Citrus Sinensis ID: 016631

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY
ccccccccccHHHHHHHHHHcccccccccccccEEEEEEEccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccccEEEEEEEcccccccccHHHHHHHHHHcccccccccccccccHHHHHHHcccccEEEEEcccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHccccc
HHcccEccccccHHHHHHHHHccEEEEEEccccEEEEEEEEHHHHHHHHHHHHHHHHcEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHccccccHHHHHHccHHHHHHHHHHHccHHHEEEEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHcEEEcccccccccccHHHHHHHHHccccEEEEEEEEEccEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHccccccc
mifkgtekrTARDLEEEIENMGGhlnaytsreQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHatafqytplgrtilgpaqniKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLsadpttasqlvanepaiftgsevriidddipLAQFAVAFagaswtdpdSIALMVMQAMLGswnknsvggkhmgseLAQRVGINEIAESMMAFntnykdtglfgvyavakpdclDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLlhidgtspvAEDIGRQLLtygrripfAELFARIDsvdastvkrVANRFIYDRDIAIaamgpiqglpdynwfrrRTYWNRY
mifkgtekrtardLEEEIENMgghlnaytsREQTTYYAKVLDKDVNNALDILADilqnstfdqariTRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLsadpttasqlvanepAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSslllhidgtspVAEDIGRQLLTYGRRIPFAELFaridsvdastvkrvanRFIYDRDIAIaamgpiqglpdynwfrRRTYWNRY
MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRemeevegqteeVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAvkheevveqvkkLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY
************************LNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWN**
MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTK******************FTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNS****HMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY
*********TARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY
**FKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY
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MIFKGTEKRTxxxxxxxxxxxxxxxxxxxxxEQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q42290531 Probable mitochondrial-pr yes no 1.0 0.726 0.854 0.0
Q5REK3489 Mitochondrial-processing yes no 0.992 0.783 0.506 1e-115
O75439489 Mitochondrial-processing yes no 0.992 0.783 0.506 1e-115
Q03346489 Mitochondrial-processing yes no 0.987 0.779 0.516 1e-114
Q3SZ71490 Mitochondrial-processing yes no 0.987 0.777 0.506 1e-114
Q9CXT8489 Mitochondrial-processing yes no 0.992 0.783 0.509 1e-113
P11913476 Mitochondrial-processing N/A no 0.979 0.794 0.528 1e-108
Q00302465 Mitochondrial-processing N/A no 0.981 0.815 0.529 1e-106
Q4W6B5469 Mitochondrial-processing yes no 0.997 0.820 0.474 1e-102
Q9Y8B5466 Mitochondrial-processing N/A no 0.979 0.811 0.480 1e-101
>sp|Q42290|MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2 Back     alignment and function desciption
 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/386 (85%), Positives = 362/386 (93%)

Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           MIFKGT++RT R LEEEIE++GGHLNAYTSREQTTYYAKVLD +VN ALD+LADILQNS 
Sbjct: 146 MIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSK 205

Query: 61  FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
           F++ RI RERDVILREM+EVEGQT+EV+ DHLHATAFQYTPLGRTILGPAQN+K+IT+E 
Sbjct: 206 FEEQRINRERDVILREMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITRED 265

Query: 121 LQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180
           LQNYI THYTA RMVIAA+GAVKHEEVVEQVKKLFTKLS+DPTT SQLVANEPA FTGSE
Sbjct: 266 LQNYIKTHYTASRMVIAAAGAVKHEEVVEQVKKLFTKLSSDPTTTSQLVANEPASFTGSE 325

Query: 181 VRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240
           VR+IDDD+PLAQFAVAF GASWTDPDS+ALMVMQ MLGSWNKN  GGKH+GS+L QRV I
Sbjct: 326 VRMIDDDLPLAQFAVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAI 385

Query: 241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ 300
           NEIAES+MAFNTNYKDTGLFGVYAVAK DCLDDL+YAIMYE TKLAYRVS+ADVTRARNQ
Sbjct: 386 NEIAESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQ 445

Query: 301 LKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDI 360
           LKSSLLLH+DGTSP+AEDIGRQLLTYGRRIP AELFARID+VDASTVKRVAN++IYD+DI
Sbjct: 446 LKSSLLLHMDGTSPIAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDKDI 505

Query: 361 AIAAMGPIQGLPDYNWFRRRTYWNRY 386
           AI+A+GPIQ LPDYN FRRRTYWNRY
Sbjct: 506 AISAIGPIQDLPDYNKFRRRTYWNRY 531
Cleaves presequences (transit peptides) from mitochondrial protein precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 6EC: 4
>sp|Q5REK3|MPPB_PONAB Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|O75439|MPPB_HUMAN Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2 Back     alignment and function description
>sp|Q03346|MPPB_RAT Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3 Back     alignment and function description
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1 Back     alignment and function description
>sp|P11913|MPPB_NEUCR Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pep PE=1 SV=1 Back     alignment and function description
>sp|Q00302|MPPB_BLAEM Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1 Back     alignment and function description
>sp|Q4W6B5|MPPB_DICDI Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1 Back     alignment and function description
>sp|Q9Y8B5|MPPB_LENED Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
12802327 528 mitochondrial processing peptidase beta 1.0 0.731 0.924 0.0
449438845 528 PREDICTED: probable mitochondrial-proces 1.0 0.731 0.924 0.0
147765656 523 hypothetical protein VITISV_006460 [Viti 1.0 0.738 0.919 0.0
225452974 523 PREDICTED: probable mitochondrial-proces 1.0 0.738 0.919 0.0
356558971 523 PREDICTED: probable mitochondrial-proces 1.0 0.738 0.904 0.0
356527314 528 PREDICTED: probable mitochondrial-proces 1.0 0.731 0.898 0.0
356567781 527 PREDICTED: probable mitochondrial-proces 1.0 0.732 0.888 0.0
13959067 527 mitochondrial processing peptidase [Avic 1.0 0.732 0.875 0.0
224141065 527 predicted protein [Populus trichocarpa] 1.0 0.732 0.880 0.0
15232845 531 mitochondrial processing peptidase [Arab 1.0 0.726 0.854 0.0
>gi|12802327|gb|AAK07827.1|AF297643_1 mitochondrial processing peptidase beta subunit [Cucumis melo] Back     alignment and taxonomy information
 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/386 (92%), Positives = 375/386 (97%)

Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           MIFKGTEKR+AR LEEEIENMGGHLNAYTSREQTTYYAKVLDKDV  ALDILADILQNS 
Sbjct: 143 MIFKGTEKRSARQLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVPKALDILADILQNSK 202

Query: 61  FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
           FD+ RI+RERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNI+TITK+H
Sbjct: 203 FDEHRISRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIRTITKDH 262

Query: 121 LQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180
           LQ+YI THYTAPRMVIAASGAVKHE+ VEQVKKLFTKLSA+PTTA+QLVA EPAIFTGSE
Sbjct: 263 LQSYIQTHYTAPRMVIAASGAVKHEDFVEQVKKLFTKLSAEPTTAAQLVAKEPAIFTGSE 322

Query: 181 VRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240
           VRI+DDD+PLAQFA+AF GASWTDPDSIALMVMQAMLGSWNK++ GGKHMGSELAQRV I
Sbjct: 323 VRIVDDDVPLAQFAIAFNGASWTDPDSIALMVMQAMLGSWNKSAGGGKHMGSELAQRVAI 382

Query: 241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ 300
           NE+AESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ
Sbjct: 383 NEVAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ 442

Query: 301 LKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDI 360
           LKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARID+VDAST+KRVANRFIYDRDI
Sbjct: 443 LKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDAVDASTIKRVANRFIYDRDI 502

Query: 361 AIAAMGPIQGLPDYNWFRRRTYWNRY 386
           AIAA+GPIQGLPDYNWFRRRTYWNRY
Sbjct: 503 AIAALGPIQGLPDYNWFRRRTYWNRY 528

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449438845|ref|XP_004137198.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147765656|emb|CAN71501.1| hypothetical protein VITISV_006460 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452974|ref|XP_002284370.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558971|ref|XP_003547775.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|356527314|ref|XP_003532256.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|356567781|ref|XP_003552094.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|13959067|gb|AAK51086.1|AF363285_1 mitochondrial processing peptidase [Avicennia marina] Back     alignment and taxonomy information
>gi|224141065|ref|XP_002323895.1| predicted protein [Populus trichocarpa] gi|222866897|gb|EEF04028.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15232845|ref|NP_186858.1| mitochondrial processing peptidase [Arabidopsis thaliana] gi|85700445|sp|Q42290.2|MPPB_ARATH RecName: Full=Probable mitochondrial-processing peptidase subunit beta; AltName: Full=Beta-MPP; Flags: Precursor gi|6513923|gb|AAF14827.1|AC011664_9 putative mitochondrial processing peptidase [Arabidopsis thaliana] gi|22022518|gb|AAM83217.1| AT3g02090/F1C9_12 [Arabidopsis thaliana] gi|23397047|gb|AAN31809.1| putative mitochondrial processing peptidase [Arabidopsis thaliana] gi|23463071|gb|AAN33205.1| At3g02090/F1C9_12 [Arabidopsis thaliana] gi|25054848|gb|AAN71914.1| putative mitochondrial processing peptidase [Arabidopsis thaliana] gi|332640240|gb|AEE73761.1| mitochondrial processing peptidase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
UNIPROTKB|F1PUK2513 PMPCB "Uncharacterized protein 0.989 0.744 0.487 4.7e-96
UNIPROTKB|F1SB55489 PMPCB "Uncharacterized protein 0.989 0.781 0.484 9.7e-96
UNIPROTKB|I3LHS1489 LOC100624058 "Uncharacterized 0.989 0.781 0.484 9.7e-96
FB|FBgn0038271470 CG3731 [Drosophila melanogaste 0.987 0.810 0.493 1.4e-94
UNIPROTKB|Q3SZ71490 PMPCB "Mitochondrial-processin 0.987 0.777 0.477 6.1e-94
UNIPROTKB|O75439489 PMPCB "Mitochondrial-processin 0.992 0.783 0.480 6.1e-94
RGD|621297489 Pmpcb "peptidase (mitochondria 0.989 0.781 0.489 6.1e-94
ZFIN|ZDB-GENE-050220-10470 pmpcb "peptidase (mitochondria 0.981 0.806 0.496 1e-93
UNIPROTKB|E1B941490 PMPCB "Mitochondrial-processin 0.987 0.777 0.475 5.5e-93
MGI|MGI:1920328489 Pmpcb "peptidase (mitochondria 0.992 0.783 0.480 5.5e-93
UNIPROTKB|F1PUK2 PMPCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 188/386 (48%), Positives = 256/386 (66%)

Query:     1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
             M FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST
Sbjct:   130 MAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNST 189

Query:    61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
               +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I ++ 
Sbjct:   190 LGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKD 249

Query:   121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLF-TKLSADPTTASQLVANEPAIFTGS 179
             L +YI THY  PR+V+AA+G              F   LS   T   ++ A  P  FTGS
Sbjct:   250 LVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLS---THKGEIPALPPCKFTGS 306

Query:   180 EVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG 239
             E+R+ DD +PLA  AVA     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ   
Sbjct:   307 EIRVRDDKMPLAHLAVAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTC 366

Query:   240 INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARN 299
                +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E  +L   ++E++V RA+N
Sbjct:   367 HGNLCHSFQSFNTSYTDTGLWGIYMVCEPATIADMLHVVQKEWMRLCTSITESEVARAKN 426

Query:   300 QLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRD 359
              LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A T++ V  ++IYD+ 
Sbjct:   427 LLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIQEVCTKYIYDKS 486

Query:   360 IAIAAMGPIQGLPDYNWFRRRTYWNR 385
              A+AA+GPI+ LPD+N  RR   W R
Sbjct:   487 PALAAVGPIEQLPDFNQIRRNMCWLR 512
GO:0046872 "metal ion binding" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA
UNIPROTKB|F1SB55 PMPCB "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LHS1 LOC100624058 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0038271 CG3731 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZ71 PMPCB "Mitochondrial-processing peptidase subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O75439 PMPCB "Mitochondrial-processing peptidase subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621297 Pmpcb "peptidase (mitochondrial processing) beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050220-10 pmpcb "peptidase (mitochondrial processing) beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1B941 PMPCB "Mitochondrial-processing peptidase subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1920328 Pmpcb "peptidase (mitochondrial processing) beta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1RJ61Y522_RICBR3, ., 4, ., 2, 4, ., -0.30240.91450.8567yesno
Q92IX7Y293_RICCN3, ., 4, ., 2, 4, ., -0.31030.91450.8567yesno
Q3SZ71MPPB_BOVIN3, ., 4, ., 2, 4, ., 6, 40.50650.98700.7775yesno
Q42290MPPB_ARATH3, ., 4, ., 2, 4, ., 6, 40.85491.00.7269yesno
Q5REK3MPPB_PONAB3, ., 4, ., 2, 4, ., 6, 40.50640.99220.7832yesno
Q4UML9Y338_RICFE3, ., 4, ., 2, 4, ., -0.30790.91450.8567yesno
Q4W6B5MPPB_DICDI3, ., 4, ., 2, 4, ., 6, 40.47400.99740.8208yesno
O75439MPPB_HUMAN3, ., 4, ., 2, 4, ., 6, 40.50640.99220.7832yesno
Q9CXT8MPPB_MOUSE3, ., 4, ., 2, 4, ., 6, 40.50900.99220.7832yesno
Q03346MPPB_RAT3, ., 4, ., 2, 4, ., 6, 40.51670.98700.7791yesno
Q9P7X1MPPB_SCHPO3, ., 4, ., 2, 4, ., 6, 40.46540.98960.8358yesno
Q00302MPPB_BLAEM3, ., 4, ., 2, 4, ., 6, 40.52980.98180.8150N/Ano
P10507MPPB_YEAST3, ., 4, ., 2, 4, ., 6, 40.39170.97660.8160yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 1e-79
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 9e-42
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 2e-40
COG1025 937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 1e-07
TIGR02110 696 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis 0.002
COG1026978 COG1026, COG1026, Predicted Zn-dependent peptidase 0.002
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  251 bits (642), Expect = 1e-79
 Identities = 122/383 (31%), Positives = 189/383 (49%), Gaps = 18/383 (4%)

Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           M FKGT    + +L E  E +GG LNA+TS + T YY  VL  +++ ALD+LADIL N T
Sbjct: 66  MAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPT 125

Query: 61  FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
           FD+  + RE+ VIL E+   +   +++ F+ L    +   PLGR ILG  ++I+ IT+E 
Sbjct: 126 FDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITRED 185

Query: 121 LQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180
           L+++    Y    MV+   G V  EEVVE ++K F  L          +  EP +     
Sbjct: 186 LKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGA--APPPKIPPEPPLGPERV 243

Query: 181 VRI---IDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQR 237
           VR+      D+  A  A+ + G  +  PD  A +++         N + G    S L Q 
Sbjct: 244 VRVNDPEQPDLEQAWLALGYPGPDYDSPDDYAALLLL--------NGLLGGGFSSRLFQE 295

Query: 238 VGINE-IAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLA--YAIMYETTK--LAYRVSEA 292
           +     +A S+ +F+    D+GLF +YA   P+  +  A     + +  K  L    +E 
Sbjct: 296 LREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEE 355

Query: 293 DVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAN 352
           ++  A+  L   LLL +D  S +AE +G+ LL  G  I   EL  RI++V    V  VA 
Sbjct: 356 ELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAK 415

Query: 353 RFIYDRDIAIAAMGPIQGLPDYN 375
           + +   ++ I  +GP + L D  
Sbjct: 416 KLLAPENLTIVVLGPEKALKDLR 438

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
PRK15101 961 protease3; Provisional 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
PRK15101961 protease3; Provisional 99.98
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.97
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.97
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.96
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 99.95
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.92
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.92
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.92
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.87
PTZ004321119 falcilysin; Provisional 99.86
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.83
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 99.8
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 99.79
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.71
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 99.63
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 98.57
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 98.48
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 97.42
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 97.16
KOG0960 467 consensus Mitochondrial processing peptidase, beta 96.87
KOG2067472 consensus Mitochondrial processing peptidase, alph 96.48
KOG2583 429 consensus Ubiquinol cytochrome c reductase, subuni 91.57
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 90.23
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5e-60  Score=395.46  Aligned_cols=385  Identities=58%  Similarity=0.939  Sum_probs=368.4

Q ss_pred             CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631            1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV   80 (386)
Q Consensus         1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~   80 (386)
                      |+|+||++++...++..++..|+++|++|+++.|.|++++++++++.++++|.|++++.++.+..|++||++++.|++..
T Consensus        82 laFKGT~~Rs~~alElEieniGahLNAytSReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqev  161 (467)
T KOG0960|consen   82 LAFKGTKNRSQAALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEV  161 (467)
T ss_pred             HHhcCCCcchhHHHHHHHHHHHHHhcccccccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631           81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA  160 (386)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~  160 (386)
                      +.+..+..++.++...|.++|+++.+.|+.+.|++|+.+||++|.++||.+++|++..+|.++++++.++++++|+.++.
T Consensus       162 d~~~~eVVfdhLHatafQgtPL~~tilGp~enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~  241 (467)
T KOG0960|consen  162 DKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSK  241 (467)
T ss_pred             HhhhhHHHHHHHHHHHhcCCcccccccChhhhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcc
Confidence            98899999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 016631          161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI  240 (386)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre  240 (386)
                      ...+..+. ..+++.|.+.+++...++.|.+++.+++-+.+|.+||+.++.+++.++|+|..+.|.|....|+|-+.+-+
T Consensus       242 ~~~~~~~~-~~~~~~FtgsEvR~rdd~lP~a~~AiAVEG~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~  320 (467)
T KOG0960|consen  242 LQTGDKVP-LVPPARFTGSEVRVRDDDLPLAHIAIAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQ  320 (467)
T ss_pred             cccCcCCC-CCCCccccCceeeecCCCCchhheeeeEecCCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHH
Confidence            44443322 22577799999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccceeeeeecccccCCcceeEEEeee-CcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHH
Q 016631          241 NEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDI  319 (386)
Q Consensus       241 ~gl~y~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~  319 (386)
                      ..++-++.++...|.++|++++|+.+ ++..++.++..+..++.+|..-+|+.|+++||+++..++....+.....++.+
T Consensus       321 ~~l~~sfqsFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~edi  400 (467)
T KOG0960|consen  321 DQLCHSFQSFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDI  400 (467)
T ss_pred             HHHHHHHhhhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            88999999999999999999999999 77999999999999999998799999999999999999999999999999999


Q ss_pred             HHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhhhccC
Q 016631          320 GRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY  386 (386)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~~~~~  386 (386)
                      +++.+.+|...+..++...|++||.++|+++|.+|+..+.++++.+||...+|+++.++..|+|+||
T Consensus       401 GrqlL~~Grri~l~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie~lpdy~~irs~m~w~R~  467 (467)
T KOG0960|consen  401 GRQLLTYGRRIPLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIEGLPDYNRIRSGMSWMRW  467 (467)
T ss_pred             HHHHhhcCCcCChHHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccccCchHHHHhccchhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 4e-93
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 5e-93
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 7e-93
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 6e-92
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 3e-91
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 4e-71
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 4e-71
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 4e-35
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 7e-32
1kb9_A431 Yeast Cytochrome Bc1 Complex Length = 431 7e-32
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 2e-30
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 8e-25
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 8e-21
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 9e-21
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 9e-21
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 6e-20
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 1e-19
3eoq_A406 The Crystal Structure Of Putative Zinc Protease Bet 7e-10
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 1e-05
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 1e-05
3amj_B424 The Crystal Structure Of The Heterodimer Of M16b Pe 5e-05
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure 
Iteration: 1

 Score =  338 bits (866), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 162/392 (41%), Positives = 240/392 (61%), Gaps = 13/392 (3%)
Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           + FKGT+ R    LE+E+E+MG HLNAY++RE T YY K L KD+  A+++LADI+QN +
Sbjct: 96  LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS 155
Query: 61  FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
            + ++I +ERDVIL+           V+F++LHATAFQ TPL +++ GP++N++ +++  
Sbjct: 156 LEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRAD 215
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLS------ADPTTASQLVANEPA 174
           L  Y+  HY APRMV+AA+G              F+ LS      A PT +       P 
Sbjct: 216 LTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLS-------PC 268
Query: 175 IFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSEL 234
            FTGS++   +D +PLA  A+A  G  W  PD++AL V  A++G ++    GG H+ S L
Sbjct: 269 RFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPL 328
Query: 235 AQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADV 294
           A     N++ +S   FN  Y DTGL G + V     +DD+ + +  +  +L    +E++V
Sbjct: 329 ASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEV 388
Query: 295 TRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRF 354
            R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  V+ V +++
Sbjct: 389 LRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKY 448
Query: 355 IYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 386
            YD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct: 449 FYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF 480
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta- Subunit From Thermus Thermophilus Hb8 Length = 406 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 424 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 0.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 0.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 0.0
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-170
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-170
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-165
3eoq_A406 Putative zinc protease; two similar domains of bet 1e-156
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-106
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 1e-75
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 3e-71
3gwb_A434 Peptidase M16 inactive domain family protein; pept 1e-66
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 6e-54
3go9_A492 Insulinase family protease; IDP00573, structural g 2e-39
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 6e-24
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 1e-23
3ih6_A197 Putative zinc protease; bordetella pertussis toham 7e-20
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 6e-17
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 6e-12
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
 Score =  539 bits (1390), Expect = 0.0
 Identities = 163/386 (42%), Positives = 252/386 (65%), Gaps = 1/386 (0%)

Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           + FKGT+ R    LE+E+E+MG HLNAY++RE T YY K L KD+  A+++LADI+QN +
Sbjct: 62  LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS 121

Query: 61  FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
            + ++I +ERDVIL+E++E +    +V+F++LHATAFQ TPL +++ GP++N++ +++  
Sbjct: 122 LEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRAD 181

Query: 121 LQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180
           L  Y+  HY APRMV+AA+G ++H ++++  +K F+ LS        +    P  FTGS+
Sbjct: 182 LTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDE-DAVPTLSPCRFTGSQ 240

Query: 181 VRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240
           +   +D +PLA  A+A  G  W  PD++AL V  A++G ++    GG H+ S LA     
Sbjct: 241 ICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAAT 300

Query: 241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ 300
           N++ +S   FN  Y DTGL G + V     +DD+ + +  +  +L    +E++V R +N 
Sbjct: 301 NKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNL 360

Query: 301 LKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDI 360
           L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  V+ V +++ YD+  
Sbjct: 361 LRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCP 420

Query: 361 AIAAMGPIQGLPDYNWFRRRTYWNRY 386
           A+A  GPI+ LPDYN  R   +W R+
Sbjct: 421 AVAGFGPIEQLPDYNRIRSGMFWLRF 446
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 99.97
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.97
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.94
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 98.69
3eoq_A 406 Putative zinc protease; two similar domains of bet 98.64
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 98.6
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.6
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 98.57
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 98.51
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 98.51
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 98.5
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 98.4
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 98.33
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 98.33
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 98.28
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.22
3go9_A 492 Insulinase family protease; IDP00573, structural g 97.43
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
Probab=100.00  E-value=2.1e-56  Score=415.74  Aligned_cols=385  Identities=42%  Similarity=0.774  Sum_probs=340.9

Q ss_pred             CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631            1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV   80 (386)
Q Consensus         1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~   80 (386)
                      |+|+||+++|..++.+.++.+|+++|++|+.++|.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++..
T Consensus        62 mlf~GT~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~  141 (446)
T 1pp9_A           62 LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQEN  141 (446)
T ss_dssp             HTTSCBSSSTTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCHHHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631           81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA  160 (386)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~  160 (386)
                      .++|...+.+.+...+|+++||+++.+|+.+.|++++.++|++||++||.|+|++++|+||++++++.++++++|+.|+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~  221 (446)
T 1pp9_A          142 DTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSG  221 (446)
T ss_dssp             TTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCS
T ss_pred             hcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 016631          161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI  240 (386)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre  240 (386)
                      ...+..+..+ ..+...+..+.+..++.+++++.++|+.+++++++.+++.|++.+||++....|+|++++|+||+.+|+
T Consensus       222 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~  300 (446)
T 1pp9_A          222 TYDEDAVPTL-SPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAAT  300 (446)
T ss_dssp             CCCSSCCCCC-CCCCCCCEEEEEEETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHH
T ss_pred             CCCCCccccC-CCCCCCCceEEEecCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHh
Confidence            5443221110 122222333333455678899999999998888999999999999986544344445689999999999


Q ss_pred             ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHH
Q 016631          241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIG  320 (386)
Q Consensus       241 ~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~  320 (386)
                      +|++|+++++...+.+.|.|.+++.++|++..++++.+.++++++..+++++||+++|..++.++....+++..++..++
T Consensus       301 ~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~  380 (446)
T 1pp9_A          301 NKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIG  380 (446)
T ss_dssp             HTCCSEEEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHH
T ss_pred             cCCeEEEEEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            89999998877666778999999999999999999999999999876899999999999999999999899999998887


Q ss_pred             HHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhhhccC
Q 016631          321 RQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY  386 (386)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~~~~~  386 (386)
                      ..++..|.+.+++++.+.|.+||++||++++++++.+++.+++++||..++|.++++...+.|+||
T Consensus       381 ~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  446 (446)
T 1pp9_A          381 RSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF  446 (446)
T ss_dssp             HHHHHTSSCCCHHHHHHHHHTCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTC----
T ss_pred             HHHHHcCCCCCHHHHHHHHHcCCHHHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhHHhhcC
Confidence            776567877778888999999999999999999999888999999999999999999999999886
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 386
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 2e-60
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1e-51
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 3e-49
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 2e-36
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 9e-36
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 5e-24
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 6e-22
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 2e-19
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 3e-19
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 1e-16
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 3e-16
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 9e-16
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 7e-15
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 5e-14
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 2e-12
d2fgea2196 d.185.1.1 (A:798-993) Presequence protease 1, PREP 4e-07
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  192 bits (489), Expect = 2e-60
 Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 3/218 (1%)

Query: 172 EPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMG 231
           + A F GSEVR+ DD +P A  ++A  G     P+     +   + GS+N      +  G
Sbjct: 1   KKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQG 60

Query: 232 SELAQRVGINEIAESMMAFNTNYKDTGLFGVYA-VAKPDCLDDLAYAIMYETTKLAYRVS 290
            +L   +   ++ ++   F+ +YKD+GL+G          +DDL +  + +  +L   V+
Sbjct: 61  IKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVT 120

Query: 291 EADVTRARNQLKSSLLLHIDGTSPV--AEDIGRQLLTYGRRIPFAELFARIDSVDASTVK 348
           + +V RA++ LK  L    +  +PV  A  +G ++L  G ++   E F +ID++    VK
Sbjct: 121 DTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVK 180

Query: 349 RVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 386
             A + ++D+DIAIA  G I+GL DY   R      R+
Sbjct: 181 AWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMSMMRW 218
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 100.0
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.97
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.97
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 99.96
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.96
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.96
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.96
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.96
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.95
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.94
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.94
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.93
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.93
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.85
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.69
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.67
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 98.98
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.98
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 98.85
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.85
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 98.76
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 98.74
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.72
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 98.7
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.67
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.6
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.54
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 98.53
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.53
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.51
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.4
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.27
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.04
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 97.77
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.41
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.31
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 96.23
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) beta chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-32  Score=224.99  Aligned_cols=211  Identities=30%  Similarity=0.581  Sum_probs=195.2

Q ss_pred             CCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc-ccceeeeeec
Q 016631          172 EPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NEIAESMMAF  250 (386)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre-~gl~y~~~~~  250 (386)
                      +.|.+.++...+...+.+++++.++|++++++++|++++.|++.+||++..+.|+|++++|+|++.+|+ .|++|+++++
T Consensus         2 p~p~~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~d~~~l~v~~~iLG~~~~~~~~g~g~~SrL~~~lre~~gl~y~v~s~   81 (217)
T d1hr6b2           2 PLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSF   81 (217)
T ss_dssp             SCCCCCCEEEEEECTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEE
T ss_pred             CCCcccCCeeEEecCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCccccCcCCCccCHHHHHHHHhcCCCceeecc
Confidence            456677777778888889999999999999999999999999999998877778888999999999997 5999999999


Q ss_pred             ccccCCcceeEEEeeeCc--ccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhC
Q 016631          251 NTNYKDTGLFGVYAVAKP--DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYG  327 (386)
Q Consensus       251 ~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (386)
                      +..+.+.|.|.+++.+++  .++.++++.+.++|.+++. ++|++||+++|+.++.++....+++..++..++++.+..|
T Consensus        82 ~~~~~d~Glf~i~~~t~~~~~~~~~~~~~i~~ei~~l~~~~it~~eL~~aK~~l~~~~~~~~es~~~~a~~l~~~~l~~~  161 (217)
T d1hr6b2          82 STSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTG  161 (217)
T ss_dssp             EEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHS
T ss_pred             cccccccccceeeeecccchHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            988999999999988765  5799999999999999998 9999999999999999999999999999999988888888


Q ss_pred             CccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhh
Q 016631          328 RRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTY  382 (386)
Q Consensus       328 ~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~  382 (386)
                      .+.+++++.+.|++||.+||++++++||.+++++++++||.+++|++.++++.|.
T Consensus       162 ~~~~~~e~~~~i~~VT~edv~~~a~kyl~~~~~tv~~vG~~~~~p~~~~i~~~l~  216 (217)
T d1hr6b2         162 KRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN  216 (217)
T ss_dssp             SCCCHHHHHHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCHHHHHHHHHHHcCCCCCEEEEEcchhhCCCHHHHHHHhc
Confidence            8888999999999999999999999999999999999999999999999999875
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure