~~~~~~~----~~~iRis~-~----~~~~~~~i~~l~~~l~~  383 (386)
                       +.......|..    ++++||++ +    .++++++++.|++++++
T Consensus       354 -~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          354 -PSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             -CHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred             -ccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence             01111222333    48899999 6    47777777777777653

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.95  E-value=1.9e-26  Score=215.87  Aligned_cols=292  Identities=15%  Similarity=0.138  Sum_probs=190.7

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|... |.+ +++++.+++.+.+|.    + +.+++++|++++.+ +..++++||+|++++|.|+++.    ..++..
T Consensus        60 ~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~  135 (386)
T 1u08_A           60 ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYA----PAIALS  135 (386)
T ss_dssp             CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHT
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHc
Confidence            3467665 654 788888888777663    3 56666677799874 5557899999999999999886    445567


Q ss_pred             CcEEEEeCC------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          118 GVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       118 g~~~~~v~~------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      |.+++.++.      .|++++++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+.    
T Consensus       136 g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~  215 (386)
T 1u08_A          136 GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH  215 (386)
T ss_dssp             TCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC
T ss_pred             CCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCC
Confidence            888888875      3799999999889999999999999999985   789999999999999999999753221    


Q ss_pred             -CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHHHH
Q 016612          185 -RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVE  255 (386)
Q Consensus       185 -~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  255 (386)
                       ...    ..+.|+++.|+||++ +++|+|+|+++++ +.+.+.+...........+...+.++...++.    +....+
T Consensus       216 ~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  293 (386)
T 1u08_A          216 ASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPD  293 (386)
T ss_dssp             CCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHH
T ss_pred             cChhcccCccCcEEEEecchhhc-CCcccceEEEEcC-HHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHH
Confidence             111    236799999999999 4567899999987 55666565544333334444444444333321    222223


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhhcC-cceeccCCCCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTK-YFSITVSFGSVK  332 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~-~~gi~~~~G~~~  332 (386)
                      ...++.+.+.+.+++.               ++.+.  . ...+.++++.++..  ....++.+.+. ..|+.+.+|..+
T Consensus       294 ~~~~~~~~l~~~L~~~---------------g~~~~--~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f  355 (386)
T 1u08_A          294 FYRQKRDILVNALNES---------------RLEIL--P-CEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVF  355 (386)
T ss_dssp             HHHHHHHHHHHHTTSS---------------SCEEC--C-CCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHC---------------CCeec--C-CCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHh
Confidence            3333444444443322               11111  1 11256778877542  23456666554 568877766532


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          333 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      ..   .                ...++++|||++.  .++.++.+.+.|+
T Consensus       356 ~~---~----------------~~~~~~iRis~~~--~~~~i~~~~~~l~  384 (386)
T 1u08_A          356 CA---D----------------PFPHKLIRLCFAK--KESTLLAAAERLR  384 (386)
T ss_dssp             CS---S----------------CCCSCEEEEECCS--CHHHHHHHHHHHT
T ss_pred             CC---C----------------CCCCCEEEEEEcC--CHHHHHHHHHHHh
Confidence            10   0                0135789999984  3444444444443

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.95  E-value=4.1e-26  Score=220.08  Aligned_cols=295  Identities=16%  Similarity=0.128  Sum_probs=194.3

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcC-C----CceEEeCcHHHHHHHH-HHhcCCCC----EEEecCCCCCcHHHHHhhh
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDK-A----DRALCFTSGMAALAAV-THLLGTGE----EIVAGDDLYGGTDRLLSRV  113 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g-~----~~~i~~~~gt~al~~~-~~~~~~g~----~Vlv~~~~~~~~~~~~~~~  113 (386)
                      ...|+.. |.+ +++++.+++.+..| .    +++++++++++++..+ ..++++||    .|+++.|.|+.+.    ..
T Consensus       122 ~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~----~~  197 (498)
T 3ihj_A          122 LGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYS----AV  197 (498)
T ss_dssp             ------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHH----HH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHH----HH
Confidence            4568877 875 89999999998875 3    3566666667998754 55778875    9999999999886    44


Q ss_pred             cccCCcEEEEeCCC-------CHHHHHhhhCC-----CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCC
Q 016612          114 TPKTGVVVKRVNTC-------DLDEVASAIGP-----WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       114 ~~~~g~~~~~v~~~-------d~~~l~~~~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~  178 (386)
                      ++..|.+++.++.+       |+++|++.+++     ++++|++++|+||||.+++   +++|+++|+++|++||+||+|
T Consensus       198 ~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y  277 (498)
T 3ihj_A          198 ISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVY  277 (498)
T ss_dssp             HHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCc
Confidence            55678888888764       88999998875     6899999999999999986   778999999999999999999


Q ss_pred             CCCCccCC---CC--------------CCccEEEeccccccccCCCceEEEEEE--cChhHHHHHHHhhhhcCCCCChhh
Q 016612          179 MSPVLSRP---LE--------------LGADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFD  239 (386)
Q Consensus       179 ~~~~~~~~---~~--------------~~~di~~~S~sK~~~g~~g~~~G~i~~--~~~~~~~~~~~~~~~~~~~~~~~~  239 (386)
                      +...+...   ..              ....+++.|+||.+.|.+|+|+||++.  .++.+.+.+....... ...+...
T Consensus       278 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~  356 (498)
T 3ihj_A          278 QDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVR-LCPPVSG  356 (498)
T ss_dssp             TTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHS-CCCCHHH
T ss_pred             cccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhcc-CCCCHHH
Confidence            86544211   00              012478899999997777899999984  4566766665554432 3334444


Q ss_pred             HHHHHhcCCc-------H-------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE-
Q 016612          240 CWICLRGVKT-------M-------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-  304 (386)
Q Consensus       240 ~~~~~~~~~~-------~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-  304 (386)
                      +.++...+..       +       ....+.+.++.+.+.+.|++.+              ++.+.    ...++++.| 
T Consensus       357 q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~--------------g~~~~----~p~gg~~~~~  418 (498)
T 3ihj_A          357 QAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVP--------------GIHCN----PLQGAMYAFP  418 (498)
T ss_dssp             HHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTST--------------TEECC----CCCBSSEECC
T ss_pred             HHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CcEec----CCCeEEEEEE
Confidence            5444444421       1       2223445566666666666542              21111    223455555 


Q ss_pred             EeCCHH-----------hHHH--HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CC
Q 016612          305 LTGSLA-----------LSKH--VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--ED  369 (386)
Q Consensus       305 ~~~~~~-----------~~~~--l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~  369 (386)
                      .++.+.           ..+.  +.+.+...|+.+.+|..+..   +                 .+++++|++++.  ++
T Consensus       419 ~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~---~-----------------~~~~~~Ris~~~~~e~  478 (498)
T 3ihj_A          419 RIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQ---R-----------------EGTYHFRMTILPPVEK  478 (498)
T ss_dssp             EECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCC---C-----------------TTCCBEEEECCSCHHH
T ss_pred             eccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC---C-----------------CCCCEEEEEeCCCHHH
Confidence            343211           0122  34445556887777765321   0                 135679999963  67


Q ss_pred             hHHHHHHHHHHHhc
Q 016612          370 VNDLISDLDKALRT  383 (386)
Q Consensus       370 ~~~~i~~l~~~l~~  383 (386)
                      +++.+++|.+++++
T Consensus       479 l~~~i~~L~~~~~~  492 (498)
T 3ihj_A          479 LKTVLQKVKDFHIN  492 (498)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77888888887764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.95  E-value=6.1e-27  Score=222.19  Aligned_cols=296  Identities=15%  Similarity=0.087  Sum_probs=195.5

Q ss_pred             CccccCC-CCchHHHHHHHHHhhcCCC-ceE-EeCcHHHHH--H-HHHHhcC--C----------CCEEEecCCCCCcHH
Q 016612           46 PYDYTRS-GNPTRDALESLLAKLDKAD-RAL-CFTSGMAAL--A-AVTHLLG--T----------GEEIVAGDDLYGGTD  107 (386)
Q Consensus        46 ~~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i-~~~~gt~al--~-~~~~~~~--~----------g~~Vlv~~~~~~~~~  107 (386)
                      ...|... |.+   ++++.++++++.+ +.| +++++++++  . ++..+++  |          ||+|++++|+|+++.
T Consensus        71 ~~~Y~~~~g~~---~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~  147 (427)
T 3ppl_A           71 VRNYGGLDGIV---DIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHF  147 (427)
T ss_dssp             TTSSCCSSCCH---HHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHH
T ss_pred             hcCCCCCCCcH---HHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHH
Confidence            4566654 544   5556666666665 444 445556888  3 4455666  6          899999999999886


Q ss_pred             HHHhhhcccCCcEEEEeCCC----CHHHHHhhhC-CCceEEEEe-CCCCCCcccccHH---HHHHHH-HHcCCEEEEeCC
Q 016612          108 RLLSRVTPKTGVVVKRVNTC----DLDEVASAIG-PWTKLVWVE-SPTNPRQQICDIR---KIAEMA-HAHGALLLVDNS  177 (386)
Q Consensus       108 ~~~~~~~~~~g~~~~~v~~~----d~~~l~~~~~-~~~~~v~~~-~~~nptG~~~~l~---~i~~la-~~~~~~li~D~a  177 (386)
                          ..++..|.+++.++.+    |+++++++++ +++++|+++ +++||||.+.+.+   +|.++| +++|++||+||+
T Consensus       148 ----~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~  223 (427)
T 3ppl_A          148 ----SITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNA  223 (427)
T ss_dssp             ----HHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred             ----HHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECC
Confidence                4556788898888764    8999999995 789999876 8999999999865   888888 999999999999


Q ss_pred             CCCCCcc-------CC-------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHH
Q 016612          178 IMSPVLS-------RP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (386)
Q Consensus       178 ~~~~~~~-------~~-------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (386)
                      |+...+.       +.       ...+.+++++|+||++ ++ |+|+||++++ +.+.+.+...........+...+.++
T Consensus       224 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~-G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~  300 (427)
T 3ppl_A          224 YAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKIT-LA-GAGVSFFLTS-AENRKWYTGHAGIRGIGPNKVNQLAH  300 (427)
T ss_dssp             TTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTS-CT-TSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CcccccCCCCCCccchhhhhhccCCCCcEEEEechhhcc-Cc-CccEEEEEcC-HHHHHHHHHHhhcccCCCCHHHHHHH
Confidence            8753221       11       1346789999999993 44 7899999987 55666666665555566666666666


Q ss_pred             HhcCCcH-------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHH
Q 016612          244 LRGVKTM-------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  316 (386)
Q Consensus       244 ~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~  316 (386)
                      ...+...       ....+.+.++.+.+.+.+.+.          ++.+++..+.  . ...+.++++.++.. ....+.
T Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------l~~~~~~~~~--~-p~~g~~~~~~~~~~-~~~~~~  366 (427)
T 3ppl_A          301 ARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSR----------LAEYGVAQWT--V-PAGGYFISLDVVPG-TASRVA  366 (427)
T ss_dssp             HHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HGGGTCCEEC--C-CSBSSCEEEECSTT-CHHHHH
T ss_pred             HHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCceEEe--C-CCccEEEEEECCcc-hHHHHH
Confidence            5555441       122223333444444444431          0000011110  1 12367788888654 366777


Q ss_pred             hhcCcceeccCCCC-ccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          317 ETTKYFSITVSFGS-VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       317 ~~l~~~gi~~~~G~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      +.+...|+.+.+|+ ++..-                  ....++++|||++.   +++++.++.|.+++++
T Consensus       367 ~~l~~~gv~v~~~g~~~~~~------------------~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~  419 (427)
T 3ppl_A          367 ELAKEAGIALTGAGSSYPLR------------------QDPENKNLRLAPSLPPVEELEVAMDGVATCVLL  419 (427)
T ss_dssp             HHHHHTTEECCCTTTTSGGG------------------CCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEecCcCcCCCC------------------CCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            77878899888844 32100                  01136789999975   6677888888887764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.95  E-value=1.6e-26  Score=219.96  Aligned_cols=298  Identities=14%  Similarity=0.100  Sum_probs=201.4

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHHH-HHhc--CCCC--EEEecCCCCCcHHHHHhhhcc
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAAV-THLL--GTGE--EIVAGDDLYGGTDRLLSRVTP  115 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~~-~~~~--~~g~--~Vlv~~~~~~~~~~~~~~~~~  115 (386)
                      ..|... |.+ +++++.+++.+.+|.    ++.+++++|++++.++ ..++  ++||  +|++++|+|+++..    .++
T Consensus        76 ~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~----~~~  151 (437)
T 3g0t_A           76 SIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKL----QCR  151 (437)
T ss_dssp             GSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHH----HHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHH----HHH
Confidence            556665 554 677777777766553    3566666667999754 5566  8999  99999999998864    445


Q ss_pred             cCCcEEEEeCCC------CHHHHHhhh-CCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-
Q 016612          116 KTGVVVKRVNTC------DLDEVASAI-GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-  184 (386)
Q Consensus       116 ~~g~~~~~v~~~------d~~~l~~~~-~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-  184 (386)
                      ..|.+++.++.+      |++++++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+...+. 
T Consensus       152 ~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~  231 (437)
T 3g0t_A          152 ILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK  231 (437)
T ss_dssp             HHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS
T ss_pred             HcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC
Confidence            677888887753      789999999 688999999999999999986   778999999999999999999743221 


Q ss_pred             ------------CCC-CCCccEEEeccccccccCCCceEEEEEEcChhHHH-H-----------------HHHhhhhcCC
Q 016612          185 ------------RPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-E-----------------LYFLQNAEGS  233 (386)
Q Consensus       185 ------------~~~-~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~-~-----------------~~~~~~~~~~  233 (386)
                                  ... ..+.+++++|+||++ +++|+|+|++++++ .+.+ .                 +.........
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (437)
T 3g0t_A          232 DYSHPGEPLYQPSVANYTDNYILALSSSKAF-SYAGQRIGVLMISG-KLYEREYPDLEESFGRLRFGEALSSSALYALSS  309 (437)
T ss_dssp             CCCSTTSSCCCCCGGGTCSCEEEEEESTTTT-SCGGGCCEEEEECH-HHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHS
T ss_pred             CcCcccccchhhccCCCCCcEEEEEcCccCC-CCccceeEEEEECH-HHhhhhhhcccccccccchhHHHHHHHHhhhcC
Confidence                        111 246779999999999 55678999999974 4544 3                 3333333334


Q ss_pred             CCChhhHHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe
Q 016612          234 GLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  306 (386)
Q Consensus       234 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~  306 (386)
                      ..+...+.++...++.       +....+.+.++.+.+.+.+++.. + ....+.       .  ...+...+.++++.+
T Consensus       310 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~-------~--~~~~~~~~~~~~~~~  378 (437)
T 3g0t_A          310 GATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNG-F-NIVYDK-------D--GNEPLADGFYFTVGY  378 (437)
T ss_dssp             SSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTT-E-EESSCE-------E--TTEECCSSSEEEEEE
T ss_pred             CCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-EEeccc-------c--CCCCCceeEEEEEec
Confidence            4555555555443322       44555566666777777776541 1 000000       0  000112466778787


Q ss_pred             CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          307 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       307 ~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      ++ .....+.+.+...|+.+.+|..+.                     ...++++|||++.   ++++++++.|++++++
T Consensus       379 ~~-~~~~~l~~~L~~~gi~v~~~~~~~---------------------~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          379 KG-MDSSKLIEKFVRYGMCAITLKTTG---------------------SKRNEAMRICTSLLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             TT-CCHHHHHHHHHHTTEECEESTTTT---------------------CCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred             CC-CCHHHHHHHHHHcCeEEeeccccC---------------------CCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            62 235667777777788877665421                     0023679999973   7888888888887764

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=7.1e-27  Score=220.19  Aligned_cols=293  Identities=19%  Similarity=0.109  Sum_probs=195.1

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHHH-Hh---cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~~-~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      +...++++.+++++|.+  +.+++++|++++.++. ++   +++||+|++++++|+++...+....+..|.+++.++.+ 
T Consensus        69 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~  148 (406)
T 3cai_A           69 AVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI  148 (406)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc
Confidence            46888999999999986  4555666678887554 45   68999999999999988666555455578899988865 


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |++++++.+++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... +....+.|++++|+||+
T Consensus       149 ~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~  228 (406)
T 3cai_A          149 ETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAW  228 (406)
T ss_dssp             TTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGG
T ss_pred             ccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhh
Confidence                 899999999989999999999999999999999999999999999999999876552 22234789999999998


Q ss_pred             cccCCCceEE-EEEEcChhHHHHHHHhhh---------hcCCCCChhhHHHHHhcCCc-------------------HHH
Q 016612          202 IAGHSDVMAG-VLAVKGERLAKELYFLQN---------AEGSGLAPFDCWICLRGVKT-------------------MAL  252 (386)
Q Consensus       202 ~~g~~g~~~G-~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-------------------~~~  252 (386)
                      + |+.   +| ++++++ .+.+.+.....         ......+......+..+++.                   +..
T Consensus       229 ~-g~~---~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~  303 (406)
T 3cai_A          229 G-GPP---IGAMVFRDP-SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQS  303 (406)
T ss_dssp             T-SCS---CEEEEESCH-HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHH
T ss_pred             c-CCC---cCeEEEEeh-HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHH
Confidence            7 543   56 988864 45443322211         00112233222222111111                   233


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcc
Q 016612          253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVK  332 (386)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~  332 (386)
                      ..++..++.+.+.+.|++.+.              +.++.+ ....++++++.+++. ...++.+.+...|+.++.|...
T Consensus       304 ~~~~~~~~~~~l~~~L~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~L~~~gi~v~~g~~~  367 (406)
T 3cai_A          304 ADAYLNRVFDYLMVSLRSLPL--------------VMLIGR-PEAQIPVVSFAVHKV-PADRVVQRLADNGILAIANTGS  367 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTT--------------EEECCC-CSSBCSEEEEEETTB-CHHHHHHHHHHTTEECEECCSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCC--------------eEEcCC-ccccCCEEEEEECCc-CHHHHHHHHHHCCcEEecCChH
Confidence            334444555555566654332              111111 012356788887642 2556667776678887766511


Q ss_pred             ccccccccccCCCCCHHHHHhcCC--CCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          333 SLISMPCFMSHASIPVEVRQARGL--TEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~--~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ..                ...++.  .++++|+|++....++.++.+.++|+++
T Consensus       368 ~~----------------~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          368 RV----------------LDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL  405 (406)
T ss_dssp             HH----------------HHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             HH----------------HHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence            10                001122  2478999999766677777777777653

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.95  E-value=1.1e-26  Score=220.41  Aligned_cols=297  Identities=14%  Similarity=0.140  Sum_probs=194.6

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcC---CC--ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDK---AD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g---~~--~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ..|... |.+ +++++.+++.+.+|   .+  +.+++++|++++. ++.+++++||+|++++|+|+++.    ..++..|
T Consensus        79 ~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g  154 (425)
T 1vp4_A           79 LQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI----NAFRQYL  154 (425)
T ss_dssp             TSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTT
T ss_pred             cCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcC
Confidence            456655 554 67777777766657   33  4445555568887 45567899999999999999886    4445678


Q ss_pred             cEEEEeCCC----CHHHHHhhhCC--------CceEE-EEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCC
Q 016612          119 VVVKRVNTC----DLDEVASAIGP--------WTKLV-WVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (386)
Q Consensus       119 ~~~~~v~~~----d~~~l~~~~~~--------~~~~v-~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~  182 (386)
                      .+++.++.+    |++++++.+++        ++++| ++++|+||||.+.+   +++|.++|+++|+++|+||+|+...
T Consensus       155 ~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  234 (425)
T 1vp4_A          155 ANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALR  234 (425)
T ss_dssp             CEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCB
T ss_pred             CEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence            888888763    88999988865        78888 47899999999986   6789999999999999999997643


Q ss_pred             cc-----CC---CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----
Q 016612          183 LS-----RP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----  249 (386)
Q Consensus       183 ~~-----~~---~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  249 (386)
                      +.     ..   ...+.++++.|+||+++  +|+|+|+++++ +++.+.+.........+.+...++++...++.     
T Consensus       235 ~~g~~~~~~~~~~~~~~~i~~~s~sK~~~--~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  311 (425)
T 1vp4_A          235 YEGETVDPIFKIGGPERVVLLNTFSKVLA--PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLE  311 (425)
T ss_dssp             CSSCCCCCHHHHHCTTTEEEEEESTTTTC--GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHH
T ss_pred             CCCCCCcCHHHhCCCCCEEEEeccccccc--cccceEEEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHH
Confidence            21     11   11256899999999995  58999999987 55666555444333233455555555443322     


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhC-CCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccC
Q 016612          250 -MALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  327 (386)
Q Consensus       250 -~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~  327 (386)
                       +....+.+.++.+.+.+.+++. +.           .+++.+.  . +..+.++++.++......++.+.+...|+.+.
T Consensus       312 ~~~~~~~~~~~~~~~l~~~L~~~~~~-----------~~g~~~~--~-~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~  377 (425)
T 1vp4_A          312 QLKPTIELYRRKRTVMLNALEEYFSD-----------IPGVKWV--K-SEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYV  377 (425)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHSTT-----------STTCEEC--C-CSBSSEEEEECCTTCCTTTTHHHHHHHTEECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCC-----------CCceEEe--c-CCccEEEEEEcCCCCCHHHHHHHHHHCCCEEE
Confidence             1223334445556666666542 10           0011111  0 12356788887532223445555555577777


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      +|..+...                   +..++++|||++.   ++++++++.|++++++
T Consensus       378 ~g~~f~~~-------------------~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~  417 (425)
T 1vp4_A          378 PGRVFKVY-------------------DEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE  417 (425)
T ss_dssp             EGGGGCTT-------------------CCCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhcCC-------------------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            66542100                   1135789999974   6788888888887764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.95  E-value=2.8e-26  Score=216.51  Aligned_cols=303  Identities=17%  Similarity=0.135  Sum_probs=193.5

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|... |.+ +++++.+++.+.+|.    + +.+++++|++++.+ +..++++||+|++++|+|+++.    ..++..
T Consensus        55 ~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~----~~~~~~  130 (411)
T 2o0r_A           55 VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYS----PVVAMA  130 (411)
T ss_dssp             CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHH----HHHHHc
Confidence            4467665 554 788888888877663    2 45555666799874 5557899999999999999986    344567


Q ss_pred             CcEEEEeCC--------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc--
Q 016612          118 GVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--  184 (386)
Q Consensus       118 g~~~~~v~~--------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~--  184 (386)
                      |.+++.++.        .|++++++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.+.+.  
T Consensus       131 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~  210 (411)
T 2o0r_A          131 GAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA  210 (411)
T ss_dssp             TCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred             CCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            888888775        3899999999889999999999999999986   589999999999999999999754321  


Q ss_pred             ---CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----HHHH
Q 016612          185 ---RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALR  253 (386)
Q Consensus       185 ---~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  253 (386)
                         ...    ..+.|+++.|+||++ |++|+|+|+++++ +++.+.+...........+...+.++...++.    +...
T Consensus       211 ~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  288 (411)
T 2o0r_A          211 RHLPLAGFDGMAERTITISSAAKMF-NCTGWKIGWACGP-AELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAAL  288 (411)
T ss_dssp             CCCCGGGSTTTGGGEEEEEEHHHHT-TCTTTCEEEEECC-HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHH
T ss_pred             CCcChhhccCCCCCEEEEeechhhc-CCccceEEEEeeC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHH
Confidence               111    136799999999998 4567999999986 55666555444332223333333333333321    2223


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhhcC-cceeccCCCC
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTK-YFSITVSFGS  330 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~-~~gi~~~~G~  330 (386)
                      .+...++.+.+.+.+++..         +      .+.  . ...+.++++.++..  ....++.+.+. ..|+.+.+|.
T Consensus       289 ~~~~~~~~~~l~~~L~~~g---------~------~~~--~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~  350 (411)
T 2o0r_A          289 RNSLRARRDRLAAGLTEIG---------F------AVH--D-SYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMS  350 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---------C------EEC--C-CCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGG
T ss_pred             HHHHHHHHHHHHHHHHHcC---------C------Eec--C-CCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChh
Confidence            3344455555555555431         1      111  0 11244677777531  12455666553 5688777665


Q ss_pred             cccccc-ccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          331 VKSLIS-MPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       331 ~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      .+..-. .|. +.          .....++++|||++.  ++++++++.|++++++
T Consensus       351 ~f~~~~~~~~-~~----------~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~~  395 (411)
T 2o0r_A          351 AFCDPAAGQA-SQ----------QADVWNHLVRFTFCKRDDTLDEAIRRLSVLAER  395 (411)
T ss_dssp             GGSCCC-------------------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC-
T ss_pred             hhCCCccccc-cc----------cccCCCCeEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            421000 000 00          000124679999974  5566667777666544

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.95  E-value=4.2e-27  Score=218.95  Aligned_cols=287  Identities=16%  Similarity=0.157  Sum_probs=195.0

Q ss_pred             CchHHHHHHH-HHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC--CC--
Q 016612           54 NPTRDALESL-LAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN--TC--  127 (386)
Q Consensus        54 ~~~~~~l~~~-l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~--~~--  127 (386)
                      .+...++++. +++++|.+..+++++|++|+. ++.+++++||+|++++|+|+++...    ++..|.+++.++  .+  
T Consensus        52 ~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~  127 (371)
T 2e7j_A           52 TPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPD  127 (371)
T ss_dssp             -CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTT
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHH----HHHcCCeEEEeecccCCC
Confidence            3578899999 999999884444455579987 4555789999999999999988643    567889999998  54  


Q ss_pred             ---CHHHHHhhhC-----CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecc
Q 016612          128 ---DLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (386)
Q Consensus       128 ---d~~~l~~~~~-----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~  198 (386)
                         |++++++.++     +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... +....+.|++++|+
T Consensus       128 ~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  207 (371)
T 2e7j_A          128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSG  207 (371)
T ss_dssp             CCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEH
T ss_pred             CCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecC
Confidence               8999999987     78999999999999999999999999999999999999999876653 22334789999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHH-HHHhhh--hc-----CCCCChhhHHHHHhcCCcHH-HHHHHH--HHHHHHHHHH
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKE-LYFLQN--AE-----GSGLAPFDCWICLRGVKTMA-LRVEKQ--QDNAQKIAEF  267 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~l~~~  267 (386)
                      ||+++++.  ++|+++++++ +.+. +.....  ..     ....+..+.+.+..+++.+. ...++.  .++.+.+.+.
T Consensus       208 sK~~~~~~--~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  284 (371)
T 2e7j_A          208 HKSMAASG--PIGVMGMKEE-WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAE  284 (371)
T ss_dssp             HHHSSCCS--SCEEEEECTT-TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred             CcCCCCCC--CcEEEEEech-hhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987654  6899999865 4333 322222  11     12233333333333333222 223334  4556666666


Q ss_pred             HhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCC
Q 016612          268 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  347 (386)
Q Consensus       268 l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~  347 (386)
                      |++. .+ ....              .....++++++.++   ...++.+.+...|+.+.+ ....   .+         
T Consensus       285 L~~~-~~-~~~~--------------~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~-~~~~---~~---------  332 (371)
T 2e7j_A          285 MEKL-GI-KQLG--------------DNPHNHDLMFFHAE---VLYEISKKAKGGRFFLYR-ELKS---RK---------  332 (371)
T ss_dssp             HHHT-TC-EEES--------------SSSCCSSEEEEECH---HHHHHHHHSSSGGGHHHH-HHHH---TT---------
T ss_pred             HHHc-Cc-EEec--------------CCCccCceEEEECC---CHHHHHHHHHHCCEEEEe-cccc---cc---------
Confidence            6653 11 1110              00113678888875   467788888888887653 1100   00         


Q ss_pred             HHHHHhcCCCCCeEE-EEecc-----CChHHHHHHHHHHHhcC
Q 016612          348 VEVRQARGLTEDLVR-ISVGI-----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       348 ~~~~~~~~~~~~~iR-is~~~-----~~~~~~i~~l~~~l~~~  384 (386)
                           ..+..++++| ++++.     ++++++++.|++++++.
T Consensus       333 -----~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~  370 (371)
T 2e7j_A          333 -----IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY  370 (371)
T ss_dssp             -----EECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             -----ccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence                 0022357799 99874     56677777777777654

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.95  E-value=3.5e-26  Score=215.74  Aligned_cols=252  Identities=18%  Similarity=0.189  Sum_probs=170.8

Q ss_pred             cceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC-----CceEEeCcHHHH
Q 016612           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA-----DRALCFTSGMAA   82 (386)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~-----~~~i~~~~gt~a   82 (386)
                      +...++++.+...++ .++.+.++...   .+.......|... |.+ +++++.+++.+.+|.     ++.+++++|+++
T Consensus        22 ~~~~i~l~~~~~~~~-~~~~v~~a~~~---~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a   97 (410)
T 3e2y_A           22 DPSVVNLGQGFPDIS-PPSYVKEELSK---AAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS   97 (410)
T ss_dssp             STTSEECSSCCCCSC-CCHHHHHHHHH---HHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred             CCCeEEecCCCCCCC-CCHHHHHHHHH---HHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence            356788885544343 22222222111   1111223467665 654 788888888776553     345566666799


Q ss_pred             HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----------------CHHHHHhhhCCCceEEEE
Q 016612           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------------DLDEVASAIGPWTKLVWV  145 (386)
Q Consensus        83 l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----------------d~~~l~~~~~~~~~~v~~  145 (386)
                      +. ++..++++||+|++++|.|+++.    ..++..|.+++.++..                |++++++++++++++|++
T Consensus        98 ~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~  173 (410)
T 3e2y_A           98 LFNSIQGLVDPGDEVIIMVPFYDCYE----PMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIIL  173 (410)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEE
T ss_pred             HHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEE
Confidence            87 45567899999999999999886    4445678888877653                889999999989999999


Q ss_pred             eCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCC----CCCccEEEeccccccccCCCceEEEE
Q 016612          146 ESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVL  213 (386)
Q Consensus       146 ~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~----~~~~di~~~S~sK~~~g~~g~~~G~i  213 (386)
                      ++|+||||.+.   ++++|.++|+++|+++|+|++|+...+.     ...    ..+.++++.|+||++ |++|+|+|++
T Consensus       174 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~  252 (410)
T 3e2y_A          174 NTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTF-SVTGWKLGWS  252 (410)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHS-SCGGGCCEEE
T ss_pred             eCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhc-CCCCceEEEE
Confidence            99999999996   5899999999999999999999743221     111    124569999999999 5557899999


Q ss_pred             EEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHHHhhC
Q 016612          214 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----------KTMALRVEKQQDNAQKIAEFLASH  271 (386)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~  271 (386)
                      +++ +++.+.+...........+...+.++...+           ..+....+.+.++.+.+.+.+++.
T Consensus       253 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  320 (410)
T 3e2y_A          253 IGP-AHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV  320 (410)
T ss_dssp             ECC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEC-HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            986 456555655554444455555555444332           223444555566666677777654

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.95  E-value=1.4e-26  Score=217.30  Aligned_cols=282  Identities=17%  Similarity=0.177  Sum_probs=194.6

Q ss_pred             chHHHHHHHHHhhcCCC-c--eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCc--HHHHHhhhcccCCcEEEEeCC--
Q 016612           55 PTRDALESLLAKLDKAD-R--ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGG--TDRLLSRVTPKTGVVVKRVNT--  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~--~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~--~~~~~~~~~~~~g~~~~~v~~--  126 (386)
                      ++++++++++++++|.+ +  .+++++|++|+. ++..++++||+|++++|+|++  +.    ..++..|.+++.++.  
T Consensus        67 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~~~g~~~~~v~~~~  142 (393)
T 1vjo_A           67 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLV----DMAGRYGADVRTISKPW  142 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHH----HHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHH----HHHHHcCCceEEEecCC
Confidence            47899999999999986 4  455566679987 556678999999999999987  43    555678889988885  


Q ss_pred             ---CCHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          127 ---CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       127 ---~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                         .|++++++.+++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... +....++|++++|+||+
T Consensus       143 ~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~  222 (393)
T 1vjo_A          143 GEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKG  222 (393)
T ss_dssp             TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSST
T ss_pred             CCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCccc
Confidence               489999999987 8999999999999999999999999999999999999999866432 22234789999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHh----hh---------------hcCC-CCChhhHHHHHhcCCc-----HHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFL----QN---------------AEGS-GLAPFDCWICLRGVKT-----MALRVEK  256 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~----~~---------------~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~  256 (386)
                      ++++.  ++|+++++++ +.+.+...    ..               .... ..+...+.++..+++.     +....++
T Consensus       223 l~~~~--~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~  299 (393)
T 1vjo_A          223 LGCSP--GASPFTMSSR-AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQR  299 (393)
T ss_dssp             TCSCS--SCEEEEECHH-HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccCCC--ceEEEEECHH-HHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            97765  4799998754 54444211    00               1111 3444444444444432     2234455


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc-eeccCCCCccccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLI  335 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~~~~G~~~~~~  335 (386)
                      ..++.+.+.+.|++. .        ++-...      .....+.++++.++......++.+.+... |+.+.+|..+.  
T Consensus       300 ~~~~~~~l~~~L~~~-g--------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--  362 (393)
T 1vjo_A          300 HQKNVEYLWERLEDI-G--------LSLHVE------KEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGEL--  362 (393)
T ss_dssp             HHHHHHHHHHHHHHT-T--------CCBSSC------GGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG--
T ss_pred             HHHHHHHHHHHHHHc-C--------CcccCC------ccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCcccc--
Confidence            556666666666653 1        111110      00013467788775333466777777766 88877765311  


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEe-cc----CChHHHHHHHHHHH
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISV-GI----EDVNDLISDLDKAL  381 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~~----~~~~~~i~~l~~~l  381 (386)
                                           .++++|||+ +.    ++++++++.|++++
T Consensus       363 ---------------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          363 ---------------------AGKVWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             ---------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             ---------------------CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence                                 256799994 43    34677777777765

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.95  E-value=1.1e-26  Score=217.88  Aligned_cols=286  Identities=14%  Similarity=0.155  Sum_probs=194.0

Q ss_pred             chHHHHHHHHHhhcCCCc--eE-EeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC----
Q 016612           55 PTRDALESLLAKLDKADR--AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~--~i-~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----  126 (386)
                      +...++++++++++|.+.  .+ ++++|++++. ++..++++||+|++++|+|+++.  +...++..|.+++.++.    
T Consensus        52 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  129 (393)
T 2huf_A           52 KIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVVKSKVGQ  129 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEEeCCCCC
Confidence            468899999999999862  45 5567779987 45557899999999999998752  23455667889888875    


Q ss_pred             -CCHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          127 -CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       127 -~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                       .|++++++.+++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... +....++|++++|+||+++
T Consensus       130 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~  209 (393)
T 2huf_A          130 SLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLG  209 (393)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTC
T ss_pred             CCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccc
Confidence             389999999987 8999999999999999999999999999999999999998866543 2234578999999999987


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhh----h-h---------c--------C-CCCChhhHHHHHhcCCc-----HHHHHH
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQ----N-A---------E--------G-SGLAPFDCWICLRGVKT-----MALRVE  255 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~----~-~---------~--------~-~~~~~~~~~~~~~~~~~-----~~~~~~  255 (386)
                      |+.|+  |+++++ +++.+.+....    . .         .        . ...+......+..+++.     +....+
T Consensus       210 g~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  286 (393)
T 2huf_A          210 APPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIA  286 (393)
T ss_dssp             CCSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cCCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            77774  898887 55555544320    0 0         0        0 12222222222222221     233445


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc-ceeccCCCCcccc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSL  334 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~~~~G~~~~~  334 (386)
                      +..++.+.+.+.|++. .        +.      ++.+.....+.++++.++......++.+.+.. .|+.+++|...  
T Consensus       287 ~~~~~~~~l~~~L~~~-g--------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~--  349 (393)
T 2huf_A          287 RHEDCAKRLYRGLQDA-G--------FE------LYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGP--  349 (393)
T ss_dssp             HHHHHHHHHHHHHHHT-T--------CC------BSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGG--
T ss_pred             HHHHHHHHHHHHHHHc-C--------Ce------eccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCccc--
Confidence            5556666666666653 1        11      11000001234777877533235567777654 48877766531  


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEe-cc----CChHHHHHHHHHHHhc
Q 016612          335 ISMPCFMSHASIPVEVRQARGLTEDLVRISV-GI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       335 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~~----~~~~~~i~~l~~~l~~  383 (386)
                                           ..++++||++ +.    ++++++++.|++++++
T Consensus       350 ---------------------~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~  382 (393)
T 2huf_A          350 ---------------------TAGQVFRIGLMGQNATTERVDRVLQVFQEAVAA  382 (393)
T ss_dssp             ---------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence                                 0256799999 52    4588888888888765

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.95  E-value=2.2e-26  Score=218.68  Aligned_cols=324  Identities=14%  Similarity=0.126  Sum_probs=197.8

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCC-CCCCCccccCC-CCc-hHHHHHHHHHhhcCCC-c-eEEeCcHHHHHHHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSA-TENGPYDYTRS-GNP-TRDALESLLAKLDKAD-R-ALCFTSGMAALAAV   86 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-~-~i~~~~gt~al~~~   86 (386)
                      .+++++ .+++.-..++.+.++......+. ...+...|... |.+ +++++.+++.+.++.+ + .++++++++++.++
T Consensus        57 ~~i~l~-~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l  135 (432)
T 3ei9_A           57 QVISLG-IGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL  135 (432)
T ss_dssp             CCEECS-SCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH
T ss_pred             CeEEcc-CCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHH
Confidence            578888 44444334444444322111111 11334567655 554 6666666665434544 4 44555556888877


Q ss_pred             HHhcCCCCEEEecCCCCCcHHHHHhhhcccCC---------cEEEEeCCCCHH----HHHhhhCCCceEEEEeCCCCCCc
Q 016612           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLD----EVASAIGPWTKLVWVESPTNPRQ  153 (386)
Q Consensus        87 ~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~d~~----~l~~~~~~~~~~v~~~~~~nptG  153 (386)
                      .+++++||.|++++|.|+++...+.. ....+         .+++.++.++..    ++++  .+++++|++++|+||||
T Consensus       136 ~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~v~l~~p~NPtG  212 (432)
T 3ei9_A          136 QVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST--VGRTDIIFFCSPNNPTG  212 (432)
T ss_dssp             HHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG--CCCCSEEEEESSCTTTC
T ss_pred             HHHcCCCCEEEEeCCCCHHHHHHHHH-cCCcccccccccccCceEEeccCcccCCcCChhh--CCCCCEEEEeCCCCCCC
Confidence            77899999999999999998765432 22222         245555543211    2222  36789999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----CCC----CCCccEEEeccccccccCCCceEEEEEEcChh---
Q 016612          154 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGER---  219 (386)
Q Consensus       154 ~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~---  219 (386)
                      .+.+   +++|+++|+++|+++|+||+|+.....    ...    ..+.++++.|+||++ |.+|+|+|+++++++.   
T Consensus       213 ~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~r~G~~~~~~~~~~~  291 (432)
T 3ei9_A          213 AAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYA-GFTGVRLGWTVIPKKLLYS  291 (432)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHH-CTTTTCCEEEECCTTCBCT
T ss_pred             CCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhcc-CCcccceEEEEEChHHhhc
Confidence            9985   777888899999999999999743221    111    124679999999999 5568999999998665   


Q ss_pred             ----HHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhh
Q 016612          220 ----LAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  290 (386)
Q Consensus       220 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i  290 (386)
                          +.+.+.........+.+...+.++...+..     +....+.+.++.+.+.+.|++..         +.      +
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~------~  356 (432)
T 3ei9_A          292 DGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG---------YD------V  356 (432)
T ss_dssp             TSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CC------E
T ss_pred             chHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC---------ce------e
Confidence                145454444444455666666665555542     23344555566666666666541         11      1


Q ss_pred             hhhccCCCCceEEEEeCCHHhHHHHHhhcC-cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--
Q 016612          291 HYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  367 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--  367 (386)
                      .   ....+.++++.+++.. ...+.+.+. ..|+.+.+|..+.    +                 .+++++|||+..  
T Consensus       357 ~---~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gv~v~~g~~f~----~-----------------~~~~~iRis~~~~~  411 (432)
T 3ei9_A          357 Y---GGKNAPYVWVHFPNQS-SWDVFAEILEKTHVVTTPGSGFG----P-----------------GGEGFVRVSAFGHR  411 (432)
T ss_dssp             E---ECSSSSEEEEECTTSC-HHHHHHHHHHHHCEECEEGGGGC----G-----------------GGTTEEEEECCSCH
T ss_pred             c---CCCcceEEEEECCCCC-HHHHHHHHHHHCCEEEeCchHhC----C-----------------CCCCEEEEEecCCH
Confidence            1   0123567888886322 344444443 3478777766422    0                 136789999853  


Q ss_pred             CChHHHHHHHHHH
Q 016612          368 EDVNDLISDLDKA  380 (386)
Q Consensus       368 ~~~~~~i~~l~~~  380 (386)
                      +++++.+++|++-
T Consensus       412 e~l~~~l~rl~~~  424 (432)
T 3ei9_A          412 ENILEACRRFKQL  424 (432)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5666666666543

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.95  E-value=8.2e-27  Score=215.42  Aligned_cols=313  Identities=16%  Similarity=0.159  Sum_probs=207.4

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHHHH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH   88 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~~~   88 (386)
                      ..+++++.+...++ .++.+.++  ... ..  .....|...   ...++++.+++++|.+  +.+++++|++++.+++.
T Consensus        15 ~~~id~~~~~~~~~-~~~~v~~a--~~~-~~--~~~~~y~~~---~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~   85 (350)
T 3fkd_A           15 SEIVNFSTTVWTDG-DKDHLEKH--LVE-NL--NCIRHYPEP---DAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQ   85 (350)
T ss_dssp             -CCEECSCCSCCCS-CCHHHHHH--HHH-TG--GGGGSCCCT---TCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHH
T ss_pred             ccEEEccCCCCCCC-CCHHHHHH--HHH-hH--hHHhcCCCC---cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            45788885555566 23333322  111 11  122334332   2268889999998876  45555666699986655


Q ss_pred             hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-CCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHH
Q 016612           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (386)
Q Consensus        89 ~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~  167 (386)
                      .+. ||+|++++|+|.++.    ..++..|.+++.++. ++.+.+..   +++++|++++|+||||.+.|+++|.++++.
T Consensus        86 ~l~-gd~Vi~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~  157 (350)
T 3fkd_A           86 AFR-GSRSLIAIPSFAEYE----DACRMYEHEVCFYPSNEDIGEADF---SNMDFCWLCNPNNPDGRLLQRTEILRLLND  157 (350)
T ss_dssp             HTT-TCEEEEEESCCHHHH----HHHHHTTCEEEEEETTSCGGGSCC---TTCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             HHC-CCEEEEeCCCcHHHH----HHHHHcCCeEEEEecCCccccCcc---CCCCEEEEeCCCCCcCCCCCHHHHHHHHHh
Confidence            544 999999999998885    455678999999988 54333321   689999999999999999999999999988


Q ss_pred             cC-CEEEEeCCCCCCCccC------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhH
Q 016612          168 HG-ALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (386)
Q Consensus       168 ~~-~~li~D~a~~~~~~~~------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (386)
                      ++ .++|+|++|+......      ....+.+++++|+||++ +.+|+|+|+++++ +++.+.+......  ...+...+
T Consensus       158 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~  233 (350)
T 3fkd_A          158 HPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAY-GIPGLRIGYIVAN-KDFMKRVAAFSTP--WAVNALAI  233 (350)
T ss_dssp             CTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHH-SCGGGCCEEEECC-HHHHHHHHTTCCT--TCSCHHHH
T ss_pred             CCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhc-cCcchheEeEEeC-HHHHHHHHHhCCC--CCCCHHHH
Confidence            75 7999999987433211      11335679999999999 5557899999984 6666655544332  34555555


Q ss_pred             HHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHh
Q 016612          241 WICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  317 (386)
Q Consensus       241 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~  317 (386)
                      .++...++.   +..+.++..++.+.+.+.+++.+.+              .++    +..+.++++.++.. ...++.+
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--------------~~~----~~~~~~~~~~~~~~-~~~~l~~  294 (350)
T 3fkd_A          234 EAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGV--------------EVH----PSGTTFFLLRLKKG-TAAELKK  294 (350)
T ss_dssp             HHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTE--------------EEC----CCSSSEEEEEESSS-CHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------------EEC----CCCCcEEEEECCCC-CHHHHHH
Confidence            554333221   2223333446677777777765321              111    23467777888654 4667777


Q ss_pred             hcCc-ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhcC
Q 016612          318 TTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRTG  384 (386)
Q Consensus       318 ~l~~-~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~~  384 (386)
                      .+.. .|+.+++|..+.                     +..++++|||++. ++++++++.|++.+++.
T Consensus       295 ~L~~~~gi~v~~g~~f~---------------------~~~~~~iRis~~~~~~~~~l~~al~~~~~~~  342 (350)
T 3fkd_A          295 YMLEEYNMLIRDASNFR---------------------GLDESYVRITTQRPAQNQLFIKALETFLEKY  342 (350)
T ss_dssp             HHHHTTCEECEECTTST---------------------TCCTTEEEEECCCHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHCCEEEEeCccCC---------------------CCCCCEEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence            7777 899888776531                     1246789999985 66788999998887653

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.95  E-value=4.7e-27  Score=220.23  Aligned_cols=288  Identities=15%  Similarity=0.178  Sum_probs=197.7

Q ss_pred             chHHHHHHHHHhhcCCC--c-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +...++++++++++|.+  + .+++++|++++. ++..++++||+|+++.+.|.+..  +...++..|.+++.++.+   
T Consensus        56 ~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~  133 (393)
T 3kgw_A           56 QIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPGE  133 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCC
Confidence            46788999999999876  2 455677789987 55668999999999988775331  235566788998888753   


Q ss_pred             --CHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 --d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                        |++++++.+++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... +....+.|+++.|+||+++
T Consensus       134 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~  213 (393)
T 3kgw_A          134 HYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLN  213 (393)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTC
T ss_pred             CCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCccccc
Confidence              89999999987 8999999999999999999999999999999999999999866543 2344578999999999887


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhhhh-----------------------cCCCCChhhHHHHHhcCCc-----HHHHHH
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQNA-----------------------EGSGLAPFDCWICLRGVKT-----MALRVE  255 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~  255 (386)
                      |+.|  +|++++++ ++.+.+......                       .....+......+..+++.     +....+
T Consensus       214 ~~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  290 (393)
T 3kgw_A          214 APPG--ISLISFND-KAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWR  290 (393)
T ss_dssp             CCSS--CEEEEECH-HHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCc--eeEEEECH-HHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            7776  68998874 454444322110                       0112233333333232221     234445


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc-eeccCCCCcccc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSL  334 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~~~~G~~~~~  334 (386)
                      +..++.+.+.+.+++..         +.-...     ......+.++++.++......++.+.+... |+.+.+|...  
T Consensus       291 ~~~~~~~~l~~~L~~~g---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--  354 (393)
T 3kgw_A          291 RHREATAHLHKHLQEMG---------LKFFVK-----DPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGP--  354 (393)
T ss_dssp             HHHHHHHHHHHHHHHTT---------CCBSSS-----SGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGG--
T ss_pred             HHHHHHHHHHHHHHHcC---------CeeccC-----ChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCccc--
Confidence            55666666666666541         111100     000112455667775444466777777666 8887776531  


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEe-c----cCChHHHHHHHHHHHhcC
Q 016612          335 ISMPCFMSHASIPVEVRQARGLTEDLVRISV-G----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       335 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~----~~~~~~~i~~l~~~l~~~  384 (386)
                                           ..++++|+++ +    .++++++++.|++++++.
T Consensus       355 ---------------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~  388 (393)
T 3kgw_A          355 ---------------------TEERVLRIGLLGYNATTENVDRVAEALREALQHC  388 (393)
T ss_dssp             ---------------------GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred             ---------------------CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence                                 1356899998 4    478889999999988764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.95  E-value=2.4e-26  Score=214.65  Aligned_cols=301  Identities=17%  Similarity=0.132  Sum_probs=194.0

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHHhc----CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~~~----~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      +...++++++++++|.+  +.+++++|++|+.+ +.++.    ++||+|+++++.|+++...+. .++..|.+++.++.+
T Consensus        43 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~  121 (382)
T 4eb5_A           43 EAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPVG  121 (382)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEEEECBC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEEEeccC
Confidence            46888999999999986  45666677899874 45555    899999999999998866553 344579999998863


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |++++++.+++++++|++++++||||.+.|+++|.++|+++|++ |+|++|+.+... +....+.|++++|+||+
T Consensus       122 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~  200 (382)
T 4eb5_A          122 KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDI  200 (382)
T ss_dssp             TTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGG
T ss_pred             CCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHh
Confidence                 89999999998999999999999999999999999999999999 999999865442 11223689999999998


Q ss_pred             cccCCCceEEEEEEcChh-HHHHHHH---hhhhcCCCCChhhHHHHHhcCCc----HHHHHHHHHHHHHHHHHHHhhCCC
Q 016612          202 IAGHSDVMAGVLAVKGER-LAKELYF---LQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      + |+.|  +|+++++++. +......   .........+......+..+++.    +....++..++.+.+.+.|++.+ 
T Consensus       201 ~-g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-  276 (382)
T 4eb5_A          201 Y-GPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIE-  276 (382)
T ss_dssp             T-CCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST-
T ss_pred             c-CCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCC-
Confidence            6 6666  5888887652 2110000   00111112233333332222222    22233344444555555554432 


Q ss_pred             cceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          274 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       274 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                                   +..+..+.....++++++.+++. ...++.+.+...|+.+++|..+...    .    ..+......
T Consensus       277 -------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~----~----~~~~~~~~~  334 (382)
T 4eb5_A          277 -------------ESYLNGHPEKRLPNNVNVRFSYI-EGESIVLSLDMAGIQASTGSACSSK----T----LQPSHVLMA  334 (382)
T ss_dssp             -------------TEEECSCSSSBCTTEEEEEETTS-CHHHHHHHHHHHTCBCBCCCGGGTS----S----CCCCHHHHH
T ss_pred             -------------CeEEeCCcccCCCCEEEEEeCCc-CHHHHHHHHHHCCEEEeccccccCC----C----CcccHHHHH
Confidence                         22211110011256788887632 3556777777778888877642211    0    001111222


Q ss_pred             cCCC----CCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          354 RGLT----EDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       354 ~~~~----~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                      +|..    ++++||+++.    ++++++++.|++++++
T Consensus       335 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (382)
T 4eb5_A          335 CGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             TTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            3332    5789999973    6777777777777654

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.95  E-value=8.4e-26  Score=210.16  Aligned_cols=282  Identities=13%  Similarity=0.160  Sum_probs=191.0

Q ss_pred             ccccCC-CCchHHHHHHHHHhhcC--CC-ceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           47 YDYTRS-GNPTRDALESLLAKLDK--AD-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        47 ~~y~~~-g~~~~~~l~~~l~~~~g--~~-~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      ..|... +..+++++.+++.+.+|  .+ +.+++++| ++++. ++.+++++||+|++++|+|+++.    ..++..|.+
T Consensus        64 ~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~----~~~~~~g~~  139 (369)
T 3cq5_A           64 NRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHP----ILAKGTHTE  139 (369)
T ss_dssp             TSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHH----HHHHHTTCE
T ss_pred             ccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCE
Confidence            445544 32356666666655544  33 44555555 58886 55567899999999999999886    345567888


Q ss_pred             EEEeCCC-----CHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CC----CCC
Q 016612          121 VKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RP----LEL  189 (386)
Q Consensus       121 ~~~v~~~-----d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~----~~~  189 (386)
                      ++.++.+     |++++++.+++ ++++|++++|+||||.+.|++++.++|+.+++++|+|++|+.+... ..    ...
T Consensus       140 ~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~  219 (369)
T 3cq5_A          140 FIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKY  219 (369)
T ss_dssp             EEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTC
T ss_pred             EEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhC
Confidence            8888743     78999998876 8999999999999999999999999999999999999999754421 11    123


Q ss_pred             C-ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHH
Q 016612          190 G-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIA  265 (386)
Q Consensus       190 ~-~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~  265 (386)
                      + .++++.|+||++ |.+|+|+|++++++ ++.+.+......  ...+...++++...++.   +....+...++.+.+.
T Consensus       220 ~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~l~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  295 (369)
T 3cq5_A          220 PTKLVVSRTMSKAF-DFAGGRLGYFVANP-AFIDAVMLVRLP--YHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVA  295 (369)
T ss_dssp             TTTEEEEEESSSTT-SCGGGCCEEEEECT-HHHHHHHTTSCT--TCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHH
T ss_pred             CCCEEEEEechHhc-CCcccceEEEEeCH-HHHHHHHHcCCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            5 679999999999 44578999999974 455555443322  23555555555444432   2233444555556666


Q ss_pred             HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCC
Q 016612          266 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  345 (386)
Q Consensus       266 ~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~  345 (386)
                      +.+++..         +      .+.    +..++++++.++  ....++.+.+..+|+.+.+|+               
T Consensus       296 ~~L~~~g---------~------~~~----~~~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~~~---------------  339 (369)
T 3cq5_A          296 ARLEELG---------Y------AVV----PSESNFVFFGDF--SDQHAAWQAFLDRGVLIRDVG---------------  339 (369)
T ss_dssp             HHHHHHT---------C------EEE----CCSSSEEEEECC--SSHHHHHHHHHHTTEECBCCS---------------
T ss_pred             HHHHhCC---------C------EEC----CCCCeEEEEECC--CCHHHHHHHHHHCCEEEEECC---------------
Confidence            6665421         1      111    124577888775  234566666767788776651               


Q ss_pred             CCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 016612          346 IPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  383 (386)
Q Consensus       346 ~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  383 (386)
                                 .++++|+|++. ++++++++.|+++++.
T Consensus       340 -----------~~~~iRis~~~~~~i~~~~~~l~~~~~~  367 (369)
T 3cq5_A          340 -----------IAGHLRTTIGVPEENDAFLDAAAEIIKL  367 (369)
T ss_dssp             -----------CTTEEEEECCCHHHHHHHHHHHHHHHTT
T ss_pred             -----------CCCeEEEEeCCHHHHHHHHHHHHHHHhc
Confidence                       14569999973 6677788888777653

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.95  E-value=1.7e-25  Score=211.48  Aligned_cols=291  Identities=15%  Similarity=0.135  Sum_probs=189.6

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhh------c----CCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhh
Q 016612           47 YDYTRS-GNP-TRDALESLLAKL------D----KADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV  113 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~------~----g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~  113 (386)
                      ..|... |.+ +++++.+++.+.      .    ..++.+++++|++++. ++..++++||+|++++|+|+++.    ..
T Consensus        69 ~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~  144 (416)
T 1bw0_A           69 NGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYE----TV  144 (416)
T ss_dssp             SSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----HH
T ss_pred             CCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHH----HH
Confidence            456654 554 677777776631      1    2335666666679987 45557899999999999999886    44


Q ss_pred             cccCCcEEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc
Q 016612          114 TPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (386)
Q Consensus       114 ~~~~g~~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~  183 (386)
                      ++..|.+++.++.       .|++++++.++++++++++++|+||||.+.|   +++|.++|+++|++||+|++|+...+
T Consensus       145 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  224 (416)
T 1bw0_A          145 CKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVF  224 (416)
T ss_dssp             HHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBC
T ss_pred             HHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            5577888888764       2789999999888999999999999999998   99999999999999999999875221


Q ss_pred             ---------cCCCC---CCccEEEeccccccccCCCceEEEEEEcCh-hH----HHHHHHhhhhcCCCCChhhHHHHHhc
Q 016612          184 ---------SRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGE-RL----AKELYFLQNAEGSGLAPFDCWICLRG  246 (386)
Q Consensus       184 ---------~~~~~---~~~di~~~S~sK~~~g~~g~~~G~i~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (386)
                               .....   .+.+++++|+||+++ .+|+|+|+++++++ .+    ......... ...+.+...++++...
T Consensus       225 ~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~  302 (416)
T 1bw0_A          225 KGKDPNATFTSVADFETTVPRVILGGTAKNLV-VPGWRLGWLLYVDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEA  302 (416)
T ss_dssp             CSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS-CGGGCCEEEEEECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHH
T ss_pred             CCCCCCCCccCHHHccCCCcEEEEecchhhCC-CCCceEEEEEeeCchhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHH
Confidence                     11111   124688999999984 45789999998765 22    222222211 1223455555554443


Q ss_pred             CCc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----HhHHHHH
Q 016612          247 VKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVV  316 (386)
Q Consensus       247 ~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~l~  316 (386)
                      ++.     +....++..++.+.+.+.|++.+              ++.+..   ...+.++++.++..     .....+.
T Consensus       303 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------------g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (416)
T 1bw0_A          303 LLNTPQEHLDQIVAKIEESAMYLYNHIGECI--------------GLAPTM---PRGAMYLMSRIDLEKYRDIKTDVEFF  365 (416)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHHHHHHTTST--------------TEEECC---CCBTTEEEEEECGGGBSSCCSHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CCcccC---CCeeEEEEEeCCHHHcCCCCCHHHHH
Confidence            321     22333444455555555555432              222110   11255667776421     2345666


Q ss_pred             hhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          317 ETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       317 ~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      +.+ ...|+.+.+|..+.                       .++++|||++.  +++++.++.|.+++++
T Consensus       366 ~~l~~~~gi~v~~g~~f~-----------------------~~~~iRis~~~~~e~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          366 EKLLEEENVQVLPGTIFH-----------------------APGFTRLTTTRPVEVYREAVERIKAFCQR  412 (416)
T ss_dssp             HHHHHHHCEECEEGGGGT-----------------------CTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCEEEecccccC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            665 46788877765421                       14679999963  6677778888887765

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.95  E-value=2.1e-26  Score=215.10  Aligned_cols=301  Identities=14%  Similarity=0.091  Sum_probs=195.5

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHhc----CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAV-THLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~~----~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ...++++.+++++|.+  +.+++++|++++.++ ..+.    ++||+|++++|.|+++...+. .++..|.+++.++.+ 
T Consensus        45 ~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~  123 (384)
T 1eg5_A           45 HMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVPVDS  123 (384)
T ss_dssp             HHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECCBCT
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEccCC
Confidence            5688999999999976  566777778998754 4455    799999999999988865542 335678999998863 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcC--CEEEEeCCCCCCCcc-CCCCCCccEEEecccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~--~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK  200 (386)
                          |++++++.+++++++|++++|+||||.+.|+++|.++|+++|  +++|+|++|+.+... +....+.|++++|+||
T Consensus       124 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK  203 (384)
T 1eg5_A          124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHK  203 (384)
T ss_dssp             TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGG
T ss_pred             CCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHH
Confidence                899999999989999999999999999999999999999999  999999999865432 2223478999999999


Q ss_pred             ccccCCCceEEEEEEcChh-HHHHHHHh---hhhcCCCCChhhHHHHHhcCCc----HHHHHHHHHHHHHHHHHHHhhCC
Q 016612          201 FIAGHSDVMAGVLAVKGER-LAKELYFL---QNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      ++ |++|  +|+++++++. +...+...   ........+.....++..+++.    +....++..++.+.+.+.|++ .
T Consensus       204 ~~-g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~  279 (384)
T 1eg5_A          204 FH-GPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-L  279 (384)
T ss_dssp             GT-SCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             hc-CCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-C
Confidence            87 6666  5999987652 11111000   0011123444444433333332    233444555566666666654 2


Q ss_pred             CcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHH
Q 016612          273 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  352 (386)
Q Consensus       273 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~  352 (386)
                      .+              .+........+.++++.+.+. ....+.+.+...|+.+.+|..+...  +..      +.....
T Consensus       280 g~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~--~~~------~~~~~~  336 (384)
T 1eg5_A          280 GA--------------HIITPLEISLPNTLSVSFPNI-RGSTLQNLLSGYGIYVSTSSACTSK--DER------LRHVLD  336 (384)
T ss_dssp             TC--------------EECSCTTSBCTTEEEEECTTC-CHHHHHHHHHHTTEECBC--------------------CHHH
T ss_pred             Ce--------------EEeCCcccCCCCEEEEEeCCC-CHHHHHHHHhhCCeEEeccccccCC--CCc------chHHHH
Confidence            11              111000011245677776532 3556777777788988877642210  000      000111


Q ss_pred             hcCCC----CCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          353 ARGLT----EDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       353 ~~~~~----~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+..    ++++||+++    .++++++++.|+++++++
T Consensus       337 ~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  376 (384)
T 1eg5_A          337 AMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL  376 (384)
T ss_dssp             HTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            12222    468999997    378888888888887654

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.94  E-value=1.6e-26  Score=213.33  Aligned_cols=280  Identities=14%  Similarity=0.064  Sum_probs=190.9

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      ...++++++++++|.+  +.+++++|++++. ++.+++++||+|++++|+|+++.  +...++..|.+++.++.+     
T Consensus        35 ~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~  112 (352)
T 1iug_A           35 VFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTP  112 (352)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCC
T ss_pred             HHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCC
Confidence            5788999999999986  4556667789987 45567899999999999998874  234556678898888763     


Q ss_pred             CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCcc-CCCCCCccEEEecccccccc
Q 016612          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (386)
Q Consensus       128 d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (386)
                      |++++++   +++++|++++++||||.+.|+++|.++|+++  |+++|+|++|+.+... +....+.|++++|+||++.+
T Consensus       113 d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~  189 (352)
T 1iug_A          113 RPEDVAK---EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMC  189 (352)
T ss_dssp             CTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCC
T ss_pred             CHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccC
Confidence            5666665   6789999999999999999999999999999  9999999999866543 22234689999999998878


Q ss_pred             CCCceEEEEEEcChhHHHH---------HH----Hhh-hhcCCCCChhhHHHHHhcCC----cHHHHHHHHHHHHHHHHH
Q 016612          205 HSDVMAGVLAVKGERLAKE---------LY----FLQ-NAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAE  266 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~---------~~----~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~  266 (386)
                      +.|  +|+++++++.+ +.         +.    ... .......+......+..+++    .+....++..++.+.+.+
T Consensus       190 ~~g--~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~  266 (352)
T 1iug_A          190 PPG--LGFVALSPRAL-ERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYG  266 (352)
T ss_dssp             CSC--EEEEEECHHHH-HTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCc--eeEEEECHHHH-HHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766  69998875433 22         11    111 11112233333332222221    234455556666677777


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCC
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  346 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~  346 (386)
                      .+++. .+ ....+               ...+.++++.+++.....++.+.+...|+.+++|..      +        
T Consensus       267 ~L~~~-g~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~------~--------  315 (352)
T 1iug_A          267 VGEEG-GL-RPVPK---------------RFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQG------P--------  315 (352)
T ss_dssp             HHHHT-TC-EESCS---------------SBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCG------G--------
T ss_pred             HHHHC-CC-ccccc---------------ccCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCC------c--------
Confidence            77654 11 11100               013567888876333356777777777887776552      0        


Q ss_pred             CHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          347 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       347 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                               ..++++|++++.    ++++++++.|++++++
T Consensus       316 ---------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  347 (352)
T 1iug_A          316 ---------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEE  347 (352)
T ss_dssp             ---------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ---------cCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence                     125679999973    6677777777777654

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.94  E-value=9.3e-27  Score=218.60  Aligned_cols=286  Identities=14%  Similarity=0.156  Sum_probs=192.0

Q ss_pred             hHHHHHHHHHhhcCCC-c-eE-EeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-----
Q 016612           56 TRDALESLLAKLDKAD-R-AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----  126 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~-~i-~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----  126 (386)
                      ...++++.+++++|.+ + .+ ++++|++++. ++.+++++||+|++++|+|+++.  +...++..|.+++.++.     
T Consensus        52 ~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  129 (396)
T 2ch1_A           52 TMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRP  129 (396)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEecCCCCCC
Confidence            5788999999999986 3 45 5566679987 45557899999999999998873  22456678899988885     


Q ss_pred             CCHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccccc
Q 016612          127 CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (386)
Q Consensus       127 ~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (386)
                      .|++++++.+++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... +....+.|+++.|++|++++
T Consensus       130 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~  209 (396)
T 2ch1_A          130 FSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGA  209 (396)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCC
T ss_pred             CCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccC
Confidence            389999999886 8999999999999999999999999999999999999999865433 22344679999999999888


Q ss_pred             CCCceEEEEEEcChhHHHHHHHhh-----------------------hhcCCCCChhhHHHHHhcCCc-----HHHHHHH
Q 016612          205 HSDVMAGVLAVKGERLAKELYFLQ-----------------------NAEGSGLAPFDCWICLRGVKT-----MALRVEK  256 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  256 (386)
                      +.|  +|++++++ .+.+.+....                       .......+...+.++..+++.     +....++
T Consensus       210 ~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  286 (396)
T 2ch1_A          210 PPG--ITPISISP-KALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKR  286 (396)
T ss_dssp             CSS--CEEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCC--eEEEEECH-HHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            777  48888875 4444442210                       000012233333333333322     2334445


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc-ceeccCCCCccccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLI  335 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~~~~G~~~~~~  335 (386)
                      ..++.+.+.+.|++..         +.-.+...     ....+.++++.++......++.+.+.. .|+.+++|...   
T Consensus       287 ~~~~~~~l~~~L~~~g---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~---  349 (396)
T 2ch1_A          287 RIECAQILYEGLGKMG---------LDIFVKDP-----RHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGP---  349 (396)
T ss_dssp             HHHHHHHHHHHHHHHT---------CCBSSCSG-----GGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGG---
T ss_pred             HHHHHHHHHHHHHHCC---------CeeccCCc-----cccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccc---
Confidence            5555666666665431         11110000     001234778877533335667777654 38877665421   


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEe-c----cCChHHHHHHHHHHHhc
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISV-G----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~----~~~~~~~i~~l~~~l~~  383 (386)
                                          ..++++||++ +    .++++++++.|++++++
T Consensus       350 --------------------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~  382 (396)
T 2ch1_A          350 --------------------TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA  382 (396)
T ss_dssp             --------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             --------------------cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence                                1356799999 4    36788889988888765

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.94  E-value=1.8e-26  Score=220.44  Aligned_cols=293  Identities=15%  Similarity=0.125  Sum_probs=188.1

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhc--CCC--ceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLD--KAD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~--g~~--~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ....|.+. |.+ +++++.+++.  .  +.+  +.++++++++++.++.+++++||+|++++|+|+++...+    +..|
T Consensus       103 ~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g  176 (449)
T 3qgu_A          103 GYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCDIARIQMMFGSKPTVAVQDPSYPVYVDTS----VMMG  176 (449)
T ss_dssp             CCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHHHHHHCSSSCEEEEESCCTHHHHHH----HHHT
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHHHHHhCCCCEEEEcCCCChhHHHHH----HHcC
Confidence            34567654 554 4555555544  2  333  455555666999866778999999999999999986443    4455


Q ss_pred             cE----------EEEeCCCCHHHHHhhhC--CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc
Q 016612          119 VV----------VKRVNTCDLDEVASAIG--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (386)
Q Consensus       119 ~~----------~~~v~~~d~~~l~~~~~--~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~  183 (386)
                      .+          ++.++.++.+.+...+.  +++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+....
T Consensus       177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~  256 (449)
T 3qgu_A          177 MTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYIS  256 (449)
T ss_dssp             CSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred             CcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhc
Confidence            55          77777643222221121  58999999999999999986   88899999999999999999875322


Q ss_pred             c-----CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHH-------HHHHHhhhhcCCCCChhhHHHHHhcC
Q 016612          184 S-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-------KELYFLQNAEGSGLAPFDCWICLRGV  247 (386)
Q Consensus       184 ~-----~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (386)
                      .     ...    ..+.++++.|+||++ |.+|+|+|+++++++.+.       ..+.........+.+...+.++...+
T Consensus       257 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  335 (449)
T 3qgu_A          257 NPDCPKTIYEIPGADEVAIETCSFSKYA-GFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACL  335 (449)
T ss_dssp             CTTSCSSGGGSTTGGGTEEEEEECSGGG-TCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHT
T ss_pred             CCCCCCCHhhccCCCCcEEEEecchhhc-CCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHH
Confidence            1     111    125679999999999 556789999999765432       13333333334456666666666655


Q ss_pred             Cc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCc-
Q 016612          248 KT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-  321 (386)
Q Consensus       248 ~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-  321 (386)
                      ..     +....+.+.++.+.+.+.|++..         +      .+.   ....+.++++.++ .....++.+.+.. 
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~------~~~---~~~~~~~~~~~~~-~~~~~~~~~~l~~~  396 (449)
T 3qgu_A          336 QPEGLKEMNAMIKFYKENAQILKTTFTEMG---------F------SVY---GGDDAPYIWVGFP-GKPSWDVFAEILER  396 (449)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------C------CEE---ESSSSSEEEEECT-TSCHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHCC---------C------eee---CCCCeeEEEEECC-CCCHHHHHHHHHHH
Confidence            53     23334455556666666666531         1      111   0123567787776 2234455555544 


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHhcC
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~~~  384 (386)
                      .|+.+.+|..+..                     .++++||||+.  .+++++.++.|++++++-
T Consensus       397 ~gI~v~pg~~f~~---------------------~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~  440 (449)
T 3qgu_A          397 CNIVTTPGSGYGP---------------------AGEGFVRASAFGSRENILEAVRRFKEAYGKR  440 (449)
T ss_dssp             HCEECEEGGGGCG---------------------GGTTEEEEECCSCHHHHHHHHHHHHHHHC--
T ss_pred             CCEEEecchHhCC---------------------CCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            3787777654220                     13678999974  478888899998888653

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.94  E-value=1.8e-26  Score=215.03  Aligned_cols=302  Identities=16%  Similarity=0.142  Sum_probs=201.4

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .+...++++.+++++|.++.+++++|++|+. ++.++ +++||+|+++.++|+++...    ++..|.+++.++.+    
T Consensus        35 ~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~  110 (373)
T 3frk_A           35 GDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALA----VSYTGAKPIFVEPDIRTY  110 (373)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHH----HHHHSCEEEEECEETTTT
T ss_pred             CchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecccccc
Confidence            3578899999999999999999999999987 45556 78999999999999998643    45678888888764    


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCC--ccEEEeccc--cc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KF  201 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~--~di~~~S~s--K~  201 (386)
                        |++++++++++++++|+   ++||+|...|+++|.++|+++|+++|+|++|+.+...+....+  .|++++|++  |+
T Consensus       111 ~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~  187 (373)
T 3frk_A          111 NIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKN  187 (373)
T ss_dssp             EECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             CcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCCCc
Confidence              89999999998999888   7789999999999999999999999999999877654333334  799999976  99


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhcC------------CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHh
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEG------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA  269 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  269 (386)
                      +++++  ++|+++++++.+.+.+........            ..+++..+++....++.+....++..++.+.+.+.+.
T Consensus       188 l~~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~  265 (373)
T 3frk_A          188 LGSLG--DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGIN  265 (373)
T ss_dssp             SCCSS--SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCccc--eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            95423  379999887777666655443221            1235555555444444444444444555555555444


Q ss_pred             hCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccC----CC
Q 016612          270 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH----AS  345 (386)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~----~~  345 (386)
                      +.+    +..+.....         .......+.+...+   .+.+.+.|...|+.++.+......+.|.....    ..
T Consensus       266 ~~~----~~~~~~~~~---------~~~~~~~~~~~~~~---~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~  329 (373)
T 3frk_A          266 NPN----VIIPVEADY---------AKHVWYTFVIRSEK---RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGN  329 (373)
T ss_dssp             CTT----EECCCCCTT---------EECCCSSEEEEESS---HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTS
T ss_pred             cCc----eEeccCCCC---------CceeeEEEEEEeCC---HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCC
Confidence            332    111111000         00111223444432   55677777777887776542222333322211    11


Q ss_pred             CCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          346 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       346 ~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ++....    ...+.+|++++...+++.++.+.++|++.
T Consensus       330 ~~~~~~----~~~~~lrl~~~~~~t~~di~~~~~~l~~~  364 (373)
T 3frk_A          330 FPIAEK----IANEILSIPIWYGMKNEEIEYVIDKINAW  364 (373)
T ss_dssp             SHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHTC
T ss_pred             CHHHHH----HHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence            111111    01256999999888888888888888765

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.94  E-value=5e-26  Score=213.80  Aligned_cols=285  Identities=15%  Similarity=0.167  Sum_probs=190.0

Q ss_pred             HHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----CH
Q 016612           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DL  129 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~  129 (386)
                      ..++++.+++++|.+  +.+++++|++++. ++.+++++||+|++++|+|+++.    ..++..|.+++.++.+    |+
T Consensus        76 ~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~d~  151 (397)
T 2zyj_A           76 YAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAI----QAFRLQGPRFLTVPAGEEGPDL  151 (397)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTCCEEEEEEEETTEECH
T ss_pred             CHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCEEEecCcCCCCCCH
Confidence            346666667766764  4555555568987 45557899999999999999886    4445678888888753    89


Q ss_pred             HHHHhhhCC-CceEEE-EeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCC------CccE
Q 016612          130 DEVASAIGP-WTKLVW-VESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL------GADI  193 (386)
Q Consensus       130 ~~l~~~~~~-~~~~v~-~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~------~~di  193 (386)
                      +++++.+++ ++++|+ +++|+||||.+.+   +++|.++|+++|+++|+||+|+...+.     +....      +.++
T Consensus       152 ~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i  231 (397)
T 2zyj_A          152 DALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVI  231 (397)
T ss_dssp             HHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEE
T ss_pred             HHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEE
Confidence            999998874 788874 6899999999987   558999999999999999999864331     11112      3458


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHH
Q 016612          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       194 ~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l  268 (386)
                      ++.|+||+++  +|+|+|+++++ +++.+.+.........+.+...+.++...++.     +....+.+.++.+.+.+.+
T Consensus       232 ~~~s~sK~~~--~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  308 (397)
T 2zyj_A          232 YLGSFSKVLS--PGLRVAFAVAH-PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHAL  308 (397)
T ss_dssp             EEEESTTTTC--GGGCCEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccccc--ccceeEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999995  57899999987 55665555443332233355555555444432     2223334445555566666


Q ss_pred             hhC-CCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCC
Q 016612          269 ASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  347 (386)
Q Consensus       269 ~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~  347 (386)
                      ++. +.       ++      .+.  . +..+.++++.++......++.+.+...|+.+.+|..+..-            
T Consensus       309 ~~~~~~-------g~------~~~--~-~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~------------  360 (397)
T 2zyj_A          309 DREVPK-------EV------RYT--R-PKGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFAN------------  360 (397)
T ss_dssp             HHHSCT-------TS------EEC--C-CSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTT------------
T ss_pred             HHHCCC-------Ce------EEc--c-CCccEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCC------------
Confidence            542 20       11      111  0 1235677888754333566777777778887776542100            


Q ss_pred             HHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          348 VEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       348 ~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                             +..++++|||++.   +++++.++.|.+++++
T Consensus       361 -------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  392 (397)
T 2zyj_A          361 -------GGGENTLRLSYATLDREGIAEGVRRLGRALKG  392 (397)
T ss_dssp             -------SCCTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence                   1135789999974   5778888888887764

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=1.5e-26  Score=216.92  Aligned_cols=274  Identities=15%  Similarity=0.075  Sum_probs=186.2

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHHHhcCC-------------CCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGT-------------GEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~~~~~~-------------g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      +..+++++++++++|.+  +.+++++|++++. ++..++.+             ||+|++++|+|+++.    ..++..|
T Consensus        69 ~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g  144 (397)
T 3f9t_A           69 LLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFE----KGREMMD  144 (397)
T ss_dssp             HHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHH----HHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHH----HHHHHcC
Confidence            36788999999999886  4577788889986 44555554             999999999999986    4445668


Q ss_pred             cEEEEeCCC-----CHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc--------
Q 016612          119 VVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--------  184 (386)
Q Consensus       119 ~~~~~v~~~-----d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~--------  184 (386)
                      .+++.++.+     |++++++.+++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+...        
T Consensus       145 ~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~  224 (397)
T 3f9t_A          145 LEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKK  224 (397)
T ss_dssp             CEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCC
T ss_pred             ceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccccccc
Confidence            999999875     89999999987 8999999999999999999999999999999999999999754321        


Q ss_pred             -------CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhc---------CC--CCChhhHHHHHhc
Q 016612          185 -------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE---------GS--GLAPFDCWICLRG  246 (386)
Q Consensus       185 -------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~  246 (386)
                             +... +.|+++.|+||+++++.  ++|+++++++.+.+.+.......         +.  +.+....++.+..
T Consensus       225 ~~~~~~~~~~~-~~~~~~~s~~K~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  301 (397)
T 3f9t_A          225 KGVNYKFDFSL-GVDSITIDPHKMGHCPI--PSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRY  301 (397)
T ss_dssp             TTCCCCCSGGG-TCSEEECCTTTTTCCCS--SCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHH
T ss_pred             ccccccccccc-cCCeEEEccccccCCCC--CceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHH
Confidence                   1122 78999999999986543  57888887765544321111110         11  1122223332222


Q ss_pred             C--CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCccee
Q 016612          247 V--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSI  324 (386)
Q Consensus       247 ~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi  324 (386)
                      +  ..+....++..++.+.+.+.|++..         +...      .   ...++++++.+.+   ...+.+.+...|+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~------~---~~~~~~~~~~~~~---~~~~~~~l~~~gi  360 (397)
T 3f9t_A          302 LGREGQRKIVNECMENTLYLYKKLKENN---------FKPV------I---EPILNIVAIEDED---YKEVCKKLRDRGI  360 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CCBS------S---CCSSSEEEEECTT---HHHHHHHHHHTTC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHCC---------CEEE------c---CCCccEEEEEeCC---HHHHHHHHHhCCe
Confidence            2  1223444555566666666666541         1100      0   1246788888765   4456666666677


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                      .+++|..                          ++++||+++.    ++++++++.|+++++
T Consensus       361 ~v~~~~~--------------------------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          361 YVSVCNC--------------------------VKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             BCEECSS--------------------------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             EEeccCC--------------------------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            6665442                          4669999985    555566666665553

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.94  E-value=3e-26  Score=213.41  Aligned_cols=287  Identities=18%  Similarity=0.195  Sum_probs=188.9

Q ss_pred             hHHHHHHHHHhhcCC---CceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHH
Q 016612           56 TRDALESLLAKLDKA---DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV  132 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l  132 (386)
                      ..+++++.+++++|.   ++.+++++|++++..++..+ +||+|++++|.|+++...+. .++..|.+++.+  .|++++
T Consensus        59 ~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~l  134 (374)
T 2aeu_A           59 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGEI  134 (374)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHHH
Confidence            456778888888898   57788888999987554445 99999999999988655443 566789999888  699999


Q ss_pred             HhhhCCCceE-EEEeCCCCCCc-ccccHHHHHHHHHHcCCEEEEeCCCCCCC---ccC--CCCCCccEEEeccccccccC
Q 016612          133 ASAIGPWTKL-VWVESPTNPRQ-QICDIRKIAEMAHAHGALLLVDNSIMSPV---LSR--PLELGADIVMHSATKFIAGH  205 (386)
Q Consensus       133 ~~~~~~~~~~-v~~~~~~nptG-~~~~l~~i~~la~~~~~~li~D~a~~~~~---~~~--~~~~~~di~~~S~sK~~~g~  205 (386)
                      ++. ++++++ |++++|+|||| ...++++|.++|+++|+++|+|++|+...   ...  +...+.|++++|+||+++| 
T Consensus       135 ~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g-  212 (374)
T 2aeu_A          135 LNK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG-  212 (374)
T ss_dssp             HTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS-
T ss_pred             Hhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC-
Confidence            988 888999 99999999999 78899999999999999999999986542   111  2335789999999999865 


Q ss_pred             CCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH-HHHHHHHHHHHH----HHHHhhCCCcceEecC
Q 016612          206 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKI----AEFLASHPRVKKVNYA  280 (386)
Q Consensus       206 ~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l----~~~l~~~~~~~~~~~~  280 (386)
                        +|+|+++++ +++.+.+.......+...++..++++..+++.+.. +.++..++.+.+    .+.+.+.-       +
T Consensus       213 --~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-------~  282 (374)
T 2aeu_A          213 --PRGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKEL-------K  282 (374)
T ss_dssp             --CSCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHH-------T
T ss_pred             --cceEEEEEC-HHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-------h
Confidence              368999887 45666666555544555666666655554432212 344555555555    34443310       1


Q ss_pred             CCCCCCchhhhhhccCCCCceEEEE-eCCH-H--hHHHHH-hhcCcceeccCCCCccccccccccccCCCCCHHHHHhcC
Q 016612          281 GLPEHPGHELHYSQAKGAGSVLSFL-TGSL-A--LSKHVV-ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  355 (386)
Q Consensus       281 ~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~-~--~~~~l~-~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~  355 (386)
                      .+...++..+.   +...+.++.+. .... .  ...++. +.+...|+.+.+|..+     |                 
T Consensus       283 ~~~~~~g~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~-----~-----------------  337 (374)
T 2aeu_A          283 AIDDNINIVYE---RTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM-----P-----------------  337 (374)
T ss_dssp             TTCTTEEEEEE---ECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS-----C-----------------
T ss_pred             hhhhccCccee---eCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC-----C-----------------
Confidence            11100121111   12234444443 2211 1  011133 3344568877776431     1                 


Q ss_pred             CCCCeEEEEecc-----CChHHHHHHHHHHHhc
Q 016612          356 LTEDLVRISVGI-----EDVNDLISDLDKALRT  383 (386)
Q Consensus       356 ~~~~~iRis~~~-----~~~~~~i~~l~~~l~~  383 (386)
                      ..++++||+++.     .+++.+++.++++|++
T Consensus       338 ~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~  370 (374)
T 2aeu_A          338 GASKSLRIDLTSRDAERIDDNYIIKAIVESIKM  370 (374)
T ss_dssp             SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence            124579999973     3467778888777765

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.94  E-value=8.2e-26  Score=213.78  Aligned_cols=285  Identities=17%  Similarity=0.161  Sum_probs=189.5

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ....|.+. |.+ +++++.+++....+.+   +.+++++|++++. ++.+++++||+|++++|+|+++.    ..++..|
T Consensus        72 ~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g  147 (418)
T 3rq1_A           72 EHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYR----VICSDTG  147 (418)
T ss_dssp             HHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHH----HHHHHTT
T ss_pred             ccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHH----HHHHHcC
Confidence            34567776 776 7888888888777777   6677777789987 55668899999999999999886    4556789


Q ss_pred             cEEEEeCCC------CHHHHHhhhCC----Cce-EEEEeCC-CCCCcccccH---HHHHHHHH------HcCCEEEEeCC
Q 016612          119 VVVKRVNTC------DLDEVASAIGP----WTK-LVWVESP-TNPRQQICDI---RKIAEMAH------AHGALLLVDNS  177 (386)
Q Consensus       119 ~~~~~v~~~------d~~~l~~~~~~----~~~-~v~~~~~-~nptG~~~~l---~~i~~la~------~~~~~li~D~a  177 (386)
                      .+++.++..      |++++++.+++    +++ ++++++| +||||.+.+.   ++|+++|+      ++|+++|+||+
T Consensus       148 ~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~  227 (418)
T 3rq1_A          148 RTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVA  227 (418)
T ss_dssp             CEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECT
T ss_pred             CEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc
Confidence            999998852      78999988874    666 8888999 9999999974   55666666      89999999999


Q ss_pred             CCCCCcc---------CCCCCCc---cEEEeccccccccCCCceEEEEEE--cChhHHHHHHHhhhh----cCCCCChhh
Q 016612          178 IMSPVLS---------RPLELGA---DIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNA----EGSGLAPFD  239 (386)
Q Consensus       178 ~~~~~~~---------~~~~~~~---di~~~S~sK~~~g~~g~~~G~i~~--~~~~~~~~~~~~~~~----~~~~~~~~~  239 (386)
                      |......         .......   .++++|+||.+ |.+|+|+||+++  +++++.+.+......    .....+...
T Consensus       228 y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (418)
T 3rq1_A          228 YLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF-TMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPA  306 (418)
T ss_dssp             TGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTT-TCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHH
T ss_pred             cccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCC-cCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHH
Confidence            8532211         0111122   38889999999 556899999998  245666555443321    123455555


Q ss_pred             HHHHHhcCCcHH----------HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCC
Q 016612          240 CWICLRGVKTMA----------LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGS  308 (386)
Q Consensus       240 ~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~  308 (386)
                      +.++...++...          ...+.+.++.+.+.+.+++.         +++..          ...++ ++++.+.+
T Consensus       307 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------g~~~~----------~~~~~~~~~~~~~~  367 (418)
T 3rq1_A          307 MRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV---------GLPML----------PYRGGFFITIPTDS  367 (418)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCCCC----------CCCSSSEEEEECTT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCC----------CCCceEEEEcCCCC
Confidence            555555444321          11223334444444444432         12111          11234 44444533


Q ss_pred             HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhcC
Q 016612          309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       309 ~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~~  384 (386)
                         ..++.+.+...|+.+.+|                            ++++|||++   .++++++++.|++++++.
T Consensus       368 ---~~~~~~~l~~~gi~v~~g----------------------------~~~iRis~~~~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          368 ---ANAICEELKKEHIYVIAL----------------------------ANGIRIAACGIPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             ---HHHHHHHHHHTTEECEEC----------------------------SSEEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHhCCEEEecC----------------------------CCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence               345556666678876654                            234999986   488888999999998765

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.94  E-value=7.7e-26  Score=210.83  Aligned_cols=166  Identities=13%  Similarity=0.104  Sum_probs=131.8

Q ss_pred             chHHHHHHHHHhhcCCC---ceEE-eCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           55 PTRDALESLLAKLDKAD---RALC-FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~---~~i~-~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      +.++++++++++++|.+   +.++ ++||++++. ++.+++++||+|++++|.|.+..  +...+...|.+++.++.+  
T Consensus        52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  129 (376)
T 3f0h_A           52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHR--FVQLCEIHEIPYVALKLEHG  129 (376)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCC
Confidence            46888999999999876   3455 456689987 55667899999999998776643  224556678888877653  


Q ss_pred             ---CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 ---d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                         |++++++.++++++++++++|+||||.+.|+++|.++|+++|+++|+|++++.+... +....+.|++++|+||+++
T Consensus       130 ~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~  209 (376)
T 3f0h_A          130 KKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLA  209 (376)
T ss_dssp             CCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTC
T ss_pred             CCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCccccc
Confidence               899999988889999999999999999999999999999999999999999876543 2223468999999999998


Q ss_pred             cCCCceEEEEEEcChhHHHHHH
Q 016612          204 GHSDVMAGVLAVKGERLAKELY  225 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~  225 (386)
                      ++.|  +|++++++ .+.+.+.
T Consensus       210 ~~~G--~g~~~~~~-~~~~~~~  228 (376)
T 3f0h_A          210 CPPG--ISVIVLAP-RGVERVE  228 (376)
T ss_dssp             CCSS--CEEEEECH-HHHHHHH
T ss_pred             CCCc--eEEEEECH-HHHHHhh
Confidence            6777  57787764 4544443

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.94  E-value=3.5e-25  Score=205.88  Aligned_cols=301  Identities=17%  Similarity=0.149  Sum_probs=211.6

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .+...++++.+++++|.++.+++++||+|+. ++.++ +++||+|+++.++|+++..    .++..|.+++.++.+    
T Consensus        34 ~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~----~~~~~G~~~~~~~~~~~~~  109 (367)
T 3nyt_A           34 GPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAE----TVALLGAKPVYVDIDPRTY  109 (367)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHH----HHHHcCCEEEEEecCCccC
Confidence            3578899999999999999999999999987 45556 7899999999999999864    445678999988754    


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCc--cEEEecc--ccc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHSA--TKF  201 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~--di~~~S~--sK~  201 (386)
                        |++++++++++++++|+   ++||+|...++++|.++|+++|+++|+|++|+.+...+....+.  |++++||  +|+
T Consensus       110 ~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~  186 (367)
T 3nyt_A          110 NLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAP  186 (367)
T ss_dssp             SBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             CcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCc
Confidence              88999999999999988   88899999999999999999999999999998766433322333  9999996  899


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhh------------cCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHh
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA  269 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  269 (386)
                      ++++ |. +|+++++++.+.+.+......            ....+++..+++....++.+....++..++.+.+.+.++
T Consensus       187 l~~~-g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~  264 (367)
T 3nyt_A          187 LGCY-GD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLK  264 (367)
T ss_dssp             SCCS-SC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc-Cc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9543 33 899998877777766654432            124466677776666666666666677777777778777


Q ss_pred             hCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccc-cCCCCCH
Q 016612          270 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM-SHASIPV  348 (386)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~-~~~~~~~  348 (386)
                      +.+ +   ..+....  +       ......++.+.+++   .+.+.+.+...|+.++.+........|.+. ....++.
T Consensus       265 ~~~-~---~~~~~~~--~-------~~~~~~~~~~~~~~---~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~  328 (367)
T 3nyt_A          265 QVG-I---GTPFIEV--N-------NISVYAQYTVRMDN---RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPV  328 (367)
T ss_dssp             HTT-C---CCCCCCT--T-------EECCCSSEEEECSS---HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHH
T ss_pred             cCC-e---eccCCCC--C-------CceeeEEEEEEeCC---HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChH
Confidence            653 1   1111100  0       00112334555543   556777777778877665432333333332 2222322


Q ss_pred             HHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          349 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       349 ~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      ....    ....+|++++....++.++.+.+++++
T Consensus       329 ~~~~----~~~~l~lp~~~~~t~~~i~~v~~~~~~  359 (367)
T 3nyt_A          329 GDKA----ATQVMSLPMHPYLDTASIKIICAALTN  359 (367)
T ss_dssp             HHHH----HHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred             HHHH----HhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence            2111    135599999988888888888888765

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.94  E-value=2.1e-26  Score=212.50  Aligned_cols=283  Identities=15%  Similarity=0.115  Sum_probs=189.9

Q ss_pred             hHHHHHHHHHhhcCCC---ceE-EeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-----
Q 016612           56 TRDALESLLAKLDKAD---RAL-CFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----  126 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i-~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----  126 (386)
                      ...++++++++++|.+   +.+ ++++|++++..++..+.+ |+|+++++.|+++  .+...++..|.+++.++.     
T Consensus        34 ~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~-d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~  110 (353)
T 2yrr_A           34 VNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR-GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEP  110 (353)
T ss_dssp             HHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC-CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC-CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCCC
Confidence            5789999999999874   444 455667999865554333 8999999999876  233556678888888886     


Q ss_pred             CCHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCC-CCCCccEEEecccccccc
Q 016612          127 CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATKFIAG  204 (386)
Q Consensus       127 ~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-~~~~~di~~~S~sK~~~g  204 (386)
                      .|++++++.+++ ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..... ...+.|++++|++|++++
T Consensus       111 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~  190 (353)
T 2yrr_A          111 VDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSA  190 (353)
T ss_dssp             CCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCC
T ss_pred             CCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccC
Confidence            388999999887 899999999999999999999999999999999999999976654311 223679999999998877


Q ss_pred             CCCceEEEEEEcChhHHHHHH-------------H-h-hhhcCCCCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHH
Q 016612          205 HSDVMAGVLAVKGERLAKELY-------------F-L-QNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKI  264 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~-------------~-~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l  264 (386)
                      +.|  +|+++++++ +.+.+.             . . ........+.....++..+++.     +....++..++.+.+
T Consensus       191 ~~g--~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  267 (353)
T 2yrr_A          191 PPG--LAPIAASLE-ARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWV  267 (353)
T ss_dssp             CSS--CEEEEECHH-HHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCc--eEEEEECHH-HHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            777  599998754 433322             0 0 0111122333333333233322     233344555666666


Q ss_pred             HHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCC
Q 016612          265 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA  344 (386)
Q Consensus       265 ~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~  344 (386)
                      .+.+++. .+              .++. .....+.++++.++......++.+.+...|+.+.+|..+.           
T Consensus       268 ~~~L~~~-g~--------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~-----------  320 (353)
T 2yrr_A          268 LEELKAR-GF--------------RPYP-KASPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPT-----------  320 (353)
T ss_dssp             HHHHHHT-TC--------------EESC-SSSBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGG-----------
T ss_pred             HHHHHHC-CC--------------cccc-CccCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCcccc-----------
Confidence            6666653 11              1110 0011345667877533335677777777788777665310           


Q ss_pred             CCCHHHHHhcCCCCCeEEEEec----cCChH-HHHHHHHHHHhc
Q 016612          345 SIPVEVRQARGLTEDLVRISVG----IEDVN-DLISDLDKALRT  383 (386)
Q Consensus       345 ~~~~~~~~~~~~~~~~iRis~~----~~~~~-~~i~~l~~~l~~  383 (386)
                                  .++++|+|++    .++++ ++++.|+++++.
T Consensus       321 ------------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          321 ------------RGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             ------------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             ------------CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence                        2466999983    46677 888888888764

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.94  E-value=1.4e-25  Score=209.73  Aligned_cols=284  Identities=12%  Similarity=0.110  Sum_probs=186.7

Q ss_pred             hHHHHHHHHHhhcCC------CceEEeCcHHHHHHHH-HHhc---CCCCEEEecCC-CCCcHHHHHhhhcccCCcEEEEe
Q 016612           56 TRDALESLLAKLDKA------DRALCFTSGMAALAAV-THLL---GTGEEIVAGDD-LYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~------~~~i~~~~gt~al~~~-~~~~---~~g~~Vlv~~~-~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      ...++++.++++++.      ++.++++||++++.++ .++.   ++||+|+++++ .|+.+.   ...++..|.+++.+
T Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v  115 (385)
T 2bkw_A           39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVV  115 (385)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEE
Confidence            355677777777665      2455666778998754 5565   89999988754 444332   24456778999998


Q ss_pred             CC------CCHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCcc-CCCCCCccEE
Q 016612          125 NT------CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIV  194 (386)
Q Consensus       125 ~~------~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~-~~~~~~~di~  194 (386)
                      +.      .|++++++++++ ++++|++++++||||.+.|+++|.++|+++  |+++|+|++|+.+... +....++|++
T Consensus       116 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~  195 (385)
T 2bkw_A          116 RPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFA  195 (385)
T ss_dssp             CCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred             ecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEE
Confidence            87      389999999875 899999999999999999999999999999  9999999999876543 2334578999


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHH------------------HHh--hhhcC-----CCCChhhHHHHHhcCCc
Q 016612          195 MHSATKFIAGHSDVMAGVLAVKGERLAKEL------------------YFL--QNAEG-----SGLAPFDCWICLRGVKT  249 (386)
Q Consensus       195 ~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~------------------~~~--~~~~~-----~~~~~~~~~~~~~~~~~  249 (386)
                      ++|+||+++|+.|  .|+++++++.+.+.+                  ...  ....+     ...+......+..+++.
T Consensus       196 ~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  273 (385)
T 2bkw_A          196 LTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE  273 (385)
T ss_dssp             EEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred             EecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999998887777  489988755433122                  110  11111     12333333333333322


Q ss_pred             -----HHHHHHHHHHHHHHHHHHH-hhCCCcceEecCCCCCCCchhhhhhcc-C-CCCceEEEEeCCHHhHHHHHhhcCc
Q 016612          250 -----MALRVEKQQDNAQKIAEFL-ASHPRVKKVNYAGLPEHPGHELHYSQA-K-GAGSVLSFLTGSLALSKHVVETTKY  321 (386)
Q Consensus       250 -----~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~l~~~~~~~i~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~l~~  321 (386)
                           +....++..++.+.+.+.+ ++. .+              .++...+ . ..+.++++.+++   ..++.+.+..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~--------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~  335 (385)
T 2bkw_A          274 ILEEGLHKRWDLHREMSDWFKDSLVNGL-QL--------------TSVSRYPSNMSAHGLTAVYVAD---PPDVIAFLKS  335 (385)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTT-CC--------------EESSCSSSTTBCSSCEEEECSC---HHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHHHHHHHHHHhc-Cc--------------eecccCcccccCCceEEEecCC---HHHHHHHHHH
Confidence                 2233444555556666666 432 11              1110000 1 246788888865   4567777767


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEE-ec-------cCChHHHHHHHHHHHhcC
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS-VG-------IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis-~~-------~~~~~~~i~~l~~~l~~~  384 (386)
                      .|+.+++|....                      ..++++||| ++       .++++++++.|+++++++
T Consensus       336 ~gi~v~~g~~~~----------------------~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          336 HGVVIAGGIHKD----------------------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK  384 (385)
T ss_dssp             TTEECBCCCCTT----------------------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             CCeEEeCCCCcc----------------------cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence            788877664310                      124679999 54       478889999999888764

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.94  E-value=4.6e-25  Score=207.50  Aligned_cols=281  Identities=18%  Similarity=0.171  Sum_probs=191.3

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH-h--cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHH
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTH-L--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE  131 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~-~--~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~  131 (386)
                      +...++++.+++++|.++.+++++|++++.+++. +  +.+||.|+++.|.|+++...+    +..|.+++.++.+|+++
T Consensus        91 ~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~d~~~  166 (401)
T 2bwn_A           91 AYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGI----KRNAGPKRIFRHNDVAH  166 (401)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHH----HHSCCCEEEECTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHH----HHcCCeEEEEcCCCHHH
Confidence            3788999999999998888999999886554433 3  369999999999999886443    45789999999889999


Q ss_pred             HHhhhC----CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCC-------CC--CCccEEEecc
Q 016612          132 VASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-------LE--LGADIVMHSA  198 (386)
Q Consensus       132 l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-------~~--~~~di~~~S~  198 (386)
                      +++.++    +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.+...       ..  ...|+++.|+
T Consensus       167 le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~  246 (401)
T 2bwn_A          167 LRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTL  246 (401)
T ss_dssp             HHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEES
T ss_pred             HHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeec
Confidence            998876    5899999999999999999999999999999999999999985543210       11  1358999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHhhh--hcCCCCChhhHHHHHhcCC---cH--HHHHHHHHHHHHHHHHHHhhC
Q 016612          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVK---TM--ALRVEKQQDNAQKIAEFLASH  271 (386)
Q Consensus       199 sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~l~~~l~~~  271 (386)
                      ||+++++    +|+++++ +.+.+.+.....  ....+.++..+.++..+++   ..  ....++..++.+.+.+.|++.
T Consensus       247 sK~~~~~----GG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (401)
T 2bwn_A          247 AKAYGVF----GGYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  321 (401)
T ss_dssp             SSTTCSC----CEEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccCC----CCEEecC-HHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence            9999643    3888876 555554443221  1222334444433333332   22  334455556666666666543


Q ss_pred             CCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC-cceeccCCCCccccccccccccCCCCCHHH
Q 016612          272 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEV  350 (386)
Q Consensus       272 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~  350 (386)
                               ++.      ++    ...++++++.+++......+.+.+. ..|+.+.++....   .|            
T Consensus       322 ---------g~~------~~----~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~---~~------------  367 (401)
T 2bwn_A          322 ---------GMP------II----DHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPT---VP------------  367 (401)
T ss_dssp             ---------TCC------BC----CCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTT---SC------------
T ss_pred             ---------CCc------cc----CCCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCC---CC------------
Confidence                     111      11    1134688998876555667777774 6788776544210   00            


Q ss_pred             HHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          351 RQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       351 ~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                           .+.+++|+|++.    ++++++++.|++++++
T Consensus       368 -----~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~  399 (401)
T 2bwn_A          368 -----RGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR  399 (401)
T ss_dssp             -----TTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred             -----CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence                 023579999984    5666666666666554

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.94  E-value=6.8e-26  Score=211.08  Aligned_cols=304  Identities=17%  Similarity=0.192  Sum_probs=202.2

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .+...++++.++++++.++.+++++|++|+. ++..+ +++||+|+++.|+|+++.    ..++..|.+++.++.+    
T Consensus        37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~  112 (374)
T 3uwc_A           37 GAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASV----GAIVQAGATPVLVDSENGYV  112 (374)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTSS
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHH----HHHHHcCCEEEEEecCCCCC
Confidence            3578899999999999999999999999987 45556 899999999999999886    4456789999999875    


Q ss_pred             -CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCC--CccEEEeccc--ccc
Q 016612          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSAT--KFI  202 (386)
Q Consensus       128 -d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~--~~di~~~S~s--K~~  202 (386)
                       |++++++.+++++++|+   |+||||.+.|+++|.++|+++|+++|+|++|+.+...+....  ..|++++|+|  |++
T Consensus       113 ~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l  189 (374)
T 3uwc_A          113 IDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNL  189 (374)
T ss_dssp             BCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSS
T ss_pred             cCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcC
Confidence             89999999998898888   899999999999999999999999999999987654322222  3699999977  999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhc------------CCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhh
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAE------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  270 (386)
                      ++++ . +|+++++++.+.+.+.......            ...+....+.+....+..+....++..++.+.+.+.+.+
T Consensus       190 ~~~g-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  267 (374)
T 3uwc_A          190 NVWS-D-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVD  267 (374)
T ss_dssp             CCSS-C-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGG
T ss_pred             Cccc-e-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5533 2 7999988777766665543211            112344555555555555555556666666666666665


Q ss_pred             CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccC----CCC
Q 016612          271 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH----ASI  346 (386)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~----~~~  346 (386)
                      .+..  +..+.....         .......+.+...+   ...+.+.+...|+.++.|........|.....    ..+
T Consensus       268 ~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~---~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~  333 (374)
T 3uwc_A          268 LSEF--IDVPVRREG---------VYHVFHIYVLRVKY---RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDF  333 (374)
T ss_dssp             GTTT--EECCCCCTT---------EECCCSSEEEEETT---HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSC
T ss_pred             CCCe--EEeccCCCC---------CceeeEEEEEEcCC---HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCC
Confidence            4310  111111100         00001223333332   45667777777887776652222222322110    111


Q ss_pred             CHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          347 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       347 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                      +....    ...+.+|++++.    ++++++++.|++++++.
T Consensus       334 ~~~~~----~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          334 PMAEK----HGEAVITLPAHPYLTEEEINYIIKKVREFYLEK  371 (374)
T ss_dssp             HHHHH----HHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHH----HHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            11100    112569999864    67777777777777653

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.94  E-value=6.6e-25  Score=204.36  Aligned_cols=303  Identities=13%  Similarity=0.095  Sum_probs=214.0

Q ss_pred             chHHHHHHHH-HhhcC-CCceEEeCcHHHHHH-HHHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLL-AKLDK-ADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l-~~~~g-~~~~i~~~~gt~al~-~~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      |...++++.+ ++++| .++.+++++|++|+. ++.++ +++||+|+++.++|.++..    .+...|.+++.++.+   
T Consensus        36 ~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~----~~~~~G~~~~~v~~~~~~  111 (377)
T 3ju7_A           36 PINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPL----AAIWCGLEPYFIDISIDD  111 (377)
T ss_dssp             HHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTT
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHH----HHHHcCCEEEEEecCCcc
Confidence            6788999999 99999 778999999999987 55566 8999999999999999864    445789999988753   


Q ss_pred             ---CHHHHHhhh-CCC--ceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCC---CccEEEecc
Q 016612          128 ---DLDEVASAI-GPW--TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL---GADIVMHSA  198 (386)
Q Consensus       128 ---d~~~l~~~~-~~~--~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~---~~di~~~S~  198 (386)
                         |++++++++ +++  |++|+   ++||+|...|+++|.++|+ +|+++|+|++|+.+........   ..|+.++|+
T Consensus       112 ~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~  187 (377)
T 3ju7_A          112 WYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSF  187 (377)
T ss_dssp             CSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEEC
T ss_pred             CCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEEC
Confidence               899999988 566  89887   7788999999999999999 9999999999987764332222   257777775


Q ss_pred             --ccccccCCCceEEEEEEcChhHHHHHHHhhhhc------------CCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHH
Q 016612          199 --TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  264 (386)
Q Consensus       199 --sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  264 (386)
                        +|++++  | .+|+++++++++.+.++.+....            ...++..++++....++.+..+.++..++++.+
T Consensus       188 ~~~K~l~~--g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~  264 (377)
T 3ju7_A          188 HATKPFGI--G-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWY  264 (377)
T ss_dssp             BTTSSSCC--B-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCC--C-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              699965  3 47999998888877776655422            345777788877777888888888889999999


Q ss_pred             HHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccccccc--
Q 016612          265 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS--  342 (386)
Q Consensus       265 ~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~--  342 (386)
                      .+.|++.+.+.....+.    .+       ......++.+.+++....+.+.+.|...||.++.+........|.+..  
T Consensus       265 ~~~L~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~  333 (377)
T 3ju7_A          265 KQLLQSNGLMKKGWQLQ----KT-------EAVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYK  333 (377)
T ss_dssp             HHHHHHTTTTTTTCBCC----CC-------SCBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSC
T ss_pred             HHHhcCCCCccccccCC----CC-------CcceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCC
Confidence            99998765220000000    00       001122345555543347788888888898876654222233333321  


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          343 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                      ...++.....    ..+.+|++++..-.++.++.+.++|++
T Consensus       334 ~~~~p~~~~~----~~~~l~lp~~~~~t~~di~~v~~~l~~  370 (377)
T 3ju7_A          334 STDLTRTNKI----AKRIVSLPLWEGMTKEIVEQIVICLGQ  370 (377)
T ss_dssp             BSCCHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHH----HhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence            1223322221    135599999876666666666666654

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.94  E-value=4.4e-25  Score=206.72  Aligned_cols=255  Identities=18%  Similarity=0.232  Sum_probs=181.3

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .+...++++.+++++|.++.+++++|++|+.+ +.++ +++||+|+++.|+|+++..    .++..|.+++.++.+    
T Consensus        37 ~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~  112 (388)
T 1b9h_A           37 GDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQ----AAQRLGAVTVPVDVDAATY  112 (388)
T ss_dssp             CSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTC
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHH----HHHHcCCEEEEEecCCCcC
Confidence            35788999999999999889999999999874 5556 7899999999999999863    445788898888753    


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCC---CCCCccEEEeccc--c
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP---LELGADIVMHSAT--K  200 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~---~~~~~di~~~S~s--K  200 (386)
                        |++++++.+++++++|+   |+||+|.+.++++|.++|+++|++||+|++|+.+.....   ...+ |++++|+|  |
T Consensus       113 ~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K  188 (388)
T 1b9h_A          113 NLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGK  188 (388)
T ss_dssp             CBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTS
T ss_pred             CCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCC
Confidence              79999999988888887   999999999999999999999999999999987654311   1222 67777777  6


Q ss_pred             ccccCCCceEEEEEEcChhH--HHHHHHhhhhc-------------CC--CCChhhHHHHHhcCCcHHHHHHHHHHHHHH
Q 016612          201 FIAGHSDVMAGVLAVKGERL--AKELYFLQNAE-------------GS--GLAPFDCWICLRGVKTMALRVEKQQDNAQK  263 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~--~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (386)
                      +++|  + ++|+++++++.+  .+.+.......             +.  .++....+++...++.+....++..++.+.
T Consensus       189 ~l~g--~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~  265 (388)
T 1b9h_A          189 LMTA--G-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTL  265 (388)
T ss_dssp             SSCS--S-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cccC--C-CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6644  2 689999886645  44443322110             11  144555555555666666777777778888


Q ss_pred             HHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhhcCcceeccCCCC
Q 016612          264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGS  330 (386)
Q Consensus       264 l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~  330 (386)
                      +.+.|++.+.+. .. ..-..         ..+..+.++++.+++.  ...+.+.+.+...|+.++.+.
T Consensus       266 l~~~L~~~~~~~-~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~  323 (388)
T 1b9h_A          266 LSRLLGAIDGVV-PQ-GGDVR---------ADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAF  323 (388)
T ss_dssp             HHHHHHTSTTCE-EC-CCCTT---------CCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECC
T ss_pred             HHHHhccCCCcc-cc-CCCcC---------CCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCccccc
Confidence            888887654221 10 00000         0012357888888642  246678888777788776543

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.94  E-value=3.2e-25  Score=205.41  Aligned_cols=280  Identities=11%  Similarity=0.103  Sum_probs=188.4

Q ss_pred             chHHHHHHHHHhhcCCC---ceEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD---RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~---~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +..+++++++++++|.+   +.++++||++++.+ +.+++++ +.+++..+.|. .  .+...++..|++++.++.+   
T Consensus        43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~-~--~~~~~~~~~g~~~~~v~~~~~~  118 (362)
T 3ffr_A           43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFS-K--RFYEFAGELGREAYKEEAAFGK  118 (362)
T ss_dssp             HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHH-H--HHHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHH-H--HHHHHHHHhCCCeEEEecCCCC
Confidence            46788999999999873   35666777899874 5567777 44445544443 2  2234566779998888754   


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc-CCEEEEeCCCCCCCccCCCCCCccEEEecccccccc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAG  204 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~-~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g  204 (386)
                        |+++++  +++++++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+....... ..|++++|+||++++
T Consensus       119 ~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~-~~d~~~~s~~K~~~~  195 (362)
T 3ffr_A          119 GFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWT-KIDSVFFSVQKCFGL  195 (362)
T ss_dssp             CCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTT-SCSEEEEETTSTTCC
T ss_pred             CCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChh-HCcEEEEecccccCC
Confidence              788888  778999999999999999999999999999999 99999999998776532222 289999999999986


Q ss_pred             CCCceEEEEEEcChhHHHHHHHhhhhc---------------------CCCCChhhHHHHHhcCC-----cHHHHHHHHH
Q 016612          205 HSDVMAGVLAVKGERLAKELYFLQNAE---------------------GSGLAPFDCWICLRGVK-----TMALRVEKQQ  258 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  258 (386)
                      ++|  +|++++++ ++.+.+.......                     ....+......+..+++     .+....++..
T Consensus       196 ~~G--~g~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  272 (362)
T 3ffr_A          196 PAG--LGVWILND-RVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE  272 (362)
T ss_dssp             CSC--CEEEEEEH-HHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CCc--eEEEEECH-HHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            777  57787764 4544444333200                     11222232322222222     1345556666


Q ss_pred             HHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhh-ccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccc
Q 016612          259 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS-QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISM  337 (386)
Q Consensus       259 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~  337 (386)
                      ++.+.+.+.+++.+.+              .++.. .....+.++++.+++  ...++.+.+...|+.+++|...     
T Consensus       273 ~~~~~l~~~L~~~~g~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g~~~-----  331 (362)
T 3ffr_A          273 EKAALINTYIESSKVF--------------SFGVEDAKLRSMTTIVANTTM--LPGEINKILEPFDMAVGAGYGS-----  331 (362)
T ss_dssp             HHHHHHHHHHHHCSSE--------------EESSSCGGGBCSSEEEEEESS--CHHHHHHHHGGGTEEEEECSGG-----
T ss_pred             HHHHHHHHHHHHccCc--------------eeccCChhhcCCceEEEecCC--CHHHHHHHHHHCCeEEecCccc-----
Confidence            7777777777765421              11110 001235678888876  4677888888888887766321     


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 016612          338 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  383 (386)
Q Consensus       338 p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  383 (386)
                                        ..++++|||++....++.++.+.++|++
T Consensus       332 ------------------~~~~~iRis~~~~~~~e~i~~l~~~l~~  359 (362)
T 3ffr_A          332 ------------------KKETQIRIANFPAHSLEQVHKLVQTLKE  359 (362)
T ss_dssp             ------------------GTTTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ------------------cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                              1357799999876666666666666654

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.94  E-value=9.8e-26  Score=213.53  Aligned_cols=296  Identities=15%  Similarity=0.099  Sum_probs=190.6

Q ss_pred             CccccCC-CCchHHHHHHHHHhhcCCC-ceEEeCcH-HHHH--HHHHH-hcCC------------CCEEEecCCCCCcHH
Q 016612           46 PYDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSG-MAAL--AAVTH-LLGT------------GEEIVAGDDLYGGTD  107 (386)
Q Consensus        46 ~~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~g-t~al--~~~~~-~~~~------------g~~Vlv~~~~~~~~~  107 (386)
                      .+.|... |.+   ++++.++++++.+ +.|++++| ++++  .++.. +.++            +|+|++++|+|+++.
T Consensus        69 ~~~Y~~~~G~~---~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~  145 (422)
T 3d6k_A           69 CRNYGGLLGIA---DIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHF  145 (422)
T ss_dssp             TTSSCCSSCCH---HHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHH
T ss_pred             hhCCCCCCCCH---HHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHH
Confidence            4567665 554   5555666666765 45555555 5776  55444 4455            347999999999886


Q ss_pred             HHHhhhcccCCcEEEEeCCC----CHHHHHhhhCC-CceEEE-EeCCCCCCcccccHH---HHHHHHH-HcCCEEEEeCC
Q 016612          108 RLLSRVTPKTGVVVKRVNTC----DLDEVASAIGP-WTKLVW-VESPTNPRQQICDIR---KIAEMAH-AHGALLLVDNS  177 (386)
Q Consensus       108 ~~~~~~~~~~g~~~~~v~~~----d~~~l~~~~~~-~~~~v~-~~~~~nptG~~~~l~---~i~~la~-~~~~~li~D~a  177 (386)
                          ..++..|.+++.++.+    |++++++.+++ ++++|+ +++|+||||.+.+.+   +|.++|+ ++|++||+||+
T Consensus       146 ----~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~  221 (422)
T 3d6k_A          146 ----TITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNA  221 (422)
T ss_dssp             ----HHHHHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred             ----HHHHHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECC
Confidence                4455678888888763    89999999875 789988 689999999999855   7888888 89999999999


Q ss_pred             CCCCCc-c------CC-------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHH
Q 016612          178 IMSPVL-S------RP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (386)
Q Consensus       178 ~~~~~~-~------~~-------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (386)
                      |+...+ .      ..       ...+.++++.|+||+ +++ |+|+||++++ +++.+.+.........+.+...+.++
T Consensus       222 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~-GlriG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~  298 (422)
T 3d6k_A          222 YALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THA-GSGVSFFASS-KENIEWYASHANVRGIGPNKLNQLAH  298 (422)
T ss_dssp             TTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCT-TSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             ccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCc-ccceEEEEeC-HHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            973111 1      11       123678999999998 454 7999999987 55666666555555555667666666


Q ss_pred             HhcCCcH-------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHH
Q 016612          244 LRGVKTM-------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  316 (386)
Q Consensus       244 ~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~  316 (386)
                      ...++..       ....+.+.++.+.+.+.+.+.          ++.+++..+.  . +..+.++++.++.. ..+.+.
T Consensus       299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----------l~~~~~~~~~--~-p~~g~~~~~~~~~~-~~~~~~  364 (422)
T 3d6k_A          299 AQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSR----------LSEYGVAKWT--S-PTGGYFISVDVVPG-TASRVV  364 (422)
T ss_dssp             HHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HGGGTCEEEC--C-CSBSSCEEEEESTT-CHHHHH
T ss_pred             HHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCcCCceEEe--C-CCcceEEEEECCCC-CHHHHH
Confidence            5555441       111222333444444455431          0000001110  1 12356788888643 245667


Q ss_pred             hhcCcceeccCCC-CccccccccccccCCCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhc
Q 016612          317 ETTKYFSITVSFG-SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRT  383 (386)
Q Consensus       317 ~~l~~~gi~~~~G-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~  383 (386)
                      +.+...|+.+.+| ..+..-  +                ...++++|||++   .+++++.++.|++++++
T Consensus       365 ~~l~~~gV~v~~~g~~f~~~--~----------------~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  417 (422)
T 3d6k_A          365 ELAKEAGIALTGAGSSFPLH--N----------------DPNNENIRLAPSLPPVAELEVAMDGFATCVLM  417 (422)
T ss_dssp             HHHHHTTEECCCTTTTSGGG--C----------------CTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCeEEEcCccccCCC--C----------------CCCCCeEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            7777788988874 322100  0                012578999997   37788888888888764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.94  E-value=3.7e-26  Score=214.52  Aligned_cols=322  Identities=14%  Similarity=0.100  Sum_probs=207.6

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHH-H
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-H   88 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~-~   88 (386)
                      ..+++..+  ...+|..+|.+.++......    ...+.|+....+.+.++++++++++|.++.++++||++|+..++ .
T Consensus        37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~  112 (395)
T 3nx3_A           37 KYLDFSSGIGVCALGYNHAKFNAKIKAQVD----KLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKT  112 (395)
T ss_dssp             EEEESSHHHHTCTTCBSCHHHHHHHHHHHT----TCSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHH
T ss_pred             EEEECCCcHHhccCCCCCHHHHHHHHHHHH----hccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHH
Confidence            35566522  35577756665543221111    12223332345689999999999999888999999999987443 3


Q ss_pred             hc-------CCCCEEEecCCCCCcHHHHH---------hhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCC
Q 016612           89 LL-------GTGEEIVAGDDLYGGTDRLL---------SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR  152 (386)
Q Consensus        89 ~~-------~~g~~Vlv~~~~~~~~~~~~---------~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~npt  152 (386)
                      +.       .++++|++.+|.|+++....         .......+.++..++..|++++++++++++++|++++++|++
T Consensus       113 ~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~~  192 (395)
T 3nx3_A          113 ARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNEKTCAIILESVQGEG  192 (395)
T ss_dssp             HHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECTT
T ss_pred             HHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCCC
Confidence            32       46799999999997753221         122233446778888889999999999899999999999999


Q ss_pred             ccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhH-H
Q 016612          153 QQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-A  221 (386)
Q Consensus       153 G~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~-~  221 (386)
                      |.+.+    +++|.++|++||+++|+||+|+ .+...     .......|++  |+||.+++  |+++|+++++++ + .
T Consensus       193 G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~--G~~~G~~~~~~~-~~~  267 (395)
T 3nx3_A          193 GINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGC--GLSVGAFVINQK-VAS  267 (395)
T ss_dssp             SCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTT--TSCCEEEEECHH-HHH
T ss_pred             CcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccC--CCceEEEEEchh-hhh
Confidence            99976    9999999999999999999986 22211     1112334655  57899964  688999998754 4 5


Q ss_pred             HHHHHhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC
Q 016612          222 KELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  299 (386)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~  299 (386)
                      +.+...........++..++++..+++.+.  ...++..++.+.+.+.+++..          ..++..    ...++.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~----~~~~~~g  333 (395)
T 3nx3_A          268 NSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELI----------NEFDFC----KKRKGLG  333 (395)
T ss_dssp             HHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH----------HHCTTE----EEEEEET
T ss_pred             hhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------HhCCCe----EEEEeEE
Confidence            544333223334556666666555444221  122333344444444444321          000100    1113457


Q ss_pred             ceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHH
Q 016612          300 SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLIS  375 (386)
Q Consensus       300 ~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~  375 (386)
                      .++++.+.+......+.+.+...|+.+++++                           ++++|++++    .++++++++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---------------------------~~~iRi~~~~~~t~e~i~~~l~  386 (395)
T 3nx3_A          334 FMQGLSLDKSVKVAKVIQKCQENALLLISCG---------------------------ENDLRFLPPLILQKEHIDEMSE  386 (395)
T ss_dssp             TEEEEEECTTSCHHHHHHHHHHTTEECEEET---------------------------TTEEEECCCTTCCHHHHHHHHH
T ss_pred             EEEEEEeCCcchHHHHHHHHHHCCCEEecCC---------------------------CCEEEEECCCCCCHHHHHHHHH
Confidence            8889988654446777888877888765432                           456999864    477888888


Q ss_pred             HHHHHHhc
Q 016612          376 DLDKALRT  383 (386)
Q Consensus       376 ~l~~~l~~  383 (386)
                      .|++++++
T Consensus       387 ~l~~~l~~  394 (395)
T 3nx3_A          387 KLRKALKS  394 (395)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            88888764

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.94  E-value=2.9e-25  Score=210.38  Aligned_cols=295  Identities=16%  Similarity=0.137  Sum_probs=193.3

Q ss_pred             ccc-cCC-CCchHHHHHHHHHhhcCCC--ceEEeCcHHHHHH--H-HHHhcC--C---------CCEEEecCCCCCcHHH
Q 016612           47 YDY-TRS-GNPTRDALESLLAKLDKAD--RALCFTSGMAALA--A-VTHLLG--T---------GEEIVAGDDLYGGTDR  108 (386)
Q Consensus        47 ~~y-~~~-g~~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~--~-~~~~~~--~---------g~~Vlv~~~~~~~~~~  108 (386)
                      ..| .+. |.+   ++++.++++++.+  +.+++++++++++  + +..+++  +         ||+|++++|+|+++. 
T Consensus        63 ~~Yp~~~~g~~---~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~-  138 (423)
T 3ez1_A           63 RNYPGGVAGLP---SARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHF-  138 (423)
T ss_dssp             TSSCSCTTCCH---HHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHH-
T ss_pred             hCCCCCCCChH---HHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHH-
Confidence            556 544 444   6677777777765  4455555568885  4 455677  7         599999999998886 


Q ss_pred             HHhhhcccCCcEEEEeCCC----CHHHHHhhh--CCCceEEEEe-CCCCCCcccccHH---HHHHHH-HHcCCEEEEeCC
Q 016612          109 LLSRVTPKTGVVVKRVNTC----DLDEVASAI--GPWTKLVWVE-SPTNPRQQICDIR---KIAEMA-HAHGALLLVDNS  177 (386)
Q Consensus       109 ~~~~~~~~~g~~~~~v~~~----d~~~l~~~~--~~~~~~v~~~-~~~nptG~~~~l~---~i~~la-~~~~~~li~D~a  177 (386)
                         ..++..|.+++.++.+    |++++++++  .+++++|++. +|+||||.+.+.+   +|.++| +++|+++|+||+
T Consensus       139 ---~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~  215 (423)
T 3ez1_A          139 ---LLLQTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDA  215 (423)
T ss_dssp             ---HHHHHHTCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECT
T ss_pred             ---HHHHHcCCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECC
Confidence               4455678888888763    899999999  5789999765 8999999999865   888888 899999999999


Q ss_pred             CCCCCccC--------C-------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHH
Q 016612          178 IMSPVLSR--------P-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       178 ~~~~~~~~--------~-------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      |+...+..        .       ...+.++++.|+||++ + +|+|+||++++ +.+.+.+...........+...+.+
T Consensus       216 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a  292 (423)
T 3ez1_A          216 YRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKIT-F-AGAGLGFVASS-EDNIRWLSKYLGAQSIGPNKVEQAR  292 (423)
T ss_dssp             TSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTS-C-SSSSCEEEEEC-HHHHHHHHHHHHHSCSCCCHHHHHH
T ss_pred             cchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhc-c-CCcceEEEEeC-HHHHHHHHHHHhhhccCCCHHHHHH
Confidence            87422211        1       1336789999999984 4 37899999987 4566666666655555666666555


Q ss_pred             HHhcCCc----H----HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCC-chhhhhhccCCCCceEEEEeCCHHhHH
Q 016612          243 CLRGVKT----M----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP-GHELHYSQAKGAGSVLSFLTGSLALSK  313 (386)
Q Consensus       243 ~~~~~~~----~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~  313 (386)
                      +...+..    +    ....+.+.++.+.+.+.+.+.          ++.+. +..+.  . +..+.++++.++.. ..+
T Consensus       293 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----------l~~~~~~~~~~--~-p~~g~~~~~~~~~~-~~~  358 (423)
T 3ez1_A          293 HVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAE----------LGEGGEYATWT--L-PKGGYFISLDTAEP-VAD  358 (423)
T ss_dssp             HHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HTTTTSSEEEC--C-CSBSSCEEEEESSS-CHH
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCcCCCceEEe--C-CCccEEEEEECCCC-cHH
Confidence            4433322    1    111222333344444444331          11111 11111  1 12466788888643 356


Q ss_pred             HHHhhcCcceeccCC-CCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          314 HVVETTKYFSITVSF-GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       314 ~l~~~l~~~gi~~~~-G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      .+.+.+...|+.+.+ |..+..-                  ....++++|||++.   +++++.++.|.+++++
T Consensus       359 ~~~~~l~~~gv~v~~~g~~~~~~------------------~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  414 (423)
T 3ez1_A          359 RVVKLAEAAGVSLTPAGATYPAG------------------QDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRL  414 (423)
T ss_dssp             HHHHHHHHTTEECCCTTTTSSTT------------------CCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcEEecCcccccCC------------------CCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            777777788998887 4432100                  01136789999974   7778888888888765

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.94  E-value=4.1e-25  Score=207.82  Aligned_cols=167  Identities=14%  Similarity=0.111  Sum_probs=127.3

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcC----CCceEE--eCcHHHHHHHHH-H---hcCCCCEEEecCCCCCcHHHHHh
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FTSGMAALAAVT-H---LLGTGEEIVAGDDLYGGTDRLLS  111 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~~gt~al~~~~-~---~~~~g~~Vlv~~~~~~~~~~~~~  111 (386)
                      .....|... |.+ +++++.+++...+|    .++.++  +++|+++++.+. .   ++++||+|++++|+|.++.    
T Consensus        62 ~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~----  137 (401)
T 7aat_A           62 KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHT----  137 (401)
T ss_dssp             TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHH----
T ss_pred             ccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHH----
Confidence            356678776 776 78888888876655    445544  666679987443 3   3489999999999999986    


Q ss_pred             hhcccCCcEEEEeCCC-------CHHHHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCC
Q 016612          112 RVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       112 ~~~~~~g~~~~~v~~~-------d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~  178 (386)
                      ..++..|.+++.++..       |++++++.+.   ++++++++++||||||.+.+   +++|+++|+++|+++|+||+|
T Consensus       138 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay  217 (401)
T 7aat_A          138 PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY  217 (401)
T ss_dssp             HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             HHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEcccc
Confidence            4455678888888752       6776665553   67899999999999999875   788999999999999999998


Q ss_pred             CCCCccCC-----------CCCCccEEEeccccccccCCCceEEEEEE
Q 016612          179 MSPVLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVLAV  215 (386)
Q Consensus       179 ~~~~~~~~-----------~~~~~di~~~S~sK~~~g~~g~~~G~i~~  215 (386)
                      ........           ...+.++++.|+||.+ |.+|+|+||+++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~RiG~l~~  264 (401)
T 7aat_A          218 QGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAFTV  264 (401)
T ss_dssp             TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEE
T ss_pred             ccccCCCccccHHHHHHHHhcCCcEEEEecCCccc-ccccCceEEEEE
Confidence            75433211           1235679999999999 566899999887

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.94  E-value=5.7e-25  Score=207.88  Aligned_cols=303  Identities=15%  Similarity=0.129  Sum_probs=191.5

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCC-----EEEec-CCCCCcHHHHHhh-
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGE-----EIVAG-DDLYGGTDRLLSR-  112 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~-----~Vlv~-~~~~~~~~~~~~~-  112 (386)
                      ..|... |.+ +++++.+++.+.+|.    ++++++++|++++++ +..++++||     +|+++ .|+|+++...+.. 
T Consensus        69 ~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~  148 (417)
T 3g7q_A           69 CNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLED  148 (417)
T ss_dssp             HSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----
T ss_pred             eccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccch
Confidence            357766 654 777788877766553    356677777899975 555788887     89997 9999887533211 


Q ss_pred             -hcccCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCC
Q 016612          113 -VTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (386)
Q Consensus       113 -~~~~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~  182 (386)
                       .....+..+..++..      |+++++  ++++++++++++|+||||.+.+   +++|.++|++||+++|+|++|+.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~  226 (417)
T 3g7q_A          149 DLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPF  226 (417)
T ss_dssp             CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTT
T ss_pred             hhhccccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccc
Confidence             122344556555532      778887  6788999999999999999998   8999999999999999999997422


Q ss_pred             c----c--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC--cHHH--
Q 016612          183 L----S--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK--TMAL--  252 (386)
Q Consensus       183 ~----~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--  252 (386)
                      .    .  .+...+.++++.|+|| + +.+|+|+||++++ +++.+.+...........++..+.++...+.  .+..  
T Consensus       227 ~~~~~~~~~~~~~~~~i~~~s~sK-~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  303 (417)
T 3g7q_A          227 PGIIFSEARPLWNPNIILCMSLSK-L-GLPGSRCGIIIAN-DKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLS  303 (417)
T ss_dssp             TCCBCSCCCCCCCTTEEEEEESGG-G-TCTTSCCEEEECC-HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccccccCCCCCEEEEEechh-c-cCCCcceEEEEeC-HHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHH
Confidence            1    1  1222467899999999 5 5568999999986 5566666655554444445544444433221  1111  


Q ss_pred             ---HHHHHHHHHHHHHHHHhhC-CCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccC
Q 016612          253 ---RVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVS  327 (386)
Q Consensus       253 ---~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~  327 (386)
                         ..+.+.++.+.+.+.+.+. +.        +    ++.+.   .+..+.++++.++. ......+.+.+...|+.+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~l~~--------~----~~~~~---~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~  368 (417)
T 3g7q_A          304 ETVIKPFYYQRVQQTIAIIRRYLSE--------E----RCLIH---KPEGAIFLWLWFKDLPITTELLYQRLKARGVLMV  368 (417)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHCCT--------T----TCEEE---CCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc--------C----Cceee---CCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEE
Confidence               2233445555566666542 21        0    11111   12235677777754 3346677777777889888


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      +|..+..-    .  ....        +..++++|||++.  +++++.++.|.+++++
T Consensus       369 ~g~~f~~~----~--~~~~--------~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~  412 (417)
T 3g7q_A          369 PGHYFFPG----L--DKPW--------PHTHQCMRMNYVPEPDKIEAGVKILAEEIER  412 (417)
T ss_dssp             EGGGGCTT----B--SSCC--------GGGGGEEEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhCCC----C--cccc--------ccCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            77653210    0  0000        0014679999975  5677788888887764

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.94  E-value=1.2e-25  Score=208.39  Aligned_cols=285  Identities=15%  Similarity=0.145  Sum_probs=187.5

Q ss_pred             chHHHHHHHHHhhcCCC----ceEEeCcHHHHHHH-HHHhcCCCCEEEecC-CCCCcHHHHHhhhcccCCcEEEEeCC--
Q 016612           55 PTRDALESLLAKLDKAD----RALCFTSGMAALAA-VTHLLGTGEEIVAGD-DLYGGTDRLLSRVTPKTGVVVKRVNT--  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~----~~i~~~~gt~al~~-~~~~~~~g~~Vlv~~-~~~~~~~~~~~~~~~~~g~~~~~v~~--  126 (386)
                      +...++++.+++++|.+    +.+++++|++++.+ +.+++++||+|++.+ +.|++..   ...++..|.+++.++.  
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~  113 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCGE  113 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCCC
Confidence            56788999999999843    36677778899874 555778999988765 5554422   2445566888887775  


Q ss_pred             ---CCHHHHHhhhCC--CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC-CCCCCccEEEecccc
Q 016612          127 ---CDLDEVASAIGP--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATK  200 (386)
Q Consensus       127 ---~d~~~l~~~~~~--~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~~~di~~~S~sK  200 (386)
                         .|++++++++++  ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.... ....+.|++++|+||
T Consensus       114 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K  193 (366)
T 1m32_A          114 VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANK  193 (366)
T ss_dssp             TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSS
T ss_pred             CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcc
Confidence               388999998874  58899999999999999999999999999999999999998765432 223468999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHh------------h---hh-c--CCCCChhhHHHHHhcCCcH------HHHHHH
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFL------------Q---NA-E--GSGLAPFDCWICLRGVKTM------ALRVEK  256 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~------------~---~~-~--~~~~~~~~~~~~~~~~~~~------~~~~~~  256 (386)
                      +++++.|  +|+++++++ +.+.+...            .   .. .  ....+.....++..+++.+      ....++
T Consensus       194 ~~~~~~g--~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~  270 (366)
T 1m32_A          194 CIQGVPG--FAFVIAREQ-KLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQR  270 (366)
T ss_dssp             TTCCCSS--EEEEEEEHH-HHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccCCCc--eEEEEECHH-HHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHH
Confidence            9877766  599998754 43322110            0   00 0  1123333333333333322      233444


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhcCcceeccCCCCcccc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSL  334 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~~G~~~~~  334 (386)
                      ..++.+.+.+.|++..         +.      ++.......+.++++.+++  .....++.+.+...|+.+.+|..+  
T Consensus       271 ~~~~~~~l~~~L~~~~---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~--  333 (366)
T 1m32_A          271 YQQNQRSLVAGMRALG---------FN------TLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS--  333 (366)
T ss_dssp             HHHHHHHHHHHHHHTT---------CC------BSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCS--
T ss_pred             HHHHHHHHHHHHHHCC---------Ce------eccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCC--
Confidence            5555666666665431         11      1100001124478888763  334667777777778877665431  


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          335 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       335 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                                            .++++|++++.    ++++++++.|++++++.
T Consensus       334 ----------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  365 (366)
T 1m32_A          334 ----------------------QSDCFRIGNIGEVYAADITALLTAIRTAMYWT  365 (366)
T ss_dssp             ----------------------SSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             ----------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence                                  25679999974    56666777777666543

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.93  E-value=8.7e-25  Score=208.39  Aligned_cols=306  Identities=14%  Similarity=0.116  Sum_probs=195.6

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcHHHHHHH-HHHhcCCCC--------------EEEec-CCCCC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAA-VTHLLGTGE--------------EIVAG-DDLYG  104 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~gt~al~~-~~~~~~~g~--------------~Vlv~-~~~~~  104 (386)
                      ..|... |.+ +++++.+++.+.+|.    ++++++++|++++++ +..++++||              +|+++ .|+|+
T Consensus        77 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~  156 (444)
T 3if2_A           77 ANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYI  156 (444)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCG
T ss_pred             hccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCcc
Confidence            457766 665 788888888766543    356777777899975 455778887              78775 89998


Q ss_pred             cHHHHHh--hhcccCCcEEEEeCC----------CCHHHHHhh---hCCCceEEEEeCCCCCCccccc---HHHHHHHHH
Q 016612          105 GTDRLLS--RVTPKTGVVVKRVNT----------CDLDEVASA---IGPWTKLVWVESPTNPRQQICD---IRKIAEMAH  166 (386)
Q Consensus       105 ~~~~~~~--~~~~~~g~~~~~v~~----------~d~~~l~~~---~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~  166 (386)
                      ++.....  ..+...|..++.++.          .|+++|+++   +++++++|++++|+||||.+.+   +++|.++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~  236 (444)
T 3if2_A          157 GYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAK  236 (444)
T ss_dssp             GGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             chhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHH
Confidence            8742110  034566777777662          389999988   6789999999999999999998   889999999


Q ss_pred             HcCCEEEEeCCCCCCCc----c--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhH
Q 016612          167 AHGALLLVDNSIMSPVL----S--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (386)
Q Consensus       167 ~~~~~li~D~a~~~~~~----~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (386)
                      ++|+++|+|++|+.+..    .  .+...+.+++++|+||+  +.+|+|+||++++ +.+.+.+.......+...++..+
T Consensus       237 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~--~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~~  313 (444)
T 3if2_A          237 RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI--GLPGMRTGIIVAD-AKVIEAVSAMNAVVNLAPTRFGA  313 (444)
T ss_dssp             HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT--TCGGGCCEEEECC-HHHHHHHHHHHHHHHSSCCCHHH
T ss_pred             HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc--cCCCCceEEEEEC-HHHHHHHHHHHHhccCCCChHHH
Confidence            99999999999974321    1  11224678999999996  4457899999986 55666565554433333344444


Q ss_pred             HHHHhcCCc--HHH-----HHHHHHHHHHHHHHHHhhC-CCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHh
Q 016612          241 WICLRGVKT--MAL-----RVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LAL  311 (386)
Q Consensus       241 ~~~~~~~~~--~~~-----~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~  311 (386)
                      .++...+..  +..     ..+.+.++.+.+.+.+.+. +.+            ++.+.   .+..+.++++.++. ...
T Consensus       314 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------------~~~~~---~~~~g~~~~~~~~~~~~~  378 (444)
T 3if2_A          314 AIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDY------------PLMIH---KPEGAIFLWLWFKDLPIS  378 (444)
T ss_dssp             HHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSS------------SEEEE---CCCBSSEEEEEETTCSSC
T ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC------------CceEe---cCCccEEEEEEcCCCCCC
Confidence            433332221  111     1223444555555555542 211            11111   11235677777754 334


Q ss_pred             HHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          312 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       312 ~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      ...+.+.+...|+.+.+|..+..- .+   ... .        ...+++||||++.  +++++.++.|.+++++
T Consensus       379 ~~~l~~~l~~~gi~v~~g~~~~~~-~~---~~~-~--------~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~  439 (444)
T 3if2_A          379 TLDLYERLKAKGTLIVPSEYFFPG-VD---VSD-Y--------QHAHECIRMSIAADEQTLIDGIKVIGEVVRE  439 (444)
T ss_dssp             HHHHHHHHHHTTEECEEGGGSCTT-CC---CTT-C--------SGGGSEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCeEEecchhhcCC-CC---Ccc-c--------ccCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            667777777789988877653210 00   000 0        0013679999975  6677778888877754

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.93  E-value=2.8e-24  Score=201.44  Aligned_cols=305  Identities=17%  Similarity=0.168  Sum_probs=204.2

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .+...++++.+++++|.++.+++++|++|+. ++.++ +++||+|++++++|+++..    .++..|.+++.++.+    
T Consensus        55 ~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~  130 (391)
T 3dr4_A           55 GRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASAN----SVTYCGATPVLVDNDPRTF  130 (391)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHH----HHHHCCCEEEEEecCcccc
Confidence            3578899999999999999999999999987 45556 7999999999999999864    445678999988865    


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC--CCCccEEEeccc--cc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSAT--KF  201 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~--~~~~di~~~S~s--K~  201 (386)
                        |++++++.+++++++|+   ++||||.+.|+++|.++|+++|+++|+|++|+.+......  ..-.|+++.|++  |+
T Consensus       131 ~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~  207 (391)
T 3dr4_A          131 NLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAI  207 (391)
T ss_dssp             SBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSS
T ss_pred             CcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCc
Confidence              88999999998999888   6789999999999999999999999999999876643222  122478888855  99


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhcC--------------CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEG--------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF  267 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  267 (386)
                      +++  | ++|+++.+++.+.+.+........              ..+....+.+....+..+....++..++.+.+.+.
T Consensus       208 l~~--g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~  284 (391)
T 3dr4_A          208 ITT--G-EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQK  284 (391)
T ss_dssp             SCC--B-SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCc--C-CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            854  2 479998887777666655443221              23344444444444444555556666666677777


Q ss_pred             HhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhcCcceeccCCCCcccccccccccc--C
Q 016612          268 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMS--H  343 (386)
Q Consensus       268 l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~--~  343 (386)
                      +.+. .+. ........         .......++++.+++  ....+++.+.+...|+.+++|... ..+.|.+..  .
T Consensus       285 L~~~-g~~-~~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p-~~~~~~~~~~~~  352 (391)
T 3dr4_A          285 LARL-GNR-VTKPHVAL---------TGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHP-MHIMPPYAHLAT  352 (391)
T ss_dssp             HGGG-TTS-EECCCCCT---------TSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCC-GGGSGGGGGGCC
T ss_pred             hhcC-Ccc-ccCcCCCC---------CCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCc-cccChhhhhcCc
Confidence            7654 211 11100000         001223456777654  334667888887788887766421 222332211  1


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          344 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       344 ~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ..++.....    ....+|++++....++.++.+.++|+++
T Consensus       353 ~~~~~~~~~----~~~~lrl~~~~~~t~edi~~~~~~l~~~  389 (391)
T 3dr4_A          353 DDLKIAEAC----GVDGLNLPTHAGLTEADIDRVIAALDQV  389 (391)
T ss_dssp             TTCHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHHTT
T ss_pred             CCChHHHHH----HhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence            222222111    1356999998777777777777777654

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.93  E-value=3.9e-25  Score=214.84  Aligned_cols=165  Identities=18%  Similarity=0.226  Sum_probs=127.4

Q ss_pred             CC-CCc-hHHHHHHHHHhhcCC-------CceEEeCcHHHHHHHH-HH-----hcCCCCEEEecCCCCCcHHHHHhhhcc
Q 016612           51 RS-GNP-TRDALESLLAKLDKA-------DRALCFTSGMAALAAV-TH-----LLGTGEEIVAGDDLYGGTDRLLSRVTP  115 (386)
Q Consensus        51 ~~-g~~-~~~~l~~~l~~~~g~-------~~~i~~~~gt~al~~~-~~-----~~~~g~~Vlv~~~~~~~~~~~~~~~~~  115 (386)
                      +. |.+ +++++.+.+.+.++.       ++.+++++|++++..+ .+     ++++||+|++++|+|.++.    ..++
T Consensus       136 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~----~~~~  211 (533)
T 3f6t_A          136 PDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL----RIPE  211 (533)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHH----TSGG
T ss_pred             CcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHH----HHHH
Confidence            44 665 788888888766232       2455555556998754 44     6899999999999998874    5666


Q ss_pred             cCCcEEEEeCCC---------CHHHHHhhhCCCceEEEEeCCCCCCcccccHH---HHHHHHH-HcCCEEEEeCCCCCCC
Q 016612          116 KTGVVVKRVNTC---------DLDEVASAIGPWTKLVWVESPTNPRQQICDIR---KIAEMAH-AHGALLLVDNSIMSPV  182 (386)
Q Consensus       116 ~~g~~~~~v~~~---------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~---~i~~la~-~~~~~li~D~a~~~~~  182 (386)
                      ..|.+++.++..         |++++++.+++++++|++++|+||||.+.+.+   +|+++|+ ++|+++|+|++|+...
T Consensus       212 ~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~  291 (533)
T 3f6t_A          212 LKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFV  291 (533)
T ss_dssp             GGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGS
T ss_pred             HcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccc
Confidence            778888877753         89999999999999999999999999998754   8888888 5899999999987432


Q ss_pred             cc--CC--CCCCccEEEeccccccccCCCceEEEEEEcChhH
Q 016612          183 LS--RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       183 ~~--~~--~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      ..  ..  ...+.+++++|+||.+ |++|+|+||++++++.+
T Consensus       292 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~~~  332 (533)
T 3f6t_A          292 PNFKSIYSVVPYNTMLVYSYSKLF-GCTGWRLGVIALNEKNV  332 (533)
T ss_dssp             TTCCCHHHHSGGGEEEEEESHHHH-TCGGGCEEEEEEESSCH
T ss_pred             cCccCHhhcCCCCEEEEecCcccC-CCcccceEEEEECcHHH
Confidence            21  11  1125679999999999 56689999999987633

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.93  E-value=4.1e-25  Score=207.18  Aligned_cols=278  Identities=15%  Similarity=0.158  Sum_probs=185.8

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHhcC----------CCCEEEecCCCCCcHHHHHhhhccc------
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLG----------TGEEIVAGDDLYGGTDRLLSRVTPK------  116 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~~~----------~g~~Vlv~~~~~~~~~~~~~~~~~~------  116 (386)
                      .+.+.++++++++++|.++.++++||++|+.+ +..+..          .||+|++..++|++...........      
T Consensus        77 ~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  156 (392)
T 3ruy_A           77 SDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRG  156 (392)
T ss_dssp             ETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence            45899999999999998889999999999874 433332          3679999999997664332222111      


Q ss_pred             ---CCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc----
Q 016612          117 ---TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS----  184 (386)
Q Consensus       117 ---~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----  184 (386)
                         ....+..++..|++++++++++++++|++++++||||.+.|    +++|.++|++||+++|+||+|+ .+...    
T Consensus       157 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~  236 (392)
T 3ruy_A          157 FGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFA  236 (392)
T ss_dssp             CCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSG
T ss_pred             cCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchh
Confidence               01236667777999999999999999999999999999998    9999999999999999999995 22211    


Q ss_pred             -CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHH
Q 016612          185 -RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDN  260 (386)
Q Consensus       185 -~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  260 (386)
                       +......|++  |+||+++|  | +|+|++++++ ++.+.+...........++..+.++...++.+.  ...++..++
T Consensus       237 ~~~~~~~~d~~--~~SK~l~g--G~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  311 (392)
T 3ruy_A          237 CDWDNVTPDMY--ILGKALGG--GVFPISCAAANR-DILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQL  311 (392)
T ss_dssp             GGGGTCCCSEE--EECGGGGT--TTSCCEEEEECH-HHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             hhccCCCCCEE--EEchhhhC--ChhhhEEEEECH-HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence             1112345776  55799865  5 7899999874 454444333333344566666666655554332  122333444


Q ss_pred             HHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          261 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       261 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      .+.+.+.+++..         .   +..    ....+.+.++++.++.  ...++.+.+...|+.+++|.          
T Consensus       312 ~~~l~~~L~~~~---------~---~~~----~~~~~~g~~~~~~~~~--~~~~l~~~l~~~gi~v~~~~----------  363 (392)
T 3ruy_A          312 GEKLVGQLKEID---------N---PMI----TEVRGKGLFIGIELNE--PARPYCEQLKAAGLLCKETH----------  363 (392)
T ss_dssp             HHHHHHHHTTCC---------C---TTE----EEEEEETTEEEEEESS--CSHHHHHHHHTTTEECCCBT----------
T ss_pred             HHHHHHHHHHhc---------C---CCc----eEEEeeeeEEEEEEcc--hHHHHHHHHHHCCcEEecCC----------
Confidence            444444444321         0   111    1113357888888865  35667777777788776543          


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  381 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  381 (386)
                                       ++++|++++.    ++++++++.|++++
T Consensus       364 -----------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          364 -----------------ENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             -----------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             -----------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence                             3559999653    66666777776665

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.93  E-value=2.2e-25  Score=205.44  Aligned_cols=281  Identities=19%  Similarity=0.205  Sum_probs=182.6

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC----CC
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CD  128 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~d  128 (386)
                      .+...++++.+++++|.++.+++++|++++. ++.+++++||+|++++|+|.++... ...+...|.+++.+..    .|
T Consensus        37 ~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~d  115 (347)
T 1jg8_A           37 DPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEV-GAMAVLSGVMPHPVPGKNGAMD  115 (347)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSST-THHHHHTCCEEEEECEETTEEC
T ss_pred             ChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccc-cchhhccCeEEEEecCCCCccC
Confidence            3567789999999999998999999998875 5566789999999999998654311 0134557888887721    28


Q ss_pred             HHHHHhhhCC------CceEEEEeCCCCCC-ccccc---HHHHHHHHHHcCCEEEEeCCCCCCC---cc-CC--CCCCcc
Q 016612          129 LDEVASAIGP------WTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMSPV---LS-RP--LELGAD  192 (386)
Q Consensus       129 ~~~l~~~~~~------~~~~v~~~~~~npt-G~~~~---l~~i~~la~~~~~~li~D~a~~~~~---~~-~~--~~~~~d  192 (386)
                      ++++++++++      ++++|++++|+||| |.+.|   +++|.++|+++|+++|+|+++..+.   .. +.  ...+.|
T Consensus       116 ~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d  195 (347)
T 1jg8_A          116 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYAD  195 (347)
T ss_dssp             HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCS
T ss_pred             HHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhccccc
Confidence            9999999875      68999999999999 99876   5789999999999999999874321   11 11  112578


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCC--CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhh
Q 016612          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       193 i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  270 (386)
                      .++.|+||+++++.   +++++.+ +++.+.+.......+.+  .+...+.+...+++....++.+..++.+.+.+.|++
T Consensus       196 ~~~~s~sK~l~~~~---G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  271 (347)
T 1jg8_A          196 SVMFCLSKGLCAPV---GSVVVGD-RDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKE  271 (347)
T ss_dssp             EEEEESSSTTCCSS---CEEEEEC-HHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccccCCCc---eEEEEcC-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88889999996542   4566655 55555444433322222  222333322222211111223333455666666654


Q ss_pred             CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHH
Q 016612          271 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  349 (386)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~  349 (386)
                      ..         +.      +...  +..++++++.++. .....++.+.+...|+.+++++                   
T Consensus       272 ~~---------~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~-------------------  315 (347)
T 1jg8_A          272 IG---------YS------VNPE--DVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVS-------------------  315 (347)
T ss_dssp             HT---------CB------CCGG--GCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEE-------------------
T ss_pred             cC---------ce------eccC--CCcceEEEEEcccccCCHHHHHHHHHHCCCEEecCC-------------------
Confidence            31         11      0000  1246778888753 2235677777777788765321                   


Q ss_pred             HHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          350 VRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       350 ~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                              ++++|++++    .++++++++.|++++++
T Consensus       316 --------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          316 --------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             --------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             --------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence                    345999985    37777788888777654

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.93  E-value=1.6e-24  Score=205.04  Aligned_cols=172  Identities=18%  Similarity=0.122  Sum_probs=132.5

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcC----CC--ceEEeCcHHHHHHHH---HHhcCCCCEEEecCCCCCcHHHHHhhh
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDK----AD--RALCFTSGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLSRV  113 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~--~~i~~~~gt~al~~~---~~~~~~g~~Vlv~~~~~~~~~~~~~~~  113 (386)
                      ....|... |.+ +++++.+++....+    .+  +.+++++|++++.++   ++++++||+|++++|+|.++.    ..
T Consensus        84 ~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~----~~  159 (420)
T 4f4e_A           84 LPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHR----AL  159 (420)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHH----HH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHH----HH
Confidence            44567776 775 78888888876654    33  445556667998754   456899999999999999885    44


Q ss_pred             cccCCcEEEEeCC----C---CHHHHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          114 TPKTGVVVKRVNT----C---DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       114 ~~~~g~~~~~v~~----~---d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      ++..|.+++.++.    .   |++++++.++   ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|+.
T Consensus       160 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~  239 (420)
T 4f4e_A          160 FDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQG  239 (420)
T ss_dssp             HHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred             HHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccccc
Confidence            5577888888876    2   8999999987   67899999999999999975   77899999999999999999864


Q ss_pred             CCccC----------CCCCCccEEEeccccccccCCCceEEEEEE--cChhHH
Q 016612          181 PVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAV--KGERLA  221 (386)
Q Consensus       181 ~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~--~~~~~~  221 (386)
                      ..+..          ....+.++++.|+||.+ |++|+|+||+++  +++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~  291 (420)
T 4f4e_A          240 FGESIEADAAAVRLFAAANLNVFVSSSFSKSF-SLYGERVGALSIITDSKDEA  291 (420)
T ss_dssp             SSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCEEEEEEECSSHHHH
T ss_pred             ccCCcchhhHHHHHHHhcCCCEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHH
Confidence            43320          01235689999999999 566899999864  344443

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.88  E-value=6.5e-28  Score=226.30  Aligned_cols=297  Identities=13%  Similarity=0.139  Sum_probs=190.4

Q ss_pred             CccccCCCCchHHHHHHHHHhhcC--C--CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           46 PYDYTRSGNPTRDALESLLAKLDK--A--DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~g--~--~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      ...|...-.++++++.+++.+.+|  .  ++.+++++|++++. ++..++++||+|++++|.|+++.    ..++..|.+
T Consensus        61 ~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~  136 (392)
T 3b1d_A           61 VYGYTYASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFA----RSVRLNNRK  136 (392)
Confidence            445554422367777777777766  2  34555555568987 45557889999999999999885    455677888


Q ss_pred             EEEeCC--------CCHHHHHhhhC-CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          121 VKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       121 ~~~v~~--------~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                      ++.++.        .|++++++.++ +++++|++++|+||||.+.+   +++|.++|+++|+++|+||+|+.....    
T Consensus       137 ~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~  216 (392)
T 3b1d_A          137 LVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEH  216 (392)
Confidence            877765        26788888887 68899999999999999986   899999999999999999998753221    


Q ss_pred             -CCC---C--CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcC-CCCChhhHHHHHhcCCcHHHHHHHH
Q 016612          185 -RPL---E--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRGVKTMALRVEKQ  257 (386)
Q Consensus       185 -~~~---~--~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  257 (386)
                       ...   .  .+.++++.|+||++ +.+|+|+|+++++++.+.+.+.......+ ...++..+.++...++..       
T Consensus       217 ~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------  288 (392)
T 3b1d_A          217 VSFNTVSPDFKDFALVLSSATKTF-NIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG-------  288 (392)
Confidence             111   1  35679999999999 44578999999876656655544433332 123444444433333311       


Q ss_pred             HHHHHHHHHHHhhCCCcceEecCCCCC-CCchhhhhhccCCCCceE-EEEeCCH-HhHHHHHhhcC-cceeccCCCCccc
Q 016612          258 QDNAQKIAEFLASHPRVKKVNYAGLPE-HPGHELHYSQAKGAGSVL-SFLTGSL-ALSKHVVETTK-YFSITVSFGSVKS  333 (386)
Q Consensus       258 ~~~~~~l~~~l~~~~~~~~~~~~~l~~-~~~~~i~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~l~-~~gi~~~~G~~~~  333 (386)
                      .+..+.+.+.+.+..   +.+...+.. ++++.+.    .+.++++ ++.++.. .....+.+.+. ..|+.+.+|..+.
T Consensus       289 ~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~  361 (392)
T 3b1d_A          289 KPWLVALKAVLEENI---QFAVEYFAQEAPRLKVM----KPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYG  361 (392)
Confidence            111222222222222   223333443 3444332    2234444 4566432 23556777774 6788887766421


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHh
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALR  382 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~  382 (386)
                                           ...++++||+++  .+++++.++.|+++++
T Consensus       362 ---------------------~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          362 ---------------------SEGELHARLNIAAPKSLVEEICKRIVCCLP  391 (392)
Confidence                                 012567999986  4778888888877765

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.93  E-value=1.3e-24  Score=204.35  Aligned_cols=302  Identities=19%  Similarity=0.214  Sum_probs=193.6

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      +...++++.+++++|.++.+++++|++++.. +.++ +++||+|+++.|+|+++..    .++..|.+++.++.+     
T Consensus        63 ~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~  138 (399)
T 2oga_A           63 PELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWL----AVSATGATPVPVEPHEDHPT  138 (399)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEECBCSSSSS
T ss_pred             hhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHH----HHHHCCCEEEEEecCCCCCC
Confidence            5678899999999999889999999999874 5556 7899999999999998763    445678898888752     


Q ss_pred             -CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCC--ccEEEecc--cccc
Q 016612          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSA--TKFI  202 (386)
Q Consensus       128 -d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~--~di~~~S~--sK~~  202 (386)
                       |++++++.+++++++|+   ++||||.+.|+++|.++|+++|+++|+|++|+.+...+....+  .|++++|+  +|++
T Consensus       139 ~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~  215 (399)
T 2oga_A          139 LDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNL  215 (399)
T ss_dssp             BCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSS
T ss_pred             cCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccC
Confidence             78999999988898887   6789999999999999999999999999999876533222223  69999999  6999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhc----------C--CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhh
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAE----------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  270 (386)
                      + ++| ++|+++++++++.+.+.......          +  ...++...+++..+++.+....++..++.+.+.+.+++
T Consensus       216 ~-~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  293 (399)
T 2oga_A          216 G-CFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAG  293 (399)
T ss_dssp             C-CSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT
T ss_pred             C-cCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4 445 78999987667766665543321          1  23456666665555555544444445555555555544


Q ss_pred             CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccC----CCC
Q 016612          271 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH----ASI  346 (386)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~----~~~  346 (386)
                      .+              +..+..........++.+.+... ...++.+.+...|+.++.+........|.....    ..+
T Consensus       294 ~~--------------g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~  358 (399)
T 2oga_A          294 LP--------------GIGLPVTAPDTDPVWHLFTVRTE-RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSL  358 (399)
T ss_dssp             CT--------------TCBCCCCCTTEECCCSSEEEECS-SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSC
T ss_pred             CC--------------CccccCCCCCCcceeEEEEEECC-CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCC
Confidence            32              11111000001111112333211 245666666667887665431111101100000    000


Q ss_pred             CHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          347 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       347 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                      +....    ...+++||+++.    ++++++++.|+++++++
T Consensus       359 p~~~~----~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          359 PRAES----FARQVLSLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             HHHHH----HHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHH----HHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            00000    012569999964    67777777777777654

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.93  E-value=7.8e-25  Score=205.18  Aligned_cols=173  Identities=16%  Similarity=0.121  Sum_probs=130.1

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcCCC----c--eEEeCcHHHHHHHH-HHhcC--CCCEEEecCCCCCcHHHHHhh
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDKAD----R--ALCFTSGMAALAAV-THLLG--TGEEIVAGDDLYGGTDRLLSR  112 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~--~i~~~~gt~al~~~-~~~~~--~g~~Vlv~~~~~~~~~~~~~~  112 (386)
                      ...++|.+. |.+ +|+++.+++....+..    +  .+++++|++|+..+ ..+++  | |+|++++|+|+++.    .
T Consensus        63 ~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~----~  137 (405)
T 3k7y_A           63 YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHV----N  137 (405)
T ss_dssp             CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHH----H
T ss_pred             CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHH----H
Confidence            456789987 887 8999999887655432    2  24555556898754 44555  8 99999999999885    5


Q ss_pred             hcccCCcEEEEeCCC-------CHHHHHhhhC--CCceEEEEeCC-CCCCccccc---HHHHHHHHHHcCCEEEEeCCCC
Q 016612          113 VTPKTGVVVKRVNTC-------DLDEVASAIG--PWTKLVWVESP-TNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (386)
Q Consensus       113 ~~~~~g~~~~~v~~~-------d~~~l~~~~~--~~~~~v~~~~~-~nptG~~~~---l~~i~~la~~~~~~li~D~a~~  179 (386)
                      +++..|.+++.++..       |++++++.++  ++++++++++| |||||.+++   +++|+++|++||+++|+||+|.
T Consensus       138 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~  217 (405)
T 3k7y_A          138 MIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ  217 (405)
T ss_dssp             HHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT
T ss_pred             HHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc
Confidence            567899999998761       7899998886  46788888765 899999986   7789999999999999999986


Q ss_pred             CCCccC------C-----CCCCccEEEeccccccccCCCceEEEEEE--cChhHHH
Q 016612          180 SPVLSR------P-----LELGADIVMHSATKFIAGHSDVMAGVLAV--KGERLAK  222 (386)
Q Consensus       180 ~~~~~~------~-----~~~~~di~~~S~sK~~~g~~g~~~G~i~~--~~~~~~~  222 (386)
                      .-....      .     ...+..+++.|+||.| +.+|+|+||+++  .++++.+
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~~~~~  272 (405)
T 3k7y_A          218 GFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM-SLYGERAGALHIVCKNQEEKK  272 (405)
T ss_dssp             TTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS-CCTTTTEEEEEEECSSHHHHH
T ss_pred             cccCCCcccchHHHHHHHhcCCcEEEEeeCCccC-CCccccceEEEEEeCCHHHHH
Confidence            422210      0     1124679999999999 566899999864  4454443

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.93  E-value=1.8e-24  Score=204.12  Aligned_cols=254  Identities=19%  Similarity=0.200  Sum_probs=191.4

Q ss_pred             chHHHHHHHHHhhcCCCceEE---eCcHHHHHH-HHHHhcCCCCEEEecC-CCCCcHHHHHh------hhcccCCcEEEE
Q 016612           55 PTRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLLS------RVTPKTGVVVKR  123 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~---~~~gt~al~-~~~~~~~~g~~Vlv~~-~~~~~~~~~~~------~~~~~~g~~~~~  123 (386)
                      +.++++++.+++++|.+...+   ++||++|+. ++.+++++||+|++++ +.|+++...+.      ..++..|++++.
T Consensus        65 ~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~  144 (431)
T 3ht4_A           65 IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNA  144 (431)
T ss_dssp             HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEE
T ss_pred             hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEE
Confidence            468999999999999986555   789999987 5566899999999998 99998865432      345678999999


Q ss_pred             eCCC-----CHHHHHhhhCCCceEEEEeC-CCCCCccc---ccHHHHHHHHHH--cCCEEEEeCCCCCCCc-cCCCCCCc
Q 016612          124 VNTC-----DLDEVASAIGPWTKLVWVES-PTNPRQQI---CDIRKIAEMAHA--HGALLLVDNSIMSPVL-SRPLELGA  191 (386)
Q Consensus       124 v~~~-----d~~~l~~~~~~~~~~v~~~~-~~nptG~~---~~l~~i~~la~~--~~~~li~D~a~~~~~~-~~~~~~~~  191 (386)
                      ++.+     |++++++++++++++|++++ |+||+|..   .++++|.++|++  +|+++|+|++|+.+.. ..+...++
T Consensus       145 v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~  224 (431)
T 3ht4_A          145 VPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGA  224 (431)
T ss_dssp             CCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTC
T ss_pred             eCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccccCC
Confidence            9974     99999999999999999995 66666655   479999999999  9999999999987764 45666789


Q ss_pred             cEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCC----CCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Q 016612          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS----GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF  267 (386)
Q Consensus       192 di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  267 (386)
                      |++++|++|+++|..++.+|+++++ +++.+.+.......+.    +.+....+++..++..+..+.++..++++.+.+.
T Consensus       225 Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~  303 (431)
T 3ht4_A          225 DLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTAAF  303 (431)
T ss_dssp             SEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999877444556999987 5565555543332221    1222224555666666778888899999999999


Q ss_pred             HhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcce
Q 016612          268 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  323 (386)
Q Consensus       268 l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g  323 (386)
                      +++.+.  .+ .+. .+.          +..+.++++.+++.+...++++.+....
T Consensus       304 L~~~g~--~v-~p~-~~~----------~~~~li~~i~l~~~~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          304 LEKLGM--NT-SPA-WNA----------PRTDLIQSVQFDDKDRMIAFCQAIQYAS  345 (431)
T ss_dssp             HHHHTC--CE-ESC-TTS----------CCSSSCCEEECCCHHHHHHHHHHHHHTS
T ss_pred             HHhCcC--Ee-cCC-CCC----------CCccEEEEEEeCCHHHHHHHHHHHHhcC
Confidence            987652  11 222 221          2234578888888777888888887764

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.93  E-value=1e-23  Score=198.75  Aligned_cols=251  Identities=15%  Similarity=0.117  Sum_probs=160.8

Q ss_pred             ceeeccCCCCCC-CCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcC----CCce--EEeCcHHH
Q 016612           11 TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRA--LCFTSGMA   81 (386)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~--i~~~~gt~   81 (386)
                      ..+++++ .+++ -...++++.++..    +......+.|.+. |.+ +++++.+++....+    .++.  +.+.+|++
T Consensus        41 ~~~i~l~-~g~~~d~~~~~~v~~a~~----~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g  115 (409)
T 4eu1_A           41 KRKVNLS-IGVYRDDADQPFVLECVK----QATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG  115 (409)
T ss_dssp             SSCEECC-CSSCCCTTSCCCCCHHHH----TCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred             cCceeee-eeEEECCCCCEeecHHHH----hcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence            4678888 4454 2233444333211    1133455677765 665 66666666633222    2233  34677777


Q ss_pred             HHHHH----HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhC---CCceEEEEeC
Q 016612           82 ALAAV----THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVES  147 (386)
Q Consensus        82 al~~~----~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~---~~~~~v~~~~  147 (386)
                      ++.++    ..++++||+|++++|+|.++.    ..++..|.+++.++..       |++++++.++   ++++++++++
T Consensus       116 a~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~  191 (409)
T 4eu1_A          116 ALRIGGDLLNRFVANCNRIYGPDVGYPNHE----SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHAC  191 (409)
T ss_dssp             HHHHHHHHGGGTSSSCCEEEEESSCCTHHH----HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCcHhHH----HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECC
Confidence            77643    235689999999999999886    4556788999998861       7899999885   3566777799


Q ss_pred             CCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC----------C-CCCCccEEEeccccccccCCCceEEEE
Q 016612          148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----------P-LELGADIVMHSATKFIAGHSDVMAGVL  213 (386)
Q Consensus       148 ~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~----------~-~~~~~di~~~S~sK~~~g~~g~~~G~i  213 (386)
                      |+||||.+.+   +++|.++|+++|+++|+||+|+......          . ...+.++++.|+||.+ |.+|+|+||+
T Consensus       192 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~riG~~  270 (409)
T 4eu1_A          192 AHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNF-GLYGHRCGAL  270 (409)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTS-SCGGGCCEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccc-cCccCCceEE
Confidence            9999999987   5669999999999999999987543221          0 1224568999999999 5568999997


Q ss_pred             --EEcChh----HHHHHHHhhhhcCCCCChhhHHHHHhcCCc----------HHHHHHHHHHHHHHHHHHHhhC
Q 016612          214 --AVKGER----LAKELYFLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASH  271 (386)
Q Consensus       214 --~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~~  271 (386)
                        ++.+++    +.+.+...........+...+.++...+..          +....+.+.++.+.+.+.+++.
T Consensus       271 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (409)
T 4eu1_A          271 HISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC  344 (409)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              666666    444444443333334445555554443332          2223344445555555555543

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.93  E-value=2.1e-25  Score=210.07  Aligned_cols=320  Identities=16%  Similarity=0.167  Sum_probs=205.9

Q ss_pred             eeeccCCCC---CCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHH-H
Q 016612           12 LLMNFSNEF---DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV-T   87 (386)
Q Consensus        12 ~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~-~   87 (386)
                      ..+++. .+   .++|..+|.+.++......    .....+.....+...++++++++++|.++.+++++|++|+.++ .
T Consensus        40 ~~lD~~-~~~~~~~lg~~~p~v~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~  114 (406)
T 4adb_A           40 EYIDFA-GGIAVNALGHAHPELREALNEQAS----KFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALK  114 (406)
T ss_dssp             EEEESS-HHHHTCTTCBTCHHHHHHHHHHHT----TCSCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHH
T ss_pred             EEEECC-CchhhcccCCCCHHHHHHHHHHHH----hcccccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHH
Confidence            355665 33   6677755554443211111    1111112224467899999999999999889999999998754 4


Q ss_pred             HhcC-------CC-CEEEecCCCCCcHHHHHhhhc---------ccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCC
Q 016612           88 HLLG-------TG-EEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (386)
Q Consensus        88 ~~~~-------~g-~~Vlv~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~n  150 (386)
                      .++.       +| |+|++.+|.|+++........         ...+.++..++..|++++++++++++++|+++ |+|
T Consensus       115 ~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~n  193 (406)
T 4adb_A          115 LARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQ  193 (406)
T ss_dssp             HHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEE
T ss_pred             HHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCc
Confidence            4443       55 999999999988743322221         12234677788889999999999999999999 899


Q ss_pred             CCcccc-----cHHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChh
Q 016612          151 PRQQIC-----DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       151 ptG~~~-----~l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      |+|.+.     ++++|.++|++||++||+||+|+. +....     ......|++  |+||+++  +|+|+|+++++ ++
T Consensus       194 p~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~--~G~r~G~~~~~-~~  268 (406)
T 4adb_A          194 GEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG--GGFPVGALLAT-EE  268 (406)
T ss_dssp             TTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEEC-HH
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc--CCCCeEEEEEc-HH
Confidence            999875     589999999999999999999962 11111     112345776  5699996  47899999986 44


Q ss_pred             HHHHHHHhhhhcCCCCChhhHHHHHhcCCcH--HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCC
Q 016612          220 LAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  297 (386)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~  297 (386)
                      +.+.+...........++..+.++...++.+  ....+...++.+.+.+.+++...    ....          ....++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~----------~~~~~~  334 (406)
T 4adb_A          269 CARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINH----RYGL----------FSEVRG  334 (406)
T ss_dssp             HHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH----HHCC----------EEEEEE
T ss_pred             HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----hCCC----------ceEEEE
Confidence            5554443333333455666666555444322  33344555555566665554310    0000          011233


Q ss_pred             CCceEEEEeCCHH--hHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChH
Q 016612          298 AGSVLSFLTGSLA--LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVN  371 (386)
Q Consensus       298 ~~~~~~~~~~~~~--~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~  371 (386)
                      .+.++++.+.+..  ....+.+.+...|+.+.+++                           ++++|++++    .++++
T Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~---------------------------~~~iRi~~~~~~~~e~i~  387 (406)
T 4adb_A          335 LGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAG---------------------------GNVVRFAPALNVSEEEVT  387 (406)
T ss_dssp             ETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESS---------------------------TTEEEECCCTTCCHHHHH
T ss_pred             EEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecC---------------------------CCeEEEECCCCCCHHHHH
Confidence            5778888886532  46677777777788765432                           456999764    37788


Q ss_pred             HHHHHHHHHHhc
Q 016612          372 DLISDLDKALRT  383 (386)
Q Consensus       372 ~~i~~l~~~l~~  383 (386)
                      ++++.|++++++
T Consensus       388 ~~~~~l~~~l~~  399 (406)
T 4adb_A          388 TGLDRFAAACEH  399 (406)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888887764

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.93  E-value=6.3e-24  Score=202.50  Aligned_cols=327  Identities=14%  Similarity=0.065  Sum_probs=197.6

Q ss_pred             ceeeccCCCCCC-CCCcccceeeeeeeecCCC---CCCCCccccCC-CCc-hHHHHHHHHHhhcCCC-------ceEE--
Q 016612           11 TLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---TENGPYDYTRS-GNP-TRDALESLLAKLDKAD-------RALC--   75 (386)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~---~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-------~~i~--   75 (386)
                      ...++++ ...| -...++++.++......+.   .......|... |.+ +++++.+++.   |.+       +.++  
T Consensus        49 ~~~i~l~-~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~  124 (448)
T 3meb_A           49 PKKVNLG-VGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQ  124 (448)
T ss_dssp             TTCEEES-SCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEE
T ss_pred             CCeEEee-cccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEE
Confidence            4468888 4444 2233444444322110001   12445667765 765 5666666652   443       4555  


Q ss_pred             eCcHHHHHHH---HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC---C-----CHHHHHhhhC---CCce
Q 016612           76 FTSGMAALAA---VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C-----DLDEVASAIG---PWTK  141 (386)
Q Consensus        76 ~~~gt~al~~---~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~-----d~~~l~~~~~---~~~~  141 (386)
                      +++|++|+..   +.+++.+||+|++++|+|+++...+...++..|.+++.++.   .     |++++++.++   ++++
T Consensus       125 t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~  204 (448)
T 3meb_A          125 SLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSI  204 (448)
T ss_dssp             ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCE
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcE
Confidence            6777888854   34578899999999999998864443222277888888775   2     7899998886   4678


Q ss_pred             EEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC----C-------CCCCccEEEeccccccccCCC
Q 016612          142 LVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P-------LELGADIVMHSATKFIAGHSD  207 (386)
Q Consensus       142 ~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~----~-------~~~~~di~~~S~sK~~~g~~g  207 (386)
                      ++++++|+||||.+.+   +++|+++|+++|+++|+|++|.......    .       .....++++.|+||.+ |++|
T Consensus       205 ~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G  283 (448)
T 3meb_A          205 FLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF-GLYG  283 (448)
T ss_dssp             EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGG
T ss_pred             EEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccC-CCcc
Confidence            8889999999999986   6669999999999999999987433221    0       1123468899999999 5668


Q ss_pred             ceEEEE--EE--------cCh----hHHHHHHHhhhhcCCCCChhhHHHHHhcCCc----------HHHHHHHHHHHHHH
Q 016612          208 VMAGVL--AV--------KGE----RLAKELYFLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQK  263 (386)
Q Consensus       208 ~~~G~i--~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  263 (386)
                      +|+|++  ++        +++    .+.+.+...........+...+.++...+..          +....+++.++.+.
T Consensus       284 ~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~  363 (448)
T 3meb_A          284 ERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSL  363 (448)
T ss_dssp             GCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998  66        444    4444444444444445555555555544433          22223334444555


Q ss_pred             HHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccC
Q 016612          264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  343 (386)
Q Consensus       264 l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~  343 (386)
                      +.+.|++..      .++......+...  .  ..++++.|.--..+....+++   ..|+.+.+|.             
T Consensus       364 l~~~L~~~~------~~~~~~~~~~~~~--~--~~~g~~~~~~~~~~~~~~ll~---~~gV~v~~G~-------------  417 (448)
T 3meb_A          364 LHASLAKRK------TPGPGSKGTWDHI--L--TAIGMFTFTGLTPEHVDYLKE---KWSIYLVKAG-------------  417 (448)
T ss_dssp             HHHHHHHTT------CCCSTTTCCCTHH--H--HCCSSEEECCCCHHHHHHHHH---HHCEEECSGG-------------
T ss_pred             HHHHHHhhC------CCCcCccccccee--C--CCceEEEecCCCHHHHHHHHH---hCCEEEeCCC-------------
Confidence            555555431      0110000001121  1  123455553222333444433   3466555432             


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhcCC
Q 016612          344 ASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       344 ~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~~~  385 (386)
                                       .|||++   .++++++++.|++++++.+
T Consensus       418 -----------------gRis~a~~~~~~i~~~~~~l~~~l~~~~  445 (448)
T 3meb_A          418 -----------------GRMSMCGLTESNCDYVAEAIHDAVTKLP  445 (448)
T ss_dssp             -----------------GEEEGGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred             -----------------cEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence                             488885   4789999999999998764

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.93  E-value=3.5e-26  Score=219.28  Aligned_cols=294  Identities=10%  Similarity=0.074  Sum_probs=187.3

Q ss_pred             chHHHHHHHHHhhcCCC-c-eEEeCcHHHHHHH-HHHhcCCCC---EEEecCCCCCcHHHHHhhhcccCCcEE-----EE
Q 016612           55 PTRDALESLLAKLDKAD-R-ALCFTSGMAALAA-VTHLLGTGE---EIVAGDDLYGGTDRLLSRVTPKTGVVV-----KR  123 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~-~i~~~~gt~al~~-~~~~~~~g~---~Vlv~~~~~~~~~~~~~~~~~~~g~~~-----~~  123 (386)
                      +..+++++++++++|.+ + .++++++++++++ +.+++++|+   +|+++.|.|++....+...++..|.++     ..
T Consensus       111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~  190 (465)
T 3e9k_A          111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMI  190 (465)
T ss_dssp             GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEE
T ss_pred             HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEE
Confidence            36678999999999986 4 4555555699985 455666655   499999999997766666777778764     23


Q ss_pred             eCCC-----CHHHHHhhhC---CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCC-CCCCccEE
Q 016612          124 VNTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIV  194 (386)
Q Consensus       124 v~~~-----d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-~~~~~di~  194 (386)
                      ++.+     |+++++++++   +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..+.. ...++|++
T Consensus       191 ~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~  270 (465)
T 3e9k_A          191 KPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFA  270 (465)
T ss_dssp             CCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEE
T ss_pred             ecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEE
Confidence            3322     7999999996   6899999999999999999999999999999999999999998876422 24578999


Q ss_pred             Eeccccccc-cCCCceEEEEEEcChhHHHHHHHhhhh-------------------------cCCCCChhhHHHHHhcCC
Q 016612          195 MHSATKFIA-GHSDVMAGVLAVKGERLAKELYFLQNA-------------------------EGSGLAPFDCWICLRGVK  248 (386)
Q Consensus       195 ~~S~sK~~~-g~~g~~~G~i~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~  248 (386)
                      ++|+||++. ||.|  .|+++++++ +.+.+......                         .....+......+..+++
T Consensus       271 ~~s~~K~l~~gp~~--~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~  347 (465)
T 3e9k_A          271 CWCSYKYLNAGAGG--IAGAFIHEK-HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLE  347 (465)
T ss_dssp             EECSSSTTCCCTTC--CCEEEECGG-GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHH
T ss_pred             EECcccccccCCCc--eEEEEEcHH-HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHH
Confidence            999999995 5554  588888754 32211100000                         001222233333333333


Q ss_pred             c-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhc-cCCCCceEEEEeCCHHhHHHHHhhcCcc
Q 016612          249 T-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ-AKGAGSVLSFLTGSLALSKHVVETTKYF  322 (386)
Q Consensus       249 ~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~  322 (386)
                      .     +....++..++.+.+.+.+++...    ..+.+...+++.++.+. +..++++++|.++.  ....+.+.+...
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~--~~~~l~~~L~~~  421 (465)
T 3e9k_A          348 IFKQATMKALRKKSVLLTGYLEYLIKHNYG----KDKAATKKPVVNIITPSHVEERGCQLTITFSV--PNKDVFQELEKR  421 (465)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC-------------CEEECSCSSGGGBCSCEEEEECC--TTCCHHHHHHTT
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHhhcc----ccccccCCCCeEEeCCCCHhhcccEEEEEecC--CHHHHHHHHHHC
Confidence            2     223333444455555555554210    01112222333333221 23357889998852  234455555556


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-c----cCChHHHHHHHHHHHhcC
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~----~~~~~~~i~~l~~~l~~~  384 (386)
                      |+.+.++                           .++++|+|+ +    .++++++++.|++++++.
T Consensus       422 Gi~v~~~---------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          422 GVVCDKR---------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             TEECEEE---------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             CEEEecC---------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence            7765421                           246799998 3    477888888888888754

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.93  E-value=5e-24  Score=201.53  Aligned_cols=257  Identities=16%  Similarity=0.147  Sum_probs=176.7

Q ss_pred             ccCC-CCc-hHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           49 YTRS-GNP-TRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        49 y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      |+.. |.+ +++++++.+++++|.++.+++++|++++.. +.++ +++||+|+++.|+|+++...    ++..|.+++.+
T Consensus        34 ~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~  109 (418)
T 2c81_A           34 SGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATA----VLNVNALPVFV  109 (418)
T ss_dssp             TSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEE
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHH----HHHcCCEEEEE
Confidence            5554 665 799999999999999988999999999874 5556 78999999999999998643    45678898888


Q ss_pred             CCC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC-cc-CCCCCCccEEEe
Q 016612          125 NTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-LS-RPLELGADIVMH  196 (386)
Q Consensus       125 ~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~-~~-~~~~~~~di~~~  196 (386)
                      +.+      |++++++.+++++++|++   +||+|...++++|.++|+++|+++|+|++|+.+. +. .....-.|+++.
T Consensus       110 ~~~~~~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~  186 (418)
T 2c81_A          110 DVEADTYCIDPQLIKSAITDKTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAF  186 (418)
T ss_dssp             CBCTTTCSBCHHHHGGGCCTTEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEE
T ss_pred             ecCCCCCCcCHHHHHHhhCCCCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEE
Confidence            754      799999999888999885   4689999999999999999999999999998775 22 111112367777


Q ss_pred             cc--ccccccCCCceEEEEEEcChhHHHHHHHhhhhcC------------C--------------CCChhhHHHHHhcCC
Q 016612          197 SA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG------------S--------------GLAPFDCWICLRGVK  248 (386)
Q Consensus       197 S~--sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~------------~--------------~~~~~~~~~~~~~~~  248 (386)
                      |+  ||+++ + | ++|+++++++.+.+.+........            .              .+....+++....++
T Consensus       187 s~s~~K~~~-~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~  263 (418)
T 2c81_A          187 SCQQGKVLT-A-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQ  263 (418)
T ss_dssp             ECCTTSSSC-S-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHT
T ss_pred             eccCCcccC-C-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHH
Confidence            77  99995 4 5 799999876666655544332110            0              022233333334445


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCC--C-C-ceEEEEeCC----HHhHHHHHhhcC
Q 016612          249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG--A-G-SVLSFLTGS----LALSKHVVETTK  320 (386)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~--~-~-~~~~~~~~~----~~~~~~l~~~l~  320 (386)
                      .+....++..++.+.+.+.|.+.+.+              .+... +.+  . . .++.+.+++    ......+.+.+.
T Consensus       264 ~~~~~~~~~~~~~~~l~~~L~~~~g~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  328 (418)
T 2c81_A          264 ELDDKNAIREKNAMFLNDALSKIDGI--------------KVMKR-PPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILR  328 (418)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTSTTE--------------EECCC-CTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCc--------------ccCCC-CCCCcccccEEEEEEEccccccccCHHHHHHHHH
Confidence            55555666666677777777654321              11100 011  1 1 355566652    223567777777


Q ss_pred             cc-eec---cCCCC
Q 016612          321 YF-SIT---VSFGS  330 (386)
Q Consensus       321 ~~-gi~---~~~G~  330 (386)
                      .. |+.   ++.|.
T Consensus       329 ~~~gI~~~~v~~~~  342 (418)
T 2c81_A          329 EKLNMGTFYLHPPY  342 (418)
T ss_dssp             HHHTCCTTTEECCC
T ss_pred             HcCCCCcccccccc
Confidence            66 777   66554

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.93  E-value=1.8e-25  Score=209.40  Aligned_cols=297  Identities=15%  Similarity=0.108  Sum_probs=178.4

Q ss_pred             CCccccCC-CC-----c-hHHHHHHHHHhhcC----CCceEEeCcHH-HHHHH-HHHhcCCCC----EEEecCCCCCcHH
Q 016612           45 GPYDYTRS-GN-----P-TRDALESLLAKLDK----ADRALCFTSGM-AALAA-VTHLLGTGE----EIVAGDDLYGGTD  107 (386)
Q Consensus        45 ~~~~y~~~-g~-----~-~~~~l~~~l~~~~g----~~~~i~~~~gt-~al~~-~~~~~~~g~----~Vlv~~~~~~~~~  107 (386)
                      ....|... |.     + +++++.+++. ..|    .++.|++++|+ +++.. +.+++++||    +|++++|+|+++.
T Consensus        55 ~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~  133 (391)
T 3bwn_A           55 LMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYV  133 (391)
T ss_dssp             TCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHH
T ss_pred             hhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHH
Confidence            45678776 75     4 5666666554 223    23456666665 88874 555789999    9999999999886


Q ss_pred             HHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC-C
Q 016612          108 RLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-P  186 (386)
Q Consensus       108 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-~  186 (386)
                          ..++..|.+++.++.+ .+.++   .+++++|++++|+||||.+.+  +|++.+++++++||+|++|..+.... .
T Consensus       134 ----~~~~~~g~~~~~~~~d-~~~l~---~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~  203 (391)
T 3bwn_A          134 ----EETTYVRSGMYKWEGD-AWGFD---KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPIT  203 (391)
T ss_dssp             ----HHHHTTCBTTEEEEEE-STTCC---CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCC
T ss_pred             ----HHHHHcCCeEEEecCC-HHHcC---CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCccc
Confidence                4455677777666642 23332   367899999999999999986  45442222349999999997532211 1


Q ss_pred             CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC--------------cHHH
Q 016612          187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK--------------TMAL  252 (386)
Q Consensus       187 ~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  252 (386)
                      ...+.+++++|+||.+ |++|+|+||+++.++.+.+.+.........+.+...+.++...++              .+..
T Consensus       204 ~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~  282 (391)
T 3bwn_A          204 RRQDHDIMLFTFSKIT-GHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKY  282 (391)
T ss_dssp             CCBCCSEEEEEHHHHH-SCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHH
T ss_pred             cCCCCeEEEEechhhc-CCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHH
Confidence            1346789999999998 667899999998456676666555543334455555544433332              2333


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhh-hccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCc
Q 016612          253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY-SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSV  331 (386)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~  331 (386)
                      ..+.+.++.+.+.+.|++.+.   +......  .+...+. ...+..|.++++.+++.+...   +.+...|+.+.+|..
T Consensus       283 ~~~~~~~~~~~l~~~L~~~~~---~~~~~p~--~~~~~f~~~~~~~~g~~~~~~~~~~~~~~---~~l~~~gV~v~pg~~  354 (391)
T 3bwn_A          283 GREMMKNRWEKLREVVKESDA---FTLPKYP--EAFCNYFGKSLESYPAFAWLGTKEETDLV---SELRRHKVMSRAGER  354 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSS---EECCCCC--CEEETTTTEEECCCCSEEEEEESSSCCHH---HHHHHTTEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHhCCC---cccccCC--ccccccccccCCCcceEEEecCCcHHHHH---HHHHHCCEEEccCCC
Confidence            445556666667777766431   1111100  0000000 000112456778886433333   334445777777665


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          332 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                      +.                      ..++++|||++.  ++++++++.|++++++
T Consensus       355 fg----------------------~~~~~iRis~~~~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          355 CG----------------------SDKKHVRVSMLSREDVFNVFLERLANMKLI  386 (391)
T ss_dssp             GT----------------------CCTTEEEEESCSCHHHHHHHHHHHHSCC--
T ss_pred             CC----------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            21                      135789999974  4566777777666543

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.93  E-value=1.3e-24  Score=204.25  Aligned_cols=291  Identities=15%  Similarity=0.151  Sum_probs=175.5

Q ss_pred             CccccCC-CCchHHHHHHHHHhh--cC-CC--ceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc
Q 016612           46 PYDYTRS-GNPTRDALESLLAKL--DK-AD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (386)
Q Consensus        46 ~~~y~~~-g~~~~~~l~~~l~~~--~g-~~--~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~  119 (386)
                      ...|++. |.   .++++.++++  .| .+  +.++++++++++.++..++++||+|++++|+|+++..    .++..|.
T Consensus        68 ~~~y~~~~g~---~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~~~~~gd~Vl~~~p~y~~~~~----~~~~~g~  140 (400)
T 3asa_A           68 CRGYGPDFGL---PALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLD----IARLTGA  140 (400)
T ss_dssp             CCCCCCTTCC---HHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHHHHCSSCEEEEEESCCHHHHH----HHHHTTC
T ss_pred             ccCCCCCCCC---HHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHHHcCCCCEEEECCCCcHHHHH----HHHHcCC
Confidence            3456544 44   3566666665  46 33  4555566669998777778999999999999988763    3455677


Q ss_pred             E-EEEeCCCCHHHHHhhhC--CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc-----cCCCC
Q 016612          120 V-VKRVNTCDLDEVASAIG--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLE  188 (386)
Q Consensus       120 ~-~~~v~~~d~~~l~~~~~--~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~-----~~~~~  188 (386)
                      + ++.++.++...+...+.  +++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+....     .....
T Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~  220 (400)
T 3asa_A          141 KEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFE  220 (400)
T ss_dssp             SEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGG
T ss_pred             cceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhh
Confidence            7 77777642111111111  57899999999999999987   67789999999999999999873211     11112


Q ss_pred             C----CccEEEeccccccccCCCceEEEEEEcChh-------HHHHHHHhhhhcCCCCChhhHHHHHhcCC--cHHHHHH
Q 016612          189 L----GADIVMHSATKFIAGHSDVMAGVLAVKGER-------LAKELYFLQNAEGSGLAPFDCWICLRGVK--TMALRVE  255 (386)
Q Consensus       189 ~----~~di~~~S~sK~~~g~~g~~~G~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  255 (386)
                      .    +.++++.|+||++ |.+|+|+||++++++.       +...............+...+.++...++  .+....+
T Consensus       221 ~~~~~~~~i~~~s~sK~~-g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  299 (400)
T 3asa_A          221 IPDARFCAIEINSFSKPL-GFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIH  299 (400)
T ss_dssp             STTGGGTEEEEEECCGGG-TTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHH
T ss_pred             CCCCCCceEEEecchhhc-CCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHH
Confidence            2    3469999999999 5568999999987654       23322212211122344444443333221  1233345


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE-eCCHHhHHHHHhhcC-cceeccCCCCccc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGSLALSKHVVETTK-YFSITVSFGSVKS  333 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~-~~gi~~~~G~~~~  333 (386)
                      .+.++.+.+.+.+++.. + .             +.  . ...+.++++. ++......++.+.+. ..|+.+.+|..+.
T Consensus       300 ~~~~~~~~l~~~L~~~g-~-~-------------~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~  361 (400)
T 3asa_A          300 YYRENSDLLRKALLATG-F-E-------------VF--G-GEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFG  361 (400)
T ss_dssp             HHHHHHHHHHHHHHHTT-C-E-------------EE--E-CSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGC
T ss_pred             HHHHHHHHHHHHHHHCC-C-e-------------ee--C-CCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhC
Confidence            55566666777776541 1 1             11  0 1135677887 643212233444443 3477777665421


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEe--ccCChHHHHHHHHHHHhc
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISV--GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--~~~~~~~~i~~l~~~l~~  383 (386)
                          +                 ..++++|||+  ..+++++.++.|++++++
T Consensus       362 ----~-----------------~~~~~iRis~~~~~e~i~~~l~~l~~~~~~  392 (400)
T 3asa_A          362 ----R-----------------SGSGFVRFSSLGKREDILAACERLQMAPAL  392 (400)
T ss_dssp             ----G-----------------GGTTCEEEECCSCHHHHHHHHHHHHC----
T ss_pred             ----C-----------------CCCCEEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence                0                 0246799995  247778888888777764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.92  E-value=1.6e-24  Score=210.32  Aligned_cols=277  Identities=17%  Similarity=0.163  Sum_probs=189.1

Q ss_pred             hHHHHHHHHHhhcCCC----ce--EEeCcHHHHHH-HHHHhcCCC--------CEEEecCCCCCcHHHHHhhhcccCCcE
Q 016612           56 TRDALESLLAKLDKAD----RA--LCFTSGMAALA-AVTHLLGTG--------EEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~----~~--i~~~~gt~al~-~~~~~~~~g--------~~Vlv~~~~~~~~~~~~~~~~~~~g~~  120 (386)
                      +.+++++++++++|.+    ..  +++++|++++. ++.++.++|        |+|+++.+.|.++.    ..++..|.+
T Consensus       140 le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~----~~~~~~G~~  215 (514)
T 3mad_A          140 FEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD----KAAQYFGIK  215 (514)
T ss_dssp             HHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH----HHHHHHTCE
T ss_pred             HHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH----HHHHHcCCe
Confidence            5667888889999876    44  78888889986 455566655        89999999999885    455567899


Q ss_pred             EEEeCCC-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCc------------
Q 016612          121 VKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL------------  183 (386)
Q Consensus       121 ~~~v~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~------------  183 (386)
                      ++.++.+     |+++|++++++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+..            
T Consensus       216 v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~  295 (514)
T 3mad_A          216 LVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP  295 (514)
T ss_dssp             EEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCC
T ss_pred             eEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCc
Confidence            9999875     89999999999999999999999999999999999999999999999999875432            


Q ss_pred             cCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh-h--------c-CCCCCh---hhHHHHHhcC--C
Q 016612          184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-A--------E-GSGLAP---FDCWICLRGV--K  248 (386)
Q Consensus       184 ~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~-~--------~-~~~~~~---~~~~~~~~~~--~  248 (386)
                      .+....+.|++++|+||++.++.+  +|+++++++.+.+....... .        . ......   ...++.+..+  .
T Consensus       296 ~~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~  373 (514)
T 3mad_A          296 FDFRLEGVTSVSADTHKYGYGAKG--TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE  373 (514)
T ss_dssp             CSTTSTTCCEEEECTTTTTCCCSS--CEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCcEEEECchhccCCCCC--eEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence            122345789999999999766554  79998887654331110000 0        0 001111   1223222222  1


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCC
Q 016612          249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF  328 (386)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~  328 (386)
                      .+....++..++.+.+.+.+++.+.              ..++    ....+++++...+. ...++.+.+...|+.+ .
T Consensus       374 ~~~~~~~~~~~~~~~l~~~L~~~~g--------------~~~~----~~~~~~~~~~~~~~-~~~~l~~~L~~~Gi~v-~  433 (514)
T 3mad_A          374 GYLDATRRILQAADRLKAGVRAIPS--------------LKIL----GDPLWVIAVASDEL-NIYQVMEEMAGRGWRL-N  433 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTT--------------CEES----SCCSSEEEEECSSS-CHHHHHHHHHTTTCBC-E
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCC--------------eEEe----CCCeEEEEEeCCCC-CHHHHHHHHHhcCCEe-c
Confidence            2334455556666666777665432              1111    11234777776432 2556777776667754 2


Q ss_pred             CCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-----cCChHHHHHHHHHHHhc
Q 016612          329 GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       329 G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i~~l~~~l~~  383 (386)
                      |..                         .++.+|++++     .++++++++.|++++++
T Consensus       434 g~~-------------------------~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~  468 (514)
T 3mad_A          434 GLH-------------------------RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQ  468 (514)
T ss_dssp             EET-------------------------TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred             cCC-------------------------CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            111                         1345999986     37889999999988864

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.92  E-value=8e-25  Score=202.55  Aligned_cols=288  Identities=13%  Similarity=0.042  Sum_probs=183.6

Q ss_pred             CCCCCCCcccceeeeeeeec-CCCC-CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCC-
Q 016612           19 EFDPYGALSTPLYQTATFKQ-PSAT-ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE-   94 (386)
Q Consensus        19 ~~~~~g~~~~~~~~~~~~~~-~~~~-~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~-   94 (386)
                      +|+|+|..+.|......... .... ......|+.  .+...++++++++++|.+..+++++|++++. ++..++.+|| 
T Consensus        11 ~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~   88 (357)
T 3lws_A           11 QTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGT--GAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDN   88 (357)
T ss_dssp             TCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTE--ETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTC
T ss_pred             hhcccccCCCCCCHHHHHHHHHHhhcccCcccccC--ChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCC
Confidence            78888888888665221111 1100 111223332  2578899999999999998888999998876 5566778888 


Q ss_pred             -EEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----CHHHHHhhhCCCceEEEEeCCCCCC-ccccc---HHHHHHHH
Q 016612           95 -EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPR-QQICD---IRKIAEMA  165 (386)
Q Consensus        95 -~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~~~~~~~~v~~~~~~npt-G~~~~---l~~i~~la  165 (386)
                       .|+++.+.|...... .......|.+++.++..    |+++++++.  ++++|++++|+||+ |.+.+   +++|.++|
T Consensus        89 ~~vi~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~  165 (357)
T 3lws_A           89 RTVAYHPLCHLEIHEQ-DGLKELHPIETILVGAADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYC  165 (357)
T ss_dssp             CEEEECTTCHHHHSST-THHHHHSSCEEEECSCTTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred             cEEEecccceeeeecc-chhhhccCcEEEEecCCCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHH
Confidence             677777765443210 01233458888888753    889999873  49999999999998 88875   89999999


Q ss_pred             HHcCCEEEEeCCCCC---CCcc---CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCC--Ch
Q 016612          166 HAHGALLLVDNSIMS---PVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--AP  237 (386)
Q Consensus       166 ~~~~~~li~D~a~~~---~~~~---~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~--~~  237 (386)
                      ++||++||+|++|..   +...   .....+.|+++.|+||+++++.|   |+++++ +++.+.+.......+...  ..
T Consensus       166 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~  241 (357)
T 3lws_A          166 RERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAG---AILAGP-AAFCQTARIWKRRYGGDLISLY  241 (357)
T ss_dssp             HHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSC---EEEEEC-HHHHHHHHHHHHHTTCCCSCCH
T ss_pred             HHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCce---EEEEcC-HHHHHHHHHHHHHhcCCcccch
Confidence            999999999999751   1111   11113568889999999977654   888876 556665554443332221  22


Q ss_pred             hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHH
Q 016612          238 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHV  315 (386)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l  315 (386)
                      ..+.+...+++....+.++..++.+.+.+.|++.+.+              .+..  .+..++++++.++..  ....++
T Consensus       242 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~--------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~  305 (357)
T 3lws_A          242 PYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGV--------------HTTP--EVPVSNMFHLHFDGQAADISPKL  305 (357)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTE--------------EEES--SSCSSSEEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------------eecc--CCCcceEEEEEecCChHHHHHHH
Confidence            2222222333222233344556667777777765321              1100  022467888887543  335677


Q ss_pred             HhhcCcceeccCCCCc
Q 016612          316 VETTKYFSITVSFGSV  331 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~  331 (386)
                      .+.+...|+.+++|..
T Consensus       306 ~~~l~~~Gi~v~~g~~  321 (357)
T 3lws_A          306 EQVQEETGLGFVGYLV  321 (357)
T ss_dssp             HHHHHHHCEESCSCCE
T ss_pred             HHHHHhcCeEEecccc
Confidence            8888888998887743

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.92  E-value=4e-24  Score=200.76  Aligned_cols=198  Identities=15%  Similarity=0.102  Sum_probs=141.8

Q ss_pred             ceeeccCCCC--CCCCCcc--cceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcC----CC--ceEEeCc
Q 016612           11 TLLMNFSNEF--DPYGALS--TPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----AD--RALCFTS   78 (386)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~--~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~--~~i~~~~   78 (386)
                      ..+++++.+.  ++.+..+  +.+.++...  ..........|... |.+ +++++.+++....+    .+  +.++++|
T Consensus        26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~--~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g  103 (397)
T 3fsl_A           26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEAR--LNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLG  103 (397)
T ss_dssp             SCCEECSSCCCCCTTSCCCCCHHHHHHHHH--HHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred             CCeEEEeeeEEECCCCCccCcHHHHHHHHh--hccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCC
Confidence            4578888442  3444333  233332111  01112244567765 765 78888888776554    33  4455666


Q ss_pred             HHHHHHHH---HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC----C---CHHHHHhhhC---CCceEEEE
Q 016612           79 GMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----C---DLDEVASAIG---PWTKLVWV  145 (386)
Q Consensus        79 gt~al~~~---~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~---d~~~l~~~~~---~~~~~v~~  145 (386)
                      |++++..+   .+++++||+|++++|+|+++.    ..++..|.+++.++.    .   |++++++.++   ++++++++
T Consensus       104 ~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~  179 (397)
T 3fsl_A          104 GSGALKVGADFLKRYFPESGVWVSDPTWENHV----AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLH  179 (397)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCEEEESSCCHHHH----HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEEC
T ss_pred             cHHHHHHHHHHHHhcCCCCeEEEeCCCchhHH----HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEe
Confidence            67998754   456899999999999998885    445578888888887    2   8999999987   67889999


Q ss_pred             eCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC----------CCCCCccEEEeccccccccCCCceEEE
Q 016612          146 ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGV  212 (386)
Q Consensus       146 ~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~G~  212 (386)
                      ++|+||||.+.+   +++|.++|+++|+++|+|++|+......          ....+.++++.|+||.+ |++|+|+||
T Consensus       180 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~riG~  258 (397)
T 3fsl_A          180 PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGG  258 (397)
T ss_dssp             SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCCEE
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc-cCcCCCeeE
Confidence            999999999975   6699999999999999999987544320          01235679999999999 666899999


Q ss_pred             EEE
Q 016612          213 LAV  215 (386)
Q Consensus       213 i~~  215 (386)
                      +++
T Consensus       259 ~~~  261 (397)
T 3fsl_A          259 LSV  261 (397)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.92  E-value=6.9e-24  Score=198.85  Aligned_cols=302  Identities=16%  Similarity=0.181  Sum_probs=199.3

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      +...++++.+++++|.++.+++++|++|+.+ +.++ +++||+|++++|+|+++.    ..++..|.+++.++.+     
T Consensus        39 ~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~  114 (393)
T 1mdo_A           39 PKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTL----NMIVLLGANPVMVDVDRDTLM  114 (393)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTTCC
T ss_pred             hHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHH----HHHHHCCCEEEEEeccCCcCC
Confidence            5788999999999999888999999999974 4556 789999999999999886    3445688999888752     


Q ss_pred             -CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCC-ccEEEeccc--cccc
Q 016612          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSAT--KFIA  203 (386)
Q Consensus       128 -d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~di~~~S~s--K~~~  203 (386)
                       |++++++.+++++++|+++   ||+|.+.++++|.++|+++|+++|+|++|+.+........+ .|++++|+|  |+++
T Consensus       115 ~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~  191 (393)
T 1mdo_A          115 VTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNIT  191 (393)
T ss_dssp             BCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSC
T ss_pred             CCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCccc
Confidence             7899999998889999865   47999999999999999999999999999876533222235 899999999  8885


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhhhhcC------------------------CCCChhhHHHHHhcCCcHHHHHHHHHH
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQNAEG------------------------SGLAPFDCWICLRGVKTMALRVEKQQD  259 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (386)
                      +  | ++|+++++++++.+.+........                        ..+++..+.+....++.+....++..+
T Consensus       192 ~--~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~  268 (393)
T 1mdo_A          192 C--A-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAA  268 (393)
T ss_dssp             S--S-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             c--c-cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  3 689999876666665554332110                        113444444444444445555555566


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC---HHhHHHHHhhcCcceeccCCCCcccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKHVVETTKYFSITVSFGSVKSLIS  336 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~gi~~~~G~~~~~~~  336 (386)
                      +.+.+.+.+.+.+ + .+  ...+..        .....+.++++.+++   .....++.+.+...|+.++.|.... ..
T Consensus       269 ~~~~l~~~L~~~~-~-~~--~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~-~~  335 (393)
T 1mdo_A          269 IAAQYHQAMADLP-F-QP--LSLPSW--------EHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAA-HT  335 (393)
T ss_dssp             HHHHHHHHHHTSS-C-EE--CCCCSS--------CEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCG-GG
T ss_pred             HHHHHHHHHhcCC-c-cc--ccCCCC--------CCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCcc-cc
Confidence            6677777776543 1 11  111000        001234578888753   1236677788877888877765321 00


Q ss_pred             cccccc---CCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          337 MPCFMS---HASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       337 ~p~~~~---~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                      .|....   ...++....    .....+|++++.    ++++++++.|+++++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~  385 (393)
T 1mdo_A          336 QKYYRERFPTLTLPDTEW----NSERICSLPLFPDMTESDFDRVITALHQIAGQ  385 (393)
T ss_dssp             SHHHHHHSTTCCCHHHHH----HHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             ChhhhccCCccCChhHHH----HHhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence            111000   001111000    014569999974    6666677777666654

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.92  E-value=4.8e-24  Score=198.62  Aligned_cols=273  Identities=16%  Similarity=0.173  Sum_probs=178.8

Q ss_pred             chHHHHHHHHHhhcCC-CceEEeCcHHHHHHHHHH----hc---CCC-CEEEecCCCCCcHHHHHhhhccc----CCc--
Q 016612           55 PTRDALESLLAKLDKA-DRALCFTSGMAALAAVTH----LL---GTG-EEIVAGDDLYGGTDRLLSRVTPK----TGV--  119 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~-~~~i~~~~gt~al~~~~~----~~---~~g-~~Vlv~~~~~~~~~~~~~~~~~~----~g~--  119 (386)
                      +...++++.+++++|. ++.+++++|++++.+++.    +.   ++| |+|++++|.|+++...+......    .+.  
T Consensus        70 ~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~  149 (375)
T 2eh6_A           70 PWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEP  149 (375)
T ss_dssp             HHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCS
T ss_pred             HHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCC
Confidence            4577899999999998 677788888899874432    34   788 99999999998765433222111    122  


Q ss_pred             ---EEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCccC---CCC
Q 016612          120 ---VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLE  188 (386)
Q Consensus       120 ---~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~~---~~~  188 (386)
                         .+..++..|++++++++++++++|++++++||||.+.+    +++|.++|+++|+++|+|++|+ .+....   ...
T Consensus       150 ~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  229 (375)
T 2eh6_A          150 LVPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQH  229 (375)
T ss_dssp             CCSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred             CCCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhh
Confidence               26667777999999999989999999999999999987    9999999999999999999998 332221   122


Q ss_pred             CC--ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 016612          189 LG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  266 (386)
Q Consensus       189 ~~--~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  266 (386)
                      .+  .|++  |+||++++  |+|+|++++++ ++.+.+.........+.++..+.++...++......++..++.+.+.+
T Consensus       230 ~~~~~d~~--s~SK~~~~--g~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  304 (375)
T 2eh6_A          230 FNLKPDVI--ALAKGLGG--GVPIGAILARE-EVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGNYFKE  304 (375)
T ss_dssp             GTCCCSEE--EECGGGGT--TSCCEEEEEEH-HHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEE--EEcccccC--CCCeEEEEEcH-HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34  6777  56799963  67899999874 454433321122223445565655555444333334445555566666


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCC
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  346 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~  346 (386)
                      .+++.+.         .          ..++.+.++++.++..  ..++.+.+...|+.+.++                 
T Consensus       305 ~L~~~~~---------~----------~~~~~g~~~~~~~~~~--~~~~~~~l~~~gi~~~~~-----------------  346 (375)
T 2eh6_A          305 KLKELGK---------G----------KVKGRGLMLGLELERE--CKDYVLKALEKGLLINCT-----------------  346 (375)
T ss_dssp             HHHHTTS---------S----------EEEEETTEEEEECSSC--CHHHHHHHHHTTEECEEE-----------------
T ss_pred             HHHHHhc---------C----------CceEEEEEEEEEEcCc--HHHHHHHHHHCCCEEecC-----------------
Confidence            6655321         0          0123467888887531  344555555567765432                 


Q ss_pred             CHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHH
Q 016612          347 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  380 (386)
Q Consensus       347 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~  380 (386)
                                .++++|++++.    ++++++++.|+++
T Consensus       347 ----------~~~~iRi~~~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          347 ----------AGKVLRFLPPLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             ----------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ----------CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                      14569999864    4455555555443

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.92  E-value=4.9e-24  Score=195.61  Aligned_cols=235  Identities=9%  Similarity=0.087  Sum_probs=158.8

Q ss_pred             HHHHHHHHHhhcC---CC--ceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           57 RDALESLLAKLDK---AD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        57 ~~~l~~~l~~~~g---~~--~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      ..++++.++++++   .+  +.++++++++++..++..+  ||+|+++ |+|+++.    ..++..|.+++.++.+    
T Consensus        58 ~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~--gd~Vl~~-p~y~~~~----~~~~~~g~~~~~v~~~~~~~  130 (335)
T 1uu1_A           58 DEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF--DRSVFFP-PTYSCYR----IFAKAVGAKFLEVPLTKDLR  130 (335)
T ss_dssp             CHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS--SEEEECS-SSCHHHH----HHHHHHTCEEEECCCCTTSC
T ss_pred             hHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh--CCcEEEC-CCcHHHH----HHHHHcCCeEEEeccCCCCC
Confidence            4567777777777   43  4556666679998766655  8999999 9998875    4445678899888764    


Q ss_pred             -CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC----ccCCCCCCccEEEecccccc
Q 016612          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV----LSRPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 -d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~----~~~~~~~~~di~~~S~sK~~  202 (386)
                       |++++     +++++|++++|+||||.+.+.+++.++++..| ++|+|++|+...    .......+.+++++|+||++
T Consensus       131 ~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  204 (335)
T 1uu1_A          131 IPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF  204 (335)
T ss_dssp             CCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTT
T ss_pred             CCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhc
Confidence             33443     57899999999999999999999999999888 999999986321    11112346789999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHhhCCCcceEec
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNY  279 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  279 (386)
                       |++|+|+|+++++ +++.+.+......  ...+...+.++...++.   +....++..++.+.+.+.+++..       
T Consensus       205 -g~~G~r~G~~~~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-------  273 (335)
T 1uu1_A          205 -SLAAQRVGYVVAS-EKFIDAYNRVRLP--FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG-------  273 (335)
T ss_dssp             -TCGGGCCEEEEEC-HHHHHHHHHHSCT--TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred             -CCcccCeEEEEeC-HHHHHHHHHhcCC--CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-------
Confidence             5568899999995 5566655544322  34555556555554443   22333444455555555555421       


Q ss_pred             CCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCC
Q 016612          280 AGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF  328 (386)
Q Consensus       280 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~  328 (386)
                        +.      +.    +..++++++.++. .....+.+.+..+|+.+++
T Consensus       274 --~~------~~----~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~  309 (335)
T 1uu1_A          274 --YR------IT----DSRGNFVFVFMEK-EEKERLLEHLRTKNVAVRS  309 (335)
T ss_dssp             --CC------BC----CCCSSEEEEECCT-HHHHHHHHHHHHHTEEEEE
T ss_pred             --cE------Ec----CCCCeEEEEECCC-CCHHHHHHHHHHCCEEEEE
Confidence              11      10    1235678888765 3355677777677876553

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.92  E-value=1e-24  Score=206.00  Aligned_cols=283  Identities=16%  Similarity=0.156  Sum_probs=186.1

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHHHhc------CCCCE-EEecCCCCCcHHHHHhhhcccC--CcEEE
Q 016612           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL------GTGEE-IVAGDDLYGGTDRLLSRVTPKT--GVVVK  122 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~~~~------~~g~~-Vlv~~~~~~~~~~~~~~~~~~~--g~~~~  122 (386)
                      +...++++.+++++|.+  +.+++++|++++. ++..++      ++||+ |+++.+.|+++...+....+..  |.+++
T Consensus        71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~  150 (416)
T 1qz9_A           71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR  150 (416)
T ss_dssp             GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEE
Confidence            47889999999999986  4556666678886 455454      89987 5566668877665543333333  88999


Q ss_pred             EeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCC-CCCCccEEEeccccc
Q 016612          123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATKF  201 (386)
Q Consensus       123 ~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-~~~~~di~~~S~sK~  201 (386)
                      .++.  ++++++.+++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..... ...+.|++++|+||+
T Consensus       151 ~v~~--~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~  228 (416)
T 1qz9_A          151 LVDS--PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKY  228 (416)
T ss_dssp             EESS--GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSST
T ss_pred             EeCc--HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCccc
Confidence            9987  8899999988999999999999999999999999999999999999999987654322 234689999999999


Q ss_pred             cccCCCceE-EEEEEcChhHHHHHHHhh-----------------------hhcCCCCChhhHHHHHhcC-----CcHHH
Q 016612          202 IAGHSDVMA-GVLAVKGERLAKELYFLQ-----------------------NAEGSGLAPFDCWICLRGV-----KTMAL  252 (386)
Q Consensus       202 ~~g~~g~~~-G~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-----~~~~~  252 (386)
                      +.++.+  + |+++++++ +.+.+....                       .......+......+..++     ..+..
T Consensus       229 l~~g~~--~~g~l~~~~~-~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  305 (416)
T 1qz9_A          229 LNGGPG--SQAFVWVSPQ-LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMAS  305 (416)
T ss_dssp             TCCCTT--CCCEEEECTT-TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCCCCC--CeEEEEECHH-HHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            855444  5 99998755 322222110                       0011122332222222221     23444


Q ss_pred             HHHHHHHHHHHHHHHHhhC-CCcceEecCCCCCCCchhhhhhc-cCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCC
Q 016612          253 RVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQ-AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  330 (386)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~  330 (386)
                      ..++..++.+.+.+.|++. +.      .++      .++.+. ....++++++.+++   ...+.+.+...|+.+.+. 
T Consensus       306 ~~~~~~~~~~~l~~~L~~~~~~------~g~------~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~gi~~~~~-  369 (416)
T 1qz9_A          306 LRRKSLALTDLFIELVEQRCAA------HEL------TLVTPREHAKRGSHVSFEHPE---GYAVIQALIDRGVIGDYR-  369 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT------SCC------EECSCSSGGGBCSEEEEECTT---HHHHHHHHHTTTEECEEE-
T ss_pred             HHHHHHHHHHHHHHHHHhhccC------CCe------EEeCCCCHHHcCCEEEEecCC---HHHHHHHHHhCCcEeccC-
Confidence            5556666677777777653 20      011      111000 00135778888764   455666666667754210 


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-----cCChHHHHHHHHHHHhcC
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i~~l~~~l~~~  384 (386)
                                                .++++||+++     .++++++++.|++++++.
T Consensus       370 --------------------------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~  402 (416)
T 1qz9_A          370 --------------------------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK  402 (416)
T ss_dssp             --------------------------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             --------------------------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence                                      2466999986     377778888888777653

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.92  E-value=4.4e-23  Score=192.03  Aligned_cols=300  Identities=14%  Similarity=0.127  Sum_probs=194.5

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHh---cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +...++++.+++++|.++.++++||++|+. ++.++   +++||+|+++.++|+++...    ++..|.+++.++.+   
T Consensus        32 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~  107 (375)
T 2fnu_A           32 KRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANM----LLESGYTPVFAGIKNDG  107 (375)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHH----HHHTTCEEEECCBCTTS
T ss_pred             hHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHH----HHHCCCEEEEeccCCCC
Confidence            567899999999999988888889999987 45556   78999999999999998644    34578999988864   


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCC--CCCCccEEEeccc--cc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMHSAT--KF  201 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~--~~~~~di~~~S~s--K~  201 (386)
                        |++++++.+++++++|+++++   +|.+.|+++|.++|+++|+++|+|++|+.+.....  ...-.|+++.|+|  |+
T Consensus       108 ~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~  184 (375)
T 2fnu_A          108 NIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKP  184 (375)
T ss_dssp             SBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             CCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCC
Confidence              789999999888999888776   89999999999999999999999999987764322  1111378888887  99


Q ss_pred             cccCCCceEEEEEE-cChhHHHHHHHhhhhc--------------C--CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHH
Q 016612          202 IAGHSDVMAGVLAV-KGERLAKELYFLQNAE--------------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  264 (386)
Q Consensus       202 ~~g~~g~~~G~i~~-~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  264 (386)
                      + ++ |  .|++++ +++++.+.+.......              +  ..+++..+.+....+..+....++..++.+.+
T Consensus       185 ~-~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  260 (375)
T 2fnu_A          185 I-TT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTY  260 (375)
T ss_dssp             S-CC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             c-cc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 55 5  355555 5566665555443211              1  13455555554444555666666677777777


Q ss_pred             HHHHhhCCCcceEecCCCCCCCchhhhhhc--cCCCCceEEEEeCCH-H-hHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          265 AEFLASHPRVKKVNYAGLPEHPGHELHYSQ--AKGAGSVLSFLTGSL-A-LSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       265 ~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~--~~~~~~~~~~~~~~~-~-~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      .+.|++.+.              ..+....  ......++++.++.. . ....+.+.+...|+.++.+.. .....+..
T Consensus       261 ~~~L~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~-p~~~~~~~  325 (375)
T 2fnu_A          261 DRIFKDNPY--------------FTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYK-PIYQYQLY  325 (375)
T ss_dssp             HHHHTTCSS--------------EEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCC-CGGGSHHH
T ss_pred             HHHhhcCCC--------------ccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCcccccc-ccccchhh
Confidence            777776432              1111110  011234456666432 1 366777777777887662211 11100100


Q ss_pred             c---cCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          341 M---SHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       341 ~---~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                      .   ....++...    ...++++||+++.    ++++++++.|++++++.
T Consensus       326 ~~~~~~~~~~~~~----~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          326 QQLFNTAPLKSAE----DFYHAEISLPCHANLNLESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             HHHHCCCCCHHHH----HHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCccCChHHH----HHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            0   000011000    0013579999974    66667777777766543

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.1e-24  Score=206.66  Aligned_cols=278  Identities=18%  Similarity=0.204  Sum_probs=191.9

Q ss_pred             hHHHHHHHHHhhcCCC----ceEEeCcHHHHHH-HHHHhcC-----CC---CEEEecCCCCCcHHHHHhhhcccCCcEEE
Q 016612           56 TRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG-----TG---EEIVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~----~~i~~~~gt~al~-~~~~~~~-----~g---~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~  122 (386)
                      +.+++.+++++++|.+    ..+++++|++++. ++.++++     +|   |+|+++.+.|+++.    ..++..|++++
T Consensus       108 l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~----~~~~~~G~~~~  183 (497)
T 3mc6_A          108 MESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFD----KAAYYFGMKLR  183 (497)
T ss_dssp             HHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHH----HHHHHSCCEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHH----HHHHHcCCeEE
Confidence            5778889999999876    4677778888886 4444543     56   89999999999885    45566789999


Q ss_pred             EeCCC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC-----------c--
Q 016612          123 RVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----------L--  183 (386)
Q Consensus       123 ~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~-----------~--  183 (386)
                      .++.+      |+++|++++++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+.           .  
T Consensus       184 ~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~  263 (497)
T 3mc6_A          184 HVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPL  263 (497)
T ss_dssp             EECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCC
T ss_pred             EEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcc
Confidence            88754      5899999999999999999999999999999999999999999999999987321           1  


Q ss_pred             cCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh--cC---C-CC----C---hhhHHHHHhcCC--
Q 016612          184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EG---S-GL----A---PFDCWICLRGVK--  248 (386)
Q Consensus       184 ~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--~~---~-~~----~---~~~~~~~~~~~~--  248 (386)
                      .+....++|+++.|++|++.++.+  +|+++++++.+.+........  .+   . ..    .   ....++.+..+.  
T Consensus       264 ~~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~  341 (497)
T 3mc6_A          264 LDFRVPGVTSISCDTHKYGFAPKG--SSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGEN  341 (497)
T ss_dssp             CSTTSTTCCEEEEETTTTTCCCSS--CEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCcEEEECchhhcCCCCC--ceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHH
Confidence            123345789999999999866654  799998876543321111000  00   0 00    0   122333333222  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhh-CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccC
Q 016612          249 TMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  327 (386)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~  327 (386)
                      .+....++..++++.+.+.+++ .+.+              .++.   ...+++++|...+. ...++.+.+...|+.++
T Consensus       342 ~~~~~~~~~~~~~~~l~~~L~~~~~g~--------------~~~~---~~~~~~v~~~~~~~-~~~~l~~~L~~~Gi~v~  403 (497)
T 3mc6_A          342 GYIESCQEIVGAAMKFKKYIQENIPDL--------------DIMG---NPRYSVISFSSKTL-NIHELSDRLSKKGWHFN  403 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTC--------------EECS---CCCSSEEEEECTTT-THHHHHHHHHTTTCBCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCE--------------EEec---CCCeeEEEEeCCCC-CHHHHHHHHHhCCEEEe
Confidence            2344455666777777888776 3321              1110   12457788876542 35677777777787654


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhc
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRT  383 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~  383 (386)
                      .+..                          +..+|++++   .++++++++.|++++++
T Consensus       404 ~~~~--------------------------~~~~ri~~~~~t~e~i~~~~~~L~~~l~~  436 (497)
T 3mc6_A          404 ALQK--------------------------PVALHMAFTRLSAHVVDEICDILRTTVQE  436 (497)
T ss_dssp             ECCS--------------------------SCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred             cCCC--------------------------CCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            3221                          234888885   59999999999998865

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.92  E-value=7.4e-24  Score=199.51  Aligned_cols=283  Identities=20%  Similarity=0.136  Sum_probs=184.4

Q ss_pred             HHHHHHhhcCCCce-EEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc--EEEEeCC------CCH
Q 016612           60 LESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNT------CDL  129 (386)
Q Consensus        60 l~~~l~~~~g~~~~-i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~--~~~~v~~------~d~  129 (386)
                      +++++++++|.+.. +++++|++++. ++..++++||+|++++|.|+++.... ..++..|.  ..+.++.      .|+
T Consensus        74 ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~  152 (407)
T 2dkj_A           74 AIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSYGVRPDTELIDL  152 (407)
T ss_dssp             HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEECCCTTTSSCCH
T ss_pred             HHHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEecCCCcccCccCH
Confidence            34589999998854 67789998887 45557899999999999998773111 22333344  4444431      389


Q ss_pred             HHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCCCccEEEeccccccc
Q 016612          130 DEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       130 ~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~di~~~S~sK~~~  203 (386)
                      +++++.+++ ++++|++++|+||  ...|+++|.++|+++|+++|+|++|+.|...     .... ..|++++|+||+++
T Consensus       153 ~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~  229 (407)
T 2dkj_A          153 EEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTLR  229 (407)
T ss_dssp             HHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGGC
T ss_pred             HHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccCC
Confidence            999999874 8999999999997  6779999999999999999999999864321     1122 47999999999886


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhhhhcCC-CCChhhHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHhhCCCcceE
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  277 (386)
                      |+   ++|+++++++++.+.+......... ..+......+..+++     .+....++..++.+.+.+.|++..     
T Consensus       230 g~---~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-----  301 (407)
T 2dkj_A          230 GP---RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG-----  301 (407)
T ss_dssp             CC---SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred             CC---CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC-----
Confidence            54   5799999755666655544432222 233322222222222     223444555556666666666531     


Q ss_pred             ecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          278 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       278 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                                +.++..  +..++++++.++.. .....+.+.+...|+.+.+|........+                 .
T Consensus       302 ----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~-----------------~  352 (407)
T 2dkj_A          302 ----------YRIVTG--GTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPP-----------------R  352 (407)
T ss_dssp             ----------CEEGGG--SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCT-----------------T
T ss_pred             ----------ceeecC--CCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccc-----------------c
Confidence                      111111  23567888887531 13556777777778887766531000000                 1


Q ss_pred             CCCeEEEEec--------cCChHHHHHHHHHHHhc
Q 016612          357 TEDLVRISVG--------IEDVNDLISDLDKALRT  383 (386)
Q Consensus       357 ~~~~iRis~~--------~~~~~~~i~~l~~~l~~  383 (386)
                      .++++|+|++        .++++++++.|++++++
T Consensus       353 ~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          353 VTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             TCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             CCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence            2567999983        58899999999988865

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.92  E-value=1.7e-23  Score=195.34  Aligned_cols=288  Identities=15%  Similarity=0.168  Sum_probs=185.8

Q ss_pred             chHHHHHHHHHhhcCCCceEE-eCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC--cEEEEeC------
Q 016612           55 PTRDALESLLAKLDKADRALC-FTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVN------  125 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~-~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g--~~~~~v~------  125 (386)
                      +.++++++.+++++|.++.++ ++|||+++++++..+++||+|++.++.|++..  +..+++..|  .+++.++      
T Consensus        35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g~  112 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTED  112 (379)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESSC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEecccccc
Confidence            367889999999999886555 46788999877777889999999999887653  223444444  3555543      


Q ss_pred             --------CCCHHHHHhhhC-CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCcc
Q 016612          126 --------TCDLDEVASAIG-PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGAD  192 (386)
Q Consensus       126 --------~~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~d  192 (386)
                              ..|++++++.++ +++++|++++++|++|.+.|   +++|.++|+++|+++|+|++++ +... +....+.|
T Consensus       113 ~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~~~d  191 (379)
T 3ke3_A          113 TEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKELGID  191 (379)
T ss_dssp             CSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHHTCS
T ss_pred             ccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccccccCCC
Confidence                    258999999885 58999999999999999999   9999999999999999999998 6432 22335889


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh-----------------hcC-----CCCChhhHHHHHhcCCc-
Q 016612          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-----------------AEG-----SGLAPFDCWICLRGVKT-  249 (386)
Q Consensus       193 i~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~-----------------~~~-----~~~~~~~~~~~~~~~~~-  249 (386)
                      ++++|++|++++|+|  +|+++++++ +.+.+.....                 ..+     ...+....+.+..+++. 
T Consensus       192 ~~~~s~~K~l~~~~g--~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~  268 (379)
T 3ke3_A          192 VLISAPQKGWSSTPC--AGLVMLSAA-AIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEA  268 (379)
T ss_dssp             EEEECTTTTTCSCCC--EEEEEECHH-HHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             EEEecchhhcCCCCc--eEEEEECHH-HHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence            999999999988876  799998744 4443332100                 001     12233333333333322 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCCHHhHHHHHhhcCccee
Q 016612          250 ----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKYFSI  324 (386)
Q Consensus       250 ----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~gi  324 (386)
                          +....++..+..+.+.+.+++..         +.      ++.. +..+++ +..+..++...  .+.+.+..+|+
T Consensus       269 ~~~g~~~~~~~~~~l~~~l~~~l~~~g---------~~------~~~~-~~~~~~~i~~~~~~~~~~--~~~~~L~~~Gi  330 (379)
T 3ke3_A          269 KEIGFDILRDAQWELGNRVRKVLTDKG---------IE------SVAA-EGFEAPGVVVSYTERDDM--HKGSAFAEAGL  330 (379)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHTT---------CC------BSBC-TTCBCSSEEEEECSCHHH--HSSHHHHHTTC
T ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHcC---------CE------ecCC-ccccCceEEEEccCCcch--HHHHHHHHCCe
Confidence                23333444455555566665532         11      1100 011233 34444454432  12444555677


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      .+.+|.... +..|                 ...+.+|+|++    .++++++++.|+++++++
T Consensus       331 ~v~~g~~~~-~~~~-----------------~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~  376 (379)
T 3ke3_A          331 QIAAGVPLK-VGEP-----------------DNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV  376 (379)
T ss_dssp             CCEECCCCS-SCCC-----------------TTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred             EEeCCcccc-cccc-----------------CcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence            666654311 0001                 12577999985    499999999999888753

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.92  E-value=1.4e-23  Score=204.12  Aligned_cols=175  Identities=16%  Similarity=0.218  Sum_probs=128.4

Q ss_pred             ccccCC-CCc-hHHHHHH-HHHhhcCC------CceEEeCcH-HHHHHHHH-H-----hcCCCCEEEecCCCCCcHHHHH
Q 016612           47 YDYTRS-GNP-TRDALES-LLAKLDKA------DRALCFTSG-MAALAAVT-H-----LLGTGEEIVAGDDLYGGTDRLL  110 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~-~l~~~~g~------~~~i~~~~g-t~al~~~~-~-----~~~~g~~Vlv~~~~~~~~~~~~  110 (386)
                      ..|... |.+ +++++.+ ++.+..+.      ++.|++++| ++++..++ .     ++++||.|++++|.|+++....
T Consensus       132 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~  211 (546)
T 2zy4_A          132 CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP  211 (546)
T ss_dssp             CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHH
Confidence            468776 665 7777554 44444321      245555555 58887544 3     4789999999999999886432


Q ss_pred             hhhcccCCcEEEEeCC-------CCHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHH--HHcCCEEEEeCCC
Q 016612          111 SRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMA--HAHGALLLVDNSI  178 (386)
Q Consensus       111 ~~~~~~~g~~~~~v~~-------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la--~~~~~~li~D~a~  178 (386)
                        .....|.+++.++.       .|++++++.+++++++|++++|+||||.+.+   +++|.++|  +++|++||+||+|
T Consensus       212 --~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y  289 (546)
T 2zy4_A          212 --ELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVY  289 (546)
T ss_dssp             --HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTT
T ss_pred             --HHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcc
Confidence              23456788888875       3788999888889999999999999999986   67788998  7789999999999


Q ss_pred             CCCCcc--CCC--CCCccEEEeccccccccCCCceEEEEEEcChhHHHHH
Q 016612          179 MSPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (386)
Q Consensus       179 ~~~~~~--~~~--~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~  224 (386)
                      +.....  +..  ..+.++++.|+||++ |.+|+|+||++++++++.+.+
T Consensus       290 ~~~~~~~~s~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~l  338 (546)
T 2zy4_A          290 GTFADDFQSLFAICPENTLLVYSFSKYF-GATGWRLGVVAAHQQNVFDLA  338 (546)
T ss_dssp             GGGSTTCCCHHHHCGGGEEEEEESTTTT-TCGGGCEEEEEEESSCHHHHH
T ss_pred             hhhcccCcCHHHhCCCCEEEEEeCcccc-CCCCcceEEEEECCHHHHHHH
Confidence            743321  111  125789999999998 556899999999865344433

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.91  E-value=1.1e-23  Score=198.84  Aligned_cols=285  Identities=15%  Similarity=0.078  Sum_probs=178.9

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcC----CCceEE--eCcHHHHHHHH---HHhcCCC-----CEEEecCCCCCcHHH
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FTSGMAALAAV---THLLGTG-----EEIVAGDDLYGGTDR  108 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~~gt~al~~~---~~~~~~g-----~~Vlv~~~~~~~~~~  108 (386)
                      ..+.|.+. |.+ +++++.+++....|    .++.++  +++|++|+.++   ..++++|     |+|++++|+|+++. 
T Consensus        66 ~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~-  144 (412)
T 1ajs_A           66 LNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN-  144 (412)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH-
T ss_pred             hccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHH-
Confidence            34567655 554 56666666644332    245666  77778998754   3457899     99999999999886 


Q ss_pred             HHhhhcccCCcE-EEEeCC---C----CHHHHHhhhCC---CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEE
Q 016612          109 LLSRVTPKTGVV-VKRVNT---C----DLDEVASAIGP---WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLV  174 (386)
Q Consensus       109 ~~~~~~~~~g~~-~~~v~~---~----d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~  174 (386)
                         ..++..|.+ ++.++.   +    |++++++.+++   +++++++++|+||||.+.+   +++|.++|+++|+++|+
T Consensus       145 ---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~  221 (412)
T 1ajs_A          145 ---GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF  221 (412)
T ss_dssp             ---HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             ---HHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence               444567788 877775   2    78999988763   6788889999999999975   67899999999999999


Q ss_pred             eCCCCCCCcc----C---C--C--CCCccEEEeccccccccCCCceEEEEEE--cChh----HHHHHHHhhhhcCCCCCh
Q 016612          175 DNSIMSPVLS----R---P--L--ELGADIVMHSATKFIAGHSDVMAGVLAV--KGER----LAKELYFLQNAEGSGLAP  237 (386)
Q Consensus       175 D~a~~~~~~~----~---~--~--~~~~di~~~S~sK~~~g~~g~~~G~i~~--~~~~----~~~~~~~~~~~~~~~~~~  237 (386)
                      ||+|......    .   .  .  ..+.++++.|+||.+ |++|+|+|++++  ++++    +.+.+...........+.
T Consensus       222 De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (412)
T 1ajs_A          222 DSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-GLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPA  300 (412)
T ss_dssp             EESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCS
T ss_pred             EcccccccCCcccccchHHHHHhccCCcEEEEEeccccc-CCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCCh
Confidence            9997643221    0   1  1  123469999999999 567899999998  2344    333233322222223355


Q ss_pred             hhHHHHHhcCCcH----------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE-Ee
Q 016612          238 FDCWICLRGVKTM----------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LT  306 (386)
Q Consensus       238 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-~~  306 (386)
                      ..+.++...++..          ....+.+.++.+.+.+.+++..         .+  .++.+..  +  .++++.| .+
T Consensus       301 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---------~~--~~~~~~~--~--~~~~~~~~~~  365 (412)
T 1ajs_A          301 QGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK---------TP--GTWNHIT--D--QIGMFSFTGL  365 (412)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CS--SCCHHHH--H--CCSSEEECCC
T ss_pred             HHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---------CC--CCeeEEc--C--CCceEEEeCC
Confidence            5555554444332          2223333444445555554431         00  0122221  1  2344444 33


Q ss_pred             CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhc
Q 016612          307 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRT  383 (386)
Q Consensus       307 ~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~  383 (386)
                      +    .+.+.+.+...|+.+.+                               .+|+|++   .++++++++.|++++++
T Consensus       366 ~----~~~~~~~l~~~gv~v~~-------------------------------~~Ris~~~~~~~~i~~~~~~l~~~l~~  410 (412)
T 1ajs_A          366 N----PKQVEYLINQKHIYLLP-------------------------------SGRINMCGLTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             C----HHHHHHHHHTTCEECCT-------------------------------TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             C----HHHHHHHHHhCCEEecC-------------------------------CcEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence            3    23344444455775442                               1689886   48999999999999876


Q ss_pred             C
Q 016612          384 G  384 (386)
Q Consensus       384 ~  384 (386)
                      .
T Consensus       411 ~  411 (412)
T 1ajs_A          411 I  411 (412)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.91  E-value=1.8e-23  Score=197.35  Aligned_cols=283  Identities=14%  Similarity=0.124  Sum_probs=178.0

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcC----CCceEE--eCcHHHHHHHH---HHhcCCCCEEEecCCCCCcHHHHHhhhc
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FTSGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~~gt~al~~~---~~~~~~g~~Vlv~~~~~~~~~~~~~~~~  114 (386)
                      ...|.+. |.+ +++++.+++....|    .++.++  +++|++|+.++   ...+++||+|++++|+|+++.    ..+
T Consensus        66 ~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~----~~~  141 (412)
T 1yaa_A           66 NHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHM----AIF  141 (412)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHH----HHH
T ss_pred             ccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHH----HHH
Confidence            3457655 665 67777777765444    345666  66777898754   455689999999999999986    445


Q ss_pred             ccCCcEEEEeCC-------CCHHHHHhhhCCC---ceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          115 PKTGVVVKRVNT-------CDLDEVASAIGPW---TKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       115 ~~~g~~~~~v~~-------~d~~~l~~~~~~~---~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      +..|.+++.++.       .|++++++.++++   +.++++++|+||||.+.+   +++|.++|+++|+++|+|++|+..
T Consensus       142 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~  221 (412)
T 1yaa_A          142 ENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGF  221 (412)
T ss_dssp             HTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred             HHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence            567888888876       2789999888642   445555999999999975   678999999999999999998643


Q ss_pred             Ccc----------CCCC-CC---ccEEEeccccccccCCCceEEEEE--E----cChh----HHHHHHHhhhhcCCCCCh
Q 016612          182 VLS----------RPLE-LG---ADIVMHSATKFIAGHSDVMAGVLA--V----KGER----LAKELYFLQNAEGSGLAP  237 (386)
Q Consensus       182 ~~~----------~~~~-~~---~di~~~S~sK~~~g~~g~~~G~i~--~----~~~~----~~~~~~~~~~~~~~~~~~  237 (386)
                      ...          .... ..   .+++++|+||.+ |++|+|+||++  +    +++.    +.+.+...........+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  300 (412)
T 1yaa_A          222 ATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPA  300 (412)
T ss_dssp             SSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCH
T ss_pred             cCCcccchhHHHHHHHhcCCCCcceEEEeccCCCC-CCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCCh
Confidence            221          1111 12   578999999999 57789999998  6    2344    544444433332333355


Q ss_pred             hhHHHHHhcCCcH----------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE-Ee
Q 016612          238 FDCWICLRGVKTM----------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LT  306 (386)
Q Consensus       238 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~-~~  306 (386)
                      ..+.++...++..          ....+.+.++.+.+.+.+++..       +.    .++.+..  +  .++++.| .+
T Consensus       301 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-------~~----~~~~~~~--~--~~~~~~~~~~  365 (412)
T 1yaa_A          301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG-------TP----GNWDHIV--N--QCGMFSFTGL  365 (412)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CS----SCCTHHH--H--CCSSEEECCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------CC----CCeeeec--c--CceEEEeeCC
Confidence            5555554444332          2223333344444555554321       00    0122221  1  2344444 33


Q ss_pred             CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec---cCChHHHHHHHHHHHhc
Q 016612          307 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRT  383 (386)
Q Consensus       307 ~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~  383 (386)
                      + .   +.+.+.+...|+.+.+                               ++|||++   .++++++++.|+++++.
T Consensus       366 ~-~---~~~~~~l~~~gi~v~~-------------------------------~~Ris~~~~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          366 T-P---QMVKRLEETHAVYLVA-------------------------------SGRASIAGLNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             C-H---HHHHHHHHHHCEECCT-------------------------------TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             C-H---HHHHHHHHhCCEEecc-------------------------------CcEEEEccCCHhHHHHHHHHHHHHHHh
Confidence            2 2   2333333445665442                               2899986   38889999999988864

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.91  E-value=1.1e-23  Score=199.22  Aligned_cols=285  Identities=15%  Similarity=0.158  Sum_probs=184.8

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH-hcC-------CC-CEEEecCCCCCcHHHHHhhhcc--------
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLG-------TG-EEIVAGDDLYGGTDRLLSRVTP--------  115 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~-~~~-------~g-~~Vlv~~~~~~~~~~~~~~~~~--------  115 (386)
                      ..+.+.++++.+++++|.++.++++||++|+.+++. +..       +| ++|++.+|.|++..........        
T Consensus        97 ~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~  176 (420)
T 2pb2_A           97 TNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF  176 (420)
T ss_dssp             CCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred             CCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence            346899999999999998888999999999875444 443       67 4899999999775322112111        


Q ss_pred             -cCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccc----ccHHHHHHHHHHcCCEEEEeCCCCC-CCccC----
Q 016612          116 -KTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI----CDIRKIAEMAHAHGALLLVDNSIMS-PVLSR----  185 (386)
Q Consensus       116 -~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~----~~l~~i~~la~~~~~~li~D~a~~~-~~~~~----  185 (386)
                       .....+..++..|++++++.+++++++|++++++|++|.+    .++++|.++|+++|+++|+||+|.. +....    
T Consensus       177 ~p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~  256 (420)
T 2pb2_A          177 GPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAY  256 (420)
T ss_dssp             SSCCSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHH
T ss_pred             CCCCCCeEEecCCCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHH
Confidence             1112366777779999999999899999999999987863    3589999999999999999999952 11111    


Q ss_pred             -CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH--HHHHHHHHHHHH
Q 016612          186 -PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQ  262 (386)
Q Consensus       186 -~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  262 (386)
                       ......|++  |+||+++  +|+++|++++++ ++.+.+...........++..++++...++.+  ....++..++.+
T Consensus       257 ~~~~~~~dii--t~sK~l~--~G~~iG~~~~~~-~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~  331 (420)
T 2pb2_A          257 MHYGVTPDIL--TSAKALG--GGFPVSAMLTTQ-EIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQ  331 (420)
T ss_dssp             HHHTCCCSEE--EECGGGG--TTSCCEEEEECH-HHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred             HhcCCCCCeE--Eeccccc--CCCceEEEEEhH-HHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence             112346876  6799996  368899999975 45443322112222345566665554444322  223344445555


Q ss_pred             HHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHH--hHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA--LSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       263 ~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      .+.+.+++...    ..+.+          ...++.+.++++.+....  ...++.+.+...|+.+.+++          
T Consensus       332 ~l~~~L~~~~~----~~~~~----------~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~----------  387 (420)
T 2pb2_A          332 QFVQHLQAIDE----QFDIF----------SDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG----------  387 (420)
T ss_dssp             HHHHHHHHHHH----HHCCE----------EEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS----------
T ss_pred             HHHHHHHHHHh----cCCCe----------EEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC----------
Confidence            55555543210    00100          011335788888885432  35677777777788665432          


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                       ++++|++++    .++++++++.|++++++
T Consensus       388 -----------------~~~iRl~~~~~~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          388 -----------------ADVMRFAPSLVVEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             -----------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                             345999964    47888888888888765

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.91  E-value=1.1e-23  Score=197.85  Aligned_cols=279  Identities=14%  Similarity=0.143  Sum_probs=183.5

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH-hcC------C-CCEEEecCCCCCcHHHHHhhhcccCCcE-----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLG------T-GEEIVAGDDLYGGTDRLLSRVTPKTGVV-----  120 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~-~~~------~-g~~Vlv~~~~~~~~~~~~~~~~~~~g~~-----  120 (386)
                      .+.+.++++.+++++|.++.+++++|++|+.+++. +..      + ++.|++.+|.|++....   .+...|.+     
T Consensus        81 ~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~---~~~~~g~~~~~~~  157 (397)
T 2ord_A           81 NRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLG---SLTATGQPKYQKP  157 (397)
T ss_dssp             EHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHH---HHHHSBCHHHHGG
T ss_pred             CHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchh---hhhccCChhhccc
Confidence            35789999999999998888899999999875444 332      5 47899888988664321   12223332     


Q ss_pred             -------EEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcc-cc---cHHHHHHHHHHcCCEEEEeCCCCCCCc--cCCC
Q 016612          121 -------VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ-IC---DIRKIAEMAHAHGALLLVDNSIMSPVL--SRPL  187 (386)
Q Consensus       121 -------~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~-~~---~l~~i~~la~~~~~~li~D~a~~~~~~--~~~~  187 (386)
                             +..++..|++++++.+++++++|++++|+||||. +.   ++++|.++|+++|+++|+||+|+ +..  ....
T Consensus       158 ~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~  236 (397)
T 2ord_A          158 FEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGKLF  236 (397)
T ss_dssp             GCSCCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSS
T ss_pred             cCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCccch
Confidence                   6777878999999999989999999999999999 43   68999999999999999999997 221  1111


Q ss_pred             -----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH--HHHHHHHHHH
Q 016612          188 -----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDN  260 (386)
Q Consensus       188 -----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  260 (386)
                           ....|++  |+||+++  +|+|+|+++++++ +. .+...........++..++++..+++.+  ....++..++
T Consensus       237 ~~~~~~~~~d~~--s~sK~~~--~G~r~G~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  310 (397)
T 2ord_A          237 AYQKYGVVPDVL--TTAKGLG--GGVPIGAVIVNER-AN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEK  310 (397)
T ss_dssp             HHHHHTCCCSEE--EECGGGG--TTSCCEEEEECST-TC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHH
T ss_pred             hhhhhCCCCCee--eeccccC--CCcCeEEEEEchH-hc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                 1236766  6799996  3678999999865 32 2321112222344555555554443322  1233445555


Q ss_pred             HHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          261 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       261 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      .+.+.+.+++..       .+++.      . ...++.+.++++.++......++.+.+...|+.+.+|+          
T Consensus       311 ~~~l~~~L~~~~-------~~~~~------~-~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~----------  366 (397)
T 2ord_A          311 GNYLMKKLQEMK-------EEYDV------V-ADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAG----------  366 (397)
T ss_dssp             HHHHHHHHHHHH-------HHCTT------E-EEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEET----------
T ss_pred             HHHHHHHHHHHH-------HhCCc------e-EEEEEEeEEEEEEECChHHHHHHHHHHHHCCCEEccCC----------
Confidence            555665555421       00110      0 01123467888888643335667777766788665432          


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                       ++++|++++    .++++++++.|++++++
T Consensus       367 -----------------~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          367 -----------------NNTIRFLPPLTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             -----------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -----------------CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence                             345999964    47788888888887764

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.91  E-value=2.8e-23  Score=192.32  Aligned_cols=255  Identities=16%  Similarity=0.096  Sum_probs=167.4

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCE--EEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEE--IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~--Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      +...++++++++++|.+..+++++|++++. ++..++.+||.  |+++.+.|...... .......|.+++.++..    
T Consensus        48 ~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~  126 (359)
T 3pj0_A           48 AVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQ-DGLKELQQITPLLLGTANQLL  126 (359)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSST-THHHHHHCCEEEECSCTTSCC
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhc-chHHHhcCceEEecCCcCCCc
Confidence            578899999999999998888899998876 55667778886  55665555332110 01113458888888864    


Q ss_pred             CHHHHHhhhCCCceEEEEeCCCCCC-ccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc------cCCCCCCccEEEec
Q 016612          128 DLDEVASAIGPWTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHS  197 (386)
Q Consensus       128 d~~~l~~~~~~~~~~v~~~~~~npt-G~~~~---l~~i~~la~~~~~~li~D~a~~~~~~------~~~~~~~~di~~~S  197 (386)
                      |+++++++ .+++++|++++|+||+ |.+.+   +++|.++|++||++||+|+++..+..      ......+.|+++.|
T Consensus       127 d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s  205 (359)
T 3pj0_A          127 TIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVS  205 (359)
T ss_dssp             CHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEE
T ss_pred             CHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEe
Confidence            89999988 7889999999999998 68777   45559999999999999999764321      11112367899999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCC--ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcc
Q 016612          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  275 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  275 (386)
                      +||+++++.   +|+++.+ +++.+.+.......+...  ....+.+...+++....+.++..++.+.+.+.|++.+.+ 
T Consensus       206 ~sK~~~~~~---gg~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~-  280 (359)
T 3pj0_A          206 FYKGIGGIA---GAILAGN-DDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGV-  280 (359)
T ss_dssp             SSSTTCCSS---CEEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTE-
T ss_pred             ccccCCCcc---eEEEECC-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCc-
Confidence            999997764   3777765 566666655443332221  222222222222222233445566666777777664321 


Q ss_pred             eEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhhcCcceeccCCCCc
Q 016612          276 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSV  331 (386)
Q Consensus       276 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~  331 (386)
                                   .+..  .+..++++++.++..  .....+.+.+...|+.+++|..
T Consensus       281 -------------~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~  323 (359)
T 3pj0_A          281 -------------KTVP--EVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQ  323 (359)
T ss_dssp             -------------EEES--SSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCE
T ss_pred             -------------eeec--cCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCcc
Confidence                         1110  022456777777532  3467788888888999888754

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.91  E-value=2.7e-23  Score=197.29  Aligned_cols=305  Identities=18%  Similarity=0.161  Sum_probs=174.3

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHhc--------CCCCEEEecCCCCCcH-------------HHHHh
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAV-THLL--------GTGEEIVAGDDLYGGT-------------DRLLS  111 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~~--------~~g~~Vlv~~~~~~~~-------------~~~~~  111 (386)
                      ...++++++++++|.+  +.+++++|++++.++ ..++        ++||+|+++.|+|+.+             ...+.
T Consensus        62 ~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~  141 (432)
T 3a9z_A           62 IINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLE  141 (432)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHH
Confidence            5678999999999986  455666667998754 4443        5898888888877653             23334


Q ss_pred             hhcccCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcC----------CEEEEe
Q 016612          112 RVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG----------ALLLVD  175 (386)
Q Consensus       112 ~~~~~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~----------~~li~D  175 (386)
                      ..++..|.+++.++.+      |++++++.+++++++|++++|+||||.+.|+++|.++|+++|          +++|+|
T Consensus       142 ~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livD  221 (432)
T 3a9z_A          142 HLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTD  221 (432)
T ss_dssp             HHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred             HHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEE
Confidence            4555678999988863      789999999989999999999999999999999999999999          999999


Q ss_pred             CCCCCCCcc-CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh-------hhhcCCCCChhhHHHHHhcC
Q 016612          176 NSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGV  247 (386)
Q Consensus       176 ~a~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  247 (386)
                      ++|+.+... +....+.|++++|+||++ |+   ++|+++++++.....+...       ........+....+++..++
T Consensus       222 ea~~~~~~~~~~~~~~~d~~~~s~~K~~-g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal  297 (432)
T 3a9z_A          222 AAQALGKRRVDVEDLGVDFLTIVGHKFY-GP---RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAA  297 (432)
T ss_dssp             CTTTTTTSCCCHHHHCCSEEEEEGGGTT-CC---SCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHH
T ss_pred             chhhhCCcccChhhcCCCEEEEehhHhc-CC---cceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHH
Confidence            999876542 112247899999999987 54   3799999865311111111       01111123333333333333


Q ss_pred             CcHH----HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHHHHhhcCcc
Q 016612          248 KTMA----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYF  322 (386)
Q Consensus       248 ~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~  322 (386)
                      +.+.    ...++..++.+.+.+.|++.+.+ .+...+..  +       .....+.+++|.+.+. .....+.+.+.  
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  365 (432)
T 3a9z_A          298 DLVSENCETYEAHMRDIRDYLEERLEAEFGK-RIHLNSRF--P-------GVERLPNTCNFSIQGSQLRGYMVLAQCQ--  365 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GEEESSCC--T-------TCCBCTTEEEEEECSTTCCHHHHHHHCS--
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHhccCC-cEEEeCCC--C-------cccCCCCEEEEEeCCCCCcHHHHHHHhc--
Confidence            3222    22333344444455555442111 11110100  0       0012244677777541 12445666553  


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      ++..+.|.....    ...   ..........|..    +++||||++    .++++++++.|++++++
T Consensus       366 ~i~~~~G~~~~~----~~~---~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~  427 (432)
T 3a9z_A          366 TLLASVGASCHS----DHE---DRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ  427 (432)
T ss_dssp             SEECBSSCGGGG----GGT---TSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEeccccccC----CCC---CCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            565555543211    000   0000111122332    478999997    37777888888777654

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.91  E-value=6.7e-24  Score=199.11  Aligned_cols=275  Identities=17%  Similarity=0.190  Sum_probs=176.8

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHH-hc--CCCCEEEecCCCCCcHHHHHhhhcccCCc---------
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTH-LL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGV---------  119 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~-~~--~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~---------  119 (386)
                      .+.++++++.++++++.  ++.+++++|++|+.+++. +.  .+||+|++.++.|++....+   +...|.         
T Consensus        86 ~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~---~~~~g~~~~~~~~~p  162 (395)
T 1vef_A           86 TPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGS---LSVTWEPKYREPFLP  162 (395)
T ss_dssp             CHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHH---HHTCCCHHHHGGGCS
T ss_pred             CHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhh---hhhcCCcccccccCC
Confidence            45789999999999954  467777888899875443 32  67899999999887543211   112222         


Q ss_pred             ---EEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCccC-----C
Q 016612          120 ---VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----P  186 (386)
Q Consensus       120 ---~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~  186 (386)
                         ++..++..|++++++.+++++++|++++++||||.+.+    +++|.++|+++|++||+|++|+. +....     .
T Consensus       163 ~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~  242 (395)
T 1vef_A          163 LVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH  242 (395)
T ss_dssp             CSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred             CCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhh
Confidence               25566667999999999989999999888999999887    99999999999999999999982 11111     1


Q ss_pred             CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHH
Q 016612          187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKI  264 (386)
Q Consensus       187 ~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  264 (386)
                      .....|++  |+||++++  |+++|+++++++ +.+.+...........++..++++..+++.+..  ..++..++.+.+
T Consensus       243 ~~~~~d~~--s~sK~~~~--g~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l  317 (395)
T 1vef_A          243 FGIVPDIL--TLAKALGG--GVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWF  317 (395)
T ss_dssp             HTCCCSEE--EECGGGGT--TSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             cCCCCCEE--EEcccccC--CCceEEEEehHH-HHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            12346766  78999964  578999998754 544332211122233455555555444443322  223344444555


Q ss_pred             HHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC-cceeccCCCCccccccccccccC
Q 016612          265 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSH  343 (386)
Q Consensus       265 ~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~~~~G~~~~~~~~p~~~~~  343 (386)
                      .+.+++..         .+      +. ...++.+.++++.++..  ...+.+.+. ..|+.+.++.             
T Consensus       318 ~~~l~~~~---------~~------~~-~~~~~~g~~~~~~~~~~--~~~l~~~l~~~~gi~v~~~~-------------  366 (395)
T 1vef_A          318 MEKLRAIP---------SP------KI-REVRGMGLMVGLELKEK--AAPYIARLEKEHRVLALQAG-------------  366 (395)
T ss_dssp             HHHHHTSC---------CT------TE-EEEEEETTEEEEEESSC--SHHHHHHHHHHHCEECEESS-------------
T ss_pred             HHHHHHhh---------cC------ce-EEEEEEEEEEEEEEcCh--HHHHHHHHHHHCCeEEecCC-------------
Confidence            55554432         00      00 01123467888888542  445666665 6677665431             


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 016612          344 ASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  381 (386)
Q Consensus       344 ~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  381 (386)
                                    ++++||+++.    ++++++++.|++++
T Consensus       367 --------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          367 --------------PTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             --------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             --------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence                          4569998764    56666666666654

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.91  E-value=3.2e-24  Score=204.17  Aligned_cols=319  Identities=13%  Similarity=0.082  Sum_probs=196.3

Q ss_pred             eeeccCCCCCC---CCCcccceeeeeeeecCCCCCCCCccccCC-C-CchHHHHHHHHHhhc--CC-CceEEeCcHHHHH
Q 016612           12 LLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLD--KA-DRALCFTSGMAAL   83 (386)
Q Consensus        12 ~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~--g~-~~~i~~~~gt~al   83 (386)
                      ..++++ ++.+   +|..+|.+.++......   ..  ..|+.. + .+.+.++++++++++  +. ++.+++++|++|+
T Consensus        44 ~~lD~~-~~~~~~~lG~~~p~v~~a~~~~~~---~~--~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~  117 (439)
T 3dxv_A           44 ELIDLS-GAWGAASLGYGHPAIVAAVSAAAA---NP--AGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDAN  117 (439)
T ss_dssp             EEEESS-TTTTTCTTCBSCHHHHHHHHHHHH---SC--SCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHH
T ss_pred             EEEECC-CchhhccCCCCCHHHHHHHHHHHH---hc--cCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHH
Confidence            456777 4444   77755555543221111   11  223322 3 358999999999998  55 4788888999998


Q ss_pred             HHHHHh---cCCCCEEEecCCCCCcHHHHHhhhcccCCc--------------EEEEeCCC----------CHHHHHhhh
Q 016612           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--------------VVKRVNTC----------DLDEVASAI  136 (386)
Q Consensus        84 ~~~~~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~--------------~~~~v~~~----------d~~~l~~~~  136 (386)
                      ..++..   ..+++.|++.++.|++.....   ....+.              .+..++..          |+++|++++
T Consensus       118 ~~al~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l  194 (439)
T 3dxv_A          118 EAAYRAIVKATGRSGVIAFAGAYHGCTVGS---MAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKL  194 (439)
T ss_dssp             HHHHHHHHHHHSCCEEEEETTCCCCSSHHH---HCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCCcHHH---HhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHH
Confidence            744332   346678888888886653221   111111              12334433          589999988


Q ss_pred             ----CCCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEecccccc
Q 016612          137 ----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFI  202 (386)
Q Consensus       137 ----~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~  202 (386)
                          .+++++|++++++|++|.+.+    +++|.++|++||++||+||+|+. +...     +......|++  |+||.+
T Consensus       195 ~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~  272 (439)
T 3dxv_A          195 AAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGL  272 (439)
T ss_dssp             HTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGG
T ss_pred             HhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchh
Confidence                567899999999999999988    99999999999999999999962 1111     1122345666  789999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecC
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYA  280 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  280 (386)
                      ++  |+|+|+++++ +++.+.+......... .++..+.++...++.+.  ...++..++.+.+.+.+++...    ..+
T Consensus       273 ~~--G~riG~~~~~-~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~  344 (439)
T 3dxv_A          273 GG--GLPLSAVIAP-AEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAK----RHP  344 (439)
T ss_dssp             GT--TSCCEEEEEE-HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH----HCT
T ss_pred             cC--CcceEEEEEC-HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----hCC
Confidence            63  7899999987 4454433322222233 55555555555443221  1233344444455555443210    001


Q ss_pred             CCCCCCchhhhhhccCCCCceEEEEe--------CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHH
Q 016612          281 GLPEHPGHELHYSQAKGAGSVLSFLT--------GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  352 (386)
Q Consensus       281 ~l~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~  352 (386)
                      .+          ...++.+.++++.+        ++......+.+.+...|+.+.++..                     
T Consensus       345 ~~----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------  393 (439)
T 3dxv_A          345 LI----------GDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM---------------------  393 (439)
T ss_dssp             TE----------EEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST---------------------
T ss_pred             Ce----------EEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC---------------------
Confidence            00          01134577888876        4455567788888777887665432                     


Q ss_pred             hcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          353 ARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       353 ~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                          .++++||+++    .++++++++.|++++++.
T Consensus       394 ----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          394 ----NGNVLEFTPPLTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             ----TSCEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             ----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                2467999864    377888888888888653

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.91  E-value=7.8e-23  Score=191.85  Aligned_cols=199  Identities=15%  Similarity=0.113  Sum_probs=137.7

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcC----CCceEE--eCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhhc
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~  114 (386)
                      .+.|.+. |.+ +++++.+++....+    .++.++  +++|++++.++..   .+.+||+|++++|+|+++.    ..+
T Consensus        62 ~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~  137 (396)
T 2q7w_A           62 TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHK----SVF  137 (396)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHH----HHH
T ss_pred             ccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHH----HHH
Confidence            4457655 654 67777766644322    345555  7777799875543   3579999999999999886    445


Q ss_pred             ccCCcEEEEeCC---C----CHHHHHhhhCC---CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          115 PKTGVVVKRVNT---C----DLDEVASAIGP---WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       115 ~~~g~~~~~v~~---~----d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      +..|.+++.++.   +    |++++++.+++   +++++++++|+||||.+.+   +++|.++|+++|+++|+||+|+..
T Consensus       138 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~  217 (396)
T 2q7w_A          138 NSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGF  217 (396)
T ss_dssp             HHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTS
T ss_pred             HHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence            567888888876   3    89999998874   4778888999999999985   678999999999999999998753


Q ss_pred             Ccc------CC--C-C-CCccEEEeccccccccCCCceEEEEEE--cCh----hHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          182 VLS------RP--L-E-LGADIVMHSATKFIAGHSDVMAGVLAV--KGE----RLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       182 ~~~------~~--~-~-~~~di~~~S~sK~~~g~~g~~~G~i~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      ...      ..  . . .+.+++++|+||.+ |++|+|+||+++  +++    .+.+.+...........+...+.++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  296 (396)
T 2q7w_A          218 ARGLEEDAEGLRAFAAMHKELIVASSYSXNF-GLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVAT  296 (396)
T ss_dssp             SSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred             cCCccchhHHHHHHHhcCCcEEEEEeccccc-cccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHH
Confidence            321      01  1 1 24578999999999 566899999997  334    233333322222222335656655555


Q ss_pred             cCCc
Q 016612          246 GVKT  249 (386)
Q Consensus       246 ~~~~  249 (386)
                      .++.
T Consensus       297 ~l~~  300 (396)
T 2q7w_A          297 ILSN  300 (396)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            5443

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.91  E-value=4.1e-22  Score=186.64  Aligned_cols=301  Identities=17%  Similarity=0.155  Sum_probs=196.1

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHh-------cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-------LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~-------~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      .+...++++.+++++|.++.+++++|++++. ++.++       +++||+|+++.++|+++...    ++..|.+++.++
T Consensus        33 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~----~~~~g~~~~~~~  108 (390)
T 3b8x_A           33 GEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYP----LQQYGLRVKFVD  108 (390)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEEC
T ss_pred             ChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEe
Confidence            3578899999999999999999999999887 45556       68899999999999988644    345788888887


Q ss_pred             CC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCc--cEEEec
Q 016612          126 TC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHS  197 (386)
Q Consensus       126 ~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~--di~~~S  197 (386)
                      .+      |++++++.+++++++|++++   ++|...++++|.++|+++|+++|+|++|+.+...+....+.  |+.++|
T Consensus       109 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s  185 (390)
T 3b8x_A          109 IDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFS  185 (390)
T ss_dssp             BCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred             cCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEEEE
Confidence            64      89999999998999999874   56777999999999999999999999999776544433444  555544


Q ss_pred             c--ccccccCCCceEEEEEEcChhHHHHHHHhhhhc-----------------------------C--CCCChhhHHHHH
Q 016612          198 A--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-----------------------------G--SGLAPFDCWICL  244 (386)
Q Consensus       198 ~--sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~-----------------------------~--~~~~~~~~~~~~  244 (386)
                      +  +|.+.++   ++|+++++++.+.+.+.......                             +  ..+++..+++.+
T Consensus       186 ~~~~k~~~~g---~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l  262 (390)
T 3b8x_A          186 SFYSNHIATM---EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGI  262 (390)
T ss_dssp             CCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHH
T ss_pred             ccCCCCCccC---CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHH
Confidence            2  4544332   36999988766655554433211                             1  114556666555


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhcCcc
Q 016612          245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYF  322 (386)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~  322 (386)
                      ..++.+....++..++.+.+.+.|++.+.+   .....           ........+.+.++.  ....+.+.+.|...
T Consensus       263 ~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~  328 (390)
T 3b8x_A          263 EQLKKLPRFISVRRKNAEYFLDKFKDHPYL---DVQQE-----------TGESSWFGFSFIIKKDSGVIRKQLVENLNSA  328 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSE---EECCC-----------CSBCCCCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---ccCCC-----------CCCcccEEEEEEecCcCcccHHHHHHHHHHC
Confidence            555555555556666666676666654321   11110           001112235555542  12356677777777


Q ss_pred             eeccCCCCccccccc-cccc----c-CCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          323 SITVSFGSVKSLISM-PCFM----S-HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       323 gi~~~~G~~~~~~~~-p~~~----~-~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      |+.++.....+.+.. |...    . ...++.....    ..+.+|++++...+++.++.+.++|+
T Consensus       329 gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~~~~t~~di~~i~~~l~  390 (390)
T 3b8x_A          329 GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYL----DKNGLFVGNHQIELFDEIDYLREVLK  390 (390)
T ss_dssp             TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHH----HHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred             CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHH----hcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence            887665221122222 3211    0 1222222111    12459999999888888888887763

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.90  E-value=1e-21  Score=181.39  Aligned_cols=276  Identities=16%  Similarity=0.146  Sum_probs=176.7

Q ss_pred             CchHHHHHHHHHhhcCCCc-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC--CcEEEEeCCC--
Q 016612           54 NPTRDALESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNTC--  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~--g~~~~~v~~~--  127 (386)
                      .+.++++++++++++|.+. .+++++|++++. ++..++++||+|++++|.|+++...  ..+...  |.+++.++.+  
T Consensus        42 ~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  119 (356)
T 1v72_A           42 DELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGPAA  119 (356)
T ss_dssp             SHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCGGG
T ss_pred             chHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCCCC
Confidence            3578999999999999654 577788899986 4555778999999999988765321  003334  8889888864  


Q ss_pred             --CHHHHHh-hhCC-------CceEEEEeCCCCCCcccc---cHHHHHHHHHHcCCEEEEeCCCCCC------CccCCC-
Q 016612          128 --DLDEVAS-AIGP-------WTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSP------VLSRPL-  187 (386)
Q Consensus       128 --d~~~l~~-~~~~-------~~~~v~~~~~~nptG~~~---~l~~i~~la~~~~~~li~D~a~~~~------~~~~~~-  187 (386)
                        |++++++ .+++       ++++|++++|+| ||.++   ++++|.++|++||+++|+|++|+.+      ...... 
T Consensus       120 ~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~  198 (356)
T 1v72_A          120 KLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT  198 (356)
T ss_dssp             CCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT
T ss_pred             eEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh
Confidence              8999999 8875       689999999987 99965   5899999999999999999998632      111111 


Q ss_pred             -CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCC--hhhHHHHHhcCCc--HHHHHHHHHHHHH
Q 016612          188 -ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA--PFDCWICLRGVKT--MALRVEKQQDNAQ  262 (386)
Q Consensus       188 -~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~  262 (386)
                       ..+.|+++.|+||+ ++|.|  +|+++++ +++.+.+.......+....  ..........++.  +....++..++.+
T Consensus       199 ~~~~~d~~~~s~sK~-g~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  274 (356)
T 1v72_A          199 WKAGVDALSFGATKN-GVLAA--EAIVLFN-TSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQ  274 (356)
T ss_dssp             GGGTCCEEEECCGGG-TCSSC--EEEEESS-GGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             hhhcCCEEEEecccC-CCcCc--cEEEEEC-HHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             13678999999999 45443  4688775 5565555444332222111  1222112223322  2223344455556


Q ss_pred             HHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccccccc
Q 016612          263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS  342 (386)
Q Consensus       263 ~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~  342 (386)
                      .+.+.|++.+              +..+..   +..++++++.++.     .+.+.+...|+.+.+|..           
T Consensus       275 ~l~~~L~~~~--------------g~~~~~---~~~~~~~~~~~~~-----~~~~~l~~~gi~v~~g~~-----------  321 (356)
T 1v72_A          275 RLAQGLEGLG--------------GVEVLG---GTEANILFCRLDS-----AMIDALLKAGFGFYHDRW-----------  321 (356)
T ss_dssp             HHHHHHTTCT--------------TEEEES---CCCSSEEEEEECH-----HHHHHHHHTTCBCBCSSS-----------
T ss_pred             HHHHHHhhCC--------------CcEEcc---CCCccEEEEEcCH-----HHHHHHHhcCeEEecccc-----------
Confidence            6666665432              221111   1235677777652     455555556777665541           


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          343 HASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                                  +  ++++|++++.    ++++++++.|++++++
T Consensus       322 ------------~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          322 ------------G--PNVVRFVTSFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             ------------S--TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred             ------------C--CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence                        1  3569999864    5666777777766654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.90  E-value=6.2e-23  Score=189.75  Aligned_cols=309  Identities=14%  Similarity=0.095  Sum_probs=187.4

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CC-chHHHHHHHHHhhcCCC--ceEEeCcHHHHHH-H
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKAD--RALCFTSGMAALA-A   85 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~   85 (386)
                      +..++++  .++.|..++.+.++.....   .     .|... |. ++++++++++++++|.+  +.+++++|++++. +
T Consensus        13 p~~i~l~--~~~~~~~~~~v~~a~~~~~---~-----~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~   82 (359)
T 1svv_A           13 PKPYSFV--NDYSVGMHPKILDLMARDN---M-----TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIA   82 (359)
T ss_dssp             --CEECS--CSCSSCCCHHHHHHHHHHT---T-----CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHH
T ss_pred             CeeEEec--CCCcCCCCHHHHHHHHHHH---h-----hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHH
Confidence            3456666  3555544444444321111   1     24333 44 48999999999999876  4666777889987 4


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----CHHHHHhhhCCC-------ceEEEEeCCCCCCcc
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPW-------TKLVWVESPTNPRQQ  154 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~~~~~-------~~~v~~~~~~nptG~  154 (386)
                      +..++++||+|++++|+|+++...  ..++..|.+++.++.+    |++++++.++++       +++|++++| ||||.
T Consensus        83 ~~~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~  159 (359)
T 1svv_A           83 CSLALRPWEAVIATQLGHISTHET--GAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGT  159 (359)
T ss_dssp             HHHHCCTTEEEEEETTSHHHHSST--THHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSC
T ss_pred             HHHHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCce
Confidence            555788999999999999887431  1245678889888865    589999988754       899999999 79999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCC---CCCCccCCCC-----CCccEEEeccccccccCCCceEEEEEEcChhHHHH
Q 016612          155 ICD---IRKIAEMAHAHGALLLVDNSI---MSPVLSRPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (386)
Q Consensus       155 ~~~---l~~i~~la~~~~~~li~D~a~---~~~~~~~~~~-----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~  223 (386)
                      +.|   +++|.++|+++|+++|+|++|   +.+.......     ...|+++.|++|+. ++.|  .|+++++++ +.+.
T Consensus       160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~--~g~l~~~~~-~~~~  235 (359)
T 1svv_A          160 QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFG--EALIILNDA-LKPN  235 (359)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSC--EEEEECSGG-GCTT
T ss_pred             ecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCc--eEEEEEccc-HHHH
Confidence            998   899999999999999999998   3333221111     35789999999984 5544  688888644 4333


Q ss_pred             HHHhhhhcCC--CCChhhHHHHHhcCCc--HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCC
Q 016612          224 LYFLQNAEGS--GLAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  299 (386)
Q Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~  299 (386)
                      +.......+.  .............+..  +....++..++.+.+.+.+ +.+        ++.      +..   +..+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~--------~~~------~~~---~~~~  297 (359)
T 1svv_A          236 ARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EAC--------GIR------LAW---PSAS  297 (359)
T ss_dssp             HHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHT--------TCC------BSS---CCSS
T ss_pred             HHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccC--------CeE------Ecc---CCcc
Confidence            3332211121  1111111111222322  2334455555666666666 322        111      110   1124


Q ss_pred             ceEEEEeCCHHhHHHHHhhcCcc-eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHH
Q 016612          300 SVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLI  374 (386)
Q Consensus       300 ~~~~~~~~~~~~~~~l~~~l~~~-gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i  374 (386)
                      .++++.++     .++.+.+... |+.+ ++..      +                 ..++++|++++.    +++++++
T Consensus       298 ~~~~~~~~-----~~~~~~l~~~~gi~v-~~~~------~-----------------~~~~~iRi~~~~~~~~~~i~~~~  348 (359)
T 1svv_A          298 NQLFPILE-----NTMIAELNNDFDMYT-VEPL------K-----------------DGTCIMRLCTSWATEEKECHRFV  348 (359)
T ss_dssp             SEECBEEE-----HHHHHHHTTTEECEE-EEEE------T-----------------TTEEEEEEECCTTCCHHHHHHHH
T ss_pred             ceEEEEcC-----HHHHHHHHHhcCEEE-Eecc------c-----------------CCCceEEEEccCcCCHHHHHHHH
Confidence            45555554     2455666555 7755 2110      0                 124579999864    5666666


Q ss_pred             HHHHHHHhc
Q 016612          375 SDLDKALRT  383 (386)
Q Consensus       375 ~~l~~~l~~  383 (386)
                      +.|++++++
T Consensus       349 ~~l~~~~~~  357 (359)
T 1svv_A          349 EVLKRLVAS  357 (359)
T ss_dssp             HHHHHC---
T ss_pred             HHHHHHHhc
Confidence            666666654

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.90  E-value=2.7e-24  Score=203.52  Aligned_cols=284  Identities=18%  Similarity=0.165  Sum_probs=176.3

Q ss_pred             hHHHHHHHHHhhcC--C-CceEEeC-cHHHHHHH-HHHh--------cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEE
Q 016612           56 TRDALESLLAKLDK--A-DRALCFT-SGMAALAA-VTHL--------LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (386)
Q Consensus        56 ~~~~l~~~l~~~~g--~-~~~i~~~-~gt~al~~-~~~~--------~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~  122 (386)
                      +++++.+++....+  . ++.|+++ ++++++.+ +.++        +++||+|+++.|.|+++...    ++..|.+++
T Consensus       105 lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~----~~~~g~~~~  180 (427)
T 2hox_A          105 LEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ----TKYFDKKGY  180 (427)
T ss_dssp             HHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH----HHHSCBTTE
T ss_pred             HHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHH----HHHcCCeee
Confidence            56666666654332  2 2345454 45689874 4557        78999999999999888643    445566655


Q ss_pred             EeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       123 ~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                      .+. .|+++|++.+++++++|++++|+||||.+.+ + +   ++  ++..+.|+.+..+... .....+.+++++|+||.
T Consensus       181 ~~~-~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~  252 (427)
T 2hox_A          181 VWA-GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKF  252 (427)
T ss_dssp             EEE-EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHH
T ss_pred             eec-CCHHHHHHhhcCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCccccCCCceEEEEeChhc
Confidence            444 3788898888888999999999999999999 4 2   23  5678999887532211 11124689999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc---------------HHHHHHHHHHHHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---------------MALRVEKQQDNAQKIAE  266 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~  266 (386)
                      + |++|+|+||++++++.+.+.+.........+.+...+.++...+..               +....+.+.++.+.+.+
T Consensus       253 ~-g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  331 (427)
T 2hox_A          253 T-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITA  331 (427)
T ss_dssp             T-SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            8 5678999999996667777776666554455666655554333321               12233455556666666


Q ss_pred             HHhhCCCcceEecCCCC--C-CCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhcCcceeccCCCCccccccccccc
Q 016612          267 FLASHPRVKKVNYAGLP--E-HPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~--~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      .|++.+.+   ....+.  . ..+..+  ..+ ..+.++++.++.  .+...++++   ..|+.+++|..+.        
T Consensus       332 ~L~~~~g~---~~~~~~~~~~~~~~~~--~~p-~~g~f~~~~~~~~~~~~~~~ll~---~~gI~v~pg~~f~--------  394 (427)
T 2hox_A          332 LLDQSDRF---SYQELPQSEYCNYFRR--MRP-PSPSYAWVKCEWEEDKDCYQTFQ---NGRINTQNGVGFE--------  394 (427)
T ss_dssp             HHTTSSSE---ECCCCCSCEEETTTTE--EEC-CCCSEEEEEECSGGGCSHHHHHH---HTTEECEEGGGGT--------
T ss_pred             HHHhCcCc---cccccccccccccccc--cCC-CCceEEEEECCCcHHHHHHHHHH---HCCEEEcCCCccC--------
Confidence            66654321   110000  0 000111  111 235667777753  223333332   4577777766421        


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          342 SHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                                    ..+++||||++.  +++++.++.|++++++
T Consensus       395 --------------~~~~~~Ris~~~~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          395 --------------ASSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             --------------SCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             --------------CCCCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence                          135789999974  5567777777777754

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.90  E-value=4.6e-22  Score=188.39  Aligned_cols=164  Identities=21%  Similarity=0.222  Sum_probs=131.6

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------C
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------D  128 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d  128 (386)
                      +...++++.+++++|.++.+++++|++++.+++..+.+||+|++++|+|+++..    .++..|.+++.++.+      |
T Consensus        52 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~~gd~Vlv~~~~~~~~~~----~~~~~G~~~~~v~~~~~~~~~d  127 (424)
T 2po3_A           52 PLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAGLTGEVIMPSMTFAATPH----ALRWIGLTPVFADIDPDTGNLD  127 (424)
T ss_dssp             HHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHTCCSEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTSSBC
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCEEEECCCccHHHHH----HHHHcCCEEEEEecCCCcCCcC
Confidence            567889999999999988888899999998665555689999999999998864    445678899888754      7


Q ss_pred             HHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC--CCCCCccEEEeccc--ccccc
Q 016612          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSAT--KFIAG  204 (386)
Q Consensus       129 ~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~--~~~~~~di~~~S~s--K~~~g  204 (386)
                      ++++++.+++++++|++++   |+|...++++|.++|+++|+++|+|++|+.+...+  ......|++++|+|  |++++
T Consensus       128 ~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~  204 (424)
T 2po3_A          128 PDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNA  204 (424)
T ss_dssp             HHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC
T ss_pred             HHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccC
Confidence            8999999988899999754   79999999999999999999999999998654321  12222589999999  77644


Q ss_pred             CCCceEEEEEEcChhHHHHHHHhh
Q 016612          205 HSDVMAGVLAVKGERLAKELYFLQ  228 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~~  228 (386)
                         .++|+++++++++.+.+....
T Consensus       205 ---~~~G~~v~~~~~l~~~l~~~~  225 (424)
T 2po3_A          205 ---FEGGAVVTDDADLAARIRALH  225 (424)
T ss_dssp             ---SSCEEEEESCHHHHHHHHHHH
T ss_pred             ---CCCeEEEeCCHHHHHHHHHHH
Confidence               478999987566666555443

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.90  E-value=1.4e-22  Score=192.58  Aligned_cols=282  Identities=13%  Similarity=0.124  Sum_probs=182.6

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHH-hc---------CCC-CEEEecCCCCCcHHHHHhhhcc-------
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LL---------GTG-EEIVAGDDLYGGTDRLLSRVTP-------  115 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~-~~---------~~g-~~Vlv~~~~~~~~~~~~~~~~~-------  115 (386)
                      .+.+.++++.+++++|.++.++++||++|+.+++. +.         .+| |+|++.++.|++..........       
T Consensus       117 ~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~  196 (439)
T 2oat_A          117 NNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG  196 (439)
T ss_dssp             ESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTT
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccC
Confidence            35789999999999998888899999999874433 32         356 8999999998765322112111       


Q ss_pred             --cCCcEEEEeCCCCHHHHHhhh-CCCceEEEEeCCCCCCcccc----cHHHHHHHHHHcCCEEEEeCCCCC-CCcc---
Q 016612          116 --KTGVVVKRVNTCDLDEVASAI-GPWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLS---  184 (386)
Q Consensus       116 --~~g~~~~~v~~~d~~~l~~~~-~~~~~~v~~~~~~nptG~~~----~l~~i~~la~~~~~~li~D~a~~~-~~~~---  184 (386)
                        ....++..++..|++++++.+ ++++++|++++.++++|.+.    ++++|.++|++||+++|+||+|.. +...   
T Consensus       197 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~  276 (439)
T 2oat_A          197 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL  276 (439)
T ss_dssp             SCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred             CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch
Confidence              011456777878999999999 47888999888888899876    699999999999999999999952 1111   


Q ss_pred             --CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHH
Q 016612          185 --RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQD  259 (386)
Q Consensus       185 --~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  259 (386)
                        +......|++  |+||++++  | +++|++++++ ++.+.+...........++..++++...++.+..  ..++..+
T Consensus       277 ~~~~~~~~~Di~--t~sK~l~~--G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  351 (439)
T 2oat_A          277 AVDYENVRPDIV--LLGKALSG--GLYPVSAVLCDD-DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK  351 (439)
T ss_dssp             GGGGGTCCCSEE--EECGGGGT--TSSCCEEEEECH-HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             hHHHhCCCCcEE--EecccccC--CCCCeEEEEECH-HHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence              1122346776  78999964  6 7899999974 4544333221222234556666655555443322  1223333


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHhhcCcceeccCCCCccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISM  337 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~~~~G~~~~~~~~  337 (386)
                      +.+.+.+.+++.         ++   +   +. ...++.+.++++.+.+.  ....++.+.+...|+.+.++        
T Consensus       352 ~~~~l~~~L~~l---------~~---~---~~-~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~--------  407 (439)
T 2oat_A          352 LGIILRNELMKL---------PS---D---VV-TAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT--------  407 (439)
T ss_dssp             HHHHHHHHHTTS---------CT---T---TE-EEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS--------
T ss_pred             HHHHHHHHHHHh---------cC---C---Cc-EEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC--------
Confidence            333333333321         11   1   11 11234578888888543  23556777777778876542        


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          338 PCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       338 p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                         .++++|++++    .++++++++.|++++++
T Consensus       408 -------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          408 -------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             -------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence                               1356999875    47788888888887764

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.90  E-value=8e-23  Score=193.97  Aligned_cols=284  Identities=13%  Similarity=0.118  Sum_probs=178.7

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh-c---------CCC-CEEEecCCCCCcHHHHHhhhcc-------
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL-L---------GTG-EEIVAGDDLYGGTDRLLSRVTP-------  115 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~-~---------~~g-~~Vlv~~~~~~~~~~~~~~~~~-------  115 (386)
                      .+.+.++++.+++++|.++.++++||++|+.+++.. .         .+| |+|++.++.|++..........       
T Consensus       106 ~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~  185 (433)
T 1z7d_A          106 SVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSN  185 (433)
T ss_dssp             EHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------
T ss_pred             CHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccccc
Confidence            357889999999999988899999999998744332 2         467 9999999999775321111111       


Q ss_pred             --cCCcEEEEeCCCCHHHHHhhh-CCCceEEEEeCCCCCCcccc----cHHHHHHHHHHcCCEEEEeCCCCC-CCcc---
Q 016612          116 --KTGVVVKRVNTCDLDEVASAI-GPWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLS---  184 (386)
Q Consensus       116 --~~g~~~~~v~~~d~~~l~~~~-~~~~~~v~~~~~~nptG~~~----~l~~i~~la~~~~~~li~D~a~~~-~~~~---  184 (386)
                        .....+..++..|++++++++ ++++++|++++.+|++|.+.    ++++|.++|+++|++||+||+|+. +...   
T Consensus       186 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~  265 (433)
T 1z7d_A          186 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL  265 (433)
T ss_dssp             ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred             CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch
Confidence              001356677778999999999 57889999888888899875    699999999999999999999962 1111   


Q ss_pred             --CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHH
Q 016612          185 --RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQD  259 (386)
Q Consensus       185 --~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  259 (386)
                        +......|++  |+||++++  | +++|++++++ ++.+.+...........++..++++...++.+..  ..++..+
T Consensus       266 ~~~~~~~~~di~--t~sK~l~~--G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  340 (433)
T 1z7d_A          266 CVHHYNVKPDVI--LLGKALSG--GHYPISAVLAND-DIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK  340 (433)
T ss_dssp             GGGGGTCCCSEE--EECGGGGT--TSSCCEEEEECH-HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             hhHhcCCCCCEE--EECccccC--CCCCeEEEEECH-HHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence              1112346776  78999963  6 7899999874 4544332221222234556666555555443321  2233344


Q ss_pred             HHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHHHHhhcCcceeccCCCCcccccccc
Q 016612          260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMP  338 (386)
Q Consensus       260 ~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~~~~G~~~~~~~~p  338 (386)
                      +.+.+.+.+++..       .+++   ..    ...++.+.++++.+... ....++.+.+...|+.+.++         
T Consensus       341 ~~~~l~~~L~~l~-------~~~~---~~----~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~---------  397 (433)
T 1z7d_A          341 LGGPFLENLKREL-------KDSK---IV----RDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV---------  397 (433)
T ss_dssp             HHHHHHHHHHHHH-------TTCT---TE----EEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE---------
T ss_pred             HHHHHHHHHHHHH-------HhCC---Ce----EEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC---------
Confidence            4444444444320       1111   10    11134578889988543 23566777777778876542         


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                        .++++|++++    .++++++++.|++++++
T Consensus       398 ------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  428 (433)
T 1z7d_A          398 ------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVKF  428 (433)
T ss_dssp             ------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence                              1345999875    37788888888877764

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.90  E-value=2.5e-22  Score=191.77  Aligned_cols=287  Identities=12%  Similarity=-0.027  Sum_probs=186.1

Q ss_pred             hHHHHHHHHHhhcCCC--c-----eEEeCcHHHHHH-HHHHhcC--------CC-----CEEEecCCCCCcHHHHHhhhc
Q 016612           56 TRDALESLLAKLDKAD--R-----ALCFTSGMAALA-AVTHLLG--------TG-----EEIVAGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~-----~i~~~~gt~al~-~~~~~~~--------~g-----~~Vlv~~~~~~~~~~~~~~~~  114 (386)
                      +.+++++++++++|.+  .     .+++++||+|+. ++.++.+        +|     ++|++++ .|.++.    ..+
T Consensus        82 l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~----~~~  156 (452)
T 2dgk_A           82 IDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH----KFA  156 (452)
T ss_dssp             HHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH----HHH
T ss_pred             HHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH----HHH
Confidence            5778889999999986  2     577788888876 4444432        55     5899999 887775    556


Q ss_pred             ccCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc------CCEEEEeCCCCCCC
Q 016612          115 PKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPV  182 (386)
Q Consensus       115 ~~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------~~~li~D~a~~~~~  182 (386)
                      +..|++++.++.+      |+++|+++++++|++|++++|+||||.+.|+++|.++|+++      |+++++|++|+.+.
T Consensus       157 ~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~  236 (452)
T 2dgk_A          157 RYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL  236 (452)
T ss_dssp             HHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred             HHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHH
Confidence            6789999999863      89999999999999999999999999999999999999995      99999999998653


Q ss_pred             c---c-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHH-HHHHHhhhhc----------CCCC--ChhhHH
Q 016612          183 L---S-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAE----------GSGL--APFDCW  241 (386)
Q Consensus       183 ~---~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~-~~~~~~~~~~----------~~~~--~~~~~~  241 (386)
                      .   .     +....++|++++|+||++.+|.+  +|+++++++.+. +.+.......          +...  .....+
T Consensus       237 ~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  314 (452)
T 2dgk_A          237 APFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQY  314 (452)
T ss_dssp             HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHH
T ss_pred             HHhhCccchhhcCCCCCcEEEECcccccCCCCC--eEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHH
Confidence            2   1     11123789999999998766554  899999765432 2221100000          0100  112223


Q ss_pred             HHHhc--CCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH----HhHHHH
Q 016612          242 ICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL----ALSKHV  315 (386)
Q Consensus       242 ~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~l  315 (386)
                      +.+..  .+.+..+.++..++++.+.+.|++.+.+ .+..++.            +....++++|.+++.    .....+
T Consensus       315 aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~~~------------~~~~~~~v~f~~~~~~~~~~~~~~l  381 (452)
T 2dgk_A          315 YEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPY-EFICTGR------------PDEGIPAVCFKLKDGEDPGYTLYDL  381 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSE-EEEEECC------------TTTBSSEEEEEECTTCCCSCCHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCe-EEecCCC------------CCCCeEEEEEEecCcccccCCHHHH
Confidence            33222  1233445556666777777777765422 1111110            012457888887542    123566


Q ss_pred             HhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                      .+.+...|+.++...      .|...              .+.+++|++++.    ++++++++.|+++++
T Consensus       382 ~~~L~~~Gi~v~~~~------~~~~~--------------~~~~~lRis~~~~~t~e~id~li~~l~~~~~  432 (452)
T 2dgk_A          382 SERLRLRGWQVPAFT------LGGEA--------------TDIVVMRIMCRRGFEMDFAELLLEDYKASLK  432 (452)
T ss_dssp             HHHHHHTTCBCCEEE------CSTTC--------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCeeeeee------CCccc--------------CCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            666666676543210      11000              024579999975    667777777776654

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.89  E-value=1.5e-21  Score=184.31  Aligned_cols=287  Identities=17%  Similarity=0.128  Sum_probs=177.0

Q ss_pred             HHHHHHHHHhhcCCCc-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhh-hcccCCcEEEEeCC-----CC
Q 016612           57 RDALESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNT-----CD  128 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~-~~~~~g~~~~~v~~-----~d  128 (386)
                      .+.+++.+++++|.+. .+++++|++++. ++.+++++||+|++++|+|+++...... .....+..++.++.     .|
T Consensus        73 ~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  152 (417)
T 3n0l_A           73 ETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRID  152 (417)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCC
T ss_pred             HHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcC
Confidence            3445668899999884 488899998887 5566899999999999999876432111 11123445555554     38


Q ss_pred             HHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCc-----cCCCCCCccEEEecccccc
Q 016612          129 LDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFI  202 (386)
Q Consensus       129 ~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~-----~~~~~~~~di~~~S~sK~~  202 (386)
                      ++++++.++ +++++|++++++|  |.+.|+++|.++|++||+++|+|++++.+..     ..... +.|++++|+||++
T Consensus       153 ~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l  229 (417)
T 3n0l_A          153 YEKVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTL  229 (417)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTT
T ss_pred             HHHHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCcccc
Confidence            999999997 6899999888886  8899999999999999999999999864432     11222 5799999999998


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhhcCC-CCChhhHHHHHhc----C-CcHHHHHHHHHHHHHHHHHHHhhCCCcce
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICLRG----V-KTMALRVEKQQDNAQKIAEFLASHPRVKK  276 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  276 (386)
                      +|+   |+|+++++++.+.+.+......... +.......+...+    . ..+....++..++.+.+.+.|++..    
T Consensus       230 ~g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----  302 (417)
T 3n0l_A          230 RGP---RGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRK----  302 (417)
T ss_dssp             CSC---SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred             CCC---CeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC----
Confidence            553   5799999866676666554432222 2222222221111    1 2234455556666677777776521    


Q ss_pred             EecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcC
Q 016612          277 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  355 (386)
Q Consensus       277 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~  355 (386)
                           +      .+..  ....+.++++.+.. ......+.+.+...|+.++.+..      |.....           .
T Consensus       303 -----~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~------~~~~~~-----------~  352 (417)
T 3n0l_A          303 -----F------KLVS--DGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTV------PGEIRS-----------P  352 (417)
T ss_dssp             -----C------EEGG--GSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCC------TTCCSC-----------T
T ss_pred             -----c------eecc--CCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEecccc------CCCCcc-----------c
Confidence                 1      1110  01235567777642 11345555666666776654321      100000           1


Q ss_pred             CCCCeEEEEec--------cCChHHHHHHHHHHHhc
Q 016612          356 LTEDLVRISVG--------IEDVNDLISDLDKALRT  383 (386)
Q Consensus       356 ~~~~~iRis~~--------~~~~~~~i~~l~~~l~~  383 (386)
                      .....+|+++.        .++++++++.|+++++.
T Consensus       353 ~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~  388 (417)
T 3n0l_A          353 FITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD  388 (417)
T ss_dssp             TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            12456999974        37788888888888865

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.89  E-value=3.5e-22  Score=191.91  Aligned_cols=283  Identities=15%  Similarity=0.096  Sum_probs=180.7

Q ss_pred             hHHHHHHHHHhhcCCCc-----eEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhh----hcccCC--cEEEE
Q 016612           56 TRDALESLLAKLDKADR-----ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSR----VTPKTG--VVVKR  123 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~-----~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~----~~~~~g--~~~~~  123 (386)
                      +.+.+++++++++|.+.     .+++++|++++.+ +.++++|||+|+++++.|+++..++..    .+...|  .+.+.
T Consensus        91 le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~  170 (483)
T 1rv3_A           91 LETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMA  170 (483)
T ss_dssp             HHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEE
T ss_pred             HHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEE
Confidence            35566699999999872     3889999977664 777899999999999999887532110    122222  44555


Q ss_pred             eCC------CCHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCCCc
Q 016612          124 VNT------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGA  191 (386)
Q Consensus       124 v~~------~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~  191 (386)
                      ++.      .|+++++++++ ++|++|++ +++|++ .+.|+++|.++|+++|+++++|++|+.+...     .+.. ++
T Consensus       171 ~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~  247 (483)
T 1rv3_A          171 YKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HC  247 (483)
T ss_dssp             ECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TC
T ss_pred             CccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CC
Confidence            421      38999999998 79999999 999988 8899999999999999999999998754322     2222 68


Q ss_pred             cEEEeccccccccCCCceEEEEEEcCh--------------hHHHHHHHhhhhcCC-CCChhhHHHH---Hh-cC-CcHH
Q 016612          192 DIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEGS-GLAPFDCWIC---LR-GV-KTMA  251 (386)
Q Consensus       192 di~~~S~sK~~~g~~g~~~G~i~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~~~---~~-~~-~~~~  251 (386)
                      |++++|+||++.||   |+|+++++++              .+.+.+......... +........+   +. .. ..+.
T Consensus       248 div~~s~~K~l~Gp---rgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~  324 (483)
T 1rv3_A          248 HVVTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK  324 (483)
T ss_dssp             SEEEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHH
T ss_pred             cEEEecCcccCCCC---CceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHH
Confidence            99999999999765   4699999865              233333222111111 1111111111   11 11 1345


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHHHHhhcCcceeccC---
Q 016612          252 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVS---  327 (386)
Q Consensus       252 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~~~---  327 (386)
                      ...++..++++.+.+.|.+.. + .             +...  .....++++.+... ...+.+.+.|...|+.++   
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~g-~-~-------------~~~~--~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~  387 (483)
T 1rv3_A          325 EYQRQVVANCRALSAALVELG-Y-K-------------IVTG--GSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNT  387 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-C-E-------------EGGG--SCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-C-E-------------eccC--CCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCC
Confidence            556667778888888877642 1 1             1100  00123455555321 123445555555677766   


Q ss_pred             -CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--------cCChHHHHHHHHHHHhc
Q 016612          328 -FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDKALRT  383 (386)
Q Consensus       328 -~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i~~l~~~l~~  383 (386)
                       +|...                      ...++++|||++        .++++++++.|.++++.
T Consensus       388 ~pg~~~----------------------~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          388 CPGDKS----------------------ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             CSSCSC----------------------TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCc----------------------CCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence             54421                      013567999996        36788888888877754

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.89  E-value=2.1e-22  Score=190.40  Aligned_cols=276  Identities=13%  Similarity=0.094  Sum_probs=172.0

Q ss_pred             CchHHHHHHHHHhhcCCC---ceEEeCcHHHHHHHHHH-hcC-CCCEEEecCCCCCcHHHHHhhhcc----------cCC
Q 016612           54 NPTRDALESLLAKLDKAD---RALCFTSGMAALAAVTH-LLG-TGEEIVAGDDLYGGTDRLLSRVTP----------KTG  118 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~---~~i~~~~gt~al~~~~~-~~~-~g~~Vlv~~~~~~~~~~~~~~~~~----------~~g  118 (386)
                      .+.+.++++.+++++|.+   +++++++|++++..++. +.. +||+|++.+|.|++..........          ...
T Consensus        85 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~  164 (419)
T 2eo5_A           85 NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFM  164 (419)
T ss_dssp             CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCC
Confidence            457889999999999863   56667778899875443 332 389999999999765332211111          111


Q ss_pred             cEEEEeCCC---------------------CHHHHH-hhhC-----CCceEEEEeCCCCCCccccc----HHHHHHHHHH
Q 016612          119 VVVKRVNTC---------------------DLDEVA-SAIG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHA  167 (386)
Q Consensus       119 ~~~~~v~~~---------------------d~~~l~-~~~~-----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  167 (386)
                      ..++.++.+                     |+++++ +.++     +++++|++++.+||+|.+.+    +++|.++|++
T Consensus       165 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~  244 (419)
T 2eo5_A          165 PGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKK  244 (419)
T ss_dssp             TTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred             CCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHH
Confidence            244555442                     367888 7775     45677777766778898765    9999999999


Q ss_pred             cCCEEEEeCCCC-CCCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHhhhhcCCCCChhhH
Q 016612          168 HGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (386)
Q Consensus       168 ~~~~li~D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (386)
                      ||+++|+||+|+ .+...     .......|++  |+||.+++  | +|+|+++++++ +. .+ ..........++..+
T Consensus       245 ~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~--G~~riG~~~~~~~-~~-~~-~~~~~~t~~~n~~~~  317 (419)
T 2eo5_A          245 YGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG--GIMPIGATIFRKD-LD-FK-PGMHSNTFGGNALAC  317 (419)
T ss_dssp             HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--TTSCCEEEEEEGG-GC-CC-------CCCCCHHHH
T ss_pred             cCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC--CccceEEEEEchH-hh-cC-CcccCCCCCCCHHHH
Confidence            999999999987 32221     1112345655  68999963  7 89999999755 33 33 211222334566666


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHHHhhc
Q 016612          241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETT  319 (386)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l  319 (386)
                      .++..+++......+...++.+.+.+.|++.          +          ...++.+.++++.+. +..... +.+.+
T Consensus       318 ~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~----------~----------~~~~~~g~~~~i~~~~~~~~~~-~~~~l  376 (419)
T 2eo5_A          318 AIGSKVIDIVKDLLPHVNEIGKIFAEELQGL----------A----------DDVRGIGLAWGLEYNEKKVRDR-IIGES  376 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----------S----------SEEEEETTEEEEECSCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------h----------hheEeeeEEEEEEEecCccHHH-HHHHH
Confidence            6655555433332333334444444444321          0          011345788888883 323355 77777


Q ss_pred             CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          320 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       320 ~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      ...|+.+++++                           ++++||+++    .++++++++.|+++++++
T Consensus       377 ~~~Gv~v~~~~---------------------------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          377 FKRGLLLLPAG---------------------------RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             HHTTEECEEET---------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHCCCEEecCC---------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            77788765432                           345999865    477888888888887653

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.89  E-value=3.5e-21  Score=180.52  Aligned_cols=252  Identities=15%  Similarity=0.092  Sum_probs=176.2

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      +...++++.+++++|.++.+++++|++++.+ +.++ +++||+|+++.|+|+++...    ++..|.+++.++.+     
T Consensus        32 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~  107 (394)
T 1o69_A           32 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAP----ICYLKAKPVFIDCDETYNI  107 (394)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHH----HHHTTCEEEEECBCTTSSB
T ss_pred             hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEEeCCCCCc
Confidence            5688999999999999888899999999974 5556 78999999999999998644    34578899888853     


Q ss_pred             CHHHHHhhhCC---CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC---C-CCccEEEecccc
Q 016612          128 DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---E-LGADIVMHSATK  200 (386)
Q Consensus       128 d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~---~-~~~di~~~S~sK  200 (386)
                      |++++++.+++   ++++|++++   |+|...++++|.++|+++|+++|+|++|+.+......   . .+.|+..+|.+|
T Consensus       108 d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K  184 (394)
T 1o69_A          108 DVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNK  184 (394)
T ss_dssp             CHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred             CHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCc
Confidence            88999998875   799999886   7999999999999999999999999999865432111   1 245677777789


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhhhhcCC--------------CCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--------------GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  266 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  266 (386)
                      .+++ .  ++|+++++++++.+.+.........              .+++..+.+.+..++.+....++..++.+.+.+
T Consensus       185 ~l~~-~--~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~  261 (394)
T 1o69_A          185 IITT-S--GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKE  261 (394)
T ss_dssp             SSCC-S--SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-C--CceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8853 2  5899999766666655544322110              033344444444455566666677777777777


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH---------------------HhHHHHHhhcCcceec
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---------------------ALSKHVVETTKYFSIT  325 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~l~~~gi~  325 (386)
                      .|++.  + .+ .+. ...         ......++++.++..                     .....+.+.|...|+.
T Consensus       262 ~L~~~--~-~~-~~~-~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~  327 (394)
T 1o69_A          262 FLGEY--F-SF-LDE-LEN---------SRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIE  327 (394)
T ss_dssp             HHTTT--E-EC-CCC-CTT---------EECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCC
T ss_pred             Hhccc--c-cc-cCC-CCC---------CcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCc
Confidence            77653  1 11 111 000         001112566776532                     2466788888888998


Q ss_pred             cCCCC
Q 016612          326 VSFGS  330 (386)
Q Consensus       326 ~~~G~  330 (386)
                      ++.|.
T Consensus       328 v~~~~  332 (394)
T 1o69_A          328 TRPLW  332 (394)
T ss_dssp             CBCCC
T ss_pred             ccccC
Confidence            88774

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.89  E-value=4.9e-22  Score=191.79  Aligned_cols=286  Identities=15%  Similarity=0.109  Sum_probs=192.2

Q ss_pred             hHHHHHHHHHhhcCCC-------ceEEeCcHHHHHH-HHHHhcCC--------CC-----EEEecCCCCCcHHHHHhhhc
Q 016612           56 TRDALESLLAKLDKAD-------RALCFTSGMAALA-AVTHLLGT--------GE-----EIVAGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-------~~i~~~~gt~al~-~~~~~~~~--------g~-----~Vlv~~~~~~~~~~~~~~~~  114 (386)
                      +.+++++++++++|.+       ..+++++|++++. +++++..+        |+     +|+++.+.|.++.    ..+
T Consensus        96 le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~----~~~  171 (502)
T 3hbx_A           96 LQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE----KFA  171 (502)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH----HHH
T ss_pred             HHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH----HHH
Confidence            4667888899999987       2345788888875 45555443        76     8999999998875    556


Q ss_pred             ccCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc------CCEEEEeCCCCCCC
Q 016612          115 PKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPV  182 (386)
Q Consensus       115 ~~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------~~~li~D~a~~~~~  182 (386)
                      +..|++++.++.+      |++++++++++++++|++++++||||.+.|+++|.++|+++      |+++++|++|+.+.
T Consensus       172 ~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~  251 (502)
T 3hbx_A          172 RYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFI  251 (502)
T ss_dssp             HHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred             HHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchh
Confidence            6788999888853      89999999999999999999999999999999999999999      99999999997433


Q ss_pred             c---c-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHH-HHHHHhhhhcC----------CCC--ChhhHH
Q 016612          183 L---S-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAEG----------SGL--APFDCW  241 (386)
Q Consensus       183 ~---~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~-~~~~~~~~~~~----------~~~--~~~~~~  241 (386)
                      .   .     +....++|++..|++|++.+|.|  +|+++++++... +.+.......+          +..  .....+
T Consensus       252 ~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g--~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~  329 (502)
T 3hbx_A          252 APFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQY  329 (502)
T ss_dssp             HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHH
T ss_pred             hhhhCcccccccCCCCceEEEECcccccCCCCC--eEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHH
Confidence            1   1     11123789999999999988776  688877765432 21111001100          000  112223


Q ss_pred             HHHh--cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--HhHHHHHh
Q 016612          242 ICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVE  317 (386)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~l~~  317 (386)
                      +.+.  +.+.+..+.++..++++.+.+.|++.+.+. +..+               ....++++|.+.+.  .....+.+
T Consensus       330 ~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~---------------~~~~~~v~f~~~~~~~~~~~~l~~  393 (502)
T 3hbx_A          330 YQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFN-IVSK---------------DEGVPLVAFSLKDSSCHTEFEISD  393 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEE-ECSC---------------SSSSSEEEEEESSCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE-EEeC---------------CCCceEEEEEecCCCcCCHHHHHH
Confidence            3222  223445666777778888888888765321 1110               01357888888542  23456777


Q ss_pred             hcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       318 ~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      .|...|+.++.      +..|...              .+..++||+++    .++++.+++.|+++++.
T Consensus       394 ~L~~~Gi~v~~------~~~p~~~--------------~~~~~lRisv~~~~t~edid~li~~L~~~l~~  443 (502)
T 3hbx_A          394 MLRRYGWIVPA------YTMPPNA--------------QHITVLRVVIREDFSRTLAERLVIDIEKVMRE  443 (502)
T ss_dssp             HHHTTTCBCCE------EECCTTC--------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCcEEee------ccCCccc--------------CCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            77777776532      1112100              12457999997    47778888888777754

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.89  E-value=1.1e-22  Score=192.83  Aligned_cols=283  Identities=14%  Similarity=0.143  Sum_probs=173.9

Q ss_pred             chHHHHHHHHHhhc-C-C-CceEEeCcHHHHHHHH-H---HhcCCCCEEEecCCCCCcHHHHHhhhccc-------CCc-
Q 016612           55 PTRDALESLLAKLD-K-A-DRALCFTSGMAALAAV-T---HLLGTGEEIVAGDDLYGGTDRLLSRVTPK-------TGV-  119 (386)
Q Consensus        55 ~~~~~l~~~l~~~~-g-~-~~~i~~~~gt~al~~~-~---~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-------~g~-  119 (386)
                      +...++++.+++++ | . ++.+++++|++|+.++ .   .+.++| .|++.+|.|++....+......       ++. 
T Consensus        84 ~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~  162 (426)
T 1sff_A           84 EPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLM  162 (426)
T ss_dssp             HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCC
T ss_pred             HHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCC
Confidence            46778999999988 5 3 3566777778998744 3   356676 8999999997754221122111       111 


Q ss_pred             --EEEEeCCC----------CHHHHHhhhC-----CCceEEEEe-CCCCCCccccc----HHHHHHHHHHcCCEEEEeCC
Q 016612          120 --VVKRVNTC----------DLDEVASAIG-----PWTKLVWVE-SPTNPRQQICD----IRKIAEMAHAHGALLLVDNS  177 (386)
Q Consensus       120 --~~~~v~~~----------d~~~l~~~~~-----~~~~~v~~~-~~~nptG~~~~----l~~i~~la~~~~~~li~D~a  177 (386)
                        .++.++.+          |++++++.++     +++++|+++ +++| ||.+.+    +++|.++|++||++||+||+
T Consensus       163 ~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~  241 (426)
T 1sff_A          163 PGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEV  241 (426)
T ss_dssp             CSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             CCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEech
Confidence              14444432          6788888875     467888885 4567 997776    99999999999999999999


Q ss_pred             CCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH
Q 016612          178 IMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA  251 (386)
Q Consensus       178 ~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (386)
                      |+. +...     +......|++  |+||+++ + |+|+|++++++ ++.+.+...........++..+.++..+++.+.
T Consensus       242 ~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~-~-GlriG~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~  316 (426)
T 1sff_A          242 QSGAGRTGTLFAMEQMGVAPDLT--TFAKSIA-G-GFPLAGVTGRA-EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  316 (426)
T ss_dssp             TTTTTTTSSSSGGGGTTSCCSEE--EECGGGG-T-SSCCEEEEEEH-HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             hhccCcccchhhhhhcCCCCCEE--EEccccc-C-CCceEEEEEcH-HHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH
Confidence            982 1111     1112235655  7899995 4 79999999974 454433221122223455666655554443322


Q ss_pred             H--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--------CHHhHHHHHhhcCc
Q 016612          252 L--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKY  321 (386)
Q Consensus       252 ~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~  321 (386)
                      .  ..++..++.+.+.+.+++..       ..+   +...    ..++.+.++++.+.        +......+.+.+..
T Consensus       317 ~~~~~~~~~~~~~~l~~~l~~~~-------~~~---~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  382 (426)
T 1sff_A          317 QENLLQKANDLGQKLKDGLLAIA-------EKH---PEIG----DVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD  382 (426)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHH-------HTC---TTEE----EEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHH-------HhC---CCeE----EEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHH
Confidence            1  22333444444444444311       001   1000    11224788888883        23346677777777


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      .|+.+.+|..                         .++++|++++    .++++++++.|++++++
T Consensus       383 ~gi~v~~~~~-------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  423 (426)
T 1sff_A          383 KGLILLSCGP-------------------------YYNVLRILVPLTIEDAQIRQGLEIISQCFDE  423 (426)
T ss_dssp             TTEECEEEST-------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEecCCC-------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            7887766543                         1456999985    37788888888887764

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.89  E-value=7.2e-23  Score=189.80  Aligned_cols=273  Identities=14%  Similarity=0.059  Sum_probs=171.0

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeC-cHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           56 TRDALESLLAKLDKAD---RALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~-~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +++++++.+++++|.+   +.++++ +|+++++ ++.++++|||+|+++++.|.+..  +...++..| +++.++.+   
T Consensus        50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~  126 (362)
T 2c0r_A           50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEAS  126 (362)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGG
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEeccccc
Confidence            6889999999999987   335564 5569987 55668899999998876654431  123445567 66666532   


Q ss_pred             ------CHHHHHhhhCCCceEEEEeCCCCCCccc-ccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEecccc
Q 016612          128 ------DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK  200 (386)
Q Consensus       128 ------d~~~l~~~~~~~~~~v~~~~~~nptG~~-~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK  200 (386)
                            |.++++  ++++|++|++++++||||.+ .|+++|      +|+++++|++|+.+....... ..|++++|+||
T Consensus       127 ~~~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~-~~d~~~~s~~K  197 (362)
T 2c0r_A          127 NYMTLPKLQEIQ--LQDNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQK  197 (362)
T ss_dssp             TTCSCCCGGGCC--CCTTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGG-GCSEEEEETTT
T ss_pred             ccccCCCHHHcc--cCCCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchh-HCcEEEEeccc
Confidence                  333332  67889999999999999996 677776      899999999998776532222 24899999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHh------------hhhcCCCCChhhHHHHHhcCCc------HHHHHHHHHHHHH
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFL------------QNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQ  262 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  262 (386)
                      ++ |+.|  +|+++++++.+ +.+...            ........+....+.+..+++.      +..+.++..++.+
T Consensus       198 ~~-g~~G--~G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  273 (362)
T 2c0r_A          198 NL-GPSG--VTVVIVREDLV-AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKAS  273 (362)
T ss_dssp             TT-CCSS--CEEEEEEGGGS-SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cc-cCcC--cEEEEEcHHHH-hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99 5777  79999875432 222110            0011123344444444444332      3344455555566


Q ss_pred             HHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccccccc
Q 016612          263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS  342 (386)
Q Consensus       263 ~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~  342 (386)
                      .+.+.|++.+.        +     ..+........++++++.+++......+.+.+...|+.+.+|..+          
T Consensus       274 ~l~~~L~~~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~----------  330 (362)
T 2c0r_A          274 LIYDAIDQSGG--------F-----YRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRS----------  330 (362)
T ss_dssp             HHHHHHHTSTT--------S-----SEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT----------
T ss_pred             HHHHHHHHcCC--------c-----cccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCC----------
Confidence            66666665421        1     001000001124677888865545677888887778876554321          


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          343 HASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                                     .+++|+|++.    ++++++++.|++.++
T Consensus       331 ---------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~  359 (362)
T 2c0r_A          331 ---------------VGGLRASIYNAVPYESCEALVQFMEHFKR  359 (362)
T ss_dssp             ---------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                           2359999974    566666666666554

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.89  E-value=2.5e-22  Score=188.36  Aligned_cols=165  Identities=16%  Similarity=0.181  Sum_probs=119.6

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhc-CCCceEE--eCcHHHHHHHHHH-h--cCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLD-KADRALC--FTSGMAALAAVTH-L--LGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~-g~~~~i~--~~~gt~al~~~~~-~--~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      .+.|... |.+ +++++.+++.... ..++.++  +++|++|+.++.. +  +.+||+|++++|+|+++.    ..++..
T Consensus        62 ~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~  137 (394)
T 2ay1_A           62 TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHV----SIMNFM  137 (394)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHH----HHHHHH
T ss_pred             cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHH----HHHHHc
Confidence            4457654 554 5666666653221 2235555  6777799875543 3  349999999999999886    344566


Q ss_pred             CcEEEEeCC---C----CHHHHHhhhCC---CceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc
Q 016612          118 GVVVKRVNT---C----DLDEVASAIGP---WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS  184 (386)
Q Consensus       118 g~~~~~v~~---~----d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~  184 (386)
                      |.+++.++.   +    |++++++.+++   +++++++++|+||||.+.+   +++|.++|+++|+++|+||+|+.....
T Consensus       138 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~  217 (394)
T 2ay1_A          138 GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG  217 (394)
T ss_dssp             TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSC
T ss_pred             CCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccC
Confidence            788888776   2    78999988864   3677888999999999986   668999999999999999999754321


Q ss_pred             ------CC--C-C-CCccEEEeccccccccCCCceEEEEEE
Q 016612          185 ------RP--L-E-LGADIVMHSATKFIAGHSDVMAGVLAV  215 (386)
Q Consensus       185 ------~~--~-~-~~~di~~~S~sK~~~g~~g~~~G~i~~  215 (386)
                            ..  . . ...+++++|+||++ |++|+|+|++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~  257 (394)
T 2ay1_A          218 LEEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLLA  257 (394)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEEE
T ss_pred             cccchHHHHHHhhcCCCEEEEEeccCCC-cCcCCccceEEE
Confidence                  01  1 1 13468899999999 556899999998

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.89  E-value=2.3e-22  Score=189.20  Aligned_cols=285  Identities=18%  Similarity=0.145  Sum_probs=180.2

Q ss_pred             HHHHHHHhhcCCCce-EEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCc--EEEEeCC------CC
Q 016612           59 ALESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNT------CD  128 (386)
Q Consensus        59 ~l~~~l~~~~g~~~~-i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~--~~~~v~~------~d  128 (386)
                      ++++++++++|.+.. +++++|++++. ++.+++++||+|++++|.|+++...+ ......|.  +++.++.      .|
T Consensus        73 ~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d  151 (405)
T 2vi8_A           73 LARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-SPVNFSGVQYNFVAYGVDPETHVID  151 (405)
T ss_dssp             HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTT-CTTSHHHHHSEEEEECBCTTTCSBC
T ss_pred             HHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhccc-chhhhccceeEEEecccccccCCcC
Confidence            355799999998854 45688999987 55667899999999999998774210 00112232  6666653      28


Q ss_pred             HHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC-CCC---CCccEEEeccccccc
Q 016612          129 LDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLE---LGADIVMHSATKFIA  203 (386)
Q Consensus       129 ~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~---~~~di~~~S~sK~~~  203 (386)
                      ++++++.+++ ++++|+++ ++|. |...++++|.++|+++|+++|+|++|+.+.... ...   .+.|++++|+||+++
T Consensus       152 ~~~l~~~i~~~~~~~v~~~-~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~  229 (405)
T 2vi8_A          152 YDDVREKARLHRPKLIVAA-AAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLR  229 (405)
T ss_dssp             HHHHHHHHHHHCCSEEEEC-CSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTC
T ss_pred             HHHHHHHHHhcCCeEEEEe-CCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCC
Confidence            9999999875 88888874 4443 566789999999999999999999998443211 111   157899999999997


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhhhhcCC-CCChhhHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHhhCCCcceE
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  277 (386)
                      |+.|   |+++++ +++.+.+......... +.+..+...+..+++     .+....++..++.+.+.+.|++..     
T Consensus       230 g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-----  300 (405)
T 2vi8_A          230 GPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEG-----  300 (405)
T ss_dssp             CCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred             CCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-----
Confidence            6664   999987 5566555544322222 223333333222222     223344455555666666665431     


Q ss_pred             ecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCC
Q 016612          278 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  356 (386)
Q Consensus       278 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~  356 (386)
                                +.+..  +.+.+.++++.++.. .....+.+.+...|+.+++|.... ...+                ..
T Consensus       301 ----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~-~~~~----------------~~  351 (405)
T 2vi8_A          301 ----------FTLVS--GGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPY-DPES----------------PF  351 (405)
T ss_dssp             ----------CEEGG--GSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTT-CSSC----------------TT
T ss_pred             ----------CeEec--CCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCcc-ccCC----------------CC
Confidence                      11111  122467788887531 135566677777788777654210 0000                01


Q ss_pred             CCCeEEEEec--------cCChHHHHHHHHHHHhcC
Q 016612          357 TEDLVRISVG--------IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       357 ~~~~iRis~~--------~~~~~~~i~~l~~~l~~~  384 (386)
                      .++++|+|++        .++++++++.|++++++.
T Consensus       352 ~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          352 VTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             TCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             CCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence            2467999997        478888888888888654

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.89  E-value=2.5e-21  Score=183.24  Aligned_cols=288  Identities=16%  Similarity=0.140  Sum_probs=172.5

Q ss_pred             hHHH-HHHHHHhhcCCCce-EEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHH-HhhhcccCCcEEEEeCCC----
Q 016612           56 TRDA-LESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL-LSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        56 ~~~~-l~~~l~~~~g~~~~-i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~-~~~~~~~~g~~~~~v~~~----  127 (386)
                      .+++ .++.+++++|.+.. +++++|++++. ++.+++++||+|++++|.|++.... ........+.+.+.++.+    
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  157 (425)
T 3ecd_A           78 EVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTM  157 (425)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTS
T ss_pred             HHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccC
Confidence            4444 45888899999865 45889998886 5566889999999999999873211 111112223355555543    


Q ss_pred             --CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCCCccEEEeccc
Q 016612          128 --DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSAT  199 (386)
Q Consensus       128 --d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~di~~~S~s  199 (386)
                        |++++++.++ +++++|++++|+||  ...++++|.++|+++|++||+|++|+.+...     .... ..|++++|+|
T Consensus       158 ~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~s  234 (425)
T 3ecd_A          158 LIDYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTH  234 (425)
T ss_dssp             SCCHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESS
T ss_pred             ccCHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCC
Confidence              8999999986 68999999999884  6778999999999999999999997544321     1122 3789999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHhhhhcCC-CCChhhHHHHH----hcC-CcHHHHHHHHHHHHHHHHHHHhhCCC
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICL----RGV-KTMALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      |+++|+   |+|+++++++.+.+.+......... ........++.    ... ..+....++..++.+.+.+.|.+.. 
T Consensus       235 K~l~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-  310 (425)
T 3ecd_A          235 KTLRGP---RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG-  310 (425)
T ss_dssp             GGGCCC---SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             cccCCC---CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            999553   5799999876676655543332211 22221111111    112 2233445555666666666666531 


Q ss_pred             cceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHH
Q 016612          274 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  352 (386)
Q Consensus       274 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~  352 (386)
                              +      .+..  +...+.++++.+.. ......+.+.+...|+.++.+..      |....          
T Consensus       311 --------~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~------p~~~~----------  358 (425)
T 3ecd_A          311 --------V------DLVT--GGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGI------PFDPE----------  358 (425)
T ss_dssp             --------C------EEGG--GSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCC------TTCSS----------
T ss_pred             --------C------eecc--CCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEeccccc------CCCCC----------
Confidence                    1      1111  12346778887743 22345566666666777663321      10000          


Q ss_pred             hcCCCCCeEEEEec--------cCChHHHHHHHHHHHhc
Q 016612          353 ARGLTEDLVRISVG--------IEDVNDLISDLDKALRT  383 (386)
Q Consensus       353 ~~~~~~~~iRis~~--------~~~~~~~i~~l~~~l~~  383 (386)
                       .....+.+|++++        .++++++++.|++++++
T Consensus       359 -~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~  396 (425)
T 3ecd_A          359 -KPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEA  396 (425)
T ss_dssp             -CTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhc
Confidence             0112467999953        36777777777777754

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.88  E-value=1.3e-21  Score=189.18  Aligned_cols=222  Identities=11%  Similarity=0.060  Sum_probs=155.7

Q ss_pred             CCccccCC-CC-chHHHHHHHHHhhcCCC----ceEEeCcHHHHHH-HHHHhcC--------------CCCEEEecCCCC
Q 016612           45 GPYDYTRS-GN-PTRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG--------------TGEEIVAGDDLY  103 (386)
Q Consensus        45 ~~~~y~~~-g~-~~~~~l~~~l~~~~g~~----~~i~~~~gt~al~-~~~~~~~--------------~g~~Vlv~~~~~  103 (386)
                      ..+.|... +. .+.+++.+++++++|.+    ..+++++||+|+. ++.+..+              +++.|+++++.|
T Consensus       123 ~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H  202 (511)
T 3vp6_A          123 NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH  202 (511)
T ss_dssp             CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred             CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence            34455544 32 25677888899999876    4677888888764 4444332              567899999999


Q ss_pred             CcHHHHHhhhcccCCc---EEEEeCCC-----CHHHHHhhhCCC------ceEEEEeCCCCCCcccccHHHHHHHHHHcC
Q 016612          104 GGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIRKIAEMAHAHG  169 (386)
Q Consensus       104 ~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~~~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~  169 (386)
                      .++..    .++..|+   +++.++.+     |+++|+++++++      +++|++++++|++|.+.|+++|+++|++||
T Consensus       203 ~s~~~----~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~  278 (511)
T 3vp6_A          203 YSIKK----AGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN  278 (511)
T ss_dssp             THHHH----HHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred             HHHHH----HHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcC
Confidence            98864    4445555   77777764     899999998754      889999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCccCCC-------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh--hh----------
Q 016612          170 ALLLVDNSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NA----------  230 (386)
Q Consensus       170 ~~li~D~a~~~~~~~~~~-------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~--~~----------  230 (386)
                      +++++|++|+.+....+.       ..++|++++++||++++|.|  +|+++++++.+.+......  +.          
T Consensus       279 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~  356 (511)
T 3vp6_A          279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGILQGCNQMHASYLFQQDKHYDVS  356 (511)
T ss_dssp             CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGG
T ss_pred             CEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC--eEEEEEeCHHHHHHHhccCCccccCcccccccc
Confidence            999999999877653221       12569999999999988776  6888888765544321100  00          


Q ss_pred             ---------cCCCCChhhHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHhhCC
Q 016612          231 ---------EGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       231 ---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                               .+........++.+.  +.+.+..+.++..++++.+.+.+++.+
T Consensus       357 ~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~p  409 (511)
T 3vp6_A          357 YDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNRE  409 (511)
T ss_dssp             GCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             cCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                     001112233333333  233455667777788888888887664

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.88  E-value=9.6e-23  Score=193.44  Aligned_cols=329  Identities=12%  Similarity=0.071  Sum_probs=187.7

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC-C-CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHH
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDKA--DRALCFTSGMAALAA   85 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~   85 (386)
                      +.+++..+  ..++|..+|.+.++......    ... .|... + .+.+.+++++++++++.  ++.++++||++++..
T Consensus        30 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~----~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~  104 (430)
T 3i4j_A           30 RYLDGSSGALVANIGHGRAEVGERMAAQAA----RLP-FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATES  104 (430)
T ss_dssp             EEEETTHHHHTCTTCBCCHHHHHHHHHHHH----HCC-CCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHH
T ss_pred             EEEECCCchhccccCCCCHHHHHHHHHHHH----hcc-cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHH
Confidence            35566533  46678766665543221111    111 23322 2 34789999999999865  467778888999874


Q ss_pred             -HHHhc--------CCCCEEEecCCCCCcHHHHHhhhcccCC---------c--EEEEeCCC--------CHHHHHhhhC
Q 016612           86 -VTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTPKTG---------V--VVKRVNTC--------DLDEVASAIG  137 (386)
Q Consensus        86 -~~~~~--------~~g~~Vlv~~~~~~~~~~~~~~~~~~~g---------~--~~~~v~~~--------d~~~l~~~~~  137 (386)
                       +..++        .+|+.|++.+|.|+++............         .  .+..++..        |+++|++.++
T Consensus       105 al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~  184 (430)
T 3i4j_A          105 AVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLE  184 (430)
T ss_dssp             HHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHH
Confidence             43343        4578999999999876432111111000         0  22333433        3478888876


Q ss_pred             ----CCceEEEEeCCCC-CCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCC-CCCccEEEeccccc
Q 016612          138 ----PWTKLVWVESPTN-PRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPL-ELGADIVMHSATKF  201 (386)
Q Consensus       138 ----~~~~~v~~~~~~n-ptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~-~~~~di~~~S~sK~  201 (386)
                          +++++|+++.++| ++|.+.+    +++|.++|++||+++|+||+|+. +...     ... ....|++  ++||.
T Consensus       185 ~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK~  262 (430)
T 3i4j_A          185 REGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGKG  262 (430)
T ss_dssp             HHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECGG
T ss_pred             hcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEE--EEccc
Confidence                5667788888888 8998776    99999999999999999999862 2211     111 2235665  57899


Q ss_pred             cccCCC-ceEEEEEEcChhHHHHHHHh----hhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCc
Q 016612          202 IAGHSD-VMAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRV  274 (386)
Q Consensus       202 ~~g~~g-~~~G~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~  274 (386)
                      +++  | +|+|+++++ +++.+.+...    ........++..+.++..+++.+.  ...++..++.+.+.+.+++..  
T Consensus       263 l~~--G~~r~G~~~~~-~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~--  337 (430)
T 3i4j_A          263 LAA--GYAPLAGLLAA-PQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQ--  337 (430)
T ss_dssp             GTT--TSSCCEEEEEC-HHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccC--CccccEEEEEC-HHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH--
Confidence            964  7 899999986 5566655542    222334556666666555544221  123344444455555554321  


Q ss_pred             ceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH---------HhHHHHHhhcCcceeccCCCCccccccccccccCCC
Q 016612          275 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  345 (386)
Q Consensus       275 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~  345 (386)
                              ..++..    ...++.+.++++.+.+.         ....++.+.+...|+.+.++....            
T Consensus       338 --------~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~------------  393 (430)
T 3i4j_A          338 --------ARFPQM----MQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAE------------  393 (430)
T ss_dssp             --------HHCTTE----EEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC------------------
T ss_pred             --------HhCCCe----EEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEeccccc------------
Confidence                    000111    11134567888887431         123567777777888777653200            


Q ss_pred             CCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          346 IPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       346 ~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                              .+..++++||+++    .++++++++.|++++++.
T Consensus       394 --------~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          394 --------PNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             -------------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                    0223567999965    488888999999888753

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.88  E-value=1e-21  Score=187.47  Aligned_cols=210  Identities=13%  Similarity=0.126  Sum_probs=142.7

Q ss_pred             hHHHHHHHHHhhcCCCc-eEEeCcHH-HHHH-HHHHhcC--CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC----
Q 016612           56 TRDALESLLAKLDKADR-ALCFTSGM-AALA-AVTHLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~-~i~~~~gt-~al~-~~~~~~~--~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----  126 (386)
                      +.+++++++++++|.+. .+++++|| .++. ++.++..  +|+.|+++++.|+++.    ..++..|++++.++.    
T Consensus       134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~----~~~~~~G~~~~~v~~~~~~  209 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI----KAVSFVGMNMRLVETVLDG  209 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEET
T ss_pred             HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH----HHHHHcCCCceEEEEeccC
Confidence            56779999999999874 56666777 4544 4444333  7788999999998875    445568999888775    


Q ss_pred             ----CCHHHHHhhh-C----CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCc---cC-C--CCCCc
Q 016612          127 ----CDLDEVASAI-G----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL---SR-P--LELGA  191 (386)
Q Consensus       127 ----~d~~~l~~~~-~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~---~~-~--~~~~~  191 (386)
                          .|++++++++ +    .++.+|++++++||+|.+.|+++|.++|+++|+++++|++|+....   +. .  ...++
T Consensus       210 ~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~  289 (456)
T 2z67_A          210 DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV  289 (456)
T ss_dssp             TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred             CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCC
Confidence                2899999998 4    4777888899999999999999999999999999999999874432   11 1  11178


Q ss_pred             cEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHh
Q 016612          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLA  269 (386)
Q Consensus       192 di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~  269 (386)
                      |++++|+||++.+|.|  +|+++++++++.+.+................++.+..+  ..+....++..++++.+.+.|+
T Consensus       290 D~~~~s~hK~~~~p~g--~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~  367 (456)
T 2z67_A          290 DAVVSSSDKNLLTPIG--GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN  367 (456)
T ss_dssp             SEEEEEHHHHHCCCSS--CEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCcCCCCC--eEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999877655  79999976666554432221111111122222222211  2233344555566666666665


Q ss_pred             hC
Q 016612          270 SH  271 (386)
Q Consensus       270 ~~  271 (386)
                      +.
T Consensus       368 ~~  369 (456)
T 2z67_A          368 DL  369 (456)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.88  E-value=3.2e-22  Score=191.10  Aligned_cols=326  Identities=16%  Similarity=0.151  Sum_probs=196.3

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCC-ceEEeCcHHHHHHHH-
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSGMAALAAV-   86 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~gt~al~~~-   86 (386)
                      +.+++..+  ..++|..+|.+.++......    ...+ +... ..+.+.+++++++++++.+ ++++++||++|+..+ 
T Consensus        50 ~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~----~~~~-~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al  124 (452)
T 3n5m_A           50 RYLDGMSGLWCVNSGYGRKELAEAAYKQLQ----TLSY-FPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAF  124 (452)
T ss_dssp             EEEETTHHHHTCTTCBCCHHHHHHHHHHHT----TCCC-CCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHH
T ss_pred             EEEECCcchhhccCCCCCHHHHHHHHHHHH----hcCC-cccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHH
Confidence            35666522  36788776666554222111    1111 1112 2357899999999998765 577778889998744 


Q ss_pred             HHhc-----C---CCCEEEecCCCCCcHHHHHhhhc---------ccCCcEEEEeCC--------CC---------HHHH
Q 016612           87 THLL-----G---TGEEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNT--------CD---------LDEV  132 (386)
Q Consensus        87 ~~~~-----~---~g~~Vlv~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~--------~d---------~~~l  132 (386)
                      ..++     +   ++++|++.++.|+++........         ......+..++.        .|         +++|
T Consensus       125 ~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (452)
T 3n5m_A          125 KIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEV  204 (452)
T ss_dssp             HHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHH
Confidence            3343     4   78999999999987642221111         011112333332        23         8899


Q ss_pred             HhhhC----CCceEEEEeCC-CCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEec
Q 016612          133 ASAIG----PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHS  197 (386)
Q Consensus       133 ~~~~~----~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S  197 (386)
                      ++.++    +++++|+++++ +| +|.+.+    +++|.++|++||+++|+||+|+. +...     .......|++  +
T Consensus       205 e~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t  281 (452)
T 3n5m_A          205 DRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDII--T  281 (452)
T ss_dssp             HHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--E
T ss_pred             HHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEE--e
Confidence            98886    67889999998 89 998876    99999999999999999999862 2211     1112345666  5


Q ss_pred             cccccccCCC-ceEEEEEEcChhHHHHHHH---hh---hhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHH
Q 016612          198 ATKFIAGHSD-VMAGVLAVKGERLAKELYF---LQ---NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL  268 (386)
Q Consensus       198 ~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l  268 (386)
                      +||.+++  | +++|+++++ +++.+.+..   ..   .....+.++..++++...++.+..  ..++..++.+.+.+.+
T Consensus       282 ~sK~l~~--G~~~ig~~~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L  358 (452)
T 3n5m_A          282 MAKGITS--AYLPLSATAVK-REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQL  358 (452)
T ss_dssp             ECGGGGT--TSSCCEEEEEE-HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ecccccC--CCcceEEEEEC-HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            7899954  6 889999986 555554321   11   122334566666665555543211  2334444455555555


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC---------HHhHHHHHhhcCcceeccCCCCccccccccc
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---------LALSKHVVETTKYFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~  339 (386)
                      ++..          ..++..    ...++.+.++++.+..         .....++.+.+...|+.+.++..+.      
T Consensus       359 ~~~~----------~~~~~~----~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~------  418 (452)
T 3n5m_A          359 KEEI----------GEHPLV----GDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT------  418 (452)
T ss_dssp             HHHH----------TTCTTE----EEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS------
T ss_pred             HHHH----------hcCCCe----EEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc------
Confidence            4320          111111    1113456777777621         2234567777777788776654311      


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                     +..++++||+++    .++++++++.|++++++
T Consensus       419 ---------------~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          419 ---------------AGYNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             ---------------TTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             ---------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                           012577999865    37888888888888765

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.88  E-value=1.4e-21  Score=184.58  Aligned_cols=289  Identities=20%  Similarity=0.149  Sum_probs=173.5

Q ss_pred             hHHHHHHHHHhhcCCCc-eEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhh-hcccCCcEEEEeCC-----C
Q 016612           56 TRDALESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNT-----C  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~-~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~-~~~~~g~~~~~v~~-----~  127 (386)
                      ..+.+++++++++|.+. .+++++|++++. ++.+++++||+|++++|.|+++...... .....+...+.++.     .
T Consensus        77 ~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (420)
T 3gbx_A           77 VEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKI  156 (420)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSC
T ss_pred             HHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCc
Confidence            34556688999999884 466899998886 5567899999999999999874311111 11112223333321     4


Q ss_pred             CHHHHHhhhCC-CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCc-----cCCCCCCccEEEeccccc
Q 016612          128 DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKF  201 (386)
Q Consensus       128 d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~-----~~~~~~~~di~~~S~sK~  201 (386)
                      |++++++++++ ++++|++++|+||  ...++++|.++|++||+++|+||+|+.+..     ..... ..|++++|+||+
T Consensus       157 d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~  233 (420)
T 3gbx_A          157 DYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKT  233 (420)
T ss_dssp             CHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGG
T ss_pred             CHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccC
Confidence            89999999875 6999999999886  478999999999999999999999864432     22222 489999999999


Q ss_pred             cccCCCceEEEEEEcC--hhHHHHHHHhhhhcCC-CCChhhHHH---HH-hcC-CcHHHHHHHHHHHHHHHHHHHhhCCC
Q 016612          202 IAGHSDVMAGVLAVKG--ERLAKELYFLQNAEGS-GLAPFDCWI---CL-RGV-KTMALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~---~~-~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      ++|+.   +|++++++  +.+.+.+......... ........+   .. ... ..+....++..++.+.+.+.|++.. 
T Consensus       234 ~~g~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-  309 (420)
T 3gbx_A          234 LAGPR---GGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRG-  309 (420)
T ss_dssp             GCSCS---CEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCCCC---ceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            97654   69999886  3565555443332211 111211111   11 222 2234455666677777777776531 


Q ss_pred             cceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHH
Q 016612          274 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  352 (386)
Q Consensus       274 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~  352 (386)
                              +      .+..  +...++++++.+.. ......+.+.+...|+.+.++..      |.....         
T Consensus       310 --------~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~------~~~~~~---------  358 (420)
T 3gbx_A          310 --------Y------KVVS--GGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSV------PNDPKS---------  358 (420)
T ss_dssp             --------C------EEGG--GSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECC------TTCSSC---------
T ss_pred             --------C------eecc--CCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccC------CCCccc---------
Confidence                    1      1111  11246677877643 22345555666666776554211      100000         


Q ss_pred             hcCCCCCeEEEEec--------cCChHHHHHHHHHHHhcC
Q 016612          353 ARGLTEDLVRISVG--------IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       353 ~~~~~~~~iRis~~--------~~~~~~~i~~l~~~l~~~  384 (386)
                        ...+..+|++++        .++++++++.|++++++.
T Consensus       359 --~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          359 --PFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI  396 (420)
T ss_dssp             --TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             --cCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence              012345999985        266777777777777653

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.88  E-value=9.7e-23  Score=188.69  Aligned_cols=273  Identities=12%  Similarity=0.070  Sum_probs=172.4

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeCcH-HHHHHH-HHHhcCC---CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKAD---RALCFTSG-MAALAA-VTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~g-t~al~~-~~~~~~~---g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      ..+++++++++++|.+   +.++++++ ++|+.+ +..++.+   ||.|+++.+.|...     ..++..| +++.++.+
T Consensus        49 ~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-----~~~~~~g-~~~~v~~~  122 (360)
T 1w23_A           49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-----KEAKLLG-ETHIAAST  122 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-----HHHHTTS-EEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-----HHHHHhC-CeEEeecc
Confidence            6889999999999986   34455555 788874 5566654   66677776666442     2345678 88887742


Q ss_pred             ------CHHHHHh-hhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEecccc
Q 016612          128 ------DLDEVAS-AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK  200 (386)
Q Consensus       128 ------d~~~l~~-~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK  200 (386)
                            |++++++ ++++++++|++++|+||||.+.+  +|   ++++|+++|+|++|+.+....... ..|++++|+||
T Consensus       123 ~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~--~i---~~~~~~~li~D~a~~~~~~~~~~~-~~di~~~s~sK  196 (360)
T 1w23_A          123 KANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ--NF---PEINHAPLIADMSSDILSRPLKVN-QFGMIYAGAQK  196 (360)
T ss_dssp             GGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS--SC---CCCCSSCEEEECTTTTTSSCCCGG-GCSEEEEETTT
T ss_pred             cccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc--cc---cccCCceEEEechhhcCCCCcCcc-cCCEEEEEccc
Confidence                  6788888 88889999999999999999987  33   338999999999998765432221 23899999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhh-----------hhcC-CCCChhhHHHHHhcCCc------HHHHHHHHHHHHH
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQ-----------NAEG-SGLAPFDCWICLRGVKT------MALRVEKQQDNAQ  262 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  262 (386)
                      +++ ++|  +|+++++++ +.+.+....           .... ...+....+++..+++.      +....++..++.+
T Consensus       197 ~~~-~~G--~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  272 (360)
T 1w23_A          197 NLG-PSG--VTVVIVKKD-LLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAK  272 (360)
T ss_dssp             TTS-CTT--CEEEEEEHH-HHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccC-CCC--cEEEEEcHH-HHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            994 666  699988754 333221111           0011 12233333333333322      2334455556666


Q ss_pred             HHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC-CceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccc
Q 016612          263 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       263 ~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      .+.+.+++.+.        +     ..... .+... +.++++.+++.....++.+.+...|+.+.+|..          
T Consensus       273 ~l~~~L~~~~~--------~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~----------  328 (360)
T 1w23_A          273 IIYDTIDESNG--------F-----YVGHA-EKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHR----------  328 (360)
T ss_dssp             HHHHHHHTTTT--------S-----SEESS-CGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCT----------
T ss_pred             HHHHHHHHccC--------c-----ccccC-CchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCC----------
Confidence            66666665431        1     00000 01112 348888887655567788888778887665442          


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          342 SHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                                     .++++|+|++.    ++++++++.|++.+++
T Consensus       329 ---------------~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          329 ---------------SVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             ---------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence                           13569999974    5566666666666554

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.88  E-value=3e-22  Score=188.07  Aligned_cols=280  Identities=11%  Similarity=0.028  Sum_probs=168.3

Q ss_pred             hHHHHHHHHHhhcCCC---ceEE-eCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC--CcEEEEeCCCC
Q 016612           56 TRDALESLLAKLDKAD---RALC-FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNTCD  128 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~-~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~--g~~~~~v~~~d  128 (386)
                      ..+++++++++++|.+   +.++ +++|++++.+ +.+++++| .+++..+.|....   ...+...  |.+++.++.++
T Consensus        79 ~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~---~~~~~~~~~g~~~~~v~~~~  154 (398)
T 2fyf_A           79 LVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKF---ASAVSKNPFVGEPIIITSDP  154 (398)
T ss_dssp             HHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHH---HHHHHHCTTSCCCEEEECCT
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHH---HHHHHHhCCCCceEEEecCC
Confidence            5788999999999986   3444 5677799874 55577887 2333434442211   1122223  66666666531


Q ss_pred             HHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCc
Q 016612          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV  208 (386)
Q Consensus       129 ~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~  208 (386)
                      -......+++++++|++++++||||.+.|+++|.++   +|+++|+|++|+.+....... +.|++++|+||++++++| 
T Consensus       155 g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~gg-  229 (398)
T 2fyf_A          155 GSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDGG-  229 (398)
T ss_dssp             TCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCSS-
T ss_pred             CCCCCccccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCCc-
Confidence            000111256789999999999999999999888887   899999999998766432222 479999999999966533 


Q ss_pred             eEEEEEEcChhHHHHHHHhh----------------h----hcC-CCCChhhHHHHHhcCCc------HHHHHHHHHHHH
Q 016612          209 MAGVLAVKGERLAKELYFLQ----------------N----AEG-SGLAPFDCWICLRGVKT------MALRVEKQQDNA  261 (386)
Q Consensus       209 ~~G~i~~~~~~~~~~~~~~~----------------~----~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  261 (386)
                       +|+++++++ +.+.+....                .    ... ...+......+..+++.      +....++..++.
T Consensus       230 -~g~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  307 (398)
T 2fyf_A          230 -LWLAIMSPA-ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS  307 (398)
T ss_dssp             -EEEEEECHH-HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             -eEEEEECHH-HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence             799888754 444332110                0    011 12222323333333322      333445555666


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      +.+.+.|++.+.              ..++...+..+++ ++++.++......++.+.+...|+.++.|..         
T Consensus       308 ~~l~~~L~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~---------  364 (398)
T 2fyf_A          308 QRLYSWAQERPY--------------TTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYR---------  364 (398)
T ss_dssp             HHHHHHHHHSTT--------------EEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCT---------
T ss_pred             HHHHHHHHHcCC--------------ceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcc---------
Confidence            666666665431              1111100111244 8888885433456777777777887765421         


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                                    ..+++++|||++.    ++++++++.|++++++
T Consensus       365 --------------~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          365 --------------KLGRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             --------------TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             --------------cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence                          1125679999973    6777777777777764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.88  E-value=3e-22  Score=192.22  Aligned_cols=158  Identities=20%  Similarity=0.289  Sum_probs=128.6

Q ss_pred             hHHHHHHHHHhhcCCCceEEe-CcHHHHHHH-HHHh----cCCCC-----EEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           56 TRDALESLLAKLDKADRALCF-TSGMAALAA-VTHL----LGTGE-----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~-~~gt~al~~-~~~~----~~~g~-----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      +++++++++++++|.+..+++ ++|++++.+ ++.+    .++||     +|+++++.|+++.    ..++..|.+++.+
T Consensus       108 l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~----~~~~~~G~~vv~v  183 (474)
T 1wyu_B          108 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNP----ATASMAGYQVREI  183 (474)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHH----HHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhH----HHHHHCCCEEEEe
Confidence            688999999999999865544 667788753 3332    46887     9999999998886    4456789999999


Q ss_pred             CCC-----CHHHHHhhhCCCceEEEEeCCCCCCccc-ccHHHHHHHHHHcCCEEEEeCCCCCCCc--cCCCCCCccEEEe
Q 016612          125 NTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMH  196 (386)
Q Consensus       125 ~~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~-~~l~~i~~la~~~~~~li~D~a~~~~~~--~~~~~~~~di~~~  196 (386)
                      +.+     |+++|++++++++++|++++| ||+|.+ .++++|.++|+++|+++|+|++|+.+..  .++...+.|++++
T Consensus       184 ~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~  262 (474)
T 1wyu_B          184 PSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHL  262 (474)
T ss_dssp             CBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEEC
T ss_pred             cCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEE
Confidence            875     899999999999999999998 689998 6999999999999999999999975543  1233457899999


Q ss_pred             ccccccccCC---CceEEEEEEcCh
Q 016612          197 SATKFIAGHS---DVMAGVLAVKGE  218 (386)
Q Consensus       197 S~sK~~~g~~---g~~~G~i~~~~~  218 (386)
                      |+||++++|.   |+++|+++++++
T Consensus       263 s~~K~~~~p~g~gG~~~G~~~~~~~  287 (474)
T 1wyu_B          263 NLHKTFTVPHGGGGPGSGPVGVKAH  287 (474)
T ss_dssp             CTTTTTCCCCTTSCCCCCCEEECGG
T ss_pred             eCccccccCCCCCCCCeEEEEEcHH
Confidence            9999997663   357899999865

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.88  E-value=5.8e-22  Score=187.99  Aligned_cols=282  Identities=12%  Similarity=0.069  Sum_probs=174.2

Q ss_pred             CchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHHH-h---cC----CCCEEEecCCCCCcHHHHHhhhcc--------
Q 016612           54 NPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-L---LG----TGEEIVAGDDLYGGTDRLLSRVTP--------  115 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~~-~---~~----~g~~Vlv~~~~~~~~~~~~~~~~~--------  115 (386)
                      .+...++++.++++++  .++.+++++|++|+..++. +   .+    |||+|++.+|.|+++.........        
T Consensus        85 ~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~  164 (429)
T 1s0a_A           85 HAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSL  164 (429)
T ss_dssp             CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGG
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhccc
Confidence            3467889999999995  4467777888899874433 2   22    689999999998875322211111        


Q ss_pred             ----cCCcEEEEeCC---------CCHHHHHhhhC---CCceEEEEeCC-CCCCccccc----HHHHHHHHHHcCCEEEE
Q 016612          116 ----KTGVVVKRVNT---------CDLDEVASAIG---PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLV  174 (386)
Q Consensus       116 ----~~g~~~~~v~~---------~d~~~l~~~~~---~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~  174 (386)
                          ..+...+.++.         .|+++++++++   +++++|+++++ +||||.+.+    +++|.++|+++|+++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~  244 (429)
T 1s0a_A          165 WKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIA  244 (429)
T ss_dssp             GTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEE
T ss_pred             ccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence                11345554441         37889988886   57778887777 899998776    99999999999999999


Q ss_pred             eCCCC-CCCcc-----CCCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHhh-----hhcCCCCChhhHHH
Q 016612          175 DNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQ-----NAEGSGLAPFDCWI  242 (386)
Q Consensus       175 D~a~~-~~~~~-----~~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  242 (386)
                      ||+|+ .+...     +......|++  |+||++++  | +++|++++++ ++.+.+....     .......++..+.+
T Consensus       245 De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~--G~~~iG~~~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~~a  319 (429)
T 1s0a_A          245 DEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG--GTMTLSATLTTR-EVAETISNGEAGCFMHGPTFMGNPLACAA  319 (429)
T ss_dssp             ECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--SSSCCEEEEECH-HHHHHHHTSTTSSCSCCCTTTTCHHHHHH
T ss_pred             eehhhCCcccchHHHhhhcCCCCCEE--EecccccC--CCccceEEEeCH-HHHHHhhcCCCcccccCCCCCCCHHHHHH
Confidence            99997 32211     1122345766  67899864  6 7899999874 5555444321     11122345555555


Q ss_pred             HHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcC
Q 016612          243 CLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK  320 (386)
Q Consensus       243 ~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  320 (386)
                      +..+++.+.  ...++..++.+.+.+.+++..           .+++...    .++.+.++++.+........+.+.+.
T Consensus       320 ~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~~~~----~~~~g~~~~~~~~~~~~~~~l~~~l~  384 (429)
T 1s0a_A          320 ANASLAILESGDWQQQVADIEVQLREQLAPAR-----------DAEMVAD----VRVLGAIGVVETTHPVNMAALQKFFV  384 (429)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGG-----------GCTTEEE----EEEETTEEEEEESSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-----------cCCCEEE----EEEeeEEEEEEECCcccHHHHHHHHH
Confidence            544443221  122334444445555554321           0111111    12346788888754223556667666


Q ss_pred             cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          321 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       321 ~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                      ..|+.++++                            .+++||+++.    ++++++++.|++++++
T Consensus       385 ~~Gi~v~~~----------------------------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          385 EQGVWIRPF----------------------------GKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             HTTEECCCB----------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             HCCCEEecc----------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            678865531                            2459999653    7777777777777654

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.88  E-value=7.8e-22  Score=187.63  Aligned_cols=272  Identities=11%  Similarity=0.007  Sum_probs=168.5

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC--C--
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--C--  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~--  127 (386)
                      .+...++++++++ +|.++.+++++|+ +++. ++.+++++||+|++++++|.++...+    ...|.+++.++.  +  
T Consensus        56 ~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~----~~~G~~~~~v~~~~~~~  130 (446)
T 2x3l_A           56 EEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHAL----DISQQEGHFIETHQSPL  130 (446)
T ss_dssp             SSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHH----HHHTCCEEECEEEECTT
T ss_pred             chHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHH----HHcCCeEEEEeCeeccc
Confidence            3468899999999 9988766666665 8887 55667899999999999999887544    346777777665  2  


Q ss_pred             -------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC-c----cCCCCCCccEEE
Q 016612          128 -------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-L----SRPLELGADIVM  195 (386)
Q Consensus       128 -------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~-~----~~~~~~~~di~~  195 (386)
                             |++++   +.+++++|++++ .|++|.+.|+++|.++|+++|+++|+|++|+... +    .+....++|+++
T Consensus       131 ~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~  206 (446)
T 2x3l_A          131 TNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVV  206 (446)
T ss_dssp             TSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEE
T ss_pred             cCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEE
Confidence                   34555   457899999999 5669999999999999999999999999987511 1    122334789999


Q ss_pred             eccccccccCCCceEEEEEEcChhHH-HHHHHhhh-hcCCCCChhhHHHHHhcCCcHHHH-HHHHHHHHHHHHHHHhhCC
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQN-AEGSGLAPFDCWICLRGVKTMALR-VEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~  272 (386)
                      .|+||+++++.|  +|+++++++.+. ..+..... ......+....+.+..+.+.+... .+...++...+.+++.+. 
T Consensus       207 ~S~~K~l~~~~g--~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-  283 (446)
T 2x3l_A          207 QSFHKTLPALTM--GSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-  283 (446)
T ss_dssp             ECHHHHSSSCTT--CEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-
T ss_pred             ECCccccccccc--cEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-
Confidence            999998877765  699998765432 22221111 112222322222221122111111 111344455555555443 


Q ss_pred             CcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccC-CCCccccccccccccCCCCCHHHH
Q 016612          273 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS-FGSVKSLISMPCFMSHASIPVEVR  351 (386)
Q Consensus       273 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~-~G~~~~~~~~p~~~~~~~~~~~~~  351 (386)
                      .+ ....             .  . ....+++.+++ .....+.+.+...|+.+. .|                      
T Consensus       284 g~-~~~~-------------~--~-~~~~l~i~~~~-~~~~~l~~~L~~~GI~v~~~g----------------------  323 (446)
T 2x3l_A          284 GF-EMLQ-------------V--D-DPLKLLIKYEG-FTGHDIQNWFMNAHIYLELAD----------------------  323 (446)
T ss_dssp             TC-EEEE-------------C--S-STTEEEEECTT-SCHHHHHHHHHHTTEEESEEC----------------------
T ss_pred             CC-EECc-------------C--C-CCeEEEEEeCC-cCHHHHHHHHHHCCCEEEecC----------------------
Confidence            11 1110             0  1 11246666642 224556666655677654 21                      


Q ss_pred             HhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          352 QARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       352 ~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                            .+++|++++    .+++ ++++.|++.++..
T Consensus       324 ------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          324 ------DYQALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             ------SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             ------CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence                  234999996    3778 8999998887654

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.87  E-value=3.3e-22  Score=187.46  Aligned_cols=201  Identities=14%  Similarity=0.050  Sum_probs=131.5

Q ss_pred             eeccCCC--CCCCCCcccceeeeeeeecCCC-CCCCCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcHHHHHH
Q 016612           13 LMNFSNE--FDPYGALSTPLYQTATFKQPSA-TENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGMAALA   84 (386)
Q Consensus        13 ~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~gt~al~   84 (386)
                      .+|||-+  -|..|  .||++++.......+ .......|.+. |.| +++++.+++..-....   ..+.+.+||.|+.
T Consensus        46 kinLgvG~y~d~~g--~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~  123 (420)
T 4h51_A           46 KANLVIGAYRDEQG--RPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVS  123 (420)
T ss_dssp             CEECCSCCCBCTTS--CBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHH
T ss_pred             CEEeecCcccCCCC--CCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHH
Confidence            5788844  23345  334444321111111 12334569888 988 7888777664322222   2344667787764


Q ss_pred             H-HH----HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEE-EeCC---C----CHHHHHhhh---CCCceEEEEeCC
Q 016612           85 A-VT----HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK-RVNT---C----DLDEVASAI---GPWTKLVWVESP  148 (386)
Q Consensus        85 ~-~~----~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~-~v~~---~----d~~~l~~~~---~~~~~~v~~~~~  148 (386)
                      . +.    .+++|||+|++++|.|+.+.    .+++..|.+.+ ..+.   .    |.+.+.+.+   .+++++++.++|
T Consensus       124 ~a~~~l~~~~~~pgd~V~ip~P~w~~y~----~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p  199 (420)
T 4h51_A          124 LGAKLLTRVFDAETTPIYLSDPTWPNHY----GVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCA  199 (420)
T ss_dssp             HHHHHHTTTSCTTTSCEEEEESCCTHHH----HHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCEEEEecCCchhHH----HHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCC
Confidence            2 21    24579999999999999986    44556666532 2221   1    666666554   467888888999


Q ss_pred             CCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC----C-------CCCCccEEEeccccccccCCCceEEEEE
Q 016612          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P-------LELGADIVMHSATKFIAGHSDVMAGVLA  214 (386)
Q Consensus       149 ~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~----~-------~~~~~di~~~S~sK~~~g~~g~~~G~i~  214 (386)
                      |||||.+++   +++|.++|+++++++++|++|..-...+    .       ......+++.|+||.+ +..|.|+|+++
T Consensus       200 ~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RvG~~~  278 (420)
T 4h51_A          200 HNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNM-GLYSERAGTLS  278 (420)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccc-ccccCceEEEE
Confidence            999999985   7899999999999999999986433221    0       1123568999999999 56689999998


Q ss_pred             EcChhH
Q 016612          215 VKGERL  220 (386)
Q Consensus       215 ~~~~~~  220 (386)
                      +..+..
T Consensus       279 ~~~~~~  284 (420)
T 4h51_A          279 LLLKDK  284 (420)
T ss_dssp             EECSCH
T ss_pred             ecccCH
Confidence            875533

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.87  E-value=1.1e-20  Score=187.96  Aligned_cols=210  Identities=13%  Similarity=0.032  Sum_probs=149.0

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC------
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~------  126 (386)
                      ....++++.+++++|.+..+++++|+ +++. ++.+++++||+|++++++|.++...   ++...|++++.++.      
T Consensus       173 ~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~~~~~~  249 (730)
T 1c4k_A          173 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTNRNPYG  249 (730)
T ss_dssp             THHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCCccccC
Confidence            36889999999999999888888887 7776 5677899999999999999887632   25678888887753      


Q ss_pred             ----CCHHHH-----HhhhCCC------c----eEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC-cc--
Q 016612          127 ----CDLDEV-----ASAIGPW------T----KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-LS--  184 (386)
Q Consensus       127 ----~d~~~l-----~~~~~~~------~----~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~-~~--  184 (386)
                          .|++++     +++++++      +    +++++++| |++|.+.|+++|+++|+++|+++++|++|+.+. +.  
T Consensus       250 i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~  328 (730)
T 1c4k_A          250 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPM  328 (730)
T ss_dssp             CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGG
T ss_pred             ccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcc
Confidence                167777     8888765      5    89999998 589999999999999999999999999987432 11  


Q ss_pred             ----CCCC---CCcc----EEEeccccccccCCCceEEEEEEcChhH--------HHHHHHh-hhhcCCCCChhhHHHHH
Q 016612          185 ----RPLE---LGAD----IVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELYFL-QNAEGSGLAPFDCWICL  244 (386)
Q Consensus       185 ----~~~~---~~~d----i~~~S~sK~~~g~~g~~~G~i~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~  244 (386)
                          .+..   .++|    ++++|+||+++|+.+  +|+++++++.+        ...+... ........+....+.+.
T Consensus       329 ~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~--gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~  406 (730)
T 1c4k_A          329 MRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ--TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD  406 (730)
T ss_dssp             GGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTT--CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             cCCcCcccccccCCCCCCEEEEECCCCCCCCCCC--EEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence                1222   2677    999999999987765  68887765543        1222211 11222222322222221


Q ss_pred             hcC---C--cHHHHHHHHHHHHHHHHHHHhh
Q 016612          245 RGV---K--TMALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       245 ~~~---~--~~~~~~~~~~~~~~~l~~~l~~  270 (386)
                      .++   .  ....+.++..++++.+.+.+++
T Consensus       407 aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~  437 (730)
T 1c4k_A          407 VNAAMQEGEAGRKLWHDLLITTIEARKKLIK  437 (730)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            111   1  1244566777788888888877

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.87  E-value=4.5e-21  Score=184.77  Aligned_cols=282  Identities=15%  Similarity=0.155  Sum_probs=182.1

Q ss_pred             hHHHHHHHHHhhcCCCc-----------eEEeCcHHHHHH-HHHHhcC---C------CC--------E--EEecCCCCC
Q 016612           56 TRDALESLLAKLDKADR-----------ALCFTSGMAALA-AVTHLLG---T------GE--------E--IVAGDDLYG  104 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~-----------~i~~~~gt~al~-~~~~~~~---~------g~--------~--Vlv~~~~~~  104 (386)
                      +.+++.+++++++|.+.           .+++++||+|+. ++.+...   +      ||        .  |+++.+.|.
T Consensus       114 le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~  193 (486)
T 1js3_A          114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS  193 (486)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred             HHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcH
Confidence            56677888899998763           578888898864 4443321   1      42        3  788999998


Q ss_pred             cHHHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhCCCce------EEEEeCCCCCCcccccHHHHHHHHHHcCCEEE
Q 016612          105 GTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTK------LVWVESPTNPRQQICDIRKIAEMAHAHGALLL  173 (386)
Q Consensus       105 ~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~~~~~------~v~~~~~~nptG~~~~l~~i~~la~~~~~~li  173 (386)
                      ++.    +.++..|++++.++.+     |+++|+++++++++      +|++++++|++|.+.|+++|.++|+++|++++
T Consensus       194 s~~----~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lh  269 (486)
T 1js3_A          194 SVE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLH  269 (486)
T ss_dssp             HHH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred             HHH----HHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEE
Confidence            875    5555678899999874     89999999976553      88899999999999999999999999999999


Q ss_pred             EeCCCCCCCccCC--C----C-CCccEEEeccccccccCCCceEEEEEEcChhH-HHHHH----Hhhhh-----------
Q 016612          174 VDNSIMSPVLSRP--L----E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELY----FLQNA-----------  230 (386)
Q Consensus       174 ~D~a~~~~~~~~~--~----~-~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~-~~~~~----~~~~~-----------  230 (386)
                      +|++|+.+.+..+  .    . .++|++++|+||++++|.+  +|+++++++.. .+.+.    .+...           
T Consensus       270 vD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~--~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~  347 (486)
T 1js3_A          270 VDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYR  347 (486)
T ss_dssp             EECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC------------CCSCCCGG
T ss_pred             EehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcc--eEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCcc
Confidence            9999986654221  1    1 2679999999999977654  89999987653 22210    11000           


Q ss_pred             -----cCCCCChhhHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEE
Q 016612          231 -----EGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  303 (386)
Q Consensus       231 -----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~  303 (386)
                           .+........++.+.  +.+.+....++..++++.+.+.+++.+.+              .+..   +...++++
T Consensus       348 ~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~--------------~~~~---~~~~~~v~  410 (486)
T 1js3_A          348 HWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRF--------------EVCA---EVTLGLVC  410 (486)
T ss_dssp             GSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTE--------------EECS---CCCSSEEE
T ss_pred             ccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCe--------------EEeC---CCceeEEE
Confidence                 011112233333332  22334555566667777777777765422              1110   01356788


Q ss_pred             EEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-c----CChHHHHHHH
Q 016612          304 FLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-I----EDVNDLISDL  377 (386)
Q Consensus       304 ~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-~----~~~~~~i~~l  377 (386)
                      |.+.+ .....++.+.+...|+....+..   +                   + +.+++|++++ .    ++++++++.|
T Consensus       411 f~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~-------------------~-~~~~lRi~~~~~~~t~~di~~~~~~l  467 (486)
T 1js3_A          411 FRLKGSDGLNEALLERINSARKIHLVPCR---L-------------------R-GQFVLRFAICSRKVESGHVRLAWEHI  467 (486)
T ss_dssp             EEESSCHHHHHHHHHHHHHHTSCBCEEEE---E-------------------T-TEEEEEEECCCTTCCHHHHHHHHHHH
T ss_pred             EEecChHHHHHHHHHHHHhcCCEEEEEEE---E-------------------C-CEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            88753 22346666666555543211110   0                   0 2456999974 3    4677777777


Q ss_pred             HHHHhc
Q 016612          378 DKALRT  383 (386)
Q Consensus       378 ~~~l~~  383 (386)
                      ++.+++
T Consensus       468 ~~~~~~  473 (486)
T 1js3_A          468 RGLAAE  473 (486)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776643

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.87  E-value=2.3e-21  Score=185.00  Aligned_cols=283  Identities=13%  Similarity=0.134  Sum_probs=177.4

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHH-HhcC--------CCCEEEecCCCCCcHHHHHhhhcc-------
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVT-HLLG--------TGEEIVAGDDLYGGTDRLLSRVTP-------  115 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~-~~~~--------~g~~Vlv~~~~~~~~~~~~~~~~~-------  115 (386)
                      .+.+.++++.++++++.  ++.+++++|++|+.+++ .+..        +||+|++.+|.|++..........       
T Consensus        92 ~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~  171 (449)
T 3a8u_X           92 HPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKL  171 (449)
T ss_dssp             CHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTT
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccc
Confidence            35788999999999854  36777888899987443 3332        689999999999875321112211       


Q ss_pred             ----cCCcEEEEeCC--------CC--------HHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHH
Q 016612          116 ----KTGVVVKRVNT--------CD--------LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHA  167 (386)
Q Consensus       116 ----~~g~~~~~v~~--------~d--------~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  167 (386)
                          ..++..+.++.        .|        ++++++.++    +++++|++++.+|++|.+.+    +++|.++|++
T Consensus       172 ~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~  251 (449)
T 3a8u_X          172 FGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQ  251 (449)
T ss_dssp             TCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred             cCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHH
Confidence                12344444432        14        888998886    46788888877788998887    9999999999


Q ss_pred             cCCEEEEeCCCC-CCCccC-----CCCCCccEEEeccccccccCCC-ceEEEEEEcChhHHHHHHHhh---------hhc
Q 016612          168 HGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQ---------NAE  231 (386)
Q Consensus       168 ~~~~li~D~a~~-~~~~~~-----~~~~~~di~~~S~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~~---------~~~  231 (386)
                      ||++||+||+|+ .+....     ......|++  |+||++++  | +|+|+++++ +++.+.+....         ...
T Consensus       252 ~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~--G~~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~  326 (449)
T 3a8u_X          252 HNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN--GAIPMGAVIAS-TEIYQTFMNQPTPEYAVEFPHGY  326 (449)
T ss_dssp             HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT--TSSCCEEEEEE-HHHHHHHHTCSSCTTSCSSCCCC
T ss_pred             hCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC--CCCceEEEEEC-HHHHHHhhccCcccccccccccC
Confidence            999999999995 443221     112345766  77899964  5 789999887 45665554321         111


Q ss_pred             CCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH
Q 016612          232 GSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  309 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~  309 (386)
                      ....++..++++..+++.+..  ..++..++.+.+.+.+++..           .++..    ...++.+.++++.+...
T Consensus       327 t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~~----~~~~~~g~~~~i~~~~~  391 (449)
T 3a8u_X          327 TYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIK-----------GAKNV----IDIRNFGLAGAIQIAPR  391 (449)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-----------TSTTE----EEEEEETTEEEEEECCB
T ss_pred             CCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-----------cCCCe----EEEeeeEEEEEEEEecC
Confidence            223455555555554443221  23334444444555554321           11111    01134578889888532


Q ss_pred             H-----hHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHH
Q 016612          310 A-----LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKA  380 (386)
Q Consensus       310 ~-----~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~  380 (386)
                      .     ....+.+.+...|+.+++++                            +++||+++    .++++++++.|+++
T Consensus       392 ~~~~~~~~~~~~~~l~~~Gv~v~~~g----------------------------~~iRis~~~~~t~~~i~~~l~~l~~~  443 (449)
T 3a8u_X          392 DGDAIVRPFEAGMALWKAGFYVRFGG----------------------------DTLQFGPTFNSKPQDLDRLFDAVGEV  443 (449)
T ss_dssp             TTBSSHHHHHHHHHHHHHTEECEEET----------------------------TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHCCcEEecCC----------------------------CEEEEECCCcCCHHHHHHHHHHHHHH
Confidence            1     12356666666787665421                            34999964    47888888888888


Q ss_pred             HhcC
Q 016612          381 LRTG  384 (386)
Q Consensus       381 l~~~  384 (386)
                      +++.
T Consensus       444 l~~~  447 (449)
T 3a8u_X          444 LNKL  447 (449)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8754

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.87  E-value=1e-20  Score=180.35  Aligned_cols=283  Identities=16%  Similarity=0.136  Sum_probs=167.5

Q ss_pred             HHHHHHHhhcCCCc----e-EEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHh----hhcccCCcE--EEEeC-
Q 016612           59 ALESLLAKLDKADR----A-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTGVV--VKRVN-  125 (386)
Q Consensus        59 ~l~~~l~~~~g~~~----~-i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~----~~~~~~g~~--~~~v~-  125 (386)
                      ..++++++++|.+.    . ++++||++|+. ++.++++|||+|+++++.|+++.....    ..+...|..  ++.++ 
T Consensus       104 ~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~v  183 (490)
T 2a7v_A          104 LCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL  183 (490)
T ss_dssp             HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCB
T ss_pred             HHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccc
Confidence            34499999999985    3 34469998876 677799999999999999876532100    012233432  33332 


Q ss_pred             -----CCCHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCC-----CccCCCCCCccEE
Q 016612          126 -----TCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VLSRPLELGADIV  194 (386)
Q Consensus       126 -----~~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~-----~~~~~~~~~~di~  194 (386)
                           ..|++++++.+. .++++|+++.++||  ...|+++|.++|+++|+++++|++|+.+     ....+.. ++|++
T Consensus       184 d~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv  260 (490)
T 2a7v_A          184 NPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIV  260 (490)
T ss_dssp             CTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEE
T ss_pred             ccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEE
Confidence                 238999999886 47899998888886  4679999999999999999999998643     2233333 68999


Q ss_pred             EeccccccccCCCceEEEEEEcCh--------------hHHHHHHHhhhhcCC-CCChhhHHHHH----hcC-CcHHHHH
Q 016612          195 MHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEGS-GLAPFDCWICL----RGV-KTMALRV  254 (386)
Q Consensus       195 ~~S~sK~~~g~~g~~~G~i~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~-~~~~~~~  254 (386)
                      ++|+||+++||.   +|+++++++              ++.+.++........ +......+++.    ..+ ..+..+.
T Consensus       261 ~~S~hK~l~Gp~---GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~  337 (490)
T 2a7v_A          261 TTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYS  337 (490)
T ss_dssp             EEESSGGGCSCS---CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             EECCcccCcccc---chheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHH
Confidence            999999997764   699998864              244545443322211 12221111111    111 2335566


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHHHHhhcCcceeccCCCCccc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKS  333 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~~~~G~~~~  333 (386)
                      ++..++++.+.+.|.+..         +      .+..  ......++++.+... ...+++.+.|...||.++.+..  
T Consensus       338 ~~~~~na~~L~~~L~~~G---------~------~v~~--~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~--  398 (490)
T 2a7v_A          338 LQVLKNARAMADALLERG---------Y------SLVS--GGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTC--  398 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTT---------C------EEGG--GSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECC--
T ss_pred             HHHHHHHHHHHHHHHHcC---------c------EEec--CCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCcc--
Confidence            778888999998888752         1      1110  011246777777432 2345566666666777654321  


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEec--------cCChHHHHHHHHHHHh
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDKALR  382 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i~~l~~~l~  382 (386)
                          |.-.            ....++.||++..        .++++++++.|.++++
T Consensus       399 ----p~d~------------~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          399 ----PGDR------------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             ----TTCC------------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ----CCCC------------CCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence                1000            0112456999762        3777777888777765

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.86  E-value=4.2e-21  Score=185.43  Aligned_cols=284  Identities=14%  Similarity=0.140  Sum_probs=177.6

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeCcHHHHHH-HHHH----hc---------CC------CC-EEEecCCCCCcHHHHHh
Q 016612           56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTH----LL---------GT------GE-EIVAGDDLYGGTDRLLS  111 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~gt~al~-~~~~----~~---------~~------g~-~Vlv~~~~~~~~~~~~~  111 (386)
                      +.+++++++++++|.+   ..+++++||+|+. ++..    ++         .+      |+ .|+++.+.|.++...+.
T Consensus       141 le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~  220 (497)
T 2qma_A          141 VEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS  220 (497)
T ss_dssp             HHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHH
Confidence            4566688899999873   5777788888875 3433    22         13      46 78999999998865542


Q ss_pred             hhcccCCc-EEEEeCCC-----CHHHHHhhhCCC----ce--EEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC
Q 016612          112 RVTPKTGV-VVKRVNTC-----DLDEVASAIGPW----TK--LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM  179 (386)
Q Consensus       112 ~~~~~~g~-~~~~v~~~-----d~~~l~~~~~~~----~~--~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~  179 (386)
                       ... .|. +++.++.+     |+++|++.++++    ++  +|++++++|++|.+.|+++|.++|+++|+++++|++|+
T Consensus       221 -~~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~  298 (497)
T 2qma_A          221 -WMG-LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYG  298 (497)
T ss_dssp             -HTT-SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTG
T ss_pred             -HcC-CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhh
Confidence             221 133 67777764     889999888642    44  88889999999999999999999999999999999998


Q ss_pred             CCCccCC-----CCC-CccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh-h--hcC--------------CCCC
Q 016612          180 SPVLSRP-----LEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-N--AEG--------------SGLA  236 (386)
Q Consensus       180 ~~~~~~~-----~~~-~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~-~--~~~--------------~~~~  236 (386)
                      .+.....     ... ++|+++.|+||++++|.+  +|+++++++...+.+.... +  ...              ....
T Consensus       299 ~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~--~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~  376 (497)
T 2qma_A          299 GALILSSHKSRLKGVERAHSISVDFHKLFYQTIS--CGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFD  376 (497)
T ss_dssp             GGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS--CEEEEESCGGGGGGGCC--------------------CCSCCCT
T ss_pred             HHHHhCcchHhhcCcccCCEEEEcchhccCCCcc--eEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchh
Confidence            7654322     122 679999999999988754  7998888665322111000 0  000              0011


Q ss_pred             hhhHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----
Q 016612          237 PFDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----  309 (386)
Q Consensus       237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----  309 (386)
                      ....++.+..+.  .+....++..++++.+.+.+++.+.+              .++.   +..+++++|.+...     
T Consensus       377 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~--------------~~~~---~~~~~~v~f~~~~~~~~~~  439 (497)
T 2qma_A          377 ALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQF--------------ELLA---EPSLSTVLFRATHETADLD  439 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTE--------------EECS---CCSSSEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCe--------------EEEc---CCCceEEEEEEcCCccCHH
Confidence            222333333332  23344555666777777777754321              1111   11356888887432     


Q ss_pred             HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-c----cCChHHHHHHHHHHHhc
Q 016612          310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~----~~~~~~~i~~l~~~l~~  383 (386)
                      ....++.+.+...|+.+..+..   .                    .+.+++|+++ +    .++++++++.|++++++
T Consensus       440 ~l~~~l~~~l~~~G~~~~~~~~---~--------------------~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~  495 (497)
T 2qma_A          440 ELNKALRLEALTRGIAVLGETI---V--------------------DGKTALKFTILNPCLTTSDFESLLSKINMLAVE  495 (497)
T ss_dssp             HHHHHHHHHHHHHTSCBCEEEE---E--------------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEeeE---E--------------------CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            2234555666555654322110   0                    0235699998 4    36777777777776654

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.86  E-value=1.6e-21  Score=186.07  Aligned_cols=322  Identities=15%  Similarity=0.161  Sum_probs=190.2

Q ss_pred             eeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC--CCchHHHHHHHHHhhcC---CCceEEeCcHHHHHHH
Q 016612           13 LMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDK---ADRALCFTSGMAALAA   85 (386)
Q Consensus        13 ~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g---~~~~i~~~~gt~al~~   85 (386)
                      .+++..+  ...+|..+|.+.++......   ..  ..|+..  ..+.+.+++++++++++   .++.++++||++|+.+
T Consensus        63 ylD~~~~~~~~~lGh~~p~v~~A~~~~~~---~~--~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~  137 (451)
T 3oks_A           63 LIDLGSGIAVTTVGNSAPKVVEAVRSQVG---DF--THTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVEN  137 (451)
T ss_dssp             EEESSHHHHTCTTCTTCHHHHHHHHHHHT---TC--SCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHH
T ss_pred             EEEcCCCccccccCCCCHHHHHHHHHHHH---hc--ccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHH
Confidence            4555422  34577666665553222111   11  223332  34578899999999985   3468888999999875


Q ss_pred             HHH-hc--CCCCEEEecCCCCCcHHHHHhhhc----------ccCCcEEEEeCCC------------------CHHHHHh
Q 016612           86 VTH-LL--GTGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNTC------------------DLDEVAS  134 (386)
Q Consensus        86 ~~~-~~--~~g~~Vlv~~~~~~~~~~~~~~~~----------~~~g~~~~~v~~~------------------d~~~l~~  134 (386)
                      ++. ..  ..++.|++.++.|+++........          ......+..++..                  +++.+++
T Consensus       138 Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  217 (451)
T 3oks_A          138 AVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAIT  217 (451)
T ss_dssp             HHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHH
Confidence            443 33  345889999999887643322211          1111134444433                  2333333


Q ss_pred             hh----C-CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccc
Q 016612          135 AI----G-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSAT  199 (386)
Q Consensus       135 ~~----~-~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~s  199 (386)
                      .+    . +++++|+++..+++.|.+.+    +++|.++|++||++||+||+|.. +...     .......|++  |+|
T Consensus       218 ~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~s  295 (451)
T 3oks_A          218 VIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTA  295 (451)
T ss_dssp             HHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EEC
T ss_pred             HHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eeh
Confidence            33    3 45667777776766677765    99999999999999999999862 2211     1112345666  678


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceE
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKV  277 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~  277 (386)
                      |.+++  |+|+|+++++ +++.+.+.........+.++..++++...++.+..  ..++..++.+.+.+.+++..     
T Consensus       296 K~l~~--G~~iG~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~-----  367 (451)
T 3oks_A          296 KGIAG--GLPLSAVTGR-AEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQ-----  367 (451)
T ss_dssp             GGGGT--TSSCEEEEEE-HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             hhhhC--CcceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----
Confidence            99964  6899999986 55655443333333445666666666555543221  23334444444444444320     


Q ss_pred             ecCCCCCCCchhhhhhccCCCCceEEEEe-------CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHH
Q 016612          278 NYAGLPEHPGHELHYSQAKGAGSVLSFLT-------GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  350 (386)
Q Consensus       278 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~  350 (386)
                           ..++..    ...++.|.++++.+       ++.....++.+.+...|+.+.+++.                   
T Consensus       368 -----~~~~~~----~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------  419 (451)
T 3oks_A          368 -----AEDDRI----GDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT-------------------  419 (451)
T ss_dssp             -----HHCTTE----EEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECT-------------------
T ss_pred             -----hhCCCe----EEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCC-------------------
Confidence                 000100    11244578888887       3445577788888888887665432                   


Q ss_pred             HHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          351 RQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       351 ~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                            ..+++|++++    .+++++.++.|++++++
T Consensus       420 ------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          420 ------YGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             ------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             ------CCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence                  1356999865    47788888888888764

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.86  E-value=1.6e-20  Score=178.20  Aligned_cols=288  Identities=15%  Similarity=0.135  Sum_probs=177.8

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHH-hc--CCCCEEEecCCCCCcHHHHHhhhc----------ccCC
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTH-LL--GTGEEIVAGDDLYGGTDRLLSRVT----------PKTG  118 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~-~~--~~g~~Vlv~~~~~~~~~~~~~~~~----------~~~g  118 (386)
                      .+.+.++++.++++++.  ++.++++||++|+..++. +.  ..+++|++.+|.|++.........          ...|
T Consensus        84 ~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  163 (433)
T 1zod_A           84 SRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG  163 (433)
T ss_dssp             CHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT
T ss_pred             CHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCC
Confidence            35788999999999874  467777888999875443 22  346799999999976532211111          1125


Q ss_pred             cEEEEeCC------C---------CHHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEe
Q 016612          119 VVVKRVNT------C---------DLDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVD  175 (386)
Q Consensus       119 ~~~~~v~~------~---------d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D  175 (386)
                      +..+.++.      .         |++++++.++    +++++|++++.+||+|.+.+    +++|.++|++||++||+|
T Consensus       164 ~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D  243 (433)
T 1zod_A          164 SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD  243 (433)
T ss_dssp             EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE
T ss_pred             ceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Confidence            55544432      1         3888988886    56778887777788998765    999999999999999999


Q ss_pred             CCCC-CCCccCC-----CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh--cCCCCChhhHHHHHhcC
Q 016612          176 NSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWICLRGV  247 (386)
Q Consensus       176 ~a~~-~~~~~~~-----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  247 (386)
                      |+|+ .+.....     .....|++  |+||++++  |+|+|++++++ ++.+.+......  .....++..+.++..++
T Consensus       244 Ev~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~--G~~ig~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal  318 (433)
T 1zod_A          244 EAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA--GLPLAAIVTSA-AIEERAHELGYLFYTTHVSDPLPAAVGLRVL  318 (433)
T ss_dssp             CTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT--TSSCEEEEECH-HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHH
T ss_pred             ccccCCCcCchHhHHhhcCCCCCEE--EecccccC--CCCeeEEEEhH-HHHHhhccCCCCCCCCCCcCHHHHHHHHHHH
Confidence            9997 3322111     12245654  78999964  68999999974 566555442111  22344555555554444


Q ss_pred             CcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--------HHhHHHHHh
Q 016612          248 KTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------LALSKHVVE  317 (386)
Q Consensus       248 ~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~l~~  317 (386)
                      +.+..  ..++..++.+.+.+.+++..       ..+   +..    ...++.+.++++.+..        .....++.+
T Consensus       319 ~~~~~~~~~~~~~~~~~~l~~~l~~l~-------~~~---~~~----~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~  384 (433)
T 1zod_A          319 DVVQRDGLVARANVMGDRLRRGLLDLM-------ERF---DCI----GDVRGRGLLLGVEIVKDRRTKEPADGLGAKITR  384 (433)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHH-------HHC---TTE----EEEEEETTEEEEEEEEETTTTEECTTHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHH-------HhC---CCe----EEEEEEEEEEEEEEecCccccCCChHHHHHHHH
Confidence            32211  22333444444444444310       000   000    0113356788887632        123566777


Q ss_pred             hcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          318 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       318 ~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      .+...|+.+.+|..+                      + .++++||+++    .++++++++.|++++++
T Consensus       385 ~l~~~Gv~v~~~~~~----------------------~-~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~  431 (433)
T 1zod_A          385 ECMNLGLSMNIVQLP----------------------G-MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER  431 (433)
T ss_dssp             HHHHTTEECCEECCT----------------------T-SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCeEeccCCC----------------------C-CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence            777778877665421                      1 1467999864    47788888888887765

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.86  E-value=2.2e-21  Score=185.34  Aligned_cols=317  Identities=16%  Similarity=0.127  Sum_probs=182.6

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEeCcHHHHHHHHHH
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTH   88 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~gt~al~~~~~   88 (386)
                      ..++++.+  ..++|..+|.+.++......   . . ..|. ...+++.++.+++++.+ +.++.++++||++|+.+++.
T Consensus        58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~---~-~-~~~~-~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~  131 (453)
T 2cy8_A           58 VYLDFFGGHGALVLGHGHPRVNAAIAEALS---H-G-VQYA-ASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALR  131 (453)
T ss_dssp             EEEESCTTTTSCTTCBTCHHHHHHHHHHHT---T-T-CSSC-SSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHH
T ss_pred             EEEECcccHhhcccCCCCHHHHHHHHHHHH---h-C-CCCC-CCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHH
Confidence            35566522  25677755555543222111   1 1 1121 12357899999999888 45578888899999875433


Q ss_pred             h---cCCCCEEEecCCCCCcHHHHHhhhc-------ccCCc------EEEEeCCCCHHHHHhhhC---CCceEEEEeCCC
Q 016612           89 L---LGTGEEIVAGDDLYGGTDRLLSRVT-------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWVESPT  149 (386)
Q Consensus        89 ~---~~~g~~Vlv~~~~~~~~~~~~~~~~-------~~~g~------~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~  149 (386)
                      .   +.+++.|++.+|.|+++........       ...|+      .+..++..|++++++.++   +++++|++++.+
T Consensus       132 ~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~  211 (453)
T 2cy8_A          132 VARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVG  211 (453)
T ss_dssp             HHHHHHCCCEEEEECC----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSE
T ss_pred             HHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCC
Confidence            3   4455788888898886543211101       01233      345566679999998886   477888888877


Q ss_pred             CCCccccc----HHHHHHHHHHcCCEEEEeCCCCCCCcc-C-----CCCCCccEEEeccccccccCCCceEEEEEEcChh
Q 016612          150 NPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-R-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       150 nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~~-~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      |++|.+.+    +++|.++|++||++||+||+|+ +... .     ......|++  |+||++++  |+++|++++++ +
T Consensus       212 ~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~--G~~~G~v~~~~-~  285 (453)
T 2cy8_A          212 SHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASAG--GLPGGILGGRE-D  285 (453)
T ss_dssp             HHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGGT--TSSCEEEEECH-H
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhhC--CcceEEEechH-H
Confidence            88998887    9999999999999999999997 3211 1     112345765  78999964  67899999874 4


Q ss_pred             HHHHHHH-----hhhhcCCCCChhhHHHHHhcCCc-H-HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhh
Q 016612          220 LAKELYF-----LQNAEGSGLAPFDCWICLRGVKT-M-ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  292 (386)
Q Consensus       220 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~  292 (386)
                      +.+.+..     .........++..++++...++. + ....++..++.+.+.+.+++...    ..+ +.         
T Consensus       286 ~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~-~~---------  351 (453)
T 2cy8_A          286 VMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFA----RKG-LN---------  351 (453)
T ss_dssp             HHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH----HTT-CC---------
T ss_pred             HHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCC-Cc---------
Confidence            5443322     01111234556666655554443 2 12233444444455555443210    000 00         


Q ss_pred             hccCCCCceEEEEeCC-------------------HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          293 SQAKGAGSVLSFLTGS-------------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       293 ~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                      ...++.|.++++.+.+                   .....++.+.+...|+.+.++.                       
T Consensus       352 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~-----------------------  408 (453)
T 2cy8_A          352 WLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG-----------------------  408 (453)
T ss_dssp             EEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTTT-----------------------
T ss_pred             EEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCCC-----------------------
Confidence            0113467889998863                   1235567777777788663321                       


Q ss_pred             cCCCCCeEEEEe--ccCChHHHHHHHHHHHhc
Q 016612          354 RGLTEDLVRISV--GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       354 ~~~~~~~iRis~--~~~~~~~~i~~l~~~l~~  383 (386)
                            .+|+++  +.++++++++.|++++++
T Consensus       409 ------~~~l~~~~t~~~i~~~l~~l~~~l~~  434 (453)
T 2cy8_A          409 ------SVFLSAQHEREHVEHLVTTFDRVLDR  434 (453)
T ss_dssp             ------EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------CEEeeccCCHHHHHHHHHHHHHHHHH
Confidence                  155553  348888889999888764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.86  E-value=1.3e-21  Score=186.63  Aligned_cols=322  Identities=16%  Similarity=0.180  Sum_probs=188.9

Q ss_pred             eeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC--CCchHHHHHHHHHhhcCC---CceEEeCcHHHHHHH
Q 016612           13 LMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDKA---DRALCFTSGMAALAA   85 (386)
Q Consensus        13 ~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~   85 (386)
                      .+++..+  ...+|..+|.+.++......   ..  ..|+..  ..+.+.+++++++++++.   +++++++||++|+.+
T Consensus        66 ylD~~~~~~~~~lGh~~p~v~~A~~~~~~---~~--~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~  140 (453)
T 4ffc_A           66 FIDLGAGIAVTTVGASHPAVAAAIADQAT---HF--THTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVEN  140 (453)
T ss_dssp             EEESSHHHHTCTTCTTCHHHHHHHHHHHH---HC--SCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHH
T ss_pred             EEEcCCCcccCcCCCCCHHHHHHHHHHHH---hc--cccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHH
Confidence            4555522  34577766665553221111   11  123332  345789999999999863   468888899999875


Q ss_pred             HHH-hc--CCCCEEEecCCCCCcHHHHHhhhcc----------cCCcEEEEeCCC----C-------------HHHHHhh
Q 016612           86 VTH-LL--GTGEEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNTC----D-------------LDEVASA  135 (386)
Q Consensus        86 ~~~-~~--~~g~~Vlv~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~----d-------------~~~l~~~  135 (386)
                      ++. ..  ..++.|++.++.|++.......+..          .....+..++..    |             .+.+++.
T Consensus       141 alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~  220 (453)
T 4ffc_A          141 AIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQ  220 (453)
T ss_dssp             HHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHh
Confidence            443 22  3568899999999876433222211          111133334332    3             3566666


Q ss_pred             hCC-CceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCccCC-----CCCCccEEEecccccccc
Q 016612          136 IGP-WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAG  204 (386)
Q Consensus       136 ~~~-~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~~~-----~~~~~di~~~S~sK~~~g  204 (386)
                      +.+ ++++|+++..++..|.+.+    +++|.++|++||+++|+||+|.. +.....     .....|++  ++||.+++
T Consensus       221 i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~~  298 (453)
T 4ffc_A          221 IGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIAG  298 (453)
T ss_dssp             TCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT
T ss_pred             cCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhcC
Confidence            654 4555555555555556655    99999999999999999999862 222111     12234655  57899954


Q ss_pred             CCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecCCC
Q 016612          205 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  282 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  282 (386)
                        |+|+|+++++ +++.+.+.........+.++..++++...++.+.  ...++..++.+.+.+.+++..          
T Consensus       299 --G~~~G~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~----------  365 (453)
T 4ffc_A          299 --GMPLSAVTGR-AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALA----------  365 (453)
T ss_dssp             --TSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH----------
T ss_pred             --CcCeEEEEEC-HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----------
Confidence              6899999886 5565544333333334556666666555544221  112333344444444444320          


Q ss_pred             CCCCchhhhhhccCCCCceEEEEe-------CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcC
Q 016612          283 PEHPGHELHYSQAKGAGSVLSFLT-------GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  355 (386)
Q Consensus       283 ~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~  355 (386)
                      ..++..    ...++.|.++++.+       ++.....++.+.+...|+.+.+++.                        
T Consensus       366 ~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------------------  417 (453)
T 4ffc_A          366 EEVDII----GEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT------------------------  417 (453)
T ss_dssp             HHCSSE----EEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT------------------------
T ss_pred             hhCCCe----EEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC------------------------
Confidence            000110    11244578888887       3445577888888888887765432                        


Q ss_pred             CCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          356 LTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       356 ~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                       ..+++|++++    .+++++.++.|++++++
T Consensus       418 -~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  448 (453)
T 4ffc_A          418 -FGNVIRLLPPLVIGDDLLDEGITALSDIIRA  448 (453)
T ss_dssp             -TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence             1356999865    47788888888888865

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.86  E-value=4.6e-20  Score=175.74  Aligned_cols=290  Identities=21%  Similarity=0.151  Sum_probs=175.1

Q ss_pred             HHHH-HHHHhhcCCCceEE-eCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhh-hcccCCcEEEEeCC------C
Q 016612           58 DALE-SLLAKLDKADRALC-FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNT------C  127 (386)
Q Consensus        58 ~~l~-~~l~~~~g~~~~i~-~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~-~~~~~g~~~~~v~~------~  127 (386)
                      +++. +++++++|.+...+ ++||++|+. ++.+++++||+|++++|.|+++...... .....+..++.++.      .
T Consensus        93 e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (447)
T 3h7f_A           93 ENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLI  172 (447)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSC
T ss_pred             HHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCc
Confidence            4455 89999999986665 899998876 5667899999999999998773210000 01112234444442      3


Q ss_pred             CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC-----ccCCCCCCccEEEeccccc
Q 016612          128 DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKF  201 (386)
Q Consensus       128 d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~-----~~~~~~~~~di~~~S~sK~  201 (386)
                      |++++++.+. .++++|++++++||++.  ++++|.++|+++|+++|+|++|+.+.     ...+. .+.|++++|+||+
T Consensus       173 d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~  249 (447)
T 3h7f_A          173 DMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKT  249 (447)
T ss_dssp             CHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGG
T ss_pred             CHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcC
Confidence            8999999885 57899999999998876  99999999999999999999986432     22223 3679999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhcCCC-CChh-hHH--HHH-hcCC-cHHHHHHHHHHHHHHHHHHHhhCCCcc
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG-LAPF-DCW--ICL-RGVK-TMALRVEKQQDNAQKIAEFLASHPRVK  275 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~--~~~-~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~  275 (386)
                      ++|+   |+|++++++ ++.+.+.........+ .... ...  +.. .... .+..+.++..++.+.+.+.|++..   
T Consensus       250 l~G~---~gG~i~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---  322 (447)
T 3h7f_A          250 LGGG---RSGLIVGKQ-QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPD---  322 (447)
T ss_dssp             GCCC---SCEEEEECG-GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHH---
T ss_pred             CCCC---CeEEEEECH-HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence            9654   579999874 4555554433322222 1111 111  111 1222 344556667777777777776530   


Q ss_pred             eEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhc
Q 016612          276 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  354 (386)
Q Consensus       276 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~  354 (386)
                       ...+++      .+..  ....+.++++.+... .....+.+.+...|+.++......-...|                
T Consensus       323 -~~~~g~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p----------------  377 (447)
T 3h7f_A          323 -VAKAGV------SVVS--GGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPP----------------  377 (447)
T ss_dssp             -HHHTTC------EEGG--GSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC--------------------------
T ss_pred             -ccCCCe------EEec--CCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCC----------------
Confidence             000011      1111  012345667766321 12334444444556765521100000001                


Q ss_pred             CCCCCeEEEEec--------cCChHHHHHHHHHHHhc
Q 016612          355 GLTEDLVRISVG--------IEDVNDLISDLDKALRT  383 (386)
Q Consensus       355 ~~~~~~iRis~~--------~~~~~~~i~~l~~~l~~  383 (386)
                       ..++.+|++..        .++++++++.|.++|++
T Consensus       378 -~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          378 -MVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             ----CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred             -CCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence             12466999863        37888888888888764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.86  E-value=5.6e-20  Score=175.68  Aligned_cols=165  Identities=18%  Similarity=0.167  Sum_probs=127.0

Q ss_pred             CchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCC-CcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLY-GGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~-~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      .+...++++.++++++.++.+++++|++|+. ++.+++++||  +++.+.| +++.    ..+...|.+++.++.+    
T Consensus        74 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~----~~~~~~G~~~~~v~~~~~~~  147 (456)
T 2ez2_A           74 SENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTR----YHQEKNGAVFVDIVRDEAHD  147 (456)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHH----HHHHHTTCEEEECBCGGGGC
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhH----HHHHHcCCEEEEeccccccc
Confidence            3567889999999999999999999999987 5556789999  7788888 5544    3445678888887542    


Q ss_pred             -----------CHHHHHhhhCCCc----eEEEEeCCCC-CCccccc---HHHHHHHHHHcCCEEEEeCCCCCC-------
Q 016612          128 -----------DLDEVASAIGPWT----KLVWVESPTN-PRQQICD---IRKIAEMAHAHGALLLVDNSIMSP-------  181 (386)
Q Consensus       128 -----------d~~~l~~~~~~~~----~~v~~~~~~n-ptG~~~~---l~~i~~la~~~~~~li~D~a~~~~-------  181 (386)
                                 |+++|++++++++    ++|++++|+| |||.+.+   +++|.++|++||+++|+|++|+.|       
T Consensus       148 ~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~  227 (456)
T 2ez2_A          148 AGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKE  227 (456)
T ss_dssp             TTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccc
Confidence                       7899999887555    8999999999 9999886   999999999999999999998763       


Q ss_pred             --C-cc-CC-------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh
Q 016612          182 --V-LS-RP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (386)
Q Consensus       182 --~-~~-~~-------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~  227 (386)
                        . +. ..       .....|+++.|++|++ ++ | ++|+++++++++.+.+...
T Consensus       228 ~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~-~~-~-~gG~~~~~~~~~~~~~~~~  281 (456)
T 2ez2_A          228 QEQGFENKSIAEIVHEMFSYADGCTMSGKKDC-LV-N-IGGFLCMNDDEMFSSAKEL  281 (456)
T ss_dssp             HSTTCTTSCHHHHHHHHHTTCSEEEEETTTTT-CC-S-SCEEEEESCHHHHHHHHHH
T ss_pred             cccccCCcchhhhhhhhcccCCEEEEeCcccC-CC-C-ceeEEEECCHHHHHHHHHH
Confidence              1 11 11       0123688888888986 43 3 5899998656666555443

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.86  E-value=5.2e-22  Score=189.43  Aligned_cols=323  Identities=12%  Similarity=0.071  Sum_probs=196.5

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHH
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVT   87 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~   87 (386)
                      +.+++..+  ..++|..+|.+.++......+   .....++....+...+++++++++++.  +++++++||++|+.+++
T Consensus        76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~---~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Al  152 (457)
T 3tfu_A           76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRV---MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAA  152 (457)
T ss_dssp             EEEETTHHHHTCTTCBTCHHHHHHHHHHHHH---CSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHH
T ss_pred             EEEECCCcHhhhccCCCCHHHHHHHHHHHHh---ccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHH
Confidence            45666522  456888676665542221111   111111222345788999999999954  47888889999987443


Q ss_pred             -HhcC-------CC-CEEEecCCCCCcHHHHHhhhcc------------cCCcEEEEeCC-----CCHHHHHhhhC---C
Q 016612           88 -HLLG-------TG-EEIVAGDDLYGGTDRLLSRVTP------------KTGVVVKRVNT-----CDLDEVASAIG---P  138 (386)
Q Consensus        88 -~~~~-------~g-~~Vlv~~~~~~~~~~~~~~~~~------------~~g~~~~~v~~-----~d~~~l~~~~~---~  138 (386)
                       .+..       +| +.|++.++.|++..........            ..+.....++.     .|+++|++.++   +
T Consensus       153 k~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~  232 (457)
T 3tfu_A          153 KMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG  232 (457)
T ss_dssp             HHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC
Confidence             3332       44 5888888888765322111110            11222222221     27888998887   6


Q ss_pred             CceEEEEeC-CCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCC
Q 016612          139 WTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSD  207 (386)
Q Consensus       139 ~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g  207 (386)
                      ++++|++++ ++|++|.+.+    +++|.++|++||+++|+||+|.. +....     ......|++  |+||.++| +.
T Consensus       233 ~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~g-G~  309 (457)
T 3tfu_A          233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTG-GY  309 (457)
T ss_dssp             GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TS
T ss_pred             CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhC-CC
Confidence            789999999 9999999875    99999999999999999999862 22111     112346777  77999865 22


Q ss_pred             ceEEEEEEcChhHHHHHHHh-----hhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHhhCCCcceEecC
Q 016612          208 VMAGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYA  280 (386)
Q Consensus       208 ~~~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  280 (386)
                      +++|+++++ +++.+.+...     ......+.++..++++...++.+.  ...++..+..+.+.+.+++..        
T Consensus       310 ~~lG~v~~~-~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~--------  380 (457)
T 3tfu_A          310 LSLAATLCT-ADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR--------  380 (457)
T ss_dssp             SCCEEEEEE-HHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG--------
T ss_pred             cceEEEEEc-HHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--------
Confidence            579999987 5565555311     112223456666665555444221  112333444445555554321        


Q ss_pred             CCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCe
Q 016612          281 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  360 (386)
Q Consensus       281 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  360 (386)
                         .+++.    ...++.|.++++.+.+.....++.+.+...|+.+++.                            .++
T Consensus       381 ---~~~~v----~~vr~~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~----------------------------~~~  425 (457)
T 3tfu_A          381 ---ALPAV----TDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPF----------------------------RNL  425 (457)
T ss_dssp             ---GSTTE----EEEEECSSCEEEEESSCCCHHHHHHHHHHTTEECCCB----------------------------TTE
T ss_pred             ---cCCCe----eeeecCCeEEEEEECCcccHHHHHHHHHHCCeEEEec----------------------------CCE
Confidence               11111    1123467888998855433567777777778876542                            234


Q ss_pred             EEEEec----cCChHHHHHHHHHHHhcC
Q 016612          361 VRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       361 iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      +|++++    .++++++++.|++++++.
T Consensus       426 lRi~p~~~~t~eei~~~l~~L~~~l~~~  453 (457)
T 3tfu_A          426 VYAMPPYICTPAEITQITSAMVEVARLV  453 (457)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999854    488889999999888765

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.7e-20  Score=180.11  Aligned_cols=292  Identities=15%  Similarity=0.133  Sum_probs=190.4

Q ss_pred             CCccccCC-CC-chHHHHHHHHHhhcCCC------------ceEEeCcHHHHHH-HHHHhc-------------------
Q 016612           45 GPYDYTRS-GN-PTRDALESLLAKLDKAD------------RALCFTSGMAALA-AVTHLL-------------------   90 (386)
Q Consensus        45 ~~~~y~~~-g~-~~~~~l~~~l~~~~g~~------------~~i~~~~gt~al~-~~~~~~-------------------   90 (386)
                      ....|... +. .+.+++.+++++++|.+            ..+++++||+++. ++++..                   
T Consensus       106 ~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~  185 (481)
T 4e1o_A          106 LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL  185 (481)
T ss_dssp             CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred             ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccc
Confidence            34445444 32 25667778888888876            3478888997754 444332                   


Q ss_pred             CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhCCC------ceEEEEeCCCCCCcccccHH
Q 016612           91 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIR  159 (386)
Q Consensus        91 ~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~~~------~~~v~~~~~~nptG~~~~l~  159 (386)
                      .+++.|++++..|.++...    +...|.+++.++.+     |+++|+++++++      +.+|+++.++|++|.+.|++
T Consensus       186 ~~~~~v~~s~~~H~s~~~~----~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~  261 (481)
T 4e1o_A          186 NARLVAYASDQAHSSVEKA----GLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLS  261 (481)
T ss_dssp             HTTEEEEEETTSCHHHHHH----HHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred             cCCeEEEEcCcchHHHHHH----HHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHH
Confidence            2577899999999988644    34578899999864     899999998743      67888899999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCCCCCCccCC----CCC---CccEEEeccccccccCCCceEEEEEEcChhHHHH-HH----Hh
Q 016612          160 KIAEMAHAHGALLLVDNSIMSPVLSRP----LEL---GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LY----FL  227 (386)
Q Consensus       160 ~i~~la~~~~~~li~D~a~~~~~~~~~----~~~---~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~-~~----~~  227 (386)
                      +|.++|++||+++++|++|+.+....+    ...   .+|.++.++||++++|.|  +|+++++++..... +.    .+
T Consensus       262 ~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl  339 (481)
T 4e1o_A          262 ELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD--CTGFWVKDKYKLQQTFSVNPIYL  339 (481)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESBHHHHHTTTCCCCGGG
T ss_pred             HHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc--eEEEEEeCHHHHHHHhcCCchhc
Confidence            999999999999999999986643211    112   359999999999998887  67777777654321 10    00


Q ss_pred             hhh--------------cCCCCChhhHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhh
Q 016612          228 QNA--------------EGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  291 (386)
Q Consensus       228 ~~~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~  291 (386)
                      ...              .+........++.+.  +.+.+..+.++..++++.+.+.+++.+.+              +++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~--------------~~~  405 (481)
T 4e1o_A          340 RHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSF--------------EIP  405 (481)
T ss_dssp             CCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTE--------------ECC
T ss_pred             cCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--------------EEe
Confidence            000              011112233343333  22334556666777777888887765422              111


Q ss_pred             hhccCCCCceEEEEeCC-HHhHHHHHhhcCcceecc-CCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-c-
Q 016612          292 YSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITV-SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-I-  367 (386)
Q Consensus       292 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~-~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-~-  367 (386)
                      .   +...++++|.+.+ .....++.+.+...|... .++..                        .+..++|++++ . 
T Consensus       406 ~---~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~------------------------~g~~~lR~~~~~~~  458 (481)
T 4e1o_A          406 A---KRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATI------------------------QDKLIIRFTVTSQF  458 (481)
T ss_dssp             S---CCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEE------------------------TTEEEEEEECCCTT
T ss_pred             c---CCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEE------------------------CCEEEEEEEeCCCC
Confidence            0   1235788988843 445667777776666432 11110                        02356999975 2 


Q ss_pred             ---CChHHHHHHHHHHHhc
Q 016612          368 ---EDVNDLISDLDKALRT  383 (386)
Q Consensus       368 ---~~~~~~i~~l~~~l~~  383 (386)
                         ++++++++.|++.+++
T Consensus       459 tt~~di~~~~~~i~~~~~~  477 (481)
T 4e1o_A          459 TTRDDILRDWNLIRDAATL  477 (481)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence               5677777777776654

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.86  E-value=1.9e-20  Score=179.13  Aligned_cols=324  Identities=12%  Similarity=0.050  Sum_probs=193.6

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC-C-CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHH
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDKA--DRALCFTSGMAALAA   85 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~   85 (386)
                      +.+++..+  ...+|..+|.+.++......    ...+.|... + .+.+.+++++++++++.  +++++++||++|+.+
T Consensus        52 ~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~----~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~  127 (460)
T 3gju_A           52 KSIDAFAGLYCVNVGYGRQKIADAIATQAK----NLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANET  127 (460)
T ss_dssp             EEEETTHHHHTCTTCBCCHHHHHHHHHHHH----HHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHH
T ss_pred             EEEECCcchhhccCCCCCHHHHHHHHHHHH----hccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHH
Confidence            34555522  24577666665553221111    112223333 2 35789999999998754  467888889999874


Q ss_pred             HH-Hhc--------CCCCEEEecCCCCCcHHHHHhhh---------cccCCcEEEEeC--C----CC------------H
Q 016612           86 VT-HLL--------GTGEEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVN--T----CD------------L  129 (386)
Q Consensus        86 ~~-~~~--------~~g~~Vlv~~~~~~~~~~~~~~~---------~~~~g~~~~~v~--~----~d------------~  129 (386)
                      ++ .++        .+++.|++.++.|+++.......         .......+..++  .    +|            +
T Consensus       128 al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~  207 (460)
T 3gju_A          128 NIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCA  207 (460)
T ss_dssp             HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHH
Confidence            43 343        35689999999997764322111         111112233333  2    22            6


Q ss_pred             HHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCccC-----CCCCCccEEE
Q 016612          130 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVM  195 (386)
Q Consensus       130 ~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~~-----~~~~~~di~~  195 (386)
                      ++|++++.    +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+ .+....     ......|++ 
T Consensus       208 ~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~-  286 (460)
T 3gju_A          208 DKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI-  286 (460)
T ss_dssp             HHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE-
T ss_pred             HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee-
Confidence            88888875    57889999999999888765    9999999999999999999987 322211     112345666 


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHh-------hhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHH
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAE  266 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~  266 (386)
                       ++||.+++ +++++|+++++ +++.+.+...       ......+.++..++++...++.+.  ...++..++.+.+.+
T Consensus       287 -t~sK~l~g-G~~~lg~v~~~-~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~  363 (460)
T 3gju_A          287 -TIAKGLTS-AYAPLSGVIVA-DRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRA  363 (460)
T ss_dssp             -EECGGGTT-TSSCCEEEEEE-HHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             -eeehhhcC-CCCCeEEEEEC-HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence             56899865 22689999987 4565555321       222234556666666655554321  123334444444555


Q ss_pred             HHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----------HhHHHHHhhcCcceeccCCCCccccc
Q 016612          267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLI  335 (386)
Q Consensus       267 ~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~l~~~gi~~~~G~~~~~~  335 (386)
                      .+.+.          +..++..    ...++.+.++++.+...           ....++.+.+...|+.+.+++     
T Consensus       364 ~l~~~----------l~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----  424 (460)
T 3gju_A          364 ELAKA----------VGGHKNV----GEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP-----  424 (460)
T ss_dssp             HHHHH----------HTTSTTE----EEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS-----
T ss_pred             HHHHH----------HhcCCCe----EEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC-----
Confidence            44321          1111111    11234577888877421           125567777777788665432     


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          336 SMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                           .++++||+++    .++++++++.|++++++
T Consensus       425 ---------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  455 (460)
T 3gju_A          425 ---------------------QGDILGFAPPLCLTREQADIVVSKTADAVKS  455 (460)
T ss_dssp             ---------------------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                                 1356999954    48888888888888865

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.86  E-value=1.4e-21  Score=186.25  Aligned_cols=319  Identities=14%  Similarity=0.124  Sum_probs=184.8

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC-C-CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHH
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDKA--DRALCFTSGMAALAA   85 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~   85 (386)
                      +.+++..+  ..++|..+|.+.++......    ...+ |... + .+.+.+++++++++++.  +++++++||++|+.+
T Consensus        45 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~----~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~  119 (448)
T 3dod_A           45 EYYDGFSSVWLNVHGHRKKELDDAIKKQLG----KIAH-STLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEI  119 (448)
T ss_dssp             EEEETTHHHHTCSSCBSCHHHHHHHHHHHT----TCSC-CCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHH
T ss_pred             EEEECCcchhhccCCCCCHHHHHHHHHHHH----hccC-ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHH
Confidence            34555522  55678776666554222111    1111 2222 3 35789999999999853  478888889999874


Q ss_pred             -HHHhcC----CC----CEEEecCCCCCcHHHHHhhhcc---------cCCcEEEEeCCC----------------CHHH
Q 016612           86 -VTHLLG----TG----EEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTC----------------DLDE  131 (386)
Q Consensus        86 -~~~~~~----~g----~~Vlv~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~----------------d~~~  131 (386)
                       +..+..    +|    |+|++.++.|+++.........         .....+..++..                |+++
T Consensus       120 al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  199 (448)
T 3dod_A          120 ALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRE  199 (448)
T ss_dssp             HHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHH
Confidence             433433    44    9999999999776422111100         001123334433                2788


Q ss_pred             HHhhhC---CCceEEEEeCCC-CCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEec
Q 016612          132 VASAIG---PWTKLVWVESPT-NPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHS  197 (386)
Q Consensus       132 l~~~~~---~~~~~v~~~~~~-nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S  197 (386)
                      |++.++   +++++|++++++ |++|.+.+    +++|.++|++||++||+||+|+. +...     .......|++  +
T Consensus       200 le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t  277 (448)
T 3dod_A          200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM--A  277 (448)
T ss_dssp             HHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--E
T ss_pred             HHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEE--E
Confidence            998886   567889899888 99998875    99999999999999999999872 2211     1112345665  5


Q ss_pred             cccccccCCC-ceEEEEEEcChhHHHHHHH-------hhhhcCCCCChhhHHHHHhcCCcHH--HHHHHHHHHHHHHHHH
Q 016612          198 ATKFIAGHSD-VMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEF  267 (386)
Q Consensus       198 ~sK~~~g~~g-~~~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~  267 (386)
                      +||.+++  | +++|+++++ +++.+.+..       .........++..+.++...++.+.  ...++..++.+.+.+.
T Consensus       278 ~sK~l~~--G~~~ig~v~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~  354 (448)
T 3dod_A          278 AGKGITG--GYLPIAVTFAT-EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFL  354 (448)
T ss_dssp             ECGGGGT--TSSCCEEEEEE-HHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ecccccC--CcCceEEEEEC-HHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            6899954  6 589999987 456554432       2222233456666666655554322  1233444455555555


Q ss_pred             HhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHH-----------hHHHHHhhcCcceeccCCCCcccccc
Q 016612          268 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-----------LSKHVVETTKYFSITVSFGSVKSLIS  336 (386)
Q Consensus       268 l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~gi~~~~G~~~~~~~  336 (386)
                      +.+..           .++..    ...++.|.++++.+....           ....+.+.+...|+.+.+++      
T Consensus       355 l~~l~-----------~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------  413 (448)
T 3dod_A          355 LQDLH-----------ALPHV----GDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLG------  413 (448)
T ss_dssp             HHHHT-----------TSTTE----EEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEET------
T ss_pred             HHHHh-----------cCCCe----EEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccC------
Confidence            54311           11111    112345778888874321           13566777777788665431      


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          337 MPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       337 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                            +++|++++    .++++++++.|++++++
T Consensus       414 ----------------------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  442 (448)
T 3dod_A          414 ----------------------DVIAFLPPLASTAEELSEMVAIMKQAIHE  442 (448)
T ss_dssp             ----------------------TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                                  34999754    47888888888888765

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.85  E-value=3.7e-21  Score=182.69  Aligned_cols=281  Identities=14%  Similarity=0.111  Sum_probs=178.4

Q ss_pred             CchHHHHHHHHHhhc-CCCceEEeCcHHHHHHHHH-Hhc--CCCCEEEecCCCCCcHHHHHhhhcccCC-----------
Q 016612           54 NPTRDALESLLAKLD-KADRALCFTSGMAALAAVT-HLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTG-----------  118 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~-g~~~~i~~~~gt~al~~~~-~~~--~~g~~Vlv~~~~~~~~~~~~~~~~~~~g-----------  118 (386)
                      .+...++++.+++++ +.++.++++||++++..++ .+.  .++++|++.++.|+++..   ......|           
T Consensus        94 ~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~---~~~~~~g~~~~~~~~~~~  170 (434)
T 3l44_A           94 TALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSD---LVLVAAGSGPSTLGTPDS  170 (434)
T ss_dssp             CHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSG---GGGBC-------CCCBSS
T ss_pred             CHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcH---HHHhhcCCcccccCCCCc
Confidence            356788888999988 4557888888999987443 333  377899999999877531   1111111           


Q ss_pred             --c------EEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCC--
Q 016612          119 --V------VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP--  181 (386)
Q Consensus       119 --~------~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~--  181 (386)
                        .      ++..++..|++++++.++   +++++|++++++|++|.+.+    +++|.++|++||++||+||+|...  
T Consensus       171 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~  250 (434)
T 3l44_A          171 AGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRF  250 (434)
T ss_dssp             TTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTS
T ss_pred             CCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceec
Confidence              1      455666679999998886   56788888888888888887    999999999999999999999732  


Q ss_pred             -Ccc--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh---hhhcCCCCChhhHHHHHhcCCcH--HHH
Q 016612          182 -VLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---QNAEGSGLAPFDCWICLRGVKTM--ALR  253 (386)
Q Consensus       182 -~~~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~  253 (386)
                       ...  .......|++  |+||.++  +|+|+|+++++ +++.+.+...   ......+.++..+.++..+++.+  ...
T Consensus       251 g~~~~~~~~~~~~di~--t~sK~~~--~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~  325 (434)
T 3l44_A          251 MYGGAQDLLGVTPDLT--ALGKVIG--GGLPIGAYGGK-KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGL  325 (434)
T ss_dssp             SSSCHHHHHTCCCSEE--EEEGGGG--TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH
T ss_pred             cccHHHHHcCCCCCee--ehhhhhc--CCcCeeeEEEc-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccH
Confidence             111  1112345655  6789995  46899999886 5555433321   11222345555555554443321  122


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-------------CHHhHHHHHhhcC
Q 016612          254 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTK  320 (386)
Q Consensus       254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~l~  320 (386)
                      .++..++.+.+.+.+++...    ..+..          ...++.+.++++.+.             +.....++.+.+.
T Consensus       326 ~~~~~~~~~~l~~~L~~~~~----~~~~~----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  391 (434)
T 3l44_A          326 YEKLDELGATLEKGILEQAA----KHNID----------ITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML  391 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HTTCC----------EEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----hCCCC----------EEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHH
Confidence            34444555555555543210    00000          011345778888762             2334467777777


Q ss_pred             cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe--ccCChHHHHHHHHHHHhc
Q 016612          321 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       321 ~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--~~~~~~~~i~~l~~~l~~  383 (386)
                      ..|+.++++..                           +.+|+++  +.++++++++.|++++++
T Consensus       392 ~~Gv~v~~~~~---------------------------~~~rl~~~~t~e~i~~~l~~l~~~l~~  429 (434)
T 3l44_A          392 QEGVNLAPSKY---------------------------EAWFLTTEHTKEDIEYTIEAVGRAFAA  429 (434)
T ss_dssp             HTTEECCSSTT---------------------------CCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HCCeEEeecCC---------------------------CcEEEecccCHHHHHHHHHHHHHHHHH
Confidence            78887766532                           2377765  358888999999888864

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.85  E-value=2.8e-20  Score=179.92  Aligned_cols=163  Identities=12%  Similarity=0.053  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHhhcCCC----ceEEeCcHHHHHH-HHHHhc--------CCC-----C-EEEecCCCCCcHHHHHhhhccc
Q 016612           56 TRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLL--------GTG-----E-EIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~----~~i~~~~gt~al~-~~~~~~--------~~g-----~-~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      +.+++.+++++++|.+    ..+++++||+|+. ++.++.        ++|     + .|+++++.|+++...+.. .. 
T Consensus       133 le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~-~g-  210 (504)
T 2okj_A          133 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA-LG-  210 (504)
T ss_dssp             HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHH-cC-
Confidence            3566778889999875    4677788888875 444432        256     6 789999999998755432 21 


Q ss_pred             CCc-EEEEeCCC-----CHHHHHhhhCC------CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc
Q 016612          117 TGV-VVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS  184 (386)
Q Consensus       117 ~g~-~~~~v~~~-----d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~  184 (386)
                      .|. +++.++.+     |+++|++++++      ++++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+...
T Consensus       211 ~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~  290 (504)
T 2okj_A          211 FGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLM  290 (504)
T ss_dssp             SCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred             CCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHh
Confidence            233 77778764     89999998874      5899999999999999999999999999999999999999876543


Q ss_pred             C-----CCC--CCccEEEeccccccccCCCceEEEEEEcChhHHH
Q 016612          185 R-----PLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (386)
Q Consensus       185 ~-----~~~--~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~  222 (386)
                      .     ...  .++|+++.|+||++++|.+  +|+++++++.+.+
T Consensus       291 ~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~--~g~l~~~~~~~~~  333 (504)
T 2okj_A          291 SRKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGILQ  333 (504)
T ss_dssp             CTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTHHH
T ss_pred             CHhhHhhcCCcccCCEEEECchhhcCCCcc--eEEEEEECHHHHH
Confidence            1     111  2689999999999987754  7999998765443

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.85  E-value=2.3e-20  Score=177.43  Aligned_cols=155  Identities=21%  Similarity=0.224  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHhhcCCCc--eEEeCcHHHHHHH-HHH-hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC----
Q 016612           56 TRDALESLLAKLDKADR--ALCFTSGMAALAA-VTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~--~i~~~~gt~al~~-~~~-~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  127 (386)
                      ...++++++++++|.+.  .+++++++.+..+ .++ .+++||+|+++++.|+++...+...++..|++++.++..    
T Consensus       109 ~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~  188 (438)
T 1wyu_A          109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT  188 (438)
T ss_dssp             HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC
T ss_pred             HHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCcc
Confidence            57899999999999873  3555666644332 222 357899999999999999877777777789999999853    


Q ss_pred             CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCC-CCCCCccCCCCCCccEEEecccc-----c
Q 016612          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATK-----F  201 (386)
Q Consensus       128 d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a-~~~~~~~~~~~~~~di~~~S~sK-----~  201 (386)
                      |+++    ++++|++|++++| ||+|.+.|+++|.++|+++|+++++|.. ++.+.+..+...++|++++|.+|     +
T Consensus       189 d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~  263 (438)
T 1wyu_A          189 PLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMG  263 (438)
T ss_dssp             CCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCG
T ss_pred             CHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCcc
Confidence            3333    6778999999999 9999999999999999999999997744 44444433445688999999555     4


Q ss_pred             cccCCCceEEEEEEcCh
Q 016612          202 IAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~  218 (386)
                      ++|| +  +|+++++++
T Consensus       264 ~~Gp-~--~G~l~~~~~  277 (438)
T 1wyu_A          264 FGGP-H--FGFLATKKA  277 (438)
T ss_dssp             GGCS-C--CEEEEECGG
T ss_pred             CCCC-C--eeEEEEcHH
Confidence            5555 3  799998754

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.85  E-value=4.4e-20  Score=178.93  Aligned_cols=160  Identities=20%  Similarity=0.177  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHHHhc-------C-CCC------EEEecCCCCCcHHHHHhhhcccCC
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL-------G-TGE------EIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~~~~-------~-~g~------~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      +.+++++++++++|.+  +.+++++||+|+. ++..+.       + +|+      .|+++++.|+++...+    +..|
T Consensus       149 le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~----~~~g  224 (515)
T 2jis_A          149 MEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGA----AFLG  224 (515)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHH----HHTT
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHH----HHcC
Confidence            4677888999999986  5777788888865 343332       2 575      8999999999887544    3334


Q ss_pred             c---EEEEeCCC-----CHHHHHhhhCC------CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc
Q 016612          119 V---VVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS  184 (386)
Q Consensus       119 ~---~~~~v~~~-----d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~  184 (386)
                      .   +++.++.+     |+++|++++++      ++++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+...
T Consensus       225 ~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~  304 (515)
T 2jis_A          225 LGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLL  304 (515)
T ss_dssp             SCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred             CCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHh
Confidence            4   77888764     89999998864      4899999999999999999999999999999999999999876654


Q ss_pred             CC-----C-CC-CccEEEeccccccccCCCceEEEEEEcCh-hHH
Q 016612          185 RP-----L-EL-GADIVMHSATKFIAGHSDVMAGVLAVKGE-RLA  221 (386)
Q Consensus       185 ~~-----~-~~-~~di~~~S~sK~~~g~~g~~~G~i~~~~~-~~~  221 (386)
                      .+     . .. ++|++++|+||++++|.|  +|+++++++ .+.
T Consensus       305 ~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~~~~~  347 (515)
T 2jis_A          305 SQTHRHLLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDTSNLL  347 (515)
T ss_dssp             CTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCCSCHH
T ss_pred             ChhhHhhcCCCccCCEEEECcccccCCCCC--eeEEEEeChHHHH
Confidence            22     1 22 789999999999987765  799998876 443

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=174.24  Aligned_cols=278  Identities=17%  Similarity=0.141  Sum_probs=177.6

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEe-C-cHHHHHH-HHHHhcCC--CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD--RALCF-T-SGMAALA-AVTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~-~-~gt~al~-~~~~~~~~--g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..+++++.+++++|.+  +.+++ + +||++++ ++..++.+  ||+|++...++.+.  .|...++..|..++.++.+ 
T Consensus        59 ~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~  136 (377)
T 3e77_A           59 IINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLG  136 (377)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCS
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCC
Confidence            5788899999999986  34544 4 5679997 45667754  99998777766554  3457788899888776653 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                          ++++++..+++++++|.+++.+|.||.+.|+     +|+++|+++++|.+++.|..+ +..+++  ++++|.+|++
T Consensus       137 ~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~  209 (377)
T 3e77_A          137 SYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNV  209 (377)
T ss_dssp             SSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTT
T ss_pred             CcCCCCChHHhccCCCccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEeccccc
Confidence                5667777788899999999999999999998     477899999999999998865 333344  6889999999


Q ss_pred             ccCCCceEEEEEEcChhHHH-------HH--HHhh-hhcCCCCCh-hhHHHHHhcCCc------HHHHHHHHHHHHHHHH
Q 016612          203 AGHSDVMAGVLAVKGERLAK-------EL--YFLQ-NAEGSGLAP-FDCWICLRGVKT------MALRVEKQQDNAQKIA  265 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~-------~~--~~~~-~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~l~  265 (386)
                       ||+|  .|+++++++.+.+       .+  .... .....+..+ ...+.+..+++.      +..+.++..+..+.+.
T Consensus       210 -gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~  286 (377)
T 3e77_A          210 -GSAG--VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIY  286 (377)
T ss_dssp             -SCTT--CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             -CCCc--cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence             7888  6888888653211       00  0111 111112222 222222233322      3333444445555555


Q ss_pred             HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc-eEEEEeCC----HHhHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          266 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGS----LALSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       266 ~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~----~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                      +.+++.+.+              .+....+..+++ +++|.+++    .+....+++.+..+|+.+..|..         
T Consensus       287 ~~L~~~~g~--------------~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~---------  343 (377)
T 3e77_A          287 EIIDNSQGF--------------YVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHR---------  343 (377)
T ss_dssp             HHHHTSTTS--------------EECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCT---------
T ss_pred             HHHHhcCCc--------------eecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCC---------
Confidence            666554321              110001112334 58999865    33335677777677887766542         


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  384 (386)
                                      ..+.+|+|+..    ++++.+++.|++.+++.
T Consensus       344 ----------------~~g~iRiS~~~~~t~edId~l~~al~~~~~~~  375 (377)
T 3e77_A          344 ----------------SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH  375 (377)
T ss_dssp             ----------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence                            12349999964    66666666776666543

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.85  E-value=1.5e-20  Score=178.55  Aligned_cols=284  Identities=17%  Similarity=0.174  Sum_probs=180.0

Q ss_pred             CchHHHHHHHHHhhc-CCCceEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcHHHHHhhhc----------ccCCc
Q 016612           54 NPTRDALESLLAKLD-KADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVT----------PKTGV  119 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~-g~~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~~~~~~~~~----------~~~g~  119 (386)
                      .+.+.++++.+++++ +.++.++++||++|+.+++.+   +.+++.|++.++.|+++........          ...|+
T Consensus        95 ~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~  174 (434)
T 2epj_A           95 GEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGV  174 (434)
T ss_dssp             CHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCC
Confidence            357889999999998 677888899999998754433   4566788888888877531100000          11243


Q ss_pred             ------EEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCCCccC-
Q 016612          120 ------VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSR-  185 (386)
Q Consensus       120 ------~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~~~-  185 (386)
                            ++..++..|++++++.++   +++++|++++.+|++|.+.+    +++|.++|++||+++|+||+|+...... 
T Consensus       175 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~  254 (434)
T 2epj_A          175 PEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLE  254 (434)
T ss_dssp             CHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTT
T ss_pred             CCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcc
Confidence                  355666679999998886   47888888888888999887    9999999999999999999998211111 


Q ss_pred             ----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh---hhcCCCCChhhHHHHHhcCCcHHH--HHHH
Q 016612          186 ----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTMAL--RVEK  256 (386)
Q Consensus       186 ----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  256 (386)
                          ......|++  |+||++++  |+++|+++++ +++.+.+....   .......++..++++...++.+..  ..++
T Consensus       255 ~~~~~~~~~~di~--s~sK~l~~--G~~~G~v~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~  329 (434)
T 2epj_A          255 GAQGYFNIEGDII--VLGKIIGG--GFPVGAVAGS-REVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSV  329 (434)
T ss_dssp             HHHHHHTCCCSEE--EEEGGGGT--TSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhhHHhCCCCCee--eecchhcC--Ccceeeeeec-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHH
Confidence                112346765  77899964  6889999987 44544333211   111224555565555554443321  2233


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-------------HHhHHHHHhhcCcce
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------------LALSKHVVETTKYFS  323 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~g  323 (386)
                      ..++.+.+.+.+++...    .. ++.         ...++.+.++++.+.+             .....++.+.+...|
T Consensus       330 ~~~~~~~l~~~L~~~~~----~~-~~~---------~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  395 (434)
T 2epj_A          330 SREAAKALEEAASEVLD----RT-GLP---------YTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRG  395 (434)
T ss_dssp             HHHHHHHHHHHHHHHHH----HH-TCC---------EEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHh----hC-CCc---------EEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCC
Confidence            44444444444443200    00 010         0113357888888854             234567888887889


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe--ccCChHHHHHHHHHHHhc
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--~~~~~~~~i~~l~~~l~~  383 (386)
                      +.+.+|..                           ..+|+++  +.++++++++.|++++++
T Consensus       396 v~v~~~~~---------------------------~~~~~~~~~t~e~i~~~l~~l~~~l~~  430 (434)
T 2epj_A          396 VFIAPSNL---------------------------EAVFTGLPHQGEALEIAVEGLRSSLKT  430 (434)
T ss_dssp             EECCSSTT---------------------------SCEECCTTCSHHHHHHHHHHHHHHHHH
T ss_pred             eEEeccCC---------------------------CcEEEeccCCHHHHHHHHHHHHHHHHH
Confidence            88776542                           1155554  348888888888888764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.84  E-value=2.3e-20  Score=178.80  Aligned_cols=282  Identities=14%  Similarity=0.126  Sum_probs=182.8

Q ss_pred             hHHHHHHHHHhhcCCC-----------ceEEeCcHHHHHH-HHHHhc-------------------CCCCEEEecCCCCC
Q 016612           56 TRDALESLLAKLDKAD-----------RALCFTSGMAALA-AVTHLL-------------------GTGEEIVAGDDLYG  104 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-----------~~i~~~~gt~al~-~~~~~~-------------------~~g~~Vlv~~~~~~  104 (386)
                      +.+++.+++++++|.+           ..+++++||++.. ++.+..                   .+++.|+++...|.
T Consensus       114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~  193 (475)
T 3k40_A          114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHS  193 (475)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCH
T ss_pred             HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchH
Confidence            5666777888988877           3688889997753 443321                   13468999999998


Q ss_pred             cHHHHHhhhcccCCcEEEEeCCC----CHHHHHhhhCCC------ceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEE
Q 016612          105 GTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (386)
Q Consensus       105 ~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~~~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~  174 (386)
                      ++..    .+...|++++.++.+    |+++|+++++++      +.+|+++.++|++|.+.|+++|.++|++||+++++
T Consensus       194 s~~~----~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhv  269 (475)
T 3k40_A          194 SVER----AGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHV  269 (475)
T ss_dssp             HHHH----HHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred             HHHH----HHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEE
Confidence            8864    444678899999874    899999998743      66788899999999999999999999999999999


Q ss_pred             eCCCCCCCccCCC----C---CCccEEEeccccccccCCCceEEEEEEcChhH-HHHHHH----hhhh------------
Q 016612          175 DNSIMSPVLSRPL----E---LGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYF----LQNA------------  230 (386)
Q Consensus       175 D~a~~~~~~~~~~----~---~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~-~~~~~~----~~~~------------  230 (386)
                      |++|+.+....+.    .   ..+|.+++|+||++++|.|  +|+++++++.. .+.+..    +...            
T Consensus       270 D~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~  347 (475)
T 3k40_A          270 DAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD--CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQ  347 (475)
T ss_dssp             ECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESSGGGC--------------------------
T ss_pred             eHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc--eEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCccccc
Confidence            9999866432111    1   1469999999999988877  67888876644 221111    1000            


Q ss_pred             --cCCCCChhhHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe
Q 016612          231 --EGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  306 (386)
Q Consensus       231 --~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~  306 (386)
                        .+........++.+.  +...+..+.++..++++.+.+.+++.+.+              .++.   +...++++|.+
T Consensus       348 ~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~--------------~l~~---~~~~~iv~f~~  410 (475)
T 3k40_A          348 IPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRF--------------ELAA---EINMGLVCFRL  410 (475)
T ss_dssp             -CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTE--------------EESS---CCBTTEEEEEE
T ss_pred             ccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE--------------EEec---CCceEEEEEEe
Confidence              000011222333322  22334555666777777888888776432              1111   11357888888


Q ss_pred             C-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-c----CChHHHHHHHHHH
Q 016612          307 G-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-I----EDVNDLISDLDKA  380 (386)
Q Consensus       307 ~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-~----~~~~~~i~~l~~~  380 (386)
                      . ......++.+.+...|.....         |...              .+..++|++++ .    ++++++++.|++.
T Consensus       411 ~~~~~~~~~l~~~L~~~g~~~~~---------~~~~--------------~g~~~lR~~~~~~~tt~~di~~~~~~i~~~  467 (475)
T 3k40_A          411 KGSNERNEALLKRINGRGHIHLV---------PAKI--------------KDVYFLRMAICSRFTQSEDMEYSWKEVSAA  467 (475)
T ss_dssp             SSCHHHHHHHHHHHHHHTSCBCE---------EEEE--------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhCCcEEEE---------eeEE--------------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            4 344466777777665543211         1000              02456999975 2    5677777777776


Q ss_pred             Hhc
Q 016612          381 LRT  383 (386)
Q Consensus       381 l~~  383 (386)
                      +++
T Consensus       468 ~~~  470 (475)
T 3k40_A          468 ADE  470 (475)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.84  E-value=1.1e-20  Score=181.18  Aligned_cols=319  Identities=17%  Similarity=0.166  Sum_probs=194.9

Q ss_pred             eeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcC--CCceEEeCcHHHHHHHHH
Q 016612           13 LMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVT   87 (386)
Q Consensus        13 ~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g--~~~~i~~~~gt~al~~~~   87 (386)
                      .+++..+  ...+|..+|.+.++......    ...+.+.-. ..+.+.+++++++++++  .+.+++++||++|+..++
T Consensus        56 ylD~~s~~~~~~lGh~~p~v~~A~~~~l~----~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Ai  131 (476)
T 3i5t_A           56 LIDGPAGMWCAQVGYGRREIVDAMAHQAM----VLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSAL  131 (476)
T ss_dssp             EEETTHHHHTCTTCBCCHHHHHHHHHHHH----HCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHH
T ss_pred             EEECCCchhhccCCCCCHHHHHHHHHHHH----hccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHH
Confidence            4555422  34577777666654222111    112222212 34589999999999985  457888899999987443


Q ss_pred             H-hc--------CCCCEEEecCCCCCcHHHHHhhhcc-----------cCCcEEEEeCC-----C-C--------HHHHH
Q 016612           88 H-LL--------GTGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNT-----C-D--------LDEVA  133 (386)
Q Consensus        88 ~-~~--------~~g~~Vlv~~~~~~~~~~~~~~~~~-----------~~g~~~~~v~~-----~-d--------~~~l~  133 (386)
                      . +.        ..++.|++.++.|+++.........           ..+...+..+.     . +        +++|+
T Consensus       132 k~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le  211 (476)
T 3i5t_A          132 RFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFE  211 (476)
T ss_dssp             HHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHH
Confidence            3 33        3467899999999876432211110           11223333222     1 1        77888


Q ss_pred             hhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----C-CCCCCccEEEecc
Q 016612          134 SAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----R-PLELGADIVMHSA  198 (386)
Q Consensus       134 ~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~-~~~~~~di~~~S~  198 (386)
                      +.+.    +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+. +...     . ......|+++  +
T Consensus       212 ~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~  289 (476)
T 3i5t_A          212 DRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--F  289 (476)
T ss_dssp             HHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--E
T ss_pred             HHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhh--h
Confidence            8875    56889999999999998665    99999999999999999999862 2221     1 2233467774  6


Q ss_pred             ccccccCCC-ceEEEEEEcChhHHHHHHHh-------hhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHH
Q 016612          199 TKFIAGHSD-VMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL  268 (386)
Q Consensus       199 sK~~~g~~g-~~~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l  268 (386)
                      +|.+++  | +++|+++++ +++.+.+...       ......+.++..+++++.+++.+..  ..++..++.+.+.+.+
T Consensus       290 sK~l~~--G~~plg~v~~~-~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L  366 (476)
T 3i5t_A          290 AKGVTS--GYVPLGGLAIS-EAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAAL  366 (476)
T ss_dssp             CGGGGT--TSSCCEEEEEC-HHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             hhhhcC--CCcCeEEEEEC-HHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            899965  6 789999986 5566544332       1223345566666666665543321  2334444555555555


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH-----------HhHHHHHhhcCcceeccCCCCccccccc
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISM  337 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~l~~~gi~~~~G~~~~~~~~  337 (386)
                      ++.           ..++...    ..++.|.++.+.+...           .....+.+.+...|+.+.+.        
T Consensus       367 ~~l-----------~~~~~v~----~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--------  423 (476)
T 3i5t_A          367 ASL-----------RDLPGVA----ETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL--------  423 (476)
T ss_dssp             HTT-----------TTSTTEE----EEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE--------
T ss_pred             HHH-----------hcCCCeE----EEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec--------
Confidence            532           1222211    1245678888887432           13556777777778765431        


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          338 PCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       338 p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                          .+++||++.    .++++++++.|++++++
T Consensus       424 --------------------g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~  453 (476)
T 3i5t_A          424 --------------------GDLCVISPPLIISRAQIDEMVAIMRQAITE  453 (476)
T ss_dssp             --------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                                145999854    48888888888888764

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.84  E-value=1e-20  Score=180.98  Aligned_cols=283  Identities=14%  Similarity=0.126  Sum_probs=176.4

Q ss_pred             CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHH-HHHhcC--------CCCEEEecCCCCCcHHHHHhhhc--------
Q 016612           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAA-VTHLLG--------TGEEIVAGDDLYGGTDRLLSRVT--------  114 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~-~~~~~~--------~g~~Vlv~~~~~~~~~~~~~~~~--------  114 (386)
                      .+.+.+++++++++++.  +++++++||++|+.. +..+++        +++.|++.+|.|+++........        
T Consensus        93 ~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~  172 (459)
T 4a6r_A           93 HPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQ  172 (459)
T ss_dssp             CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC--
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccc
Confidence            45789999999999854  477888889999874 444443        57899999999987643221211        


Q ss_pred             -ccC--CcEEEEeCC----C---C--------HHHHHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHc
Q 016612          115 -PKT--GVVVKRVNT----C---D--------LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAH  168 (386)
Q Consensus       115 -~~~--g~~~~~v~~----~---d--------~~~l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~  168 (386)
                       ...  +...+.++.    .   |        +++|++.+.    +++++|+++++++++|.+.+    +++|.++|++|
T Consensus       173 ~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  252 (459)
T 4a6r_A          173 GDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY  252 (459)
T ss_dssp             -CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT
T ss_pred             cCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc
Confidence             111  223333222    1   2        788888775    46788888888888888776    99999999999


Q ss_pred             CCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHH---HhhhhcCCCCChhh
Q 016612          169 GALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY---FLQNAEGSGLAPFD  239 (386)
Q Consensus       169 ~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~---~~~~~~~~~~~~~~  239 (386)
                      |+++|+||+|+. +....     ......|++  ++||.+++ +++++|+++++ +++.+.+.   ........+.++..
T Consensus       253 ~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~--t~sK~l~g-g~~~lg~v~~~-~~i~~~~~~~~~~~~~~t~~~~~~~  328 (459)
T 4a6r_A          253 DVLLVADEVICGFGRTGEWFGHQHFGFQPDLF--TAAKGLSS-GYLPIGAVFVG-KRVAEGLIAGGDFNHGFTYSGHPVC  328 (459)
T ss_dssp             TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEC-HHHHHHHHHHCTTHHHHHHCSCHHH
T ss_pred             CCEEEEeccccCCCcccccchHhhcCCCCCee--ehhhhhcC-CCCCccceeeC-HHHHHHhhcCCCcccCCCCCCCHHH
Confidence            999999999862 22211     112345766  46899854 44789999986 55666554   22222223455666


Q ss_pred             HHHHHhcCCcHH--HHHHHHH-HHHHHHHHHH-hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-------
Q 016612          240 CWICLRGVKTMA--LRVEKQQ-DNAQKIAEFL-ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------  308 (386)
Q Consensus       240 ~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~l-~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------  308 (386)
                      ++++...++.+.  ...++.. ++.+.+.+.+ +...           .++..    ...++.|.++.+.+..       
T Consensus       329 ~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----------~~~~~----~~~~~~g~~~~~~~~~~~~~~~~  393 (459)
T 4a6r_A          329 AAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFS-----------RFEHV----DDVRGVGMVQAFTLVKNKAKREL  393 (459)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHT-----------TCTTE----EEEEEETTEEEEEECSBTTTTBC
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-----------cCCCe----EEEEEEEEEEEEEEecCcccccc
Confidence            666555554321  1123333 4444555555 2211           11111    1113457788887732       


Q ss_pred             ----HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHH
Q 016612          309 ----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKA  380 (386)
Q Consensus       309 ----~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~  380 (386)
                          ......+.+.+...|+.+.+++                            +++||+++    .++++++++.|+++
T Consensus       394 ~~~~~~~~~~~~~~l~~~Gv~v~~~g----------------------------~~iRi~~~~~~t~e~i~~~l~~l~~~  445 (459)
T 4a6r_A          394 FPDFGEIGTLCRDIFFRNNLIMRACG----------------------------DHIVSAPPLVMTRAEVDEMLAVAERC  445 (459)
T ss_dssp             CSSTTHHHHHHHHHHHHTTEECEEET----------------------------TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHCCeEEecCC----------------------------CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                1225667777777788665422                            34999954    47888888888888


Q ss_pred             Hhc
Q 016612          381 LRT  383 (386)
Q Consensus       381 l~~  383 (386)
                      +++
T Consensus       446 l~~  448 (459)
T 4a6r_A          446 LEE  448 (459)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.84  E-value=6.4e-21  Score=180.68  Aligned_cols=285  Identities=14%  Similarity=0.130  Sum_probs=176.1

Q ss_pred             CCchHHHHHHHHHhhcC-CCceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhh----------cccCC
Q 016612           53 GNPTRDALESLLAKLDK-ADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRV----------TPKTG  118 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g-~~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~----------~~~~g  118 (386)
                      ..+.+.+++++++++++ .++.++++||++++.+++.   ....+++|++.++.|++........          ....+
T Consensus        90 ~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  169 (427)
T 3fq8_A           90 PCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPG  169 (427)
T ss_dssp             CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSS
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCC
Confidence            34578999999999885 4578888889999874442   2344578998888887642110000          00111


Q ss_pred             c------EEEEeCCCCHHHHHhhhCC---CceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCC---C
Q 016612          119 V------VVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP---V  182 (386)
Q Consensus       119 ~------~~~~v~~~d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~---~  182 (386)
                      .      .+..++..|++++++.+++   ++++|++++++|++|.+.+    +++|.++|++||++||+||+|+.-   .
T Consensus       170 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~  249 (427)
T 3fq8_A          170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY  249 (427)
T ss_dssp             SCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT
T ss_pred             CCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCc
Confidence            1      2555666699999998863   7889999999999999988    999999999999999999999721   1


Q ss_pred             cc--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh---hhcCCCCChhhHHHHHhcCCcH--HHHHH
Q 016612          183 LS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTM--ALRVE  255 (386)
Q Consensus       183 ~~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~  255 (386)
                      ..  .......|++  |+||+++  +|+|+|+++++ +++.+.+....   .......++..++++...++.+  ....+
T Consensus       250 ~~~~~~~~~~~di~--t~sK~~~--~G~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~  324 (427)
T 3fq8_A          250 GGVQEKFGVTPDLT--TLGKIIG--GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYE  324 (427)
T ss_dssp             THHHHHTTCCCSEE--EECGGGG--TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             chhhHhcCCCCChh--hhhhhhh--CCcceEEEEEc-HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHH
Confidence            11  1122345654  6789996  37899999886 55554333211   1112234565555555443211  22234


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-------------HHhHHHHHhhcCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------------LALSKHVVETTKYF  322 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~  322 (386)
                      +..++.+.+.+.+++...    .. .+.         ...++.+.++++.+..             .....++.+.+...
T Consensus       325 ~~~~~~~~~~~~l~~~~~----~~-~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  390 (427)
T 3fq8_A          325 YLDQITKRLSDGLLAIAQ----ET-GHA---------ACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ  390 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HT-TCC---------CEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH----hC-CCC---------eEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC
Confidence            445555555555543210    00 000         0113356777777632             22345677777777


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe--ccCChHHHHHHHHHHHhc
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--~~~~~~~~i~~l~~~l~~  383 (386)
                      |+.+.++..                           ..+|++.  +.++++++++.|++++++
T Consensus       391 Gi~v~~~~~---------------------------~r~~~~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          391 GIYLAPSQF---------------------------EAGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             TEECCSSTT---------------------------SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEecCCC---------------------------CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence            887766542                           1144443  348888999999888865

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.84  E-value=1.8e-19  Score=172.65  Aligned_cols=292  Identities=15%  Similarity=0.108  Sum_probs=175.3

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcC----CCCE---EEecCCCCCcHHHHHhhhcccCCcEEEEeCC
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG----TGEE---IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~----~g~~---Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~  126 (386)
                      +...++++.++++++.++.++++||++|+. ++..+++    +||+   |+++.+.|..+.    ..+...|.+++.++.
T Consensus        76 ~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~----~~~~~~g~~~~~~~~  151 (467)
T 1ax4_A           76 RNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTA----AHVELNGCKAINIVT  151 (467)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHH----HHHHHTTCEEEECBC
T ss_pred             ccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhh----HHHhccCCceecccc
Confidence            467788999999999888889999999987 4555677    9998   998855555544    233455666665421


Q ss_pred             ---------------CCHHHHHhhhCC----CceEEEEeCCCCCC-ccccc---HHHHHHHHHHcCCEEEEeCCCCC---
Q 016612          127 ---------------CDLDEVASAIGP----WTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMS---  180 (386)
Q Consensus       127 ---------------~d~~~l~~~~~~----~~~~v~~~~~~npt-G~~~~---l~~i~~la~~~~~~li~D~a~~~---  180 (386)
                                     .|+++|++++++    ++++|++++|+||+ |.+.+   +++|.++|++||++||+|+++..   
T Consensus       152 ~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~  231 (467)
T 1ax4_A          152 EKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA  231 (467)
T ss_dssp             GGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH
T ss_pred             cccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcc
Confidence                           278999998873    78999999999999 77754   78999999999999999998654   


Q ss_pred             --------CCccC-CCC------CCccEEEeccccccccCCCceEEEEEEcCh-hHHHHHHHhhhh-cC---C-CCChhh
Q 016612          181 --------PVLSR-PLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELYFLQNA-EG---S-GLAPFD  239 (386)
Q Consensus       181 --------~~~~~-~~~------~~~di~~~S~sK~~~g~~g~~~G~i~~~~~-~~~~~~~~~~~~-~~---~-~~~~~~  239 (386)
                              +.... ...      ...|++++|+||+++.+.   +|+++++++ ++.+.+...... .+   . ..+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~---Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~  308 (467)
T 1ax4_A          232 YFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRD  308 (467)
T ss_dssp             HHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHH
T ss_pred             hhccccccccCCCchhhhhhhhccccceEEEeccccCCCCc---ceEEEeCCHHHHHHHHHhhccccccccccCCccchH
Confidence                    12111 111      236888999999985432   588887745 565554433221 11   1 112111


Q ss_pred             HHH---HHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE-------eCC-
Q 016612          240 CWI---CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-------TGS-  308 (386)
Q Consensus       240 ~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-------~~~-  308 (386)
                      ...   .+..... ..+..+..++.+.+.+.|++. .        ++-.        . +..+.++++.       +.. 
T Consensus       309 ~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~-~--------~~~~--------~-~~~~~~~~~~~~~~~~~~~~~  369 (467)
T 1ax4_A          309 MAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLREA-G--------IPIQ--------Y-PTGGHAVFVDCKKLVPQIPGD  369 (467)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHT-T--------CCBC--------S-SCCSSEEEEESTTTCTTSCGG
T ss_pred             HHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhC-C--------CCcc--------c-CCCceEEEEehhhhccccccC
Confidence            111   1111111 123334445666677777652 1        1100        0 1134556666       321 


Q ss_pred             HHhHHHHHhhc-CcceeccCC-CCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc-----CChHHHHHHHHHHH
Q 016612          309 LALSKHVVETT-KYFSITVSF-GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-----EDVNDLISDLDKAL  381 (386)
Q Consensus       309 ~~~~~~l~~~l-~~~gi~~~~-G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-----~~~~~~i~~l~~~l  381 (386)
                      ......+.+.+ ...|+.+.+ |....-. .|..    ...      .....+++|+|++.     ++++++++.|++++
T Consensus       370 ~~~~~~l~~~L~~~~gv~v~~~g~~~~~~-~~~~----g~~------~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~  438 (467)
T 1ax4_A          370 QFPAQAVINALYLESGVRAVEIGSFLLGR-DPAT----GEQ------KHADMEFMRLTIARRVYTNDHMDYIADALIGLK  438 (467)
T ss_dssp             GCHHHHHHHHHHHHHCEECEEESHHHHCB-CTTT----CSB------CCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTH
T ss_pred             CCCHHHHHHHHHHhcCceeeecCcccccc-cccc----ccc------cccccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence            11356677777 777888776 4321000 0000    000      00024789999872     55666666666655


Q ss_pred             hc
Q 016612          382 RT  383 (386)
Q Consensus       382 ~~  383 (386)
                      ++
T Consensus       439 ~~  440 (467)
T 1ax4_A          439 EK  440 (467)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.84  E-value=1.9e-20  Score=177.49  Aligned_cols=282  Identities=15%  Similarity=0.109  Sum_probs=179.9

Q ss_pred             CchHHHHHHHHHhhc-CCCceEEeCcHHHHHHHHH-Hhc--CCCCEEEecCCCCCcHHHHHhhhcccCC-----------
Q 016612           54 NPTRDALESLLAKLD-KADRALCFTSGMAALAAVT-HLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTG-----------  118 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~-g~~~~i~~~~gt~al~~~~-~~~--~~g~~Vlv~~~~~~~~~~~~~~~~~~~g-----------  118 (386)
                      .+...++++.+++++ +.++.++++||++++..++ .+.  .++++|++.++.|++...   ......|           
T Consensus        92 ~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~---~~~~~~g~~~~~~~~~~~  168 (429)
T 3k28_A           92 TEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGD---SLLIKAGSGVATLGLPDS  168 (429)
T ss_dssp             CHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCG---GGCSSCCTTC-----CCC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcH---HHHHhcCCcccccCCCCc
Confidence            356788888999887 5567888889999987443 333  367889998888876531   1111111           


Q ss_pred             --------cEEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCCCc
Q 016612          119 --------VVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVL  183 (386)
Q Consensus       119 --------~~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~  183 (386)
                              .++..++..|++++++.+.   +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|..-..
T Consensus       169 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~  248 (429)
T 3k28_A          169 PGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRV  248 (429)
T ss_dssp             TTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred             CCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence                    1345556668999998886   56788888888888888887    99999999999999999999963211


Q ss_pred             c-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh---hhcCCCCChhhHHHHHhcCCcH-HHHH
Q 016612          184 S-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTM-ALRV  254 (386)
Q Consensus       184 ~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~  254 (386)
                      .     .......|++  ++||.+++  |+++|+++++ +++.+.+....   .....+.++..++++..+++.. ....
T Consensus       249 g~~~~~~~~~~~~di~--t~sK~~~~--G~~iG~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~  323 (429)
T 3k28_A          249 AYNCGQGYYGVTPDLT--CLGKVIGG--GLPVGAYGGK-AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESY  323 (429)
T ss_dssp             STTHHHHHHTCCCSEE--EECGGGGT--TSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHH
T ss_pred             CcchHHHHhCCCCcee--hhhhhhcC--CCCeEEEEEc-HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            0     0112235665  57899953  6899999986 44554332211   1122345555555554443311 3444


Q ss_pred             HHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-------------CHHhHHHHHhhcCc
Q 016612          255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTKY  321 (386)
Q Consensus       255 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~l~~  321 (386)
                      ++..++.+.+.+.|++...    ..+...          ..++.+.++++.+.             +.....++.+.+..
T Consensus       324 ~~~~~~~~~l~~~L~~~~~----~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  389 (429)
T 3k28_A          324 VEFERKAEMLEAGLRKAAE----KHGIPH----------HINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE  389 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HTTCCC----------EEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh----hCCCCE----------EEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH
Confidence            5556666666666654210    001111          11345677787762             22335677777777


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe--ccCChHHHHHHHHHHHhcC
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--~~~~~~~~i~~l~~~l~~~  384 (386)
                      .|+.+++++.                           +.+|+++  +.++++++++.|++++++.
T Consensus       390 ~Gv~v~~~~~---------------------------~~~r~~~~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          390 QGVFLPPSQF---------------------------EGLFLSTVHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             TTEECCSSTT---------------------------SCBCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             CCeEEecCCC---------------------------CCEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence            8887766431                           2366665  3588999999999998765

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.83  E-value=1.6e-20  Score=178.08  Aligned_cols=284  Identities=14%  Similarity=0.133  Sum_probs=174.2

Q ss_pred             CchHHHHHHHHHhhcC-CCceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHh----------hhcccCC-
Q 016612           54 NPTRDALESLLAKLDK-ADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLS----------RVTPKTG-  118 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~g-~~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~----------~~~~~~g-  118 (386)
                      .+...++++.++++++ .++.++++||++++..++.   ...+++.|++.++.|++......          ......+ 
T Consensus        92 ~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~  171 (429)
T 4e77_A           92 TEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGV  171 (429)
T ss_dssp             CHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTS
T ss_pred             CHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCC
Confidence            3578889999999884 5578888999999874433   23466788988888877642100          0000111 


Q ss_pred             -----cEEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCC---CCCc
Q 016612          119 -----VVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM---SPVL  183 (386)
Q Consensus       119 -----~~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~---~~~~  183 (386)
                           ..+..++..|++++++.++   +++++|++++.++++|.+.+    +++|.++|++||++||+||+|+   .+..
T Consensus       172 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~  251 (429)
T 4e77_A          172 PTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALA  251 (429)
T ss_dssp             CGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTT
T ss_pred             CCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcc
Confidence                 2455566679999998886   46777777777777777777    9999999999999999999997   2221


Q ss_pred             c--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh---hhcCCCCChhhHHHHHhcCCcH--HHHHHH
Q 016612          184 S--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTM--ALRVEK  256 (386)
Q Consensus       184 ~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  256 (386)
                      .  .......|++  |+||.++  +|+++|+++++ +++.+.+....   .......++..++++..+++.+  ....++
T Consensus       252 ~~~~~~~~~pdi~--t~sK~~~--~G~~~G~~~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~  326 (429)
T 4e77_A          252 GAQDYYHVIPDLT--CLGKIIG--GGMPVGAFGGR-REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYET  326 (429)
T ss_dssp             CHHHHTTCCCSEE--EEEGGGG--TTSCCEEEEEC-HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHH
T ss_pred             hHHHhcCCCCCee--eeccccc--CCCCeEEEEEC-HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            1  1122345665  7789996  36889999986 44554333211   1222345666665555444321  222344


Q ss_pred             HHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH--------------HhHHHHHhhcCcc
Q 016612          257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------------ALSKHVVETTKYF  322 (386)
Q Consensus       257 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~l~~~  322 (386)
                      ..++.+.+.+.+++...    .. ++.         ...++.+.++++.+.+.              ....++.+.+...
T Consensus       327 ~~~~~~~l~~~L~~~~~----~~-~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  392 (429)
T 4e77_A          327 LTELTDSLATGLRHAAK----EE-NIP---------LVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE  392 (429)
T ss_dssp             HHHHHHHHHHHHHHHHH----HT-TCC---------CEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH----hC-CCc---------eEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC
Confidence            44555555555543210    00 000         01134577888887432              3346777788778


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe--ccCChHHHHHHHHHHHhc
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--~~~~~~~~i~~l~~~l~~  383 (386)
                      |+.++++..                           ..+|++.  +.++++++++.|++++++
T Consensus       393 Gi~v~~~~~---------------------------~~~~~~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          393 GVYLAPSAF---------------------------EAGFMSLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             TEECCSSTT---------------------------SCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             CeEEeecCC---------------------------CCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence            887776542                           1155543  358888999999988865

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.83  E-value=1e-20  Score=181.11  Aligned_cols=321  Identities=16%  Similarity=0.099  Sum_probs=195.2

Q ss_pred             eeeccCCC--CCCCCCcccceeeeeeeecCCCCCCCCccccCC--CCchHHHHHHHHHhhcCC--CceEEeCcHHHHHHH
Q 016612           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDKA--DRALCFTSGMAALAA   85 (386)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~   85 (386)
                      +.+++..+  ...+|..+|.+.++......    ...+.|...  ..+.+.++++.++++++.  +++++++||++|+.+
T Consensus        56 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~----~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~  131 (472)
T 3hmu_A           56 EILDAMAGLWCVNIGYGRDELAEVAARQMR----ELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDT  131 (472)
T ss_dssp             EEECTTHHHHTCTTCBCCHHHHHHHHHHHH----HCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHH
T ss_pred             EEEECCCchhhccCCCCCHHHHHHHHHHHH----hccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Confidence            45565522  45588777776654222111    112123322  345788999999999864  467888899999874


Q ss_pred             HHH-hcC--------CCCEEEecCCCCCcHHHHHhhhc---------c-cCCcEEEEeCC----C---C--------HHH
Q 016612           86 VTH-LLG--------TGEEIVAGDDLYGGTDRLLSRVT---------P-KTGVVVKRVNT----C---D--------LDE  131 (386)
Q Consensus        86 ~~~-~~~--------~g~~Vlv~~~~~~~~~~~~~~~~---------~-~~g~~~~~v~~----~---d--------~~~  131 (386)
                      ++. +..        +++.|++.++.|+++........         . ..+...+..+.    .   |        +++
T Consensus       132 aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~  211 (472)
T 3hmu_A          132 NIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARE  211 (472)
T ss_dssp             HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHH
Confidence            433 332        46889999999987632211111         1 11233333222    1   1        778


Q ss_pred             HHhhhC----CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEec
Q 016612          132 VASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHS  197 (386)
Q Consensus       132 l~~~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S  197 (386)
                      |++.++    +++++|+++++++++|.+.+    +++|.++|+++|+++|+||+|+. +....     ......|+++  
T Consensus       212 le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--  289 (472)
T 3hmu_A          212 LEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--  289 (472)
T ss_dssp             HHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--
T ss_pred             HHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--
Confidence            888775    56789999999999999886    99999999999999999999872 22211     1123467775  


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHh--hhhcCCCCChhhHHHHHhcCCcHHH--HHHHHH-HHHHHHHHHHhhCC
Q 016612          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQ-DNAQKIAEFLASHP  272 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~l~~~l~~~~  272 (386)
                      ++|.++| +++++|+++++ +++.+.+...  ......+.++..++++..+++.+..  ..++.. ++.+.+.+.|++..
T Consensus       290 ~sK~l~g-g~~plG~v~~~-~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~  367 (472)
T 3hmu_A          290 IAKGLSS-GYAPIGGSIVC-DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT  367 (472)
T ss_dssp             ECGGGTT-TSSCCEEEEEE-HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG
T ss_pred             echhhhc-CCcceEEEEEC-HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899865 34788999986 5566555211  1222334566666666665543321  223334 44455555554321


Q ss_pred             CcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC------------HHhHHHHHhhcCcceeccCCCCcccccccccc
Q 016612          273 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS------------LALSKHVVETTKYFSITVSFGSVKSLISMPCF  340 (386)
Q Consensus       273 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~  340 (386)
                                 .++..    ...++.|.++.+.+..            ......+.+.+...|+.+++++          
T Consensus       368 -----------~~~~v----~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g----------  422 (472)
T 3hmu_A          368 -----------DHPLV----GEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG----------  422 (472)
T ss_dssp             -----------GSTTE----EEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET----------
T ss_pred             -----------cCCCe----EEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC----------
Confidence                       11111    1124567888888742            2235667777777787655321          


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          341 MSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                                        +++||++.    .++++++++.|++++++
T Consensus       423 ------------------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  451 (472)
T 3hmu_A          423 ------------------DRMIISPPLVITPAEIDEMFVRIRKSLDE  451 (472)
T ss_dssp             ------------------TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                              45999954    48888888888888765

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.83  E-value=1.2e-19  Score=181.91  Aligned_cols=208  Identities=13%  Similarity=0.066  Sum_probs=145.4

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ...+.++.+++++|.++.+++++|+ +++. ++.++++|||+|++++++|.++...    +...|++++.++..      
T Consensus       206 ~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~----~~~~G~~~v~v~~~~~~~g~  281 (755)
T 2vyc_A          206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQG----LMLTGAKPVYMVPSRNRYGI  281 (755)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHHCCEEEEECCCBCTTSC
T ss_pred             HHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHH----HHHcCCEEEEEeCCCCcccc
Confidence            5788999999999999888888886 7776 5677899999999999999988654    34568888887642      


Q ss_pred             ---------CHHHHHhhhCC--Cce--------EEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc----
Q 016612          128 ---------DLDEVASAIGP--WTK--------LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (386)
Q Consensus       128 ---------d~~~l~~~~~~--~~~--------~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~----  184 (386)
                               |++++++++++  +++        ++++++| |++|.+.|+++|.++|+++|+++++|++|+.....    
T Consensus       282 ~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~  360 (755)
T 2vyc_A          282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY  360 (755)
T ss_dssp             BCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGG
T ss_pred             ccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCccc
Confidence                     78999988853  444        8999998 78999999999999999999999999999743211    


Q ss_pred             ---CCCCCC--ccE------EEeccccccccCCCceEEEEEEcCh--hH-HHHHHHh-hhhcCCCCChhhHHHHHhc---
Q 016612          185 ---RPLELG--ADI------VMHSATKFIAGHSDVMAGVLAVKGE--RL-AKELYFL-QNAEGSGLAPFDCWICLRG---  246 (386)
Q Consensus       185 ---~~~~~~--~di------~~~S~sK~~~g~~g~~~G~i~~~~~--~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~---  246 (386)
                         .+. .+  +|+      ++.|+||+++|+.+  +|+++++++  .+ ...+... ........+....+.+..+   
T Consensus       361 ~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~~--g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~  437 (755)
T 2vyc_A          361 ADHYAM-RGEPGDHNGPTVFATHSTHKLLNALSQ--ASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSM  437 (755)
T ss_dssp             TTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCTT--CEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHH
T ss_pred             CCcchh-cCCcCCccCCCeEEEECccccccCcCC--eeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence               122 34  565      99999999988765  688887654  22 1222221 1222222222222222111   


Q ss_pred             CCc--HHHHHHHHHHHHHHHHHHHhhC
Q 016612          247 VKT--MALRVEKQQDNAQKIAEFLASH  271 (386)
Q Consensus       247 ~~~--~~~~~~~~~~~~~~l~~~l~~~  271 (386)
                      +..  ...+.++..++++.+.+.+++.
T Consensus       438 l~~~gg~~~~~~~~~~a~~~r~~L~~l  464 (755)
T 2vyc_A          438 MDGNSGLSLTQEVIDEAVDFRQAMARL  464 (755)
T ss_dssp             HSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            211  2345566677777777777653

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.83  E-value=8.8e-20  Score=173.84  Aligned_cols=282  Identities=13%  Similarity=0.081  Sum_probs=173.0

Q ss_pred             CCchHHHHHHHHHhhcC---CCceEEeCcHHHHHHHHHH-h---cC-----------CCCEEEecCCCCCcHHHHHhhhc
Q 016612           53 GNPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTH-L---LG-----------TGEEIVAGDDLYGGTDRLLSRVT  114 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g---~~~~i~~~~gt~al~~~~~-~---~~-----------~g~~Vlv~~~~~~~~~~~~~~~~  114 (386)
                      ..+...++++.++++++   .+++++++||++|+..++. +   ..           +||+|++.+|.|+++........
T Consensus        99 ~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~  178 (449)
T 2cjg_A           99 YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLT  178 (449)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTC
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhc
Confidence            34578899999999985   3467788889999864332 2   22           28999999999987532111111


Q ss_pred             c----------cCCcEEEEeCCCC--H-------------HHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHH
Q 016612          115 P----------KTGVVVKRVNTCD--L-------------DEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIA  162 (386)
Q Consensus       115 ~----------~~g~~~~~v~~~d--~-------------~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~  162 (386)
                      .          .....+..++..|  .             +++++.++   +++++|++++++||+|.+.+    +++|.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~  258 (449)
T 2cjg_A          179 NTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMR  258 (449)
T ss_dssp             CSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHH
T ss_pred             CCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHH
Confidence            1          1112566666555  3             33787773   68899998888899997766    99999


Q ss_pred             HHHHHcCCEEEEeCCCC-CCCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHH-----Hhhhhc
Q 016612          163 EMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-----FLQNAE  231 (386)
Q Consensus       163 ~la~~~~~~li~D~a~~-~~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~-----~~~~~~  231 (386)
                      ++|++||+++|+||+|+ .+....     ......|++  |+||++  +    +|++++++ ++.+.+.     ......
T Consensus       259 ~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~----iG~~~~~~-~~~~~l~~~~~~~~~~~~  329 (449)
T 2cjg_A          259 ELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q----VCGVMAGR-RVDEVADNVFAVPSRLNS  329 (449)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S----SEEEEECG-GGGGSTTCTTTSTTSSCC
T ss_pred             HHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc--c----EEEEEECH-HHhhhhhhcccCCccccc
Confidence            99999999999999997 222211     112345766  578988  2    68888875 4544211     111112


Q ss_pred             CCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH
Q 016612          232 GSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  309 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~  309 (386)
                      ..+.++..+.++..+++.+..  ..++..++.+.+.+.|++...    ..+.   .  .    ...++.+.++.+.+.+.
T Consensus       330 t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~---~--~----~~~~~~g~~~~~~~~~~  396 (449)
T 2cjg_A          330 TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAA----DFPA---V--V----LDPRGRGLMCAFSLPTT  396 (449)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH----HSTT---T--S----EEEEEETTEEEEECSSH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----hCCC---c--e----eeEeeccEEEEEEECCh
Confidence            234456666655555543221  223344444555555543200    0011   0  0    01134578888888765


Q ss_pred             HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                      .....+.+.+...|+.+.+++                           ++++|++++    .++++++++.|++++++
T Consensus       397 ~~~~~~~~~l~~~Gv~v~~~g---------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  447 (449)
T 2cjg_A          397 ADRDELIRQLWQRAVIVLPAG---------------------------ADTVRFRPPLTVSTAEIDAAIAAVRSALPV  447 (449)
T ss_dssp             HHHHHHHHHHHHTTEECEEET---------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCeEEecCC---------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            446677777767787665432                           355999764    47788888888888765

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.82  E-value=1e-19  Score=168.66  Aligned_cols=152  Identities=12%  Similarity=0.029  Sum_probs=117.1

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEe--CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           55 PTRDALESLLAKLDKAD--RALCF--TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~--~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      ...+++++.+++++|.+  +.|++  ++||++++ ++..++++||+|++...++.+.  .|...++..| ++..++.+  
T Consensus        72 ~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~~  148 (386)
T 3qm2_A           72 QVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKIT  148 (386)
T ss_dssp             -CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCcc
Confidence            36788999999999985  34444  57789997 5566889999987655555443  3446677888 77776643  


Q ss_pred             ------CHHHHHhhhCCCceEEEEeCCCCCCccc-ccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccc
Q 016612          128 ------DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSAT  199 (386)
Q Consensus       128 ------d~~~l~~~~~~~~~~v~~~~~~nptG~~-~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~s  199 (386)
                            ++++++..++++|++|.+++.+|.||.+ .|+++|.     +|+++++|.+++.|..+ +..++  +++++|.+
T Consensus       149 ~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~--~~~~~s~h  221 (386)
T 3qm2_A          149 VDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY--GVIYAGAQ  221 (386)
T ss_dssp             ETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC--SEEEEETT
T ss_pred             cCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc--CEEEEecc
Confidence                  4567778888999999999999999996 8888885     79999999999998865 33333  46779999


Q ss_pred             cccccCCCceEEEEEEcChh
Q 016612          200 KFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~  219 (386)
                      |++ ||+|  .|+++++++.
T Consensus       222 K~l-GP~G--~g~l~v~~~~  238 (386)
T 3qm2_A          222 KNI-GPAG--LTLVIVREDL  238 (386)
T ss_dssp             TTT-CCTT--EEEEEEEGGG
T ss_pred             ccc-CCCc--cEEEEECHHH
Confidence            999 6898  7999988653

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.81  E-value=8.7e-19  Score=165.84  Aligned_cols=257  Identities=18%  Similarity=0.143  Sum_probs=160.2

Q ss_pred             CchHHHHHHHHHhhc-CCCceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhhc----------ccCCc
Q 016612           54 NPTRDALESLLAKLD-KADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVT----------PKTGV  119 (386)
Q Consensus        54 ~~~~~~l~~~l~~~~-g~~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~----------~~~g~  119 (386)
                      .+.+.++++.+++++ +.++.++++||++|+.+++.   .+.+++.|++.+|.|+++........          ...|+
T Consensus        91 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~  170 (424)
T 2e7u_A           91 SPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGV  170 (424)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCC
Confidence            357899999999998 56678888899999874433   24456889999999987531110100          11232


Q ss_pred             ------EEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCCCccC-
Q 016612          120 ------VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSR-  185 (386)
Q Consensus       120 ------~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~~~-  185 (386)
                            .+..++..|++++++.++   +++++|++++.++++|.+.+    +++|.++ ++||++||+||+|+.-.... 
T Consensus       171 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~  249 (424)
T 2e7u_A          171 PEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFG  249 (424)
T ss_dssp             CHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTT
T ss_pred             CCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchh
Confidence                  356667779999998886   46777777666666898887    9999999 99999999999997221111 


Q ss_pred             ----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh---hhcCCCCChhhHHHHHhcCCcHHH---HHH
Q 016612          186 ----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTMAL---RVE  255 (386)
Q Consensus       186 ----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~  255 (386)
                          ......|++  |+||++++  |+++|++++++ ++.+.+....   .......++..++++...++.+..   ..+
T Consensus       250 ~~~~~~~~~~di~--s~sK~l~~--G~~~G~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~  324 (424)
T 2e7u_A          250 GATELLGLKPDLV--TLGKILGG--GLPAAAYAGRR-EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYA  324 (424)
T ss_dssp             HHHHHHTCCCSEE--EECGGGGT--TSSCEEEEECH-HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHH
T ss_pred             HHHHHhCCCcchh--hhhhhhhC--CcceEEEEEcH-HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence                112245765  78999963  68899999874 4554333211   111224556666555555543322   333


Q ss_pred             HHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-------------HHhHHHHHhhcCcc
Q 016612          256 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------------LALSKHVVETTKYF  322 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~  322 (386)
                      +..++.+.+.+.+++...    .. ++.         ...++.|.++++.+..             .....++.+.+...
T Consensus       325 ~~~~~~~~l~~~L~~~~~----~~-~~~---------~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  390 (424)
T 2e7u_A          325 YLEDLGARLEAGLKEVLK----EK-GLP---------HTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDR  390 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HT-TCC---------CEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH----hC-CCc---------eEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHC
Confidence            444455555555543210    00 010         0012356788888753             23456777877778


Q ss_pred             eeccCCCC
Q 016612          323 SITVSFGS  330 (386)
Q Consensus       323 gi~~~~G~  330 (386)
                      |+.+.+|.
T Consensus       391 Gv~v~~~~  398 (424)
T 2e7u_A          391 GIYWPPSN  398 (424)
T ss_dssp             TEECCSSS
T ss_pred             CeEEeccC
Confidence            98877654

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.69  E-value=1.5e-21  Score=184.96  Aligned_cols=322  Identities=13%  Similarity=0.085  Sum_probs=194.4

Q ss_pred             eeeccCCCCC--CCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhc-CCCceEEeCcHHHHHHHHHH
Q 016612           12 LLMNFSNEFD--PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTH   88 (386)
Q Consensus        12 ~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~gt~al~~~~~   88 (386)
                      +.+++..+..  .+|..+|.+.++....   +.....+.   ...+...++++.+++++ +.+..++++||++|+..++.
T Consensus       101 ~yiD~~~~~~~~~lGh~~p~V~~Av~~q---~~~~~~~~---~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik  174 (465)
T 2yky_A          101 AYVNFLGEYTAGLFGHSHPVIRAAVERA---LAVGLNLS---TQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALA  174 (465)
Confidence            3455552222  3677677766643222   11111111   13457788999999988 66778889999999875444


Q ss_pred             h---cCCCCEEEecCCCCCcHHHHHhhhcccCCc--EEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCccccc---
Q 016612           89 L---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD---  157 (386)
Q Consensus        89 ~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---  157 (386)
                      +   ...+++|++.++.|++.......-....|+  .+..++..|++++++.++   +++++|+++.+++++|.+.+   
T Consensus       175 ~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~  254 (465)
T 2yky_A          175 TATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERA  254 (465)
Confidence            3   345689999999997753221100012333  445556678999999887   68999999887777998776   


Q ss_pred             -HHHHHHHHHHcCCEEEEeCCCCCCCccCC---C--CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHH-----
Q 016612          158 -IRKIAEMAHAHGALLLVDNSIMSPVLSRP---L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----  226 (386)
Q Consensus       158 -l~~i~~la~~~~~~li~D~a~~~~~~~~~---~--~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~-----  226 (386)
                       +++|.++|+++|+++|+||+|+ ......   .  ....|++  |++|++++  |+++|++++++ ++.+.+..     
T Consensus       255 ~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~--G~piG~v~~~~-~i~~~l~~~~~g~  328 (465)
T 2yky_A          255 FLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGG--GMSFGAFGGRR-DLMERFDPARDGA  328 (465)
Confidence             9999999999999999999998 422111   1  1234554  78999965  68999999874 45554443     


Q ss_pred             hhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe
Q 016612          227 LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  306 (386)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~  306 (386)
                      .......+.++..++++...++.+..  +...++.+.+.+++.+.-.  ..    +...+   +. ...++.|.++++.+
T Consensus       329 ~~~~~T~~~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~--~~----~~~~~---~~-~~v~g~G~~~~i~~  396 (465)
T 2yky_A          329 FAHAGTFNNNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLN--RI----AVENQ---AP-LQFTGLGSLGTIHF  396 (465)
Confidence            11222234455555555555554322  2233444444444433210  00    11111   10 11245678888876


Q ss_pred             CC-------------HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHH
Q 016612          307 GS-------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  373 (386)
Q Consensus       307 ~~-------------~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~  373 (386)
                      .+             .....++.+.+...|+.+.++....                           +-+..+.+++++.
T Consensus       397 ~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~---------------------------~s~~~t~edid~~  449 (465)
T 2yky_A          397 SRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA---------------------------LSLEIADAGRDAF  449 (465)
Confidence            43             1225577788888888766544210                           1123456889999


Q ss_pred             HHHHHHHHhcC
Q 016612          374 ISDLDKALRTG  384 (386)
Q Consensus       374 i~~l~~~l~~~  384 (386)
                      ++.+.++++++
T Consensus       450 l~~l~~~l~~~  460 (465)
T 2yky_A          450 AEALADFIGEQ  460 (465)
Confidence            99998888754

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.79  E-value=2.1e-18  Score=165.20  Aligned_cols=293  Identities=16%  Similarity=0.103  Sum_probs=165.8

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCC-----C----CEEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGT-----G----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~-----g----~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      +...++++.+++++|.++.++++||++|+. ++..++++     |    |+|++. +.|..+...   .....|..+...
T Consensus        74 ~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~---~~~~~~~~~~~~  149 (467)
T 2oqx_A           74 RSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQG---HSQINGCTVRNV  149 (467)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHH---HHHHTTCEEEEC
T ss_pred             chhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccchh---hhhccCcceeec
Confidence            457789999999999888889999998876 55556677     8    988877 444332211   111223333221


Q ss_pred             ------C------C---CCHHHHHhhhC----CCceEEEEeCCCCCC-ccccc---HHHHHHHHHHcCCEEEEeCCCCC-
Q 016612          125 ------N------T---CDLDEVASAIG----PWTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMS-  180 (386)
Q Consensus       125 ------~------~---~d~~~l~~~~~----~~~~~v~~~~~~npt-G~~~~---l~~i~~la~~~~~~li~D~a~~~-  180 (386)
                            +      .   .|+++|+++++    +++++|++++|+||+ |.+.+   +++|.++|++||++||+|++++. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e  229 (467)
T 2oqx_A          150 YIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAE  229 (467)
T ss_dssp             BCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHH
T ss_pred             cccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhh
Confidence                  1      1   28899999987    379999999999998 76654   88999999999999999977644 


Q ss_pred             ----------CCcc-CCCC------CCccEEEeccccccccCCCceEEEEEEcCh---hHHHHHHHhh-hhcC----CCC
Q 016612          181 ----------PVLS-RPLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGE---RLAKELYFLQ-NAEG----SGL  235 (386)
Q Consensus       181 ----------~~~~-~~~~------~~~di~~~S~sK~~~g~~g~~~G~i~~~~~---~~~~~~~~~~-~~~~----~~~  235 (386)
                                +... ....      ...|++++|+||+++.+.   +|+++++++   +....+.... ...+    ...
T Consensus       230 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~---Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (467)
T 2oqx_A          230 NAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGL  306 (467)
T ss_dssp             HHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred             hhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCC---ceEEEecChhHHHHHHHHHHhhhccCCcccccch
Confidence                      1111 1111      246788999999996542   588887755   2333333222 1111    111


Q ss_pred             ChhhHHHHHhcCCc-H-HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC----C-
Q 016612          236 APFDCWICLRGVKT-M-ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----S-  308 (386)
Q Consensus       236 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~----~-  308 (386)
                      ......++..++.. + ...+++..++.+.+.+.|++. .+              .+.  + . .+.++++.+.    + 
T Consensus       307 ~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~--------------~~~--~-~-~~~~~~~~~~~~~~~~  367 (467)
T 2oqx_A          307 EGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GV--------------VCQ--Q-A-GGHAAFVDAGKLLPHI  367 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TC--------------CEE--E-E-CSSCEEEEHHHHSTTS
T ss_pred             hhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CC--------------eee--c-C-CceEEEEechhhcccC
Confidence            22111111111111 0 123344456666777777654 11              111  0 1 2345666652    1 


Q ss_pred             --HHh-HHHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccC-----ChHHHHHHHHH
Q 016612          309 --LAL-SKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-----DVNDLISDLDK  379 (386)
Q Consensus       309 --~~~-~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-----~~~~~i~~l~~  379 (386)
                        ... ...+.+.+ ...|+.+.+++.+..-..|..    ..+      .....+++|++++..     +++++++.|++
T Consensus       368 ~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~----g~~------~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~  437 (467)
T 2oqx_A          368 PADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKT----GKQ------LPCPAELLRLTIPRATYTQTHMDFIIEAFKH  437 (467)
T ss_dssp             CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT----CSB------CCCSCCEEEECCCTTTSCHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHhcCceecccccccccccccc----ccc------ccCccCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence              122 44556666 667887766332100000000    000      001247899999854     77777777777


Q ss_pred             HHhc
Q 016612          380 ALRT  383 (386)
Q Consensus       380 ~l~~  383 (386)
                      ++++
T Consensus       438 ~l~~  441 (467)
T 2oqx_A          438 VKEN  441 (467)
T ss_dssp             HHHS
T ss_pred             HHhh
Confidence            7754

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.79  E-value=1.6e-18  Score=159.29  Aligned_cols=272  Identities=13%  Similarity=0.022  Sum_probs=164.5

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEe--CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           56 TRDALESLLAKLDKAD--RALCF--TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~--~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      ..+++++.+++++|.+  ..+++  ++||++++ ++..++ +||++++...++.+.  .|...++..|++++.++.+   
T Consensus        51 ~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~--~~~~~a~~~G~~v~~~~~~~~g  127 (361)
T 3m5u_A           51 VHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTK--KAIKEAQILGVNVKTVASSEES  127 (361)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHH--HHHHHHHHTTCCEEEEEECTTT
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHH--HHHHHHHHcCCceEEEecccCc
Confidence            5788899999999984  34544  45579997 455677 888653222223232  2345566778887777642   


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~  203 (386)
                          ++++  + ++++|++|.+++.+|.+|.+.|.     +++ +|+++++|.+++.|..+-..+ +.|++++|.+|++ 
T Consensus       128 ~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~-~~d~~~~s~~K~~-  196 (361)
T 3m5u_A          128 NFDHIPRV--E-FSDNADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS-NIALFYGGVQKNA-  196 (361)
T ss_dssp             TSCSCCCC--C-CCTTSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT-TEEEEEEETTTTS-
T ss_pred             CCCcCChh--h-cCCCCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc-cCCEEEEechhcc-
Confidence                3444  4 78899999999999999999762     333 499999999999988753333 4799999999999 


Q ss_pred             cCCCceEEEEEEcChhHHHHHHH-----------h-hhhcCCCC-ChhhHHHHHhcCC------cHHHHHHHHHHHHHHH
Q 016612          204 GHSDVMAGVLAVKGERLAKELYF-----------L-QNAEGSGL-APFDCWICLRGVK------TMALRVEKQQDNAQKI  264 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~-----------~-~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l  264 (386)
                      ||+|  .|+++++++.+ +.+..           . ......+. +....+.+..+++      .+....++..+..+.+
T Consensus       197 gp~G--~g~l~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l  273 (361)
T 3m5u_A          197 GISG--LSCIFIRKDML-ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATML  273 (361)
T ss_dssp             SCTT--CEEEEEEHHHH-HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCc--cEEEEEcHHHH-hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            6888  69999885533 33321           0 01111122 2222222222222      2344444555555666


Q ss_pred             HHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccC
Q 016612          265 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  343 (386)
Q Consensus       265 ~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~  343 (386)
                      .+.+++.+.+..             ++.........+++|.+++ ......+...+...|+.++.|..            
T Consensus       274 ~~~L~~~~g~~~-------------~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~------------  328 (361)
T 3m5u_A          274 YECIDLSNGFYK-------------GHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHR------------  328 (361)
T ss_dssp             HHHHHTSTTSEE-------------ESSCGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCT------------
T ss_pred             HHHHHHCCCeee-------------ccCCHHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCC------------
Confidence            666665432100             1000101124588999875 22224677777777888766543            


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          344 ASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       344 ~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                                   ..+.+|+|++.    ++++.+++.|++..+
T Consensus       329 -------------~~g~iRiS~~~~~t~edId~l~~al~~~~~  358 (361)
T 3m5u_A          329 -------------ILGGIRASIYNALNLDQVKTLCEFMKEFQG  358 (361)
T ss_dssp             -------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             -------------ccCeEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence                         11349999975    455555555555443

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.77  E-value=1e-17  Score=165.24  Aligned_cols=207  Identities=14%  Similarity=0.080  Sum_probs=147.6

Q ss_pred             hHHHHHHHHHhhcCCCceEEeCcHH-HHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           56 TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~gt-~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ...++++.+++++|.++.+++++|+ .|+. ++.++++|||+|++++++|.++..    .+...|.++++++..      
T Consensus       196 ~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~----~l~lsGa~pv~v~~~~~~~gi  271 (715)
T 3n75_A          196 PHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH----LMMMSDVTPIYFRPTRNAYGI  271 (715)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH----HHHHSCCEEEEECCCBCTTCC
T ss_pred             HHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH----HHHHcCCEEEEEecccccccc
Confidence            6899999999999999999999996 7765 667789999999999999998864    345678888888742      


Q ss_pred             ---------CHHHHHhhhC--CCce---EEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCC-----cc--CC
Q 016612          128 ---------DLDEVASAIG--PWTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS--RP  186 (386)
Q Consensus       128 ---------d~~~l~~~~~--~~~~---~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~-----~~--~~  186 (386)
                               |+++++++++  ++++   ++++++| |++|.+.|+++|.++|++++  +++|++|+.+.     ..  ..
T Consensus       272 ~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~a  348 (715)
T 3n75_A          272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCG  348 (715)
T ss_dssp             BCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSST
T ss_pred             ccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccccccc
Confidence                     7899999886  3344   8999999 99999999999999998763  79999998553     11  12


Q ss_pred             CCCC--ccEE---EeccccccccCCCceEEEEEEcChhHHHHHHHhhh-hcCCCCChhhHHHHHhcC---C--cHHHHHH
Q 016612          187 LELG--ADIV---MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGSGLAPFDCWICLRGV---K--TMALRVE  255 (386)
Q Consensus       187 ~~~~--~di~---~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~--~~~~~~~  255 (386)
                      ...+  +|++   +.|+||+++|+.+  +|++.++++.....+..... ...+..+....+.+..+.   .  .-..+.+
T Consensus       349 l~~g~~aD~vii~~~S~hKtL~gltq--gs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~  426 (715)
T 3n75_A          349 MSGGRVEGKVIYETQSTHKLLAAFSQ--ASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLIN  426 (715)
T ss_dssp             TSSSCCTTCEEEEEECHHHHSSCCTT--CEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             cccCcCCCEEEEEEecccccccCCCC--eeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHH
Confidence            2222  5655   9999999987754  78888876522223322222 223344444333333222   2  1234456


Q ss_pred             HHHHHHHHHHHHHhhC
Q 016612          256 KQQDNAQKIAEFLASH  271 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~  271 (386)
                      +..++++.+++.+++.
T Consensus       427 ~l~~~a~~~r~~L~~i  442 (715)
T 3n75_A          427 GSIERAIKFRKEIKRL  442 (715)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6677777777777654

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.75  E-value=2e-17  Score=158.35  Aligned_cols=279  Identities=14%  Similarity=0.144  Sum_probs=164.1

Q ss_pred             chHHHHHHHHHhhc--CCCceEEeCcHHHHHHHHHH-hc-------C------------------CC---CEEEecCCCC
Q 016612           55 PTRDALESLLAKLD--KADRALCFTSGMAALAAVTH-LL-------G------------------TG---EEIVAGDDLY  103 (386)
Q Consensus        55 ~~~~~l~~~l~~~~--g~~~~i~~~~gt~al~~~~~-~~-------~------------------~g---~~Vlv~~~~~  103 (386)
                      ++.+++++.+++++  +.+++++++||++|+.+++. +.       +                  ||   ++|++.++.|
T Consensus       110 ~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~y  189 (472)
T 1ohv_A          110 NFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAF  189 (472)
T ss_dssp             THHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCC
T ss_pred             HHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCc
Confidence            46777777777776  45678899999999864333 21       1                  45   8999999998


Q ss_pred             CcHHHHHhhhcc-----cCCc-----EEEEeCC-----------------CCHHHHHhhhCC------CceEEEEeCCCC
Q 016612          104 GGTDRLLSRVTP-----KTGV-----VVKRVNT-----------------CDLDEVASAIGP------WTKLVWVESPTN  150 (386)
Q Consensus       104 ~~~~~~~~~~~~-----~~g~-----~~~~v~~-----------------~d~~~l~~~~~~------~~~~v~~~~~~n  150 (386)
                      +++......+..     ..+.     ....++.                 .|+++|++.+++      ++++|++++.+|
T Consensus       190 Hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~  269 (472)
T 1ohv_A          190 HGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQS  269 (472)
T ss_dssp             CCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBC
T ss_pred             ccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcC
Confidence            875432222211     1111     1112221                 157788888865      899999999999


Q ss_pred             CCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCcc---CCCCCC----ccEEEeccccccccCCCceEEEEEEcCh
Q 016612          151 PRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG----ADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       151 ptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~---~~~~~~----~di~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      ++|.+.+    +++|.++|++||+++|+||+|+ .+...   .....+    .|++  |+||++.+     +|+++ + +
T Consensus       270 ~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~-----GG~~~-~-~  340 (472)
T 1ohv_A          270 EGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT-----GGFFH-K-E  340 (472)
T ss_dssp             TTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS-----EEEEE-C-G
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc-----CCccC-c-h
Confidence            9998877    9999999999999999999987 23221   111223    6765  67898412     36665 4 4


Q ss_pred             hHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccC
Q 016612          219 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  296 (386)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~  296 (386)
                      .+.. ..........+.++..++++..+++.+..  ..++..+..+.+.+.|++..       .+++   .   .....+
T Consensus       341 ~~~~-~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~-------~~~~---~---~v~~~~  406 (472)
T 1ohv_A          341 EFRP-NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQ-------ARYP---Q---FISRVR  406 (472)
T ss_dssp             GGSC-SSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-------HHCT---T---TCEEEE
T ss_pred             hhcc-cccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-------hhCC---C---cEEeec
Confidence            3421 11111112224456665555554443221  12233333344444443310       0011   0   001113


Q ss_pred             CCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHH
Q 016612          297 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVND  372 (386)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~  372 (386)
                      +.+.++.+.+.+......+.+.+...|+.+.+++                           .++||++++.    +++++
T Consensus       407 ~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g---------------------------~~~iRi~~~~~~t~e~i~~  459 (472)
T 1ohv_A          407 GRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG---------------------------DKSIRFRPTLVFRDHHAHL  459 (472)
T ss_dssp             EETTEEEEECSSHHHHHHHHHHHHHTTEECEEET---------------------------TTEEEECCCTTCCHHHHHH
T ss_pred             CCceEEEEEeCChhHHHHHHHHHHHCCeEEecCC---------------------------CCEEEEECCCCCCHHHHHH
Confidence            4578888887655456677777777777654321                           3459998864    67777


Q ss_pred             HHHHHHHHHhc
Q 016612          373 LISDLDKALRT  383 (386)
Q Consensus       373 ~i~~l~~~l~~  383 (386)
                      +++.|.+++++
T Consensus       460 ~~~~l~~~l~~  470 (472)
T 1ohv_A          460 FLNIFSDILAD  470 (472)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            77777777764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.70  E-value=6e-16  Score=142.37  Aligned_cols=201  Identities=11%  Similarity=0.073  Sum_probs=134.3

Q ss_pred             HHHHhhcCCC---ceEEeCcHHHH-HHHHHHhcCC----CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           62 SLLAKLDKAD---RALCFTSGMAA-LAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        62 ~~l~~~~g~~---~~i~~~~gt~a-l~~~~~~~~~----g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ++++.+ |.+   ..++++++|.+ +.++++.+++    ||.|++++..|.+..    ..+...|++.+++++.      
T Consensus       124 d~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~----kAliL~Gl~Pv~V~p~~d~~~~  198 (501)
T 3hl2_A          124 DIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMITAGFEPVVIENVLEGDEL  198 (501)
T ss_dssp             HHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECEEEETTEE
T ss_pred             HHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH----HHHHHcCCeEEEEeeeeccccc
Confidence            444444 765   36777777755 4566776663    499999999998886    4455788998888762      


Q ss_pred             --CHHHHHhhhCC---Cc-eEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc------CCCCCC-ccEE
Q 016612          128 --DLDEVASAIGP---WT-KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELG-ADIV  194 (386)
Q Consensus       128 --d~~~l~~~~~~---~~-~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~------~~~~~~-~di~  194 (386)
                        |++++++++++   +. .+|+.+.++|..+.+.|+++|+++|++||+++++|+||+.-...      .....| +|++
T Consensus       199 ~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~v  278 (501)
T 3hl2_A          199 RTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAF  278 (501)
T ss_dssp             EECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEE
Confidence              88999998863   23 34444455554456689999999999999999999999753311      122346 9999


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCCh--hhHHHHH--hcCCcHHHHHHHHHHHHHHHHHHHhh
Q 016612          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP--FDCWICL--RGVKTMALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       195 ~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~  270 (386)
                      +.|.||++..|-|  ++++.++++++.+.+...  ..|.....  ...++.+  .+.+.+....++..++++++.+.+++
T Consensus       279 VqS~HK~llvpIG--G~ii~~~d~e~l~~~~~~--yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~  354 (501)
T 3hl2_A          279 VQSLDKNFMVPVG--GAIIAGFNDSFIQEISKM--YPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKK  354 (501)
T ss_dssp             EEEHHHHHCCCSS--CEEEEESCHHHHHHHHHT--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccccceeecC--ceEEEeCCHHHHHHHHHh--CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999877754  566667777666554332  22322222  2233332  23444556666677777777777776


Q ss_pred             C
Q 016612          271 H  271 (386)
Q Consensus       271 ~  271 (386)
                      .
T Consensus       355 l  355 (501)
T 3hl2_A          355 L  355 (501)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.67  E-value=2.4e-14  Score=131.25  Aligned_cols=214  Identities=19%  Similarity=0.176  Sum_probs=135.6

Q ss_pred             CCchHHHHH----HHHHhhcCCCc-----eEEeCcHHHHH-HHHHHhcCCCCEEEecCCCCCcHHHHHh----hhcccCC
Q 016612           53 GNPTRDALE----SLLAKLDKADR-----ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTG  118 (386)
Q Consensus        53 g~~~~~~l~----~~l~~~~g~~~-----~i~~~~gt~al-~~~~~~~~~g~~Vlv~~~~~~~~~~~~~----~~~~~~g  118 (386)
                      |.....++|    ++.+++||.+.     .+-..||+.|. .+.+++++|||+|+..+..++++..+-.    .-....|
T Consensus        94 Gce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg  173 (490)
T 3ou5_A           94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  173 (490)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------
T ss_pred             CChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCccccccc
Confidence            444444443    55678899884     46778999775 5778899999999988887766542210    0111122


Q ss_pred             cE--EEEeCC------CCHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC-----CCCcc
Q 016612          119 VV--VKRVNT------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLS  184 (386)
Q Consensus       119 ~~--~~~v~~------~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-----~~~~~  184 (386)
                      .-  ...+..      .|.+++++... .++++|+.-...+|  ...|++++.++|++.|.+|++|.+|.     .+.++
T Consensus       174 ~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p  251 (490)
T 3ou5_A          174 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP  251 (490)
T ss_dssp             ------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC
T ss_pred             ccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccC
Confidence            22  222211      28889987765 68999998766654  66899999999999999999999985     56678


Q ss_pred             CCCCCCccEEEeccccccccCCCceEEEEEEcCh--------------hHHHHHHHhhhhcCCCCChhh--HHHH---Hh
Q 016612          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEGSGLAPFD--CWIC---LR  245 (386)
Q Consensus       185 ~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~---~~  245 (386)
                      +|... +|++++|.||+|.||.   +|+|.++++              ++.+++.........+.+...  +..+   ..
T Consensus       252 sP~~~-ADvVTtTTHKTLrGPr---GG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~E  327 (490)
T 3ou5_A          252 SPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ  327 (490)
T ss_dssp             CGGGT-CSEEEEESSSTTCSCS---CEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH
T ss_pred             Ccccc-ceEEeccccccccCCC---ceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHH
Confidence            88874 9999999999998875   699998863              355555444332222211111  1111   11


Q ss_pred             -cCCcHHHHHHHHHHHHHHHHHHHhhCC
Q 016612          246 -GVKTMALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       246 -~~~~~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                       ....+..+..+..+|++.|.+.|.++.
T Consensus       328 a~~p~fk~Ya~qVv~NAkaLA~~L~~~G  355 (490)
T 3ou5_A          328 ACTPMFREYSLQVLKNARAMADALLERG  355 (490)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence             222456777888899999999998864

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.62  E-value=3.5e-15  Score=139.06  Aligned_cols=210  Identities=12%  Similarity=0.049  Sum_probs=135.7

Q ss_pred             hHHHHHHHHHhhcCCCc---eEEeCcHH-HHHHHHHHhcCC----CCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKADR---ALCFTSGM-AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~---~i~~~~gt-~al~~~~~~~~~----g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      +.+.+..++.+.+|.++   .++++++| .++.++++.+++    ++.|++++..|.+..    +.+...|+..++++..
T Consensus        99 ~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~----kAl~l~Gl~p~~v~~~  174 (450)
T 3bc8_A           99 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMVTAGFEPVVIENV  174 (450)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECCE
T ss_pred             HHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH----HHHHHcCCeeEEEEee
Confidence            34566777777778773   47777777 445555555443    899999999998886    5556788888888652


Q ss_pred             --------CHHHHHhhhCC---CceEEEEeCC-CCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc------CCCC-
Q 016612          128 --------DLDEVASAIGP---WTKLVWVESP-TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLE-  188 (386)
Q Consensus       128 --------d~~~l~~~~~~---~~~~v~~~~~-~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~------~~~~-  188 (386)
                              |++++++++.+   +..++++.+| ++.+|.+.|+++|+++|++||+++++|+||+.....      .... 
T Consensus       175 ~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~  254 (450)
T 3bc8_A          175 LEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV  254 (450)
T ss_dssp             EETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH
T ss_pred             ecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcc
Confidence                    89999999863   2344444444 444568899999999999999999999999853211      1112 


Q ss_pred             CCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh--cCCcHHHHHHHHHHHHHHHHH
Q 016612          189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAE  266 (386)
Q Consensus       189 ~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~  266 (386)
                      .++|+++.|.||++..+.+  ++++..+++...+..........+..+....|..+.  +.+.+....++..+.++.+.+
T Consensus       255 ~~AD~~v~S~HK~l~a~~~--~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~  332 (450)
T 3bc8_A          255 GRIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLST  332 (450)
T ss_dssp             SCCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEECCccCCCchhc--cEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999988766  788887766655444322111111111122222222  222233333444566667777


Q ss_pred             HHhhC
Q 016612          267 FLASH  271 (386)
Q Consensus       267 ~l~~~  271 (386)
                      .+++.
T Consensus       333 ~l~~~  337 (450)
T 3bc8_A          333 QLKKL  337 (450)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            66654

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.59  E-value=1.3e-14  Score=136.68  Aligned_cols=280  Identities=15%  Similarity=0.101  Sum_probs=167.7

Q ss_pred             hHHHHHHHHHhhc-CCCceEEeCcHHHHHHHHHHh---cCCCCEEEecCCCCCcHHHHHhhh--cccCCcEEEEeCCCCH
Q 016612           56 TRDALESLLAKLD-KADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRV--TPKTGVVVKRVNTCDL  129 (386)
Q Consensus        56 ~~~~l~~~l~~~~-g~~~~i~~~~gt~al~~~~~~---~~~g~~Vlv~~~~~~~~~~~~~~~--~~~~g~~~~~v~~~d~  129 (386)
                      ...++.+.+++.+ +.+...+++||++|....+.+   ....++|+..+.+|++........  ......++..++..|+
T Consensus       128 ~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~  207 (454)
T 4ao9_A          128 LEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDA  207 (454)
T ss_dssp             SHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCH
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchH
Confidence            4556677777766 445788889999997533332   234567887777776642110000  1112235667777899


Q ss_pred             HHHHhhhC---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCCCccEEEec
Q 016612          130 DEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHS  197 (386)
Q Consensus       130 ~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~di~~~S  197 (386)
                      +.+++.+.   +++.+|+++......|.+.|    +++|.++|++||+++|+||++. |-..     ......+|+++  
T Consensus       208 ~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t--  284 (454)
T 4ao9_A          208 QTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTT--  284 (454)
T ss_dssp             HHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEE--
T ss_pred             HHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEE--
Confidence            99998875   57889999998888898876    9999999999999999999986 3221     11234568885  


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHhh----hhcCCCCChhhHHHHHhcCCcH--HHHHHHHHHHHHHHHHHHhhC
Q 016612          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  271 (386)
Q Consensus       198 ~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~  271 (386)
                      ++|.++|  |+.+|.+.++ +++++.+....    .....+.++...++.+..++.+  ....++..+..+.+.+.|++.
T Consensus       285 ~gK~lgg--G~Piga~~~~-~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l  361 (454)
T 4ao9_A          285 LGKYIGG--GMSFGAFGGR-ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNAL  361 (454)
T ss_dssp             EEGGGGT--TSSCEEEEEC-HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccCC--CCcceeeeeH-HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            5899865  4557888876 55655442211    1112234555555554443221  223344445555555555432


Q ss_pred             CCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-------------CHHhHHHHHhhcCcceeccCCCCcccccccc
Q 016612          272 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTKYFSITVSFGSVKSLISMP  338 (386)
Q Consensus       272 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p  338 (386)
                      ..    ..+-..          ..++.|.++.+.+.             +......+...+...|+.+.+...       
T Consensus       362 ~~----~~~~~~----------~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~~-------  420 (454)
T 4ao9_A          362 CA----NEGVAM----------QFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRGF-------  420 (454)
T ss_dssp             HH----HHTBSC----------EEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTCE-------
T ss_pred             Hh----hCCCCE----------EEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCCC-------
Confidence            10    000000          11345667776651             233445666667777876544322       


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEe--ccCChHHHHHHHHHHHhcC
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISV--GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~--~~~~~~~~i~~l~~~l~~~  384 (386)
                                            +.++.  +.+++|++++.++++|.+.
T Consensus       421 ----------------------~~~s~~~T~~dId~~l~al~~~l~~~  446 (454)
T 4ao9_A          421 ----------------------VVLSLPLTDADIDRYVAAIGSFIGGH  446 (454)
T ss_dssp             ----------------------EECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             ----------------------EEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence                                  32332  3478899999999988764

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.58  E-value=5.1e-14  Score=133.10  Aligned_cols=290  Identities=18%  Similarity=0.180  Sum_probs=169.4

Q ss_pred             hHHHHHHHHHhhcCC---CceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHH-HHHhhhcc----------cCC
Q 016612           56 TRDALESLLAKLDKA---DRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTD-RLLSRVTP----------KTG  118 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~-~~~~~~~~----------~~g  118 (386)
                      ...++.+.|.++...   +..++++||++|+...+.   .....++|+.-+.+|++.. ..+ ....          ...
T Consensus       108 ~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~al-s~t~~~~~~~~~~~p~~  186 (456)
T 4atq_A          108 GYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTM-ALTAKAMPYKTNFGPFA  186 (456)
T ss_dssp             HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHH-HHCCCCTTTTTTSCSCC
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCcccccc-ccccCccccccCCCCcc
Confidence            455677778887743   356778999999864332   2344567887777776642 222 1110          011


Q ss_pred             cEEEEeCCC-----------CHH-------HHHhhhC-CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEe
Q 016612          119 VVVKRVNTC-----------DLD-------EVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVD  175 (386)
Q Consensus       119 ~~~~~v~~~-----------d~~-------~l~~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D  175 (386)
                      ..+..++..           +.+       .+++.+. +++.+|+++......|.+.+    +++|.++|++||+++|+|
T Consensus       187 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~D  266 (456)
T 4atq_A          187 PEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIAD  266 (456)
T ss_dssp             SSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred             ccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEec
Confidence            234444432           122       2333333 47899999998887888764    899999999999999999


Q ss_pred             CCCCC-C---Ccc--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc
Q 016612          176 NSIMS-P---VLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (386)
Q Consensus       176 ~a~~~-~---~~~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (386)
                      |++.. +   .+.  ......+|+++.  +|.++|  |+.+|.++++ +++.+.+.........+.++...++++..++.
T Consensus       267 EV~tG~GRtG~~~a~e~~gv~PDivt~--gK~lgg--g~P~~av~~~-~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~  341 (456)
T 4atq_A          267 EVQSGFCRTGEWFAVDHEGVVPDIITM--AKGIAG--GLPLSAITGR-ADLLDAVHPGGLGGTYGGNPVACAAALAAIDT  341 (456)
T ss_dssp             CTTTTTTTTSSSSGGGGTTCCCSEEEE--CGGGGT--TSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHH
T ss_pred             ccccccCCccccccccccCCCCchhhh--hhcccC--cCCceeeEec-HHHHhcccccCCCCCCCCChHHHHhhHHHHHH
Confidence            99863 2   222  122345799865  798864  4557888877 44554443333333345566777766666554


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCC-CcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-------CHHhHHHHHhhcCc
Q 016612          250 MALRVEKQQDNAQKIAEFLASHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------SLALSKHVVETTKY  321 (386)
Q Consensus       250 ~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~  321 (386)
                      +..  +.+.++++.+.+++.+.- .+...+ + ...++    ...+.++.|.++.+.+.       +.+...++.+.+..
T Consensus       342 i~~--~~l~~~~~~~g~~l~~~L~~l~~~~-~-~~~~~----~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~  413 (456)
T 4atq_A          342 MEQ--HDLNGRARHIEELALGKLRELAAEL-S-AGGGS----VVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLK  413 (456)
T ss_dssp             HHH--TTHHHHHHHHHHHHHHHHHHHHHHC-C----------CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH
T ss_pred             Hhh--ccHHHHHHHHHHHHHHHHHHHHHhc-c-cccCC----ceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHH
Confidence            322  233444444433332210 000000 0 00000    01123567888888872       34557788888888


Q ss_pred             ceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          322 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       322 ~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      +|+.+...+                         ...+.||+.+.    .+++++.++.|.++|++.
T Consensus       414 ~Gvl~~~~g-------------------------~~~~~irl~PpL~it~~~id~~l~~l~~al~a~  455 (456)
T 4atq_A          414 EGVIILTCG-------------------------TYGNVIRLLPPLVISDELLIDGLEVLAAAIKAH  455 (456)
T ss_dssp             TTEECEEEC-------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEecC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence            888654321                         12345888764    488889999999999763

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.51  E-value=1.4e-13  Score=130.54  Aligned_cols=314  Identities=16%  Similarity=0.160  Sum_probs=178.5

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCC-C--CchHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHhc----
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G--NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLL----   90 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g--~~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~~----   90 (386)
                      ...+|.-+|.+.++......+     ...|... +  ++...++.+.|.++.+.  +.+.+++||++|+...+.+.    
T Consensus        78 ~~~lGh~~p~v~~Ai~~q~~~-----l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~  152 (473)
T 4e3q_A           78 NMVAGFDHKGLIDAAKAQYER-----FPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLH  152 (473)
T ss_dssp             TCTTCSCCHHHHHHHHHHHHH-----CCCCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCHHHHHHHHHHHHh-----cccccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHH
Confidence            455777777766543221111     1112222 2  23566788888888754  47888899999986433321    


Q ss_pred             ----CC-CCEEEecCCCCCcH-HHHHhhhc-----ccCC---cEEEEeCCC------------------CHHHHHhhhC-
Q 016612           91 ----GT-GEEIVAGDDLYGGT-DRLLSRVT-----PKTG---VVVKRVNTC------------------DLDEVASAIG-  137 (386)
Q Consensus        91 ----~~-g~~Vlv~~~~~~~~-~~~~~~~~-----~~~g---~~~~~v~~~------------------d~~~l~~~~~-  137 (386)
                          ++ ..+|+.-...|++. ...+ ...     +.++   .....++..                  ..+++++.+. 
T Consensus       153 ~~~g~~~r~~ii~~~~~yHG~t~~a~-s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  231 (473)
T 4e3q_A          153 AAEGKPQKRKILTRWNAYHGVTAVSA-SMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQR  231 (473)
T ss_dssp             HHTTCTTCCEEEEETTCCCCSSHHHH-HHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCcceEEEeeceECCCccccc-cccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHh
Confidence                12 34677777777653 3222 111     0111   122233221                  1234444432 


Q ss_pred             ---CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEecccccccc
Q 016612          138 ---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAG  204 (386)
Q Consensus       138 ---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g  204 (386)
                         +++.+|+++......|.+.+    +++|.++|++||+++|.||++.. |-..     ......+|+++  ++|.++|
T Consensus       232 ~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~g  309 (473)
T 4e3q_A          232 EGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTA  309 (473)
T ss_dssp             HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGT
T ss_pred             hCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccC
Confidence               56889999998887788764    89999999999999999999863 2221     12234579986  5899864


Q ss_pred             CCCceEEEEEEcChhHHHHHHHhh-------hhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceE
Q 016612          205 HSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV  277 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  277 (386)
                       +++-+|.++++ +++.+.+....       .....+-++..+++++..++.+..  +.+.++++.+.+++.+.-     
T Consensus       310 -G~~Pl~av~~~-~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L-----  380 (473)
T 4e3q_A          310 -GFFPMGAVILG-PELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN--EGLAENVRRLAPRFEERL-----  380 (473)
T ss_dssp             -TSSCCEEEEEC-HHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH--SSHHHHHHHHHHHHHHHH-----
T ss_pred             -CCCCccccccc-HHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc--ccHHHHHHHHHHHHHHHH-----
Confidence             22557888876 55665553321       122234556666666665553322  233444444444443311     


Q ss_pred             ecCCCCCCCchhhhhhccCCCCceEEEEeC-----------CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCC
Q 016612          278 NYAGLPEHPGHELHYSQAKGAGSVLSFLTG-----------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  346 (386)
Q Consensus       278 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~  346 (386)
                        ..+.+.+.+    .+.++.|.++.+.+-           +.....++.+.+..+|+.+++.+                
T Consensus       381 --~~l~~~~~v----~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g----------------  438 (473)
T 4e3q_A          381 --KHIAERPNI----GEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLG----------------  438 (473)
T ss_dssp             --HHHTTSTTE----EEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEET----------------
T ss_pred             --HHHhcCCCe----eEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecC----------------
Confidence              001111211    123567788888761           12345678888888888654322                


Q ss_pred             CHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhcC
Q 016612          347 PVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       347 ~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~~  384 (386)
                                  +.+|+++    +.++++++++.+.++|+++
T Consensus       439 ------------~~i~l~PPL~it~~eid~~~~~l~~al~~v  468 (473)
T 4e3q_A          439 ------------QSVVLCPPFILTEAQMDEMFDKLEKALDKV  468 (473)
T ss_dssp             ------------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                        2266654    4588899999999988763

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.32  E-value=1.6e-11  Score=124.13  Aligned_cols=207  Identities=12%  Similarity=0.076  Sum_probs=120.2

Q ss_pred             HHHHhhhC--------CCceEEEEeCC-CCCCccccc----HHHHHHHHHHcCCEEEEeCCCC-CCCccCC-----CCCC
Q 016612          130 DEVASAIG--------PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELG  190 (386)
Q Consensus       130 ~~l~~~~~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~~~-----~~~~  190 (386)
                      +++++.+.        +++.+|+++.. ++..|.+.+    +++|.++|++||+++|+||++. .|.....     ....
T Consensus       577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~  656 (831)
T 4a0g_A          577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK  656 (831)
T ss_dssp             HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC
T ss_pred             HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCC
Confidence            45666663        46789999987 888888764    8999999999999999999976 2222211     1234


Q ss_pred             ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh------hhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHH
Q 016612          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  264 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  264 (386)
                      .|++  +++|.++| +.+.+|+++++ +++.+.+...      ......+.++..+++++..++.+..  +...++.   
T Consensus       657 PDii--tlsK~L~g-G~~Plgav~~~-~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~--~~l~~~~---  727 (831)
T 4a0g_A          657 PDIA--CFAKLLTG-GMVPLAVTLAT-DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKD--PETNHNI---  727 (831)
T ss_dssp             CSEE--EECGGGGT-TSSCCEEEEEC-HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHC--TTTCTTB---
T ss_pred             CcEE--EEeccccc-CccCcEEEEEC-HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHh--hHHHHHH---
Confidence            6877  47999965 22578999987 4455543221      1122234455555554443322110  0000000   


Q ss_pred             HHHHhhCCCcceEecCC--------CCCCCchhhhhhccCCCCceEEEEeCCH--------HhHHHHHhhcCcceeccCC
Q 016612          265 AEFLASHPRVKKVNYAG--------LPEHPGHELHYSQAKGAGSVLSFLTGSL--------ALSKHVVETTKYFSITVSF  328 (386)
Q Consensus       265 ~~~l~~~~~~~~~~~~~--------l~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~~~~  328 (386)
                          .+.   ...+...        +..++.    ....++.|.++.+.+...        ....++.+.+...|+.+++
T Consensus       728 ----~~~---~~~l~~~l~~~l~~~l~~~~~----v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p  796 (831)
T 4a0g_A          728 ----TSQ---GKTLRELWDEELVQQISSHSA----VQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRP  796 (831)
T ss_dssp             ----CTT---SSBBCCCSCHHHHHHHHHSTT----EEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCC
T ss_pred             ----HHH---HHHHHHHHHHHHHHHHhhCCC----ceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEe
Confidence                000   0011000        011111    112245678888887321        2456777888888887654


Q ss_pred             CCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          329 GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       329 G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      ++                            +.||+++.    .++++++++.|.+++++.
T Consensus       797 ~g----------------------------~~lrl~pp~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          797 LG----------------------------NVIYLMCGPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             BT----------------------------TEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             cC----------------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            32                            34888853    488888888888888765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=82.08  E-value=6.5  Score=28.15  Aligned_cols=90  Identities=21%  Similarity=0.178  Sum_probs=56.3

Q ss_pred             ceEEeCcHHHHHHHHHHhcCCC-CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCC
Q 016612           72 RALCFTSGMAALAAVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (386)
Q Consensus        72 ~~i~~~~gt~al~~~~~~~~~g-~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~n  150 (386)
                      ..++++.|.-+..++..+.+.| ..|.+.+..-...    .. +...++.....+..+.+++.+.+. +..+|+...+..
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~----~~-~~~~~~~~~~~d~~~~~~~~~~~~-~~d~vi~~~~~~   80 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAAL----AV-LNRMGVATKQVDAKDEAGLAKALG-GFDAVISAAPFF   80 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHH----HH-HHTTTCEEEECCTTCHHHHHHHTT-TCSEEEECSCGG
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHH----HH-HHhCCCcEEEecCCCHHHHHHHHc-CCCEEEECCCch
Confidence            4566666665555555666667 5666544322111    12 225677888888888888988875 567777655322


Q ss_pred             CCcccccHHHHHHHHHHcCCEEE
Q 016612          151 PRQQICDIRKIAEMAHAHGALLL  173 (386)
Q Consensus       151 ptG~~~~l~~i~~la~~~~~~li  173 (386)
                            ....+.+.|.+.|+..+
T Consensus        81 ------~~~~~~~~~~~~g~~~~   97 (118)
T 3ic5_A           81 ------LTPIIAKAAKAAGAHYF   97 (118)
T ss_dssp             ------GHHHHHHHHHHTTCEEE
T ss_pred             ------hhHHHHHHHHHhCCCEE
Confidence                  23678888888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	386
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	1e-119
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	1e-115
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	1e-107
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	5e-98
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	3e-97
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	2e-96
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	1e-95
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	4e-92
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	2e-84
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	2e-66
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	2e-36
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	6e-18
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	1e-12
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	2e-11
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	3e-09
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	1e-08
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	8e-08
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	2e-07
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	4e-07
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-06
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	4e-06
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	8e-06
d1mdoa_	376	c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty	1e-05
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	1e-05
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	1e-04
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	2e-04
d1bs0a_	383	c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a	5e-04
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	0.001
d1eg5a_	376	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	0.004

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  349 bits (897), Expect = e-119
 Identities = 322/379 (84%), Positives = 355/379 (93%)

Query: 8   GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKL 67
            VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDALESLLAKL
Sbjct: 2   SVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKL 61

Query: 68  DKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
           DKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT 
Sbjct: 62  DKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 121

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
            LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPL
Sbjct: 122 KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL 181

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
           ELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+
Sbjct: 182 ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI 241

Query: 248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG 307
           KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TG
Sbjct: 242 KTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG 301

Query: 308 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI 367
           S+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GI
Sbjct: 302 SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI 361

Query: 368 EDVNDLISDLDKALRTGPL 386
           EDV+DLISDLD A +T PL
Sbjct: 362 EDVDDLISDLDIAFKTFPL 380

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  338 bits (868), Expect = e-115
 Identities = 156/387 (40%), Positives = 235/387 (60%), Gaps = 12/387 (3%)

Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 7   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 66

Query: 59  ALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE  LA L++ +  L   SG++A+      L   G+ IV+   +YG T   LS   PK 
Sbjct: 67  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 126

Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+
Sbjct: 127 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 186

Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGLA 236
            MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +     L++  G  ++
Sbjct: 187 FMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 246

Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 296
           PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +EL   Q  
Sbjct: 247 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 306

Query: 297 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 355
             G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  E R   G
Sbjct: 307 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 366

Query: 356 LTEDLVRISVGIEDVNDLISDLDKALR 382
           +T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 367 ITDGLIRLSVGLEDPEDIINDLEHAIR 393

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  317 bits (813), Expect = e-107
 Identities = 142/388 (36%), Positives = 229/388 (59%), Gaps = 12/388 (3%)

Query: 7   PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTR 57
           PG +T  ++   +     GAL  P+YQTATF  P+          E   + Y+R  NPT 
Sbjct: 2   PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTL 61

Query: 58  DALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK 116
           + LE+ +A L+  +  L   SGM A+ + +  LL  G+E++ G+ LYG T   L     +
Sbjct: 62  NLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE 121

Query: 117 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
            GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++VDN
Sbjct: 122 FGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDN 181

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQNAEGSGL 235
           +  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +     L++  G+ L
Sbjct: 182 TYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL 241

Query: 236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA 295
           +P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L   Q 
Sbjct: 242 SPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQM 301

Query: 296 KGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR 354
              G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R   
Sbjct: 302 SQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHY 361

Query: 355 GLTEDLVRISVGIEDVNDLISDLDKALR 382
           G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 362 GISEGLVRLSVGLEDIDDLLADVQQALK 389

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  294 bits (754), Expect = 5e-98
 Identities = 145/376 (38%), Positives = 217/376 (57%), Gaps = 3/376 (0%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           +T+ +      D  YG +  P++ ++T+      E   +DY+R GNPTRD ++  LA+L+
Sbjct: 4   ATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELE 63

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEE-IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
               A+   +GM+A+  VT +     + +VA  D YGG+ RL   +  +    V  V+  
Sbjct: 64  GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 123

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
           D   + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL
Sbjct: 124 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL 183

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
            LGAD+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG+
Sbjct: 184 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 243

Query: 248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-T 306
           +T+  R+E  Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF   
Sbjct: 244 RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD 303

Query: 307 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 366
           G     +  +     F++  S G V+SLIS    M+HA +  E R A G++E L+RIS G
Sbjct: 304 GDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG 363

Query: 367 IEDVNDLISDLDKALR 382
           IED  DLI+DL+   R
Sbjct: 364 IEDGEDLIADLENGFR 379

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  292 bits (749), Expect = 3e-97
 Identities = 145/390 (37%), Positives = 217/390 (55%), Gaps = 10/390 (2%)

Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S     G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           E  +A L+ A   L F+SG A  A +   L  G   V+  D+YG               V
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYG-GTHRYFTKVANAHGV 119

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH----GALLLVDN 176
                   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H      +L+VDN
Sbjct: 120 ETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           + +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239

Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH---PGHELHYS 293
           PFD W+  RG+KT+ LRV +   +A KIAEFLA+             +        L   
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQH 299

Query: 294 QAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ 352
           +    G ++SF + G    +     +T+ F++  S G ++SL+ +P  M+H  IP E R+
Sbjct: 300 RDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEARE 359

Query: 353 ARGLTEDLVRISVGIEDVNDLISDLDKALR 382
           A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 360 ASGVFDDLVRISVGIEDTDDLLEDIKQALK 389

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  292 bits (747), Expect = 2e-96
 Identities = 127/417 (30%), Positives = 187/417 (44%), Gaps = 45/417 (10%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDAL 60
            TL ++   E +P   +   P+Y T ++   S          +     Y+R  NPT D L
Sbjct: 4   ETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVL 63

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEE-IVAGDDLYGGTDRLLSRV-TPKTG 118
           E  LA L+    AL   SG AA       L    + IV+  +LYGGT             
Sbjct: 64  EKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGI 123

Query: 119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178
            V         +E  +     T+  WVES  NP   I D+  +A+ A   G  L+VDN+ 
Sbjct: 124 EVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTF 183

Query: 179 -MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK--------------- 222
            M   L RPL  GA +V HS TK++ GH  V+AG +   G    +               
Sbjct: 184 GMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH 243

Query: 223 ---------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 266
                    EL F+  A        G  L PF+ W+ L G++T++LR E+  +N   +A 
Sbjct: 244 GLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAH 303

Query: 267 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSF-LTGSLALSKHVVETTKYFSI 324
           +L   P+V  VNY GLP HP H+      KG  G+VL+F L G    +K  +   K  S 
Sbjct: 304 WLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISH 363

Query: 325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
             + G  ++L   P   +H+ +  E +   G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 364 LANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  289 bits (740), Expect = 1e-95
 Identities = 115/370 (31%), Positives = 181/370 (48%), Gaps = 12/370 (3%)

Query: 23  YGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
             A++TP+  T+ +     +E           ++Y R GNPT   LE  ++ L+ A+  L
Sbjct: 27  TDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTL 86

Query: 75  CFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134
              SGM A   +   L      +          R+          +   V          
Sbjct: 87  LMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALE 146

Query: 135 AIGPW--TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
                    L + ESPTNP  +  DI  ++++ H  GAL+ +D +  +P+  + L LGAD
Sbjct: 147 LALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGAD 206

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL 252
           +V+HSATKF+ GH+DV+AG       +L  E+  L +  G  L P   ++ +RG+KT+ L
Sbjct: 207 LVLHSATKFLGGHNDVLAGC-ISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHL 265

Query: 253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLAL 311
           RV++Q   A ++AE L +HP+V+ V Y GL  HP H +   Q  G G  +SF + G L  
Sbjct: 266 RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLT 325

Query: 312 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN 371
           +   V+  K   I  SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +
Sbjct: 326 TAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFD 385

Query: 372 DLISDLDKAL 381
           DL +D+ +AL
Sbjct: 386 DLKADILQAL 395

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  280 bits (716), Expect = 4e-92
 Identities = 138/384 (35%), Positives = 228/384 (59%), Gaps = 12/384 (3%)

Query: 10  STLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALE 61
           +T  ++ + + D +GA   P+YQT+TF   +          +   Y YTR GNPT   LE
Sbjct: 6   ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 65

Query: 62  SLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
             +A L+K +  +  +SGM A+AA V  +L  G+ +++ + LYG T  L      K G+ 
Sbjct: 66  GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 125

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIM 179
           V  +NT    EV   + P TK+V+ E+P NP  +I D  R   +     G L++ DN+  
Sbjct: 126 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 185

Query: 180 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQNAEGSGLAPF 238
           SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +     +++  GS ++P 
Sbjct: 186 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 245

Query: 239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA 298
           D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G  +H GH++   Q +  
Sbjct: 246 DAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMY 305

Query: 299 GSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT 357
           GS+++F+       +K +++  K  ++ VS G  +SLI  P  M+HA +P E R+A G+T
Sbjct: 306 GSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGIT 365

Query: 358 EDLVRISVGIEDVNDLISDLDKAL 381
           + ++R+SVGIED ++LI+D  + L
Sbjct: 366 DGMIRLSVGIEDADELIADFKQGL 389

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  258 bits (659), Expect = 2e-84
 Identities = 131/326 (40%), Positives = 199/326 (61%), Gaps = 3/326 (0%)

Query: 59  ALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE  +AKL+ A+      SGM A+ A+V   L  G+ +++ D LYG T  L      K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP-RQQICDIRKIAEMAHAHGALLLVDN 176
           GV V  ++      +   + P T++V+ E+P NP  + I     + +       L++VDN
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGL 235
           +  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK     +++  G+ +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA 295
           +P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q 
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241

Query: 296 KGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 355
           K  GS+++F    L  +K V++     S+ VS G  +SLI  P  M+HA +P E R+A G
Sbjct: 242 KMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAG 301

Query: 356 LTEDLVRISVGIEDVNDLISDLDKAL 381
           LT++L+R+SVG E+V D+I DL +AL
Sbjct: 302 LTDNLIRLSVGCENVQDIIDDLKQAL 327

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  213 bits (543), Expect = 2e-66
 Identities = 95/388 (24%), Positives = 178/388 (45%), Gaps = 19/388 (4%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYTRSGNPTRDA 59
            T L+N         GA+++ + + ++    S            NG   Y R G  T  +
Sbjct: 3   DTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFS 62

Query: 60  LESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118
           L+  + +L+     + F  G AA+A ++   +  G+ ++  +  Y  +    S++  K G
Sbjct: 63  LQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG 122

Query: 119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP--RQQICDIRKIAEMAHAHGALLLVDN 176
           V     +     ++   + P TK+V++ESP +             A  +    A++++DN
Sbjct: 123 VTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 182

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           +  + VL + L+ G D+ + +ATK++ GHSD M G          +         G  + 
Sbjct: 183 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN-AYLMGQMVD 241

Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 296
               +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE       
Sbjct: 242 ADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT 301

Query: 297 GAGSVLSFL---TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA 353
           G+  + SF+     +     + ++    FS+  S+G  +SLI        A+I    +  
Sbjct: 302 GSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAI--RPQGE 359

Query: 354 RGLTEDLVRISVGIEDVNDLISDLDKAL 381
              +  L+R+ +G+EDV+DLI+DLD   
Sbjct: 360 IDFSGTLIRLHIGLEDVDDLIADLDAGF 387

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  134 bits (337), Expect = 2e-36
 Identities = 52/342 (15%), Positives = 109/342 (31%), Gaps = 29/342 (8%)

Query: 36  FKQPSATENGPYDYTRSGNPTRDALESLLAKL--DKADRALCFTSGMAA-LAAVTHLLGT 92
           F      +     Y  S        E  L  L  D+ D+ + F    +A LA +  L   
Sbjct: 32  FLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPK 91

Query: 93  GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 152
                  +     +   + R         K   +  + E+ + I   T ++   S  + +
Sbjct: 92  KVIHYLPELPGHPS---IERSCKIVNA--KYFESDKVGEILNKIDKDTLVIITGSTMDLK 146

Query: 153 Q-QICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHS 206
             ++ + +K+   A    A++ VD++  + V         L+LGAD+V+ S  K + G  
Sbjct: 147 VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR 206

Query: 207 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKIA 265
             +        + L  ++Y      G    P       R +K   L R+ K  + A+   
Sbjct: 207 GGLL----AGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFD 262

Query: 266 EFLASHPRVKKVNYAGLPEHPGHEL-HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFS 323
                    +                     K      +  +   + +  ++++     +
Sbjct: 263 LSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIIT 322

Query: 324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 365
           IT        +  MP       I +  R A  + ++ +  ++
Sbjct: 323 IT--------VAGMPGASKSLRIDLTSRDAERIDDNYIIKAI 356

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 82.3 bits (202), Expect = 6e-18
 Identities = 65/351 (18%), Positives = 122/351 (34%), Gaps = 35/351 (9%)

Query: 51  RSGNPTRDALE---SLLAKLDKADRA-LCFTSG------MAALAAVTHLLGTGEEIVAGD 100
           R G    +A++   + +A L  AD   + FTSG      +A   A       G+ I+   
Sbjct: 41  RFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSK 100

Query: 101 DLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQI 155
             +        ++  + G  V  +        DL E+ +A+   T LV +    N    +
Sbjct: 101 TEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV 159

Query: 156 CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLA 214
            DI  I EM  A G +  VD +     L     +L  D++  S  K          G L 
Sbjct: 160 QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPK---GIGALY 216

Query: 215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV 274
           V+     K    ++     G            V  +    E  +   +++A  +     +
Sbjct: 217 VR----RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGL 272

Query: 275 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL 334
           +   + G+ +     L+     GA ++L+    S    +          + VS GS  + 
Sbjct: 273 RNRLWNGIKDIEEVYLNGDLEHGAPNILNV---SFNYVEGESLIMALKDLAVSSGSACTS 329

Query: 335 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL 381
            S+       ++ +    A       +R S+G     E+++  I  + K++
Sbjct: 330 ASLEPSYVLRALGLNDELAHS----SIRFSLGRFTTEEEIDYTIELVRKSI 376

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.9 bits (162), Expect = 1e-12
 Identities = 39/327 (11%), Positives = 86/327 (26%), Gaps = 34/327 (10%)

Query: 77  TSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----TCDLDEV 132
            S       + H     + I+          + +     +  V+   +       DL  V
Sbjct: 124 MSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAV 183

Query: 133 ASA----IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN--SIMSPVLSRP 186
            +            +   +     +    + ++A +   +    +V+N   + S      
Sbjct: 184 EAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHL 243

Query: 187 LEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241
           ++        D  + S  K           ++A   E   +++  +     S     D  
Sbjct: 244 IQQGARVGRIDAFVQSLDKNFMVPVGGA--IIAGFNEPFIQDISKMYPGRASASPSLDVL 301

Query: 242 ICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG 299
           I L   G       ++++++    ++  L              P +P       +     
Sbjct: 302 ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH 361

Query: 300 SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED 359
              +       L    V   +   +           +   FMSHA               
Sbjct: 362 HDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSG--HTFRGFMSHADNY---------PCA 410

Query: 360 LVRISVGI----EDVNDLISDLDKALR 382
            +  +  I    +DV+  I  LDK L 
Sbjct: 411 YLNAAAAIGMKMQDVDLFIKRLDKCLN 437

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 62.6 bits (151), Expect = 2e-11
 Identities = 40/268 (14%), Positives = 84/268 (31%), Gaps = 39/268 (14%)

Query: 125 NTCDLDEVASAIGPWTKL-----VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM 179
               ++++ +AI    +L     V       P +   DI +IA++   +    +++ +  
Sbjct: 192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYA 251

Query: 180 SPV------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS 233
                    L +  +   D V+ S+ K +     +  G++        KE+        S
Sbjct: 252 IQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP--IGGGLVYSTDAEFIKEISLSYPGRAS 309

Query: 234 GLAPFDCWI--CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 291
                +  +     G K     V+ Q+++ + + E L      KK     L         
Sbjct: 310 ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS--KKTGGKFLDVESPIASC 367

Query: 292 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
            S       + + L          ++ T +F                   +H  I +   
Sbjct: 368 ISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFG-----------NCYLGTYTHDYIVMNA- 415

Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDK 379
            A G+           ED+ + +S L+K
Sbjct: 416 -AIGVRT---------EDIVNSVSKLEK 433

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 42/225 (18%)

Query: 37  KQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEI 96
           KQ +    G   Y  +G+     LE  + +L      +    G  A   ++ L     + 
Sbjct: 59  KQWAGMMIGDEAY--AGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQY 116

Query: 97  VAGDDLYGGTD-----------RLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTK 141
           VAG+  +  T             ++        + +      DL+++A+ I         
Sbjct: 117 VAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIA 176

Query: 142 LVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS----------------- 180
            + +    N          ++R + EMA  +G  +  D +                    
Sbjct: 177 YICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVS 236

Query: 181 -PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 224
              +   +   AD    S  K    +   + G L +  E +    
Sbjct: 237 IKDIVHEMFSYADGCTMSGKKDCLVN---IGGFLCMNDEEMFSAA 278

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 43/308 (13%), Positives = 91/308 (29%), Gaps = 15/308 (4%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY 103
                      P  D + + L K    D A        A  AV H L   +  V  D+  
Sbjct: 36  TTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENC 95

Query: 104 GGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW---------TKLVWVESPTNPRQQ 154
             +  + +        +V + +  D                      L  +  P      
Sbjct: 96  HYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN 155

Query: 155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA 214
           + D++KIA++   +   LLV+ +     +   L+      +  +       S    GV+ 
Sbjct: 156 LPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAAS-GPIGVMG 214

Query: 215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIA----EFLAS 270
           +K E     L   +  +   +    C      + T+       ++  ++      +    
Sbjct: 215 MKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRF 274

Query: 271 HPRVKKVNYAGLPEHP-GHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFG 329
              ++K+    L ++P  H+L +  A+    +     G        +++ K   I     
Sbjct: 275 AAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLT 334

Query: 330 SVKSLISM 337
               L + 
Sbjct: 335 RYFKLSTY 342

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 44/425 (10%), Positives = 97/425 (22%), Gaps = 68/425 (16%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
            P G      +    F+      +              A E   A++  AD+      G 
Sbjct: 32  HPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGS 91

Query: 81  AA--LAAVTHLLGTGEEIVAGDDLYGGTD---RLLSRVTPKTGVV-------VKRVNTCD 128
           +       + L+  G+ ++   + +         ++   P            +  +   D
Sbjct: 92  SNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSD 151

Query: 129 LDE-----------VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD-- 175
            DE              A       + V         I +  ++ +        +  D  
Sbjct: 152 FDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSA 211

Query: 176 ------------NSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223
                       NS    +     E    IV+ S  K  AG S      +  K   +  +
Sbjct: 212 WVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQ 269

Query: 224 LYF---------LQNAEGSGLAPFDCWICLRGVKTMAL-----RVEKQQDNAQKIAEFLA 269
           L +               +                                  +  + L 
Sbjct: 270 LRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLI 329

Query: 270 SHPRVKKVNYAGL-PEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS----I 324
               + +     +       +              F  G+   +       +Y+      
Sbjct: 330 KAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKF 389

Query: 325 TVS-FGSVKSLISMPCFMSHASIPVEVRQARGLTEDL-----VRISVGI----EDVNDLI 374
            ++  G          F   A+I     +  G+  +      +   +        +N+LI
Sbjct: 390 MLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLI 449

Query: 375 SDLDK 379
           + L +
Sbjct: 450 TQLLQ 454

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 23/165 (13%)

Query: 75  CFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV---KRVNTCDLD 130
               G  AL  +   +L  G+E++     +     ++         V    +     D +
Sbjct: 96  VTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPE 155

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--- 184
            V  AI P TK + V SP NP   +     +  +A +A  H   L+ D      +     
Sbjct: 156 RVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH 215

Query: 185 -RPLELGAD--IVMHSATK----------FIAGHSDVMAGVLAVK 216
             P  +  +  + ++ A K          +  G  +V+  + +V 
Sbjct: 216 FSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVS 260

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (117), Expect = 4e-07
 Identities = 19/167 (11%), Positives = 45/167 (26%), Gaps = 31/167 (18%)

Query: 38  QPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEI 96
             +A   G   +  SG+ +  AL   +  +      +    G  A    +  L+   E+ 
Sbjct: 59  MQAAMMRGDEAF--SGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE 116

Query: 97  VAGDDLYGGT-----------------------DRLLSRVTPKTGVVVKRVNTCDLDEVA 133
              D                                 +  T          +   L+   
Sbjct: 117 KGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176

Query: 134 SAIGPWTKLVWVESPTNPR-----QQICDIRKIAEMAHAHGALLLVD 175
             +GP      V + T+         + +++ +  +A  +   +++D
Sbjct: 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 31/187 (16%)

Query: 41  ATENGPYDYTRS-GNPT-RDALESLLAKL------DKADRALCFTSGMAALAAVTHLLGT 92
           A + G   Y  + G    R+A+   L K        K +  +   +  A L  ++  L  
Sbjct: 50  ALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKD 109

Query: 93  GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWV 145
           GEE++     +      +       G     V T        ++DE+   +   T+ + +
Sbjct: 110 GEEVLIPTPAFVSYAPAVIL----AGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALII 165

Query: 146 ESPTNPRQQIC---DIRKIAEMAHAHGALLLVD---------NSIMSPVLSRPLELGADI 193
            SP NP   +    D+ +IA+    H  +++ D         ++    + S        I
Sbjct: 166 NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTI 225

Query: 194 VMHSATK 200
            ++  +K
Sbjct: 226 TVNGFSK 232

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 45/323 (13%), Positives = 98/323 (30%), Gaps = 39/323 (12%)

Query: 80  MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVAS 134
           + A +     +  G+ I+     +         +  + G  ++ +      T  L+ + +
Sbjct: 99  LVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPT 158

Query: 135 AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADI 193
                T+L+ +   +N       + ++  +AH HGA +LVD +            L  D 
Sbjct: 159 LFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDF 218

Query: 194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV------ 247
            + S  K          G+L VK   L +   +                           
Sbjct: 219 YVFSGHKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA 275

Query: 248 ----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS 303
                   + +    +    +     +      ++YA        +L     +    V++
Sbjct: 276 GTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIA 335

Query: 304 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 363
           F  G    +  V      + I V  G             H ++P+       +   + R 
Sbjct: 336 FNLGKHH-AYDVGSFLDNYGIAVRTG------------HHCAMPLM--AYYNV-PAMCRA 379

Query: 364 SVGI----EDVNDLISDLDKALR 382
           S+ +    E+V+ L++ L +  R
Sbjct: 380 SLAMYNTHEEVDRLVTGLQRIHR 402

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 45/266 (16%), Positives = 77/266 (28%), Gaps = 32/266 (12%)

Query: 46  PYDYTRSGNPTRDALESLLAKL-------DKADRALCFTSG-----MAALAAVT-----H 88
            Y +    N     LE  + +L          DR + F  G        + +++      
Sbjct: 91  SYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTAT 150

Query: 89  LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 148
                 ++VA    Y    R  ++   K G V       +     +   P   +  V SP
Sbjct: 151 PDAPESKVVAHAPFYPVF-REQTKYFDKKGYVWAG----NAANYVNVSNPEQYIEMVTSP 205

Query: 149 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA-DIVMHSATKFIAGHSD 207
            NP   +         A   G   + D     P  +        DI++ + +K   GHS 
Sbjct: 206 NNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSK-FTGHSG 257

Query: 208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 267
              G   +K E +   L         G         L+ +K +   V+ Q+   + +  F
Sbjct: 258 SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF 317

Query: 268 LASHPR-VKKVNYAGLPEHPGHELHY 292
                R       A L +        
Sbjct: 318 GFKKLRERWVNITALLDQSDRFSYQE 343

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGT--GEEIVAGDDLYGGTDRL 109
           +  P    LE+   +L     A+  +S  A +      LG   G+E++     +  T  +
Sbjct: 28  TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM 87

Query: 110 LSRVTPKTGVVVKRVNTC--DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167
           +  +     +V    +T     + + +AI P TK +    P +      D+  I  +   
Sbjct: 88  IVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAII---PVHYAGAPADLDAIYALGER 144

Query: 168 HGALLLVD 175
           +G  ++ D
Sbjct: 145 YGIPVIED 152

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 30/268 (11%), Positives = 78/268 (29%), Gaps = 41/268 (15%)

Query: 38  QPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEI 96
           Q +A   G   Y   G+     L+    +L   D  +    G  A       LL   ++ 
Sbjct: 60  QWAAMITGDEAYA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKE 117

Query: 97  VAGDDLYGGTDR------------------LLSRVTPKTGVVVKRVNTCDLDEVASAIGP 138
               +    ++                   +++     +          D+ ++   I  
Sbjct: 118 GKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ 177

Query: 139 W----TKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDN------------SI 178
                   +      N          +++++ E+A  HG  +++D+              
Sbjct: 178 HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARD 237

Query: 179 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF 238
                +   E+  D+  ++    ++   D +  +  +   R  +E++ L       +  F
Sbjct: 238 PKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGF 297

Query: 239 DCWICLRGVKTMALRVEKQQDNAQKIAE 266
             +  L G    A+    ++   ++   
Sbjct: 298 VTYGGLAGRDMAAMVQGLEEGTEEEYLH 325

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 20/165 (12%)

Query: 35  TFKQPS-----ATENGPYDYTRSGN-PTRDALESLLAKLDKADRALCFTSGMAA-LAAVT 87
           T  +P+     A           G  PT + LE L A+    + AL   SG      ++ 
Sbjct: 8   TVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIM 67

Query: 88  HLLGTGEEIVAGDDLYGGTD---RLLSRVTPKTGVVVKRVNTCDLDEVASAI------GP 138
                G+E++   D +        +          V  +    D D+V  AI       P
Sbjct: 68  AHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFP 127

Query: 139 WTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM 179
            T L+ +E+  N          +I++I  +A  HG  + +D + +
Sbjct: 128 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 172

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 44/268 (16%), Positives = 91/268 (33%), Gaps = 41/268 (15%)

Query: 41  ATENGPYDYTRS-GNPT-RDALESLLAK---LDKADRALCFTSG--MAALAAVTHLLGTG 93
           A E G   Y  + G P  R+A+   L +   L      +  T+G   +    +  ++  G
Sbjct: 55  ALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPG 114

Query: 94  EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTKLVWVESPTN 150
           +E++     +     ++        ++   V T      +++  AI P TKL+   +P+N
Sbjct: 115 DEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSN 174

Query: 151 P---RQQICDIRKIAEMAHAHGALLLVDN----------SIMSPVLSRPLELGADIVMHS 197
           P        ++R IA++A   G  +L D             +S   + P      +V   
Sbjct: 175 PTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSG 234

Query: 198 ATK----------FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
             K          F+AG   ++     ++G   +    F Q                   
Sbjct: 235 FAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYG--------AIAAYENSQ 286

Query: 248 KTMALRVEKQQDNAQKIAEFLASHPRVK 275
             +   +    +  + + + L + P ++
Sbjct: 287 DCVQEMLAAFAERRRYMLDALNAMPGLE 314

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 26/115 (22%), Positives = 48/115 (41%)

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+     RAL F SG AA  AV   +   E+ +A D L   +    + ++P        
Sbjct: 92  LAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH 151

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178
            +   L  + ++  P  ++V  E   +       + +I ++   H   L+VD++ 
Sbjct: 152 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAH 206

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 127 CDLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVD 175
            DL  +  A+ P T+ + + +P NP   +    ++  IA +A AH   L+ D
Sbjct: 140 LDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISD 191

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 56/360 (15%), Positives = 107/360 (29%), Gaps = 52/360 (14%)

Query: 51  RSGNPTRDALE---SLLAKLDKADRA-LCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGT 106
             G      +E     +AK+     + + FTS                       +    
Sbjct: 37  GMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTP 96

Query: 107 DRLLSRVTP-----KTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNP---RQ 153
               + +         G  VK V         L+E+   +   T LV + +  N     Q
Sbjct: 97  IEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQ 156

Query: 154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL 213
            + D+ +I +  +    + +     +  +     +L  D    SA KF       +    
Sbjct: 157 PVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG--VGITY 214

Query: 214 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP- 272
             KG  +   ++      G      +    +   + M + VE+  + A+ + +  +    
Sbjct: 215 IRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVS 274

Query: 273 ---RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFG 329
               +       L     + L  S     GS L  L     LS +         I VS  
Sbjct: 275 GLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNL-----LSGY--------GIYVSTS 321

Query: 330 SVKSLISMPCFMSHASIPVEVRQARGLTEDL----VRISVGI----EDVNDLISDLDKAL 381
           S  +        S       V  A G+   +    +RIS+      E+V+  +  +++ L
Sbjct: 322 SACT--------SKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	386
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.98
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.98
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.97
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.97
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.97
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.97
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.96
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.96
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.96
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.96
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.96
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.96
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.96
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.95
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.95
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.95
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.95
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.95
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.95
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.95
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.94
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.94
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.94
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.94
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.94
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.94
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.94
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.93
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.93
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.93
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.92
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.91
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.91
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.9
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.9
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.89
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.88
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.88
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.87
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.86
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.85
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.84
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.81
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.81
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.81
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.81
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.81
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.81
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.8
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.8
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.79
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.75
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.74
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.72
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.72
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.72
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.71
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.69
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.65
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.64
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.62
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.6
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.58
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.57
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.56
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.53
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.53
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.52
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.51
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.5
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.49
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.46
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.44
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.43
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.42
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.63

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.8e-57  Score=412.65  Aligned_cols=379  Identities=85%  Similarity=1.284  Sum_probs=363.0

Q ss_pred             CccceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHH
Q 016612            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (386)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~   87 (386)
                      ..++++++.+...|++|.+.+|++++++|..++......+.|+|.|+|.++.+++.++.+.|.+.+++++||++|+.+++
T Consensus         2 ~~~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisall   81 (380)
T d1ibja_           2 SVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVT   81 (380)
T ss_dssp             CHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHH
T ss_pred             CHhHhhhcCCCCCCCCCCccCCccCCcceecCCCCccCCceeeCCCChHHHHHHHHHHHHcCCceEEehhhHHHHHHHHH
Confidence            45788999998899999999999999999998887788888999999999999999999999999999999999999889


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHH
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~  167 (386)
                      +++++||+|++.++.|+++...+.......|+++.+++..+.++++++++++|++|+++.|+||+..+.|+++|+++|++
T Consensus        82 ~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~  161 (380)
T d1ibja_          82 HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHA  161 (380)
T ss_dssp             TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHT
T ss_pred             HhhCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHH
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC
Q 016612          168 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (386)
Q Consensus       168 ~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (386)
                      +|+++|+|.+++.|...+|++.|+|+++.|++|+++|++.+++|.++.+++.+.+.+.......|..+++..++++.+++
T Consensus       162 ~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl  241 (380)
T d1ibja_         162 QGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI  241 (380)
T ss_dssp             TTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred             cCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999988888888888888899999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccC
Q 016612          248 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  327 (386)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~  327 (386)
                      +.+..|+++..+|+.++.++|++++.++.+++|+++++|.+.+.....++.+++++|.+.+.+.+.++++.++.+.+..+
T Consensus       242 ~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~S  321 (380)
T d1ibja_         242 KTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVS  321 (380)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSC
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcCeEeec
Confidence            99999999999999999999999999999999999999999999888888899999999988889999999999999999


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCCC
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  386 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~~  386 (386)
                      .|+..+++++|+.++|..++.+++...|+.+++||||+|.|+.+++++.|+++|+++|+
T Consensus       322 lG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l~~  380 (380)
T d1ibja_         322 FGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL  380 (380)
T ss_dssp             CCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred             cCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999875

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=4.7e-56  Score=405.20  Aligned_cols=382  Identities=40%  Similarity=0.686  Sum_probs=353.9

Q ss_pred             CCCCCccceeeccCCCC-CCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceE
Q 016612            4 EEEPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAL   74 (386)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i   74 (386)
                      .++.+++|++++.|..+ ++.|.+.||+++++++..++..        ....+.|+|.|+|.+..+++.++++.|.+.++
T Consensus         3 ~k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a~   82 (397)
T d1y4ia1           3 CRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGL   82 (397)
T ss_dssp             GGGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CCCCCccceeEeCCCCCCCCCCCccCCccCCCCeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCccce
Confidence            46789999999999765 4589999999999999876542        35567899999999999999999999999999


Q ss_pred             EeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCc
Q 016612           75 CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ  153 (386)
Q Consensus        75 ~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG  153 (386)
                      +++||++|+. ++++++++||+|++++..|+++...+...+.++|+++.+++..|+++++++++++|++|+++.|.||+.
T Consensus        83 ~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP~l  162 (397)
T d1y4ia1          83 ATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTL  162 (397)
T ss_dssp             EESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             eehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCCCCcEEEecCCcccce
Confidence            9999999986 677899999999999999999999888889999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHH-HHHHhhhhcC
Q 016612          154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEG  232 (386)
Q Consensus       154 ~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~-~~~~~~~~~~  232 (386)
                      .+.|+++|+++|+++|+++++|.+++.|.+..|.+.|+|+++.|++|+++|++.+.+|.++++++.+.+ ++...+...|
T Consensus       163 ~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G  242 (397)
T d1y4ia1         163 SLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITG  242 (397)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTC
T ss_pred             eecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcC
Confidence            999999999999999999999999999999999999999999999999999999999999998665544 2344556678


Q ss_pred             CCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHh
Q 016612          233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LAL  311 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~  311 (386)
                      ..+++..+|+++++++.+..|+++..+|+..+.++|++++.++.+++|+++++|++.++.++..+.|++++|.+.+ .+.
T Consensus       243 ~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~  322 (397)
T d1y4ia1         243 GCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEA  322 (397)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred             CcCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988888999999999954 556


Q ss_pred             HHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 016612          312 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  385 (386)
Q Consensus       312 ~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  385 (386)
                      +.+|++.++...+..+.|+..+++.+|+.++|..++++.+.+.|+.+++||+|+|.|+.+++++.|.++|+++.
T Consensus       323 ~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~a~  396 (397)
T d1y4ia1         323 GRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKAT  396 (397)
T ss_dssp             HHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEeccCCHHHHHHHHHHHHHHhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998753

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-55  Score=399.17  Aligned_cols=377  Identities=39%  Similarity=0.604  Sum_probs=356.2

Q ss_pred             CccceeeccCCCCC-CCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-H
Q 016612            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (386)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~   85 (386)
                      ++.|+.++.|+..+ ++|.+.||++++++|..++......+.|+|.|+|....+++.++++.|.+.+++++||++|+. +
T Consensus         2 k~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~   81 (384)
T d1cs1a_           2 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   81 (384)
T ss_dssp             CHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             ChhhheeeCCCCCCCCCCCccCCccCCCCeecCCCCcccCCcccCCCCHHHHHHHHHHHHHhCCCceEEecChHHHHHHH
Confidence            56788999997744 699999999999999988777777888999999999999999999999999999999999987 6


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la  165 (386)
                      +++++++||+|++++..|+++...+...+...|+++.+++..|.+++++.+.++|++|+++.|+||+..+.|+++|+++|
T Consensus        82 l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia  161 (384)
T d1cs1a_          82 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  161 (384)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHH
T ss_pred             HhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhccccccEEEEeccccccceeccHHHHhhhh
Confidence            67899999999999999999988888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      +++|+++|+|.+++.|.+.+|++.|+||++.|++|+++|++.+.+|+++++++.+.+.+.......|..+++..+|++.+
T Consensus       162 ~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~r  241 (384)
T d1cs1a_         162 REVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  241 (384)
T ss_dssp             HHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHH
T ss_pred             hhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhh
Confidence            99999999999999999999999999999999999999999999999999888887778888888889999999999999


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe-CCHHhHHHHHhhcCccee
Q 016612          246 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSI  324 (386)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~gi  324 (386)
                      +++.+..|+++..+|+..+.++|++++.++.+.+|+++++|++++..++..+.|++++|.+ .+.+.+.+|++.++.+.+
T Consensus       242 gL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~  321 (384)
T d1cs1a_         242 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTL  321 (384)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEE
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCccee
Confidence            9999999999999999999999999999999999999999999999888888999999998 566778899999999999


Q ss_pred             ccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          325 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       325 ~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ..+.|+..+++++|+.++|..++++.+...|+.+++||+|+|+|+.+++++.|+++|+++
T Consensus       322 a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa  381 (384)
T d1cs1a_         322 AESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  381 (384)
T ss_dssp             BSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999875

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=5e-56  Score=404.94  Aligned_cols=378  Identities=37%  Similarity=0.638  Sum_probs=326.9

Q ss_pred             CCccceeeccCCCCC-CCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeC
Q 016612            7 PGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (386)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (386)
                      ++++|+.++.|..++ ..|.+.||+++++++..++..        ....+.|+|.|+|.+..+|+.++++.|.+.+++++
T Consensus         2 ~g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~~   81 (392)
T d1gc0a_           2 PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALA   81 (392)
T ss_dssp             CCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             cCcchhceeCCCCCCCCCCCeeCCccCCCCEeeCCHHHHHHhhcCCcCCceecCCCChHHHHHHHHHHHHhCCcceeehh
Confidence            688999999996644 589999999999999876543        23446799999999999999999999999999999


Q ss_pred             cHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccc
Q 016612           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (386)
Q Consensus        78 ~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~  156 (386)
                      ||++|+. ++++++++||+|++++..|+++...+...++++|+++.+++..|+++++++++++|++|++++|+||+..+.
T Consensus        82 SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~  161 (392)
T d1gc0a_          82 SGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMA  161 (392)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             hHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCCCCeEEEecccccceeeec
Confidence            9999986 677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHH-HHHHhhhhcCCCC
Q 016612          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGL  235 (386)
Q Consensus       157 ~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~-~~~~~~~~~~~~~  235 (386)
                      |+++|+++|+++|+++++|.+++.|.+..|++.|+|+++.|++|+++|++.+.+|.++++++.+.+ ++...+...|..+
T Consensus       162 Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~  241 (392)
T d1gc0a_         162 DIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL  241 (392)
T ss_dssp             CHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCC
T ss_pred             chHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcC
Confidence            999999999999999999999999999999999999999999999999999999999998665544 3445566789999


Q ss_pred             ChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHH
Q 016612          236 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKH  314 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~  314 (386)
                      ++..+|+++++++.+..|+++..+|+..+.++|++++.++.+++|+++++|.+....+...+.|++++|.+. +.+...+
T Consensus       242 ~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~  321 (392)
T d1gc0a_         242 SPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRR  321 (392)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHH
T ss_pred             ChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988888888999999995 4566789


Q ss_pred             HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       315 l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      |++.++.+.+..++|+..+++++|+.++|..++++.+.+.|+.+++||||+|.|+.+++++.|.++|+++
T Consensus       322 f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~aa  391 (392)
T d1gc0a_         322 FMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  391 (392)
T ss_dssp             HHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCcceEeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeeeCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=5.7e-53  Score=386.49  Aligned_cols=377  Identities=37%  Similarity=0.661  Sum_probs=346.6

Q ss_pred             CccceeeccCCCCCCCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcH
Q 016612            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (386)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (386)
                      .++|+.++.|...+.+|.+.||++++++|..++..        ....+.|+|.|+|.+..+++.++++.|.+..++++||
T Consensus         4 ~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~sSG   83 (394)
T d1e5ea_           4 TPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSG   83 (394)
T ss_dssp             CHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred             CHHHHheeCCCCCCCCCCeeCCccCCCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCcceeeeccc
Confidence            56789999998888999999999999999876542        3456789999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccH
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l  158 (386)
                      ++|+. ++++++++||+|++++..|+++...+...+.++|+++.+++..|.+++++++++++++|+++.|.||+..+.|+
T Consensus        84 maAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di  163 (394)
T d1e5ea_          84 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDM  163 (394)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             hHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhcccccEEEEeccCCcceeeehh
Confidence            99987 67889999999999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-cCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHH-HHHhhhhcCCCCC
Q 016612          159 RKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGLA  236 (386)
Q Consensus       159 ~~i~~la~~-~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~-~~~~~~~~~~~~~  236 (386)
                      +++.+.+++ +|+++++|.+++.|.+.+|++.|+||++.|.+|+++|++.+.+|.++++++.+... ....+...|..++
T Consensus       164 ~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~ls  243 (394)
T d1e5ea_         164 ERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS  243 (394)
T ss_dssp             HHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCC
T ss_pred             hhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCC
Confidence            999887765 68999999999999999999999999999999999999999999999875544332 2234456788999


Q ss_pred             hhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHH
Q 016612          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHV  315 (386)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l  315 (386)
                      +..+|++.++++.+..|+++..+|+..+.++|++++.++.+++|+++++|++.+..++.++.|++++|.+.+ .+.+.++
T Consensus       244 p~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f  323 (394)
T d1e5ea_         244 PHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKL  323 (394)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHH
T ss_pred             hHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988888899999999855 4567899


Q ss_pred             HhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ++.++.+.+..+.|+..+++++|+.++|..++.+++...|+.+++||+|+|.|+.+++++.|.++|+++
T Consensus       324 ~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l  392 (394)
T d1e5ea_         324 LDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDAL  392 (394)
T ss_dssp             HHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHhCCccceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999864

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.9e-53  Score=384.91  Aligned_cols=381  Identities=41%  Similarity=0.689  Sum_probs=351.5

Q ss_pred             CCCCCCccceeeccCCCCCCCCCcccceeeeeeeecCCCC-CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcHHH
Q 016612            3 VEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMA   81 (386)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~gt~   81 (386)
                      ..+..+++|++++.|...+.+|.+.||++++++|..++.. ..+.+.|+|.|+|.++.+|+.++.+.|.+.+++++||++
T Consensus         2 ~~~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGma   81 (393)
T d1n8pa_           2 LQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSA   81 (393)
T ss_dssp             CCSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHH
T ss_pred             CCCCCCcchheEECCCCCCCCCCccCCcCCCCceecCCcccccCCeeeeCCCChHHHHHHHHHHHHhCCceEEEecCchh
Confidence            3567789999999997778899999999999999887654 345678999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHH
Q 016612           82 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (386)
Q Consensus        82 al~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i  161 (386)
                      |+.+++.++++||+|++++..|+++...+...+.++|+++.+++. +.+++++++++++++|+++.|.||+..+.|+++|
T Consensus        82 Ai~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~-~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~i  160 (393)
T d1n8pa_          82 TTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKV  160 (393)
T ss_dssp             HHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHH
T ss_pred             HHHhhhhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec-chHHHHHHhhhhcceeEecCcchhhhhccchhhh
Confidence            998888889999999999999999999999999999999999884 6689999999999999999999999999999999


Q ss_pred             HHHHH----HcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCCh
Q 016612          162 AEMAH----AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  237 (386)
Q Consensus       162 ~~la~----~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~  237 (386)
                      +++|+    ++|+++++|.+++.|...+|++.|+||++.|++|+++|++.+++|+++.+++.+.+.+.......|..+++
T Consensus       161 a~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p  240 (393)
T d1n8pa_         161 ADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP  240 (393)
T ss_dssp             HHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCH
T ss_pred             hhhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCCh
Confidence            99999    67899999999999999999999999999999999999999999999988888888888888889999999


Q ss_pred             hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhC-CCcceEecCCCCCCCchhhhhhccC--CCCceEEEEeC-CHHhHH
Q 016612          238 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLTG-SLALSK  313 (386)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~i~~~~~~--~~~~~~~~~~~-~~~~~~  313 (386)
                      ..+|+++++++.+..|+++..+|+..+.++|+++ +.+..+.+|++++++.+..+.....  +.|++++|.+. +.+.+.
T Consensus       241 ~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~  320 (393)
T d1n8pa_         241 FDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAAS  320 (393)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHH
T ss_pred             HHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHH
Confidence            9999999999999999999999999999999876 7799999999999999988765432  45889999994 667788


Q ss_pred             HHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          314 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       314 ~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      +|++.++.+....+.|+..+++++|+.++|..++.+.+...|+.+++||||+|+|+.+++++.|.++|+++
T Consensus       321 ~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~a  391 (393)
T d1n8pa_         321 KFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             HHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=4.8e-52  Score=379.28  Aligned_cols=374  Identities=32%  Similarity=0.555  Sum_probs=343.9

Q ss_pred             cceeeccCCCC--C-CCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCc
Q 016612           10 STLLMNFSNEF--D-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (386)
Q Consensus        10 ~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (386)
                      .|+.++.|...  + ..|++.||+++++++..++..        ....+.|+|.|+|....+++.++++.|.+.+++++|
T Consensus        11 ~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEgg~~a~~~sS   90 (398)
T d1qgna_          11 GSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMAS   90 (398)
T ss_dssp             HHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESC
T ss_pred             ccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhCCceEEEecC
Confidence            48899998542  2 479999999999999876542        356678999999999999999999999999999999


Q ss_pred             HHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHh-hhCCCceEEEEeCCCCCCcccc
Q 016612           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS-AIGPWTKLVWVESPTNPRQQIC  156 (386)
Q Consensus        79 gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~-~~~~~~~~v~~~~~~nptG~~~  156 (386)
                      |++|+. ++++++++||+|++++..|+++...+.......|+++.+++..+.++.++ .+.++|++|+++.|.||+..+.
T Consensus        91 GMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~  170 (398)
T d1qgna_          91 GMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCV  170 (398)
T ss_dssp             HHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCC
T ss_pred             cchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccccceEEEccCccccccccc
Confidence            999987 67779999999999999999999999999999999999999777666554 5568999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCC
Q 016612          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (386)
Q Consensus       157 ~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~  236 (386)
                      |+++|+++|+++|+++++|.+++.|...+|++.|+|+++.|++|+++|++.+++|.+..+ +.+...+.......|..++
T Consensus       171 Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~-~~~~~~~~~~~~~~G~~l~  249 (398)
T d1qgna_         171 DIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGP-LKLVSEIRNLHHILGGALN  249 (398)
T ss_dssp             CHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEEC-HHHHHHHHHHHHHHCCCCC
T ss_pred             hHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcch-hhhhhhhhhhcccCCCcCC
Confidence            999999999999999999999999999999999999999999999999999999988765 5566667777788899999


Q ss_pred             hhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC-CHHhHHHH
Q 016612          237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHV  315 (386)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l  315 (386)
                      +..+++++++++.+..|+++..+|+..+.++|++++.++.+.+|+|+++|++.++.++..+.|++++|.+. +.+.+.+|
T Consensus       250 p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f  329 (398)
T d1qgna_         250 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKF  329 (398)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHH
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888999999999984 67788999


Q ss_pred             HhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       316 ~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ++.++......+.|+..+++++|+.++|..++.+.+.+.|+.+++||+|+|+|+.+++++.|+++|+++
T Consensus       330 ~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         330 VDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  398 (398)
T ss_dssp             HHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             HHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999864

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.9e-51  Score=377.48  Aligned_cols=374  Identities=33%  Similarity=0.493  Sum_probs=334.3

Q ss_pred             ccceeeccCCCCC-CCCCcccceeeeeeeecCCCC--------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeCcH
Q 016612            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (386)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (386)
                      ++|+.++.|..++ ..|.+.||+++++++..++..        ....+.|+|.|+|.+..+++.++++.|.+.+++++||
T Consensus         3 ~~T~~vh~g~~~~~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~SG   82 (421)
T d2ctza1           3 FETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASG   82 (421)
T ss_dssp             HHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred             hhHhheeCCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEecCh
Confidence            6788999996655 489999999999999875432        2445679999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCC-HHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-LDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        80 t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d-~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                      ++|+. ++++++++||+|++++..|+++...+...+.++|+++.+++..+ .+..++.++++|++|+++.|.||+..+.|
T Consensus        83 maAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D  162 (421)
T d2ctza1          83 HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPD  162 (421)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCCCceEEEEcCCCcceeEecc
Confidence            99986 67889999999999999999999999899999999999998765 46667778899999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCCC-CCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHH---------------
Q 016612          158 IRKIAEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA---------------  221 (386)
Q Consensus       158 l~~i~~la~~~~~~li~D~a~~-~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~---------------  221 (386)
                      +++|+++|+++|+++++|.+++ .|....|++.|+||++.|++|+++|++.+.+|+++.+++..+               
T Consensus       163 i~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~  242 (421)
T d2ctza1         163 LEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY  242 (421)
T ss_dssp             HHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGG
T ss_pred             hHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhh
Confidence            9999999999999999999998 688889999999999999999999999999999998653211               


Q ss_pred             ----------------HHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCC
Q 016612          222 ----------------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  285 (386)
Q Consensus       222 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  285 (386)
                                      +.........|..+++..+|+++++++.+..|++++.+|+..+.++|++++.++.+++|+++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~  322 (421)
T d2ctza1         243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHH  322 (421)
T ss_dssp             TTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTC
T ss_pred             hhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCC
Confidence                            1111122346889999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhhccC-CCCceEEEEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 016612          286 PGHELHYSQAK-GAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  363 (386)
Q Consensus       286 ~~~~i~~~~~~-~~~~~~~~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  363 (386)
                      |++.++.++.. +.|++++|.+. +.+.+.+|++.++.+....+.|+..+++++|+..+|..++++.+...|+.+++||+
T Consensus       323 p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRl  402 (421)
T d2ctza1         323 PHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRL  402 (421)
T ss_dssp             TTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEE
T ss_pred             ccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEE
Confidence            99998776655 46889999995 55668899999999999999999999999999999999999999999999999999


Q ss_pred             EeccCChHHHHHHHHHHHh
Q 016612          364 SVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       364 s~~~~~~~~~i~~l~~~l~  382 (386)
                      |+|.|+.+++++.|.++|.
T Consensus       403 SvGlEd~eDLi~DL~qALa  421 (421)
T d2ctza1         403 SVGLEHVEDLKAELKEALA  421 (421)
T ss_dssp             ECCSSCHHHHHHHHHHHTC
T ss_pred             EeccCCHHHHHHHHHHhcC
Confidence            9999999999999999973

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-51  Score=372.26  Aligned_cols=374  Identities=26%  Similarity=0.432  Sum_probs=337.6

Q ss_pred             CccceeeccCCCCC-CCCCcccceeeeeeeecCCCC---------CCCCccccCCCCchHHHHHHHHHhhcCCCceEEeC
Q 016612            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT---------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (386)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~---------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (386)
                      +++|++++.|..++ .+|.+.||+++++++..++..         ..+.+.|+|.|+|.+..+++.++++.|.+.+++++
T Consensus         1 k~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~   80 (391)
T d1cl1a_           1 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP   80 (391)
T ss_dssp             CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CcccceecCCCCCCCCCCCccCCeeCCCceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEEec
Confidence            46788999997655 589999999999999876542         23356799999999999999999999999999999


Q ss_pred             cHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccc
Q 016612           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (386)
Q Consensus        78 ~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~  156 (386)
                      ||++|+. ++++++++||+|++++..|+++...+...+...|+++.+++..|.+++++++++++++|+++.|.||+..+.
T Consensus        81 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~  160 (391)
T d1cl1a_          81 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH  160 (391)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCC
T ss_pred             cccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCccccccccccccccceeeecccCccccccc
Confidence            9999986 678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHc--CCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCC
Q 016612          157 DIRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (386)
Q Consensus       157 ~l~~i~~la~~~--~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~  234 (386)
                      |+++|+++|+++  |+++++|.+++.|.+.+|++.|+|+++.|++|+++|++.+++|.++.+++ +...+.......|..
T Consensus       161 Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~-~~~~~~~~~~~~G~~  239 (391)
T d1cl1a_         161 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQM  239 (391)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCC
T ss_pred             ccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceecccc-ccccchhhhhccccc
Confidence            999999999775  99999999999999999999999999999999999999999999988654 555566667778889


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC---CHHh
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLAL  311 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~  311 (386)
                      +++..+|++.++++.+..|+++..+|+..+.++|++++.+..+.+++++++|.+.++..+.++.+++++|.+.   +.+.
T Consensus       240 ~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~  319 (391)
T d1cl1a_         240 VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEE  319 (391)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHH
T ss_pred             CCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999998888888999999984   4456


Q ss_pred             HHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          312 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       312 ~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ..++++.++.+....+.|+..+++++|...++.....+  ...|+.+++||+|+|+|+.+++++.|+++|+++
T Consensus       320 ~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~--~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         320 LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ--GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  390 (391)
T ss_dssp             HHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTT--CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCcceEeeCCCCCccceeCCcccccccCCch--HhcCCCcCEEEEEeccCCHHHHHHHHHHHHHhh
Confidence            77899999999999999999999998887666554432  345888999999999999999999999999875

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=100.00  E-value=5.8e-48  Score=346.35  Aligned_cols=326  Identities=41%  Similarity=0.679  Sum_probs=305.2

Q ss_pred             HHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC
Q 016612           59 ALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG  137 (386)
Q Consensus        59 ~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~  137 (386)
                      ++|+.++++.|.+..++++||++|+. ++++++++||+|++++..|+++...+...++++|+++.+++..|.+.++++++
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~   81 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence            68999999999999999999999986 67889999999999999999999999888999999999999999999999999


Q ss_pred             CCceEEEEeCCCCCCcccccHHHHHHHH-HHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccCCCceEEEEEEc
Q 016612          138 PWTKLVWVESPTNPRQQICDIRKIAEMA-HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (386)
Q Consensus       138 ~~~~~v~~~~~~nptG~~~~l~~i~~la-~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~  216 (386)
                      ++|++|+++.|.||+..+.|++.+.+++ +++|+++|+|.+++.|...+|++.|+|+++.|++|+++|++.+++|.++.+
T Consensus        82 ~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~  161 (331)
T d1pffa_          82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSR  161 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEEC
T ss_pred             cccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCcccccccccc
Confidence            9999999999999999999999999885 568999999999999999999999999999999999999999999999998


Q ss_pred             ChhHHHHH-HHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhcc
Q 016612          217 GERLAKEL-YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  295 (386)
Q Consensus       217 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~  295 (386)
                      ++...+.. .......|..+++..++++.++++.+..|+++..+|+..+.++|++++.++++.+|+++++|.+.+..++.
T Consensus       162 ~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~  241 (331)
T d1pffa_         162 ADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM  241 (331)
T ss_dssp             HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC
T ss_pred             ccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcc
Confidence            65544422 22345668899999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHH
Q 016612          296 KGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS  375 (386)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~  375 (386)
                      .+.|++++|.+++.+...++++.++.+.+..+.|+..+++.+|+.++|..++.+.+...|+.+++||+|+|.|+.+++++
T Consensus       242 ~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGlE~~~DLi~  321 (331)
T d1pffa_         242 KMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIID  321 (331)
T ss_dssp             SSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHH
T ss_pred             cccCcccceeeccHHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeeeCCHHHHHH
Confidence            88999999999888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 016612          376 DLDKALRTG  384 (386)
Q Consensus       376 ~l~~~l~~~  384 (386)
                      .|+++|++.
T Consensus       322 Dl~~AL~~i  330 (331)
T d1pffa_         322 DLKQALDLV  330 (331)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999999875

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.98  E-value=1.6e-31  Score=247.92  Aligned_cols=321  Identities=17%  Similarity=0.223  Sum_probs=211.4

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcH-HHHHHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALAA   85 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-t~al~~   85 (386)
                      .+++++.++..|+. ++.+.++.  .  ++.+.+.++|++. |.+ +|+++.+++.+.+|..   +.|++++| ++++..
T Consensus        31 ~vi~l~~G~p~~~~-p~~v~~a~--~--~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~  105 (388)
T d1j32a_          31 DVCSFSAGEPDFNT-PKHIVEAA--K--AALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN  105 (388)
T ss_dssp             CCEECCCSSCSSCC-CHHHHHHH--H--HHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred             CeEECCCCCCCCCC-CHHHHHHH--H--HHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHH
Confidence            46888866555542 22222221  1  1112355679887 887 8999999998887654   45555555 599874


Q ss_pred             -HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           86 -VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        86 -~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                       +.++++|||.|++++|+|+.+.    ..++..|.+++.++..       |++++++.++++++++++++|+||||.+++
T Consensus       106 ~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~  181 (388)
T d1j32a_         106 LMLAMIEPGDEVIIPAPFWVSYP----EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYT  181 (388)
T ss_dssp             HHHHHCCTTCEEEEESSCCTHHH----HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHhCCCCEEEEcCCCcHHHH----HHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccc
Confidence             5568999999999999999886    4445677777777753       799999999999999999999999999986


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCCCCCCccCC-----CC-----CCccEEEeccccccccCCCceEEEEEEcChhHHHHH
Q 016612          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----LE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (386)
Q Consensus       158 ---l~~i~~la~~~~~~li~D~a~~~~~~~~~-----~~-----~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~  224 (386)
                         +++|.++|+++|++||+||+|+...+...     ..     .+..+++.|+||.+ +.+|+|+||+++++ .+.+.+
T Consensus       182 ~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~-~~~GlRvG~~~~~~-~~~~~~  259 (388)
T d1j32a_         182 PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPV-PLVKAA  259 (388)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCH-HHHHHH
T ss_pred             hhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh-hcchhHeEEEEECH-HHHHHH
Confidence               78899999999999999999864332211     11     13579999999999 55689999999874 455545


Q ss_pred             HHhhhhcCCCCChhhHHHHHhc----CCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCc
Q 016612          225 YFLQNAEGSGLAPFDCWICLRG----VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  300 (386)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~  300 (386)
                      ...........+...+.++...    .+.+......+.++.+.+.+.+++.+        ++.      +.  .+ ..+.
T Consensus       260 ~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------g~~------~~--~p-~gg~  322 (388)
T d1j32a_         260 TKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMP--------GLE------CP--KP-DGAF  322 (388)
T ss_dssp             HHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCT--------TCB------CC--CC-CBTT
T ss_pred             HHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCE------ec--CC-CceE
Confidence            4444444444455444433222    22334445556666666667666543        111      11  11 1244


Q ss_pred             eEEEEeCCH-HhHHHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHH
Q 016612          301 VLSFLTGSL-ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISD  376 (386)
Q Consensus       301 ~~~~~~~~~-~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~  376 (386)
                      ++++.++.. ....++.+++ ...|+.+.+|..+.                       .++++|+|++.  +++++.+++
T Consensus       323 ~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~-----------------------~~~~~Rls~~~~~e~l~~al~r  379 (388)
T d1j32a_         323 YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-----------------------ADDCIRLSYATDLDTIKRGMER  379 (388)
T ss_dssp             EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTBEEEECCSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccC-----------------------CCCeEEEEEeCCHHHHHHHHHH
Confidence            455555321 1222333332 34577777776521                       25789999974  666778888


Q ss_pred             HHHHHhc
Q 016612          377 LDKALRT  383 (386)
Q Consensus       377 l~~~l~~  383 (386)
                      |+++|+.
T Consensus       380 l~~~l~~  386 (388)
T d1j32a_         380 LEKFLHG  386 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=1e-31  Score=248.96  Aligned_cols=316  Identities=18%  Similarity=0.228  Sum_probs=203.5

Q ss_pred             eeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcH-HHHHH-H
Q 016612           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-A   85 (386)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-t~al~-~   85 (386)
                      +++++.++..|+. ++.+.++.  .  ++...+.++|++. |.+ +|+++.+++.+..|.+   +.+++++| ++++. +
T Consensus        33 vi~l~~g~p~~~~-p~~i~~a~--~--~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~  107 (382)
T d1b5pa_          33 LVALTAGEPDFDT-PEHVKEAA--R--RALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL  107 (382)
T ss_dssp             CEECCCSSCSSCC-CHHHHHHH--H--HHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred             eEECCCCCCCCCC-CHHHHHHH--H--HHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHH
Confidence            6778866555542 22222221  1  1122456789887 887 8999999998877653   44445555 58887 5


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc-
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD-  157 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~-  157 (386)
                      +.+++++||.|++++|+|+.+.    ..++..|.+++.++..       |++++++.++++++++++++||||||.+++ 
T Consensus       108 ~~~l~~~gd~vl~~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~  183 (382)
T d1b5pa_         108 FQAILDPGDEVIVLSPYWVSYP----EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK  183 (382)
T ss_dssp             HHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHhCCCCCEEEECCCCcHHHH----HHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCH
Confidence            5668999999999999999886    4556788888888753       899999999999999999999999999985 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCCCCCCCcc----CC--CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh
Q 016612          158 --IRKIAEMAHAHGALLLVDNSIMSPVLS----RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (386)
Q Consensus       158 --l~~i~~la~~~~~~li~D~a~~~~~~~----~~--~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~  229 (386)
                        +++|+++|++||++||+||+|+.-.+.    .+  ...+..+++.|+||.+ +.+|+|+||+++++ .+.+.+.....
T Consensus       184 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~GlR~G~~~~~~-~~i~~~~~~~~  261 (382)
T d1b5pa_         184 EVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGPK-EVIKAMASVSR  261 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTT-TCGGGCCEEEECCH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhc-cCcHhheEEEEECH-HHHHHHHHHHH
Confidence              788999999999999999998743221    11  1225679999999999 55689999999864 45555555544


Q ss_pred             hcCCCCChhhHHHHHhcCCc---H----HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceE
Q 016612          230 AEGSGLAPFDCWICLRGVKT---M----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  302 (386)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  302 (386)
                      ......+...+......+..   .    ....+.+.++.+.+.+.+.+..         +...        .+. .|.++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---------~~~~--------~p~-gg~~~  323 (382)
T d1b5pa_         262 QSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG---------LKAV--------RPS-GAFYV  323 (382)
T ss_dssp             TTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------CCBC--------CCS-BTTEE
T ss_pred             hcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcC---------CeEe--------cCC-ceEEE
Confidence            44444444444333222211   1    1111222223333333333221         1111        112 25566


Q ss_pred             EEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHH
Q 016612          303 SFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDK  379 (386)
Q Consensus       303 ~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~  379 (386)
                      ++.+.. ......+.+.+...|+.+.+|..+.                       .++++||+++.  +++++.+++|++
T Consensus       324 ~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~-----------------------~~~~iRis~~~~~e~l~~al~rl~~  380 (382)
T d1b5pa_         324 LMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA-----------------------AFGHVRLSYATSEENLRKALERFAR  380 (382)
T ss_dssp             EEECTTTCSSHHHHHHHHHHTTEECEESGGGT-----------------------CTTEEEEECCSCHHHHHHHHHHGGG
T ss_pred             eEeCCCCCCCHHHHHHHHHHCCEEEEeCcccC-----------------------CCCeEEEEEcCCHHHHHHHHHHHHH
Confidence            777732 2235556666667788888876532                       25789999974  333444444444


Q ss_pred             H
Q 016612          380 A  380 (386)
Q Consensus       380 ~  380 (386)
                      +
T Consensus       381 ~  381 (382)
T d1b5pa_         381 V  381 (382)
T ss_dssp             G
T ss_pred             h
Confidence            3

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=5e-31  Score=244.97  Aligned_cols=323  Identities=16%  Similarity=0.181  Sum_probs=209.3

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCC----CceEEeCcH-HHHHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSG-MAALA   84 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g-t~al~   84 (386)
                      .+++++.++..++. ++.+.++..    ++.+.+.++|++. |.+ +|+++.+++.+..+.    ++.|++++| ++++.
T Consensus        26 dvi~l~~g~p~~~~-p~~v~~~~~----~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~  100 (388)
T d1gdea_          26 DVISLGIGEPDFDT-PQHIKEYAK----EALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFL  100 (388)
T ss_dssp             TCEECCCCSCCSCC-CHHHHHHHH----HHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHH
T ss_pred             CeEECCCCCCCCCC-CHHHHHHHH----HHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHH
Confidence            36888866554442 222222111    1112345679887 886 899999888775543    234555555 58887


Q ss_pred             H-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCcccc
Q 016612           85 A-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (386)
Q Consensus        85 ~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~  156 (386)
                      . +.++++|||.|++++|+|+.+.    ..++..|.+++.++..       |++++++.++++++++++++||||||.+.
T Consensus       101 ~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~  176 (388)
T d1gdea_         101 MGLSAFLKDGEEVLIPTPAFVSYA----PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVL  176 (388)
T ss_dssp             HHHTTTCCTTCEEEEEESCCTTHH----HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHhcCCCCEEEECCCCcHHHH----HHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcC
Confidence            4 5568999999999999999986    4556788899888763       89999999999999999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHH
Q 016612          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (386)
Q Consensus       157 ~---l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~  224 (386)
                      +   +++|.++|++++++||+||+|+.....     ...    ..+.++++.|+||.+ +.+|+|+||++++++ +.+.+
T Consensus       177 s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~ii~~~~-~~~~~  254 (388)
T d1gdea_         177 TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAPSW-IIERM  254 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECCHH-HHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhc-cCccccEEEEEeecc-chhhh
Confidence            5   788999999999999999998743221     111    124679999999998 556899999998754 44444


Q ss_pred             HHhhhhcCCCCChhhHHHHHhcCCcH------HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC
Q 016612          225 YFLQNAEGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  298 (386)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~  298 (386)
                      ...........+...+.+....+...      ......+.++...+.+.+....         +...        . +..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~--------~-p~g  316 (388)
T d1gdea_         255 VKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG---------LPTV--------K-PKG  316 (388)
T ss_dssp             HHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CCCC--------C-CCB
T ss_pred             hhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhcc---------cccc--------C-CCc
Confidence            44444444455555544444433321      1122222333333444444321         1111        1 122


Q ss_pred             CceEEEEeCC-HHhHHHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHH
Q 016612          299 GSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLI  374 (386)
Q Consensus       299 ~~~~~~~~~~-~~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i  374 (386)
                      +.++++.+++ ....+++.+.+ +..|+.+.+|..+..                     ..++++|||++.  +++++.+
T Consensus       317 g~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~---------------------~~~~~iRis~~~~~e~l~~al  375 (388)
T d1gdea_         317 AFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK---------------------AGEGYVRISYATAYEKLEEAM  375 (388)
T ss_dssp             TTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG---------------------GGTTBEEEECCSCHHHHHHHH
T ss_pred             eEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCC---------------------CCCCEEEEEecCCHHHHHHHH
Confidence            4556666642 12244444433 345787777765321                     136789999973  6678889


Q ss_pred             HHHHHHHhcC
Q 016612          375 SDLDKALRTG  384 (386)
Q Consensus       375 ~~l~~~l~~~  384 (386)
                      ++|+++|++.
T Consensus       376 ~rL~~~l~e~  385 (388)
T d1gdea_         376 DRMERVLKER  385 (388)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.5e-29  Score=232.29  Aligned_cols=317  Identities=17%  Similarity=0.202  Sum_probs=210.8

Q ss_pred             eeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcHHHHHH-H
Q 016612           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAALA-A   85 (386)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~gt~al~-~   85 (386)
                      +++++.++..++. ++.+.++  ...  ....+.++|++. |.+ +|+++.+++.+..|.+    +.++++++++++. +
T Consensus        30 vI~l~~G~p~~~~-p~~i~~~--~~~--~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~  104 (375)
T d1o4sa_          30 VINLTAGEPDFPT-PEPVVEE--AVR--FLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA  104 (375)
T ss_dssp             CEECCCSSCSSCC-CHHHHHH--HHH--HHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred             eEECCCcCCCCCC-CHHHHHH--HHH--HHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHH
Confidence            6788877665552 2222221  111  122455779888 887 8999999998877653    4555666669987 5


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc-
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD-  157 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~-  157 (386)
                      +.+++++||.|++++|.|+.+..    .....+.....++..       +.+.++....++++++++++|+||||.+.+ 
T Consensus       105 ~~~l~~~gd~vlv~~P~y~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~  180 (375)
T d1o4sa_         105 FMALLDPGDEVIVFSPVWVSYIP----QIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR  180 (375)
T ss_dssp             HHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHhCCCCEEEEccCccccchh----hhhccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCCH
Confidence            66689999999999999998863    344566666666543       778888888899999999999999999985 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCCCCCCCcc--------CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh
Q 016612          158 --IRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (386)
Q Consensus       158 --l~~i~~la~~~~~~li~D~a~~~~~~~--------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~  227 (386)
                        +++|.++|++|+++||+||+|......        .....+..+++.|+||.+ +.+|+|+||++++++ +.+.....
T Consensus       181 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~G~R~G~~~~~~~-~~~~~~~~  258 (375)
T d1o4sa_         181 EFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSEK-VATAVSKI  258 (375)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCHH-HHHHHHHH
T ss_pred             HHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhc-cCCcccccccccccc-chhhhhhh
Confidence              788999999999999999998743322        122346789999999998 556899999998755 44444444


Q ss_pred             hhhcCCCCChhhHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEe
Q 016612          228 QNAEGSGLAPFDCWICLRGVK-TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  306 (386)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~  306 (386)
                      ....................+ ......+.+.++.+.+.+.+++..         +...        .+. .+.++|+.+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g---------~~~~--------~p~-gg~f~~~~~  320 (375)
T d1o4sa_         259 QSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMG---------VKFV--------EPE-GAFYLFFKV  320 (375)
T ss_dssp             HHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTT---------CCCC--------CCS-BSSEEEEEC
T ss_pred             hccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhcC---------ceEe--------cCC-ccEEEEEEC
Confidence            333334444444433333222 223344455566666666666542         2211        111 256677777


Q ss_pred             CCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 016612          307 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  382 (386)
Q Consensus       307 ~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  382 (386)
                      +..+ .+.+.+.++..|+.+.+|..+.                       .+++||||++.  +++++.+++|+++|+
T Consensus       321 ~~~~-~~~~~~ll~~~gV~v~pG~~F~-----------------------~~g~iRis~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         321 RGDD-VKFCERLLEEKKVALVPGSAFL-----------------------KPGFVRLSFATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             SSCH-HHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             CCCH-HHHHHHHHHhCCEEEEEccccC-----------------------CCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            5432 3333333455688777776521                       36789999974  666777888888775

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.97  E-value=2.6e-29  Score=233.45  Aligned_cols=296  Identities=16%  Similarity=0.133  Sum_probs=196.8

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEE-eCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALC-FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~-~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      .+.++|++. |.+ +|+++.+++.+.+|.+   +.++ ++++++++. ++..++++||.|++++|+|+.+.    ..++.
T Consensus        61 ~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~----~~~~~  136 (395)
T d1xi9a_          61 EGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYT----GLVKF  136 (395)
T ss_dssp             TTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHH
T ss_pred             cCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccch----hhhhh
Confidence            455679888 887 8999999999888764   4454 444558886 55668999999999999998875    55667


Q ss_pred             CCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC-
Q 016612          117 TGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-  185 (386)
Q Consensus       117 ~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~-  185 (386)
                      .|.+++.++..       |++++++.+.++++++++++||||||.+.+   +++|+++|++++++||.|++|....+.. 
T Consensus       137 ~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~  216 (395)
T d1xi9a_         137 YGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE  216 (395)
T ss_dssp             TTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC
T ss_pred             cCCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccccccc
Confidence            88888877642       889999999999999999999999999986   7889999999999999999987433221 


Q ss_pred             ------CCCCCccEEEeccccccccCCCceEEEEEEcCh-hH----HHHHHHhhhhcCCCCChhhHHHHHh----cCCcH
Q 016612          186 ------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-RL----AKELYFLQNAEGSGLAPFDCWICLR----GVKTM  250 (386)
Q Consensus       186 ------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  250 (386)
                            .......+++.|+||.++ .+|+|+||+++... ..    .+......... ...+...+.++..    ..+.+
T Consensus       217 ~~~~~~~~~~~~vi~~~S~SK~~~-~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~a~~~~l~~~~~~~  294 (395)
T d1xi9a_         217 HISPGSLTKDVPVIVMNGLSKVYF-ATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYL  294 (395)
T ss_dssp             CCCHHHHCSSSCEEEEEESTTTTC-CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHH
T ss_pred             ccchhhcCCCCCEEEEeCcchhcc-cchhhcEeeEecCHHHHHHHHHHHHHHhhcCC-CCcCHHHHHHHHHHhcCCHHHH
Confidence                  112346799999999994 45899999876532 21    22222222222 2223333332222    22234


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC---HHhHHHHHhhcCcceeccC
Q 016612          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKHVVETTKYFSITVS  327 (386)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~gi~~~  327 (386)
                      ....+.+.++.+.+.+.|++.+.+   ...             .+. .+.++++.++.   .+..+.+.+.++..|+.+.
T Consensus       295 ~~~~~~~~~~~~~l~~~L~~~~~~---~~~-------------~p~-gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~  357 (395)
T d1xi9a_         295 KEYMKKLKERRDYIYKRLNEIPGI---STT-------------KPQ-GAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFV  357 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTE---ECC-------------CCC-BSSEECCEECSCSCSSHHHHHHHHHHHHCEECE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCc---eec-------------CCC-eeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEE
Confidence            444556667777777777765311   110             111 25556666632   1212222333445577777


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHhc
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALRT  383 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~~  383 (386)
                      +|..+..                     ..++++|||++  .+.+++.+++|+++|++
T Consensus       358 PG~~Fg~---------------------~~~~~~Ris~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         358 HGSGFGE---------------------YGAGHFRAVFLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             EGGGGCG---------------------GGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             cChhhCC---------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            7765321                     13678999996  36667788888888864

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.97  E-value=2.2e-29  Score=235.48  Aligned_cols=296  Identities=15%  Similarity=0.117  Sum_probs=190.2

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcCC----------CceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHH
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDKA----------DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLL  110 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----------~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~  110 (386)
                      ...++|++. |.| +|+++.+++.+.++.          +++++++++++++. ++.+++++||.|++++|+|+.+.   
T Consensus        63 ~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~---  139 (412)
T d1bw0a_          63 QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYE---  139 (412)
T ss_dssp             TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH---
T ss_pred             CCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhh---
Confidence            455689988 887 899999999877532          23444554559887 56678999999999999999885   


Q ss_pred             hhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          111 SRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       111 ~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                       .+++..|.+++.++++       +++++++...++++++++++|+||||.+.+   +++|.++|++++++||+||+|..
T Consensus       140 -~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~  218 (412)
T d1bw0a_         140 -TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG  218 (412)
T ss_dssp             -HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT
T ss_pred             -hhhhccCccccccccccccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeeechhhHHH
Confidence             5566789999888753       788999999999999999999999999985   78899999999999999999863


Q ss_pred             CCccC------------CCCCCccEEEeccccccccCCCceEEEEEEcChhH-----HHHHHHhhhhcCCCCChhhHHHH
Q 016612          181 PVLSR------------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-----AKELYFLQNAEGSGLAPFDCWIC  243 (386)
Q Consensus       181 ~~~~~------------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  243 (386)
                      -.+..            .......+++.|+||.+ +.+|+|+||++++++..     ..................++.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (412)
T d1bw0a_         219 MVFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALG  297 (412)
T ss_dssp             CBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred             hccCCCCCccccccccccccccccccccccCccC-ccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhcc
Confidence            22210            01112357888999999 45689999999875422     22222222222222222222222


Q ss_pred             HhcCC----cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-----HHhHHH
Q 016612          244 LRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LALSKH  314 (386)
Q Consensus       244 ~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~  314 (386)
                      .....    .+....+.+.++.+.+.+.+.+..              ++.+.  .+ ..|.+++..++.     .....+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~--------------g~~~~--~p-~gg~~l~~~~~~~~~~~~~~~~~  360 (412)
T d1bw0a_         298 EALLNTPQEHLDQIVAKIEESAMYLYNHIGECI--------------GLAPT--MP-RGAMYLMSRIDLEKYRDIKTDVE  360 (412)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTST--------------TEEEC--CC-CBTTEEEEEECGGGBSSCCSHHH
T ss_pred             cccccccccccccccchhHHHHHHHHHHHHHhc--------------Cceec--CC-CCceEEEEeCChhhcCCCCCHHH
Confidence            22111    122333334444444555554432              21111  11 124445555531     112333


Q ss_pred             HHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          315 VVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       315 l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      +.+.+ ...|+.+.+|..+.                       .+++||||++.  +++++.+++|+++|++.
T Consensus       361 ~~~~ll~~~gV~v~PG~~Fg-----------------------~~g~iRis~~~~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         361 FFEKLLEEENVQVLPGTIFH-----------------------APGFTRLTTTRPVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             HHHHHHHHHCEECEEGGGGT-----------------------CTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEeccccC-----------------------CCCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            33333 33477776766421                       25789999964  66777788888888763

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.96  E-value=2e-28  Score=227.56  Aligned_cols=298  Identities=12%  Similarity=0.094  Sum_probs=191.6

Q ss_pred             CCCccccCCCCc-hHHHHHHHHHhhcCCC----ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           44 NGPYDYTRSGNP-TRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        44 ~~~~~y~~~g~~-~~~~l~~~l~~~~g~~----~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      .+.++|.+ |.+ +|+++.+++++.+|.+    ++++++++++++. ++.++++|||.|+++.|.|.++.    ......
T Consensus        59 ~~~~~Y~~-g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~----~~~~~~  133 (394)
T d1c7na_          59 ETVLGYTG-PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFF----MAIKNQ  133 (394)
T ss_dssp             HCCCSSBC-CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHH----HHHHTT
T ss_pred             CCCcCCCC-CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchh----hHHhhh
Confidence            34567754 555 7999999998887764    4555555569987 56779999999999999998885    455577


Q ss_pred             CcEEEEeCCC--------CHHHHHhhhC-CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC
Q 016612          118 GVVVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR  185 (386)
Q Consensus       118 g~~~~~v~~~--------d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~  185 (386)
                      |...+.++..        |.+.++..+. ++++++++++||||||.+.+   +++|+++|++++++||+||+|..-.+..
T Consensus       134 g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~  213 (394)
T d1c7na_         134 ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPG  213 (394)
T ss_dssp             TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTT
T ss_pred             hhcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCC
Confidence            7777777642        6777777664 67999999999999999986   7789999999999999999987432211


Q ss_pred             ----C-C-----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChh-hHHHHHhc---CC-cH
Q 016612          186 ----P-L-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF-DCWICLRG---VK-TM  250 (386)
Q Consensus       186 ----~-~-----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~-~~  250 (386)
                          . .     .....+++.|+||.+ +.+|+|+|+++++++.+.+.+.............. ...+....   .. ..
T Consensus       214 ~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  292 (394)
T d1c7na_         214 YEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWL  292 (394)
T ss_dssp             CCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHH
T ss_pred             ccccchhhhhcccccceeecccccccc-cccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhh
Confidence                1 1     114568999999999 55689999999988878776665554443332222 22222111   11 12


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhc-CcceeccCC
Q 016612          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSF  328 (386)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l-~~~gi~~~~  328 (386)
                      ........++.+.+.+.++...       .++...        .+. .+.++++.++. ......+.+.+ +..|+.+.+
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~--------~p~-g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p  356 (394)
T d1c7na_         293 DGCIKVIDKNQRIVKDFFEVNH-------PEIKAP--------LIE-GTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDE  356 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-------TTSBCC--------CCS-BSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEE
T ss_pred             cccccccchhhhhhhhhhhccc-------cceeec--------CCC-ceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEc
Confidence            2222333344444444444321       112111        111 24455666532 11233344333 334677777


Q ss_pred             CCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          329 GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       329 G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      |..+.   .+                  .++++|||++.  +++++.+++|+++|+++
T Consensus       357 G~~Fg---~~------------------~~~~iRis~~~~~e~i~eal~rl~~~l~~L  393 (394)
T d1c7na_         357 GYIFG---DG------------------GIGFERINLAAPSSVIQESLERLNKALKDL  393 (394)
T ss_dssp             GGGGC---GG------------------GTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhC---CC------------------CCCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            66532   01                  36789999974  56678888999988763

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.96  E-value=3.8e-28  Score=227.37  Aligned_cols=331  Identities=18%  Similarity=0.163  Sum_probs=206.0

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcH-HHHH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAAL   83 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-t~al   83 (386)
                      ...+||+.++..+.. ++.+.++......+ .....++|.+. |.+ +|+++.+++++.+|.+    +.|++++| ++++
T Consensus        26 ~~~I~L~~G~Pd~~~-p~~i~eal~~a~~~-~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al  103 (418)
T d2r5ea1          26 YKPLNLGQGFPDYHA-PKYALNALAAAANS-PDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL  103 (418)
T ss_dssp             HCCEECSSSCCSSCC-CHHHHHHHHHHHTC-SCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CCCEEccCCCCCCCC-CHHHHHHHHHHHhC-CCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhh
Confidence            356888877655432 22222211111111 11234579888 886 8999999999887643    34555555 5899


Q ss_pred             H-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC---------------CCHHHHHhhhCCCceEEEEeC
Q 016612           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIGPWTKLVWVES  147 (386)
Q Consensus        84 ~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------------~d~~~l~~~~~~~~~~v~~~~  147 (386)
                      . ++..+++|||.|++++|.|+.+.    ..+...|.+++.++.               .+.+++......+++++++++
T Consensus       104 ~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  179 (418)
T d2r5ea1         104 YATIQGHVDEGDEVIIIEPFFDCYE----PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINT  179 (418)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEES
T ss_pred             hhhhhhccccccceeccccccchhh----HHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCC
Confidence            7 45668999999999999999996    445567777777664               157788888888999999999


Q ss_pred             CCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccC---------CCCCCccEEEeccccccccCCCceEEEEEE
Q 016612          148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (386)
Q Consensus       148 ~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~---------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~  215 (386)
                      ||||||.+.+   +++|+++|+++|++||+||+|....+..         +...+..+++.|+||.+ +.+|+|+||+++
T Consensus       180 p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~  258 (418)
T d2r5ea1         180 PHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWAYG  258 (418)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCGGGCCEEEES
T ss_pred             cCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccc-cCCCcccccccc
Confidence            9999999986   7789999999999999999986433211         11224579999999999 446899999998


Q ss_pred             cChhHHHHHHHhhhhcCCCCChhhHHHHHhc----------CC-cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCC
Q 016612          216 KGERLAKELYFLQNAEGSGLAPFDCWICLRG----------VK-TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  284 (386)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  284 (386)
                      ++ .+.+.+...........+...+.++...          .+ .+......+..+.+.+.+.|++..         +  
T Consensus       259 ~~-~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g---------~--  326 (418)
T d2r5ea1         259 PE-ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG---------M--  326 (418)
T ss_dssp             CH-HHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTT---------C--
T ss_pred             cc-hhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcC---------C--
Confidence            74 4555555444443444444433322211          11 223334445556666666666542         1  


Q ss_pred             CCchhhhhhccCCCCceEEEEeCC------------HHhHHHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHH
Q 016612          285 HPGHELHYSQAKGAGSVLSFLTGS------------LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVR  351 (386)
Q Consensus       285 ~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~  351 (386)
                          .+  ..|. .|.++++.+..            .....++.+.+ +..|+.+.+|..+..-  + .        .  
T Consensus       327 ----~~--~~P~-gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~--~-~--------~--  386 (418)
T d2r5ea1         327 ----NP--TVPQ-GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE--P-N--------K--  386 (418)
T ss_dssp             ----EE--EECS-BSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCG--G-G--------H--
T ss_pred             ----cc--cCCC-ceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCC--C-C--------c--
Confidence                11  0111 24444544421            11223333333 3447777777653210  0 0        0  


Q ss_pred             HhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 016612          352 QARGLTEDLVRISVGI--EDVNDLISDLDKALRT  383 (386)
Q Consensus       352 ~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  383 (386)
                         ..++++||||++.  +++++.+++|++.+.+
T Consensus       387 ---~~g~~~iRis~~~~~e~l~~a~~rl~~~lg~  417 (418)
T d2r5ea1         387 ---HLGEDFVRYCFFKKDENLQKAAEILRKWKGS  417 (418)
T ss_dssp             ---HHHTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred             ---cCCCCEEEEEecCCHHHHHHHHHHHHHHHcc
Confidence               0125789999964  5667778888877653

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=5.2e-29  Score=233.57  Aligned_cols=299  Identities=14%  Similarity=0.150  Sum_probs=193.7

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcH-HHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-t~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ...|++. |.+ +|+++.+++.+.+|.+    +.|++++| ++++.. +..+++|||.|++++|.|+.+.    ..++..
T Consensus        73 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~  148 (420)
T d1vp4a_          73 TLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI----NAFRQY  148 (420)
T ss_dssp             HTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTT
T ss_pred             ccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchh----HHHHHH
Confidence            3579888 887 8999999999887653    45555555 588874 5567999999999999999885    555678


Q ss_pred             CcEEEEeCCC----CHHHHHhhh---------CCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          118 GVVVKRVNTC----DLDEVASAI---------GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       118 g~~~~~v~~~----d~~~l~~~~---------~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      |.+++.++.+    +++.++..+         ++.+.++++++|+||||.+.+   +++|+++|+++++++|+||+|..-
T Consensus       149 g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l  228 (420)
T d1vp4a_         149 LANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGAL  228 (420)
T ss_dssp             TCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTC
T ss_pred             hhhcccccccccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhc
Confidence            8888888764    555544332         133446667899999999985   789999999999999999998743


Q ss_pred             CccCC--------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcC---C--
Q 016612          182 VLSRP--------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---K--  248 (386)
Q Consensus       182 ~~~~~--------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--  248 (386)
                      .+...        ...+..++++|++|++ + +|+|+||++++ +.+.+.+...........+...+..+...+   .  
T Consensus       229 ~~~~~~~~~~~~~~~~~~~i~~~s~sk~~-~-~G~RiG~~~~~-~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~  305 (420)
T d1vp4a_         229 RYEGETVDPIFKIGGPERVVLLNTFSKVL-A-PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLL  305 (420)
T ss_dssp             BCSSCCCCCHHHHHCTTTEEEEEESTTTT-C-GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHH
T ss_pred             cccCcccccccccccccceeEEecccccc-c-ccccccccccc-chhhhhhhhhhhhccccCchhhhhhhhhhccccccc
Confidence            32211        1235668888899987 4 58999999986 455555544444333344444443332211   1  


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccC
Q 016612          249 -TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  327 (386)
Q Consensus       249 -~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~  327 (386)
                       .+....+.+.++...+.+.+++.          +...++..+.  .+. .|.++++.+++......+.+.+...|+.+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~L~~~----------~~~~~g~~~~--~p~-gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~  372 (420)
T d1vp4a_         306 EQLKPTIELYRRKRTVMLNALEEY----------FSDIPGVKWV--KSE-GGLFIWLTLPEGFDTWEMFEYAKRKKVFYV  372 (420)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHH----------STTSTTCEEC--CCS-BSSEEEEECCTTCCTTTTHHHHHHHTEECE
T ss_pred             ccchhHHHHhhhhcccchhhhhhh----------hccCCCcEEe--cCC-ceEEEEEECCCCCCHHHHHHHHHHCCeEEE
Confidence             11222334444455555555542          2223333322  112 255677777544334456666677788888


Q ss_pred             CCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          328 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       328 ~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      +|..+..-                   +...++||||++.   +++++.+++|+++|++
T Consensus       373 PG~~F~~~-------------------~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~  412 (420)
T d1vp4a_         373 PGRVFKVY-------------------DEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE  412 (420)
T ss_dssp             EGGGGCTT-------------------CCCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             echhhCCC-------------------CCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence            87653211                   1236789999974   4566677888888865

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.96  E-value=8.1e-30  Score=237.91  Aligned_cols=297  Identities=14%  Similarity=0.106  Sum_probs=190.6

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCCC---c-eEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---R-ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~-~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g  118 (386)
                      ...|++. |.+ +|+++.+++.+.+|.+   + .++++++++++.. +.+++++||.|++++|+|+.+.    ..+...|
T Consensus        64 ~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~----~~~~~~g  139 (403)
T d1wsta1          64 ALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAI----QAFKYYD  139 (403)
T ss_dssp             HHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTC
T ss_pred             ccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhh----HHHhhcc
Confidence            4569988 887 8999999998877653   4 4444555588875 4568999999999999998886    5556788


Q ss_pred             cEEEEeCCC----CHHH-------HHhhhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc
Q 016612          119 VVVKRVNTC----DLDE-------VASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS  184 (386)
Q Consensus       119 ~~~~~v~~~----d~~~-------l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~  184 (386)
                      .+++.++.+    +...       .....+..+.++++++|+||||.+.+   +++|+++|++||++||+||+|..-.+.
T Consensus       140 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~  219 (403)
T d1wsta1         140 PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYS  219 (403)
T ss_dssp             CEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS
T ss_pred             ccceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecC
Confidence            888888754    2221       22223355667888899999999986   678999999999999999998632211


Q ss_pred             --------CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH--hcCCcH----
Q 016612          185 --------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL--RGVKTM----  250 (386)
Q Consensus       185 --------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----  250 (386)
                              .....+..++++|+||++ + +|+|+||++++++ +.+.+...........+...+.+..  ......    
T Consensus       220 ~~~~~~~~~~~~~~~~i~~~S~SK~~-~-~G~RiG~~i~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (403)
T d1wsta1         220 GEPTPPIKHFDDYGRVIYLGTFSKIL-A-PGFRIGWVAAHPH-LIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHI  296 (403)
T ss_dssp             SCCCCCGGGGCSSSCEEEEEESTTTT-C-GGGCCEEEEECHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCCCCcccccCCCCcEEEEcccccee-c-CcccccccccchH-HHHHHHHHHhhhccccccchhhhHHhhhhccccchhH
Confidence                    122346789999999998 5 5899999999754 4444443333322333333332221  112211    


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCC
Q 016612          251 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  330 (386)
Q Consensus       251 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~  330 (386)
                      ....+.+..+.+.+.+.+.+..      ..++.        +..+ ..|.++++.+++....+.+.+.+...|+.+.+|.
T Consensus       297 ~~~~~~~~~~~~~~~~~L~~~~------~~~~~--------~~~p-~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~  361 (403)
T d1wsta1         297 PKIIEFYKPRRDAMLEALEEYM------PEGVE--------WTKP-EGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGE  361 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC------CTTCE--------ECCC-SBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc------cCCeE--------EeCC-CceeEEEEECCCCCCHHHHHHHHHHCCEEEEech
Confidence            2223333344444555555431      01111        1111 2356777777655455667777777788887776


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      .+..-                   +-.++++||+++.   +++++.+++|+++|++
T Consensus       362 ~f~~~-------------------~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~  398 (403)
T d1wsta1         362 AFFVH-------------------RDKKNTMRLNFTYVPEETIREGVRRLAETIKE  398 (403)
T ss_dssp             GGSTT-------------------CCCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhcCC-------------------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            53210                   1136889999974   4567777777777764

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=3.2e-27  Score=219.14  Aligned_cols=325  Identities=17%  Similarity=0.201  Sum_probs=211.2

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcH-HHHHH-
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-   84 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-t~al~-   84 (386)
                      .+++++.++..++. ++.+.+  +...   ...+.++|.+. |.+ +|+++.+++.+.+|.+   +.|++++| ++++. 
T Consensus        29 ~vi~l~~G~p~~~~-p~~~~~--al~~---~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~  102 (389)
T d2gb3a1          29 RIHHLNIGQPDLKT-PEVFFE--RIYE---NKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILF  102 (389)
T ss_dssp             EEEECSSCCCCSCC-CTHHHH--HHHH---TCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHH
T ss_pred             CEEECCCCCCCCCC-CHHHHH--HHHh---cCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccc
Confidence            45777766555442 221122  1111   12356779887 887 8999999999887754   44555555 58887 


Q ss_pred             HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc-
Q 016612           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD-  157 (386)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~-  157 (386)
                      ++..++++||.|+++.|.|+.+.    ..++..|..++.++..      +.+.+.....++++++++++|+||||.+++ 
T Consensus       103 ~~~~l~~~gd~V~i~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~  178 (389)
T d2gb3a1         103 SFAVIANPGDEILVLEPFYANYN----AFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGK  178 (389)
T ss_dssp             HHHHHCCTTCEEEEEESCCTHHH----HHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             cccccccCCCeEEEeCCCCcccc----ccccccCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchH
Confidence            45668999999999999999886    4455677777777653      345566667789999999999999999985 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCCCCCCCccC------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh
Q 016612          158 --IRKIAEMAHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (386)
Q Consensus       158 --l~~i~~la~~~~~~li~D~a~~~~~~~~------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~  229 (386)
                        +++|.++|++++++||+||+|..-.+..      ....+..+++.|+||.++ .+|+|+||++++++.+.+.......
T Consensus       179 ~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~-~~GlRiG~~~~~~~~i~~~~~~~~~  257 (389)
T d2gb3a1         179 DEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFS-ACGARVGCLITRNEELISHAMKLAQ  257 (389)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTT-CGGGCCEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCEEEEEecccccccccccccccccccccccccccccccccc-CcccceeeeeccchhHHHHHhhhhh
Confidence              7899999999999999999986433221      112356788899999995 4689999999987777665544444


Q ss_pred             hcCCCCChhhHHHHHhcCC----cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEE
Q 016612          230 AEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  305 (386)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~  305 (386)
                      ... ..+..++.+....+.    .+....+.+.++.+.+.+.|++.+..        ..        .. +..+.++++.
T Consensus       258 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~--------~~--------~~-p~~g~~~~~~  319 (389)
T d2gb3a1         258 GRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLK--------RF--------TK-PSGAFYITAE  319 (389)
T ss_dssp             HSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------CB--------CC-CSBSSEEEEE
T ss_pred             ccc-cccccccccccccccccchhcccccccccccchhhhhhhhhhccc--------cc--------cC-CCceEEEEEe
Confidence            333 333333333322222    12333445566666777777765410        00        01 2235677777


Q ss_pred             eCC---HHhHHHHHhhc--CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHH
Q 016612          306 TGS---LALSKHVVETT--KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLD  378 (386)
Q Consensus       306 ~~~---~~~~~~l~~~l--~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~  378 (386)
                      ++.   .+++++++++.  ...++.+.+|..+..-  |                +.+++++|||++.  +++++.+++|.
T Consensus       320 lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~--~----------------~~~~~~iRis~~~~~~~l~~a~~~L~  381 (389)
T d2gb3a1         320 LPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLT--P----------------GLGKKEIRIACVLEKDLLSRAIDVLM  381 (389)
T ss_dssp             CSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS--T----------------TTTSSEEEEECCSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccC--C----------------CCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence            743   33455555543  2346666665542110  1                2246899999964  55567788888


Q ss_pred             HHHhc
Q 016612          379 KALRT  383 (386)
Q Consensus       379 ~~l~~  383 (386)
                      ++|++
T Consensus       382 ~~lk~  386 (389)
T d2gb3a1         382 EGLKM  386 (389)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.96  E-value=8.8e-27  Score=218.59  Aligned_cols=292  Identities=14%  Similarity=0.156  Sum_probs=187.9

Q ss_pred             ccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           47 YDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      ..|++. |.+ +|+++.+++.+.+|.    + +.|++++| ++++. ++.++++|||.|++++|.|+.+..   .+....
T Consensus        77 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~---~~~~~~  153 (428)
T d1iaya_          77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRT  153 (428)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTT
T ss_pred             ccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHH---HHHHhc
Confidence            468887 887 899999999988763    2 34555555 58887 566789999999999999998863   233356


Q ss_pred             CcEEEEeCCC-------CHHHHHhh------hCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          118 GVVVKRVNTC-------DLDEVASA------IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       118 g~~~~~v~~~-------d~~~l~~~------~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      |++++.++.+       |+++++..      ..++++++++++|+||||.+.+   +++|.++|++||++||+||+|+..
T Consensus       154 g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~  233 (428)
T d1iaya_         154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT  233 (428)
T ss_dssp             CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred             CCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEeccccccc
Confidence            8899888753       56665543      3468899999999999999986   788999999999999999998743


Q ss_pred             CccC----------------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          182 VLSR----------------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       182 ~~~~----------------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      .+..                ....+..+++.|+||.+ +.+|+|+||+++.++.+.+.........  ..+...+..+..
T Consensus       234 ~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~GlRiG~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~a  310 (428)
T d1iaya_         234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFNDDVVNCARKMSSFG--LVSTQTQYFLAA  310 (428)
T ss_dssp             CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEESCHHHHHHHHHHHTTS--CCCHHHHHHHHH
T ss_pred             ccCcccccccccccchhhccccccceEEEEecCCCcc-cCCCcccccccccccchhhhhhhhhccc--ccccccccchhh
Confidence            2211                01124568999999998 5568999999998777776655544332  223333322222


Q ss_pred             cCCc-------HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC------HHhH
Q 016612          246 GVKT-------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS------LALS  312 (386)
Q Consensus       246 ~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~  312 (386)
                      .+..       +....+.+.++.+.+.+.++..         +++      +.  .+. .|.++|+.+..      .+..
T Consensus       311 ~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~---------gi~------~~--~p~-gg~f~w~~l~~~~~~~~~~~~  372 (428)
T d1iaya_         311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV---------GIK------CL--KNN-AGLFCWMDLRPLLRESTFDSE  372 (428)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------TCC------BC--CCS-SSSEEEEECGGGCSSSSHHHH
T ss_pred             hhhhhccccccccccccccchhHHHHHHHHHhC---------CCE------Ee--cCC-cceEEEEECccccccCCCCCH
Confidence            2221       1112222333334444444432         221      11  112 25566666532      2223


Q ss_pred             HHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          313 KHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       313 ~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      .++.+.+ +..|+.+.+|..+.                     ..++++||||++.   +.+++.+++|+++|..
T Consensus       373 ~~l~~~Ll~~~gV~v~PG~~F~---------------------~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         373 MSLWRVIINDVKLNVSPGSSFE---------------------CQEPGWFRVCFANMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             HHHHHHHHHTSCEECEEGGGGT---------------------CSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCEEEEcchhcC---------------------CCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence            3344333 34577777776532                     1147899999974   2466788888888854

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.7e-27  Score=218.78  Aligned_cols=299  Identities=14%  Similarity=0.171  Sum_probs=191.8

Q ss_pred             CCCccccCC-CCchHHHHHHHHHhhcCCC----ceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           44 NGPYDYTRS-GNPTRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        44 ~~~~~y~~~-g~~~~~~l~~~l~~~~g~~----~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      .+.++|.+. |.++++++.+++++.+|.+    ++++++++++++. ++.++++|||+|++++|.|+.+.    .+++..
T Consensus        27 ~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~  102 (361)
T d1d2fa_          27 HGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFY----KAIEGN  102 (361)
T ss_dssp             TCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHH----HHHHHT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchh----HHHHhh
Confidence            445678887 6458999999999887754    4555555569987 55668899999999999998885    444566


Q ss_pred             CcEEEEeCC--------CCHHHHHhhhC-CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-
Q 016612          118 GVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-  184 (386)
Q Consensus       118 g~~~~~v~~--------~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-  184 (386)
                      |.+++.++.        .|++++++.+. ++++++++++|+||||.+.+   +++|+++|+++|++||+|++|....+. 
T Consensus       103 g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~  182 (361)
T d1d2fa_         103 QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGE  182 (361)
T ss_dssp             TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSS
T ss_pred             cceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccc
Confidence            777766653        28889998875 68999999999999999985   889999999999999999998743322 


Q ss_pred             ------CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHH-HHhhhhcCC-CCChhhHHHHHhcCC----cHHH
Q 016612          185 ------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-YFLQNAEGS-GLAPFDCWICLRGVK----TMAL  252 (386)
Q Consensus       185 ------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~  252 (386)
                            .....+..+++.|+||.+ +.+|+|+||+++..+...+.. .......+. ..+.....+......    ....
T Consensus       183 ~~~~~~~~~~~~~~v~~~s~SK~~-~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  261 (361)
T d1d2fa_         183 QPHIPWSNVARGDWALLTSGSKSF-NIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDA  261 (361)
T ss_dssp             SCCCCGGGTCCSSEEEEECSHHHH-TCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccccccccccccccccccccccc-ccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhc
Confidence                  112234568999999998 556899999988765543332 333322222 222222222221111    1122


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhc-CcceeccCCCC
Q 016612          253 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGS  330 (386)
Q Consensus       253 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l-~~~gi~~~~G~  330 (386)
                      ......++.+.+.+.+.+..       .++...        .+. .+.++++.+.. ......+.+++ +..|+.+.+|.
T Consensus       262 ~~~~~~~r~~~~~~~~~~~~-------~~~~~~--------~p~-gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~  325 (361)
T d1d2fa_         262 LRIYLKDNLTYIADKMNAAF-------PELNWQ--------IPQ-STYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGY  325 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-------SSCCCC--------CCS-BCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGG
T ss_pred             ccccchhhHHHHHHHhhhhc-------cccccc--------ccC-ceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEecc
Confidence            22333334444444433321       122211        111 24455666631 12344455544 45578777776


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhcC
Q 016612          331 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  384 (386)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~~  384 (386)
                      .+.   .+                  .+++||||++.  +++++.+++|.++++++
T Consensus       326 ~F~---~~------------------~~~~vRis~~~~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         326 TYG---EE------------------GRGFVRLNAGCPRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             GGC---GG------------------GTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccC---CC------------------CCCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            532   01                  35789999964  67788899999998863

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.95  E-value=4.8e-28  Score=224.09  Aligned_cols=323  Identities=19%  Similarity=0.149  Sum_probs=216.8

Q ss_pred             CCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-C-CchHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHH-HHh-cC
Q 016612           18 NEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDKAD--RALCFTSGMAALAAV-THL-LG   91 (386)
Q Consensus        18 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~-~~~-~~   91 (386)
                      +++..+|..|.++.++..........++...+... . ....+++++.+++++|++  +.++++++|++++.+ .++ ++
T Consensus        11 ld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~   90 (381)
T d1elua_          11 FNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWH   90 (381)
T ss_dssp             CCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCC
T ss_pred             eeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhc
Confidence            34455777777666532111111111222222222 1 135778999999999986  466666778998754 454 68


Q ss_pred             CCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHH
Q 016612           92 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (386)
Q Consensus        92 ~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l  164 (386)
                      +||+|+++++.|++....+..+.+..|++++.++..       +.+.+++.++++|+++++++++|+||.+.|+++|.++
T Consensus        91 ~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l  170 (381)
T d1elua_          91 QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAV  170 (381)
T ss_dssp             TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHH
T ss_pred             CCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccchhhHHHHH
Confidence            999999999999998888888888899999999863       2566778888999999999999999999999999999


Q ss_pred             HHHc----CCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh---------
Q 016612          165 AHAH----GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------  230 (386)
Q Consensus       165 a~~~----~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~---------  230 (386)
                      |+++    ++++++|++++.+..+ +....++|++++|++||+++|.|  +|+++.+++...+ +......         
T Consensus       171 ~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G--~g~l~~~~~~~~~-~~p~~~~~~~~~~~~~  247 (381)
T d1elua_         171 CRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAG--VGGLYIHGDCLGE-INPTYVGWRSITYGAK  247 (381)
T ss_dssp             HHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTT--CEEEEECTTTGGG-CCCCSCCTTTEEECTT
T ss_pred             Hhhcccccccccccccccccccccccccccccccccccccccccccch--hhHHHhhHHHHHh-cCcccccccccccccc
Confidence            9985    6999999999988754 34456899999999999999888  6888887553322 2110000         


Q ss_pred             -------------cCCCCChhhHHHHHhcCC------cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhh
Q 016612          231 -------------EGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  291 (386)
Q Consensus       231 -------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~  291 (386)
                                   .....+....+.+..+++      ....+.++..+..+.+.+.|++.+.              ..++
T Consensus       248 ~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~--------------~~~~  313 (381)
T d1elua_         248 GEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPH--------------VHCL  313 (381)
T ss_dssp             SCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTT--------------EEES
T ss_pred             cccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCC--------------eEec
Confidence                         001122222222222221      2233345555566666666666542              2222


Q ss_pred             hhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChH
Q 016612          292 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN  371 (386)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~  371 (386)
                      .. ...++++++|.+++....+.+.+.|+..|+.++...                          .++++|+|++..++.
T Consensus       314 ~~-~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~--------------------------~~~~lRis~~~~nt~  366 (381)
T d1elua_         314 AT-SAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA--------------------------DPDCIRACCHYITDE  366 (381)
T ss_dssp             CS-SCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET--------------------------TTTEEEEECCTTCCH
T ss_pred             CC-CCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecC--------------------------CCCEEEEecCCCCCH
Confidence            11 123578999998665556667777777777653211                          256799999987778


Q ss_pred             HHHHHHHHHHhcC
Q 016612          372 DLISDLDKALRTG  384 (386)
Q Consensus       372 ~~i~~l~~~l~~~  384 (386)
                      +.++.+-++|++.
T Consensus       367 edid~ll~~l~e~  379 (381)
T d1elua_         367 EEINHLLARLADF  379 (381)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhh
Confidence            8888888888765

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.95  E-value=1.6e-26  Score=216.94  Aligned_cols=293  Identities=16%  Similarity=0.157  Sum_probs=186.7

Q ss_pred             CccccCC-CCc-hHHHHHHHHHhhcCC----C-ceEEeCcH-HHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           46 PYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g-t~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ...|.+. |.+ +|+++.+++.+.+|.    + +.|++++| ++++. ++.++++|||.|++++|.|+.+...   +...
T Consensus        77 ~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~---~~~~  153 (431)
T d1m7ya_          77 LALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRD---LKWR  153 (431)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH---TTTT
T ss_pred             hcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH---HHHh
Confidence            3468888 887 899999999988763    2 35555555 58887 5566889999999999999888632   2334


Q ss_pred             CCcEEEEeCCC-------CHHHHHhhhC------CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          117 TGVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       117 ~g~~~~~v~~~-------d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      .|++++.++.+       |++++++.+.      .+++++++++|+||||.+.+   +++|.++|+++|++||+||+|+.
T Consensus       154 ~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~  233 (431)
T d1m7ya_         154 TGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSG  233 (431)
T ss_dssp             TCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred             cCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccc
Confidence            67888888753       6677766553      47889999999999999986   78899999999999999999863


Q ss_pred             CCccC------------------CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHH
Q 016612          181 PVLSR------------------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (386)
Q Consensus       181 ~~~~~------------------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
                      ..+..                  ....+..+++.|+||.+ +.+|+|+||++++++.+...........  ..+...+.+
T Consensus       234 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~RiG~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~  310 (431)
T d1m7ya_         234 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQHL  310 (431)
T ss_dssp             GCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS-CCGGGCEEEEEESCHHHHHHHHHHGGGS--CCCHHHHHH
T ss_pred             cccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccc-cCCCCccceeccchhhhHHHHHHHhccc--cccccccch
Confidence            22210                  00113569999999999 5568999999998766655444333332  222222222


Q ss_pred             HHhcCC-------cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC------H
Q 016612          243 CLRGVK-------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS------L  309 (386)
Q Consensus       243 ~~~~~~-------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~------~  309 (386)
                      +...+.       .+......+.++.+.+.+.+++.         ++      .+.  .+. .|.++|+.++.      .
T Consensus       311 ~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------gi------~~~--~p~-gg~f~w~~l~~~~~~~~~  372 (431)
T d1m7ya_         311 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS---------GI------SCL--NGN-AGLFCWVDMRHLLRSNTF  372 (431)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------TC------EEC--CCC-SSSEEEEECGGGSSSSSH
T ss_pred             hhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC---------Cc------EEe--cCC-ceeEEEEECccccccCcc
Confidence            211111       11222222333444444444432         11      111  111 24556666532      2


Q ss_pred             HhHHHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 016612          310 ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  383 (386)
Q Consensus       310 ~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  383 (386)
                      ....++.+.+ ...|+.+.+|..+.                     ...++++|||++.   +++++.+++|+++|++
T Consensus       373 ~~~~~l~~~ll~~~gV~v~PG~~F~---------------------~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         373 EAEMELWKKIVYEVHLNISPGSSCH---------------------CTEPGWFRVCFANLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             HHHHHHHHHHHHTSCEECEEGGGGT---------------------CSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHCCEEEEeccccC---------------------CCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence            2233344333 34577777776521                     1146899999974   3467788889888875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=2e-26  Score=212.12  Aligned_cols=314  Identities=17%  Similarity=0.148  Sum_probs=200.8

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~   87 (386)
                      ..+|++.++..++ .++.+.++  ... .+  ....+|.+. |.+   ++++.++++++.+  ++++++++++++. ++.
T Consensus        26 ~~I~ls~g~p~~~-~p~~i~~a--l~~-~l--~~~~~Y~~~~G~~---elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~   96 (368)
T d1v2da_          26 GAVNLGQGFPSNP-PPPFLLEA--VRR-AL--GRQDQYAPPAGLP---ALREALAEEFAVEPESVVVTSGATEALYVLLQ   96 (368)
T ss_dssp             TCEECCCCSCSSC-CCHHHHHH--HHH-HT--TTSCSCCCTTCCH---HHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred             CCEEecCCCCCCC-CCHHHHHH--HHH-Hh--hcccCCCCCcCCH---HHHHHHHhhcccCCcceeeccchHHHHHHHhh
Confidence            4688886655444 12222221  111 11  123568776 765   4555566667766  5666666779997 556


Q ss_pred             HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC--------CCHHHHHhhhCCCceEEEEeCCCCCCccccc--
Q 016612           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD--  157 (386)
Q Consensus        88 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~--  157 (386)
                      .++++||.|++++|+|+.+..    ..+..|..++.++.        .|++++++.++++++++++++|+||||.+.+  
T Consensus        97 ~l~~~~d~v~~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~  172 (368)
T d1v2da_          97 SLVGPGDEVVVLEPFFDVYLP----DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGER  172 (368)
T ss_dssp             HHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             ccccccccccccCCcchhhhh----HHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHH
Confidence            789999999999999998864    44456666665553        2899999999999999999999999999986  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCCCCCCCccCCC------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhh
Q 016612          158 -IRKIAEMAHAHGALLLVDNSIMSPVLSRPL------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (386)
Q Consensus       158 -l~~i~~la~~~~~~li~D~a~~~~~~~~~~------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~  230 (386)
                       +++|+++|++||+++|+|+++.........      ..+..+++.|+||.+ +.+|+|+||++++++ +.+.+......
T Consensus       173 ~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~-~~~G~R~g~~~~~~~-~~~~~~~~~~~  250 (368)
T d1v2da_         173 ELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRL-EATGYRVGWIVGPKE-FMPRLAGMRQW  250 (368)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHT-TCGGGCCEEEECCTT-THHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccc-ccccccccccccccc-ccchhhhhhhc
Confidence             788999999999999999998754332111      224568888999988 456899999998754 44444444444


Q ss_pred             cCCCCChhhHHHHHhc------CCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE
Q 016612          231 EGSGLAPFDCWICLRG------VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  304 (386)
Q Consensus       231 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~  304 (386)
                      .....+...+......      .+.+....+.+.++.+.+.+.+++..         +.      +.  . +..+.++++
T Consensus       251 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---------~~------~~--~-p~g~~~~~~  312 (368)
T d1v2da_         251 TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG---------LR------VY--V-PEGTYFLMA  312 (368)
T ss_dssp             HTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT---------CC------EE--C-CSBSSEEEE
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcC---------cE------Ee--c-CCceeEEEE
Confidence            4444444433322221      12233333445556666666666542         11      11  1 112567777


Q ss_pred             EeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHH
Q 016612          305 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKAL  381 (386)
Q Consensus       305 ~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l  381 (386)
                      .+++.+ ..+++++   .|+.+.+|..+..-                   +..+++||||++.  +++++.+++|+++|
T Consensus       313 ~l~~~~-~~~ll~~---~gI~v~pg~~F~~~-------------------~~~~~~iRis~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         313 ELPGWD-AFRLVEE---ARVALIPASAFYLE-------------------DPPKDLFRFAFCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             ECTTCC-HHHHHHH---TCEECEEGGGGCSS-------------------SCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             eCCccH-HHHHHHh---CCEEEEechhhCCC-------------------CCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence            887654 4455544   57777776543210                   1136889999963  55566666666653

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.95  E-value=4e-27  Score=215.72  Aligned_cols=312  Identities=14%  Similarity=0.156  Sum_probs=198.7

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEeCcHH-HHHHHHHHh
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHL   89 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~gt-~al~~~~~~   89 (386)
                      .+++|+.+.+.+|. ++++.++.  .. ..  .....|...+.   .++++.+++++|.+ +.|++++|+ +++.++...
T Consensus        23 ~~idls~~~np~~~-p~~~~~a~--~~-~~--~~~~~Yp~~~~---~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~   93 (355)
T d1lc5a_          23 QLLDFSANINPLGM-PVSVKRAL--ID-NL--DCIERYPDADY---FHLHQALARHHQVPASWILAGNGETESIFTVASG   93 (355)
T ss_dssp             GSEECSSCCCTTCC-CHHHHHHH--HH-TG--GGGGSCCCTTC---HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             heEEccCCCCCCCC-CHHHHHHH--HH-HH--HHhccCCCCCh---HHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhh
Confidence            47788855455663 33333321  11 11  12344643333   46788888888887 556666676 666666655


Q ss_pred             cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc---HHH
Q 016612           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRK  160 (386)
Q Consensus        90 ~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~  160 (386)
                      +.+ +.+++..|.|+.+..    .....+..++.++..      ..+++.+.+.++++++++++|+||||.+++   +++
T Consensus        94 ~~~-~~~~v~~p~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~  168 (355)
T d1lc5a_          94 LKP-RRAMIVTPGFAEYGR----ALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA  168 (355)
T ss_dssp             HCC-SEEEEEESCCTHHHH----HHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred             hcc-ccccccCCccceecc----ccccccccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccchhhhhhh
Confidence            544 455666788877653    333445666666643      235577778889999999999999999986   778


Q ss_pred             HHHHHHHcCCEEEEeCCCCCCCcc------CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCC
Q 016612          161 IAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (386)
Q Consensus       161 i~~la~~~~~~li~D~a~~~~~~~------~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~  234 (386)
                      |.++|+++++++|+||+|......      .....+..+++.|+||++ |.+|+|+||++++++.+.+.+....  ....
T Consensus       169 i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlR~G~~i~~~~~~~~~~~~~~--~~~~  245 (355)
T d1lc5a_         169 IADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDAAMARMRRQQ--MPWS  245 (355)
T ss_dssp             HHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHHHHHHHHHHS--CTTC
T ss_pred             hhhhccccccccccccceeeeeeecccccccccccccceeeccccccc-ccccccccceeccchhhhHHHHhhc--CCcc
Confidence            889999999999999998632211      122335679999999999 5568999999998776666554433  2245


Q ss_pred             CChhhHHHHHhcCCcH---HHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHh
Q 016612          235 LAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL  311 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  311 (386)
                      .+...+.++...+...   ....+.+.++.+.+.+.+.+..              +..+.    ++.++++++.++..  
T Consensus       246 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~----p~~~~f~~~~~~~~--  305 (355)
T d1lc5a_         246 VNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLP--------------LLTVY----PGRANYLLLRCERE--  305 (355)
T ss_dssp             SCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTST--------------TEEEC----CCSSSEEEEEESCT--
T ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcC--------------CcEEC----CCCCEEEEEECCCC--
Confidence            5566666666655542   2333344445555555555432              22111    23467788887542  


Q ss_pred             HHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-cCChHHHHHHHHHHH
Q 016612          312 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-IEDVNDLISDLDKAL  381 (386)
Q Consensus       312 ~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~~~~~i~~l~~~l  381 (386)
                      ..++.+.+...|+.+++|..+.                     +.++++||||++ .+++++++++|++.|
T Consensus       306 ~~~~~~~L~~~gv~vr~~~~f~---------------------~~~~~~iRis~~~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         306 DIDLQRRLLTQRILIRSCANYP---------------------GLDSRYYRVAIRSAAQNERLLAALRNVL  355 (355)
T ss_dssp             TCCHHHHHHTTTEECEECTTST---------------------TCCTTEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCcEEEeCccCC---------------------CCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            3345666667788877765421                     224688999996 477777788777754

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.5e-26  Score=213.79  Aligned_cols=223  Identities=19%  Similarity=0.238  Sum_probs=158.9

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcH-HHHHH
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAALA   84 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-t~al~   84 (386)
                      ..+||+.++..++. ++.+.++.  ..  ....+.++|++. |.+ +|+++.+++.+.+|.+    +.|++++| ++++.
T Consensus        27 ~~i~l~~G~Pd~~~-p~~i~~a~--~~--~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~  101 (382)
T d1u08a_          27 QAINLSQGFPDFDG-PRYLQERL--AH--HVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY  101 (382)
T ss_dssp             TCEECCCSSCSSCC-CHHHHHHH--HH--HHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred             CCEEccCCCCCCCC-CHHHHHHH--HH--HHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHH
Confidence            45899988776652 22222221  11  112456789888 887 8999999999887653    33555555 58987


Q ss_pred             -HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCccccc
Q 016612           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        85 -~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~  157 (386)
                       ++.+++++||.|++++|.|+.+.    ..+...|..+..++..      |.+++++.++++++++++++||||||.+.+
T Consensus       102 ~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~  177 (382)
T d1u08a_         102 AAITALVRNGDEVICFDPSYDSYA----PAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQ  177 (382)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHhhcccccceEEEecccccchh----hhhhhccccceecccccccccCCHHHHhhhhccCccEEEECCCCcccccccc
Confidence             56778999999999999999886    4445666666655543      789999999999999999999999999986


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCCCCCCccC-----CC----CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHH
Q 016612          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (386)
Q Consensus       158 ---l~~i~~la~~~~~~li~D~a~~~~~~~~-----~~----~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~  225 (386)
                         +++|.++|++++++++.|+.+.......     ..    ..+..+++.|+||.+ +.+|+|+||+++++ .+.+.+.
T Consensus       178 ~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~pG~RiG~~v~~~-~~~~~~~  255 (382)
T d1u08a_         178 QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAPA-PISAEIR  255 (382)
T ss_dssp             HHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECCH-HHHHHHH
T ss_pred             cccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccc-cCCcccchhhhccc-hhHHHHH
Confidence               6778888899999999999986433221     11    124579999999999 45689999999864 4555554


Q ss_pred             HhhhhcCCCCChhhHHHHHh
Q 016612          226 FLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~  245 (386)
                      ..........+...+.++..
T Consensus       256 ~~~~~~~~~~~~~~q~a~~~  275 (382)
T d1u08a_         256 KVHQYLTFSVNTPAQLALAD  275 (382)
T ss_dssp             HHHHHHTSSCCHHHHHHHHH
T ss_pred             hhhccccccccccccccccc
Confidence            55544445555555555443

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.2e-26  Score=213.29  Aligned_cols=223  Identities=18%  Similarity=0.214  Sum_probs=156.3

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCC-CCCCccccCC-CCc-hHHHHHHHHHhhcCCC----ceEEeCcHH-HH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-ENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AA   82 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~gt-~a   82 (386)
                      ..+++++.++..++. ++.+.+  ++.+ .+. ....++|++. |.+ +|+++.+++.+.+|.+    +.|++++|+ ++
T Consensus        25 ~dvI~l~~G~p~~~~-p~~v~~--a~~~-al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a  100 (418)
T d1w7la_          25 HDVVNLGQGFPDFPP-PDFAVE--AFQH-AVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA  100 (418)
T ss_dssp             SCCEECCCCSCSSCC-CHHHHH--HHHH-HTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred             CCCEECCCCCCCCCC-CHHHHH--HHHH-HHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence            447888877655542 221222  1221 111 1234569887 887 8999999999887764    345566665 88


Q ss_pred             HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----------------CHHHHHhhhCCCceEEE
Q 016612           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----------------DLDEVASAIGPWTKLVW  144 (386)
Q Consensus        83 l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----------------d~~~l~~~~~~~~~~v~  144 (386)
                      +. ++.+++++||.|++++|.|+.+.    ..+...|.+.+.++..                 |.+++.....+++++++
T Consensus       101 l~~~~~~l~~~g~~vlv~~p~~~~y~----~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~  176 (418)
T d1w7la_         101 LFTAFQALVDEGDEVIIIEPFFDCYE----PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALV  176 (418)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEE
T ss_pred             HHHHHHhhccCCceeeccccccchhH----HHHHHcCCEeeccccccccccccccccccCcccchhhhhcccccccccee
Confidence            87 56668999999999999999996    4455677776655531                 56677777788999999


Q ss_pred             EeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCC----CCCccEEEeccccccccCCCceEEE
Q 016612          145 VESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGV  212 (386)
Q Consensus       145 ~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~----~~~~di~~~S~sK~~~g~~g~~~G~  212 (386)
                      +++||||||.+++   +++|.++|+++++++|+|++|..-.+.     ...    ..+..+++.|+||.++ .+|+|+||
T Consensus       177 ~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~pG~RvG~  255 (418)
T d1w7la_         177 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFS-ATGWKVGW  255 (418)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT-CGGGCCEE
T ss_pred             ccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCcccc-CCCCcccc
Confidence            9999999999985   788999999999999999998643221     111    1245799999999984 46899999


Q ss_pred             EEEcChhHHHHHHHhhhhcCCCCChhhHHHH
Q 016612          213 LAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (386)
Q Consensus       213 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (386)
                      +++++ .+.+.+.........+.+...+.++
T Consensus       256 ~v~~~-~~~~~l~~~~~~~~~~~~~~~q~~~  285 (418)
T d1w7la_         256 VLGPD-HIMKHLRTVHQNSVFHCPTQSQAAV  285 (418)
T ss_dssp             EECCH-HHHHHHHHHHHTTTSCCCHHHHHHH
T ss_pred             cccch-hhhhhhccccccccccccchhhHHH
Confidence            99874 5655565555544445555444433

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-26  Score=216.29  Aligned_cols=295  Identities=16%  Similarity=0.190  Sum_probs=196.3

Q ss_pred             hHHHHHHHHHhhcCCC--c-eEEeCcHHHHHHHH-HH----hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKAD--R-ALCFTSGMAALAAV-TH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~-~i~~~~gt~al~~~-~~----~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      ..++.++.+++++|..  + .+++.++|++++.+ .+    .+++||+|++.+.+|++....|+.+++..|++++.++.+
T Consensus        67 ~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~  146 (405)
T d1jf9a_          67 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN  146 (405)
T ss_dssp             HHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC
T ss_pred             HHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCC
Confidence            4677889999999853  3 44555567888643 22    368999999999999999989988889999999999854


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           |+++++.+++++|++|.+++.+|.+|.+.|+++|.++|+++|+++++|.+++.|..+ +....++|++++|+|||
T Consensus       147 ~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~  226 (405)
T d1jf9a_         147 PDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL  226 (405)
T ss_dssp             TTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGT
T ss_pred             CCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeecccccc
Confidence                 789999999999999999999999999999999999999999999999999999875 45567999999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhh---------------------hcCCCCChh-hHHHHHhcCCcHH-HHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQN---------------------AEGSGLAPF-DCWICLRGVKTMA-LRVEKQQ  258 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~---------------------~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~  258 (386)
                      + ||.|  .|+++++++ ..+.......                     ....+..+. ....+..+++.+. ...+...
T Consensus       227 ~-Gp~G--~g~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~  302 (405)
T d1jf9a_         227 Y-GPTG--IGILYVKEA-LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIA  302 (405)
T ss_dssp             T-SCSS--CEEEEECHH-HHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             c-cCCC--ceeeeechh-hhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHH
Confidence            7 7888  699998754 3222111100                     001122222 2222222222111 1123333


Q ss_pred             HHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCcccccccc
Q 016612          259 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP  338 (386)
Q Consensus       259 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p  338 (386)
                      ++.+.+.+++.+.          +...+...++  .+..++++++|.++... .+.+...+...||.++.|.+++.   +
T Consensus       303 ~~~~~L~~~~~~~----------l~~~~~~~~~--~~~~r~~ivsf~~~~~~-~~~~~~~L~~~gI~v~~G~~c~~---~  366 (405)
T d1jf9a_         303 EYEQNLMHYALSQ----------LESVPDLTLY--GPQNRLGVIAFNLGKHH-AYDVGSFLDNYGIAVRTGHHCAM---P  366 (405)
T ss_dssp             HHHHHHHHHHHHH----------HTTSTTEEEE--SCTTCCSEEEEEETTCC-HHHHHHHHHHTTEECEEECTTCH---H
T ss_pred             HHHHHHHHHHHhh----------hhcCCccccc--CCcCcCcEEEEEcCCCC-HHHHHHHHHHCCcEEEccchhhh---h
Confidence            3334443333321          1122222222  12345789999986543 44566666677888887765321   1


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          339 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                                 .....+ .++.||||++..++.+.|+.+.++|+
T Consensus       367 -----------~~~~~~-~~g~iRiS~~~ynt~eDid~l~~~l~  398 (405)
T d1jf9a_         367 -----------LMAYYN-VPAMCRASLAMYNTHEEVDRLVTGLQ  398 (405)
T ss_dssp             -----------HHHHTT-CSCEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             -----------HHHhcC-CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence                       111122 25789999997544444554444444

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.94  E-value=2e-25  Score=204.37  Aligned_cols=323  Identities=18%  Similarity=0.136  Sum_probs=225.4

Q ss_pred             cceeeccCCCCCCCCCcccceeeeeeeecCCCCCCC-CccccCC--CCc-hHHHHHHHHHhhcCCCceEEeCcHHHHHH-
Q 016612           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG-PYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAALA-   84 (386)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~al~-   84 (386)
                      ...++|++ +|||+|....|.+.......  +...+ ...-++.  |.. ..+++|+.+++++|.++++++++|..|.. 
T Consensus        44 ~~~~~~Fs-SndYLGL~~~p~v~~a~~~a--l~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~  120 (396)
T d2bwna1          44 KQDITVWC-GNDYLGMGQHPVVLAAMHEA--LEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDA  120 (396)
T ss_dssp             EEEEEECS-CSCTTSGGGCHHHHHHHHHH--HHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHH
T ss_pred             CeEEEEEE-cccccCcCCCHHHHHHHHHH--HHHhCCCccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHH
Confidence            57899999 99999999888665322111  11111 2223443  654 78999999999999999999999997754 


Q ss_pred             HHHHh--cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC----CCceEEEEeCCCCCCcccccH
Q 016612           85 AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        85 ~~~~~--~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l  158 (386)
                      ++.++  ..+||.|+.....|.+..    ..++..+.+++.++..|.+++++.+.    .+.++|+++...+++|.+.|+
T Consensus       121 ~i~~l~~~~~~d~i~~D~~~Hasi~----~g~~ls~a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl  196 (396)
T d2bwna1         121 TLSTLRVLFPGLIIYSDSLNHASMI----EGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPI  196 (396)
T ss_dssp             HHHHHHHHSTTCEEEEETTCCHHHH----HHHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCH
T ss_pred             HHHHHhcccCCCceeehhhhhhccc----hhhhccccCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCccccccc
Confidence            44444  578898888888887664    33446677888889899888877664    456788889999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCCCCCCccCCC---------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh-
Q 016612          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-  228 (386)
Q Consensus       159 ~~i~~la~~~~~~li~D~a~~~~~~~~~~---------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~-  228 (386)
                      ++|.++|++||+.+++||+|+.|.+....         ....|++++|++|.+++.    +|++.++ +.+.+.+.... 
T Consensus       197 ~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~----Gg~v~~~-~~~i~~l~~~~~  271 (396)
T d2bwna1         197 KEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF----GGYIAAS-ARMVDAVRSYAP  271 (396)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC----CEEEEEC-HHHHHHHHHHCH
T ss_pred             HhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccccc----ccccchh-HHHHHHHHhhcc
Confidence            99999999999999999999988765221         224699999999999543    5888876 55555554332 


Q ss_pred             -hhcCCCCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceE
Q 016612          229 -NAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  302 (386)
Q Consensus       229 -~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  302 (386)
                       ..+.+.+++....+...+++.     ...+...+..+.+.+...+.+..         ++..          ...++++
T Consensus       272 ~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g---------~~~~----------~~~spIv  332 (396)
T d2bwna1         272 GFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALG---------MPII----------DHGSHIV  332 (396)
T ss_dssp             HHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHT---------CCBC----------CCSSSCE
T ss_pred             hhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcC---------CCcC----------CCCCCEE
Confidence             234556666666555443321     12223445566666666665532         1111          2246889


Q ss_pred             EEEeCCHHhHHHHHhhc-CcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 016612          303 SFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  381 (386)
Q Consensus       303 ~~~~~~~~~~~~l~~~l-~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  381 (386)
                      .+.++++..+..+.+.+ +.+|+.+..      +.+|..              +.+...+||+++..++++.|+.+.++|
T Consensus       333 pv~ig~~~~~~~~a~~lL~e~Gi~v~~------i~~PtV--------------p~g~~rlRi~lsa~ht~edId~l~~~L  392 (396)
T d2bwna1         333 PVVIGDPVHTKAVSDMLLSDYGVYVQP------INFPTV--------------PRGTERLRFTPSPVHDLKQIDGLVHAM  392 (396)
T ss_dssp             EEECCCHHHHHHHHHHHHHHHCEECCE------ECTTTS--------------CTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHhCCEEEEE------ECCCcC--------------CCCCeeEEEEeCccCCHHHHHHHHHHH
Confidence            99998877777777663 456775543      334421              123466999999888888888888888


Q ss_pred             hc
Q 016612          382 RT  383 (386)
Q Consensus       382 ~~  383 (386)
                      ++
T Consensus       393 ~~  394 (396)
T d2bwna1         393 DL  394 (396)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.1e-25  Score=208.72  Aligned_cols=302  Identities=20%  Similarity=0.209  Sum_probs=189.8

Q ss_pred             hHHHHHHHHHhhcCCC-c-eEEeCcHHHHHHHH-HH----hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD-R-ALCFTSGMAALAAV-TH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~-~i~~~~gt~al~~~-~~----~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..+++++.+++++|++ + +++++++|++++.+ .+    .+++||+|+++++.|+++...++ .++..|++++.++.+ 
T Consensus        49 ~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~  127 (391)
T d1p3wa_          49 AVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLAPQR  127 (391)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHH-HHHHTTCEEEEECCCT
T ss_pred             HHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHH-HHHHcCCEEEEeCCCC
Confidence            4567888999999998 4 44555556888643 33    36899999999999999877664 455779999999864 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~  202 (386)
                          |+++++++++++|++|++++++|+||.+.|+++|.++|+++|+++++|++++.|..+ +....+.|++++|++||+
T Consensus       128 ~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~  207 (391)
T d1p3wa_         128 NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY  207 (391)
T ss_dssp             TSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTT
T ss_pred             CCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhcccccccccccccc
Confidence                789999999999999999999999999999999999999999999999999988764 555678999999999998


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHhhhh------cCCCCCh-hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcc
Q 016612          203 AGHSDVMAGVLAVKGERLAKELYFLQNA------EGSGLAP-FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  275 (386)
Q Consensus       203 ~g~~g~~~G~i~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  275 (386)
                       |+.|  .|+++.+++.+.. .......      ...+... .....+...+...........+..+.+...+.      
T Consensus       208 -g~~g--~g~~~~~~~~~~~-~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~------  277 (391)
T d1p3wa_         208 -GPKG--IGALYVRRKPRVR-IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLW------  277 (391)
T ss_dssp             -SCSS--CEEEEECBTTBCC-CCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             -CCCc--eEEEEEecchhcc-cCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHH------
Confidence             6666  5888887653322 1111000      0111111 11111111111111111122222222333322      


Q ss_pred             eEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcC
Q 016612          276 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  355 (386)
Q Consensus       276 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~  355 (386)
                          ++|..+++..+..........++.+..+... .+.+...+.  ++.++.|.++...    ...    +.......|
T Consensus       278 ----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~v~~G~~c~~~----~~~----~~~~l~~~g  342 (391)
T d1p3wa_         278 ----NGIKDIEEVYLNGDLEHGAPNILNVSFNYVE-GESLIMALK--DLAVSSGSACTSA----SLE----PSYVLRALG  342 (391)
T ss_dssp             ----HTTTTSTTEEECSCTTTSCTTEEEEEETTSC-HHHHHHHTT--TEECBCCCC----------C----CCHHHHHHT
T ss_pred             ----HHHHhhcCeeecccccccCceEEEEEeCCCC-hHHHHHHhC--CCEEEccccccCC----ccc----hhHHHHHcC
Confidence                2233333333322233334566777765543 556666665  4445555432111    000    111222333


Q ss_pred             CC----CCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          356 LT----EDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       356 ~~----~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                      +.    .++||||++.    +|++.+++.|++++++
T Consensus       343 ~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~  378 (391)
T d1p3wa_         343 LNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR  378 (391)
T ss_dssp             CCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            32    3789999975    6777777777777765

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.8e-25  Score=206.69  Aligned_cols=325  Identities=16%  Similarity=0.183  Sum_probs=227.9

Q ss_pred             ceeeccCCCCCCCCCcccc-eeeeeeeecCCCCCCC-CccccCC--CCc-hHHHHHHHHHhhcCCCceEEeCcHHHHHH-
Q 016612           11 TLLMNFSNEFDPYGALSTP-LYQTATFKQPSATENG-PYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAALA-   84 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~gt~al~-   84 (386)
                      .+.++++ +|+|+|....| +.++...   .+...+ ....++.  |.+ ..+++++.+++++|.+.+++++||+.|.. 
T Consensus        45 ~~~l~f~-s~dYLGl~~hp~v~~a~~~---a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~  120 (401)
T d1fc4a_          45 SHVINFC-ANNYLGLANHPDLIAAAKA---GMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGG  120 (401)
T ss_dssp             CEEEECC-CSCTTSCTTCHHHHHHHHH---HHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHT
T ss_pred             CEEEEEE-ccccccccCCHHHHHHHHH---HHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHH
Confidence            4578999 99999987444 4332111   111111 1222332  554 78999999999999999999999998865 


Q ss_pred             HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC------CCceEEEEeCCCCCCcccccH
Q 016612           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQICDI  158 (386)
Q Consensus        85 ~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~l  158 (386)
                      ++.++.+++|.|++....|.+...    .+...+.++..++..|.+++++.+.      +...+|++++..++.|.+.|+
T Consensus       121 ~i~~l~~~~d~i~~d~~~h~s~~~----G~~~~~a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L  196 (401)
T d1fc4a_         121 LFETLLGAEDAIISDALNHASIID----GVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANL  196 (401)
T ss_dssp             THHHHCCTTCEEEEETTCCHHHHH----HHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCH
T ss_pred             HHHHhcCCCcEEEeCCcchHHHHc----cccccCceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhh
Confidence            677789999999999999988753    3345666788888888887776653      355688889999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCCCCCCccCC---------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh--
Q 016612          159 RKIAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--  227 (386)
Q Consensus       159 ~~i~~la~~~~~~li~D~a~~~~~~~~~---------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~--  227 (386)
                      ++|.++|++||+++|+||+|+.+.+...         .....|++++|++|.++|+.   +|++.++ +++.+.++..  
T Consensus       197 ~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~---Gg~v~g~-~~~~~~l~~~~~  272 (401)
T d1fc4a_         197 KGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAAR-KEVVEWLRQRSR  272 (401)
T ss_dssp             HHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEEC-HHHHHHHHHHCH
T ss_pred             hHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCC---cccccCC-HHHHHHHHcCCh
Confidence            9999999999999999999987765421         12257999999999996644   5888876 5565555433  


Q ss_pred             hhhcCCCCChhhHHHHHhcCC---cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEE
Q 016612          228 QNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  304 (386)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~  304 (386)
                      ....+..+++....+....++   ....+.+++.++...+.+.+.+..         +...          ...++++.+
T Consensus       273 ~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g---------~~~~----------~~~~pIv~v  333 (401)
T d1fc4a_         273 PYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG---------FTLA----------GADHAIIPV  333 (401)
T ss_dssp             HHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT---------CCBC----------CSSSSEEEE
T ss_pred             hhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccC---------CccC----------CCCCCEEEE
Confidence            223455666655555544332   224456677777777777777653         1100          224678888


Q ss_pred             EeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHH
Q 016612          305 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  380 (386)
Q Consensus       305 ~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~  380 (386)
                      .+.+...+..+.+.|.+.|+.+.+      +.+|..              +.+...+|++++.    ++++++++.|+++
T Consensus       334 ~~~~~~~a~~~~~~L~~~Gi~v~~------i~~PtV--------------p~g~~~lRi~~~a~hT~edId~~v~al~ev  393 (401)
T d1fc4a_         334 MLGDAVVAQKFARELQKEGIYVTG------FFYPVV--------------PKGQARIRTQMSAAHTPEQITRAVEAFTRI  393 (401)
T ss_dssp             EEECHHHHHHHHHHHHHTTEECCE------ECTTSS--------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHCCceEEe------ECCCCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            888887788899999889987653      334421              1234559999964    7777777777777


Q ss_pred             HhcCCC
Q 016612          381 LRTGPL  386 (386)
Q Consensus       381 l~~~~~  386 (386)
                      .++.++
T Consensus       394 ~~~lg~  399 (401)
T d1fc4a_         394 GKQLGV  399 (401)
T ss_dssp             HHHTTS
T ss_pred             HHHhCC
Confidence            777653

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1.2e-26  Score=210.58  Aligned_cols=304  Identities=11%  Similarity=0.095  Sum_probs=190.8

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCc-hHHHHHHHHHhhcCCCceEEeCcHH-HHHHHHHHh
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDKADRALCFTSGM-AALAAVTHL   89 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g~~~~i~~~~gt-~al~~~~~~   89 (386)
                      .++.|+.+.+.|+. ++++.++  . ..++......+|...|.+ +|+++.+++....-..+.|++++|+ +++.+++  
T Consensus        20 d~~~l~~~enp~~~-p~~i~~~--~-~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~--   93 (334)
T d2f8ja1          20 DKTYLALNENPFPF-PEDLVDE--V-FRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM--   93 (334)
T ss_dssp             CSEECSSCCCSSCC-CHHHHHH--H-HHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHH--
T ss_pred             CceEEECCCCCCCC-CHHHHHH--H-HHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHh--
Confidence            46667655444552 3333332  1 111222222344333765 6666666654432122566677776 7777554  


Q ss_pred             cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcC
Q 016612           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG  169 (386)
Q Consensus        90 ~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~  169 (386)
                       ++||+|++++|+|+.+.    .+++..|++++.++.++-....+...++++++++++|+||||.+.+.+.|.+++ +++
T Consensus        94 -~~~d~v~i~~P~y~~~~----~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~~  167 (334)
T d2f8ja1          94 -LMFDRSVFFPPTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERIL-KTG  167 (334)
T ss_dssp             -HHSSEEEECSSCCHHHH----HHHHHHTCCEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHHHHH-TTT
T ss_pred             -hhccccccccccccccc----cchhccCCccccccccccccccccccccceEEEecccccccceeecHHHhhccc-cce
Confidence             45799999999998885    455678999999997632222234457899999999999999999988887764 579


Q ss_pred             CEEEEeCCCCCCCcc----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHh
Q 016612          170 ALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (386)
Q Consensus       170 ~~li~D~a~~~~~~~----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
                      +++|+||++......    .....+..+++.|+||++ +.+|+|+||++++ +.+.+.+......  ...+...+.++..
T Consensus       168 ~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~-~~~i~~l~~~~~~--~~~s~~~~~~a~~  243 (334)
T d2f8ja1         168 AFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVAS-EKFIDAYNRVRLP--FNVSYVSQMFAKV  243 (334)
T ss_dssp             CEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTS-SCTTTCEEEEEEC-HHHHHHHHHHSCT--TCSCHHHHHHHHH
T ss_pred             eEEeecccchhhcccccccccccCceEEEEecCcccc-chhhhhhhhcccc-hHHHHHHHHhhcc--cccchhhhhhccc
Confidence            999999997532221    222345679999999998 5578999999996 5565555554432  3444544444333


Q ss_pred             cC---CcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcc
Q 016612          246 GV---KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  322 (386)
Q Consensus       246 ~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  322 (386)
                      .+   +.+....+.+.++.+.+.+.|++..         +      .+.    ++.|+++++.++.. ..+++.+.+...
T Consensus       244 ~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g---------~------~~~----~~~g~f~~~~~~~~-~~~~~~~~L~~~  303 (334)
T d2f8ja1         244 ALDHREIFEERTKFIVEERERMKSALREMG---------Y------RIT----DSRGNFVFVFMEKE-EKERLLEHLRTK  303 (334)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHT---------C------EEC----CCCSSEEEEECCHH-HHHHHHHHHHHT
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHCC---------C------eEC----CCCceEEEEECCCC-CHHHHHHHHHHC
Confidence            22   2233445555666666666666542         1      111    23466777777654 477888888888


Q ss_pred             eeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHH
Q 016612          323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDK  379 (386)
Q Consensus       323 gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~  379 (386)
                      |+.++.                            -+++||||++. +++++++++|++
T Consensus       304 GI~vr~----------------------------~~~~vRis~g~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         304 NVAVRS----------------------------FREGVRITIGKREENDMILRELEV  333 (334)
T ss_dssp             TEECEE----------------------------ETTEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCEECC----------------------------CCCeEEEEcCCHHHHHHHHHHHhc
Confidence            886642                            14579999974 445566665543

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.94  E-value=3.6e-26  Score=211.86  Aligned_cols=288  Identities=18%  Similarity=0.158  Sum_probs=186.0

Q ss_pred             chHHHHHHHHHhhc---C-C--C-ceEEeCcHH-HHHHH-HHHh--------cCCCCEEEecCCCCCcHHHHHhhhcccC
Q 016612           55 PTRDALESLLAKLD---K-A--D-RALCFTSGM-AALAA-VTHL--------LGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (386)
Q Consensus        55 ~~~~~l~~~l~~~~---g-~--~-~~i~~~~gt-~al~~-~~~~--------~~~g~~Vlv~~~~~~~~~~~~~~~~~~~  117 (386)
                      .+..+|++.++++.   | +  + ..|++++|+ +++++ +.++        +.|||+|+++.|.|+.|...    .+..
T Consensus       100 ~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~----~~~~  175 (425)
T d2hoxa1         100 FISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ----TKYF  175 (425)
T ss_dssp             TCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH----HHHS
T ss_pred             cCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHH----HHHc
Confidence            34455666666553   3 2  3 457777775 88874 5555        57899999999999988643    3333


Q ss_pred             CcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccC-CCCCCccEEEe
Q 016612          118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMH  196 (386)
Q Consensus       118 g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~~~di~~~  196 (386)
                      +.+...+.. |.+.+++.++++++++++++||||||.+..       +..+++.+|.|++|..+.+.. +.....+|++.
T Consensus       176 ~~~~~~~~~-D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~~~~~~Ivl~  247 (425)
T d2hoxa1         176 DKKGYVWAG-NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILLF  247 (425)
T ss_dssp             CBTTEEEEE-EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCSCBCCSEEEE
T ss_pred             CCCCCccCC-CHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhhhcCCeEEEE
Confidence            433333332 778888888899999999999999998742       223589999999997655432 23346789999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCC---------------cHHHHHHHHHHHH
Q 016612          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---------------TMALRVEKQQDNA  261 (386)
Q Consensus       197 S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  261 (386)
                      |+||.+ |.+|+|+||++++++.+.+.+.........+.+...+.++...++               .+....+.+.++.
T Consensus       248 S~SK~f-glaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~  326 (425)
T d2hoxa1         248 TMSKFT-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERW  326 (425)
T ss_dssp             EHHHHT-SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHH
T ss_pred             eCHHhc-cCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 677999999999888887777666555555566655544433321               2233344455556


Q ss_pred             HHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhcCcceeccCCCCccccccccc
Q 016612          262 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPC  339 (386)
Q Consensus       262 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~  339 (386)
                      +.+.+.+.+..   ....+.++.-.............+.+.++....  ..+..+++   +..||.+++|..+       
T Consensus       327 ~~l~~~L~~~~---~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL---~e~gI~v~pGs~F-------  393 (425)
T d2hoxa1         327 VNITALLDQSD---RFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTF---QNGRINTQNGVGF-------  393 (425)
T ss_dssp             HHHHHHHTTSS---SEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHH---HHTTEECEEGGGG-------
T ss_pred             HHHHHHHHhcC---CceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHH---HhCCEEEEechhc-------
Confidence            66667776654   333333332211111111223345566777633  23344444   4457777777652       


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEec--cCChHHHHHHHHHHHhc
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDLISDLDKALRT  383 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~i~~l~~~l~~  383 (386)
                                     |.++++||||+.  .++.++++++|++.+++
T Consensus       394 ---------------G~~~~yvRisl~~~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         394 ---------------EASSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             ---------------TSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             ---------------CCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence                           335689999985  36669999999998864

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.3e-25  Score=202.70  Aligned_cols=270  Identities=17%  Similarity=0.195  Sum_probs=174.6

Q ss_pred             HHHHHHHHHhhcCCC-ceEEeCcHH-HHHH-HHHHhcCCCC-EEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~gt-~al~-~~~~~~~~g~-~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      ..++++.+++++|.+ +.|++++|+ +++. ++.++++||| .|+++.|.|..+.    ..++..|.+++.++..     
T Consensus        58 ~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~----~~~~~~g~~v~~~~~~~~~~~  133 (354)
T d1fg7a_          58 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVECRTVPTLDNWQL  133 (354)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHH----HHHHHHTCEEEECCCCTTSCC
T ss_pred             HHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccch----hhhhccCceeecccccccccc
Confidence            357888889999987 566666665 8887 5566889998 5889999998885    4556678888888754     


Q ss_pred             CHHHHHhhhCCCceEEEEeCCCCCCcccccHH---HHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCCCccEEEeccc
Q 016612          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIR---KIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSAT  199 (386)
Q Consensus       128 d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~---~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~di~~~S~s  199 (386)
                      |+++++..+ ++++++++++|+||||.+.+.+   .+.+.+ +++.++++||++......     ........+++.|+|
T Consensus       134 d~~~l~~~~-~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~-~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~S  211 (354)
T d1fg7a_         134 DLQGISDKL-DGVKVVYVCSPNNPTGQLINPQDFRTLLELT-RGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLS  211 (354)
T ss_dssp             CHHHHHTSC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHH-TTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESS
T ss_pred             chhhhhhcc-cccceeeccCCCccceeEeeecccccccccc-cccccccccccchhhccccccchhhcccccceEEeCCc
Confidence            788888876 4799999999999999998743   444443 357888888887532211     122335678899999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHhhCCCc
Q 016612          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRV  274 (386)
Q Consensus       200 K~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~  274 (386)
                      |.+ |.+|+|+||+++++ ++.+.+......  ...+...+..+...+..     ...+..+..+..+.+.+.+.+.+.+
T Consensus       212 K~~-~laGlRiGy~i~~~-~~i~~l~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~  287 (354)
T d1fg7a_         212 KAF-ALAGLRCGFTLANE-EVINLLMKVIAP--YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCV  287 (354)
T ss_dssp             STT-CCGGGCCEEEEECH-HHHHHHHHHSCS--SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             ccc-CCCccccccccccc-hhhhhhhhhcCc--cchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCc
Confidence            999 66789999999874 455545443332  23344333333222221     1222233334444455555544311


Q ss_pred             ceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhc
Q 016612          275 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  354 (386)
Q Consensus       275 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~  354 (386)
                      ..             +    .++.++++++.+++   ...+.+.|..+|+.++.+..+.                     
T Consensus       288 ~~-------------~----~p~~~~f~~~~~~~---~~~~~~~L~~~gIlvr~~~~~~---------------------  326 (354)
T d1fg7a_         288 EQ-------------V----FDSETNYILARFKA---SSAVFKSLWDQGIILRDQNKQP---------------------  326 (354)
T ss_dssp             EE-------------E----CCCSSSEEEEEETT---HHHHHHHHHHTTEECEECTTST---------------------
T ss_pred             ce-------------e----CCCCceEEEEeCCC---HHHHHHHHHHCCcEEecCCCCC---------------------
Confidence            00             0    12356788888865   3456677777788876655311                     


Q ss_pred             CCCCCeEEEEecc-CChHHHHHHHH
Q 016612          355 GLTEDLVRISVGI-EDVNDLISDLD  378 (386)
Q Consensus       355 ~~~~~~iRis~~~-~~~~~~i~~l~  378 (386)
                      + -++++|||++. ++++.+++.|+
T Consensus       327 ~-~~~~lRisigt~ee~~~~l~aLk  350 (354)
T d1fg7a_         327 S-LSGCLRITVGTREESQRVIDALR  350 (354)
T ss_dssp             T-CTTEEEEECCCHHHHHHHHHHHH
T ss_pred             C-CCCEEEEEeCCHHHHHHHHHHHh
Confidence            1 25789999974 55555665554

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.7e-25  Score=204.50  Aligned_cols=323  Identities=18%  Similarity=0.182  Sum_probs=228.0

Q ss_pred             ceeeccCCCCCCCCCcccceeeeeeeecCCCCCCC-CccccCC--CC-chHHHHHHHHHhhcCCCceEEeCcHHHHH-HH
Q 016612           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG-PYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA   85 (386)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al-~~   85 (386)
                      .++++++ +|+|+|....|.+......  .+.+.+ ...-++.  |. +...++|+.+++++|.+..+++++|+.+. .+
T Consensus        38 ~~~l~f~-s~dYLGl~~~p~v~~a~~~--a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~  114 (383)
T d1bs0a_          38 RQYLNFS-SNDYLGLSHHPQIIRAWQQ--GAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAV  114 (383)
T ss_dssp             EEEEECS-CCCTTSGGGCHHHHHHHHH--HHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHH
T ss_pred             eEEEEEE-cccccccCCCHHHHHHHHH--HHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCceEEecccchhhHHH
Confidence            3688999 9999998766644321111  111111 1222333  55 47899999999999999999999999775 56


Q ss_pred             HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCcccccHHHHH
Q 016612           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIA  162 (386)
Q Consensus        86 ~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~l~~i~  162 (386)
                      +.++..++|.|++....|.+...    ..+..+.+++.++..|.+++++.+.   ++.++|+++.+.+++|.+.|+++|.
T Consensus       115 i~al~~~~d~v~~d~~~h~si~~----g~~~~~~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~  190 (383)
T d1bs0a_         115 IAAMMAKEDRIAADRLSHASLLE----AASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQ  190 (383)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHHH----HHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHH
T ss_pred             HHhhcCCCceEEeeccccHHHhh----ccccCCCcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHH
Confidence            77789999999999998877753    3446778889999999999988774   5677999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCCCCCCccCC-------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh--hhcCC
Q 016612          163 EMAHAHGALLLVDNSIMSPVLSRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGS  233 (386)
Q Consensus       163 ~la~~~~~~li~D~a~~~~~~~~~-------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~--~~~~~  233 (386)
                      ++|++||+++++||+|+.+.+...       .....++++.|++|.++++    +|++.++. .+.+.++...  ...+.
T Consensus       191 ~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~----Gg~v~~~~-~~~~~l~~~~~~~~~s~  265 (383)
T d1bs0a_         191 QVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS----GAAVLCSS-TVADYLLQFARHLIYST  265 (383)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC----CEEEEECH-HHHHHHHHHCHHHHSSB
T ss_pred             HHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccccccccccccc----ccccccch-hHHHHHHhhchhhhhcc
Confidence            999999999999999998876522       1234678899999998543    58888764 4555554332  23445


Q ss_pred             CCChhhHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC
Q 016612          234 GLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  308 (386)
Q Consensus       234 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~  308 (386)
                      ..++....++..+++.     ...+..+..++...+...+.+.+         +.      +    ..+.++++.+.+++
T Consensus       266 ~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g---------~~------~----~~~~s~Ii~v~~g~  326 (383)
T d1bs0a_         266 SMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP---------FT------L----ADSCSAIQPLIVGD  326 (383)
T ss_dssp             CCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS---------CE------E----CSCCSSBCCEEEES
T ss_pred             cccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcC---------Cc------c----CCCCCCEEEEEECC
Confidence            5666555554444322     22344455566666666665543         10      0    12346777788878


Q ss_pred             HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          309 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       309 ~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      +..+..+.+.|..+|+.+++      +.+|..              +.+...+|++++..++++.|+.+.++|+.+
T Consensus       327 ~~~a~~~~~~L~~~Gi~v~~------~~~PtV--------------p~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         327 NSRALQLAEKLRQQGCWVTA------IRPPTV--------------PAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             HHHHHHHHHHHHHTTEECCE------ECTTSS--------------CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCceEEE------EcCCCC--------------CCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            77788888899888987654      233421              113456999999988888888888888653

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=6.1e-26  Score=208.40  Aligned_cols=159  Identities=21%  Similarity=0.238  Sum_probs=135.1

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC------
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------  127 (386)
                      ++.+.+++.+++++|.++.+++++|++|+. ++.++++|||+|++++++|.+...    .++..|.+++.++..      
T Consensus        47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~----~~~~~g~~v~~v~~~~~~~~~  122 (364)
T d2e7ja1          47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYV----AAERAGLNIALVPKTDYPDYA  122 (364)
T ss_dssp             CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH----HHHHTTCEEEEECCCCTTTCC
T ss_pred             HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccch----HHHhccceEEEeeeccccccc
Confidence            378889999999999999999999999986 567789999999999999988753    345788999988763      


Q ss_pred             -CHHHHHhhhC-----CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccc
Q 016612          128 -DLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (386)
Q Consensus       128 -d~~~l~~~~~-----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK  200 (386)
                       |+++++++++     .++++|++++|+||+|.+.|+++|.++|++||+++++|++|+.+..+ +..+.++|++++|+||
T Consensus       123 i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K  202 (364)
T d2e7ja1         123 ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHK  202 (364)
T ss_dssp             CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHH
T ss_pred             cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeecccc
Confidence             6888988885     34568999999999999999999999999999999999999988764 3334589999999999


Q ss_pred             ccccCCCceEEEEEEcChh
Q 016612          201 FIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~  219 (386)
                      +++++++  +|+++++++.
T Consensus       203 ~~~~~g~--~g~l~~~~~~  219 (364)
T d2e7ja1         203 SMAASGP--IGVMGMKEEW  219 (364)
T ss_dssp             HSSCCSS--CEEEEECTTT
T ss_pred             ccCCCCC--EEEEEECHHH
Confidence            9976653  7999988653

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.93  E-value=1.2e-24  Score=202.49  Aligned_cols=294  Identities=21%  Similarity=0.217  Sum_probs=196.1

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHH-HHHHHHH-H----hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGM-AALAAVT-H----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt-~al~~~~-~----~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (386)
                      ..++.++.+++++|.+  +.+++++++ ++++.+. .    .+++|++|++++.+|++....|...++..|.++..++..
T Consensus        67 ~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~  146 (408)
T d1t3ia_          67 AYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD  146 (408)
T ss_dssp             HHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC
T ss_pred             HHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecc
Confidence            5677889999999985  555555554 7776443 2    467999999999999999888888888889999988853


Q ss_pred             -----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccc
Q 016612          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (386)
Q Consensus       128 -----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~  201 (386)
                           +.+.+++.++++|++|.+++.+|.+|.+.|+++|.++|+++|+++++|.+|+.|..+ +....++|++++|+|||
T Consensus       147 ~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~  226 (408)
T d1t3ia_         147 EQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKM  226 (408)
T ss_dssp             TTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGT
T ss_pred             ccccccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccCCceEEeccccc
Confidence                 789999999999999999999999999999999999999999999999999999875 44456899999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhh--------------------hcCCCCChhh-HHHHHhcCCcHHH-HHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQN--------------------AEGSGLAPFD-CWICLRGVKTMAL-RVEKQQD  259 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~  259 (386)
                      + ||.|  +|+++.+++.. ........                    ....+..... ...+..+++.+.. -.++..+
T Consensus       227 ~-gp~G--~g~l~v~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~  302 (408)
T d1t3ia_         227 C-APTG--IGFLYGKEEIL-EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHN  302 (408)
T ss_dssp             T-SCTT--CEEEEECHHHH-HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             c-CCCC--ccccccchhhh-hcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            6 6777  69999885433 22211100                    0011122222 2222222221111 1122223


Q ss_pred             HHHHHH----HHHhhCCCcceEecCCCCCCCchhhhhh--ccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccc
Q 016612          260 NAQKIA----EFLASHPRVKKVNYAGLPEHPGHELHYS--QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKS  333 (386)
Q Consensus       260 ~~~~l~----~~l~~~~~~~~~~~~~l~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~  333 (386)
                      +...+.    +.+.+.+              +..++..  ....++++++|.++..+ .+.+.+.|...|+.++.|.+++
T Consensus       303 ~~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~iv~f~~~~~~-~~~v~~~L~~~gI~v~~G~~c~  367 (408)
T d1t3ia_         303 YEVELTHYLWQGLGQIP--------------QLRLYGPNPKHGDRAALASFNVAGLH-ASDVATMVDQDGIAIRSGHHCT  367 (408)
T ss_dssp             HHHHHHHHHHHHHHTCT--------------TEEEESCCGGGSCBCSEEEEEETTBC-HHHHHHHHHTTTEECBCSCTTC
T ss_pred             HHHHHHhHHhhhhccCc--------------cccccCCCccccCcceEEEEEeCCCC-HHHHHHHHhhCCcEEecCcccc
Confidence            333333    3333333              2222211  11235789999987543 5567777778889888887632


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          334 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                         .|. +          ...+ .++.||||++.    +|++.+++.|+++++.
T Consensus       368 ---~~~-~----------~~~~-~~g~vRiS~~~ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         368 ---QPL-H----------RLFD-ASGSARASLYFYNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             ---HHH-H----------HHTT-CCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---cHH-H----------Hhhc-CCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence               111 0          0111 25679999986    5555555555555543

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.93  E-value=8.3e-26  Score=210.21  Aligned_cols=172  Identities=12%  Similarity=0.078  Sum_probs=130.1

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcCC---CceEEeCc--H-HHH---HH-HHHHhcCCCCEEEecCCCCCcHHHHHh
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDKA---DRALCFTS--G-MAA---LA-AVTHLLGTGEEIVAGDDLYGGTDRLLS  111 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g~---~~~i~~~~--g-t~a---l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~  111 (386)
                      ....+|.+. |.| +|+++.+++.+..+.   ++.++++.  + +.+   +. ++..+++|||+|++++|.|+.+.    
T Consensus        62 ~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~----  137 (401)
T d7aata_          62 KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHT----  137 (401)
T ss_dssp             TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHH----
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchh----
Confidence            334579988 987 899999999877653   23343332  2 233   33 33457999999999999999996    


Q ss_pred             hhcccCCcEEEEeCCC-------CHHHHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCC
Q 016612          112 RVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       112 ~~~~~~g~~~~~v~~~-------d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~  178 (386)
                      .+++..|.+++.++..       +.+.+.+.+.   ++++++++++||||||.+++   +++|.++|++|++++|+||+|
T Consensus       138 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y  217 (401)
T d7aata_         138 PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY  217 (401)
T ss_dssp             HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccc
Confidence            5566889999988862       6677766653   68899999999999999985   789999999999999999999


Q ss_pred             CCCCccC----C-------CCCCccEEEeccccccccCCCceEEEEEEcChhH
Q 016612          179 MSPVLSR----P-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       179 ~~~~~~~----~-------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      ..-.+..    .       ......+++.|+||.+ +.+|+|+||++++...+
T Consensus       218 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~RiG~~~~~~~~~  269 (401)
T d7aata_         218 QGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAFTVICRDA  269 (401)
T ss_dssp             TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEEECSSH
T ss_pred             hhhhcCCcccchhhhhhhhhhhcccceeEeccccc-eeeccccceeecchHHH
Confidence            7544321    0       1123457888999998 56689999999986544

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=1.2e-24  Score=199.52  Aligned_cols=199  Identities=20%  Similarity=0.215  Sum_probs=144.5

Q ss_pred             hHHHHHHHHHhhcCCC---ceEEeCcHHHHHHHHHHhcCCCCEEE-ec-CCCCCcHHHHHhhhcccCCcEEEEeCCCCHH
Q 016612           56 TRDALESLLAKLDKAD---RALCFTSGMAALAAVTHLLGTGEEIV-AG-DDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD  130 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~gt~al~~~~~~~~~g~~Vl-v~-~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~  130 (386)
                      ...++++...+.++.+   +++++++|++|+.+++..+.+||.|+ ++ .|.|+++..    .++..|+++  ++.+|++
T Consensus        51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~----~~~l~g~~~--v~~~d~e  124 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIER----SCKIVNAKY--FESDKVG  124 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHH----HHHHTTCEE--EEESCHH
T ss_pred             hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHH----HHHhcCCeE--ECCCCHH
Confidence            3556666666666544   57777888899875444455666654 44 578988864    444567765  4556999


Q ss_pred             HHHhhhCCCceEEEEeCCCCCCc-ccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-----CCCCCCccEEEecccccccc
Q 016612          131 EVASAIGPWTKLVWVESPTNPRQ-QICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAG  204 (386)
Q Consensus       131 ~l~~~~~~~~~~v~~~~~~nptG-~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~di~~~S~sK~~~g  204 (386)
                      +++++++++|++|++++|+||++ ...++++|+++|++||+++++|++|+.+.+.     .+...++|++++|+||+++|
T Consensus       125 ~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g  204 (366)
T d2aeua1         125 EILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG  204 (366)
T ss_dssp             HHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred             HHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEecccccccc
Confidence            99999999999999999988754 4578999999999999999999999754321     22345889999999999865


Q ss_pred             CCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcH-HHHHHHHHHHHHHH
Q 016612          205 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM-ALRVEKQQDNAQKI  264 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  264 (386)
                      +   |+||++++ +++.+.+...+...+...+++.++++.++++.+ ..|+++..++.+.+
T Consensus       205 ~---~~G~i~~~-~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i  261 (366)
T d2aeua1         205 P---RGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNF  261 (366)
T ss_dssp             C---SCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             c---ceeEEEec-HHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4   58999997 556677777777777778888787776665432 23444555555443

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.91  E-value=2.8e-24  Score=200.50  Aligned_cols=172  Identities=16%  Similarity=0.081  Sum_probs=122.9

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcCC----Cc-eEE-eCcHHHHHH-H---HH----HhcCCCCEEEecCCCCCcHH
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDKA----DR-ALC-FTSGMAALA-A---VT----HLLGTGEEIVAGDDLYGGTD  107 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~-~i~-~~~gt~al~-~---~~----~~~~~g~~Vlv~~~~~~~~~  107 (386)
                      ...++|.+. |.| +|+++.+++.+..+.    +. .++ +.+++.++. +   +.    ++++|||+|++++|.|+.+.
T Consensus        65 ~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~  144 (412)
T d1ajsa_          65 SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN  144 (412)
T ss_dssp             TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH
T ss_pred             CcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhH
Confidence            345679988 998 899999998876553    22 233 334444442 1   11    13689999999999999986


Q ss_pred             HHHhhhcccCCcEEEEeCC--------CCHHHHHhh---hCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEE
Q 016612          108 RLLSRVTPKTGVVVKRVNT--------CDLDEVASA---IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLL  173 (386)
Q Consensus       108 ~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~---~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li  173 (386)
                          .+++..|.+.+.++.        .|.+.+++.   ..++++++++++||||||.+++   +++|+++|++||++||
T Consensus       145 ----~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii  220 (412)
T d1ajsa_         145 ----GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPF  220 (412)
T ss_dssp             ----HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             ----HHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEE
Confidence                445566765443321        155555544   4578899999999999999986   8899999999999999


Q ss_pred             EeCCCCCCCccC-----------CCCCCccEEEeccccccccCCCceEEEEEEcChhH
Q 016612          174 VDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       174 ~D~a~~~~~~~~-----------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      +||+|..-.+..           .......+++.|+||.++ .+|+|+||+++.....
T Consensus       221 ~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~R~G~~~~~~~~~  277 (412)
T d1ajsa_         221 FDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG-LYNERVGNLTVVAKEP  277 (412)
T ss_dssp             EEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGGGCEEEEEEECSSH
T ss_pred             ecHhhhhhhcCCcccchhhhhhhhhhccccccccccccccc-CCCCCccccccchhHH
Confidence            999997543321           011245688889999984 5678999999986543

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.91  E-value=6.6e-24  Score=197.75  Aligned_cols=171  Identities=12%  Similarity=0.081  Sum_probs=126.8

Q ss_pred             CCCccccCC-CCc-hHHHHHHHHHhhcCC---CceEEe--CcH-HHHHH---HHHHhcCCCCEEEecCCCCCcHHHHHhh
Q 016612           44 NGPYDYTRS-GNP-TRDALESLLAKLDKA---DRALCF--TSG-MAALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSR  112 (386)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g~---~~~i~~--~~g-t~al~---~~~~~~~~g~~Vlv~~~~~~~~~~~~~~  112 (386)
                      ...++|.+. |.+ +|+++.+++.+..+.   ++.+++  ++| ..++.   .+...+.|||.|++++|.|+.+.    .
T Consensus        64 ~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~----~  139 (412)
T d1yaaa_          64 SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHM----A  139 (412)
T ss_dssp             TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHH----H
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhH----H
Confidence            445679988 987 899999988776653   222222  223 34432   22346789999999999999996    5


Q ss_pred             hcccCCcEEEEeCCC-------CHHHHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCC
Q 016612          113 VTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (386)
Q Consensus       113 ~~~~~g~~~~~v~~~-------d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~  179 (386)
                      .++..|.+++.++..       +.+.+.+.+.   ++++++++++||||||.+++   +++|.++|+++++++|+|++|.
T Consensus       140 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~  219 (412)
T d1yaaa_         140 IFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ  219 (412)
T ss_dssp             HHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceee
Confidence            566888888888752       5566655543   56789999999999999985   8899999999999999999997


Q ss_pred             CCCccC--------------CCCCCccEEEeccccccccCCCceEEEEEEcChh
Q 016612          180 SPVLSR--------------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       180 ~~~~~~--------------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      .-.+..              ....+..+++.|+||.+ +.+|+|+||++++++.
T Consensus       220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~  272 (412)
T d1yaaa_         220 GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERVGCFHLALTK  272 (412)
T ss_dssp             TTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCEEEEEEECCS
T ss_pred             ecccCCcccchhhhhhhhhccccCCCeEEEEecCCcc-ccCcCceEEEEEchhh
Confidence            443321              11224569999999999 5668999999998653

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.4e-24  Score=201.48  Aligned_cols=172  Identities=13%  Similarity=0.075  Sum_probs=128.7

Q ss_pred             CCCCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEe-CcHHH----HHH-HHHHhcCCCCEEEecCCCCCcHHHHHh
Q 016612           43 ENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCF-TSGMA----ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS  111 (386)
Q Consensus        43 ~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~-~~gt~----al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~  111 (386)
                      .....+|.+. |.| +|+++.+++.+..+..   +.+++ .++++    ++. .+..+++|||.|++++|.|+.+.    
T Consensus        60 ~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~----  135 (397)
T d3tata_          60 PHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHV----  135 (397)
T ss_dssp             CCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHH----
T ss_pred             cccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccH----
Confidence            3456679998 998 8999988888766542   33433 32222    233 33446899999999999999996    


Q ss_pred             hhcccCCcEEEEeCCC-------CHHHHHhhhC---CCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCC
Q 016612          112 RVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSI  178 (386)
Q Consensus       112 ~~~~~~g~~~~~v~~~-------d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~  178 (386)
                      .+++..|.+++.++..       |.+++.+.+.   ++++++++++||||||.+++   +++|.++|+++++++|+||+|
T Consensus       136 ~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y  215 (397)
T d3tata_         136 AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAY  215 (397)
T ss_dssp             HHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSC
T ss_pred             HHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhh
Confidence            5566889999998863       4555555543   67889999999999999985   788999999999999999999


Q ss_pred             CCCCccC----------CCCCCccEEEeccccccccCCCceEEEEEEcChh
Q 016612          179 MSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       179 ~~~~~~~----------~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      ..-.+..          .......+++.|+||.+ +.+|+|+||++++...
T Consensus       216 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~  265 (397)
T d3tata_         216 QGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGGLSVMCED  265 (397)
T ss_dssp             TTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH-TBTTTCCBCCEEECSS
T ss_pred             hhhccCCcccchhhhhhhhcCCceEEEecCcccc-cccCccccccccchhH
Confidence            7543320          11123569999999999 5678999999987654

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=8.3e-23  Score=188.19  Aligned_cols=159  Identities=16%  Similarity=0.145  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHHH-----HhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAVT-----HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~~-----~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  127 (386)
                      ..++.++.+++++|++  +.++++++|++++.++     ....+|+.|++....|+.....+ +.++..|++++.+|.+ 
T Consensus        45 ~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~g~~v~~vp~~~  123 (376)
T d1eg5a_          45 HMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETM-KYLSMKGFKVKYVPVDS  123 (376)
T ss_dssp             HHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-HHHHHTTCEEEECCBCT
T ss_pred             HHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHH-HHHHhcCCEEEEEcCCC
Confidence            4667789999999998  4555556678887543     24578888888888777776555 4566789999999853 


Q ss_pred             ----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCcc-CCCCCCccEEEecccc
Q 016612          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (386)
Q Consensus       128 ----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK  200 (386)
                          |+++++++++++|++|++++++|+||...|++++.++++.+  ++++++|++++.|..+ +..+.++|++++|++|
T Consensus       124 ~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K  203 (376)
T d1eg5a_         124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHK  203 (376)
T ss_dssp             TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGG
T ss_pred             CCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccce
Confidence                79999999999999999999999999999999999998665  9999999999998865 4456789999999999


Q ss_pred             ccccCCCceEEEEEEcCh
Q 016612          201 FIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~  218 (386)
                      |+ ||.|  .|+++.+++
T Consensus       204 ~~-gp~G--~~~l~~~~~  218 (376)
T d1eg5a_         204 FH-GPKG--VGITYIRKG  218 (376)
T ss_dssp             GT-SCTT--CEEEEECTT
T ss_pred             ee-cCCC--ceeEEeccC
Confidence            97 6777  577776654

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.3e-23  Score=194.82  Aligned_cols=171  Identities=16%  Similarity=0.119  Sum_probs=126.9

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCC----Cc--eEEeCcHHHHHH---HHHHhcCCCCEEEecCCCCCcHHHHHhhh
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKA----DR--ALCFTSGMAALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSRV  113 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~--~i~~~~gt~al~---~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~  113 (386)
                      ..+.|.+. |.+ +|+++.+++.+..+.    +.  .+++++|+.++.   .++..+.+||.|++++|.|+.+.    .+
T Consensus        61 ~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~----~~  136 (396)
T d2q7wa1          61 TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHK----SV  136 (396)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHH----HH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccch----HH
Confidence            34579988 987 899999998876654    22  233444444443   33446799999999999999996    56


Q ss_pred             cccCCcEEEEeCCC-------CHHHHHhh---hCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCC
Q 016612          114 TPKTGVVVKRVNTC-------DLDEVASA---IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (386)
Q Consensus       114 ~~~~g~~~~~v~~~-------d~~~l~~~---~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~  180 (386)
                      ++..|.+++.++..       +..++.+.   ..++++++++++||||||.+++   +++|.++|++|++++|+||+|..
T Consensus       137 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~  216 (396)
T d2q7wa1         137 FNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQG  216 (396)
T ss_dssp             HHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred             HHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccc
Confidence            67888999888863       34444443   3468889999999999999986   78999999999999999999974


Q ss_pred             CCccCC----------CCCCccEEEeccccccccCCCceEEEEEEcChhH
Q 016612          181 PVLSRP----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       181 ~~~~~~----------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      -.+...          ......+++.|+||.+ +.+|+|+||++++...+
T Consensus       217 l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~  265 (396)
T d2q7wa1         217 FARGLEEDAEGLRAFAAMHKELIVASSYSKNF-GLYNERVGACTLVAADS  265 (396)
T ss_dssp             SSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEEEEEECSSH
T ss_pred             cccCCccCchHhhhhhhhcccccccccccccc-cccCCCccccccchhHH
Confidence            433210          0124568888999998 55689999999986544

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=4.8e-23  Score=190.97  Aligned_cols=171  Identities=16%  Similarity=0.139  Sum_probs=127.7

Q ss_pred             CCccccCC-CCc-hHHHHHHHHHhhcCCC---ceEEeCcHHHH--HH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhccc
Q 016612           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGMAA--LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (386)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~gt~a--l~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~  116 (386)
                      ..++|++. |.| +|+++.+++....+..   +.+++++|+.+  +. .++..+.+||.|++++|.|+.+.    .+++.
T Consensus        61 ~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~----~~~~~  136 (394)
T d2ay1a_          61 TTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHV----SIMNF  136 (394)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHH----HHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchH----HHHHH
Confidence            34679988 998 8999999988766553   45666666644  43 33556899999999999999886    55567


Q ss_pred             CCcEEEEeCCC-------CHHHHHh---hhCCCceEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCc
Q 016612          117 TGVVVKRVNTC-------DLDEVAS---AIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (386)
Q Consensus       117 ~g~~~~~v~~~-------d~~~l~~---~~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~  183 (386)
                      .|.+++.++..       +.+++++   ...++++++++++||||||.+++   +++|+++|+++++++|+||+|..-.+
T Consensus       137 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~  216 (394)
T d2ay1a_         137 MGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD  216 (394)
T ss_dssp             HTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSS
T ss_pred             cCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcc
Confidence            78888887752       3444443   34467888888999999999985   78999999999999999999975433


Q ss_pred             cCC----------CCCCccEEEeccccccccCCCceEEEEEEcChhH
Q 016612          184 SRP----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       184 ~~~----------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      ...          ......+++.|+||.++ ..|+|+|++.+....+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~R~G~~~~~~~~~  262 (394)
T d2ay1a_         217 GLEEDAAGTRLIASRIPEVLIAASCSKNFG-IYRERTGCLLALCADA  262 (394)
T ss_dssp             CHHHHHHHHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEEEEECSSH
T ss_pred             cccccchhhhhhhhhccccccccccccccc-CCcccccchhhchhHH
Confidence            210          11134577888999985 4689999999986544

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.4e-22  Score=184.82  Aligned_cols=160  Identities=18%  Similarity=0.246  Sum_probs=125.4

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEe-CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~-~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      ...+++++.+++++|.+  ..|++ +|||++++ ++..++.+|+++++....+.+....  ..+...+.....+...   
T Consensus        52 ~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  129 (388)
T d1h0ca_          52 QIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAV--DIGERIGARVHPMTKDPGG  129 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHH--HHHHHHC--CBCCBCCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeec--cccccccccccccccCCcc
Confidence            36889999999999986  24544 56789987 5677899999999988887766433  3333444444444332   


Q ss_pred             --CHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 --DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 --d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                        |.+++++.+. ++++++++++.+|.||.+.|+++|.++|+++|+++++|++++.|... +....++|++++|.+|+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~  209 (388)
T d1h0ca_         130 HYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALN  209 (388)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred             ccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceeccccccccc
Confidence              6666665554 68999999999999999999999999999999999999999988764 5566799999999999999


Q ss_pred             cCCCceEEEEEEcCh
Q 016612          204 GHSDVMAGVLAVKGE  218 (386)
Q Consensus       204 g~~g~~~G~i~~~~~  218 (386)
                      ||+|  +|+++.++.
T Consensus       210 gp~g--~~~~~~~~~  222 (388)
T d1h0ca_         210 APPG--TSLISFSDK  222 (388)
T ss_dssp             CCTT--CEEEEECHH
T ss_pred             CCCc--eEEEeecHH
Confidence            9988  688887754

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.87  E-value=8.9e-21  Score=174.53  Aligned_cols=306  Identities=15%  Similarity=0.184  Sum_probs=211.3

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHH-HHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~-~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +.|..+++|+.+++++|.+.++.++|||+|+.++ .++ +++||+|+++..+|.++.    ..+...|.++++++.+   
T Consensus        32 ~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~----~ai~~~g~~p~~~d~~~~~  107 (384)
T d1b9ha_          32 GGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSS----QAAQRLGAVTVPVDVDAAT  107 (384)
T ss_dssp             TCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTT
T ss_pred             CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccc----ccccccccccccccccccc
Confidence            3478999999999999999999999999999754 444 789999999999999886    4455788888888853   


Q ss_pred             ---CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCC--CCccEEEec--ccc
Q 016612          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE--LGADIVMHS--ATK  200 (386)
Q Consensus       128 ---d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~--~~~di~~~S--~sK  200 (386)
                         |++++++.++++|++|+   +.+..|...++++|.++|+++++++|+|.+++.|...+...  ...|+.++|  .+|
T Consensus       108 ~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K  184 (384)
T d1b9ha_         108 YNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGK  184 (384)
T ss_dssp             CCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTS
T ss_pred             cccchhhhcccccccccccc---cccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccccc
Confidence               89999999999999997   55667888999999999999999999999999877542221  233555555  588


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhhhhc-----------------CCCCChhhHHHHHhcCCcHHHHHHHHHHHHHH
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAE-----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQK  263 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (386)
                      .+...   .+|+++++++++.+.++.+....                 ...++..++++....++.+....++..++.+.
T Consensus       185 ~i~~g---~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~~  261 (384)
T d1b9ha_         185 LMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTL  261 (384)
T ss_dssp             SSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccc---ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhhhh
Confidence            87543   37999999888877665554321                 12356678888888888888888888899999


Q ss_pred             HHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--CHHhHHHHHhhcCcceeccCCCCccccccccccc
Q 016612          264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  341 (386)
Q Consensus       264 l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~  341 (386)
                      +.+.+.+.+.+   .........        ......++.+.+.  ....-+++.+.|+..||.++... ..+...|++.
T Consensus       262 y~~~L~~~~~i---~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y-~plh~~~~~~  329 (384)
T d1b9ha_         262 LSRLLGAIDGV---VPQGGDVRA--------DRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAF-RAIYRTDAFW  329 (384)
T ss_dssp             HHHHHHTSTTC---EECCCCTTC--------CBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECC-CCGGGSHHHH
T ss_pred             hhhhhhccccc---ccccccccc--------cccccccccceecccccccHHHHHHHHHHCCCCeeeeC-cchhcCHHHH
Confidence            99998876532   111111110        0112234455543  34445678999988898765432 2233333221


Q ss_pred             cC-----------CCCCHHHHHhcCCCCCeEEEEecc-----CChHHHHHHHHHHHhcC
Q 016612          342 SH-----------ASIPVEVRQARGLTEDLVRISVGI-----EDVNDLISDLDKALRTG  384 (386)
Q Consensus       342 ~~-----------~~~~~~~~~~~~~~~~~iRis~~~-----~~~~~~i~~l~~~l~~~  384 (386)
                      ..           ..+|...    -+.+..|.+-+..     ++++.+++.|+++++++
T Consensus       330 ~~~~~~~~~~~~~~~~Pna~----~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~~  384 (384)
T d1b9ha_         330 ELGAPDESVDAIARRCPNTD----AISSDCVWLHHRVLLAGEPELHATAEIIADAVARA  384 (384)
T ss_dssp             HSSCCSSCHHHHHHTCHHHH----HHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             hcCCCcccccccccCCHHHH----HHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence            10           0011110    1112446676542     25677888888887764

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=5.5e-20  Score=169.04  Aligned_cols=208  Identities=18%  Similarity=0.226  Sum_probs=162.4

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      |..+++|+.+++++|.+.++.++|||+|+.+ +.++ +++||+|++++.+|.++..+    ....|..+++++.+     
T Consensus        31 ~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~a----i~~~g~~pv~~d~~~~~~~  106 (376)
T d1mdoa_          31 PKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM----IVLLGANPVMVDVDRDTLM  106 (376)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTTCC
T ss_pred             HHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccc----hhccccceeeecccccccC
Confidence            7889999999999999999999999999874 5555 78999999999999988644    45778888888753     


Q ss_pred             -CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC---CCCccEEEeccccccc
Q 016612          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIA  203 (386)
Q Consensus       128 -d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~---~~~~di~~~S~sK~~~  203 (386)
                       |+++++++++++|++|+++|   ..|...|+++|.++|+++|++||+|++++.|......   ..+..++.+..+|.+.
T Consensus       107 ~d~~~l~~~i~~~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~  183 (376)
T d1mdoa_         107 VTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNIT  183 (376)
T ss_dssp             BCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSC
T ss_pred             CCHHHHHHhcCCCCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCCCC
Confidence             89999999999999999654   5798899999999999999999999999987643221   2233333344569886


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHhhhhc------------------------CCCCChhhHHHHHhcCCcHHHHHHHHHH
Q 016612          204 GHSDVMAGVLAVKGERLAKELYFLQNAE------------------------GSGLAPFDCWICLRGVKTMALRVEKQQD  259 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (386)
                      .+.   +|+++++++.+.+.++.+...+                        ...++..+++.....+..+....++..+
T Consensus       184 ~g~---GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~  260 (376)
T d1mdoa_         184 CAE---GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAA  260 (376)
T ss_dssp             SSS---CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCC---CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHHhh
Confidence            543   6999999888877766554321                        1234556666666777777777778888


Q ss_pred             HHHHHHHHHhhCC
Q 016612          260 NAQKIAEFLASHP  272 (386)
Q Consensus       260 ~~~~l~~~l~~~~  272 (386)
                      +++.+.+.+.+..
T Consensus       261 ~~~~~~~~L~~~~  273 (376)
T d1mdoa_         261 IAAQYHQAMADLP  273 (376)
T ss_dssp             HHHHHHHHHHTSS
T ss_pred             hhhhhhhhccccc
Confidence            8888888888764

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.85  E-value=8.3e-20  Score=166.87  Aligned_cols=162  Identities=15%  Similarity=0.122  Sum_probs=119.6

Q ss_pred             chHHHHHHHHHhhcCCC-c---eEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--
Q 016612           55 PTRDALESLLAKLDKAD-R---ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~---~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--  127 (386)
                      ...+++++.+++++|.+ +   .++++|||+++++ +..+..+++.+++....+.....................+..  
T Consensus        33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (361)
T d1m32a_          33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR  112 (361)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccCC
Confidence            47889999999999986 2   3344677899975 555777777777665554333222111122222223222222  


Q ss_pred             ---CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 ---d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                         +.+......+++++++.+++.+|.||...|+++|.++|+++|+++++|.+++.|..+ +..+.++|++++|.+||++
T Consensus       113 ~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~  192 (361)
T d1m32a_         113 PDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQ  192 (361)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred             ccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeeccccc
Confidence               233444556689999999999999999999999999999999999999999998865 5667799999999999999


Q ss_pred             cCCCceEEEEEEcCh
Q 016612          204 GHSDVMAGVLAVKGE  218 (386)
Q Consensus       204 g~~g~~~G~i~~~~~  218 (386)
                      ||+|  .|+++.+++
T Consensus       193 gp~G--~g~l~~~~~  205 (361)
T d1m32a_         193 GVPG--FAFVIAREQ  205 (361)
T ss_dssp             CCSS--EEEEEEEHH
T ss_pred             CCCC--ceEEEechh
Confidence            9999  799988754

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.84  E-value=9.9e-21  Score=175.80  Aligned_cols=199  Identities=16%  Similarity=0.140  Sum_probs=139.6

Q ss_pred             CCCCCCCCcccceeeeeee-ecCCCCCCCCcc-ccCCC-CchHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHHHH----
Q 016612           18 NEFDPYGALSTPLYQTATF-KQPSATENGPYD-YTRSG-NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH----   88 (386)
Q Consensus        18 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~-y~~~g-~~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~~~----   88 (386)
                      +++..+|..+.++.++... ...... +.... ..... ....+++++.+++++|++  +.+++.++|++++.++.    
T Consensus        31 Ld~as~g~~p~~v~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~  109 (404)
T d1qz9a_          31 LDGNSLGARPVAALARAQAVIAEEWG-NGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALR  109 (404)
T ss_dssp             CCTTTSCCCBTTHHHHHHHHHHTCCC-CCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHH
T ss_pred             cCCcccccCCHHHHHHHHHHHHHHhc-ccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhh
Confidence            3466788888887764221 111111 11111 11111 236788999999999987  56666777788764322    


Q ss_pred             ---hcCCCCEEEecCCCCCcHHHHHhh-hcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHH
Q 016612           89 ---LLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (386)
Q Consensus        89 ---~~~~g~~Vlv~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l  164 (386)
                         ...+|+.|++.+..|++....+.. ..+.....+......++++++++++++|++|.+++++|.||.+.|+++|+++
T Consensus       110 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~  189 (404)
T d1qz9a_         110 VQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTAL  189 (404)
T ss_dssp             HHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHH
T ss_pred             hhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHHhcCCCceEEEEecccccccceecHHHHhcc
Confidence               246889999888887776544322 2222222222233348889999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccccCCCceEEEEEEcCh
Q 016612          165 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       165 a~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      |+++|+.+++|.+++.|..+ +....+.|++++|.+||+.+++|. +|+++.++.
T Consensus       190 ~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~-~g~~~~~~~  243 (404)
T d1qz9a_         190 SHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS-QAFVWVSPQ  243 (404)
T ss_dssp             HHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC-CCEEEECTT
T ss_pred             ccccccceeEEeeccccccccccccccceEEEEechhhcccCCce-EEEEEechh
Confidence            99999999999999998865 333568999999999998765552 678877654

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.81  E-value=6.4e-18  Score=154.95  Aligned_cols=207  Identities=14%  Similarity=0.098  Sum_probs=162.6

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHH-HHHh-cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~-~~~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      |..+.+|+.+++++|.+.++.++|||+|+.+ +.++ +++||+|++|..+|.++.    ..+...|..+++++.+     
T Consensus        21 ~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~----~~~~~~g~~pv~~Di~~~~~~   96 (374)
T d1o69a_          21 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV----APICYLKAKPVFIDCDETYNI   96 (374)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT----HHHHHTTCEEEEECBCTTSSB
T ss_pred             HHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhH----HHHhhccceeEeccccccccc
Confidence            6789999999999999999999999999874 5554 789999999999998885    4455789999999865     


Q ss_pred             ---CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC--CCCccEEEeccc--c
Q 016612          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSAT--K  200 (386)
Q Consensus       128 ---d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~--~~~~di~~~S~s--K  200 (386)
                         +.+++....++++++|++.+.   .|...++++|.++|+++|++||+|.+++.|......  ..-.|+.++||+  |
T Consensus        97 ~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~K  173 (374)
T d1o69a_          97 DVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNK  173 (374)
T ss_dssp             CHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred             ccccccccchhccccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccCcc
Confidence               122344556688999996554   688899999999999999999999999987644222  223588888876  8


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHhhhhc--------------CCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 016612          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAE--------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  266 (386)
Q Consensus       201 ~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  266 (386)
                      .+....   +|+++++++++.+....+....              ...++..+++.....+..+....++..++++....
T Consensus       174 ~l~tge---GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~  250 (374)
T d1o69a_         174 IITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKE  250 (374)
T ss_dssp             SSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccc---ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHHh
Confidence            885433   6999999888887776554322              12467788888888888888888888888888888


Q ss_pred             HHhhC
Q 016612          267 FLASH  271 (386)
Q Consensus       267 ~l~~~  271 (386)
                      .+.+.
T Consensus       251 ~L~~~  255 (374)
T d1o69a_         251 FLGEY  255 (374)
T ss_dssp             HHTTT
T ss_pred             hcccc
Confidence            88764

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.81  E-value=5.9e-19  Score=165.23  Aligned_cols=291  Identities=13%  Similarity=0.081  Sum_probs=175.2

Q ss_pred             HHHHHHhhcCCC-ceEEeCcHH-HHHH-HHHHh--cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC--------
Q 016612           60 LESLLAKLDKAD-RALCFTSGM-AALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------  126 (386)
Q Consensus        60 l~~~l~~~~g~~-~~i~~~~gt-~al~-~~~~~--~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------  126 (386)
                      +..++.+++|.+ ....+.+|+ +++. ++++.  ..+++.|++++..|+++.    +.+...|...+.++.        
T Consensus       118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~----k~~~~~g~~~~~v~~~~~~~~~~  193 (434)
T d2z67a1         118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI----KAVSFVGMNMRLVETVLDGDRVY  193 (434)
T ss_dssp             HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEETTEEE
T ss_pred             HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHH----HHHHHhCCcceEEEeecCCCccC
Confidence            345567778877 455555555 5554 34443  347899999999998876    445567888777763        


Q ss_pred             CCHHHHHhhhC-----CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCc------cCCCCCCccEEE
Q 016612          127 CDLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL------SRPLELGADIVM  195 (386)
Q Consensus       127 ~d~~~l~~~~~-----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~------~~~~~~~~di~~  195 (386)
                      .|+++|+++++     .++.+|++++|++++|.+.|+++|+++|+++|+++++|++++.+..      ..+...++|+++
T Consensus       194 ~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~  273 (434)
T d2z67a1         194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVV  273 (434)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEE
T ss_pred             CCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEE
Confidence            38999999986     3678899999999999999999999999999999999999975432      123456899999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHH--hcCCcHHHHHHHHHHHHHHHHHHHhhCCC
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPR  273 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  273 (386)
                      +|+||++++|.|  +|++..+++.+.+..................++.+  .+...+....++..++++.+.+.+++...
T Consensus       274 ~s~hK~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~  351 (434)
T d2z67a1         274 SSSDKNLLTPIG--GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSK  351 (434)
T ss_dssp             EEHHHHHCCCSS--CEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCccccccCCC--ccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhh
Confidence            999999988877  67787777766655443322222222222222222  22223334445555566666666654320


Q ss_pred             cceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHh
Q 016612          274 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  353 (386)
Q Consensus       274 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~  353 (386)
                         .  .+++-..         ......+.+.++.  ...++...+...|+....+...  . .+.......        
T Consensus       352 ---~--~g~~ll~---------~~~~~~~~~~~~~--~~~~l~~~L~~~gI~g~~v~~~--l-~~~g~~~~~--------  404 (434)
T d2z67a1         352 ---K--TGGKFLD---------VESPIASCISVNS--DPVEIAAKLYNLRVTGPRGIKK--T-DHFGNCYLG--------  404 (434)
T ss_dssp             ---H--SSCCBCC---------CCCSSEEEEECSS--CHHHHHHHHHHTTEESCEEECT--T-CHHHHTCSS--------
T ss_pred             ---h--cCceecC---------CCCCceeeeecCC--CHHHHHHHHHHcCCeeeehhhh--c-cccCeeeec--------
Confidence               0  0111000         0011223333321  1334444444445532111000  0 000111100        


Q ss_pred             cCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          354 RGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       354 ~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                       -...+++|++++..++++.|+.+-++|++.
T Consensus       405 -~~~~~~l~~~~s~~~T~edID~~i~~L~kI  434 (434)
T d2z67a1         405 -TYTHDYIVMNAAIGVRTEDIVNSVSKLEKI  434 (434)
T ss_dssp             -CCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             -ccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence             113578999999888888888888888763

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=5.9e-18  Score=155.63  Aligned_cols=161  Identities=11%  Similarity=0.089  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHhhcCC----C-c-eEEeCcHHHHHHHH-HHhc---CCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           56 TRDALESLLAKLDKA----D-R-ALCFTSGMAALAAV-THLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~----~-~-~i~~~~gt~al~~~-~~~~---~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      ..+++.+.+.++++.    + + .+++++||++++++ ..++   ++||+|++....+++...  ...++..+.....+.
T Consensus        37 ~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~--~~~~~~~~~~~~~~~  114 (382)
T d2bkwa1          37 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF--ADCLRSYGAQVDVVR  114 (382)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH--HHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhh--hhhcccccccccccc
Confidence            456666777777653    3 3 45567778999855 4454   689999998877765532  344556666665554


Q ss_pred             C------CCHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCcc-CCCCCCccEEE
Q 016612          126 T------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVM  195 (386)
Q Consensus       126 ~------~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~-~~~~~~~di~~  195 (386)
                      .      .+.+++++.+. ++++++++++.+|.||...|++.+.+.|+++  ++++++|.+++.|..+ +...+++|+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~  194 (382)
T d2bkwa1         115 PLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFAL  194 (382)
T ss_dssp             CSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEE
T ss_pred             ccCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEe
Confidence            2      25677776654 6889999999999999999999999999877  5999999999998875 55667999999


Q ss_pred             eccccccccCCCceEEEEEEcChhH
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGERL  220 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~~~  220 (386)
                      +|.+|+++||+|  .|+++.+++.+
T Consensus       195 ~s~~K~l~gP~G--~g~l~vs~~~~  217 (382)
T d2bkwa1         195 TASQKAIGAPAG--LSISLCSSRFM  217 (382)
T ss_dssp             EESSSTTCCCSC--EEEEEECHHHH
T ss_pred             ecccccCcCCCc--hhhhhccHHHH
Confidence            999999999999  79999986543

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.81  E-value=3.1e-18  Score=156.85  Aligned_cols=302  Identities=14%  Similarity=0.132  Sum_probs=206.1

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh--cCCC--CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHL--LGTG--EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~--~~~g--~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      |..+++|+.+++++|.+.++.++|||+|+.+++..  +.+|  |+|+++..+|.++.    ......|.++++++.+   
T Consensus        31 ~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~----~ai~~~G~~pv~vDi~~~~  106 (371)
T d2fnua1          31 KRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATA----NMLLESGYTPVFAGIKNDG  106 (371)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHH----HHHHHTTCEEEECCBCTTS
T ss_pred             HHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccc----eeeeccCcccccccccccc
Confidence            68999999999999999999999999998865554  3344  48999999998886    4445799999999965   


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCC--CCCccEEEecc--ccc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSA--TKF  201 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~--~~~~di~~~S~--sK~  201 (386)
                        +.+++++.+++++++|++.+   ..|...++++|.++|+++|+++|+|.+++.|......  ....|+.++||  .|.
T Consensus       107 ~~~~~~~~~~~~~~t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~  183 (371)
T d2fnua1         107 NIDELALEKLINERTKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKP  183 (371)
T ss_dssp             SBCGGGSGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             cccchhhhhhccchhhcccccc---ccccccccccccccccccchhhccchhhccCceeccccCCccccccccccccccc
Confidence              56778888889999999665   4688899999999999999999999999988754332  22346667775  788


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHhhhhc----------------CCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 016612          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAE----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIA  265 (386)
Q Consensus       202 ~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  265 (386)
                      +....   +|+++++++++.+.++......                ...++..+++.....++.+....++..+++....
T Consensus       184 l~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~  260 (371)
T d2fnua1         184 ITTAE---GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYD  260 (371)
T ss_dssp             SCCSS---CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ccccc---ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhhhc
Confidence            86533   6999999988888776654322                2346778888888888888888888888888888


Q ss_pred             HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC--HHhHHHHHhhcCcceeccCCCCccccccccccc--
Q 016612          266 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFM--  341 (386)
Q Consensus       266 ~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~--  341 (386)
                      +.+.+.+.+. ...+....           ......+.+.+.+  ....+.+.+.|...||.++... ..+...|.+.  
T Consensus       261 ~~l~~~~~~~-~~~~~~~~-----------~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y-~pl~~~~~~~~~  327 (371)
T d2fnua1         261 RIFKDNPYFT-PLHPLLKD-----------KSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHY-KPIYQYQLYQQL  327 (371)
T ss_dssp             HHHTTCSSEE-ESGGGCSS-----------CCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCC-CCGGGSHHHHHH
T ss_pred             cccccccccc-cccccccc-----------ccccccccccccccchhHHHHHHHHHHHCCCCcceeC-cccccCHHHHhc
Confidence            8887665321 11000000           1122334444543  2335678888888898766532 1223333221  


Q ss_pred             -cCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 016612          342 -SHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  383 (386)
Q Consensus       342 -~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  383 (386)
                       ....++.....    ....+.+-+.    .++++.+++.+.+.+++
T Consensus       328 ~~~~~~pnae~~----~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         328 FNTAPLKSAEDF----YHAEISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             HCCCCCHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHH----HhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence             11222222111    1233555443    26666777777777664

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.81  E-value=2.6e-19  Score=165.14  Aligned_cols=162  Identities=17%  Similarity=0.257  Sum_probs=125.9

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEeC-cHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD--RALCFT-SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~-~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      .+.+++++.+++++|.+  ..++++ |||.++++ +..++.+|+++++....+.+....  ..++..+...+.+...   
T Consensus        50 ~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~  127 (388)
T d2ch1a1          50 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAV--EMSERYGADVRTIEGPPDR  127 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHH--HHHHHTTCEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccch--hhhhhhccccccccccccc
Confidence            46889999999999986  456554 56799875 556889999999887777655432  3445556555555432   


Q ss_pred             --CHHHHHhhh-CCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 --DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 --d~~~l~~~~-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                        +.++.+... +.+++++++++.+|.+|...|+++|.++|+++|.++++|.+++.+..+ +..+++.|++++|.+|+++
T Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~  207 (388)
T d2ch1a1         128 PFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLG  207 (388)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCC
T ss_pred             ccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccccC
Confidence              455555444 368999999999999999999999999999999999999999988754 5667899999999999999


Q ss_pred             cCCCceEEEEEEcChhH
Q 016612          204 GHSDVMAGVLAVKGERL  220 (386)
Q Consensus       204 g~~g~~~G~i~~~~~~~  220 (386)
                      ||+|  +|+++.+++.+
T Consensus       208 gp~G--~g~~~~~~~~~  222 (388)
T d2ch1a1         208 APPG--ITPISISPKAL  222 (388)
T ss_dssp             CCSS--CEEEEECHHHH
T ss_pred             CCCe--EEEEeccHHHH
Confidence            9998  68888875543

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.81  E-value=1.8e-18  Score=158.77  Aligned_cols=160  Identities=16%  Similarity=0.234  Sum_probs=122.4

Q ss_pred             chHHHHHHHHHhhcCCC--ceEEe-CcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           55 PTRDALESLLAKLDKAD--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~-~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      ...+++++.+++++|.+  ..+++ ++||.+++ ++..++.+|+++++....|.+....  ..+...+.....+...   
T Consensus        51 ~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  128 (377)
T d1vjoa_          51 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLV--DMAGRYGADVRTISKPWGE  128 (377)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHH--HHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhh--hhhhhhcccccccccCCCC
Confidence            36889999999999975  35555 45678887 5566899999999888777654332  3444455444444321   


Q ss_pred             --CHHHHH-hhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccc
Q 016612          128 --DLDEVA-SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (386)
Q Consensus       128 --d~~~l~-~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~  203 (386)
                        +.+..+ ...+++++++.+++.+|.||.+.|+++|.++|+++|.++++|.+++.|... +...++.|++++|.+|+++
T Consensus       129 ~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~  208 (377)
T d1vjoa_         129 VFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLG  208 (377)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTC
T ss_pred             cccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeeccccccc
Confidence              344444 334468899999999999999999999999999999999999999988764 5566799999999999999


Q ss_pred             cCCCceEEEEEEcCh
Q 016612          204 GHSDVMAGVLAVKGE  218 (386)
Q Consensus       204 g~~g~~~G~i~~~~~  218 (386)
                      ||+|  +|+++.++.
T Consensus       209 gp~g--~~~~~~~~~  221 (377)
T d1vjoa_         209 CSPG--ASPFTMSSR  221 (377)
T ss_dssp             SCSS--CEEEEECHH
T ss_pred             CCCE--EEEecchhh
Confidence            9887  677777644

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=5.2e-19  Score=159.96  Aligned_cols=286  Identities=14%  Similarity=0.088  Sum_probs=183.6

Q ss_pred             chHHHHHHHHHhhcCCC-c-eEEeCcHHHHHHH-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC--CH
Q 016612           55 PTRDALESLLAKLDKAD-R-ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--DL  129 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~-~i~~~~gt~al~~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--d~  129 (386)
                      .+.+++++.++++++.+ + .++++|||.++.+ +..++++||+|++...++.+..  +...++..+.++...+..  +.
T Consensus        33 ~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~--~~~~a~~~~~~~~~~~~~~g~~  110 (348)
T d1iuga_          33 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT  110 (348)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHH--HHHHHHhcCcccccccccCCCc
Confidence            36788899999999887 3 4456677899974 5668999999998777655442  346777888877776643  22


Q ss_pred             HHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHc--CCEEEEeCCCCCCCcc-CCCCCCccEEEeccccccccCC
Q 016612          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHS  206 (386)
Q Consensus       130 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~--~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g~~  206 (386)
                      ...++...++++.++++|..+.+|.+.|+++|.++|+++  +.++++|.+++.+..+ +...++.|++++|.+|++.||+
T Consensus       111 ~~~~~~~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gpp  190 (348)
T d1iuga_         111 PRPEDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPP  190 (348)
T ss_dssp             CCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCS
T ss_pred             cccccccccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCC
Confidence            223334457889999999999999999999999999987  4789999999887754 4556789999999999999999


Q ss_pred             CceEEEEEEcChhHHH------------HHHHhhhhcCCCCChh-hHHHHHhcCCc----HHHHHHHHHHHHHHHHHHHh
Q 016612          207 DVMAGVLAVKGERLAK------------ELYFLQNAEGSGLAPF-DCWICLRGVKT----MALRVEKQQDNAQKIAEFLA  269 (386)
Q Consensus       207 g~~~G~i~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~  269 (386)
                      |  .|+++.+++.+.+            .............++. ..+.+..+++.    ...+..........+....+
T Consensus       191 G--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (348)
T d1iuga_         191 G--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGE  268 (348)
T ss_dssp             C--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--eeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Confidence            9  6999988653321            0111111111222222 22222223322    11111111111222222222


Q ss_pred             hCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHH
Q 016612          270 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  349 (386)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~  349 (386)
                      ...         +...+.      . . ...++++.+++......+.+.+..+|+.+..|..                  
T Consensus       269 ~~g---------l~~~~~------~-~-s~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~------------------  313 (348)
T d1iuga_         269 EGG---------LRPVPK------R-F-SPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQG------------------  313 (348)
T ss_dssp             HTT---------CEESCS------S-B-CTTCEEEECCTTCCHHHHHHHHHTTTEECEECCG------------------
T ss_pred             hhh---------hccChh------h-c-CCeEEEEECCCCCCHHHHHHHHHHCCeEEEcCcc------------------
Confidence            221         111110      0 1 1346788886654567788888888888766643                  


Q ss_pred             HHHhcCCCCCeEEEEe-c---cCChHHHHHHHHHHHhcC
Q 016612          350 VRQARGLTEDLVRISV-G---IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       350 ~~~~~~~~~~~iRis~-~---~~~~~~~i~~l~~~l~~~  384 (386)
                           .+....+||+. |   .++++.+++.|+++|++.
T Consensus       314 -----~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         314 -----PLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             -----GGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                 11345699984 3   578888899999998763

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.80  E-value=3.2e-18  Score=161.40  Aligned_cols=161  Identities=16%  Similarity=0.057  Sum_probs=117.8

Q ss_pred             chHHHHHHHHHhhcCCCceEEeCcHHH-HHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC-----
Q 016612           55 PTRDALESLLAKLDKADRALCFTSGMA-ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~gt~-al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----  127 (386)
                      ....++++.+++++|++..+++++||. ++. ++.++++|||+|++++.+|.+....+. .+...+..+..++.+     
T Consensus        66 ~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~-~l~~~~~~~~~~~~~~~g~~  144 (462)
T d1c4ka2          66 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-AMAGGRPVYLQTNRNPYGFI  144 (462)
T ss_dssp             THHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-TTTCCEEEEECEEECTTCCE
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHH-HHhcCCceeeeccccccccc
Confidence            368889999999999999999999984 444 467789999999999999988865432 233334444433221     


Q ss_pred             --------CHH---------HHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCC----
Q 016612          128 --------DLD---------EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP----  186 (386)
Q Consensus       128 --------d~~---------~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~----  186 (386)
                              +.+         +++++...++.++++.+.+|..|.+.|+++|.++|+++|+++++|++++.+....+    
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~  224 (462)
T d1c4ka2         145 GGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRN  224 (462)
T ss_dssp             EEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGG
T ss_pred             CCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCc
Confidence                    122         23344456677777777778899999999999999999999999999986543211    


Q ss_pred             ----------CCCCccEEEeccccccccCCCceEEEEEEcCh
Q 016612          187 ----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       187 ----------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                                ...++|++++|+||+++++.+  ++++..++.
T Consensus       225 ~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~--g~ll~~~~~  264 (462)
T d1c4ka2         225 SSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ--TSQIHKKDS  264 (462)
T ss_dssp             GCTTSCCCCCTTSCEEEEEECHHHHSSCCTT--CEEEEEECG
T ss_pred             chhhccccccccCCccEEEEecCcccccccc--eEEEEeccc
Confidence                      122459999999999976654  566665543

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.3e-18  Score=161.74  Aligned_cols=207  Identities=11%  Similarity=0.037  Sum_probs=140.4

Q ss_pred             HHHHHHHHhhcCCC---ceEEeCcHHH-HHHH-HHH---hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC---
Q 016612           58 DALESLLAKLDKAD---RALCFTSGMA-ALAA-VTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---  126 (386)
Q Consensus        58 ~~l~~~l~~~~g~~---~~i~~~~gt~-al~~-~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---  126 (386)
                      .++.+++++++|.+   ..+++++|++ ++.+ +.+   ...+++.|+++...|.++.    ..+...|.+.+.++.   
T Consensus        97 ~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~----~a~~~~g~~~~~v~~~~~  172 (445)
T d3bc8a1          97 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMVTAGFEPVVIENVLE  172 (445)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEE
T ss_pred             HHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHH----HHHHHcCCeeEEEEeecc
Confidence            34556777888865   4677777774 4443 332   2457789999999998886    445577888877763   


Q ss_pred             -----CCHHHHHhhhC----CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc--C----CCC-CC
Q 016612          127 -----CDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--R----PLE-LG  190 (386)
Q Consensus       127 -----~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~--~----~~~-~~  190 (386)
                           .|+++|+++++    +++.+|++++|+|++|.+.|+++|+++|+++|+++++|++++.+...  .    ... .+
T Consensus       173 ~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  252 (445)
T d3bc8a1         173 GDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGR  252 (445)
T ss_dssp             TTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSC
T ss_pred             CcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCC
Confidence                 28999998885    47889999999999999999999999999999999999999865422  0    111 25


Q ss_pred             ccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhc--CCcHHHHHHHHHHHHHHHHHHH
Q 016612          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       191 ~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l  268 (386)
                      +|++++|+||++++|.|  +|+++.++..+.+.+.......+........++.+..  ...+....+...++++.+.+.+
T Consensus       253 vd~~~~s~hK~~~~p~g--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L  330 (445)
T d3bc8a1         253 IDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQL  330 (445)
T ss_dssp             CCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEecCccccccCCC--CceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence            89999999999988877  7888888776666554433333223222333332221  1222333334444555555554


Q ss_pred             hh
Q 016612          269 AS  270 (386)
Q Consensus       269 ~~  270 (386)
                      .+
T Consensus       331 ~~  332 (445)
T d3bc8a1         331 KK  332 (445)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.4e-17  Score=155.33  Aligned_cols=289  Identities=11%  Similarity=-0.036  Sum_probs=184.8

Q ss_pred             hHHHHHHHHHhhcCCC-------ceEEeCcHHHHHH-HHHHhc------------CCCCEEEecCCCCCcHHHHHhhhcc
Q 016612           56 TRDALESLLAKLDKAD-------RALCFTSGMAALA-AVTHLL------------GTGEEIVAGDDLYGGTDRLLSRVTP  115 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~-------~~i~~~~gt~al~-~~~~~~------------~~g~~Vlv~~~~~~~~~~~~~~~~~  115 (386)
                      +-.++.+++++++|.+       ..+++++||+|+. ++++..            .....++++...|.++    .+.++
T Consensus        94 lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~----~Kaa~  169 (450)
T d1pmma_          94 IDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW----HKFAR  169 (450)
T ss_dssp             HHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHH----HHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHH----HHHHH
Confidence            3455667888988863       2588899998754 443321            1223467777777666    47778


Q ss_pred             cCCcEEEEeCCC------CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHH------HHcCCEEEEeCCCCCCCc
Q 016612          116 KTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA------HAHGALLLVDNSIMSPVL  183 (386)
Q Consensus       116 ~~g~~~~~v~~~------d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la------~~~~~~li~D~a~~~~~~  183 (386)
                      ..|++++.++.+      |++++++.++++|.+|+.+.+++.||.+.|+++|.++|      +++|+++++|++++.+..
T Consensus       170 ~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~  249 (450)
T d1pmma_         170 YWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLA  249 (450)
T ss_dssp             HTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH
T ss_pred             HcCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhcccee
Confidence            899999988753      89999999999999999999999999999998888775      557999999999876543


Q ss_pred             c--CC------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh-----hh----hc--CCCC--ChhhHHH
Q 016612          184 S--RP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----QN----AE--GSGL--APFDCWI  242 (386)
Q Consensus       184 ~--~~------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-----~~----~~--~~~~--~~~~~~~  242 (386)
                      +  .+      .-.++|.+..|+|||+.+|.|  +|+++.+++.........     ..    ..  ++..  .....|+
T Consensus       250 p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~  327 (450)
T d1pmma_         250 PFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYY  327 (450)
T ss_dssp             HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHH
T ss_pred             eeechhhhhhhcccceeEeecChhhccCCCCC--eeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHH
Confidence            1  11      113689999999999988888  799998876542211100     00    00  0111  1112232


Q ss_pred             HH--hcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC----HHhHHHHH
Q 016612          243 CL--RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----LALSKHVV  316 (386)
Q Consensus       243 ~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~l~  316 (386)
                      .+  .+...+....++..++++.+.+.+++.+.+. ++.++            .+....++++|.+.+    .-....+.
T Consensus       328 ~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~e-l~~~~------------~p~~~l~~V~Fr~~~~~~~~~~~~~l~  394 (450)
T d1pmma_         328 EFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYE-FICTG------------RPDEGIPAVCFKLKDGEDPGYTLYDLS  394 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEE-EEEEC------------CTTTBSSEEEEEECTTCCCSSCHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEeCC------------CCCCceEEEEEecCCcccCCCCHHHHH
Confidence            22  2334456666677778888888888776432 22111            112234678998732    12344666


Q ss_pred             hhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          317 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       317 ~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                      ++|...|+.+..      +..|..              ......+|+.+..    +.++++++.|+++++.
T Consensus       395 ~~L~~~Gw~v~~------~~~p~~--------------~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~  445 (450)
T d1pmma_         395 ERLRLRGWQVPA------FTLGGE--------------ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY  445 (450)
T ss_dssp             HHHHTTTCBCCE------EECCTT--------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCeeec------cCcCCC--------------cCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence            777777764321      111111              1123569999853    5677778888877764

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=1.7e-17  Score=149.36  Aligned_cols=283  Identities=18%  Similarity=0.169  Sum_probs=167.0

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC----C
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----C  127 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~  127 (386)
                      +.|...++|+.+++++|.+++++++|||+|+. ++.++.++||.+++..+.|.++.... ......+..+..++.    .
T Consensus        32 ~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  110 (343)
T d1m6sa_          32 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAM  110 (343)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEE
T ss_pred             CCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceeccccccceeeecc-cccccccceeeccccccCcc
Confidence            34788999999999999999999999998865 67778899999999988775543211 122233445544443    2


Q ss_pred             CHHHHHhhhCC------CceEEEEe-CCCCCCccccc---HHHHHHHHHHcCCEEEEeCCCCCCCccCC------CCCCc
Q 016612          128 DLDEVASAIGP------WTKLVWVE-SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP------LELGA  191 (386)
Q Consensus       128 d~~~l~~~~~~------~~~~v~~~-~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~~------~~~~~  191 (386)
                      |++.+++.+..      ++..++++ .++|+.|.+.|   +++|.++|+++|+++++|+++..+.....      .....
T Consensus       111 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~  190 (343)
T d1m6sa_         111 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA  190 (343)
T ss_dssp             CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC
T ss_pred             CHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcccc
Confidence            88888888763      34455554 66777777664   67888888999999999999864322100      01133


Q ss_pred             cEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHH-HhcCCcHHHHHHHHHHHHHHHHHHHhh
Q 016612          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC-LRGVKTMALRVEKQQDNAQKIAEFLAS  270 (386)
Q Consensus       192 di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~  270 (386)
                      +..+.+.+|..++.   ++|++....+.+.....................+. .........+.....++...+...+.+
T Consensus       191 ~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (343)
T d1m6sa_         191 DSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKE  267 (343)
T ss_dssp             SEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccc---ccccccccHHHHhhhHhhCcccccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Confidence            45555566655443   35777766443333222222222222222211111 111110011122333444444444443


Q ss_pred             CCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCC-HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHH
Q 016612          271 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  349 (386)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~  349 (386)
                      ....   ..              .....++++++.+++ .....++.+.|..+|+.+++.                    
T Consensus       268 ~~~~---~~--------------~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~~--------------------  310 (343)
T d1m6sa_         268 IGYS---VN--------------PEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV--------------------  310 (343)
T ss_dssp             HTCB---CC--------------GGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE--------------------
T ss_pred             hccC---cc--------------CCCCCceEEEEEeCCCcccHHHHHHHHHHCCCEEecC--------------------
Confidence            3210   00              001245678887754 234677888888888865431                    


Q ss_pred             HHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          350 VRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       350 ~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                             .++++|++++.    +++|++++.|++++++
T Consensus       311 -------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~  341 (343)
T d1m6sa_         311 -------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRK  341 (343)
T ss_dssp             -------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                   24569999864    7778888888887765

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.72  E-value=3.7e-16  Score=139.36  Aligned_cols=284  Identities=20%  Similarity=0.193  Sum_probs=181.9

Q ss_pred             CCchHHHHH----HHHHhhcCCC-ceEEeCcHHHHH-HHHHHhcCCCCEEEecCCCCCcHHHHHh-hhcccCCcEEEEeC
Q 016612           53 GNPTRDALE----SLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVN  125 (386)
Q Consensus        53 g~~~~~~l~----~~l~~~~g~~-~~i~~~~gt~al-~~~~~~~~~g~~Vlv~~~~~~~~~~~~~-~~~~~~g~~~~~v~  125 (386)
                      |.....++|    ++++++|+.+ ..+-..||+.|. .+..++++|||+|+..++.++++..+-. ........+++.++
T Consensus        63 G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~  142 (405)
T d1kl1a_          63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYG  142 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEEC
T ss_pred             CchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEec
Confidence            555555554    5567889998 456677899775 5778899999999988876665532100 00111123455444


Q ss_pred             C------CCHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC-----CCCccCCCCCCccE
Q 016612          126 T------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADI  193 (386)
Q Consensus       126 ~------~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-----~~~~~~~~~~~~di  193 (386)
                      .      .|.+++++.+. .++++|++-...+|  ...|++++.++|++.|.+++.|.+|.     .+.+++|+. .+|+
T Consensus       143 ~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~-~aDv  219 (405)
T d1kl1a_         143 VDPETHVIDYDDVREKARLHRPKLIVAAASAYP--RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP-YAHF  219 (405)
T ss_dssp             BCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSE
T ss_pred             cchhcccccHHHHHHHHHhhCcceEEecccccc--cccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhh-hhhh
Confidence            3      28899998876 68999998766654  56799999999999999999999986     456778885 6899


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHH-----Hhc-CCcHHHHHHHHHHHHHHHHHH
Q 016612          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC-----LRG-VKTMALRVEKQQDNAQKIAEF  267 (386)
Q Consensus       194 ~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~l~~~  267 (386)
                      +++|.||+|.||.   +|++.++ +++.+++.........+.......+.     ... -..+.....+..+|++.|.+.
T Consensus       220 vt~tThKtlrGPr---gg~I~~~-~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~  295 (405)
T d1kl1a_         220 VTTTTHKTLRGPR---GGMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASA  295 (405)
T ss_dssp             EEEESSSTTCCCS---CEEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccccccCCC---CceEEec-chhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            9999999998875   6999987 45655554443322222222111111     122 224566778888999999999


Q ss_pred             HhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC----CHHhHHHHHhhcCcceeccC----CCCccccccccc
Q 016612          268 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----SLALSKHVVETTKYFSITVS----FGSVKSLISMPC  339 (386)
Q Consensus       268 l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~gi~~~----~G~~~~~~~~p~  339 (386)
                      |.+..-  . ...+-              -...++++.+.    +...+++.+++.   ||.++    |+...+      
T Consensus       296 L~~~G~--~-vv~gg--------------Td~H~vlvdl~~~~~~g~~ae~~Le~a---gI~~Nkn~iP~d~~~------  349 (405)
T d1kl1a_         296 LQNEGF--T-LVSGG--------------TDNHLLLVDLRPQQLTGKTAEKVLDEV---GITVNKNTIPYDPES------  349 (405)
T ss_dssp             HHHTTC--E-EGGGS--------------CSSSEEEEECGGGTCCHHHHHHHHHHH---TEECEECCCTTCSSC------
T ss_pred             HhcCCc--e-eecCC--------------CccceeeccccccCCcHHHHHHHHHHc---CeEEcCCcCCCCCCC------
Confidence            988641  1 11111              12456777662    233344444444   44433    222111      


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEec--------cCChHHHHHHHHHHHhcC
Q 016612          340 FMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i~~l~~~l~~~  384 (386)
                                     ...++.|||+..        .+++.++.+.+.++|+..
T Consensus       350 ---------------~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~  387 (405)
T d1kl1a_         350 ---------------PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             ---------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             ---------------CCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence                           112456999973        378888888888888643

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.72  E-value=1.4e-15  Score=136.54  Aligned_cols=313  Identities=14%  Similarity=0.060  Sum_probs=171.2

Q ss_pred             eeeccCCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCCceE-EeCcHHHHHH-HHHHh
Q 016612           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRAL-CFTSGMAALA-AVTHL   89 (386)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i-~~~~gt~al~-~~~~~   89 (386)
                      .+++|. +++++| .+|.+.++-  .+  +.......|.  .++..+++++.+++++|.+..+ ++++||+|.. ++...
T Consensus         3 ~~~~f~-s~n~~g-~~P~v~~A~--~~--a~~~~~~~~~--~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~   74 (345)
T d1v72a1           3 PALGFS-SDNIAG-ASPEVAQAL--VK--HSSGQAGPYG--TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM   74 (345)
T ss_dssp             CCCBCS-CGGGCC-CCHHHHHHH--HH--TTSSCCCSTT--CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS
T ss_pred             CCcCcC-CCCCCC-CCHHHHHHH--HH--HhccCccccC--CCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHH
Confidence            467777 555566 477777652  22  1122223332  3468999999999999998655 5688998876 55557


Q ss_pred             cCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-----CCHHHHHhhhCCC------ce-EEEEeCCCCCCcccc-
Q 016612           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPW------TK-LVWVESPTNPRQQIC-  156 (386)
Q Consensus        90 ~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~~~~~------~~-~v~~~~~~nptG~~~-  156 (386)
                      +.+++.+++....|.+....+ ......+..+..++.     .+++++++.+.+.      +. .++...+.|+.+... 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (345)
T d1v72a1          75 TPPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYT  153 (345)
T ss_dssp             CCTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCC
T ss_pred             HhcCCccccccccceeeechh-hHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeecccccccccc
Confidence            788888887777654432211 122233444444443     3888998887632      23 333345556566554 


Q ss_pred             --cHHHHHHHHHHcCCEEEEeCCCCCCCcc----C----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHH
Q 016612          157 --DIRKIAEMAHAHGALLLVDNSIMSPVLS----R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (386)
Q Consensus       157 --~l~~i~~la~~~~~~li~D~a~~~~~~~----~----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~  226 (386)
                        +++++.++|+++|+++++|+++..+...    .    ......+..+.+.+|..  ...  .+...............
T Consensus       154 ~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~  229 (345)
T d1v72a1         154 LDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNG--VLA--AEAIVLFNTSLATEMSY  229 (345)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGT--CSS--CEEEEESSGGGHHHHHH
T ss_pred             chhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccc--ccc--ccccccchhhhhhhccc
Confidence              5788899999999999999998632211    1    11123345555555543  222  33334444433322222


Q ss_pred             hh-hhcCC-CCChhhHHHHHhcCCc--HHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceE
Q 016612          227 LQ-NAEGS-GLAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  302 (386)
Q Consensus       227 ~~-~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  302 (386)
                      .. ...+. ................  ............+.+...+.+.+.              ..+..   +..++++
T Consensus       230 ~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--------------~~~~~---p~~~niv  292 (345)
T d1v72a1         230 RRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGG--------------VEVLG---GTEANIL  292 (345)
T ss_dssp             HHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTT--------------EEEES---CCCSSEE
T ss_pred             cccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCC--------------cEecc---CCCccEE
Confidence            21 22222 2222222222222222  222333333444444444444432              22111   2246778


Q ss_pred             EEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 016612          303 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  382 (386)
Q Consensus       303 ~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  382 (386)
                      .+.+++. ..+.    +...|+.+..+.                         ..++.+||+++..++++.++.+-++|+
T Consensus       293 ~~~~~~~-~~~~----L~~~gi~v~~~~-------------------------~~~~~lR~~~~~~~T~edid~~le~lr  342 (345)
T d1v72a1         293 FCRLDSA-MIDA----LLKAGFGFYHDR-------------------------WGPNVVRFVTSFATTAEDVDHLLNQVR  342 (345)
T ss_dssp             EEEECHH-HHHH----HHHTTCBCBCSS-------------------------SSTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEcCHH-HHHH----HHHcCCCccccC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            8877532 2333    444455433221                         135679999998888888888888887


Q ss_pred             cC
Q 016612          383 TG  384 (386)
Q Consensus       383 ~~  384 (386)
                      ++
T Consensus       343 ~a  344 (345)
T d1v72a1         343 LA  344 (345)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.72  E-value=8e-17  Score=150.49  Aligned_cols=212  Identities=17%  Similarity=0.088  Sum_probs=142.0

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCC-----
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----  126 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----  126 (386)
                      |+|...++++.+++++|.+.++.++||++|.. ++.++++|||+|+.....+ .+..    .....|...+.+..     
T Consensus        73 ~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~-~~~~----~i~~~g~~~~~~~~~~~~~  147 (456)
T d1c7ga_          73 GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFT-TTRF----HQEKNGATFVDIVRDEAHD  147 (456)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSCCH-HHHH----HHHHTTEEEEECBCGGGGC
T ss_pred             CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcchH-HHHH----HHHHcCceeeecccccccc
Confidence            56889999999999999999999999998876 5666899999988765432 3321    12234554443321     


Q ss_pred             ----------CCHHHHHhhhC----CCceEEEEeCCCCCCcccc----cHHHHHHHHHHcCCEEEEeCCCCCCCc-----
Q 016612          127 ----------CDLDEVASAIG----PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMSPVL-----  183 (386)
Q Consensus       127 ----------~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~----~l~~i~~la~~~~~~li~D~a~~~~~~-----  183 (386)
                                .|++++++.++    +++.++++++++|+.|...    ++++|.++|++||+.+++|+++..+..     
T Consensus       148 ~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~  227 (456)
T d1c7ga_         148 ASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKE  227 (456)
T ss_dssp             TTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHH
T ss_pred             ccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcc
Confidence                      28899998886    3556899999999887553    588999999999999999999753210     


Q ss_pred             --cCCC-----------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcC-----CCCChhhHHHHHh
Q 016612          184 --SRPL-----------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-----SGLAPFDCWICLR  245 (386)
Q Consensus       184 --~~~~-----------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  245 (386)
                        ....           ...+|++++|++|.++++.   +|+++++++.+.++.+......+     .+.+.....+...
T Consensus       228 ~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~---GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~  304 (456)
T d1c7ga_         228 QEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI---GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAI  304 (456)
T ss_dssp             HSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS---CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHH
T ss_pred             cccccCCCChhhhccccccccccEEEeccccccccc---eeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHH
Confidence              0000           1247999999999987654   69999988887766654432221     1222222222222


Q ss_pred             cCCcH--HHHHHHHHHHHHHHHHHHhhCC
Q 016612          246 GVKTM--ALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       246 ~~~~~--~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      ++...  ....++..++++.+.+.|.+..
T Consensus       305 ~l~e~~~~~~l~~r~~~~~~L~e~L~~~g  333 (456)
T d1c7ga_         305 GLREAMQYEYIEHRVKQVRYLGDKLREAG  333 (456)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence            11110  2334455667778888887653

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.4e-15  Score=133.78  Aligned_cols=283  Identities=20%  Similarity=0.195  Sum_probs=181.6

Q ss_pred             CCchHHHHH----HHHHhhcCCC-ceEEeCcHHHHH-HHHHHhcCCCCEEEecCCCCCcHHHHHhhhcccCC--cEEEEe
Q 016612           53 GNPTRDALE----SLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRV  124 (386)
Q Consensus        53 g~~~~~~l~----~~l~~~~g~~-~~i~~~~gt~al-~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g--~~~~~v  124 (386)
                      |....+++|    ++..++||.+ ..+-..||+.|. .+++++++|||+|+..+..++++..+- ......|  .+.+.+
T Consensus        66 G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg-~~~~~~g~~~~~~~y  144 (416)
T d1dfoa_          66 GCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-SPVNFSGKLYNIVPY  144 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGT-CTTSHHHHHSEEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhcCCCCeeeecccccccccccc-ccccccCceEEEEec
Confidence            444444444    5567789998 456678999775 577889999999999888877763221 1111111  233333


Q ss_pred             CC-----CCHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCC-----CCccCCCCCCccE
Q 016612          125 NT-----CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----PVLSRPLELGADI  193 (386)
Q Consensus       125 ~~-----~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~-----~~~~~~~~~~~di  193 (386)
                      +.     .|.+++++... .++++|++....+|  ...|++++.++|++.|.++++|.+|..     +.+++|... +|+
T Consensus       145 ~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDv  221 (416)
T d1dfoa_         145 GIDATGHIDYADLEKQAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHV  221 (416)
T ss_dssp             CBCSSSSBCHHHHHHHHHHHCCSEEEEECSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSE
T ss_pred             ccCCccCccHHHHHHHHHHhccceEEecccccc--cccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cce
Confidence            32     38899988765 68999998765553  678999999999999999999999863     456788875 799


Q ss_pred             EEeccccccccCCCceEEEEEEcC--hhHHHHHHHhhhhcCCCCChhhH-----HHHHhcCC-cHHHHHHHHHHHHHHHH
Q 016612          194 VMHSATKFIAGHSDVMAGVLAVKG--ERLAKELYFLQNAEGSGLAPFDC-----WICLRGVK-TMALRVEKQQDNAQKIA  265 (386)
Q Consensus       194 ~~~S~sK~~~g~~g~~~G~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~l~  265 (386)
                      +++|+||+|.||.   +|++.+++  +++.+++.........+......     .++..++. .+.....+..+|++.|.
T Consensus       222 vt~tThKtlrGPr---ggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La  298 (416)
T d1dfoa_         222 VTTTTHKTLAGPR---GGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV  298 (416)
T ss_dssp             EEEESSSTTCCCS---CEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehhhcccCCC---ceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            9999999998875   69999874  45555554333222222111111     11122232 45677888899999999


Q ss_pred             HHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC----CHHhHHHHHhhcCcceeccC----CCCccccccc
Q 016612          266 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----SLALSKHVVETTKYFSITVS----FGSVKSLISM  337 (386)
Q Consensus       266 ~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~gi~~~----~G~~~~~~~~  337 (386)
                      +.|.+..-  . +..+              .-...++.+.+.    +...+++.+++.   ||.++    ++...+    
T Consensus       299 ~~L~~~G~--~-iv~g--------------gTdnHlvlvdl~~~~~~G~~a~~~Le~~---gI~~Nkn~iP~d~~~----  354 (416)
T d1dfoa_         299 EVFLERGY--K-VVSG--------------GTDNHLFLVDLVDKNLTGKEADAALGRA---NITVNKNSVPNDPKS----  354 (416)
T ss_dssp             HHHHHTTC--E-EGGG--------------SCSSSEEEEECGGGTCCHHHHHHHHHHT---TEECEECCCTTCSSC----
T ss_pred             HHHHhCCc--c-cccC--------------CCCCceeEEEecccCCCHHHHHHHHHHc---CeEEeCCcCCCCCCC----
Confidence            99998741  1 1111              112356677762    234445555554   44432    222111    


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEec--------cCChHHHHHHHHHHHhc
Q 016612          338 PCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDKALRT  383 (386)
Q Consensus       338 p~~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i~~l~~~l~~  383 (386)
                                       ...++.|||+..        .++++++.+.+.++|+.
T Consensus       355 -----------------~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         355 -----------------PFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             -----------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -----------------CCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence                             113456999973        37788888888888764

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.69  E-value=4.5e-16  Score=145.79  Aligned_cols=282  Identities=16%  Similarity=0.166  Sum_probs=180.9

Q ss_pred             hHHHHHHHHHhhcCCCc-----------eEEeCcHHHHH-HHHHHh----c------CCC---------CEEEecCCCCC
Q 016612           56 TRDALESLLAKLDKADR-----------ALCFTSGMAAL-AAVTHL----L------GTG---------EEIVAGDDLYG  104 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~-----------~i~~~~gt~al-~~~~~~----~------~~g---------~~Vlv~~~~~~  104 (386)
                      +-.++.+++++++|.++           .+++++||++. .++...    +      .+|         -.|++++..|.
T Consensus       114 iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~  193 (476)
T d1js3a_         114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS  193 (476)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred             HHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccH
Confidence            45567788899888752           57888888774 444321    1      111         15778888998


Q ss_pred             cHHHHHhhhcccCCcEEEEeCCC-----CHHHHHhhhCC------CceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEE
Q 016612          105 GTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL  173 (386)
Q Consensus       105 ~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li  173 (386)
                      +..    +.+...|+.++.++.+     |+++|++.+++      .+-+|+.+..++.+|.+.|+++|.++|++||++++
T Consensus       194 Si~----ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlH  269 (476)
T d1js3a_         194 SVE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLH  269 (476)
T ss_dssp             HHH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred             HHH----HHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEE
Confidence            885    5566778888888865     89999998863      24567778999999999999999999999999999


Q ss_pred             EeCCCCCCCccCCCC-------CCccEEEeccccccccCCCceEEEEEEcChhHHHHH--------HHhhh---------
Q 016612          174 VDNSIMSPVLSRPLE-------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--------YFLQN---------  229 (386)
Q Consensus       174 ~D~a~~~~~~~~~~~-------~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~--------~~~~~---------  229 (386)
                      +|++++.........       ..+|.++.++|||+..|.+  +|+++.+++......        .....         
T Consensus       270 VDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~--~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (476)
T d1js3a_         270 VDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYR  347 (476)
T ss_dssp             EECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC------------CCSCCCGG
T ss_pred             EecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc--ceeecccchHHHHHHHhcChhhhcccccccccccccc
Confidence            999997654332211       2579999999999988876  788888875432210        00000         


Q ss_pred             ----hcCCCCChhhHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEE
Q 016612          230 ----AEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  303 (386)
Q Consensus       230 ----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~  303 (386)
                          ..+........|+.+.  +...+....++..+.++.+.+.+++.+.++- ..                +...++++
T Consensus       348 ~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel-~~----------------~p~l~iV~  410 (476)
T d1js3a_         348 HWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEV-CA----------------EVTLGLVC  410 (476)
T ss_dssp             GSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE-CS----------------CCCSSEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EC----------------CCceEEEE
Confidence                0111222333344433  3445667777778888888888888764321 11                11346789


Q ss_pred             EEeC-CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec-c----CChHHHHHHH
Q 016612          304 FLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-I----EDVNDLISDL  377 (386)
Q Consensus       304 ~~~~-~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-~----~~~~~~i~~l  377 (386)
                      |.+. .....+++.+++...|...        + .+...              -+..++|++++ .    ++++.+++.|
T Consensus       411 Fr~~~~d~~n~~l~~~l~~~G~~~--------~-s~t~~--------------~g~~~lR~~i~n~~Tt~~did~~~~~i  467 (476)
T d1js3a_         411 FRLKGSDGLNEALLERINSARKIH--------L-VPCRL--------------RGQFVLRFAICSRKVESGHVRLAWEHI  467 (476)
T ss_dssp             EEESSCHHHHHHHHHHHHHHTSCB--------C-EEEEE--------------TTEEEEEEECCCTTCCHHHHHHHHHHH
T ss_pred             EEccCChHHHHHHHHHHHhcCCEE--------E-eeeeE--------------CCEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            9883 3444566777665444210        0 01000              01346999986 3    4566677777


Q ss_pred             HHHHhc
Q 016612          378 DKALRT  383 (386)
Q Consensus       378 ~~~l~~  383 (386)
                      ++..++
T Consensus       468 ~~~a~~  473 (476)
T d1js3a_         468 RGLAAE  473 (476)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.6e-16  Score=142.02  Aligned_cols=314  Identities=15%  Similarity=0.143  Sum_probs=189.6

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHhc--------
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL--------   90 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~~--------   90 (386)
                      +..+|..+|.+.++....-....     ..+.. ..+....+++.+.++.+.+...+.+||++|..+.+.+.        
T Consensus        52 ~~~lGh~~p~i~~Av~~q~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~  126 (404)
T d2byla1          52 AVNQGHCHPKIVNALKSQVDKLT-----LTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVK  126 (404)
T ss_dssp             TCTTCBTCHHHHHHHHHHHTTCC-----CCCTTEEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhcCCCHHHHHHHHHHHhhCC-----CcccccccchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhcc
Confidence            45578878877664322211111     01111 22456777888888888888999999999876333221        


Q ss_pred             ---CCCCEEEecCCCCCc-HHHHH--------hhhcccCCcEEEEeCCCCHHHHHhhhC-CCceEEEEeCCCCCCccccc
Q 016612           91 ---GTGEEIVAGDDLYGG-TDRLL--------SRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        91 ---~~g~~Vlv~~~~~~~-~~~~~--------~~~~~~~g~~~~~v~~~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~  157 (386)
                         ..+..++.....|++ +...+        ..........+..++..|++++++.+. +++.+|+++......|.+.+
T Consensus       127 ~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~  206 (404)
T d2byla1         127 GIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVP  206 (404)
T ss_dssp             CCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCC
T ss_pred             ccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccC
Confidence               123456655555543 32221        111122223466778889999999986 57889999988887887765


Q ss_pred             ----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh
Q 016612          158 ----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (386)
Q Consensus       158 ----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~  227 (386)
                          +++|.++|++||+++|+||++.. +-..     ......+|+++  ++|.+++ +.+-+|.++++ +++.+.+...
T Consensus       207 ~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~--~gK~l~g-G~~p~~av~~~-~~i~~~~~~~  282 (404)
T d2byla1         207 DPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVL--LGKALSG-GLYPVSAVLCD-DDIMLTIKPG  282 (404)
T ss_dssp             CTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGT-TSSCCEEEEEC-HHHHTTSCTT
T ss_pred             CHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEEE--ECchhhC-CCccceeeeec-hhhhhccCCC
Confidence                89999999999999999999852 2221     11233579885  5999865 22457888876 5565544333


Q ss_pred             hhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC
Q 016612          228 QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  307 (386)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~  307 (386)
                      ......+.++...+++...++.+..  +...++.+.+.+++.+.-       ..+.. +    +....++.|.+..+.+.
T Consensus       283 ~~~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l-------~~l~~-~----~i~~vRg~Gl~~~i~~~  348 (404)
T d2byla1         283 EHFSTYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNEL-------MKLPS-D----VVTAVRGKGLLNAIVIK  348 (404)
T ss_dssp             SSCCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH-------HTSCT-T----TEEEEEEETTEEEEEEC
T ss_pred             CCCcCCCcCHHHHHHHHHHHHHHHh--cCchhhhhHhhHHHHHHH-------Hhhcc-c----cceeeeecccEEEEEEe
Confidence            3333345567777776666654432  334444544444444311       00110 0    01122567888888873


Q ss_pred             C--HHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHH
Q 016612          308 S--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKAL  381 (386)
Q Consensus       308 ~--~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l  381 (386)
                      +  .....++.+++..+|+.+.+.                           ..+.||+++    +.+++++.++.++++|
T Consensus       349 ~~~~~~~~~~~~~l~~~Gvl~~~~---------------------------~~~~i~l~PpL~it~~~id~~~~~l~~al  401 (404)
T d2byla1         349 ETKDWDAWKVCLRLRDNGLLAKPT---------------------------HGDIIRFAPPLVIKEDELRESIEIINKTI  401 (404)
T ss_dssp             CCSSCCHHHHHHHHHHTTEECEEE---------------------------ETTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHhCCeEEecC---------------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence            2  234566777777778764321                           123488885    4588888889998888


Q ss_pred             hc
Q 016612          382 RT  383 (386)
Q Consensus       382 ~~  383 (386)
                      ++
T Consensus       402 ~~  403 (404)
T d2byla1         402 LS  403 (404)
T ss_dssp             HT
T ss_pred             Hc
Confidence            75

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.64  E-value=1.1e-13  Score=125.66  Aligned_cols=284  Identities=17%  Similarity=0.137  Sum_probs=179.4

Q ss_pred             CCchHHHHH----HHHHhhcCCC-----ceEEeCcHHHHH-HHHHHhcCCCCEEEecCCCCCcHHHHHhhhcc--cC---
Q 016612           53 GNPTRDALE----SLLAKLDKAD-----RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP--KT---  117 (386)
Q Consensus        53 g~~~~~~l~----~~l~~~~g~~-----~~i~~~~gt~al-~~~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~--~~---  117 (386)
                      |.....++|    +++.++|+.+     -.+-..||+.|. .+..++++|||+|+..+..++++..+- ....  ..   
T Consensus        71 G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~  149 (470)
T d1rv3a_          71 GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISAT  149 (470)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHH
T ss_pred             CchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccc
Confidence            555555555    4457889886     245567898775 577889999999998877665553110 0000  11   


Q ss_pred             --CcEEEEeCC------CCHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC-----CCCc
Q 016612          118 --GVVVKRVNT------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVL  183 (386)
Q Consensus       118 --g~~~~~v~~------~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-----~~~~  183 (386)
                        ..+...++.      .|.+++++... .++++|++-...+|  ...|++++.++|++.|.+|++|.+|.     .+.+
T Consensus       150 ~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~  227 (470)
T d1rv3a_         150 SIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV  227 (470)
T ss_dssp             HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS
T ss_pred             cceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhcccccc
Confidence              124444432      28899998776 68999998776665  56799999999999999999999986     3567


Q ss_pred             cCCCCCCccEEEeccccccccCCCceEEEEEEcCh--------------hHHHHHHHhhhhcCCCCChhhHH-----HHH
Q 016612          184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEGSGLAPFDCW-----ICL  244 (386)
Q Consensus       184 ~~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~  244 (386)
                      ++|+. .+|++++|+||+|.||.   +|+|.++++              ++.+++.....-+..+.......     ++.
T Consensus       228 ~sPl~-~aDvvt~tTHKtlrGPr---gGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~  303 (470)
T d1rv3a_         228 PSPFE-HCHVVTTTTHKTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK  303 (470)
T ss_dssp             CCGGG-TCSEEEEESSGGGCCCS---CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred             CChhh-eeeeeeeehhhhccCCc---ceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHH
Confidence            78886 57999999999998875   699998754              35555544433222222211111     112


Q ss_pred             hcCC-cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC----CHHhHHHHHhhc
Q 016612          245 RGVK-TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----SLALSKHVVETT  319 (386)
Q Consensus       245 ~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l  319 (386)
                      ..+. .+.....+..+|++.|.+.|.++.-  .+ ..+              .-...++.+.+.    +...+++++++.
T Consensus       304 ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~--~v-~~g--------------gTdnHlvlvdl~~~g~~g~~ae~~Le~~  366 (470)
T d1rv3a_         304 QAMTPEFKEYQRQVVANCRALSAALVELGY--KI-VTG--------------GSDNHLILVDLRSKGTDGGRAEKVLEAC  366 (470)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-GGG--------------SCSSSEEEEEGGGGTCCHHHHHHHHHHT
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHhCCc--ee-ccC--------------CCCCceEEEeecccCCcHHHHHHHHHHc
Confidence            2222 4567788888999999999998741  11 111              112456666662    244455666655


Q ss_pred             Ccceec-cCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec--------cCChHHHHHHHHHHHh
Q 016612          320 KYFSIT-VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDKALR  382 (386)
Q Consensus       320 ~~~gi~-~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i~~l~~~l~  382 (386)
                      ++..-. .-++.. +                     +..++.|||+..        .+++.++.+.|.++|+
T Consensus       367 gI~~Nkn~iP~D~-~---------------------~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         367 SIACNKNTCPGDK-S---------------------ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             TEECEEECCSSCS-C---------------------TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcEECCCcCCCCC-C---------------------CCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            432111 112221 0                     123456999973        2777777777777774

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.62  E-value=5.7e-14  Score=127.25  Aligned_cols=207  Identities=18%  Similarity=0.156  Sum_probs=132.7

Q ss_pred             HHHHHHhhcCCCc-----eEEeCcHHHHH-HHHHHhcCCCCEEEecCCCCCcHHHHHh----hhcccCCc--EEEEeCC-
Q 016612           60 LESLLAKLDKADR-----ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTGV--VVKRVNT-  126 (386)
Q Consensus        60 l~~~l~~~~g~~~-----~i~~~~gt~al-~~~~~~~~~g~~Vlv~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~-  126 (386)
                      ..+++.++|+.+.     .+-..||+.|. .+..++++|||+|+..++.++++..+-.    .-....|.  +...+.. 
T Consensus        78 a~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d  157 (463)
T d2a7va1          78 CQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN  157 (463)
T ss_dssp             HHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBC
T ss_pred             HHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeecc
Confidence            3566788999884     36678899775 5778899999999988776665532200    01111222  2222221 


Q ss_pred             -----CCHHHHHhhhC-CCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC-----CCCccCCCCCCccEEE
Q 016612          127 -----CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVM  195 (386)
Q Consensus       127 -----~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-----~~~~~~~~~~~~di~~  195 (386)
                           .|.+++++... .++++|++-...+|  ...|++++.++|++.|.++++|.+|.     .+.+++|.. .+|+++
T Consensus       158 ~~~~~IDyd~~~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~-~aDvvt  234 (463)
T d2a7va1         158 PKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVT  234 (463)
T ss_dssp             TTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEE
T ss_pred             CCCCcCcHHHHHHHHhhcCCceEEecccccc--cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh-hhhhhh
Confidence                 28899988776 68999998776665  56799999999999999999999985     456778886 579999


Q ss_pred             eccccccccCCCceEEEEEEcCh--------------hHHHHHHHhhhhcCCCCChhhHHHH-----HhcC-CcHHHHHH
Q 016612          196 HSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEGSGLAPFDCWIC-----LRGV-KTMALRVE  255 (386)
Q Consensus       196 ~S~sK~~~g~~g~~~G~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~  255 (386)
                      +|+||+|.||.   +|+|.++++              ++.+++.........+.......+.     ..++ ..+..+..
T Consensus       235 ~tTHKTlrGPr---gGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~  311 (463)
T d2a7va1         235 TTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL  311 (463)
T ss_dssp             EESSGGGCSCS---CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             chhhhhhcCCC---ceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHH
Confidence            99999998875   699998863              4555554433222222111111111     1122 24567778


Q ss_pred             HHHHHHHHHHHHHhhCC
Q 016612          256 KQQDNAQKIAEFLASHP  272 (386)
Q Consensus       256 ~~~~~~~~l~~~l~~~~  272 (386)
                      +..+|++.|.+.|.++.
T Consensus       312 qVv~NAk~La~~L~~~G  328 (463)
T d2a7va1         312 QVLKNARAMADALLERG  328 (463)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            88899999999998874

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.60  E-value=3.1e-14  Score=130.94  Aligned_cols=317  Identities=13%  Similarity=0.126  Sum_probs=177.7

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCC-chHHHHHHHHHhhcCCCceEEeCcHHHHHHHHHHh-------c-
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKADRALCFTSGMAALAAVTHL-------L-   90 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~g~~~~i~~~~gt~al~~~~~~-------~-   90 (386)
                      +..+|.-+|.+.++......+    ..+ .+.... .....+++.+.++.+.+...+..+|+++......+       . 
T Consensus        50 ~~~lGh~~p~v~~Ai~~q~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~  124 (404)
T d1z7da1          50 SVNQGHCHPNILNAMINQAKN----LTI-CSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVK  124 (404)
T ss_dssp             TTTTCBTCHHHHHHHHHHHTT----CSC-CCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHhhhcCcHHHHHHHHHHHHh----CCC-cccccchHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcc
Confidence            445777777766642221111    111 111122 35677788888888888888999999887532221       0 


Q ss_pred             ---CCCCEEEecCCCCCcHHHHHhhhcccC---------CcEEEEeCCCCHHHHHhhhC-CCceEEEEeCCCCCCccccc
Q 016612           91 ---GTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD  157 (386)
Q Consensus        91 ---~~g~~Vlv~~~~~~~~~~~~~~~~~~~---------g~~~~~v~~~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~  157 (386)
                         .....++.....|++............         -..+..++.++.+.++..+. +++.+|+++......|.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~  204 (404)
T d1z7da1         125 KIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVP  204 (404)
T ss_dssp             CCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCC
T ss_pred             cccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccC
Confidence               122356665555554422111111000         11344455668888888776 57899999998888888876


Q ss_pred             ----HHHHHHHHHHcCCEEEEeCCCCC-C---Ccc--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh
Q 016612          158 ----IRKIAEMAHAHGALLLVDNSIMS-P---VLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (386)
Q Consensus       158 ----l~~i~~la~~~~~~li~D~a~~~-~---~~~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~  227 (386)
                          +++|.++|++||+++|+||+++. +   ...  ......+|+++  ++|.+++ +.+.+|.++++ +++.+.+...
T Consensus       205 ~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt--~gK~l~g-G~~p~~~v~~~-~~i~~~~~~~  280 (404)
T d1z7da1         205 SDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVIL--LGKALSG-GHYPISAVLAN-DDIMLVIKPG  280 (404)
T ss_dssp             CTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGT-TSSCCEEEEEC-HHHHTTCCTT
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEE--EcccccC-CCCCcccccch-HHHHccCCCC
Confidence                89999999999999999999852 2   111  22234679885  5999965 22457888876 4455433333


Q ss_pred             hhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC
Q 016612          228 QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  307 (386)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~  307 (386)
                      ........++...+++...++.+..  +...++..+..+.+.+.-      ...+..++..    ...++.|.++.+.+.
T Consensus       281 ~~~~T~~gnpl~~aaa~a~L~~~~~--~~~~~~~~~~~~~~~~~l------~~~~~~~~~v----~~vrg~Gl~~~i~~~  348 (404)
T d1z7da1         281 EHGSTYGGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENL------KRELKDSKIV----RDVRGKGLLCAIEFK  348 (404)
T ss_dssp             CCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH------HHHHTTCTTE----EEEEEETTEEEEEEC
T ss_pred             CcCcCCCCCcchhhhhhhhhhhhhc--chhhhhhccchhHHHHHH------HHHHhcCCCe----EEEEeeCcEEEEEEc
Confidence            2222234566666666555442211  222223322222221100      0001111110    122567888999885


Q ss_pred             CH-HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHh
Q 016612          308 SL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALR  382 (386)
Q Consensus       308 ~~-~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~  382 (386)
                      +. ....++.+.+..+|+.+.+.                           .++.||+++    +.+++++.++.|+++|+
T Consensus       349 ~~~~~~~~~~~~l~~~Gl~~~~~---------------------------~~~~ir~~Ppl~it~~~id~~~~~l~~alk  401 (404)
T d1z7da1         349 NELVNVLDICLKLKENGLITRDV---------------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVK  401 (404)
T ss_dssp             TTTCCHHHHHHHHHHTTEECCEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHhCCeEEecC---------------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence            43 33556777777777754321                           133478874    45888999999999988


Q ss_pred             cC
Q 016612          383 TG  384 (386)
Q Consensus       383 ~~  384 (386)
                      ++
T Consensus       402 ~~  403 (404)
T d1z7da1         402 FF  403 (404)
T ss_dssp             HH
T ss_pred             hh
Confidence            65

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3.8e-15  Score=140.19  Aligned_cols=213  Identities=14%  Similarity=0.065  Sum_probs=137.5

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCCC---------EEEecCCCCCcHHHHHhhhcccCCcEEE
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE---------EIVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g~---------~Vlv~~~~~~~~~~~~~~~~~~~g~~~~  122 (386)
                      ++|...++++.+++++|.+.++.++||++|.. ++..++++|+         .+..++..|..+.    ......|..++
T Consensus        72 ~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~G~~~~  147 (467)
T d2v1pa1          72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ----GHSQINGCTVR  147 (467)
T ss_dssp             SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHH----HHHHHTTCEEE
T ss_pred             CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccH----HHHHHcCCeee
Confidence            45788999999999999999999999998865 4555554443         3444444343332    33446677776


Q ss_pred             EeCC---------------CCHHHHHhhhC----CCceEEEEeCCCCCCcccc----cHHHHHHHHHHcCCEEEEeCCCC
Q 016612          123 RVNT---------------CDLDEVASAIG----PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM  179 (386)
Q Consensus       123 ~v~~---------------~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~----~l~~i~~la~~~~~~li~D~a~~  179 (386)
                      .++.               .|++++++.+.    +++++++++..+|..|...    ++++|.++|++||+++++|+++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~  227 (467)
T d2v1pa1         148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             ecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            6543               27889988875    4578899999988766543    58899999999999999999975


Q ss_pred             CCCc-----------cCC-------CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhh---h-c----CC
Q 016612          180 SPVL-----------SRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---A-E----GS  233 (386)
Q Consensus       180 ~~~~-----------~~~-------~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~---~-~----~~  233 (386)
                      .+..           ...       ....+|++.+|.+|.++++.   +|++..+++.+.........   . .    ..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (467)
T d2v1pa1         228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG  304 (467)
T ss_dssp             HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC
T ss_pred             hccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC---ceeEEecchhhhhHHHhhcccccccccCcchh
Confidence            3211           000       01247899999999987654   68888887665443322111   1 1    11


Q ss_pred             CCChhhHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHhhCC
Q 016612          234 GLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHP  272 (386)
Q Consensus       234 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~  272 (386)
                      +.......+...  .........++..++++.+.+.|.+..
T Consensus       305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (467)
T d2v1pa1         305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG  345 (467)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            222222222111  111113445666778888888888754

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=5.9e-14  Score=128.07  Aligned_cols=310  Identities=15%  Similarity=0.187  Sum_probs=178.1

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCC-CCchHHHHHHHHHhhcCCC--ceEEeCcHHHHHHHHHH---hcCCC
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH---LLGTG   93 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~~~~---~~~~g   93 (386)
                      +..+|.-+|.+.++....-.   + . ...+.. ..+...++.+.+.+.....  ...+++||++|+...+.   .....
T Consensus        48 ~~~lGh~hp~v~~a~~~~~~---~-~-~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r  122 (387)
T d1vefa1          48 VANLGHGNPEVVEAVKRQAE---T-L-MAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGR  122 (387)
T ss_dssp             TCTTCBTCHHHHHHHHHHHH---H-C-CCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred             hhhhcCCcHHHHHHHHHHHH---h-h-cccccccCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhccc
Confidence            55588877777765332111   1 1 111112 3456666666666665444  57778899999864333   23345


Q ss_pred             CEEEecCCCCCcH-HHHH--------hhhcccCCcEEEEeCCCCHHHHHhhhCCCceEEEEeCCCCCCccccc----HHH
Q 016612           94 EEIVAGDDLYGGT-DRLL--------SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRK  160 (386)
Q Consensus        94 ~~Vlv~~~~~~~~-~~~~--------~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~  160 (386)
                      ..|+.-..+|++. ...+        +.........+..++.+|.+.+++.+++++.+|+++......|...+    +++
T Consensus       123 ~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~  202 (387)
T d1vefa1         123 KKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRA  202 (387)
T ss_dssp             CEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHH
T ss_pred             ceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEECCCCCCCCccCCHHHHHH
Confidence            6777777766554 2221        11112222356778888999999999999999999988777787765    999


Q ss_pred             HHHHHHHcCCEEEEeCCCCC-CCccC-----CCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhhhhcCCC
Q 016612          161 IAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (386)
Q Consensus       161 i~~la~~~~~~li~D~a~~~-~~~~~-----~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~  234 (386)
                      |.++|++||+++|.||+++. |-...     .....+|+++.  +|.+++  |+..+.+++. +++.+............
T Consensus       203 l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~--gK~l~g--G~~~~~~~~~-~~~~~~~~~~~~g~T~~  277 (387)
T d1vefa1         203 AREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTL--AKALGG--GVPLGVAVMR-EEVARSMPKGGHGTTFG  277 (387)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGT--TSSCEEEEEE-HHHHHTSCTTSSCCSST
T ss_pred             HHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeee--cccCCC--Cccccccccc-eeeeeccccCCccccCC
Confidence            99999999999999999862 22221     12346799875  898865  3445666665 33444332222222334


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHH
Q 016612          235 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH  314 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  314 (386)
                      .++...+++...++.+..  ....++.+.+.+++.+.-       ..+.. +.    ....++.|.++.+.+++.. ...
T Consensus       278 gnPla~aaa~a~L~~l~~--~~~~~~v~~~g~~l~~~L-------~~l~~-~~----v~~vrg~Gl~~~ie~~~~~-~~~  342 (387)
T d1vefa1         278 GNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKL-------RAIPS-PK----IREVRGMGLMVGLELKEKA-APY  342 (387)
T ss_dssp             TCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHH-------HTSCC-TT----EEEEEEETTEEEEEESSCS-HHH
T ss_pred             CCcchhhhcccchhhccc--ccccchHhhhhHHHHHHH-------HhcCC-Cc----eEEEeecceEEEEEEeCCc-hHH
Confidence            566667666665554422  233344444443333210       00110 00    1123567888999986543 333


Q ss_pred             HHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 016612          315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  381 (386)
Q Consensus       315 l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  381 (386)
                      +.+.+...++.....                           ..+.+|+++++    ++++++++.++++|
T Consensus       343 ~~~~~~~~g~l~~~~---------------------------g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         343 IARLEKEHRVLALQA---------------------------GPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             HHHHHHHHCEECEES---------------------------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCeEEec---------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence            444434444432111                           13347887654    66666666666665

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.56  E-value=1.4e-13  Score=122.25  Aligned_cols=311  Identities=13%  Similarity=0.066  Sum_probs=169.9

Q ss_pred             CCCCCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC--ceEEeCcHHHHHH-HHHHhcCCC
Q 016612           17 SNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTG   93 (386)
Q Consensus        17 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~gt~al~-~~~~~~~~g   93 (386)
                      +|.|++....+|.+.++-.  .  .......+|.  ..+..+++++.+++++|.+  +.+++++||+++. ++..+.+++
T Consensus         3 ~f~nd~~~g~~P~v~eAl~--~--~~~~~~~~y~--~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~   76 (340)
T d1svva_           3 SFVNDYSVGMHPKILDLMA--R--DNMTQHAGYG--QDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPW   76 (340)
T ss_dssp             ECSCSCSSCCCHHHHHHHH--H--HTTCCCCSTT--CSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTT
T ss_pred             CcccCCCCCCCHHHHHHHH--H--HhhcCCCCCC--CCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhc
Confidence            4456665556777776522  1  1112233343  2357889999999999987  4566677889976 566788999


Q ss_pred             CEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---CHHHHHhhhC------CCc-eEEEEeCCCCCCcccc---cHHH
Q 016612           94 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIG------PWT-KLVWVESPTNPRQQIC---DIRK  160 (386)
Q Consensus        94 ~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---d~~~l~~~~~------~~~-~~v~~~~~~nptG~~~---~l~~  160 (386)
                      +.+++..+.|.+..... .............+..   +.+...+...      ..+ .++++..++| .|.+.   ++..
T Consensus        77 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  154 (340)
T d1svva_          77 EAVIATQLGHISTHETG-AIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTE-VGTQYTKQELED  154 (340)
T ss_dssp             EEEEEETTSHHHHSSTT-HHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCT-TSCCCCHHHHHH
T ss_pred             cccccccccceeeeecc-cccccceeeeecccccccccchhHHHHhhhhhcccCCcceeeeeccccc-ccccccHHHhhh
Confidence            99998888765542211 1122222233332221   2222222211      223 3444445555 45554   4777


Q ss_pred             HHHHHHHcCCEEEEeCCCCCCCccCCC--------CCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh-hhhc
Q 016612          161 IAEMAHAHGALLLVDNSIMSPVLSRPL--------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAE  231 (386)
Q Consensus       161 i~~la~~~~~~li~D~a~~~~~~~~~~--------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~-~~~~  231 (386)
                      +.+.|+++|.++++|+++..+......        ....++...+..|...++   ..++............... ....
T Consensus       155 ~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  231 (340)
T d1svva_         155 ISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMF---GEALIILNDALKPNARHLIKQRGA  231 (340)
T ss_dssp             HHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSS---CEEEEECSGGGCTTHHHHHHHTTC
T ss_pred             hhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccc---cccccccchhhhhhhhhhcccccC
Confidence            889999999999999998633222111        112456666666665332   2455554433222111122 2222


Q ss_pred             CCCCChhhHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCH
Q 016612          232 GSGLAPFDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  309 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~  309 (386)
                      ..........+....++  ......+....+...+...++...         +.      +..   +..++++.+.+++ 
T Consensus       232 ~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---------~~------~~~---p~~~~~v~~~~~~-  292 (340)
T d1svva_         232 LMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACG---------IR------LAW---PSASNQLFPILEN-  292 (340)
T ss_dssp             CCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT---------CC------BSS---CCSSSEECBEEEH-
T ss_pred             ccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCC---------Ce------eec---CCCceEEEEeCCH-
Confidence            22222222333333232  223334445555556666666542         11      110   2245667777654 


Q ss_pred             HhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 016612          310 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       310 ~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  384 (386)
                      ....++.+++...++....+                           .++.||+|+++..+++.|+.+.++|+++
T Consensus       293 ~~~~~l~~~~~~~~~~~~~~---------------------------~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         293 TMIAELNNDFDMYTVEPLKD---------------------------GTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             HHHHHHTTTEECEEEEEETT---------------------------TEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhhcccccCC---------------------------CCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            45777777776666643321                           2456999999888888888888888764

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.53  E-value=1e-13  Score=125.90  Aligned_cols=279  Identities=11%  Similarity=0.006  Sum_probs=164.8

Q ss_pred             hHHHHHHHHHhhcCCCc--eEEe-CcHHHH-HHHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           56 TRDALESLLAKLDKADR--ALCF-TSGMAA-LAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~--~i~~-~~gt~a-l~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +.+++++.++++++.++  .+++ ++++++ +.++ ..+..+|+++++..  ++.+...|..+++..|..+..+...   
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~--~g~~~~~~~~~~~~~g~~~~~~~~~~~~  126 (361)
T d2c0ra1          49 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVM--TGSWASKALKEAKLIGDTHVAASSEASN  126 (361)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEE--CSHHHHHHHHHHHHHSCEEEEEECGGGT
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEe--echhhhhhhhhhhhcCceeeeecccccc
Confidence            67889999999999863  4444 444444 4444 44778888887654  4444555678888899888877653   


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccC
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGH  205 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~  205 (386)
                        +++++++.+..++ .+   +.+|.||...++++|.++|+++|+++++|.+++.+..+-.. ...|+.+.|.+|.++.+
T Consensus       127 ~~~~~~~~~~~~~~~-~~---~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~-~~~di~~~s~~k~~~~~  201 (361)
T d2c0ra1         127 YMTLPKLQEIQLQDN-AA---YLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDL-NQFGLVYAGAQKNLGPS  201 (361)
T ss_dssp             TCSCCCGGGCCCCTT-EE---EEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCG-GGCSEEEEETTTTTCCS
T ss_pred             ccchhhhhhhcccCc-ce---EEEEecccceecceEEEeeccCCceEEEEeecccccccccc-ccceeEEEecccccccc
Confidence              6666776665443 33   34567899999999999999999999999999988865222 24567777889999766


Q ss_pred             CCceEEEEEEcChhHHH------------HHHHhhhhcCCCCChhhHHHHH-----hcCCcHHHHHHHHHHHHHHHHHHH
Q 016612          206 SDVMAGVLAVKGERLAK------------ELYFLQNAEGSGLAPFDCWICL-----RGVKTMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       206 ~g~~~G~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l  268 (386)
                      ++  +++++.. +.+.+            ......................     ........+..+.......+....
T Consensus       202 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (361)
T d2c0ra1         202 GV--TVVIVRE-DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAI  278 (361)
T ss_dssp             SC--EEEEEEG-GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cC--cEEEEEh-HHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhh
Confidence            54  3444443 32211            0111111111111111111111     111222233333334444444444


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCH
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  348 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~  348 (386)
                      ........ .. ..          ...++ ..+++|.+++....+.+.+.|+.+||.+..|...                
T Consensus       279 ~~~~~~~~-~~-~~----------~~~rS-~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~----------------  329 (361)
T d2c0ra1         279 DQSGGFYR-GC-VD----------VDSRS-DMNITFRLASEELEKEFVKASEQEGFVGLKGHRS----------------  329 (361)
T ss_dssp             HTSTTSSE-ES-SC----------GGGBC-SSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT----------------
T ss_pred             hhcccccc-cC-CC----------hhhcc-ceEEEEECCCcccHHHHHHHHHHCCCEEecCCCc----------------
Confidence            43321100 00 00          01112 3467888877777888999999999987776431                


Q ss_pred             HHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 016612          349 EVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  382 (386)
Q Consensus       349 ~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  382 (386)
                               -+.||||+..    |+++.+++.|++..+
T Consensus       330 ---------~g~~RIs~~~~~~~edv~~Lv~~l~~~~~  358 (361)
T d2c0ra1         330 ---------VGGLRASIYNAVPYESCEALVQFMEHFKR  358 (361)
T ss_dssp             ---------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ---------CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence                     1229999854    666666666666544

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.4e-13  Score=127.46  Aligned_cols=320  Identities=13%  Similarity=0.113  Sum_probs=175.4

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCC---CceEEeCcHHHHHHHHHH---hcCCC
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAAVTH---LLGTG   93 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~gt~al~~~~~---~~~~g   93 (386)
                      ...+|.-+|++.++....-   ............++...++.+.+.+.+..   +..++++||++|+...+.   .....
T Consensus        51 ~~~lGh~~p~i~~ai~~q~---~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r  127 (425)
T d1sffa_          51 VLNTGHLHPKVVAAVEAQL---KKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKR  127 (425)
T ss_dssp             TCTTCBTCHHHHHHHHHHT---TTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTC
T ss_pred             hhcccCCcHHHHHHHHHHH---hhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcc
Confidence            4457777777766432211   11111111111235667778888887753   356778999999864333   23344


Q ss_pred             CEEEecCCCCCcHHHHHhhhcccC----------CcEEEEeCCC-------------CHHHHHhhh--CCCceEEEEeCC
Q 016612           94 EEIVAGDDLYGGTDRLLSRVTPKT----------GVVVKRVNTC-------------DLDEVASAI--GPWTKLVWVESP  148 (386)
Q Consensus        94 ~~Vlv~~~~~~~~~~~~~~~~~~~----------g~~~~~v~~~-------------d~~~l~~~~--~~~~~~v~~~~~  148 (386)
                      .+|+.....|++.......+....          .......+..             +.+++....  ..++.+|+++..
T Consensus       128 ~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi  207 (425)
T d1sffa_         128 SGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPV  207 (425)
T ss_dssp             CEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSB
T ss_pred             cceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCc
Confidence            677777776766432211211100          0111111111             111111111  246789999988


Q ss_pred             CCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcCh
Q 016612          149 TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (386)
Q Consensus       149 ~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~  218 (386)
                      ....|.+.+    ++.|.++|++||+++|+||+++. +-..     ......+|+++  ++|.++|  |+.+|.++++ +
T Consensus       208 ~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~g--G~P~~av~~~-~  282 (425)
T d1sffa_         208 QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAG--GFPLAGVTGR-A  282 (425)
T ss_dssp             CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGT--SSCCEEEEEE-H
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcccee--cccccCC--CcceEEEEEc-H
Confidence            777777653    89999999999999999999863 2221     22234679887  5999965  3457888887 4


Q ss_pred             hHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCC
Q 016612          219 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  298 (386)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~  298 (386)
                      ++.+.+.........+.++...+++...++.+..  +...++.+.+.+++.+.-.      ..++.++.    ....++.
T Consensus       283 ~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~l~------~~~~~~~~----v~~vrg~  350 (425)
T d1sffa_         283 EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLL------AIAEKHPE----IGDVRGL  350 (425)
T ss_dssp             HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHH------HHHHTCTT----EEEEEEE
T ss_pred             HHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH--hhhhhhhhhhhhhhhhhhh------hhHhhCCc----eEEEEcc
Confidence            4554443333333345556667666665554322  2223333333333221100      00000000    0112456


Q ss_pred             CceEEEEeC--------CHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----
Q 016612          299 GSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----  366 (386)
Q Consensus       299 ~~~~~~~~~--------~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----  366 (386)
                      |.++.+.+.        +......+.+++..+|+.+.+.+.                         ..+.||+++.    
T Consensus       351 Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~-------------------------~~n~i~~~PpL~it  405 (425)
T d1sffa_         351 GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP-------------------------YYNVLRILVPLTIE  405 (425)
T ss_dssp             TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-------------------------TSCEEEECCCTTCC
T ss_pred             ccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCC-------------------------CCCEEEEECCCCCC
Confidence            788888762        345567788888888876543221                         2345888864    


Q ss_pred             cCChHHHHHHHHHHHhcC
Q 016612          367 IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       367 ~~~~~~~i~~l~~~l~~~  384 (386)
                      .+++++.++.++++|+++
T Consensus       406 ~~eid~~l~~l~~al~ei  423 (425)
T d1sffa_         406 DAQIRQGLEIISQCFDEA  423 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            477888888888888763

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=6.6e-14  Score=129.44  Aligned_cols=284  Identities=12%  Similarity=0.072  Sum_probs=165.8

Q ss_pred             chHHHHHHHHHhhcCC--CceEEeCcHHHHHHHHHHhc--------CCCCEEEecCCCCCc-HHHHHhhhcccC------
Q 016612           55 PTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLL--------GTGEEIVAGDDLYGG-TDRLLSRVTPKT------  117 (386)
Q Consensus        55 ~~~~~l~~~l~~~~g~--~~~i~~~~gt~al~~~~~~~--------~~g~~Vlv~~~~~~~-~~~~~~~~~~~~------  117 (386)
                      +...++.+.+.+....  +...+.+||++|+.+.+.+.        .++.+|+.-...|++ +.... .+....      
T Consensus        86 ~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~-~~t~~~~~~~~~  164 (429)
T d1s0aa_          86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAM-SVCDPDNSMHSL  164 (429)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHH-TTSCTTTTTGGG
T ss_pred             hHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhh-hhcCCccccccc
Confidence            3445555666665543  36778899998885332211        234567766666654 33221 111100      


Q ss_pred             ----CcEEEEeCC-----------CCHHHHHhhh---CCCceEEEEeCCC-CCCcccc-c---HHHHHHHHHHcCCEEEE
Q 016612          118 ----GVVVKRVNT-----------CDLDEVASAI---GPWTKLVWVESPT-NPRQQIC-D---IRKIAEMAHAHGALLLV  174 (386)
Q Consensus       118 ----g~~~~~v~~-----------~d~~~l~~~~---~~~~~~v~~~~~~-nptG~~~-~---l~~i~~la~~~~~~li~  174 (386)
                          .......+.           .+.+++++.+   .+++.+|+++... +..|... |   +++|.++|++||+++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~  244 (429)
T d1s0aa_         165 WKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIA  244 (429)
T ss_dssp             GTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEE
T ss_pred             cCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceeh
Confidence                001111111           1344444433   3688999999765 5444544 3   89999999999999999


Q ss_pred             eCCCCC-CCcc-----CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh-----hhcCCCCChhhHHHH
Q 016612          175 DNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----NAEGSGLAPFDCWIC  243 (386)
Q Consensus       175 D~a~~~-~~~~-----~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  243 (386)
                      ||++.. |-..     ......+|+++.  +|.+++ +++.++.++++ +++.+.+....     .....+.++...+++
T Consensus       245 DEV~tGfGRtG~~~~~~~~~v~PDi~~~--gK~l~g-G~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa  320 (429)
T d1s0aa_         245 DEIATGFGRTGKLFACEHAEIAPDILCL--GKALTG-GTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAA  320 (429)
T ss_dssp             ECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGT-SSSCCEEEEEC-HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHH
T ss_pred             hhccccccccccccccccceeccccccc--cccccc-ccccccchhhH-HHHHhccCCCCCcceeecCCCCCCcccchhh
Confidence            999863 2222     122346799875  898854 33457888876 55665443211     122234556666666


Q ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcce
Q 016612          244 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  323 (386)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g  323 (386)
                      ...++.+..  +...++++++.+++++.-       ..+.+.+.+    .+.++.|.++.+.+..+.....+.+.+..+|
T Consensus       321 ~a~L~~i~~--~~~~~~~~~~g~~l~~~L-------~~l~~~~~v----~~vrg~Gl~~~~e~~~~~~~~~~~~~~~~~G  387 (429)
T d1s0aa_         321 NASLAILES--GDWQQQVADIEVQLREQL-------APARDAEMV----ADVRVLGAIGVVETTHPVNMAALQKFFVEQG  387 (429)
T ss_dssp             HHHHHHHHT--CHHHHHHHHHHHHHHHHH-------GGGGGCTTE----EEEEEETTEEEEEESSCBCHHHHHHHHHHTT
T ss_pred             hcccccccc--ccccchhhHHHHHHHHHH-------HHhccCCce----EEEeecccEEEEEecCcccHHHHHHHHHHCC
Confidence            665554322  345556666665555421       011111111    2336778899999876666778888888888


Q ss_pred             eccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe----ccCChHHHHHHHHHHHhcC
Q 016612          324 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRTG  384 (386)
Q Consensus       324 i~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~~~~~i~~l~~~l~~~  384 (386)
                      +.+.+.+                            +.||+++    +.++++++++.|+++|++.
T Consensus       388 l~~~~~g----------------------------~~i~~~Ppl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         388 VWIRPFG----------------------------KLIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             EECCCBT----------------------------TEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             cEEEecC----------------------------CEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence            8654322                            2377775    4588889999999988764

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=7.5e-14  Score=126.45  Aligned_cols=282  Identities=13%  Similarity=-0.009  Sum_probs=169.5

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeC-cHHHHH-HHH-HHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           56 TRDALESLLAKLDKAD--RALCFT-SGMAAL-AAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~-~gt~al-~~~-~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +.+++++.++++++.+  ..++++ +++++. .++ ..+..+++.+++....+..  ..+...++..+...+.....   
T Consensus        47 l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  124 (360)
T d1bjna_          47 VAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWA--ASAIKEAKKYCTPNVFDAKVTVD  124 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHH--HHHHHHHTTTSEEEEEECEEEET
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccchh--hhhHHHHhhcCccceeeccccCC
Confidence            5788999999999986  355544 444554 443 4467778888876554433  33456777888776665532   


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCccCCCCCCccEEEeccccccccC
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGH  205 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~di~~~S~sK~~~g~  205 (386)
                        +.+++++.+..+++++++.+.+|-||...+.+.+.  ++.+++.+++|.+++.+... ....+.|+.+.|.+|++++|
T Consensus       125 ~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~-vd~~~~dv~~~ss~k~~~~~  201 (360)
T d1bjna_         125 GLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRP-IDVSRYGVIYAGAQKNIGPA  201 (360)
T ss_dssp             TEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSC-CCGGGCSEEEEETTTTTSST
T ss_pred             CcchhhhhhhhccCCceeEEEecccccccCcccccee--cccccceeeeeeecccccee-eeeccceeEEEEcccccccC
Confidence              55566677778899999999999999998876654  46679999999998877654 22346899999999999887


Q ss_pred             CCceEEEEEEcChhHHH---------HHHHhhhhcCC-CCChhhHHHH-H-----hcCCcHHHHHHHHHHHHHHHHHHHh
Q 016612          206 SDVMAGVLAVKGERLAK---------ELYFLQNAEGS-GLAPFDCWIC-L-----RGVKTMALRVEKQQDNAQKIAEFLA  269 (386)
Q Consensus       206 ~g~~~G~i~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~l~~~l~  269 (386)
                      +|  +++++..+.....         ........... .........+ .     ..........++..+........+.
T Consensus       202 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (360)
T d1bjna_         202 GL--TIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVID  279 (360)
T ss_dssp             TC--EEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--ceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            76  5666555432111         01111111111 1111111111 1     1112223333334444444444444


Q ss_pred             hCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHH
Q 016612          270 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  349 (386)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~  349 (386)
                      ....   ......           .......+++|.+++....+.+.+.+..+|+....|+..                 
T Consensus       280 ~~~~---~~~~~~-----------~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~-----------------  328 (360)
T d1bjna_         280 NSDF---YRNDVA-----------KRNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRV-----------------  328 (360)
T ss_dssp             HCSS---EECCBC-----------GGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTT-----------------
T ss_pred             cccc---ccccCC-----------cccccceEEEEEcCCcccHHHHHHHHHHCCCEeecCCCc-----------------
Confidence            4331   111100           111124678899977667788888888899987766421                 


Q ss_pred             HHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 016612          350 VRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  383 (386)
Q Consensus       350 ~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  383 (386)
                              -+.||||+..    ++++.+++.|++..++
T Consensus       329 --------~g~~Ris~~~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         329 --------VGGMRASIYNAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             --------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             --------cCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence                    1239999964    6667777777665543

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.50  E-value=1.9e-13  Score=126.39  Aligned_cols=218  Identities=15%  Similarity=0.133  Sum_probs=131.1

Q ss_pred             CCCCCCcccceeeeeeeecCCCCCCCCccccCCCCchHHHHHHHHHhhcCCC-ceEEeCcHHHHHHHHHH---hcCCCCE
Q 016612           20 FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGMAALAAVTH---LLGTGEE   95 (386)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~gt~al~~~~~---~~~~g~~   95 (386)
                      ...+|.-+|.+.++......   . ..  +..........+.+.+.+..+.. ...+++||++|+.+.+.   .....++
T Consensus        63 ~~~lGh~hp~i~~ai~~~~~---~-~~--~~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~  136 (427)
T d2gsaa_          63 PAICGHAHPEVIEALKVAME---K-GT--SFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDK  136 (427)
T ss_dssp             TTTTCBTCHHHHHHHHHHHT---T-CS--CCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCE
T ss_pred             HHhccCCcHHHHHHHHHHHH---h-cC--ccccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCe
Confidence            45577777776654322111   1 11  11112335666777777776544 56788899999864333   2334567


Q ss_pred             EEecCCCCCcHHHHH---------h-hhccc------CCcEEEEeCCCCHHHHHhhhC---CCceEEEEeCCCCCCcccc
Q 016612           96 IVAGDDLYGGTDRLL---------S-RVTPK------TGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQIC  156 (386)
Q Consensus        96 Vlv~~~~~~~~~~~~---------~-~~~~~------~g~~~~~v~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~  156 (386)
                      |+.-+..|++.....         . ..-..      ...+....+..|++++++.+.   .++.+|+++......|.+.
T Consensus       137 ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~  216 (427)
T d2gsaa_         137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV  216 (427)
T ss_dssp             EEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBC
T ss_pred             EEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCcc
Confidence            887777776531100         0 00000      012344556679999998887   4788999998887778887


Q ss_pred             c----HHHHHHHHHHcCCEEEEeCCCCCC---Ccc--CCCCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHh
Q 016612          157 D----IRKIAEMAHAHGALLLVDNSIMSP---VLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (386)
Q Consensus       157 ~----l~~i~~la~~~~~~li~D~a~~~~---~~~--~~~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~  227 (386)
                      +    +++|.++|++||+++|+||++...   ...  ......+|+++.  +|.++|  |+..|.++++ +++.+.+...
T Consensus       217 ~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~--gK~lgg--G~p~~a~~~~-~~i~~~~~~~  291 (427)
T d2gsaa_         217 PDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTL--GKIIGG--GLPVGAYGGK-REIMQLVAPA  291 (427)
T ss_dssp             CCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEE--CGGGGT--TSCCEEEEEC-HHHHTTBTTT
T ss_pred             CCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhh--hhccCC--Ccceeeeeeh-HHHHHHhccc
Confidence            6    999999999999999999998532   111  112345799875  888865  4456777776 4455433221


Q ss_pred             ---hhhcCCCCChhhHHHHHhcCC
Q 016612          228 ---QNAEGSGLAPFDCWICLRGVK  248 (386)
Q Consensus       228 ---~~~~~~~~~~~~~~~~~~~~~  248 (386)
                         ......+.++...+++...++
T Consensus       292 ~~~~~~~T~~gnpla~AAala~Le  315 (427)
T d2gsaa_         292 GPMYQAGTLSGNPLAMTAGIKTLE  315 (427)
T ss_dssp             SSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCCCchhhHHHHHhhH
Confidence               111223556666666655443

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.49  E-value=4.2e-14  Score=128.35  Aligned_cols=280  Identities=10%  Similarity=-0.029  Sum_probs=159.0

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHH-HHHH-H-HHHhcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCC---
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGM-AALA-A-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt-~al~-~-~~~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---  127 (386)
                      +.+++++.++++++.+  ..+++++|+ ++.. + ...+..+++.+++....+.+..  +...++..+...+.....   
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1w23a_          49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEK--ALKEAKLLGETHIAASTKANS  126 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHTTSEEEEEEECGGGT
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhh--hHHHHHHhhhcceeecccccc
Confidence            6788999999999986  367777776 4443 3 3446778888887665544332  234556667666555432   


Q ss_pred             --CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCCCCcc-CCCCCCccEEEecccccccc
Q 016612          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (386)
Q Consensus       128 --d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-~~~~~~~di~~~S~sK~~~g  204 (386)
                        +++++...... ..   +.+.+|.||...|+++|.++|+++|+++++|.+++.|+.. +..+++.|++.++-+|+  +
T Consensus       127 ~~~~~~~~~~~~~-~~---~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~--~  200 (360)
T d1w23a_         127 YQSIPDFSEFQLN-EN---DAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLG--P  200 (360)
T ss_dssp             SCSCCCGGGCCCC-TT---EEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTS--C
T ss_pred             ccchhhhhhcccc-cc---cceeEecCCccccceeeeeccccceeeEEeeccccccccccccccccceEEeeccccc--c
Confidence              33334333332 22   3345566899999999999999999999999999988864 45556777776655554  3


Q ss_pred             CCCceEEEEEEcChhHHH---------HHHHhhhhcC-CCCChhhHHHHH------hcCCcHHHHHHHHHHHHHHHHHHH
Q 016612          205 HSDVMAGVLAVKGERLAK---------ELYFLQNAEG-SGLAPFDCWICL------RGVKTMALRVEKQQDNAQKIAEFL  268 (386)
Q Consensus       205 ~~g~~~G~i~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~l  268 (386)
                      +++  +|+++.++.....         .......... ............      ..........+....+......+.
T Consensus       201 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (360)
T d1w23a_         201 SGV--TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTI  278 (360)
T ss_dssp             TTC--EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCc--ceeeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            333  4555544221100         0001111111 111111111110      011111222222333333333333


Q ss_pred             hhCCCcceEecCCCCCCCchhhhhhccCCC-CceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCC
Q 016612          269 ASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  347 (386)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~  347 (386)
                      ........ ..             ..+..+ ..+++|.+++....+.+...+..+|+..+-|+..               
T Consensus       279 ~~~~~~~~-~~-------------~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~GI~~~~G~~~---------------  329 (360)
T d1w23a_         279 DESNGFYV-GH-------------AEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRS---------------  329 (360)
T ss_dssp             HTTTTSSE-ES-------------SCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTT---------------
T ss_pred             hhcccccc-cC-------------CChhhcceeEEEEEcCCCccHHHHHHHHHHCCCeeeeCCCc---------------
Confidence            33321100 00             011112 3478999988777888999999999987766531               


Q ss_pred             HHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          348 VEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       348 ~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                                -+.||+|+.    .|+++.+++.+++.++.+
T Consensus       330 ----------~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~~  360 (360)
T d1w23a_         330 ----------VGGCRASIYNAVPIDACIALRELMIQFKENA  360 (360)
T ss_dssp             ----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             ----------cCcEEEEeeCCCCHHHHHHHHHHHHHHHhcC
Confidence                      123999983    377888888888877653

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.46  E-value=4.4e-13  Score=125.83  Aligned_cols=160  Identities=16%  Similarity=0.147  Sum_probs=107.4

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEeCcHHHHHH-HHHHhcCCC-------CEEEecCCCCCcHHHHHhhhcccCCcEEEEe
Q 016612           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTG-------EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (386)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~gt~al~-~~~~~~~~g-------~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v  124 (386)
                      +++...++++.+++++|.+.+++++||++|.. ++..++++|       ..++.....|..+.    ......|...+..
T Consensus        73 ~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~----~~~~~~g~~~~~~  148 (465)
T d1ax4a_          73 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTA----AHVELNGCKAINI  148 (465)
T ss_dssp             SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHH----HHHHHTTCEEEEC
T ss_pred             cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhH----HHHHHcCCeeecc
Confidence            45678899999999999999999999998876 444444433       33444444333332    2233455555544


Q ss_pred             CC---------------CCHHHHHhhhC----CCceEEEEeCCCCCCccc-c---cHHHHHHHHHHcCCEEEEeCCCCCC
Q 016612          125 NT---------------CDLDEVASAIG----PWTKLVWVESPTNPRQQI-C---DIRKIAEMAHAHGALLLVDNSIMSP  181 (386)
Q Consensus       125 ~~---------------~d~~~l~~~~~----~~~~~v~~~~~~nptG~~-~---~l~~i~~la~~~~~~li~D~a~~~~  181 (386)
                      ..               .|+++++++++    +.+.+++++.++|..|.. .   ++++|.++|++||+++|+|+++..+
T Consensus       149 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~  228 (465)
T d1ax4a_         149 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE  228 (465)
T ss_dssp             BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             cccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhh
Confidence            21               28889998875    355677777777766554 3   4889999999999999999997532


Q ss_pred             Cc-------cCCC-----------CCCccEEEeccccccccCCCceEEEEEEcChh
Q 016612          182 VL-------SRPL-----------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (386)
Q Consensus       182 ~~-------~~~~-----------~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~  219 (386)
                      ..       ....           ....|++.+|.+|.++++.   +|++++++..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~  281 (465)
T d1ax4a_         229 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNE  281 (465)
T ss_dssp             HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCH
T ss_pred             hhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchH
Confidence            11       0000           1125899999999886554   6888887543

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.44  E-value=1.9e-13  Score=126.86  Aligned_cols=290  Identities=15%  Similarity=0.136  Sum_probs=157.5

Q ss_pred             chHHHHHHHHHhhc--CCCceEEeCcHHHHHHHHHH---hcCCCCEEEecCCCCCcHHHHHhhhccc----------CCc
Q 016612           55 PTRDALESLLAKLD--KADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPK----------TGV  119 (386)
Q Consensus        55 ~~~~~l~~~l~~~~--g~~~~i~~~~gt~al~~~~~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~~----------~g~  119 (386)
                      +...++.+.|.++.  +.+...+++||++|+.+.+.   .....+.|+.-...|++...........          .+.
T Consensus        83 ~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~  162 (431)
T d1zoda1          83 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGS  162 (431)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTE
T ss_pred             HHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCc
Confidence            45566777777766  44678889999999864333   2344567777777776643221111110          111


Q ss_pred             EEEEeCCC---------------CHHHHHhhh----CCCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeC
Q 016612          120 VVKRVNTC---------------DLDEVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDN  176 (386)
Q Consensus       120 ~~~~v~~~---------------d~~~l~~~~----~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~  176 (386)
                      .....+..               +.+.+...+    .+++.+|+++......|.+.+    +++|.++|++||+++|.||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DE  242 (431)
T d1zoda1         163 FAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDE  242 (431)
T ss_dssp             EEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred             eeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecc
Confidence            11111110               123332222    357899999988776677654    8999999999999999999


Q ss_pred             CCCC-CCccCC-----CCCCccEEEeccccccccCCCceEEEEEEcChhHHHHHHHhh--hhcCCCCChhhHHHHHhcCC
Q 016612          177 SIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVK  248 (386)
Q Consensus       177 a~~~-~~~~~~-----~~~~~di~~~S~sK~~~g~~g~~~G~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  248 (386)
                      ++.. +-....     ....+|+++.  +|.+++  |+..+.++++++ +........  .....+.++...+++...++
T Consensus       243 V~tG~gRtG~~~~~~~~gv~PDi~~~--gK~l~g--G~p~~av~~~~~-~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~  317 (431)
T d1zoda1         243 AQTGVGRTGTMFACQRDGVTPDILTL--SKTLGA--GLPLAAIVTSAA-IEERAHELGYLFYTTHVSDPLPAAVGLRVLD  317 (431)
T ss_dssp             TTTTTTTTSSSSTHHHHTCCCSEEEE--CHHHHT--TSSCEEEEECHH-HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCcchhcc--cccccc--ccccceeeeeec-chhhhhcccccccCCCCCCcchHHHHHHHHH
Confidence            9873 322211     2346799875  898865  334566666533 444333222  12223455555555544443


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCCCchhhhhhccCCCCceEEEEeC--------CHHhHHHHHhhcC
Q 016612          249 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTK  320 (386)
Q Consensus       249 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~  320 (386)
                      .+  ..+...++.+.+.+++.+...  .    .+..++    ...+.++.|.++.+.+.        ......++.+.+.
T Consensus       318 ~i--~~~~~~~~~~~~g~~l~~~l~--~----~~~~~~----~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~  385 (431)
T d1zoda1         318 VV--QRDGLVARANVMGDRLRRGLL--D----LMERFD----CIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECM  385 (431)
T ss_dssp             HH--HHTTHHHHHHHHHHHHHHHHH--H----HHHHCT----TEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHH
T ss_pred             Hh--hhhhhhHHHHHHHHHHhhhhh--h----hhhcCC----CeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            22  122333444433333332100  0    000000    00122566788887751        1233556666666


Q ss_pred             cceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhcC
Q 016612          321 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  384 (386)
Q Consensus       321 ~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~~  384 (386)
                      .+|+..+.      +..                 +...+.||+++.    .+++++.++.|.++|+++
T Consensus       386 ~~Gl~~~~------~~~-----------------~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         386 NLGLSMNI------VQL-----------------PGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             HTTEECCE------ECC-----------------TTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhCcccCe------eee-----------------cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            66653211      000                 012455888864    488888899999998864

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=2.1e-12  Score=117.88  Aligned_cols=158  Identities=20%  Similarity=0.200  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHhhcCCCc-eEEeCcHHHHH-HHHH-H-hcCCCCEEEecCCCCCcHHHHHhhhcccCCcEEEEeCCCCHHH
Q 016612           56 TRDALESLLAKLDKADR-ALCFTSGMAAL-AAVT-H-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE  131 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~~-~i~~~~gt~al-~~~~-~-~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~  131 (386)
                      ...++++++++++|.+. ..-...|++|. .+++ + -...++.++++...|+.+.......++..|++++.++.++...
T Consensus       109 ~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~  188 (437)
T d1wyua1         109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT  188 (437)
T ss_dssp             HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC
T ss_pred             HHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccc
Confidence            56788999999999993 33344565443 3332 2 2345678999999999888777788889999999999764433


Q ss_pred             HHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCC-CCCccCCCCCCccEEEecccc------cccc
Q 016612          132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATK------FIAG  204 (386)
Q Consensus       132 l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-~~~~~~~~~~~~di~~~S~sK------~~~g  204 (386)
                      ....+++++.+|++++|++ .|.+.++++|.+++++.|.++++|.... .+.+..|.++|+||++++ +|      .++|
T Consensus       189 ~~~~~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GG  266 (437)
T d1wyua1         189 PLPEVGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGG  266 (437)
T ss_dssp             CCCCCCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGC
T ss_pred             hhhhhccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceeccccCCCc
Confidence            3334678999999999977 7999999999999999999888876543 344556778899999998 55      4444


Q ss_pred             CCCceEEEEEEcCh
Q 016612          205 HSDVMAGVLAVKGE  218 (386)
Q Consensus       205 ~~g~~~G~i~~~~~  218 (386)
                      |.   .|++.++++
T Consensus       267 P~---~G~~a~~~~  277 (437)
T d1wyua1         267 PH---FGFLATKKA  277 (437)
T ss_dssp             SC---CEEEEECGG
T ss_pred             Cc---cccccccch
Confidence            43   589988754

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.42  E-value=1.6e-13  Score=128.00  Aligned_cols=198  Identities=16%  Similarity=0.141  Sum_probs=119.6

Q ss_pred             CCceEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEeCCCCC----CCccCCC--CC--CccEEEeccccccccC
Q 016612          138 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS----PVLSRPL--EL--GADIVMHSATKFIAGH  205 (386)
Q Consensus       138 ~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~----~~~~~~~--~~--~~di~~~S~sK~~~g~  205 (386)
                      +++.+|+++..+...|.+.+    +++|.++|++||+++|+||++..    |.+....  ..  .+|+++  ++|.+++ 
T Consensus       247 ~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~-  323 (461)
T d1ohwa_         247 KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT-  323 (461)
T ss_dssp             CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS-
T ss_pred             CccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc-
Confidence            67889999999887777753    89999999999999999999852    2222111  12  378885  5898753 


Q ss_pred             CCceEEEEEEcChhHHHHHHHhhhhcCCCCChhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhCCCcceEecCCCCCC
Q 016612          206 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  285 (386)
Q Consensus       206 ~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  285 (386)
                           |+.... ..+.. ..........+.++...+++...++.+..  +.+.++++.+.+++.+.-.  .+. ...+. 
T Consensus       324 -----g~~~~~-~~~~~-~~~~~~~~T~~g~p~~~aaa~a~l~~i~~--~~l~~~~~~~g~~l~~~l~--~l~-~~~~~-  390 (461)
T d1ohwa_         324 -----GGFFHK-EEFRP-NAPYRIFNTWLGDPSKNLLLAEVINIIKR--EDLLSNAAHAGKVLLTGLL--DLQ-ARYPQ-  390 (461)
T ss_dssp             -----EEEEEC-GGGSC-SSTTSSCCSCSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHH--HHH-HHCTT-
T ss_pred             -----cccccc-ccccc-ccccccccccccccccchhhcccchhhhh--hhHHHHHHHHHHHHHHHHH--HHH-hhCCC-
Confidence                 333333 22211 11112222335556666666655554322  2334444444443332100  000 00000 


Q ss_pred             CchhhhhhccCCCCceEEEEeCCHHhHHHHHhhcCcceeccCCCCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 016612          286 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  365 (386)
Q Consensus       286 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  365 (386)
                           +..+.++.|.++.+.+.+.....++.+.+..+|+.+...+                           ++.||+.+
T Consensus       391 -----~i~~vrG~Gl~~~ie~~~~~~~~~i~~~~~~~Gll~~~~~---------------------------~~~ir~~P  438 (461)
T d1ohwa_         391 -----FISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG---------------------------DKSIRFRP  438 (461)
T ss_dssp             -----TCEEEEEETTEEEEECSSHHHHHHHHHHHHHTTEECEEET---------------------------TTEEECCC
T ss_pred             -----ceEEeeeeeEEEEEEcCCHHHHHHHHHHHHHCCeEEeeCC---------------------------CCEEEEeC
Confidence                 0112256788999999888888899999988888654311                           23477765


Q ss_pred             ----ccCChHHHHHHHHHHHhc
Q 016612          366 ----GIEDVNDLISDLDKALRT  383 (386)
Q Consensus       366 ----~~~~~~~~i~~l~~~l~~  383 (386)
                          +.++++++++.|.++|++
T Consensus       439 pL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         439 TLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CcCCCHHHHHHHHHHHHHHHhc
Confidence                458888999999998875

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.63  E-value=5.8e-07  Score=82.45  Aligned_cols=160  Identities=19%  Similarity=0.230  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHhhcCCC--ceEEeCcHHHHHHH-HHH--hc-CCC----CEEEecCCCCCcHHHHHhhhcccCCcEEEEeC
Q 016612           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTH--LL-GTG----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (386)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~gt~al~~-~~~--~~-~~g----~~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~  125 (386)
                      ..-+.+..+++++|.|  +.-...++|+...+ +++  .. +.|    ..+++..+.+.....   ......+..++.++
T Consensus       107 alfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  183 (471)
T d1wyub1         107 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNP---ATASMAGYQVREIP  183 (471)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHH---HHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCccccccee---eeeecccceeeccc
Confidence            5677889999999999  23333333422222 222  21 121    234455555555442   33344556666665


Q ss_pred             CC-----CHHHHHhhhCCCceEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEeCCCCC--CCccCCCCCCccEEEecc
Q 016612          126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS--PVLSRPLELGADIVMHSA  198 (386)
Q Consensus       126 ~~-----d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~--~~~~~~~~~~~di~~~S~  198 (386)
                      ..     +.+.+.....+++.++++.+|++..+.....+.+.+++++.+..+++|.+...  ..+..+-..+.|+++...
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~  263 (471)
T d1wyub1         184 SGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNL  263 (471)
T ss_dssp             BCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCT
T ss_pred             ccccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCccccccccccc
Confidence            42     78888888888999999999999654445689999999999998888876432  223334456788888788


Q ss_pred             ccccccC---CCceEEEEEEcCh
Q 016612          199 TKFIAGH---SDVMAGVLAVKGE  218 (386)
Q Consensus       199 sK~~~g~---~g~~~G~i~~~~~  218 (386)
                      ++.++.|   +|.-.|++.++++
T Consensus       264 ~q~~G~P~~~GGP~~G~~a~~~~  286 (471)
T d1wyub1         264 HKTFTVPHGGGGPGSGPVGVKAH  286 (471)
T ss_dssp             TTTTCCCCTTSCCCCCCEEECGG
T ss_pred             ccccccccccccccccceeehhh
Confidence            8865322   2223688988755