Citrus Sinensis ID: 016638

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQKLC
Secondary Structure (PSIPRED)
cccccccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccEEcccHHHcccHHHcccccccccccccccccccEEEccccHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccHHcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
msllytpnfkypegdlrknqefmdssahydqqndqlsdssltryrsapssFLESLVngnsgggncedyrcfrpsspeiDNFLAKymlpcngsgdsgshasqEFGVkamkqeepepiteqneysngssqmvyqnlpvhsvgndisVNVGNAMDNSYGVASSMALENSMQErmatgngsnltrqnsspaglfsnlgvdngfagmrnggcfracngtnleastSASRLinrvnlspgdpwddasfsgvkrardstcnmsfgldayetqngnsgnqstRLVHHLSLPKTSAEMAAVEKFLHfqgsvpckirakrgcathprsIAERVRRTRISERMRKLQDlfpnmdkqtNTAEMLDLAVEHIKDLQKQVKLLTdnkakcmcpnkqklc
Flexible Loop (DISEMBL)
msllytpnfkypegdlRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINrvnlspgdpwddaSFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHfqgsvpckirakrgcathprsiaervrrtrISERMrklqdlfpnmdkQTNTAEMLDLAVEHIKDLQKQVKLLtdnkakcmcpnkqklc
Low Complexity Region (SEG)
MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQKLC
Disordered region (IsUnstruct)
***************************************************************NCEDYRCFRPSSPEIDNFLAKYMLPC*******************************************NLPVHSVGNDISVNV*****************************************LFSNLGVDNGFAGMRNGGCFRACNGTNLE*******LI*************************************************************EMAAVEKFLHFQGSVPCKIRAKRGCATH***********************************MLDLAVEHIKDLQKQVKLLTD**************
Disordered Region (DISOPRED)
********************************************RSAPSSFLESLVNGNSG**************************************************************************************************************************************************************************************************************************************************************************ISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKA**MCPNKQKLC
Disordered Region (DISEMBL)
MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNG********SQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQKLC
Disordered Region (DISPRO)
*SLLYTPNFKYPEGDLRKNQEFMDSSA*Y******LSDSSLTRYRSAPSSFLESLVNGN**********************************************************************************************************************************FSNLGVDNGFAGMRNG***********************************************************************************MAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMxxxxxxxxxxxxxxxxxxxxxKAKCMCPNKQKLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
Q66GR3	359	Transcription factor bHLH	yes	no	0.831	0.891	0.385	1e-56
Q9C690	379	Transcription factor bHLH	no	no	0.849	0.862	0.387	4e-56
Q8H102	362	Transcription factor bHLH	no	no	0.789	0.839	0.356	8e-37
Q9C8P8	259	Transcription factor bHLH	no	no	0.511	0.760	0.384	5e-32
Q9ZW81	297	Transcription factor bHLH	no	no	0.303	0.393	0.541	5e-28
Q9M0R0	262	Transcription factor bHLH	no	no	0.223	0.328	0.639	2e-27
Q9ZUG9	350	Transcription factor bHLH	no	no	0.171	0.188	0.582	1e-14
Q9LSQ3	297	Transcription factor bHLH	no	no	0.168	0.218	0.560	3e-14
Q8S3D5	310	Transcription factor bHLH	no	no	0.168	0.209	0.575	5e-14
Q8GY61	335	Transcription factor bHLH	no	no	0.168	0.194	0.538	7e-13

>sp|Q66GR3|BH130_ARATH Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1

 Score =  220 bits (561), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 153/397 (38%), Positives = 208/397 (52%), Gaps = 77/397 (19%)

Query: 23  MDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFL 82
           MDS+ H    N   + S L R+RSAPSS L + V+ +  G +              D  L
Sbjct: 1   MDSNNHLYDPNP--TGSGLLRFRSAPSSVLAAFVDDDKIGFDS-------------DRLL 45

Query: 83  AKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMV---------YQN 133
           ++++     +GD GS           K E+  P++  N   + ++ +          +  
Sbjct: 46  SRFVTSNGVNGDLGSP----------KFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLG 95

Query: 134 LPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNL 193
           LP H             + NS G+   + + N   + +     SNL RQ+SSPAG+F+NL
Sbjct: 96  LPPHYPRQ------SKGIMNSVGLDQFLGINNHHTKPVE----SNLLRQSSSPAGMFTNL 145

Query: 194 GVDNGFAGMRN--------------GGCFRACNGTNLEAS-----TSASRLINRVNLSPG 234
              NG+  MRN               G  R C+ ++   S     +    +    N  P 
Sbjct: 146 SDQNGYGSMRNLMNYEEDEESPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPETNF-PY 204

Query: 235 DPWDDAS-----FSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPK---TS 286
             W+D S      S +KR  +    +  G      QNG SGN+   L HHLSLPK   T+
Sbjct: 205 SHWNDPSSFIDNLSSLKREAEDDGKLFLG-----AQNGESGNRMQLLSHHLSLPKSSSTA 259

Query: 287 AEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQT 346
           ++M +V+K+L  Q SVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQT
Sbjct: 260 SDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQT 319

Query: 347 NTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 383
           NT++MLDLAV++IKDLQ+Q K+L DN+A C C NK+K
Sbjct: 320 NTSDMLDLAVDYIKDLQRQYKILNDNRANCKCMNKEK 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C690|BH122_ARATH Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1

 Score =  219 bits (557), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 212/387 (54%), Gaps = 60/387 (15%)

Query: 29  YDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLP 88
           +D Q+ +  +S L RY+SAPSS+  S       G + E++   RP+SPE +  L+ ++  
Sbjct: 13  HDHQHQRPRNSGLIRYQSAPSSYFSSF------GESIEEF-LDRPTSPETERILSGFLQT 65

Query: 89  CNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVG 148
            + S +  S     F     +++ PE  TE  +     +        V S   +ISVN  
Sbjct: 66  TDTSDNVDSFLHHTFNSDGTEKKPPEVKTEDEDAEIPVTATATAMEVVVSGDGEISVNP- 124

Query: 149 NAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAG-MRNGGC 207
              + S G  +S++     +E+      +NL R NSSPAGLFS++ V+  +A  M++ G 
Sbjct: 125 ---EVSIGYVASVSRNKRPREKDDRTPVNNLARHNSSPAGLFSSIDVETAYAAVMKSMGG 181

Query: 208 FRACN---GTNLEAS--TSASRL----------INRVNLSPGDPWDDASFSG--VKRARD 250
           F   N    +N EAS  T  S+L          I+ V++ PG       FS     R   
Sbjct: 182 FGGSNVMSTSNTEASSLTPRSKLLPPTSRAMSPISEVDVKPG-------FSSRLPPRTLS 234

Query: 251 STCNMSFG-------------------LDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAA 291
              N SFG                   LD Y+T++ +S ++   L HH+SLPK+   ++ 
Sbjct: 235 GGFNRSFGNEGSASSKLTALARTQSGGLDQYKTKDEDSASRRPPLAHHMSLPKS---LSD 291

Query: 292 VEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEM 351
           +E+ L    S+PCKIRAKRGCATHPRSIAERVRRT+ISERMRKLQDL PNMD QTNTA+M
Sbjct: 292 IEQLL--SDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADM 349

Query: 352 LDLAVEHIKDLQKQVKLLTDNKAKCMC 378
           LDLAV++IKDLQ+QVK L +++A+C C
Sbjct: 350 LDLAVQYIKDLQEQVKALEESRARCRC 376

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H102|BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1

 Score =  154 bits (390), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 181/367 (49%), Gaps = 63/367 (17%)

Query: 41  LTRYRSAPSSFLESLVNGNSGGG--NCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSH 98
           L RY SAP SFL S+V+   GGG  N  D+  ++PSS   DNF+  +     G+ DS S 
Sbjct: 23  LIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSS---DNFIGNFF---TGAADSSSL 76

Query: 99  ASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVA 158
            S                   N  S+G  Q+   N   ++   DI       +D SYG  
Sbjct: 77  RSDSTTCGV------------NNSSDGQKQLGNNN--NNNSNKDI------FLDRSYGGF 116

Query: 159 SSMALENSMQE--RMATGNGSNLTRQNSSPAGLFSNLGVD-NGFA-----------GMRN 204
           + ++ ++   +     +    +L RQ SSPA  F+ L  D N F+           G  N
Sbjct: 117 NEISQQHKSNDIGGGNSSGSYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSN 176

Query: 205 GGCFRACNGTNLEASTSASRL-INRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYE 263
           GG   +   + L  +   S   IN VN +P       SFS       +T       D+++
Sbjct: 177 GGRGHSRLKSQLSFTNHDSLARINEVNETPVHDGSGHSFSAASFGAATT-------DSWD 229

Query: 264 TQNGNSGNQSTR-----------LVHHLSLPKTSAEMAAVEKFLHF-QGSVPCKIRAKRG 311
             +G+ G   TR           L    SLP  ++ M  ++ F+   + SVPCKIRAKRG
Sbjct: 230 DGSGSIGFTVTRPSKRSKDMDSGLFSQYSLPSDTS-MNYMDNFMQLPEDSVPCKIRAKRG 288

Query: 312 CATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTD 371
           CATHPRSIAER RRTRIS +++KLQDL PNMDKQT+ ++MLDLAV+HIK LQ Q++ L  
Sbjct: 289 CATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKK 348

Query: 372 NKAKCMC 378
           ++  C C
Sbjct: 349 DQENCTC 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/247 (38%), Positives = 129/247 (52%), Gaps = 50/247 (20%)

Query: 139 VGNDISVNVGNAMDNSYGVASSM--ALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVD 196
            GN+ S  V  + D+S+   SS+   L N  Q       G    RQNSSPA   S     
Sbjct: 60  TGNNNSGGVITSRDDSFEFLSSVEQGLYNHHQ-------GGGFHRQNSSPADFLSG---- 108

Query: 197 NGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMS 256
              +G    G F     +N     +   L   V++SP            KR+RD     S
Sbjct: 109 ---SGSGTDGYF-----SNFGIPANYDYLSTNVDISP-----------TKRSRDMETQFS 149

Query: 257 FGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHP 316
             L   +   G SG      +  +++ K             F+ SVPC++RAKRGCATHP
Sbjct: 150 SQLKEEQMSGGISG------MMDMNMDKI------------FEDSVPCRVRAKRGCATHP 191

Query: 317 RSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376
           RSIAERVRRTRIS+R+R+LQ+L PNMDKQTNTA+ML+ AVE++K LQ Q++ LT+ + +C
Sbjct: 192 RSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRC 251

Query: 377 MCPNKQK 383
            C  K++
Sbjct: 252 KCKPKEE 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW81|BH129_ARATH Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129 PE=2 SV=2

 Score =  125 bits (315), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 89/120 (74%), Gaps = 3/120 (2%)

Query: 250 DSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF-QGSVPCKIRA 308
           +S+ ++SF +D    ++ NS   +  L    S+P+T+ EMA +E  ++  + SVPC+ RA
Sbjct: 178 NSSSHISFTIDQPGKRSKNSDFFT--LETQYSMPQTTLEMATMENLMNIPEDSVPCRARA 235

Query: 309 KRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKL 368
           KRG ATHPRSIAER RRTRIS +++KLQ+L PNMDKQT+ A+MLDLAVEHIK LQ QV++
Sbjct: 236 KRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVEV 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 73/86 (84%)

Query: 298 FQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVE 357
            + SV  ++RAKRGCATHPRSIAERVRRTRIS+R+RKLQ+L PNMDKQTNTA+ML+ AVE
Sbjct: 176 MEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVE 235

Query: 358 HIKDLQKQVKLLTDNKAKCMCPNKQK 383
           ++K LQ+Q++ LT+ + +C C  K++
Sbjct: 236 YVKVLQRQIQELTEEQKRCTCIPKEE 261

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 304 CKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQ 363
            KIRA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  ++++K LQ
Sbjct: 136 TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQ 194

Query: 364 KQVKLLT 370
            QVK+L+
Sbjct: 195 LQVKVLS 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 52/66 (78%), Gaps = 1/66 (1%)

Query: 305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
           ++RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  +E+++ LQ 
Sbjct: 98  RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query: 365 QVKLLT 370
           QVK+L+
Sbjct: 157 QVKVLS 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2

 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 52/66 (78%), Gaps = 1/66 (1%)

Query: 305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
           K+RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  ++++K LQ 
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query: 365 QVKLLT 370
           QVK+L+
Sbjct: 188 QVKVLS 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 47/65 (72%)

Query: 306 IRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ 365
           +RA+RG AT   SIAERVRR +ISERM+ LQDL P  DK T  A MLD  + +++ LQ+Q
Sbjct: 172 VRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQ 231

Query: 366 VKLLT 370
           ++ L+
Sbjct: 232 IEFLS 236

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
224106043	421	predicted protein [Populus trichocarpa]	0.961	0.878	0.601	1e-125
255544250	432	DNA binding protein, putative [Ricinus c	0.966	0.861	0.547	1e-112
224055255	413	predicted protein [Populus trichocarpa]	0.953	0.888	0.550	1e-107
359487434	408	PREDICTED: transcription factor bHLH130-	0.903	0.852	0.475	1e-82
449436269	419	PREDICTED: transcription factor bHLH130-	0.935	0.859	0.435	1e-79
147862096	446	hypothetical protein VITISV_018653 [Viti	0.828	0.715	0.429	2e-72
356525636	450	PREDICTED: transcription factor bHLH130-	0.976	0.835	0.42	4e-71
147789805	394	hypothetical protein VITISV_008845 [Viti	0.859	0.840	0.423	7e-71
225441696	405	PREDICTED: transcription factor bHLH130-	0.859	0.817	0.423	7e-71
356557136	445	PREDICTED: transcription factor bHLH128-	0.976	0.844	0.408	4e-69

>gi|224106043|ref|XP_002314023.1| predicted protein [Populus trichocarpa] gi|222850431|gb|EEE87978.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 257/427 (60%), Positives = 296/427 (69%), Gaps = 57/427 (13%)

Query: 1   MSLLYTPNFKYPEGDLRKNQEFMD-SSAHY-DQQNDQLSDSSLTRYRSAPSSFLESLVNG 58
           M+LLY+ +FKY +G+LRK+QEFMD +  HY  QQ     +S L RYRSAPSS LESLVNG
Sbjct: 1   MNLLYSSSFKYSDGELRKSQEFMDLNPYHYHQQQQQIQQNSGLMRYRSAPSSILESLVNG 60

Query: 59  NSG--GGNCE--DYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVK-AMKQEEP 113
            SG  GG  E  DYR  R SSPE+D  LA++M  CNGSGDS S   QEFG + A+KQE  
Sbjct: 61  TSGHDGGGIESGDYRYLRSSSPEMDTMLARFMSSCNGSGDSSSQNLQEFGERPAIKQE-- 118

Query: 114 EPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQ-ERMA 172
                      G S+MVYQ+LP H++  D SV+VGN+MD+++ V SSMALENSMQ  +M+
Sbjct: 119 ----------GGDSEMVYQSLPGHNLVTDNSVSVGNSMDSAFNVMSSMALENSMQATKMS 168

Query: 173 TGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLS 232
           T NGSNL RQNSSPAGLFS+LGVDNGF  MR GG FRA NGTN EAS + ++L   VN S
Sbjct: 169 TANGSNLARQNSSPAGLFSDLGVDNGFVVMREGGSFRAGNGTNGEASPT-NKLRRHVNFS 227

Query: 233 PG-----------------------------------DPWDDASFSGVKRARDSTCNMSF 257
            G                                   D WD AS SG+KR RD+  NM  
Sbjct: 228 SGQRMLPQIAEIGEECIGGRSPEGDVSEARYMSRFTSDSWDGASLSGLKRQRDNDGNMFS 287

Query: 258 GLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQG-SVPCKIRAKRGCATHP 316
           GL+  + Q+GNSGN+ T L HHLSLPKT +E A +EKFL FQG SVPCKIRAKRG ATHP
Sbjct: 288 GLNTLDNQDGNSGNRVTGLTHHLSLPKTLSETATIEKFLDFQGNSVPCKIRAKRGFATHP 347

Query: 317 RSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376
           RSIAERVRRTRISERMRKLQ+LFPNMDKQTNTA+MLDLAVEHIKDLQKQVK LTD KAKC
Sbjct: 348 RSIAERVRRTRISERMRKLQELFPNMDKQTNTADMLDLAVEHIKDLQKQVKTLTDTKAKC 407

Query: 377 MCPNKQK 383
            C +KQK
Sbjct: 408 TCSSKQK 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544250|ref|XP_002513187.1| DNA binding protein, putative [Ricinus communis] gi|223547685|gb|EEF49178.1| DNA binding protein, putative [Ricinus communis]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/424 (54%), Positives = 285/424 (67%), Gaps = 52/424 (12%)

Query: 1   MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGN- 59
           MSLLY+ +FK+ EG+ RKNQEFMD + H+  Q+    +S L RYRSAP SFL+SL+NG  
Sbjct: 17  MSLLYSTSFKHQEGEFRKNQEFMDLNHHHCNQDPLHHNSGLMRYRSAPGSFLDSLINGTT 76

Query: 60  SGGGN-CEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVK-AMKQEEPEPIT 117
           SGGGN C+DYR FR SSPE++  L+++M  CNGSGDS S   QE+G +  MKQE  +P  
Sbjct: 77  SGGGNECQDYRSFRSSSPEMETILSRFMSTCNGSGDSNSQNLQEYGERPEMKQEMEDP-- 134

Query: 118 EQNEYSNGSSQMVYQNLPVHSVGND-ISVNVGNAMDNSYGVASSMALENSMQER-MATGN 175
                     QMVYQ+  V+++ N+  SV++ N++D+S+ V + MA+ENS+  R  +  N
Sbjct: 135 ----------QMVYQSSAVNNLANNGNSVDISNSVDSSFNVMNPMAMENSLPARKFSAVN 184

Query: 176 GSNLTRQNSSPAGLFSNLGVDN-GFAGMRNGGCFRACNGTNLEASTSASRLINRVNLS-- 232
           GSNL RQ+SSPAG FSNLGVDN GF   +  G F+  NG N E++ S SRL N +N S  
Sbjct: 185 GSNLVRQHSSPAGFFSNLGVDNNGFTITKEVGGFQVSNGLNGESNPSTSRLGNHLNFSSG 244

Query: 233 --------------PGDPWDDASF------------------SGVKRARDSTCNMSFGLD 260
                         PG    + S                   +  KR RD+  ++   L+
Sbjct: 245 QRLLPQIAETGDENPGASSPEGSIGKRQYMNFANDSWDDSSSNDFKRLRDNDGSVYSSLN 304

Query: 261 AYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIA 320
             E Q+GNSGN+ T L HHLSLPKT+ EMA VEKFL FQGSVPCKIRAKRG ATHPRSIA
Sbjct: 305 ILENQSGNSGNRITSLTHHLSLPKTAGEMATVEKFLQFQGSVPCKIRAKRGFATHPRSIA 364

Query: 321 ERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPN 380
           ERVRRTRISERMRKLQDLFPNMDKQTNTA+MLDLAVE+IKDLQKQVK L D KAKC CP+
Sbjct: 365 ERVRRTRISERMRKLQDLFPNMDKQTNTADMLDLAVEYIKDLQKQVKTLKDTKAKCTCPS 424

Query: 381 KQKL 384
           KQK+
Sbjct: 425 KQKI 428

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055255|ref|XP_002298446.1| predicted protein [Populus trichocarpa] gi|222845704|gb|EEE83251.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/429 (55%), Positives = 278/429 (64%), Gaps = 62/429 (14%)

Query: 1   MSLLYTPNFKYPEGDLRKNQEFMDSSA---HYDQQNDQLSDSSLTRYRSAPSSFLESLVN 57
           MSLLY+P+F Y +G+LRK+QEFMD +    H+ QQ     +S L  YRSAPSSFLESLVN
Sbjct: 1   MSLLYSPSFNYSDGELRKSQEFMDLNLYHYHHQQQQQIQQNSGLKSYRSAPSSFLESLVN 60

Query: 58  GNSGGGN------CEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQE 111
           G SG          EDYR  R SSP +D  L + M  CNGSGD  S   QEF      +E
Sbjct: 61  GTSGHNGGNGGVGSEDYRYLRSSSPGMDTMLKRPMSSCNGSGDFNSQNLQEF------EE 114

Query: 112 EPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQ-ER 170
            P    EQ +     S+MVY++LP H++    SV+VGN++D+++ V +SM LENS Q  +
Sbjct: 115 RPAIRQEQED-----SEMVYRSLPGHNLVKGNSVSVGNSLDSAFSVMNSMDLENSKQATK 169

Query: 171 MATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVN 230
           M+T NGSNL RQNSSPAG+ SN GVDNGFA MRN G FRA NGTN EA+ S SRL + VN
Sbjct: 170 MSTRNGSNLARQNSSPAGILSNHGVDNGFAVMRNAGSFRAGNGTNGEATPSTSRLRSHVN 229

Query: 231 LSPG-----------------------------------DPWDDASFSGVKRARDSTCNM 255
            S G                                   D W DAS     R +D+  NM
Sbjct: 230 FSSGHRTLPQIAEIGEECIGGSSPEGDFSKRKYMYNFNSDTWGDAS-----RLKDNDGNM 284

Query: 256 SFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGS-VPCKIRAKRGCAT 314
             GL+  E+Q GNSGN+ T L HHLSLPKT AEMA  EKFL FQG+ VPCKIRAKRG AT
Sbjct: 285 FSGLNRRESQVGNSGNRMTGLTHHLSLPKTVAEMATAEKFLDFQGNFVPCKIRAKRGFAT 344

Query: 315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKA 374
           HPRSIAERVRRTRISERMRKLQ+LFP+MDKQT+TA+ LDL++E IKDLQKQVK L D KA
Sbjct: 345 HPRSIAERVRRTRISERMRKLQELFPDMDKQTSTADKLDLSIELIKDLQKQVKSLADTKA 404

Query: 375 KCMCPNKQK 383
           KC C +KQK
Sbjct: 405 KCTCSSKQK 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487434|ref|XP_003633592.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 197/414 (47%), Positives = 242/414 (58%), Gaps = 66/414 (15%)

Query: 10  KYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYR 69
           K+ E  LRK+ E M     Y+ Q+    +S L RY+SAPSS L S V+G+S         
Sbjct: 13  KFSEEVLRKSGELMAPDV-YNHQHHPHQNSGLMRYQSAPSSLLGSFVDGSSVH------- 64

Query: 70  CFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEP---EPITEQNEYSNGS 126
             + SS E +   A+ M     SG S S   Q  GV AMK EE    E + +QN YSNGS
Sbjct: 65  -LQSSSHETETMFARLM-----SGSSDSQGLQ--GVGAMKHEEEVMVEGVPQQNGYSNGS 116

Query: 127 SQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSP 186
            QM+Y + P+ ++    S +    M++S+   +SMA ENSM+ R    N S+L RQ+SSP
Sbjct: 117 -QMIYNSQPMQTISVHNSASPRTNMESSF--MTSMAAENSMKIR--NENCSSLVRQSSSP 171

Query: 187 AGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPG------------ 234
            GLF NL  +NGF   R  G  RA N TN+EA+ S SRL N+++ S G            
Sbjct: 172 PGLFPNLTSENGFTPTREMGNLRAGNSTNVEANPSVSRLNNQISFSSGLSSCNGLLPKIS 231

Query: 235 -----------------------------DPWDDASFSGVKR-ARDSTCNMSFGLDAYET 264
                                        D W D+ FSG+ R A D+   M  GL++ E 
Sbjct: 232 EIRNENIGLHSPKDGNNSNSRCYISNFTTDSWSDSPFSGLTRMAADNDLKMFSGLNSLEA 291

Query: 265 QNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVR 324
           QN +S  +S  L HHLSLPK   ++  +EKFLHFQ SVPCKIRAKRGCATHPRSIAERVR
Sbjct: 292 QNVDSRYRSLGLTHHLSLPKNFPQITTIEKFLHFQDSVPCKIRAKRGCATHPRSIAERVR 351

Query: 325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMC 378
           RTRISERMRKLQ+LFPNMDKQTNTA+MLDLAVE+IKDLQKQVK L D K KC C
Sbjct: 352 RTRISERMRKLQELFPNMDKQTNTADMLDLAVEYIKDLQKQVKTLNDTKVKCTC 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436269|ref|XP_004135915.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus] gi|449521930|ref|XP_004167982.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 188/432 (43%), Positives = 248/432 (57%), Gaps = 72/432 (16%)

Query: 1   MSLLYTPNFKYPEGDLRKNQEFMD--SSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNG 58
           MSLLY+ NFK+   +++K  +FMD  S+ ++  Q +  +   L RY SAP+S   SLV+G
Sbjct: 1   MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPTSLFASLVDG 60

Query: 59  -------NSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQE 111
                  N+GGG  EDYR  R SSPE++  L+++M  CNG  DSGS      G + +K+E
Sbjct: 61  TEGFNSSNNGGGTREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS------GERTVKEE 114

Query: 112 EPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGN--AMDNSYGVASSMALENSMQE 169
             EP+ +QN + N  S MV          N  SV+ G    + NSYGV +S   +NSMQ 
Sbjct: 115 TGEPVQQQNGFCNQPSSMV----------NTRSVDAGGRAPVGNSYGVMNSSDFDNSMQS 164

Query: 170 RMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRV 229
           ++   N SNL RQ+SSPAG FS+L  +NG    R    F  CN  +++A+  ++R+ +++
Sbjct: 165 QLGARNCSNLFRQSSSPAGFFSHLIAENGNT-TREVDKFGTCNRKDVDAAYPSTRIGSQM 223

Query: 230 NLS---------------------------------PGD----------PWDDASFSGVK 246
           NLS                                  GD           WD+++    K
Sbjct: 224 NLSGHSFGSNHMPPIAEEENKSIGIVGSSRHRQKANSGDRLQTDDFLNSSWDNSAMRDTK 283

Query: 247 RARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKI 306
           R RD+           ETQN +SGN    L HHLSLP  S     VEKFL FQ  VP +I
Sbjct: 284 RGRDNNGRAFATSIVLETQNADSGNNIRGLAHHLSLP-ISFNKDPVEKFLRFQEPVPHQI 342

Query: 307 RAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQV 366
           RAKRGCATHPRSIAER+RRTRISER++KLQ+LFP+MDKQT+TA+ML+LAVE+IK LQ+QV
Sbjct: 343 RAKRGCATHPRSIAERMRRTRISERIKKLQELFPDMDKQTSTADMLELAVEYIKGLQRQV 402

Query: 367 KLLTDNKAKCMC 378
           K LTD KAKC C
Sbjct: 403 KTLTDTKAKCTC 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862096|emb|CAN80884.1| hypothetical protein VITISV_018653 [Vitis vinifera]

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 180/419 (42%), Positives = 231/419 (55%), Gaps = 100/419 (23%)

Query: 38  DSSLTRYRSAPSSFLESLVNGNSGGGNCEDY-----------RCF--RPSSPEIDNFLAK 84
           +SSL RYRSAPSS+  + ++G     +CE++           R F  RPSSPE +   ++
Sbjct: 16  NSSLMRYRSAPSSYFSNFIDGE----DCEEFLQHRPSSPETERIFSSRPSSPETERIFSR 71

Query: 85  YMLPCNGSGDSGSHASQEF--GVKAMKQEEPEPITEQNEY----------------SNG- 125
           +M    G+ DS SH         +AM  E    +++QN++                 NG 
Sbjct: 72  FMA-SGGTEDSSSHTVMNMRQNSQAMAPESVVVVSQQNQFMASMKHGAEVLQQQQQQNGY 130

Query: 126 --SSQMVYQN---LPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLT 180
              SQM+YQ    +P H+     +V      +NSY   SSM ++ S Q ++  GN SNL 
Sbjct: 131 ASGSQMMYQTSSPMPHHNSAAPGTV------ENSYSAVSSMGMDQSQQXKIGGGNNSNLI 184

Query: 181 RQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEAS-TSASRLINRVN--------- 230
           R +SSPAGLFS+L V+NG+A MR  G F + +GTN E S +SASRL  ++N         
Sbjct: 185 RHSSSPAGLFSHLNVENGYAIMRGMGNFGSGSGTNGEPSFSSASRLKGQINFSSGPPSSS 244

Query: 231 -------------LSPGDP-----------------------WDDA-----SFSGVKRAR 249
                        +  G P                       WDD+     SFS +K  R
Sbjct: 245 GLVTPISEMGNKSMGTGSPDNGSFGEGHSNSGGFITGFPIGSWDDSAIMSESFSSLKSVR 304

Query: 250 DSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLP-KTSAEMAAVEKFLHFQGSVPCKIRA 308
           D       GL+A E Q G   N+   L HHLSLP KTSA++  +EK+L FQ SVPCKIRA
Sbjct: 305 DDEAKTFSGLNASEAQKGEPANRPPVLAHHLSLPTKTSADLTTIEKYLQFQDSVPCKIRA 364

Query: 309 KRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           KRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQTNT++MLDLAV++IKDLQKQVK
Sbjct: 365 KRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQKQVK 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525636|ref|XP_003531430.1| PREDICTED: transcription factor bHLH130-like [Glycine max]

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 189/450 (42%), Positives = 253/450 (56%), Gaps = 74/450 (16%)

Query: 1   MSLLYTPNFKYP--EGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLV-N 57
           MS++Y+P   Y   E  LRKNQ+ MDSS  + QQ+    +S L RY SAPSS L SL+ N
Sbjct: 1   MSVMYSPVLNYSDVEHQLRKNQD-MDSSIGHPQQHCHQPNSGLLRYCSAPSSLLASLIDN 59

Query: 58  GNSGGGNCEDYRC-------------FRPS-SPEIDNFLAKYMLPCNGSGDSGSHASQEF 103
              G  N E +               + PS S E++  L+K +LP N +G S S A QEF
Sbjct: 60  TIHGCVNEESFTSENHHHQQQQQQQHYLPSTSSEMETMLSK-LLPSN-NGWSNSEALQEF 117

Query: 104 GVKAMKQEEPEPITE----QNEYSNGSSQMVYQNLPVHSVGNDISVNVGNA-MDNSYGVA 158
           G K +KQE  E I +    QN YS G SQ++YQ+  +  + N  S +   +  D S+GV 
Sbjct: 118 GGKPVKQEIGESIPQEPPQQNGYSYGGSQLIYQSQQIQGLPNGGSSSASGSAFDGSFGVV 177

Query: 159 SSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTN--- 215
            SMA E+S+Q +M   N SNL RQ SSPA  FS   ++N  A +R  G F+A + +N   
Sbjct: 178 HSMASEDSIQSKMGIRNCSNLFRQKSSPAAFFS---IENDLAALREVGSFKADDVSNGLV 234

Query: 216 ----------------------------------LEASTSASR-LIN-------RVNLSP 233
                                             LE +   SR L+N        +    
Sbjct: 235 TASTGGLHSSHTFSSRPSSCLKRLPQIAENGNESLEENCDQSRNLVNDNGSSKCYIPSFT 294

Query: 234 GDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVE 293
            + W+ ++F+  K   +     S   +  E+Q  +   Q+  L HHLSLP +S +M+++E
Sbjct: 295 NELWESSAFNAPKTENEDEIMFSTS-NILESQEADFSFQNLGLTHHLSLPSSSTKMSSIE 353

Query: 294 KFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLD 353
           KFL  QGSVPCKIRAKRG ATHPRSIAERVRRTRISER++KLQDLFP  +KQT+TA+MLD
Sbjct: 354 KFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLD 413

Query: 354 LAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 383
           LAVE+IKDLQ++VK+L+D KAKC C + +K
Sbjct: 414 LAVEYIKDLQQKVKILSDCKAKCKCTSNEK 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789805|emb|CAN62935.1| hypothetical protein VITISV_008845 [Vitis vinifera]

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 186/439 (42%), Positives = 232/439 (52%), Gaps = 108/439 (24%)

Query: 1   MSLLYTPNFKYP-EGDLRKNQE-FMDSSA--HYDQQNDQLSDSSLTRYRSAPSSFLESLV 56
           MSL+Y+ NFK+  E +  K +  FMDS+   H+ Q  +Q  +S L R+RSAPSS L +  
Sbjct: 1   MSLMYSSNFKHSGEEETEKTRAVFMDSNTNYHHQQNQNQPPNSGLLRFRSAPSSLLANFT 60

Query: 57  NGNSG---GGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEP 113
           +   G   G N              D+F ++  +PC G  DS      +   +  +Q   
Sbjct: 61  DSGDGVHKGANL------------CDDFESERFMPCGGFQDSAMSCQSQLPPQYPRQS-- 106

Query: 114 EPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMAT 173
                                         S    +AMD SYGV +S    N+M+ +   
Sbjct: 107 ------------------------------SSTSSSAMDGSYGVVNS----NNMEAKQ-- 130

Query: 174 GNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSP 233
             GS+L RQ+SSPAGLFS+L   NG+A MR  G FR  N  N E S S SRL  +V+ S 
Sbjct: 131 --GSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPSTSRLKPQVSFSS 188

Query: 234 GDP---------------------------------------------WDDAS----FSG 244
           G P                                             W+D++    FSG
Sbjct: 189 GLPSSLGLLPQISEIGSECIQASSPNDRKLANSNGDARFYSPGFPYGSWNDSAHFENFSG 248

Query: 245 VKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPC 304
           +KR +D+   +  G +    +N   G++S  L HHLSLPKTSAEMAA+EKFL FQ SVPC
Sbjct: 249 MKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAMEKFLQFQDSVPC 308

Query: 305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
           KIRAKRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQTNTA+MLDLAVE+IKDLQK
Sbjct: 309 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQK 368

Query: 365 QVKLLTDNKAKCMCPNKQK 383
           Q   LTDN+A C C  KQK
Sbjct: 369 QYNTLTDNRAHCKCLGKQK 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441696|ref|XP_002277274.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]

 Score =  273 bits (699), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 186/439 (42%), Positives = 232/439 (52%), Gaps = 108/439 (24%)

Query: 1   MSLLYTPNFKYP-EGDLRKNQE-FMDSSA--HYDQQNDQLSDSSLTRYRSAPSSFLESLV 56
           MSL+Y+ NFK+  E +  K +  FMDS+   H+ Q  +Q  +S L R+RSAPSS L +  
Sbjct: 12  MSLMYSSNFKHSGEEETEKTRAVFMDSNTNYHHQQNQNQPPNSGLLRFRSAPSSLLANFT 71

Query: 57  NGNSG---GGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEP 113
           +   G   G N              D+F ++  +PC G  DS      +   +  +Q   
Sbjct: 72  DSGDGVHKGANL------------CDDFESERFMPCGGFQDSAMSCQSQLPPQYPRQS-- 117

Query: 114 EPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMAT 173
                                         S    +AMD SYGV +S    N+M+ +   
Sbjct: 118 ------------------------------SSTSSSAMDGSYGVVNS----NNMEAK--- 140

Query: 174 GNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSP 233
             GS+L RQ+SSPAGLFS+L   NG+A MR  G FR  N  N E S S SRL  +V+ S 
Sbjct: 141 -QGSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPSTSRLKPQVSFSS 199

Query: 234 GDP---------------------------------------------WDDAS----FSG 244
           G P                                             W+D++    FSG
Sbjct: 200 GLPSSLGLLPQISEIGSECIQASSPNDRKLANSNGDARFYSPGFPYGSWNDSAHFENFSG 259

Query: 245 VKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPC 304
           +KR +D+   +  G +    +N   G++S  L HHLSLPKTSAEMAA+EKFL FQ SVPC
Sbjct: 260 MKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAMEKFLQFQDSVPC 319

Query: 305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
           KIRAKRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQTNTA+MLDLAVE+IKDLQK
Sbjct: 320 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQK 379

Query: 365 QVKLLTDNKAKCMCPNKQK 383
           Q   LTDN+A C C  KQK
Sbjct: 380 QYNTLTDNRAHCKCLGKQK 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557136|ref|XP_003546874.1| PREDICTED: transcription factor bHLH128-like [Glycine max]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 182/445 (40%), Positives = 247/445 (55%), Gaps = 69/445 (15%)

Query: 1   MSLLYTPNFKYP--EGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNG 58
           MS++Y+P   Y   E  L KNQ+ MDSS  + QQ+   S+S L RY SAPSS L SL++ 
Sbjct: 1   MSVMYSPVLNYSDVEYQLWKNQD-MDSSIGHPQQHCHQSNSGLLRYCSAPSSMLASLIDN 59

Query: 59  NSGG---------GNCEDYRCFRPS-SPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAM 108
              G          N +  + + PS S E++  L+K  +P +  G S S   QEFG K +
Sbjct: 60  TIHGCVNEEPFTSENQQQQQHYLPSTSSEMETMLSK--MPPSNIGWSNSEPLQEFGGKPV 117

Query: 109 KQE----EPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALE 164
           KQE     P+   +QN YS G SQ++YQ+  +  + N  S+   +A D S+G  +SMA E
Sbjct: 118 KQEIGQSVPQGPPKQNGYSYGGSQLIYQSQQIQGLPNGSSIASISAFDGSFGAVNSMASE 177

Query: 165 NSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFR--------------- 209
           +S+Q +M   N SNL RQ SSPAG FS   ++N  A +R  G F+               
Sbjct: 178 DSIQSKMGVRNCSNLFRQKSSPAGFFS---IENDLAALREVGSFKDNDVSNGQATASTSG 234

Query: 210 ----------------------ACNGT-NLEASTSASR-LIN-------RVNLSPGDPWD 238
                                 A NG  +LE +   SR L+N        +     + W+
Sbjct: 235 LHSSLTFSSRSSSCLKQMPPQIAENGNESLEENYDQSRNLVNDNGSSKCYIPSFTNEFWE 294

Query: 239 DASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF 298
            ++F+  K   +     S   +  E+Q  +   Q+  L HHLSLP +S +M+++E FL  
Sbjct: 295 SSAFNAPKTENEDEIMFSTS-NGLESQETDFSYQNHGLTHHLSLPSSSTKMSSIEMFLQI 353

Query: 299 QGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEH 358
           QGSVP KIRAKRG ATHPRSIAER RRTRISER++KLQDLFP  +K T+TA+MLDLAVEH
Sbjct: 354 QGSVPYKIRAKRGFATHPRSIAERERRTRISERIKKLQDLFPRSEKPTSTADMLDLAVEH 413

Query: 359 IKDLQKQVKLLTDNKAKCMCPNKQK 383
           IKDLQ+QV++L+D KAKC C   +K
Sbjct: 414 IKDLQQQVQILSDRKAKCKCTRNEK 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
TAIR|locus:2026037	379	FBH3 "AT1G51140" [Arabidopsis	0.306	0.311	0.642	1.3e-55
TAIR|locus:2059979	359	FBH4 "AT2G42280" [Arabidopsis	0.862	0.924	0.381	4.7e-48
UNIPROTKB|Q8S490	150	rau1 "Transcription factor RAU	0.345	0.886	0.668	3.9e-44
TAIR|locus:505006103	362	AT1G05805 "AT1G05805" [Arabido	0.885	0.941	0.352	2.4e-37
TAIR|locus:2008693	259	FBH1 "AT1G35460" [Arabidopsis	0.223	0.332	0.662	3e-33
TAIR|locus:2141573	262	FBH2 "AT4G09180" [Arabidopsis	0.514	0.755	0.375	7.7e-31
UNIPROTKB|Q7XT55	218	OSJNBa0084K20.3 "OSJNBa0076N16	0.306	0.541	0.578	4.9e-30
TAIR|locus:2126624	310	LRL2 "AT4G30980" [Arabidopsis	0.168	0.209	0.575	1.3e-11
TAIR|locus:2147760	297	LRL3 "AT5G58010" [Arabidopsis	0.168	0.218	0.560	1.4e-11
UNIPROTKB|Q6Z7E7	524	P0020C11.18 "Putative bHLH tra	0.181	0.133	0.535	1.4e-11

TAIR|locus:2026037 FBH3 "AT1G51140" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 79/123 (64%), Positives = 101/123 (82%)

Query:   256 SFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATH 315
             S GLD Y+T++ +S ++   L HH+SLPK+ ++   +E+ L    S+PCKIRAKRGCATH
Sbjct:   259 SGGLDQYKTKDEDSASRRPPLAHHMSLPKSLSD---IEQLL--SDSIPCKIRAKRGCATH 313

Query:   316 PRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAK 375
             PRSIAERVRRT+ISERMRKLQDL PNMD QTNTA+MLDLAV++IKDLQ+QVK L +++A+
Sbjct:   314 PRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRAR 373

Query:   376 CMC 378
             C C
Sbjct:   374 CRC 376

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2059979 FBH4 "AT2G42280" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 147/385 (38%), Positives = 207/385 (53%)

Query:    23 MDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFL 82
             MDS+ H    N   + S L R+RSAPSS L + V+ +  G        F     + D  L
Sbjct:     1 MDSNNHLYDPNP--TGSGLLRFRSAPSSVLAAFVDDDKIG--------F-----DSDRLL 45

Query:    83 AKYMLPCNGSGDSGSHASQEFGVKAMKQEE--------PEPITEQNEYSNGSSQMVYQNL 134
             ++++     +GD GS   ++    ++            P P  E + +         Q+ 
Sbjct:    46 SRFVTSNGVNGDLGSPKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHYPRQSK 105

Query:   135 PV-HSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNL 193
              + +SVG D  + + N   ++  V S++  ++S    M T    NL+ QN    G   NL
Sbjct:   106 GIMNSVGLDQFLGINN--HHTKPVESNLLRQSSSPAGMFT----NLSDQNGY--GSMRNL 157

Query:   194 G--VDNGFAGMRNGGCFRACN-----GTNLEASTSASRLINRVNLSPGDPWDD-ASF--- 242
                 ++  +   + G  R C+      ++L   +    +    N  P   W+D +SF   
Sbjct:   158 MNYEEDEESPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPETNF-PYSHWNDPSSFIDN 216

Query:   243 -SGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPK---TSAEMAAVEKFLHF 298
              S +KR  +    +  G      QNG SGN+   L HHLSLPK   T+++M +V+K+L  
Sbjct:   217 LSSLKREAEDDGKLFLG-----AQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYLQL 271

Query:   299 QGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEH 358
             Q SVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQTNT++MLDLAV++
Sbjct:   272 QDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDY 331

Query:   359 IKDLQKQVKLLTDNKAKCMCPNKQK 383
             IKDLQ+Q K+L DN+A C C NK+K
Sbjct:   332 IKDLQRQYKILNDNRANCKCMNKEK 356

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0046685 "response to arsenic-containing substance" evidence=RCA

UNIPROTKB|Q8S490 rau1 "Transcription factor RAU1" [Oryza sativa (taxid:4530)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 97/145 (66%), Positives = 111/145 (76%)

Query:   239 DASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF 298
             D + SGVKR RDS+           +QNG  G     L H  SLPKTS+EMAA+EKFL F
Sbjct:    14 DTNISGVKRQRDSS---------EPSQNGGGGGG---LAHQFSLPKTSSEMAAIEKFLQF 61

Query:   299 QGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEH 358
             Q +VPCKIRAKRGCATHPRSIAERVRRTRISER+RKLQ+L PNMDKQTNTA+MLDLAV++
Sbjct:    62 QDAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDY 121

Query:   359 IKDLQKQVKLLTDNKAKCMCPNKQK 383
             IKDLQKQVK L D++A C C  K +
Sbjct:   122 IKDLQKQVKGLNDSRANCTCSAKHQ 146

GO:0005634 "nucleus" evidence=IC

TAIR|locus:505006103 AT1G05805 "AT1G05805" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 131/372 (35%), Positives = 190/372 (51%)

Query:    25 SSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGG--NCEDYRCFRPSSPEIDNFL 82
             S++   Q++       L RY SAP SFL S+V+   GGG  N  D+  ++PSS   DNF+
Sbjct:     7 STSSSSQRSSLPGGGGLIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSS---DNFI 63

Query:    83 AKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVG-- 140
               +     G+ DS S  S           + +     N  +N S++ ++ +    S G  
Sbjct:    64 GNFF---TGAADSSSLRSDSTTCGVNNSSDGQKQLGNNN-NNNSNKDIFLD---RSYGGF 116

Query:   141 NDISV-NVGNAMD--NSYGVASSMALENSMQERMATGNGSNLTRQN-SSPAGLFSNLGVD 196
             N+IS  +  N +   NS G + S+A + S      T   S+    + + P   +S  G  
Sbjct:   117 NEISQQHKSNDIGGGNSSG-SYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGS 175

Query:   197 NGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVK---RARDSTC 253
             NG  G  +       + TN +   S +R IN VN +P       SFS         DS  
Sbjct:   176 NG--GRGHSRLKSQLSFTNHD---SLAR-INEVNETPVHDGSGHSFSAASFGAATTDSWD 229

Query:   254 NMSFGLDAYETQ-NGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF-QGSVPCKIRAKRG 311
             + S  +    T+ +  S +  + L    SLP  ++ M  ++ F+   + SVPCKIRAKRG
Sbjct:   230 DGSGSIGFTVTRPSKRSKDMDSGLFSQYSLPSDTS-MNYMDNFMQLPEDSVPCKIRAKRG 288

Query:   312 CATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTD 371
             CATHPRSIAER RRTRIS +++KLQDL PNMDKQT+ ++MLDLAV+HIK LQ Q++ L  
Sbjct:   289 CATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKK 348

Query:   372 NKAKCMCPNKQK 383
             ++  C C   +K
Sbjct:   349 DQENCTCGCSEK 360

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2008693 FBH1 "AT1G35460" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 57/86 (66%), Positives = 75/86 (87%)

Query:   298 FQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVE 357
             F+ SVPC++RAKRGCATHPRSIAERVRRTRIS+R+R+LQ+L PNMDKQTNTA+ML+ AVE
Sbjct:   173 FEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVE 232

Query:   358 HIKDLQKQVKLLTDNKAKCMCPNKQK 383
             ++K LQ Q++ LT+ + +C C  K++
Sbjct:   233 YVKALQSQIQELTEQQKRCKCKPKEE 258

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2141573 FBH2 "AT4G09180" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
 Identities = 81/216 (37%), Positives = 119/216 (55%)

Query:   171 MATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVN 230
             + TGN ++L     S    F  + V+ G    + GG F   N T  +  + +   I    
Sbjct:    61 LLTGNSNDLPTSRGSFE--FP-IPVEQGL--YQQGG-FHRQNSTPADFLSGSDGFIQSFG 114

Query:   231 LSPGDPWDDASFS---GVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSA 287
             +     +   +     G KR+R+      F    + +Q    G QS+  V     P   +
Sbjct:   115 IQANYDYLSGNIDVSPGSKRSREMEA--LFSSPEFTSQM--KGEQSSGQV-----PTGVS 165

Query:   288 EMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTN 347
              M+ +      + SV  ++RAKRGCATHPRSIAERVRRTRIS+R+RKLQ+L PNMDKQTN
Sbjct:   166 SMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTN 225

Query:   348 TAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 383
             TA+ML+ AVE++K LQ+Q++ LT+ + +C C  K++
Sbjct:   226 TADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPKEE 261

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q7XT55 OSJNBa0084K20.3 "OSJNBa0076N16.1 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 70/121 (57%), Positives = 87/121 (71%)

Query:   265 QNGNSGNQS--TRLVHHLSLPKTSAEMAAVEKFLHFQ-GSVPCKIRAKRGCATHPRSIAE 321
             ++G  GN      L ++ S      EMA VEK+L  Q   VP ++RAKRGCATHPRSIAE
Sbjct:    90 KSGAHGNDDIIATLSNYESQLVAPREMAGVEKYLQMQHDQVPFRVRAKRGCATHPRSIAE 149

Query:   322 RVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNK 381
             R RRTRISE++RKLQ L PNMDKQT+T++MLDLAV+HIK LQ Q++ L ++K KC C  K
Sbjct:   150 RERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQSQLQTLKEDKEKCTCSCK 209

Query:   382 Q 382
             Q
Sbjct:   210 Q 210

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2126624 LRL2 "AT4G30980" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 38/66 (57%), Positives = 52/66 (78%)

Query:   305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
             K+RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  ++++K LQ 
Sbjct:   129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query:   365 QVKLLT 370
             QVK+L+
Sbjct:   188 QVKVLS 193

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

TAIR|locus:2147760 LRL3 "AT5G58010" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 37/66 (56%), Positives = 52/66 (78%)

Query:   305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
             ++RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  +E+++ LQ 
Sbjct:    98 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query:   365 QVKLLT 370
             QVK+L+
Sbjct:   157 QVKVLS 162

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

UNIPROTKB|Q6Z7E7 P0020C11.18 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 182 (69.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 38/71 (53%), Positives = 54/71 (76%)

Query:   300 GSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHI 359
             G+   ++RA+RG AT P SIAER+RR +IS+RM+ LQ+L PN +K TN A MLD  ++++
Sbjct:   308 GAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNK-TNKASMLDEIIDYV 366

Query:   360 KDLQKQVKLLT 370
             K LQ QVK+L+
Sbjct:   367 KFLQLQVKVLS 377

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66GR3	BH130_ARATH	No assigned EC number	0.3853	0.8311	0.8913	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	385
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	2e-10
smart00353	53	smart00353, HLH, helix loop helix domain	4e-10
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	1e-07

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 316 PRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK 367
             ++ ER RR RI++   +L+ L P +   K+ + AE+L  AV++IK LQ+ ++
Sbjct: 7   AHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 318 SIAERVRRTRISERMRKLQDLFP--NMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           +  ER RR +I+E   +L+ L P    +K+ + AE+L LA+E+IK LQ++++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 318 SIAERVRRTRISERMRKLQDLFPN-MDKQTNTAEMLDLAVEHIKDLQ 363
           +  ER RR RI++   +L++L P   +K+ + AE+L LA+E+IK LQ
Sbjct: 6   NERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.3
smart00353	53	HLH helix loop helix domain.	99.29
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.23
KOG1318	411	consensus Helix loop helix transcription factor EB	99.08
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.64
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.34
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.19
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	97.96
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.8
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.52
PLN03217	93	transcription factor ATBS1; Provisional	97.31
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.08
KOG0561	373	consensus bHLH transcription factor [Transcription	96.83
KOG3910	632	consensus Helix loop helix transcription factor [T	92.02
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	90.96
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	89.62
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	85.61
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	82.98

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.30  E-value=4.1e-12  Score=93.65  Aligned_cols=53  Identities=36%  Similarity=0.602  Sum_probs=48.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK  367 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk  367 (385)
                      ..|+..||+||++||+.|..|+.|||..  ..+++|++||+.||+||+.|+.+++
T Consensus         6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            4589999999999999999999999999  3459999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.29  E-value=6.4e-12  Score=91.35  Aligned_cols=50  Identities=40%  Similarity=0.676  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 016638          318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK  367 (385)
Q Consensus       318 siaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk  367 (385)
                      +..||+||++||+.|..|+.|||.+  ..+++|++||++||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999963  2348999999999999999999886

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.23  E-value=1.6e-11  Score=90.76  Aligned_cols=48  Identities=33%  Similarity=0.562  Sum_probs=44.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhCCCC----CCCCChHHHHHHHHHHHHHHH
Q 016638          316 PRSIAERVRRTRISERMRKLQDLFPNM----DKQTNTAEMLDLAVEHIKDLQ  363 (385)
Q Consensus       316 phsiaERrRReKInerir~Lr~LVP~~----~Kq~dKAsILdeAIeYIK~LQ  363 (385)
                      .|+..||+||++||+.|.+|+.|||.+    ..+++|++||+.||+||+.||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            378999999999999999999999987    345999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.08  E-value=1e-10  Score=118.82  Aligned_cols=55  Identities=25%  Similarity=0.515  Sum_probs=49.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhCCCCCC---CCChHHHHHHHHHHHHHHHHHHHH
Q 016638          314 THPRSIAERVRRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKL  368 (385)
Q Consensus       314 t~phsiaERrRReKInerir~Lr~LVP~~~K---q~dKAsILdeAIeYIK~LQ~QVk~  368 (385)
                      ++.|+.+|||||++||+||++|..|||.|..   +++|+.||..+++||+.||+..++
T Consensus       234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~  291 (411)
T KOG1318|consen  234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR  291 (411)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence            3559999999999999999999999999832   378999999999999999987773

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.64  E-value=2.3e-08  Score=93.65  Aligned_cols=58  Identities=26%  Similarity=0.351  Sum_probs=50.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhCCCCCC------CCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016638          317 RSIAERVRRTRISERMRKLQDLFPNMDK------QTNTAEMLDLAVEHIKDLQKQVKLLTDNKA  374 (385)
Q Consensus       317 hsiaERrRReKInerir~Lr~LVP~~~K------q~dKAsILdeAIeYIK~LQ~QVk~L~~~~~  374 (385)
                      |.-+||+||+.|+.-...|++|||.|..      ++.||.||.++|+||.+|..++.+-+++..
T Consensus        66 HtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s  129 (229)
T KOG1319|consen   66 HTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVS  129 (229)
T ss_pred             HHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999997654      378999999999999999988877665553

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.34  E-value=2.4e-07  Score=89.07  Aligned_cols=52  Identities=33%  Similarity=0.630  Sum_probs=45.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhCCCCCC-------CCChHHHHHHHHHHHHHHHHHHHH
Q 016638          317 RSIAERVRRTRISERMRKLQDLFPNMDK-------QTNTAEMLDLAVEHIKDLQKQVKL  368 (385)
Q Consensus       317 hsiaERrRReKInerir~Lr~LVP~~~K-------q~dKAsILdeAIeYIK~LQ~QVk~  368 (385)
                      |-+.|||||.|||+=|.+|++|||.+.|       +++||+||+.||+|++.|+.....
T Consensus        36 Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~   94 (250)
T KOG4304|consen   36 KPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA   94 (250)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            5699999999999999999999995543       388999999999999999976543

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.19  E-value=8.1e-07  Score=97.74  Aligned_cols=66  Identities=26%  Similarity=0.363  Sum_probs=59.0

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016638          312 CATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCM  377 (385)
Q Consensus       312 ~at~phsiaERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~  377 (385)
                      ..+..|+++|||-|.-||+||.+|++|||+..-++.|..+|..||+||++|+...++|..+.+..+
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            457889999999999999999999999999877799999999999999999998888876665444

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=97.96  E-value=8.5e-06  Score=89.13  Aligned_cols=52  Identities=23%  Similarity=0.500  Sum_probs=48.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhCCCCC---CCCChHHHHHHHHHHHHHHHHH
Q 016638          314 THPRSIAERVRRTRISERMRKLQDLFPNMD---KQTNTAEMLDLAVEHIKDLQKQ  365 (385)
Q Consensus       314 t~phsiaERrRReKInerir~Lr~LVP~~~---Kq~dKAsILdeAIeYIK~LQ~Q  365 (385)
                      ..+|+.+|||||+++|.=|.+|.+|||.+.   .|+||-+||.+||.+||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            356899999999999999999999999987   5699999999999999998875

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.80  E-value=5.4e-05  Score=72.65  Aligned_cols=63  Identities=22%  Similarity=0.387  Sum_probs=51.7

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhCCCCCCC-CC-hHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638          314 THPRSIAERVRRTRISERMRKLQDLFPNMDKQ-TN-TAEMLDLAVEHIKDLQKQVKLLTDNKAKC  376 (385)
Q Consensus       314 t~phsiaERrRReKInerir~Lr~LVP~~~Kq-~d-KAsILdeAIeYIK~LQ~QVk~L~~~~~kc  376 (385)
                      +..|+.-||+||..|.+.+..|+.+||..... .. ++.||+.|++||+.|+.+..+.....++.
T Consensus        60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l  124 (232)
T KOG2483|consen   60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL  124 (232)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            34578999999999999999999999976442 23 69999999999999998887776555543

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.52  E-value=0.00019  Score=70.20  Aligned_cols=56  Identities=21%  Similarity=0.310  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhh-hCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016638          318 SIAERVRRTRISERMRKLQD-LFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNK  373 (385)
Q Consensus       318 siaERrRReKInerir~Lr~-LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~  373 (385)
                      .+-||||=.|+||-|.+|++ -+++-...+-|+.||.-||+||..||.-++++.++.
T Consensus       123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~  179 (284)
T KOG3960|consen  123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE  179 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            46799999999999999965 567777789999999999999999999998887654

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.31  E-value=0.00063  Score=57.25  Aligned_cols=54  Identities=28%  Similarity=0.511  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHhhhCCCC------CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638          322 RVRRTRISERMRKLQDLFPNM------DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC  376 (385)
Q Consensus       322 RrRReKInerir~Lr~LVP~~------~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc  376 (385)
                      |---+.|+|-+.+||.|+|..      +| ...+-||+||+.||+.|+.+|..|.+....+
T Consensus        16 risddqi~dLvsKLq~llPe~r~~r~s~k-~saskvLqEtC~YIrsLhrEvDdLSerLs~L   75 (93)
T PLN03217         16 RISEDQINDLIIKLQQLLPELRDSRRSDK-VSAARVLQDTCNYIRNLHREVDDLSERLSEL   75 (93)
T ss_pred             CCCHHHHHHHHHHHHHHChHHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344578999999999999943      33 5888999999999999999999999877543

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.08  E-value=0.0005  Score=64.47  Aligned_cols=57  Identities=26%  Similarity=0.334  Sum_probs=49.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhCCC--C-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016638          317 RSIAERVRRTRISERMRKLQDLFPN--M-DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNK  373 (385)
Q Consensus       317 hsiaERrRReKInerir~Lr~LVP~--~-~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~  373 (385)
                      ++..||.|=+-+|..|..||.+||.  . +|++.|..+|..||.||++|++-++.-+...
T Consensus       113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            4566999999999999999999994  3 6779999999999999999999887766544

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=96.83  E-value=0.00079  Score=67.48  Aligned_cols=52  Identities=23%  Similarity=0.374  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHH
Q 016638          318 SIAERVRRTRISERMRKLQDLFPNMD-KQTNTAEMLDLAVEHIKDLQKQVKLL  369 (385)
Q Consensus       318 siaERrRReKInerir~Lr~LVP~~~-Kq~dKAsILdeAIeYIK~LQ~QVk~L  369 (385)
                      +..||||=.-||--|..||.|+|--+ .|+.||.||+.+.+||..|+.+.-+|
T Consensus        65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l  117 (373)
T KOG0561|consen   65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL  117 (373)
T ss_pred             cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence            44599999999999999999999542 24999999999999999998765544

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=92.02  E-value=0.13  Score=54.94  Aligned_cols=54  Identities=26%  Similarity=0.353  Sum_probs=45.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 016638          317 RSIAERVRRTRISERMRKLQDLFP---NMDKQTNTAEMLDLAVEHIKDLQKQVKLLT  370 (385)
Q Consensus       317 hsiaERrRReKInerir~Lr~LVP---~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~  370 (385)
                      .+..||.|=..|||.|++|.+++-   +.+|--.|--||-.||.-|-.|++||.+-.
T Consensus       530 NNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  530 NNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            367799999999999999999875   344434789999999999999999998754

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=90.96  E-value=0.12  Score=48.02  Aligned_cols=48  Identities=27%  Similarity=0.398  Sum_probs=43.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhCCC--CCCCCChHHHHHHHHHHHHHHHHH
Q 016638          317 RSIAERVRRTRISERMRKLQDLFPN--MDKQTNTAEMLDLAVEHIKDLQKQ  365 (385)
Q Consensus       317 hsiaERrRReKInerir~Lr~LVP~--~~Kq~dKAsILdeAIeYIK~LQ~Q  365 (385)
                      |++-||+|-.-+|+-|..||.++|.  .+| +.|.--|..|-.||-+|=.-
T Consensus        82 anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~v  131 (173)
T KOG4447|consen   82 ANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQV  131 (173)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhhc
Confidence            6899999999999999999999994  466 89999999999999998543

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=89.62  E-value=0.27  Score=54.21  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=37.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhhCCC---CCCCCChHHHHHHHHHHHHH
Q 016638          319 IAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKD  361 (385)
Q Consensus       319 iaERrRReKInerir~Lr~LVP~---~~Kq~dKAsILdeAIeYIK~  361 (385)
                      -|.|.||.|=|+-|.+|..++|-   ..-++|||+|+..||-|+|-
T Consensus        52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            46899999999999999999993   33469999999999999973

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=85.61  E-value=0.74  Score=49.98  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHhhhCC----CCCCCCChHHHHHHHHHHHHH
Q 016638          321 ERVRRTRISERMRKLQDLFP----NMDKQTNTAEMLDLAVEHIKD  361 (385)
Q Consensus       321 ERrRReKInerir~Lr~LVP----~~~Kq~dKAsILdeAIeYIK~  361 (385)
                      -+|-|+|+|-.+..|..|+|    .+.| +||-+||..+|-|++.
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV   76 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence            47789999999999999999    3456 9999999999999863

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=82.98  E-value=1.2  Score=47.02  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhCCC---CCCCCChHHHHHHHHHHHHH
Q 016638          319 IAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKD  361 (385)
Q Consensus       319 iaERrRReKInerir~Lr~LVP~---~~Kq~dKAsILdeAIeYIK~  361 (385)
                      -+.|.||+|=|-.|.+|.+|+|-   ++.|+||++|+..|--|||-
T Consensus         7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen    7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence            45799999999999999999994   34579999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-11
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	2e-06
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	6e-06
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	7e-06
1a0a_A	63	BHLH, protein (phosphate system positive regulator	1e-05

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 13/54 (24%), Positives = 31/54 (57%)

Query: 318 SIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTD 371
           +  E+  R+ I++++ +L+DL    + + N + +L  A+++I+ LQ   + L  
Sbjct: 11  NAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 307 RAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNT-----AEMLDLAVEHIKD 361
             +R  A H  +  ER RR +I+  + +L  + P+   ++         +L  A ++I++
Sbjct: 3   EKRR--AQH--NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQE 58

Query: 362 LQKQVK 367
           L++   
Sbjct: 59  LRQSNH 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 58/447 (12%), Positives = 115/447 (25%), Gaps = 139/447 (31%)

Query: 10  KYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYR 69
           K+ E  LR N +F+ S    +Q+   +        R       + L N N        Y 
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQ---VFAKYN 130

Query: 70  CFRPSS-PEIDNFL-----AKY-----MLPCNGSG----------DSGSHASQEFGV--- 105
             R     ++   L     AK      +L   GSG                  +F +   
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 106 KAMKQEEPEPITE--QN-------EYSNGSSQMVYQNLPVHSVGN--------------- 141
                  PE + E  Q         +++ S       L +HS+                 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 142 ----DI-SVNVGNAMDNS---------YGVASSMALENSMQERMATGNGSNLTRQNSSPA 187
               ++ +    NA + S           V   ++   +    +   + + LT       
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEV--K 304

Query: 188 GLFSNLGVDNGFAGMRNGGCFR-ACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVK 246
            L         +   R     R          S  A  + + +     D W   +   + 
Sbjct: 305 SLLLK------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKLT 356

Query: 247 RARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKI 306
              +S+ N+   L+  E +         ++   LS+               F  S    I
Sbjct: 357 TIIESSLNV---LEPAEYR---------KMFDRLSV---------------FPPSA--HI 387

Query: 307 RAKRGC-------ATHPRSIAERVRRTRISERMRK-----LQDLFPNMDKQTNTAEMLDL 354
                         +    +  ++ +  + E+  K     +  ++  ++ +        L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--LELKVKLENEYAL 445

Query: 355 AVEHIKDLQKQVKLLTDNKAKCMCPNK 381
              H   +         N  K    + 
Sbjct: 446 ---HRSIVDH------YNIPKTFDSDD 463

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 313 ATHPRSIAERVRRTRISERMRKLQDLFPNMDKQ-TNTAEMLDLAVEHIKDLQKQVKLLTD 371
           A H  +  ER RR  I +    L+D  P++  +  + A++LD A E+I+ ++++      
Sbjct: 4   AHH--NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

Query: 372 NKAK 375
           +   
Sbjct: 62  DIDD 65

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 307 RAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQ-TNTAEMLDLAVEHIKDLQKQ 365
             KR  A H  +  ER RR  I +    L+D  P++  +  + A++LD A E+I+ ++++
Sbjct: 10  ADKR--AHH--NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65

Query: 366 VKLLTDNKAK 375
                 +   
Sbjct: 66  NHTHQQDIDD 75

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 307 RAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQT--NTAEMLDLAVEHIKDLQK 364
             KR   TH  ++ ER RR  +      L+D  P ++         +L  A  +I  +Q 
Sbjct: 4   NVKR--RTH--NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQA 59

Query: 365 QVKLLTDNKAK 375
           + + L   +  
Sbjct: 60  EEQKLISEEDL 70

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 319 IAERVRRTRISERMRKLQDLFPNMDKQTNT------AEMLDLAVEHIKDLQKQVK 367
            AE+ RR R++  + +L  L P   KQ N       A  ++ A  +I+ LQ+   
Sbjct: 8   HAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.65
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.64
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.5
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.47
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.46
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.44
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.43
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.42
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.39
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.3
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.24
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.97
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.94
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.84
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.8
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.68
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.39
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.86

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.65  E-value=1.6e-16  Score=134.97  Aligned_cols=75  Identities=24%  Similarity=0.375  Sum_probs=52.7

Q ss_pred             CCCCccccccccCCCCCchhHHHHHHHHHHHHHHHHhhhCCCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016638          300 GSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKLLTDNKA  374 (385)
Q Consensus       300 ~svp~K~RakRg~at~phsiaERrRReKInerir~Lr~LVP~~~K---q~dKAsILdeAIeYIK~LQ~QVk~L~~~~~  374 (385)
                      ..++.+..+++..++.+|+++||+||++||++|.+|+.|||++.+   +++|++||++||+||++||.+++.|+++..
T Consensus        14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~   91 (118)
T 4ati_A           14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN   91 (118)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567788888889999999999999999999999999998853   489999999999999999999999987643

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.64  E-value=1e-16  Score=128.17  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=59.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMC  378 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~c  378 (385)
                      ..|+++||+||++||++|.+|+.|||+++.+++|++||++||+||++||.+++.|+.+.+.+..
T Consensus         8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~   71 (82)
T 1am9_A            8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999998555999999999999999999999999998877654

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.50  E-value=7.4e-15  Score=116.01  Aligned_cols=56  Identities=14%  Similarity=0.372  Sum_probs=51.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLT  370 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~  370 (385)
                      .+|+++||+||++||++|.+|+.|||....++||++||++||+||+.||.++.=|+
T Consensus        10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B           10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            45899999999999999999999999876559999999999999999999987654

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.47  E-value=1.8e-14  Score=110.69  Aligned_cols=54  Identities=26%  Similarity=0.367  Sum_probs=47.8

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhCCCCCC------CCChHHHHHHHHHHHHHHHHHHH
Q 016638          314 THPRSIAERVRRTRISERMRKLQDLFPNMDK------QTNTAEMLDLAVEHIKDLQKQVK  367 (385)
Q Consensus       314 t~phsiaERrRReKInerir~Lr~LVP~~~K------q~dKAsILdeAIeYIK~LQ~QVk  367 (385)
                      ...|.++||+||++||..|.+|+.|||.+.+      +++||+||+.||+||+.||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            3569999999999999999999999996632      36799999999999999998764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.46  E-value=1.5e-14  Score=110.25  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=49.2

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhhCCCCCC-----CCChHHHHHHHHHHHHHHHHHHH
Q 016638          313 ATHPRSIAERVRRTRISERMRKLQDLFPNMDK-----QTNTAEMLDLAVEHIKDLQKQVK  367 (385)
Q Consensus       313 at~phsiaERrRReKInerir~Lr~LVP~~~K-----q~dKAsILdeAIeYIK~LQ~QVk  367 (385)
                      ....|+++||+||++||+.|.+|+.|||.+..     +++|++||++||+||+.||.+++
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            34569999999999999999999999998862     48999999999999999998753

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.44  E-value=1.2e-13  Score=109.26  Aligned_cols=63  Identities=22%  Similarity=0.367  Sum_probs=57.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNMD-KQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCM  377 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~~-Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~  377 (385)
                      ..|+.+||+||.+||+.|..|+.|||.+. .+++|++||..||+||+.|+.++++|+.+++.++
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~   77 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK   77 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34899999999999999999999999873 2399999999999999999999999999887764

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.43  E-value=1.5e-13  Score=109.06  Aligned_cols=61  Identities=25%  Similarity=0.396  Sum_probs=55.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016638          316 PRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCM  377 (385)
Q Consensus       316 phsiaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~  377 (385)
                      .|+.+||+||++||+.|..|+.+||.+  .| ++|++||.+||+||+.|+.+++.|+.+++.++
T Consensus         5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~   67 (83)
T 1nkp_B            5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLK   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999985  55 89999999999999999999999987776543

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.42  E-value=2.2e-14  Score=113.45  Aligned_cols=50  Identities=26%  Similarity=0.497  Sum_probs=45.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCCC---CCCChHHHHHHHHHHHHHHHH
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNMD---KQTNTAEMLDLAVEHIKDLQK  364 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~~---Kq~dKAsILdeAIeYIK~LQ~  364 (385)
                      ..|+++||+||++||+.|.+|+.|||.+.   .++|||+||+.||+||+.|+.
T Consensus        11 ~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           11 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            45899999999999999999999999873   349999999999999999974

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.39  E-value=4.5e-13  Score=108.67  Aligned_cols=61  Identities=20%  Similarity=0.323  Sum_probs=54.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638          316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC  376 (385)
Q Consensus       316 phsiaERrRReKInerir~Lr~LVP~~~--Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc  376 (385)
                      .|++.||+||++||+.|..|+++||.+.  ++++|++||.+||+||++|+.+++.|..+.+..
T Consensus         9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L   71 (88)
T 1nkp_A            9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL   71 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999863  348999999999999999999999887665443

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.30  E-value=1.3e-12  Score=104.02  Aligned_cols=57  Identities=30%  Similarity=0.320  Sum_probs=49.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKDLQKQVKLLTD  371 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~---~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~  371 (385)
                      ..|+..||+||+.||+.|.+|+.+||.   .+|..+|++||..||+||+.||++|++++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            458999999999999999999999994   455348999999999999999999998764

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.24  E-value=1.4e-11  Score=98.50  Aligned_cols=61  Identities=23%  Similarity=0.276  Sum_probs=54.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638          316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC  376 (385)
Q Consensus       316 phsiaERrRReKInerir~Lr~LVP~~~--Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc  376 (385)
                      .|+..||+||..|++.|.+|+++||.+.  .+++|++||.+||+||+.|+.+++.|..+.+..
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L   66 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999652  238999999999999999999999998876654

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.97  E-value=2.5e-10  Score=89.17  Aligned_cols=52  Identities=21%  Similarity=0.330  Sum_probs=46.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCC-CCCCChHHHHHHHHHHHHHHHHHH
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNM-DKQTNTAEMLDLAVEHIKDLQKQV  366 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~-~Kq~dKAsILdeAIeYIK~LQ~QV  366 (385)
                      ..|+..||+|+..||+.|..|+++||.. +++++|+.||..||+||..|++.+
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3478999999999999999999999964 456999999999999999999865

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.94  E-value=7.4e-10  Score=105.68  Aligned_cols=52  Identities=13%  Similarity=0.395  Sum_probs=42.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQV  366 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QV  366 (385)
                      .+|+++||+||+|||+.|.+|+.|||....++||++||..||.|||.|+...
T Consensus        14 ~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           14 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            4588999999999999999999999955445999999999999999998643

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.84  E-value=4.2e-09  Score=80.29  Aligned_cols=51  Identities=22%  Similarity=0.307  Sum_probs=46.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 016638          317 RSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK  367 (385)
Q Consensus       317 hsiaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk  367 (385)
                      ++.-||+|+..||+.|..|+.+||..  +++++|..+|..||+||+.|++.++
T Consensus         6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            57889999999999999999999965  4569999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.80  E-value=1.6e-09  Score=104.93  Aligned_cols=51  Identities=27%  Similarity=0.441  Sum_probs=45.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhCC----CCCCCCChHHHHHHHHHHHHHHHHH
Q 016638          314 THPRSIAERVRRTRISERMRKLQDLFP----NMDKQTNTAEMLDLAVEHIKDLQKQ  365 (385)
Q Consensus       314 t~phsiaERrRReKInerir~Lr~LVP----~~~Kq~dKAsILdeAIeYIK~LQ~Q  365 (385)
                      +.+|+.+||+||+|||+.|.+|+.|||    ...| +||++||..||.|||.|+..
T Consensus        14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred             cccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence            346999999999999999999999999    4456 99999999999999999843

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.68  E-value=3.1e-08  Score=80.62  Aligned_cols=50  Identities=26%  Similarity=0.458  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhhhCCCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016638          324 RRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKLLTDNK  373 (385)
Q Consensus       324 RReKInerir~Lr~LVP~~~K---q~dKAsILdeAIeYIK~LQ~QVk~L~~~~  373 (385)
                      -|..||++|++|..|||.+..   +++|++||..||+||+.||+.++.+.++.
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e   55 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE   55 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488999999999999997532   48999999999999999999888776544

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.39  E-value=1.9e-07  Score=73.52  Aligned_cols=47  Identities=21%  Similarity=0.303  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHH
Q 016638          318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQK  364 (385)
Q Consensus       318 siaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~  364 (385)
                      +.-||+|...||+-|..||++||..  +++++|..+|..||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            3459999999999999999999965  4569999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.86  E-value=2.7e-05  Score=64.98  Aligned_cols=53  Identities=21%  Similarity=0.306  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016638          321 ERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNK  373 (385)
Q Consensus       321 ERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~  373 (385)
                      ||.|=..||+-|..||.+||..  ++++.|..+|..||+||+.|+..++.-....
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~   87 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPS   87 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            5777788999999999999965  5679999999999999999999887654433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	385
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	3e-13
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	2e-12
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	1e-10
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	4e-10
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	2e-09
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	2e-09
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	2e-09
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	9e-09

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (150), Expect = 3e-13
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 383
           R+ I++++ +L+DL    D + + + +L  A+++IK LQ+    L          N++ 
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKN 59

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 15/67 (22%), Positives = 33/67 (49%)

Query: 309 KRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKL 368
            RG      +  E+  R+ I++++ +L+DL    + + N + +L  A+++I+ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 369 LTDNKAK 375
           L      
Sbjct: 62  LKQENLS 68

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 317 RSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKA 374
            ++ ER RR  +      L+D  P +  +++     +L  A  +I  +Q + + L   + 
Sbjct: 10  HNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69

Query: 375 KCMCPNKQ 382
                 +Q
Sbjct: 70  LLRKRREQ 77

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (127), Expect = 4e-10
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 318 SIAERVRRTRISERMRKLQDLFPNMDKQTN------TAEMLDLAVEHIKDLQKQVK 367
             AE+ RR R++  + +L  L P   KQ N       A  ++ A  +I+ LQ+   
Sbjct: 7   KHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAK 375
           +  E+ RR  +   + KL+ L P      +  T  +L  A  HIK L+   +       +
Sbjct: 6   NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 317 RSIAERVRRTRISERMRKLQDLF-PNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAK 375
            +  ER RR  I +    L+D       ++ + A++LD A E+I+ ++++      +   
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65

Query: 376 CMCPNKQ 382
               N  
Sbjct: 66  LKRQNAL 72

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 318 SIAERVRRTRISERMRKLQDLFP-NMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           ++ ER R ++++E    L+     N +++    E+L  A+ +I+ LQ  ++
Sbjct: 17  TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 9e-09
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 318 SIAERVRRTRISERMRKLQDLFPNM-----DKQTNTAEMLDLAVEHIKDLQKQVK 367
           +  ER RR +I+  + +L  + P+          +   +L  A ++I++L++   
Sbjct: 10  NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	385
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.41
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.41
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.36
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.26

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8e-15  Score=114.20  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=58.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMC  378 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~c  378 (385)
                      ..|+.+||+||++||+.|..|++|||++..+++|++||++||+||+.|+.+++.|..+.+.++.
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~   71 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999998766999999999999999999999999988876543

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.8e-15  Score=109.95  Aligned_cols=57  Identities=25%  Similarity=0.340  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc
Q 016638          325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNK  381 (385)
Q Consensus       325 ReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~c~~~  381 (385)
                      |++||++|.+|++|||++++++|||+||.+||+||++||.++++|+.+...+++...
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~   57 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ   57 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999998766999999999999999999999999999988877653

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-13  Score=106.71  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=55.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016638          316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCM  377 (385)
Q Consensus       316 phsiaERrRReKInerir~Lr~LVP~~~--Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~  377 (385)
                      .|+.+||+||++||+.|.+|+.|||.+.  .+++|++||++||+||+.|+.+++.|..+++.+.
T Consensus         4 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~   67 (79)
T d1nlwa_           4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ   67 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999753  2489999999999999999999999988776554

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=5.8e-14  Score=105.15  Aligned_cols=53  Identities=25%  Similarity=0.388  Sum_probs=46.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCC------CCCCChHHHHHHHHHHHHHHHHHHH
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNM------DKQTNTAEMLDLAVEHIKDLQKQVK  367 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~------~Kq~dKAsILdeAIeYIK~LQ~QVk  367 (385)
                      ..|+++||+||++||+.|..|+.|||.+      +.+++|++||++||+||+.||++|.
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v~   62 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhhc
Confidence            3589999999999999999999999942      3348999999999999999998763

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.2e-14  Score=109.34  Aligned_cols=53  Identities=21%  Similarity=0.323  Sum_probs=47.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCCC-CCCChHHHHHHHHHHHHHHHHHHH
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNMD-KQTNTAEMLDLAVEHIKDLQKQVK  367 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~~-Kq~dKAsILdeAIeYIK~LQ~QVk  367 (385)
                      ..|++.||+||++||+.|.+|+.|||.+. ++++|++||+.||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            34899999999999999999999999863 448999999999999999998774

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.4e-13  Score=105.90  Aligned_cols=61  Identities=23%  Similarity=0.387  Sum_probs=54.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638          316 PRSIAERVRRTRISERMRKLQDLFPNM-DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC  376 (385)
Q Consensus       316 phsiaERrRReKInerir~Lr~LVP~~-~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc  376 (385)
                      .|+.+||+||++||+.|..|++|||.+ +++++|++||..||+||+.|+.++..|..+.+..
T Consensus         5 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   66 (83)
T d1nkpb_           5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999965 3448999999999999999999999998766543

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.9e-13  Score=105.69  Aligned_cols=60  Identities=20%  Similarity=0.337  Sum_probs=53.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016638          316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAK  375 (385)
Q Consensus       316 phsiaERrRReKInerir~Lr~LVP~~~--Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~k  375 (385)
                      .|+.+||+||++||+.|..|++|||+..  ++++|++||..||+||+.|+.+++.|..+.+.
T Consensus         9 ~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~   70 (88)
T d1nkpa_           9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL   70 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999653  34899999999999999999999999876654

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9e-13  Score=99.12  Aligned_cols=52  Identities=21%  Similarity=0.384  Sum_probs=46.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhCCCCC-----CCCChHHHHHHHHHHHHHHHHHH
Q 016638          315 HPRSIAERVRRTRISERMRKLQDLFPNMD-----KQTNTAEMLDLAVEHIKDLQKQV  366 (385)
Q Consensus       315 ~phsiaERrRReKInerir~Lr~LVP~~~-----Kq~dKAsILdeAIeYIK~LQ~QV  366 (385)
                      ..|+++||+||++||+.|.+|+.|||.+.     .+++|++||..||+||+.||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            45999999999999999999999999653     24899999999999999999764