Citrus Sinensis ID: 016644

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHcccccccHHHHHcccccccEEEEcccccccccccccccccEEEcccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccEEEEEEEcccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHcHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEEcHHHHHHHHccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccHHHccccccccccccHHHHHHHHHHcccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
mapkgndvivsDRKLEMILSmkggngeasyannsQAQAIHAQSMLHLLRETLdniqlmeppsetipFALADlgcscgnntLYIVDVIIKHISKryeasgyeppefsaffsdlpsndfntlfqllppigssmeeclasdthrsyfaagvpgsfyrrlfptrsidffhsafslhwlsqvpesaldkrsmaynkGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVClgrtsadptdqggpgilfgtHFQDAWNDLVQEGlitgekrdsfnipvyASSLQEFKEVVEANGsfvinklevfkggsplvvkqpddAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA
Flexible Loop (DISEMBL)
mapkgndvivsdrKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA
Low Complexity Region (SEG)
MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA
Disordered region (IsUnstruct)
****************************************AQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASL***
Disordered Region (DISOPRED)
***********DRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYE*****PPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA
Disordered Region (DISEMBL)
MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA
Disordered Region (DISPRO)
*****NDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
Q9FLN8	386	Indole-3-acetate O-methyl	yes	no	0.987	0.984	0.709	1e-165
Q0J998	404	Indole-3-acetate O-methyl	yes	no	0.987	0.940	0.624	1e-144
Q68CM3	365	Probable caffeine synthas	N/A	no	0.851	0.898	0.348	5e-51
Q9FKR0	361	Probable S-adenosylmethio	no	no	0.875	0.933	0.340	2e-50
Q9SPV4	359	Salicylate O-methyltransf	N/A	no	0.883	0.947	0.365	2e-48
Q9FYZ9	364	Benzoate carboxyl methylt	N/A	no	0.893	0.945	0.335	2e-48
Q9AR07	389	Jasmonate O-methyltransfe	no	no	0.867	0.858	0.380	1e-46
Q9FZN8	369	Caffeine synthase 1 OS=Ca	N/A	no	0.851	0.888	0.348	1e-46
Q9LS10	359	Probable S-adenosylmethio	no	no	0.825	0.885	0.345	2e-46
Q9AVJ9	378	Monomethylxanthine methyl	N/A	no	0.862	0.878	0.346	3e-46

>sp|Q9FLN8|IAMT1_ARATH Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1

 Score =  583 bits (1502), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/389 (70%), Positives = 328/389 (84%), Gaps = 9/389 (2%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQL--- 57
           M  KG++V V + KLE +LSMKGG G+ SYANNSQAQA+HA+SMLHLL ETL+N+ L   
Sbjct: 1   MGSKGDNVAVCNMKLERLLSMKGGKGQDSYANNSQAQAMHARSMLHLLEETLENVHLNSS 60

Query: 58  MEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDF 117
             PP    PF   DLGCS G NT++I+D I+KHISKR++A+G +PPEF+AFFSDLPSNDF
Sbjct: 61  ASPP----PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDF 116

Query: 118 NTLFQLLPPIGSS--MEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS 175
           NTLFQLLPP+ S+  MEECLA+D +RSYF AGVPGSFYRRLFP R+IDFFHSAFSLHWLS
Sbjct: 117 NTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLS 176

Query: 176 QVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLV 235
           QVPES  D+RS AYN+G+V+IHGA E T  AYK+QFQ DLA FL AR+ E+KR G+MFLV
Sbjct: 177 QVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV 236

Query: 236 CLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVV 295
           CLGRTS DPTDQGG G+LFGTHFQDAW+DLV+EGL+  EKRD FNIPVYA SLQ+FKEVV
Sbjct: 237 CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVV 296

Query: 296 EANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELF 355
           +ANGSF I+KL V+KGGSPLVV +PDDA+EVG+A A+SCRSVAGVLV+AHIG++LS +LF
Sbjct: 297 DANGSFAIDKLVVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLF 356

Query: 356 KRVERRGSCYAKELIEQLQFFHIVASLSF 384
            RVE R + +AK+++  LQFFHIVASLSF
Sbjct: 357 SRVESRATSHAKDVLVNLQFFHIVASLSF 385

Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. Required for correct leaf pattern formation. MeIAA seems to be an inactive form of IAA.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 0

>sp|Q0J998|IAMT1_ORYSJ Indole-3-acetate O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=IAMT1 PE=1 SV=1

 Score =  513 bits (1321), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/397 (62%), Positives = 306/397 (77%), Gaps = 17/397 (4%)

Query: 4   KGNDVIVSD------RKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQL 57
           KG +V VS       +KL  +L MKGGNG+ SY NNSQAQA+HA+ MLH L ETLD   +
Sbjct: 9   KGENVTVSAAAAPRMKKLASMLCMKGGNGDGSYLNNSQAQALHARRMLHFLEETLD--AM 66

Query: 58  MEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDF 117
           ME  S    F  ADLGCSCG+N+L+IVDVI++ +S+ YE+ G + PEF  FFSDLPSNDF
Sbjct: 67  MERSSSDKLFTAADLGCSCGSNSLFIVDVIVRRVSEAYESRGRDAPEFQVFFSDLPSNDF 126

Query: 118 NTLFQLLPP----IGSSMEECLASDTH-----RSYFAAGVPGSFYRRLFPTRSIDFFHSA 168
           NTLFQLLPP    +  S+EECLA+        R Y AAGVPG+FY RLFP  SID F S 
Sbjct: 127 NTLFQLLPPLLAPVAGSLEECLAAGEGAATATRPYHAAGVPGTFYGRLFPGESIDVFTST 186

Query: 169 FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKR 228
           FSLHWLSQVPE   D  S AYN G+V++H A E  A AYK+QFQ DLA FL +R++EMKR
Sbjct: 187 FSLHWLSQVPEEVGDSASPAYNGGRVFVHRATEAVAAAYKRQFQADLARFLRSRAREMKR 246

Query: 229 CGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSL 288
            G+MFL CLGR+S DP DQGG G+LFGTHFQDAW+DLVQEG++ GEKRDSFNIPVYA SL
Sbjct: 247 GGAMFLACLGRSSGDPADQGGAGLLFGTHFQDAWDDLVQEGVVEGEKRDSFNIPVYAPSL 306

Query: 289 QEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGD 348
           QEF++VV A+G+F I++LE+ +GGSPLVV +PDDAAEVG+A+ANSC++VAGVLVDAHIG+
Sbjct: 307 QEFRDVVRADGAFAIDRLELVRGGSPLVVDRPDDAAEVGRAMANSCKAVAGVLVDAHIGE 366

Query: 349 QLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA 385
           +   +LF+R+ERR + +A+EL+E++ FFH+V SLS A
Sbjct: 367 RRGAQLFERLERRAARHARELVEKMHFFHVVCSLSLA 403

Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. MeIAA seems to be an inactive form of IAA.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 0

>sp|Q68CM3|TCS2_CAMSI Probable caffeine synthase 2 OS=Camellia sinensis GN=TCS2 PE=2 SV=1

 Score =  202 bits (513), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 186/353 (52%), Gaps = 25/353 (7%)

Query: 13  RKLEMILSMKGGNGEASYANNSQ-AQAIHAQSM--LHLLRETL--DNIQLMEPPSETIPF 67
           ++++  L M  G GE+SYA NS   Q + + +M  L    ETL   +  L++        
Sbjct: 2   KEVKEALFMNKGEGESSYAQNSSFTQTVTSMTMPVLENAVETLFSKDFHLLQA------L 55

Query: 68  ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPP- 126
              DLGC+ G  T  ++  I + + K+      +  E   + +DLP NDFNTLF+ LP  
Sbjct: 56  NAVDLGCAAGPTTFTVISTIKRMMEKKCRELNCQTLELQVYLNDLPGNDFNTLFKGLPSK 115

Query: 127 -IGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKR 185
            +G+  EE        S +  GVPGSF+ RLFP  S+   HS +S+HWL+Q P+    K 
Sbjct: 116 VVGNKCEEV-------SCYVVGVPGSFHGRLFPRNSLHLVHSCYSVHWLTQAPKGLTSKE 168

Query: 186 SMAYNKGKVYIHGANEHTAN-AYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADP 244
            +A NKGK+YI   +      AY  QF  D   FL +RS+E+   G M L+  GR S+DP
Sbjct: 169 GLALNKGKIYISKTSPPVVREAYLSQFHEDFTMFLNSRSQEVVPNGCMVLILRGRLSSDP 228

Query: 245 TDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304
           +D G            A  +LV +GLI  +K D+FN+P Y  SL+E K++VE NGSF I+
Sbjct: 229 SDMG--SCFTWELLAVAIAELVSQGLIDEDKLDTFNVPSYFPSLEEVKDIVERNGSFTID 286

Query: 305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
            +E F+  SP +  Q +D    G+  A   R+    ++    G ++ ++L+++
Sbjct: 287 HMEGFELDSPEM--QENDKWVRGEKFATVARAFTEPIISNQFGHEIMDKLYEK 337

May be involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9FKR0|MT878_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 194/370 (52%), Gaps = 33/370 (8%)

Query: 21  MKGGNGEASYANNSQAQAIHAQSMLHLLRE-TLDNIQLMEPPSETIPFALADLGCSCGNN 79
           M GG+ + SY +NS  Q      +    R+  L+N+ L+        F +AD GCS G N
Sbjct: 10  MSGGDDQHSYIHNSSYQKAGIDGVQEKARQYILENLDLLNMNPNLSTFTIADFGCSIGPN 69

Query: 80  TLY----IVDVI-IKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEEC 134
           T +    I+D++ +KH+ +  E S   P EF  +F+DLP+NDFNTLF+  PP  SS +E 
Sbjct: 70  TFHAVQNIIDIVKLKHLKESQEDSRVAPLEFQVYFNDLPNNDFNTLFRTQPP--SSKQE- 126

Query: 135 LASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKV 194
                   YF+ GVPGSFY R+ P  SI   +++F+ HWLS+VPE   DK S+A+NK  +
Sbjct: 127 --------YFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSLAWNKNYI 178

Query: 195 YIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTD--QGGPGI 252
           + +   E    AYK QF+ D+  FL AR++E+   G M  + LG+   D     +   GI
Sbjct: 179 HCNNLIEEVTEAYKVQFEKDMGVFLKARAEELVPGGLM--ITLGQCLPDGVAMYETWSGI 236

Query: 253 LFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGG 312
           +  T   D   D+   G+ T EK + FN+PVY   + E K  +E N  F I  +E     
Sbjct: 237 VKDT-IGDCLQDMATLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEMME----- 290

Query: 313 SPLVVKQPDDAAEVGQALANSC-RSVAGVLVDAHIGDQLSEELFKRVERRGSCYAK--EL 369
              +V  P +A ++      S  R++   +++ H G  + +ELF++  ++ S +    E 
Sbjct: 291 ---IVSHPLEAVQLSNNFITSMYRAILSTVIERHFGGSVVDELFRQFAKKLSEHPIDFEK 347

Query: 370 IEQLQFFHIV 379
            ++   +HIV
Sbjct: 348 CKKQMVYHIV 357

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SPV4|SAMT_CLABR Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 188/380 (49%), Gaps = 40/380 (10%)

Query: 15  LEMILSMKGGNGEASYANNS--QAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADL 72
           +  +L MKGG GE SYA NS  Q Q I   S+   + E      L    + T   A+ADL
Sbjct: 3   VRQVLHMKGGAGENSYAMNSFIQRQVI---SITKPITEAAIT-ALYSGDTVTTRLAIADL 58

Query: 73  GCSCGNNTLYIVDVIIKHISKRYEASGYE-PPEFSAFFSDLPSNDFNTLFQLLPPIGSSM 131
           GCS G N L+ V  +IK + +  +  G E  PE+  F +DLP NDFN +F+ LP      
Sbjct: 59  GCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP------ 112

Query: 132 EECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNK 191
              + +D     F  GVPGSFY RLFP  ++ F HS++SL WLSQVP        +  NK
Sbjct: 113 ---IENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVP------IGIESNK 163

Query: 192 GKVYI-HGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGP 250
           G +Y+ +   +   NAY KQFQ D A FL  R++E+   G M L  LGR S D       
Sbjct: 164 GNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST--E 221

Query: 251 GILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFK 310
             L       A N +V EGLI  EK D FNIP Y  S  E +  +   GSF+I+ +E  +
Sbjct: 222 CCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE 281

Query: 311 GGSPLVVKQPDDAAEV---GQALANSCRSVAGVLVDAHIGDQLSEELFKR-----VERRG 362
                  K  D    V   G  +A   R+VA  L+  H G+ + E++F R     +ER  
Sbjct: 282 IYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341

Query: 363 SCYAKELIEQLQFFHIVASL 382
                   E+ +F +++ SL
Sbjct: 342 K-------EKTKFINVIVSL 354

Catalyzes the methylation of the free carboxyl end of the plant hormone salicylic acid (SA). Converts SA to SA methyl ester (MSA). The volatile compound MSA is hypothesized to act as an airborne signal that triggers defense responses in uninfected plants. MSA is an important chemoattractant for moth pollinated flowering plants.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 9

>sp|Q9FYZ9|BAMT_ANTMA Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 197/388 (50%), Gaps = 44/388 (11%)

Query: 13  RKLEMILSMK-GGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALAD 71
           + ++ +L M   G+GE SYANNS  Q +     LH+L ETL +I + +       F + D
Sbjct: 2   KVMKKLLCMNIAGDGETSYANNSGLQKVMMSKSLHVLDETLKDI-IGDHVGFPKCFKMMD 60

Query: 72  LGCSCGNNTLYIVDVIIKHISKRY-EASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSS 130
           +GCS G N L ++  II  I   Y E +  E PEF  F +DLP NDFN LF+LL      
Sbjct: 61  MGCSSGPNALLVMSGIINTIEDLYTEKNINELPEFEVFLNDLPDNDFNNLFKLL------ 114

Query: 131 MEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYN 190
                 S  + + F  G+PGSFY RL P +S+ F +S++S+HWLSQVPE   D      N
Sbjct: 115 ------SHENGNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWLSQVPEGLEDN-----N 163

Query: 191 KGKVYIHGAN-EHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGG 249
           +  +Y+   +      AY KQ++ D + FL  R +E+   G M L   GR+  DP+ +  
Sbjct: 164 RQNIYMATESPPEVYKAYAKQYERDFSTFLKLRGEEIVPGGRMVLTFNGRSVEDPSSKDD 223

Query: 250 PGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVF 309
             I   T       D+V EGL+  +   SFNIP+Y+   +E +  + + GSF +++LEVF
Sbjct: 224 LAIF--TLLAKTLVDMVAEGLVKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVF 281

Query: 310 K-------GGSPLVVKQPD--DAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVER 360
           +              + P        G+ +A+  R++   ++ +H G  + + LF +   
Sbjct: 282 RVCWDASDYTDDDDQQDPSIFGKQRSGKFVADCVRAITEPMLASHFGSTIMDLLFGK--- 338

Query: 361 RGSCYAKELIEQL-----QFFHIVASLS 383
               YAK+++E L      +F IV SLS
Sbjct: 339 ----YAKKIVEHLSVENSSYFSIVVSLS 362

Converts benzoic acid into the volatile ester methyl benzoates. This scent, mostly produced in a rhythmical, diurnal manner, attracts the pollinators.

Antirrhinum majus (taxid: 4151)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9AR07|JMT_ARATH Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=3

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 196/363 (53%), Gaps = 29/363 (7%)

Query: 18  ILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNI--QLMEPPSETIPFALADLGCS 75
           +L M  GNGE SYA NS AQ+    +++ L R  +D    +LM   SE     +ADLGCS
Sbjct: 6   VLHMNKGNGETSYAKNSTAQS----NIISLGRRVMDEALKKLMMSNSEISSIGIADLGCS 61

Query: 76  CGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPP----IGSSM 131
            G N+L  +  I+  I           PE     +DLPSNDFN +   LP     + ++ 
Sbjct: 62  SGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPEFYDRVNNNK 121

Query: 132 EECLASDTH-RSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVP--ESALDKRSMA 188
           E          S F + VPGSFY RLFP RS+ F HS+ SLHWLSQVP  E+  + R++ 
Sbjct: 122 EGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCREAEKEDRTIT 181

Query: 189 Y---NKGKVYIHGANEHTAN-AYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADP 244
               N GK+YI   +  +A+ AY  QFQTD   FL +RS+E+   G M L  LGR S DP
Sbjct: 182 ADLENMGKIYISKTSPKSAHKAYALQFQTDFWVFLRSRSEELVPGGRMVLSFLGRRSLDP 241

Query: 245 TDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304
           T +             A   + +EG+I  EK D+FN P YA+S +E K V+E  GSF I+
Sbjct: 242 TTE--ESCYQWELLAQALMSMAKEGIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSID 299

Query: 305 KLEV----FKGGS------PLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEEL 354
           +LE+    ++GGS       LV++   +A   G+ ++N+ R+V   +++   G+ + +EL
Sbjct: 300 RLEISPIDWEGGSISEESYDLVIRSKPEALASGRRVSNTIRAVVEPMLEPTFGENVMDEL 359

Query: 355 FKR 357
           F+R
Sbjct: 360 FER 362

Catalyzes the methylation of jasmonate into methyljasmonate, a plant volatile that acts as an important cellular regulator mediating diverse developmental processes and defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

>sp|Q9FZN8|TCS1_CAMSI Caffeine synthase 1 OS=Camellia sinensis GN=TCS1 PE=1 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 176/350 (50%), Gaps = 22/350 (6%)

Query: 14  KLEMILSMKGGNGEASYANNS---QAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALA 70
           K+  +L M  G GE+SYA NS   Q  A  AQ  L    ETL +               A
Sbjct: 8   KVNEVLFMNRGEGESSYAQNSSFTQQVASMAQPALENAVETLFSRDF-----HLQALNAA 62

Query: 71  DLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPP--IG 128
           DLGC+ G NT  ++  I + + K+      +  E   + +DL  NDFNTLF+ L    IG
Sbjct: 63  DLGCAAGPNTFAVISTIKRMMEKKCRELNCQTLELQVYLNDLFGNDFNTLFKGLSSEVIG 122

Query: 129 SSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMA 188
           +  EE          +  GVPGSF+ RLFP  S+   HS++S+HWL+Q P+    +  +A
Sbjct: 123 NKCEEV-------PCYVMGVPGSFHGRLFPRNSLHLVHSSYSVHWLTQAPKGLTSREGLA 175

Query: 189 YNKGKVYIHGANEHTAN-AYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQ 247
            NKGK+YI   +      AY  QF  D   FL ARS+E+   G M L+  GR  +DP+D 
Sbjct: 176 LNKGKIYISKTSPPVVREAYLSQFHEDFTMFLNARSQEVVPNGCMVLILRGRQCSDPSDM 235

Query: 248 GGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLE 307
                        A  +LV +GLI  +K D+FNIP Y +SL+E K++VE +GSF I+ +E
Sbjct: 236 --QSCFTWELLAMAIAELVSQGLIDEDKLDTFNIPSYFASLEEVKDIVERDGSFTIDHIE 293

Query: 308 VFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
            F   S  V  Q +D    G+      R+    ++    G ++ ++L+ +
Sbjct: 294 GFDLDS--VEMQENDKWVRGEKFTKVVRAFTEPIISNQFGPEIMDKLYDK 341

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 3-N- and 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9LS10|MT810_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 178/353 (50%), Gaps = 35/353 (9%)

Query: 21  MKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNT 80
           M  G+ + SY +NS  Q     S +   R  +     ++  S+   F +AD GCS G NT
Sbjct: 10  MSSGHDQHSYIHNSSYQKAAISSAVEKTRRCIFEKLDLQLSSDFGTFRIADFGCSIGPNT 69

Query: 81  LYIVDVIIKHI-SKRYEAS---GYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLA 136
            ++   II  + SKR E S      P EF  FF+D P+NDFNTLF+  P         L+
Sbjct: 70  FHVAQSIIDTVKSKRLEESTENSLVPLEFQVFFNDQPTNDFNTLFRTQP---------LS 120

Query: 137 SDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYI 196
            +  R YF+ GVPGSFY R+ P  SI   H++++ HWLS+VP++  DK+SMA+NK  +  
Sbjct: 121 PE--REYFSVGVPGSFYGRVLPRNSIHIGHTSYTTHWLSKVPDNVCDKKSMAWNKNYIQC 178

Query: 197 HGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLV--CLGR-TSADPTDQGGPGIL 253
           +   E    AYK QF  D+  FL AR++E+   G M ++  CL    S   T QG     
Sbjct: 179 NNLLEEVTKAYKVQFIKDMEIFLDARAEELVPGGLMIVIGECLPDGVSLYETWQGYVMDT 238

Query: 254 FGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKG-- 311
            G    D   D+ + G+ + EK D F++PVY     E K  +E NGSF I  +E      
Sbjct: 239 IG----DCLMDMAKSGITSEEKIDLFSLPVYFPQFSELKGEIEKNGSFTIELMETTSHPL 294

Query: 312 -GSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGS 363
            G PL              + ++ R+    +++ H GD + +ELF R+ ++ S
Sbjct: 295 EGKPL----------TNDFITSTFRAFLTTIIEKHFGDGVVDELFYRLAKKLS 337

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9AVJ9|MXMT1_COFAR Monomethylxanthine methyltransferase 1 OS=Coffea arabica GN=MXMT1 PE=1 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 179/369 (48%), Gaps = 37/369 (10%)

Query: 14  KLEMILSMKGGNGEASYANNS-------QAQAIHAQSMLHLLRETLDNIQLMEPPSETIP 66
           +L+ +L M  G G+ SYA N+       + +    Q +  LLR  L NI           
Sbjct: 2   ELQEVLHMNEGEGDTSYAKNASYNLALAKVKPFLEQCIRELLRANLPNINKC-------- 53

Query: 67  FALADLGCSCGNNTLYIVDVIIKHISK--RYEASGYEPPEFSAFFSDLPSNDFNTLFQLL 124
             +ADLGC+ G NTL  V  I++ I K  + E +  E P    F +DL  NDFN++F+LL
Sbjct: 54  IKVADLGCASGPNTLLTVRDIVQSIDKVGQEEKNELERPTIQIFLNDLFQNDFNSVFKLL 113

Query: 125 PPIGSSMEECLASDTHR---SYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESA 181
           P     +E+    +  R   S   + +PGSFY RLFP  S+ F HS +S+HWLSQVP   
Sbjct: 114 PSFYRKLEK----ENGRKIGSCLISAMPGSFYGRLFPEESMHFLHSCYSVHWLSQVPSGL 169

Query: 182 LDKRSMAYNKGKVY-IHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRT 240
           + +  +  NKG +Y   G       AY  QF  D   FL   SKE+   G M L C+ + 
Sbjct: 170 VIELGIGANKGSIYSSKGCRPPVQKAYLDQFTKDFTTFLRIHSKELFSRGRMLLTCICKV 229

Query: 241 SADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGS 300
             D  D+  P  L       A NDL+ EGL+  EK DSFNIP +  S +E K +VE  GS
Sbjct: 230 --DEFDEPNPLDLLDM----AINDLIVEGLLEEEKLDSFNIPFFTPSAEEVKCIVEEEGS 283

Query: 301 FVINKLEVFKGGSPLVVKQPDD------AAEVGQALANSCRSVAGVLVDAHIGDQLSEEL 354
             I  LE FK          DD           + +A+  RSV   ++ +H G+ +  +L
Sbjct: 284 CEILYLETFKAHYDAAFSIDDDYPVRSHEQIKAEYVASLIRSVYEPILASHFGEAIMPDL 343

Query: 355 FKRVERRGS 363
           F R+ +  +
Sbjct: 344 FHRLAKHAA 352

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of paraxanthine to caffeine. Has a 5-fold preference for 7mX.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
356552799	391	PREDICTED: indole-3-acetate O-methyltran	0.994	0.979	0.788	0.0
255646264	391	unknown [Glycine max]	0.994	0.979	0.783	0.0
255580766	386	Benzoate carboxyl methyltransferase, put	0.994	0.992	0.796	0.0
356499415	389	PREDICTED: indole-3-acetate O-methyltran	0.994	0.984	0.768	1e-178
356567094	383	PREDICTED: indole-3-acetate O-methyltran	0.981	0.986	0.783	1e-177
224056411	385	S-adenosyl-L-methionine:carboxyl methylt	0.992	0.992	0.780	1e-177
357494717	392	S-adenosyl-L-methionine salicylic acid c	1.0	0.982	0.754	1e-175
449467394	385	PREDICTED: indole-3-acetate O-methyltran	0.992	0.992	0.778	1e-173
357459729	390	S-adenosyl-L-methionine salicylic acid c	1.0	0.987	0.753	1e-172
225460847	387	PREDICTED: indole-3-acetate O-methyltran	0.992	0.987	0.741	1e-171

>gi|356552799|ref|XP_003544750.1| PREDICTED: indole-3-acetate O-methyltransferase 1-like [Glycine max]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/388 (78%), Positives = 347/388 (89%), Gaps = 5/388 (1%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
           MAP G++V+VS+ +LE +LSMKGG GEASYANNSQAQAIHA+SMLHLLRETLD ++++E 
Sbjct: 1   MAPMGDNVVVSNMELEKLLSMKGGKGEASYANNSQAQAIHARSMLHLLRETLDRVEVVE- 59

Query: 61  PSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL 120
               + F +ADLGCSCG+N++ +VDV+IKH+ KRYEA G++PPEFSAFFSDLPSNDFNTL
Sbjct: 60  -GREVAFVVADLGCSCGSNSINVVDVMIKHMMKRYEALGWQPPEFSAFFSDLPSNDFNTL 118

Query: 121 FQLLPPI---GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQV 177
           FQLLPP+   G SMEECLA++ HRSYFAAGVPGSFYRRLFP RS+D FHSAFSLHWLSQV
Sbjct: 119 FQLLPPLANYGVSMEECLAANNHRSYFAAGVPGSFYRRLFPARSVDVFHSAFSLHWLSQV 178

Query: 178 PESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCL 237
           PES  DKRS AYNKG+V+IHGA E TANAYKKQFQTDLA FL ARS EMKR GSMFLVCL
Sbjct: 179 PESVEDKRSSAYNKGRVFIHGAGESTANAYKKQFQTDLAGFLRARSVEMKREGSMFLVCL 238

Query: 238 GRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEA 297
            RTS DPTDQGG G+LFGTHFQDAW+DLVQEGLI+ EKRD FNIPVYA+SLQ+FKEVVEA
Sbjct: 239 ARTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISQEKRDDFNIPVYAASLQDFKEVVEA 298

Query: 298 NGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
           NGSF I+KLEVFKGGSPLVV QPDDA+EVG+ALANSCR+V+GVLVDAHIGD+LSEELF R
Sbjct: 299 NGSFAIDKLEVFKGGSPLVVNQPDDASEVGRALANSCRTVSGVLVDAHIGDKLSEELFLR 358

Query: 358 VERRGSCYAKELIEQLQFFHIVASLSFA 385
           VERR + +AKEL+EQLQFFHIVASLSFA
Sbjct: 359 VERRATSHAKELLEQLQFFHIVASLSFA 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646264|gb|ACU23616.1| unknown [Glycine max]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/388 (78%), Positives = 347/388 (89%), Gaps = 5/388 (1%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
           MAP G++V+VS+ +LE +LSMKGG GEASYANNSQAQAIHA+SMLHLLRETLD ++++E 
Sbjct: 1   MAPMGDNVVVSNMELEKLLSMKGGKGEASYANNSQAQAIHARSMLHLLRETLDRVEVVE- 59

Query: 61  PSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL 120
               + F +ADLGCSCG+N++ +VDV+IKH+ KRYEA G++PPEFSAFFSDLPSNDFNTL
Sbjct: 60  -GREVAFVVADLGCSCGSNSINVVDVMIKHMMKRYEALGWQPPEFSAFFSDLPSNDFNTL 118

Query: 121 FQLLPPI---GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQV 177
           FQLLPP+   G SMEECLA++ HRSYFAAGVPGSFYRRLFP RS+D FHSAFSLHWLSQV
Sbjct: 119 FQLLPPLANYGVSMEECLAANNHRSYFAAGVPGSFYRRLFPARSVDVFHSAFSLHWLSQV 178

Query: 178 PESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCL 237
           PES  D+RS AYNKG+V+IHGA E  ANAYKKQFQTDLA FL ARS EMKR GSMFLVCL
Sbjct: 179 PESVEDRRSSAYNKGRVFIHGAGESAANAYKKQFQTDLAGFLRARSVEMKREGSMFLVCL 238

Query: 238 GRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEA 297
            RTS DPTDQGG G+LFGTHFQDAW+DLVQEGLI+ EKRD+FNIPVYA+SLQ+FKEVVEA
Sbjct: 239 ARTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISQEKRDNFNIPVYAASLQDFKEVVEA 298

Query: 298 NGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
           NGSF I+KLEVFKGGSPLVV QPDDA+EVG+ALANSCR+V+GVLVDAHIGD+LSEELF R
Sbjct: 299 NGSFAIDKLEVFKGGSPLVVNQPDDASEVGRALANSCRTVSGVLVDAHIGDKLSEELFLR 358

Query: 358 VERRGSCYAKELIEQLQFFHIVASLSFA 385
           VERR + +AKEL+EQLQFFHIVASLSFA
Sbjct: 359 VERRATSHAKELLEQLQFFHIVASLSFA 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580766|ref|XP_002531204.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] gi|223529206|gb|EEF31181.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/388 (79%), Positives = 344/388 (88%), Gaps = 5/388 (1%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
           MAP GN+V+VS+ KLE +L MKGG GEASYANNSQAQA+HA+SMLHLL ETLD + L   
Sbjct: 1   MAPIGNNVVVSNLKLEKLLCMKGGKGEASYANNSQAQALHARSMLHLLEETLDKVHLNSW 60

Query: 61  PSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL 120
           P   +PF + DLGCS GNNT+YI+DVIIKH+ KRYE+SG EPPEFSAFFSDLPSNDFNTL
Sbjct: 61  PE--VPFQVVDLGCSSGNNTIYIIDVIIKHMIKRYESSGLEPPEFSAFFSDLPSNDFNTL 118

Query: 121 FQLLPPI---GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQV 177
           FQLLPP+   G SMEECLA+  HR+YFAAGVPGSFYRRLFP+RSID FHSAFSLHWLSQV
Sbjct: 119 FQLLPPLANYGGSMEECLAASGHRNYFAAGVPGSFYRRLFPSRSIDVFHSAFSLHWLSQV 178

Query: 178 PESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCL 237
           PES +DKRS AYNKG+VYIHGA+E TANAYKKQFQTDLA FL ARS+EMKR GSMFLVCL
Sbjct: 179 PESVMDKRSGAYNKGRVYIHGASESTANAYKKQFQTDLAGFLRARSQEMKRGGSMFLVCL 238

Query: 238 GRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEA 297
           GRTS DPTDQGG G+LFGTH+QDAW+DLVQEGLIT EKRDSFNIPVYA SLQ+FK VVEA
Sbjct: 239 GRTSMDPTDQGGAGLLFGTHYQDAWDDLVQEGLITSEKRDSFNIPVYAPSLQDFKYVVEA 298

Query: 298 NGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
           +GSF INKLEVFKGGSPLVV  PDDAAEVG+ALA SCRSV+GVLVDAHIGD+LS+ELF R
Sbjct: 299 DGSFSINKLEVFKGGSPLVVDCPDDAAEVGRALATSCRSVSGVLVDAHIGDRLSDELFLR 358

Query: 358 VERRGSCYAKELIEQLQFFHIVASLSFA 385
           VERR + +AK+L+E+LQFFHIVASLSFA
Sbjct: 359 VERRATSHAKDLLEKLQFFHIVASLSFA 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499415|ref|XP_003518536.1| PREDICTED: indole-3-acetate O-methyltransferase 1-like [Glycine max]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 298/388 (76%), Positives = 342/388 (88%), Gaps = 5/388 (1%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
           MAP GN+V+VS+ KLE +LSMKGG GEASYA NSQAQAIHA+SMLHLLRETLD ++++E 
Sbjct: 1   MAPMGNNVVVSNMKLEKLLSMKGGKGEASYAKNSQAQAIHARSMLHLLRETLDRVEVVEA 60

Query: 61  PSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL 120
             + + F +ADLGCSCG+N++ +VDVIIKH+ KRY+A G++PPEFSAFFSDLPSNDFNTL
Sbjct: 61  -RDGVAFVVADLGCSCGSNSINVVDVIIKHMMKRYQALGWQPPEFSAFFSDLPSNDFNTL 119

Query: 121 FQLLPPIGS----SMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQ 176
           FQLLPP+ +    +MEECLA++ HRSYFAAGVPGSFYRRLFP RS+  FHS FSLHWLSQ
Sbjct: 120 FQLLPPLANYGAVNMEECLAANNHRSYFAAGVPGSFYRRLFPARSVHVFHSTFSLHWLSQ 179

Query: 177 VPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVC 236
           VPE  +DKRS AYNKG+V+IHGA + TANAYKKQFQTDLA FL ARS EMKR GSMFLVC
Sbjct: 180 VPECVVDKRSSAYNKGRVFIHGAGQSTANAYKKQFQTDLAGFLRARSVEMKREGSMFLVC 239

Query: 237 LGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVE 296
           L RTS DPTDQGG G+L GTHFQDAW+DLVQEGLI+ EKRD+FNIPVYA+SLQ+FKEVVE
Sbjct: 240 LARTSVDPTDQGGAGLLVGTHFQDAWDDLVQEGLISQEKRDTFNIPVYAASLQDFKEVVE 299

Query: 297 ANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFK 356
           ANGSF I+KLEVFKGGSPLVV QPDDA+EVG+ALANSCR+V GVLVDAHIGD+LSEELF 
Sbjct: 300 ANGSFTIDKLEVFKGGSPLVVNQPDDASEVGRALANSCRTVCGVLVDAHIGDKLSEELFL 359

Query: 357 RVERRGSCYAKELIEQLQFFHIVASLSF 384
           RVE R + +AKEL+EQLQFFHIVASLSF
Sbjct: 360 RVEHRATMHAKELLEQLQFFHIVASLSF 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567094|ref|XP_003551758.1| PREDICTED: indole-3-acetate O-methyltransferase 1-like [Glycine max]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 301/384 (78%), Positives = 339/384 (88%), Gaps = 6/384 (1%)

Query: 5   GNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSET 64
           G++V+VS+ +LE +LSMKGG GE SYANNSQAQAIHA+SM HLL+E LD +QL  P    
Sbjct: 2   GDNVVVSNMELERLLSMKGGKGEGSYANNSQAQAIHAKSMHHLLKEALDGVQLQAP---N 58

Query: 65  IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL 124
           +PF + DLGCSCG+NT+ +VD+IIKHI KRYEA G +PPEFSAFFSDLPSNDFNTLFQLL
Sbjct: 59  MPFVVVDLGCSCGSNTINVVDLIIKHIIKRYEALGLDPPEFSAFFSDLPSNDFNTLFQLL 118

Query: 125 PPI---GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESA 181
           PP+   G SMEECLA++ HRSYFAAGVPGSFYRRLFP R ID FHSAFSLHWLSQVPES 
Sbjct: 119 PPLANYGVSMEECLAANNHRSYFAAGVPGSFYRRLFPARFIDVFHSAFSLHWLSQVPESV 178

Query: 182 LDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTS 241
           LDKRS AYNKG+V+IHGA+E TANAYK QFQTDLA+FL +R+ E+KR GSMFLVCLGRTS
Sbjct: 179 LDKRSSAYNKGRVFIHGASEITANAYKNQFQTDLASFLRSRAVELKRGGSMFLVCLGRTS 238

Query: 242 ADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF 301
            DPTDQGG G+LFGTHFQDAW+DLVQEGLI+ EKRDSFNIPVYA SLQ+FKEVVEA+GSF
Sbjct: 239 VDPTDQGGAGLLFGTHFQDAWDDLVQEGLISSEKRDSFNIPVYAPSLQDFKEVVEADGSF 298

Query: 302 VINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERR 361
            INKLEVFKGGSPLVV QPDD +EVG+ALANSCRSV+GVLVDAHIGD+LSEELF RVERR
Sbjct: 299 AINKLEVFKGGSPLVVNQPDDDSEVGRALANSCRSVSGVLVDAHIGDKLSEELFLRVERR 358

Query: 362 GSCYAKELIEQLQFFHIVASLSFA 385
            + + KEL+EQLQFFHIVASLSFA
Sbjct: 359 ATSHGKELLEQLQFFHIVASLSFA 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056411|ref|XP_002298843.1| S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Populus trichocarpa] gi|222846101|gb|EEE83648.1| S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Populus trichocarpa]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/388 (78%), Positives = 336/388 (86%), Gaps = 6/388 (1%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
           MAPKG++V+VS  KLE +L MKGG GEASYANNSQAQA+HA+SMLHLL ETLD + L  P
Sbjct: 1   MAPKGDNVVVSSMKLEKLLCMKGGKGEASYANNSQAQALHARSMLHLLEETLDRVHLNSP 60

Query: 61  PSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL 120
                PF +ADLGCS GNNT++I+DVIIKH+ KR+E+SG EPPEFSAFF+DLPSNDFNTL
Sbjct: 61  ---EFPFQVADLGCSSGNNTIHIIDVIIKHMIKRFESSGLEPPEFSAFFADLPSNDFNTL 117

Query: 121 FQLLPP---IGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQV 177
           FQLLPP    G SMEECLA+  HR+YFAAGVPGSF+RRLFP RSID FHSAFSLHWLSQV
Sbjct: 118 FQLLPPPANYGGSMEECLAASGHRNYFAAGVPGSFHRRLFPARSIDVFHSAFSLHWLSQV 177

Query: 178 PESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCL 237
           PE  LDKRS AYNKG+V+IH A+E T NAYKKQFQTDLA FL ARS+EMK  GSMFLVCL
Sbjct: 178 PECVLDKRSAAYNKGRVFIHNASESTTNAYKKQFQTDLAGFLSARSQEMKSGGSMFLVCL 237

Query: 238 GRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEA 297
           GRTSADPTDQGG G+LFGTHFQDAW+DLVQEGLIT EKRD+FNIPVYA SLQ+FKEVVEA
Sbjct: 238 GRTSADPTDQGGAGLLFGTHFQDAWDDLVQEGLITSEKRDNFNIPVYAPSLQDFKEVVEA 297

Query: 298 NGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
           NGSF I+KLEVFKGGSPLVV  PD+ AEV +A+ANSCRSVAGVLVDAHIGD LSEELF R
Sbjct: 298 NGSFTIDKLEVFKGGSPLVVNHPDNEAEVSRAMANSCRSVAGVLVDAHIGDGLSEELFLR 357

Query: 358 VERRGSCYAKELIEQLQFFHIVASLSFA 385
           VE R   +AKEL+E+LQFFHIVASLSFA
Sbjct: 358 VEHRAKSHAKELLEKLQFFHIVASLSFA 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494717|ref|XP_003617647.1| S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase-like protein [Medicago truncatula] gi|355518982|gb|AET00606.1| S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase-like protein [Medicago truncatula]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/391 (75%), Positives = 337/391 (86%), Gaps = 6/391 (1%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
           MAP   +V+VS+ +LE + SMKGG GEASYANNSQAQAIHA+SM+H LRETLD ++L   
Sbjct: 1   MAPMEENVVVSNLELEKLFSMKGGKGEASYANNSQAQAIHAKSMIHFLRETLDKVKLGGG 60

Query: 61  PSETI----PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSND 116
                     F +ADLGCSCG+NT+ +V+VII HI+KRYEA G  PPEFSA+FSDLPSND
Sbjct: 61  GGGGGGGDKAFVVADLGCSCGSNTINVVNVIINHINKRYEALGCNPPEFSAYFSDLPSND 120

Query: 117 FNTLFQLLPPI--GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWL 174
           FNTLFQLLPP+  G SMEECLA+D  RSYF AGVPGSFYRRLFP RS+D FHSAFSLHWL
Sbjct: 121 FNTLFQLLPPLANGVSMEECLAADNQRSYFVAGVPGSFYRRLFPARSVDVFHSAFSLHWL 180

Query: 175 SQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFL 234
           S++PES LDK+S+AYNKGKV+IHGANE TANAYK+QF+TDLA+FL ARS EMKR GSMFL
Sbjct: 181 SKIPESVLDKKSIAYNKGKVFIHGANESTANAYKRQFKTDLASFLSARSVEMKREGSMFL 240

Query: 235 VCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEV 294
           VCLGRTS DPT+QGG G+LFGTHFQDAW+DLVQEGLI+  KRD+FNIPVYA S+Q+FKEV
Sbjct: 241 VCLGRTSVDPTEQGGAGVLFGTHFQDAWDDLVQEGLISSTKRDNFNIPVYAPSMQDFKEV 300

Query: 295 VEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEEL 354
           VEANGSFVINKLEVFKGGSPLV+ +PDDA EVG+ALANSCR+V GVLVDAHIGD LSEEL
Sbjct: 301 VEANGSFVINKLEVFKGGSPLVLNKPDDANEVGRALANSCRTVCGVLVDAHIGDNLSEEL 360

Query: 355 FKRVERRGSCYAKELIEQLQFFHIVASLSFA 385
           F RVERR +  AKEL+E+LQFFHIVASLSF+
Sbjct: 361 FLRVERRATNRAKELLEKLQFFHIVASLSFS 391

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467394|ref|XP_004151408.1| PREDICTED: indole-3-acetate O-methyltransferase 1-like [Cucumis sativus] gi|449482642|ref|XP_004156358.1| PREDICTED: indole-3-acetate O-methyltransferase 1-like [Cucumis sativus]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/388 (77%), Positives = 341/388 (87%), Gaps = 6/388 (1%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
           M PKG++V+VS+ KLE +LSMKGG GE SYANNSQAQA HA+SMLHLL+ETLD + L  P
Sbjct: 1   MTPKGDNVVVSNMKLERMLSMKGGKGETSYANNSQAQAQHARSMLHLLKETLDGVHLNSP 60

Query: 61  PSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL 120
                PF + DLGCSCG+NT+YI+DVIIKHI KR+EA   +PPEF+AFFSDLP NDFNTL
Sbjct: 61  EE---PFVVVDLGCSCGSNTIYIIDVIIKHIIKRFEALAVDPPEFTAFFSDLPGNDFNTL 117

Query: 121 FQLLPPI---GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQV 177
           FQLLPP+   G SMEECLA+D HRSYFAAGVPGSFYRRLFP RSID FHSAFSLHWLSQV
Sbjct: 118 FQLLPPLATYGGSMEECLAADNHRSYFAAGVPGSFYRRLFPARSIDLFHSAFSLHWLSQV 177

Query: 178 PESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCL 237
           PE+ +D RSMAYN+G+V+IHGANE  A AY+KQFQTDLA FL AR++E+KR GSMFLVCL
Sbjct: 178 PETVVDGRSMAYNRGRVFIHGANEAAAEAYRKQFQTDLAGFLWARAQELKRGGSMFLVCL 237

Query: 238 GRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEA 297
           GRTS DPTDQGG G+LFGTHFQDAW+DLVQEGLI+ EKRDSFNIPVYA SLQ+FKEVVEA
Sbjct: 238 GRTSLDPTDQGGAGLLFGTHFQDAWDDLVQEGLISNEKRDSFNIPVYAPSLQDFKEVVEA 297

Query: 298 NGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
           +GSF INKLEVFKGGSPLVV QPDDAAEVG+ALANSCRSV+GVLVDAHIGD+LSEELF R
Sbjct: 298 DGSFSINKLEVFKGGSPLVVNQPDDAAEVGRALANSCRSVSGVLVDAHIGDRLSEELFYR 357

Query: 358 VERRGSCYAKELIEQLQFFHIVASLSFA 385
           VERR + +AK+L+E+LQFFHIVASLS A
Sbjct: 358 VERRATNHAKDLLEKLQFFHIVASLSLA 385

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459729|ref|XP_003600145.1| S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase-like protein [Medicago truncatula] gi|355489193|gb|AES70396.1| S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase-like protein [Medicago truncatula]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 293/389 (75%), Positives = 333/389 (85%), Gaps = 4/389 (1%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
           MAP   +V+VS+ +LE + SMKGG GEASYANNSQAQAIHA+SM+H LRETLD ++L   
Sbjct: 1   MAPMEENVVVSNLELEKLFSMKGGKGEASYANNSQAQAIHAKSMIHFLRETLDKVKLGGG 60

Query: 61  PSETI--PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFN 118
                   F +ADLGCSCG+NT+ +V+VII HI KRYEA G  PPEFSA+FSDLPSNDFN
Sbjct: 61  GGGDGDKAFVVADLGCSCGSNTINVVNVIINHIIKRYEALGCNPPEFSAYFSDLPSNDFN 120

Query: 119 TLFQLLPPI--GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQ 176
           TLFQLLPP+  G SMEECLA+D  RSYF AGVPGSFYRRLFP RS+D FHSAF LHWLS+
Sbjct: 121 TLFQLLPPLANGISMEECLAADNQRSYFVAGVPGSFYRRLFPARSVDVFHSAFCLHWLSK 180

Query: 177 VPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVC 236
           +PES LDK+S AYNKGKV+IHGANE TANAYK+QF+TDLA+FL ARS EMKR GSMFLVC
Sbjct: 181 IPESVLDKKSNAYNKGKVFIHGANESTANAYKRQFKTDLASFLSARSVEMKREGSMFLVC 240

Query: 237 LGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVE 296
           LGRTS DPT+QGG G+LFGTHFQDAW+DLVQEGLI+  KRD+FNIPVYA S+Q+FKEVVE
Sbjct: 241 LGRTSVDPTEQGGAGVLFGTHFQDAWDDLVQEGLISSTKRDNFNIPVYAPSMQDFKEVVE 300

Query: 297 ANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFK 356
           ANGSFVINKLEVFKGGSPLV+ +PDDA EVG+ALANSCR+V GVLVDAHIGD LSEELF 
Sbjct: 301 ANGSFVINKLEVFKGGSPLVLNKPDDANEVGRALANSCRTVCGVLVDAHIGDNLSEELFL 360

Query: 357 RVERRGSCYAKELIEQLQFFHIVASLSFA 385
           RVERR +  AKEL+E+LQ FHIVASLSF+
Sbjct: 361 RVERRATNRAKELLEKLQCFHIVASLSFS 389

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460847|ref|XP_002277167.1| PREDICTED: indole-3-acetate O-methyltransferase 1 [Vitis vinifera] gi|297737501|emb|CBI26702.3| unnamed protein product [Vitis vinifera]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/390 (74%), Positives = 337/390 (86%), Gaps = 8/390 (2%)

Query: 1   MAPKG--NDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLM 58
           MAP+G  N V+V + KLE +  MKGGNGE SYANNSQAQA HA+SMLHLLRETLD +QL 
Sbjct: 1   MAPRGENNIVVVPNMKLEKVFCMKGGNGEGSYANNSQAQARHARSMLHLLRETLDGVQLT 60

Query: 59  EPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFN 118
            P    +PF + DLGCS G+NT++ ++ IIKH+SKRYE +G++PPEFSAFFSDLPSNDFN
Sbjct: 61  SP---EVPFTVVDLGCSSGSNTIFTIETIIKHMSKRYEEAGFKPPEFSAFFSDLPSNDFN 117

Query: 119 TLFQLLPPI---GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS 175
           TLFQLLPPI   G SMEE LA+  HRSYFAA VPGSFY+RLFP RSI+ FHSAFSLHWLS
Sbjct: 118 TLFQLLPPIADPGVSMEEYLAAKGHRSYFAAAVPGSFYKRLFPCRSINLFHSAFSLHWLS 177

Query: 176 QVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLV 235
           QVP+  +DK+S AYN+G+V+IHGANE TA+AYKKQFQ+DL+ FL +R++EM   GSMFLV
Sbjct: 178 QVPDCVVDKQSTAYNEGRVFIHGANEGTASAYKKQFQSDLSGFLRSRAQEMMSGGSMFLV 237

Query: 236 CLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVV 295
           CLGRTS DPTDQGG G+LFGTHFQDAWNDLV EGLIT EKRD+FNIPVYA S+Q+F+EVV
Sbjct: 238 CLGRTSVDPTDQGGAGLLFGTHFQDAWNDLVLEGLITSEKRDNFNIPVYAPSIQDFREVV 297

Query: 296 EANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELF 355
           EANGSF INKLEVFKGGSPLVV QPDD AEVG+ALANSCRSVAGVL+DAHIG++LS+ELF
Sbjct: 298 EANGSFTINKLEVFKGGSPLVVNQPDDEAEVGRALANSCRSVAGVLIDAHIGEELSKELF 357

Query: 356 KRVERRGSCYAKELIEQLQFFHIVASLSFA 385
            RVE +G+ +AKE++EQ+QFFHIVASLSFA
Sbjct: 358 LRVEHKGTSHAKEVLEQIQFFHIVASLSFA 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
TAIR|locus:2161680	386	IAMT1 "AT5G55250" [Arabidopsis	0.994	0.992	0.712	3.8e-149
UNIPROTKB|Q0J998	404	IAMT1 "Indole-3-acetate O-meth	0.987	0.940	0.624	1.9e-129
TAIR|locus:2161008	387	GAMT2 "AT5G56300" [Arabidopsis	0.919	0.914	0.390	1.2e-60
TAIR|locus:2131483	376	GAMT1 "AT4G26420" [Arabidopsis	0.929	0.952	0.378	7.5e-57
TAIR|locus:2013149	389	JMT "jasmonic acid carboxyl me	0.867	0.858	0.380	2.8e-50
TAIR|locus:2166640	361	AT5G38780 [Arabidopsis thalian	0.875	0.933	0.340	6.7e-49
TAIR|locus:2200186	363	AT1G68040 [Arabidopsis thalian	0.838	0.889	0.360	8.5e-49
TAIR|locus:2144466	368	AT5G38020 [Arabidopsis thalian	0.844	0.883	0.370	8.5e-49
TAIR|locus:2095572	368	AT3G21950 [Arabidopsis thalian	0.844	0.883	0.358	1.8e-48
TAIR|locus:2115400	371	AT4G36470 [Arabidopsis thalian	0.927	0.962	0.355	1.8e-48

TAIR|locus:2161680 IAMT1 "AT5G55250" [Arabidopsis thaliana (taxid:3702)]

 Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
 Identities = 275/386 (71%), Positives = 327/386 (84%)

Query:     1 MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
             M  KG++V V + KLE +LSMKGG G+ SYANNSQAQA+HA+SMLHLL ETL+N+ L   
Sbjct:     1 MGSKGDNVAVCNMKLERLLSMKGGKGQDSYANNSQAQAMHARSMLHLLEETLENVHLNSS 60

Query:    61 PSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL 120
              S   PF   DLGCS G NT++I+D I+KHISKR++A+G +PPEF+AFFSDLPSNDFNTL
Sbjct:    61 ASPP-PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTL 119

Query:   121 FQLLPPIGSS--MEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVP 178
             FQLLPP+ S+  MEECLA+D +RSYF AGVPGSFYRRLFP R+IDFFHSAFSLHWLSQVP
Sbjct:   120 FQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVP 179

Query:   179 ESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLG 238
             ES  D+RS AYN+G+V+IHGA E T  AYK+QFQ DLA FL AR+ E+KR G+MFLVCLG
Sbjct:   180 ESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLG 239

Query:   239 RTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEAN 298
             RTS DPTDQGG G+LFGTHFQDAW+DLV+EGL+  EKRD FNIPVYA SLQ+FKEVV+AN
Sbjct:   240 RTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDAN 299

Query:   299 GSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRV 358
             GSF I+KL V+KGGSPLVV +PDDA+EVG+A A+SCRSVAGVLV+AHIG++LS +LF RV
Sbjct:   300 GSFAIDKLVVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRV 359

Query:   359 ERRGSCYAKELIEQLQFFHIVASLSF 384
             E R + +AK+++  LQFFHIVASLSF
Sbjct:   360 ESRATSHAKDVLVNLQFFHIVASLSF 385

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IMP

GO:0051749 "indole acetic acid carboxyl methyltransferase activity" evidence=IDA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q0J998 IAMT1 "Indole-3-acetate O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
 Identities = 248/397 (62%), Positives = 306/397 (77%)

Query:     4 KGNDVIVSD------RKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQL 57
             KG +V VS       +KL  +L MKGGNG+ SY NNSQAQA+HA+ MLH L ETLD   +
Sbjct:     9 KGENVTVSAAAAPRMKKLASMLCMKGGNGDGSYLNNSQAQALHARRMLHFLEETLD--AM 66

Query:    58 MEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDF 117
             ME  S    F  ADLGCSCG+N+L+IVDVI++ +S+ YE+ G + PEF  FFSDLPSNDF
Sbjct:    67 MERSSSDKLFTAADLGCSCGSNSLFIVDVIVRRVSEAYESRGRDAPEFQVFFSDLPSNDF 126

Query:   118 NTLFQLLPP----IGSSMEECLASD-----THRSYFAAGVPGSFYRRLFPTRSIDFFHSA 168
             NTLFQLLPP    +  S+EECLA+        R Y AAGVPG+FY RLFP  SID F S 
Sbjct:   127 NTLFQLLPPLLAPVAGSLEECLAAGEGAATATRPYHAAGVPGTFYGRLFPGESIDVFTST 186

Query:   169 FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKR 228
             FSLHWLSQVPE   D  S AYN G+V++H A E  A AYK+QFQ DLA FL +R++EMKR
Sbjct:   187 FSLHWLSQVPEEVGDSASPAYNGGRVFVHRATEAVAAAYKRQFQADLARFLRSRAREMKR 246

Query:   229 CGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSL 288
              G+MFL CLGR+S DP DQGG G+LFGTHFQDAW+DLVQEG++ GEKRDSFNIPVYA SL
Sbjct:   247 GGAMFLACLGRSSGDPADQGGAGLLFGTHFQDAWDDLVQEGVVEGEKRDSFNIPVYAPSL 306

Query:   289 QEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGD 348
             QEF++VV A+G+F I++LE+ +GGSPLVV +PDDAAEVG+A+ANSC++VAGVLVDAHIG+
Sbjct:   307 QEFRDVVRADGAFAIDRLELVRGGSPLVVDRPDDAAEVGRAMANSCKAVAGVLVDAHIGE 366

Query:   349 QLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA 385
             +   +LF+R+ERR + +A+EL+E++ FFH+V SLS A
Sbjct:   367 RRGAQLFERLERRAARHARELVEKMHFFHVVCSLSLA 403

GO:0010252 "auxin homeostasis" evidence=IC

GO:0051749 "indole acetic acid carboxyl methyltransferase activity" evidence=IDA

TAIR|locus:2161008 GAMT2 "AT5G56300" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 146/374 (39%), Positives = 201/374 (53%)

Query:    15 LEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGC 74
             L  + +M+GG  + SY NNS +QA+       +L  +L +I+L    S+  P  + DLGC
Sbjct:    18 LHRVFAMQGGEDDLSYVNNSDSQALAITLSKPILISSLQSIKLF---SDQTPIKITDLGC 74

Query:    75 SCGNNTLYIVDVIIKHISKRYEA--SGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSME 132
             + G+NT   VD +++ + +RY A   G   PEF AFF DLPSNDFN LF+LL        
Sbjct:    75 ATGSNTFTTVDTVVETLQRRYTARCGGGGSPEFEAFFCDLPSNDFNMLFKLLA------- 127

Query:   133 ECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKG 192
             E    D+   YFA GV GSFY RLFP  +I    S  +LHWLSQ+PE  L+K S  +NKG
Sbjct:   128 EKQKVDSPAKYFAGGVAGSFYDRLFPRGTIHVAVSLSALHWLSQIPEKVLEKESRTWNKG 187

Query:   193 KVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGI 252
             K +I GA +    AY +Q   DL  F+  R +EM + G +F++  GR S   +  G    
Sbjct:   188 KTWIEGAKKEVVEAYAEQSDKDLDDFMSCRKEEMVKGGVLFVLMAGRPSGSSSQFGDQDT 247

Query:   253 L----FGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEV 308
                  F T  + AW DL++EGLI  E RD FNIP Y  S +E    ++  G F I K++ 
Sbjct:   248 RAKHPFTTTMEQAWQDLIEEGLIDEETRDGFNIPAYMRSPEEVTAGIDRCGGFKIGKMDF 307

Query:   309 FKGGSPLVVKQPD---DAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCY 365
              K       KQ +   D    G+A  N  ++    +VDA++G  LS ELFKR E R S  
Sbjct:   308 LKIVEYSDEKQEEWKKDPVSYGRARTNLVQAAIRPMVDAYLGPDLSHELFKRYENRVSTN 367

Query:   366 AKELIEQLQFFHIV 379
              +E +    F+ +V
Sbjct:   368 -QEFLHITCFYGVV 380

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0010341 "gibberellin carboxyl-O-methyltransferase activity" evidence=IDA

TAIR|locus:2131483 GAMT1 "AT4G26420" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 144/380 (37%), Positives = 204/380 (53%)

Query:    11 SDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALA 70
             S R LE +LSM+GG  +ASY  N    A        +L   +++I+L E  S  +   +A
Sbjct:     3 SSRSLEHVLSMQGGEDDASYVKNCYGPAARLALSKPMLTTAINSIKLTEGCSSHLK--IA 60

Query:    71 DLGCSCGNNTLYIVDVIIKHISKRYEA--SGYEPP-EFSAFFSDLPSNDFNTLFQLLPPI 127
             DLGC+ G+NT   V+ +++ + K+      G EP  EF  FFSDL SNDFN LF+     
Sbjct:    61 DLGCAIGDNTFSTVETVVEVLGKKLAVIDGGTEPEMEFEVFFSDLSSNDFNALFR----- 115

Query:   128 GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM 187
               S++E + + + R YFAAGVPGSFY+RLFP   +    +  +L WLSQVPE  ++K S 
Sbjct:   116 --SLDEKV-NGSSRKYFAAGVPGSFYKRLFPKGELHVVVTMSALQWLSQVPEKVMEKGSK 172

Query:   188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQ 247
             ++NKG V+I GA +    AY +Q   DL  FL  R +E+   G +F++  GR S      
Sbjct:   173 SWNKGGVWIEGAEKEVVEAYAEQADKDLVEFLKCRKEEIVVGGVLFMLMGGRPSGSVNQI 232

Query:   248 GGPGIL----FGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI 303
             G P       F T    AW DLV EGLI  EKRD FNIPVY  + +E    ++  G F I
Sbjct:   233 GDPDSSLKHPFTTLMDQAWQDLVDEGLIEEEKRDGFNIPVYFRTTEEIAAAIDRCGGFKI 292

Query:   304 NKLEVFKGGSPLVVKQPD---DAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVER 360
              K E       +  KQ +   D    G+  AN  ++    +V A++G  L+ +LFKR   
Sbjct:   293 EKTENLIIADHMNGKQEELMKDPDSYGRDRANYAQAGLKPIVQAYLGPDLTHKLFKRYAV 352

Query:   361 RGSCYAKELIEQLQFFHIVA 380
             R +   KE++    F+H++A
Sbjct:   353 RAAA-DKEILNNC-FYHMIA 370

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IDA

GO:0010341 "gibberellin carboxyl-O-methyltransferase activity" evidence=IDA

TAIR|locus:2013149 JMT "jasmonic acid carboxyl methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 138/363 (38%), Positives = 196/363 (53%)

Query:    18 ILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNI--QLMEPPSETIPFALADLGCS 75
             +L M  GNGE SYA NS AQ+    +++ L R  +D    +LM   SE     +ADLGCS
Sbjct:     6 VLHMNKGNGETSYAKNSTAQS----NIISLGRRVMDEALKKLMMSNSEISSIGIADLGCS 61

Query:    76 CGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPP----IGSSM 131
              G N+L  +  I+  I           PE     +DLPSNDFN +   LP     + ++ 
Sbjct:    62 SGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPEFYDRVNNNK 121

Query:   132 EEC-LASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVP--ESALDKRSMA 188
             E          S F + VPGSFY RLFP RS+ F HS+ SLHWLSQVP  E+  + R++ 
Sbjct:   122 EGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCREAEKEDRTIT 181

Query:   189 Y---NKGKVYIHGANEHTAN-AYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADP 244
                 N GK+YI   +  +A+ AY  QFQTD   FL +RS+E+   G M L  LGR S DP
Sbjct:   182 ADLENMGKIYISKTSPKSAHKAYALQFQTDFWVFLRSRSEELVPGGRMVLSFLGRRSLDP 241

Query:   245 TDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304
             T +             A   + +EG+I  EK D+FN P YA+S +E K V+E  GSF I+
Sbjct:   242 TTE--ESCYQWELLAQALMSMAKEGIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSID 299

Query:   305 KLEV----FKGGS------PLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEEL 354
             +LE+    ++GGS       LV++   +A   G+ ++N+ R+V   +++   G+ + +EL
Sbjct:   300 RLEISPIDWEGGSISEESYDLVIRSKPEALASGRRVSNTIRAVVEPMLEPTFGENVMDEL 359

Query:   355 FKR 357
             F+R
Sbjct:   360 FER 362

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009694 "jasmonic acid metabolic process" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0030795 "jasmonate O-methyltransferase activity" evidence=IMP;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2166640 AT5G38780 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 126/370 (34%), Positives = 194/370 (52%)

Query:    21 MKGGNGEASYANNSQAQAIHAQSMLHLLRE-TLDNIQLMEPPSETIPFALADLGCSCGNN 79
             M GG+ + SY +NS  Q      +    R+  L+N+ L+        F +AD GCS G N
Sbjct:    10 MSGGDDQHSYIHNSSYQKAGIDGVQEKARQYILENLDLLNMNPNLSTFTIADFGCSIGPN 69

Query:    80 TLY----IVDVI-IKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEEC 134
             T +    I+D++ +KH+ +  E S   P EF  +F+DLP+NDFNTLF+  PP  SS +E 
Sbjct:    70 TFHAVQNIIDIVKLKHLKESQEDSRVAPLEFQVYFNDLPNNDFNTLFRTQPP--SSKQE- 126

Query:   135 LASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKV 194
                     YF+ GVPGSFY R+ P  SI   +++F+ HWLS+VPE   DK S+A+NK  +
Sbjct:   127 --------YFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSLAWNKNYI 178

Query:   195 YIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTD--QGGPGI 252
             + +   E    AYK QF+ D+  FL AR++E+   G M  + LG+   D     +   GI
Sbjct:   179 HCNNLIEEVTEAYKVQFEKDMGVFLKARAEELVPGGLM--ITLGQCLPDGVAMYETWSGI 236

Query:   253 LFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGG 312
             +  T   D   D+   G+ T EK + FN+PVY   + E K  +E N  F I  +E+    
Sbjct:   237 VKDT-IGDCLQDMATLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEMMEI---- 291

Query:   313 SPLVVKQPDDAAEVGQALANSC-RSVAGVLVDAHIGDQLSEELFKRVERRGSCYAK--EL 369
                 V  P +A ++      S  R++   +++ H G  + +ELF++  ++ S +    E 
Sbjct:   292 ----VSHPLEAVQLSNNFITSMYRAILSTVIERHFGGSVVDELFRQFAKKLSEHPIDFEK 347

Query:   370 IEQLQFFHIV 379
              ++   +HIV
Sbjct:   348 CKKQMVYHIV 357

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2200186 AT1G68040 [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 128/355 (36%), Positives = 187/355 (52%)

Query:    14 KLEMI---LSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETI----- 65
             K+E++   L M GG+G  SY+ NS  Q    +    LL+E +D + L +  ++T+     
Sbjct:     3 KVEIVRNSLPMSGGDGPNSYSKNSHLQ----RKTTSLLKEKIDKLVLEKLNAKTLISSDS 58

Query:    66 -PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL 124
               F +ADLGC+ G NT ++VD IIK I      S    PEF  FF+DLP NDFNTLF  L
Sbjct:    59 NTFRIADLGCATGPNTFFLVDNIIKSIETSLRKSNSSKPEFLVFFNDLPQNDFNTLFTSL 118

Query:   125 PPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDK 184
             P            D  RSY A GVPGSFY R+ P  S+    +  + HWLS VP+  LDK
Sbjct:   119 P-----------QD--RSYLAVGVPGSFYGRVLPQSSVHIVVTMGATHWLSSVPKEVLDK 165

Query:   185 RSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADP 244
              S A+NKGKV+   A +    AY+ QF  D+  FL AR+ E+   G + +   G     P
Sbjct:   166 SSKAWNKGKVHYSNAADEVVKAYRDQFGRDMEKFLEARATEIVSGGLLVVGMCGIPKGMP 225

Query:   245 TDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304
                    I++ T   D    +  EGLI+ E+ D+FNIP+Y+++ +E   +V  NG F + 
Sbjct:   226 FSNLADSIMY-TSMADVLTQMHSEGLISEEQVDTFNIPIYSATPEEVTVLVVKNGCFTVE 284

Query:   305 KLEVFKGGSPLVVKQPDDAAEVGQALANSC-RSVAGVLVDAHIGDQLSEELFKRV 358
              +E+    + L  K+P +  +V   +   C ++  G L   H G+ L +++F R+
Sbjct:   285 SMELMDPTAWL--KRPTNVEDVRHWMV--CIKATMGSLFINHFGEHLLDDVFDRL 335

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2144466 AT5G38020 [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 131/354 (37%), Positives = 183/354 (51%)

Query:    18 ILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCG 77
             +LSMKGG+GE SYANNS+ Q   A     ++ ET+  + +       I   +ADLGCS G
Sbjct:     3 VLSMKGGDGEHSYANNSEGQKRLASDAKPVVVETVKEMIVKTDFPGCIK--VADLGCSSG 60

Query:    78 NNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLAS 137
              NTL ++  I+  I   Y+  G   PE +   +DLP NDFNT F+L+P    +  + L  
Sbjct:    61 ENTLLVMSEIVNTIITSYQQKGKNLPEINCCLNDLPDNDFNTTFKLVP----AFHKLLKM 116

Query:   138 DTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIH 197
             D     F +GVPGSFY RLFP++S+ F HS+  LHWLS+VP+   D      NK  VY+ 
Sbjct:   117 DVKGKCFISGVPGSFYSRLFPSKSLHFVHSSLCLHWLSKVPDGLED------NKKNVYLR 170

Query:   198 G-ANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGT 256
                  +   +Y  QF+ D + FL  R+ E    G M L  +GR S DP  +        +
Sbjct:   171 SPCPPNVYKSYLTQFKNDFSLFLRLRADETVPNGRMALTFVGRKSLDPLSKDC--FQNWS 228

Query:   257 HFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEV-------F 309
                D+  DLV EG++     DSFN+P Y     E +EV+E+ GSF I+  E        +
Sbjct:   229 SISDSLLDLVSEGIVKESDVDSFNLPFYNPDESEVREVIESEGSFKISNFETIFGLLFSY 288

Query:   310 KGGSPLVVKQPDDAA------EVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
             K G    VK  DD        EV +  A+  RS+   ++ AH GD + + LF+R
Sbjct:   289 KTGRT-EVKDDDDNLDQSCRFEVIRKRASIIRSITEPMLGAHFGDAIMDRLFER 341

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2095572 AT3G21950 [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 127/354 (35%), Positives = 187/354 (52%)

Query:    18 ILSMKGGNGEASYANNSQAQ-AIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSC 76
             ++SMKGG+GE SYANNS+AQ +I + +   +++   + I  M+ P       +ADLGCS 
Sbjct:     3 VVSMKGGDGEHSYANNSEAQKSITSDAKPEVMKSVNEMIVKMDFPG---CIKVADLGCSS 59

Query:    77 GNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLA 136
             G NT  ++  I+  I   Y+ +G   PE     +DLP NDFNT F+L+P    S  E L 
Sbjct:    60 GENTFLVMSEIVNTIITTYQQNGQNLPEIDCCLNDLPENDFNTTFKLIP----SFHEKLK 115

Query:   137 SDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYI 196
              +   + + +G PGSFY RLFP++S+ F HS+F LHWLS+VP+  L++     NK  VY+
Sbjct:   116 MNVKGNCYVSGCPGSFYTRLFPSKSLHFVHSSFCLHWLSKVPDG-LEE-----NKKNVYL 169

Query:   197 HG-ANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFG 255
                   +   +Y  QF+ D + FL  R++E    G M L  +GR + DP  +        
Sbjct:   170 RSPCPPNLYESYWNQFKKDFSMFLRMRAEETMPSGRMALTLVGRKTLDPLSK--ECFKDW 227

Query:   256 THFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEV------- 308
             +   D+  DLV EG++     +SFN+P Y+    E KEV+E  GSF I   E        
Sbjct:   228 SLVSDSLLDLVSEGVVKESDLESFNLPYYSPDESEVKEVIENEGSFEIKNFETIFGLLFS 287

Query:   309 FKGGSPLVVKQPDDAA-----EVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
             +K G   V    DD       EV +  AN  RS+   ++ AH G+ + + LF +
Sbjct:   288 YKTGHSEVKDDDDDVDHSRRFEVVKTRANMTRSIIEPMLVAHFGEAIIDRLFDK 341

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2115400 AT4G36470 [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 131/369 (35%), Positives = 190/369 (51%)

Query:    12 DRK-LEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALA 70
             D+K +E    M GG+G+ SYA NS  Q   + +  H+  ETL  +     P       +A
Sbjct:     2 DKKDMEREFYMTGGDGKTSYARNSSLQKKASDTAKHITLETLQQLYKETRPKS---LGIA 58

Query:    71 DLGCSCGNNTLYIVDVIIKHISKRYEAS-GYEP-PEFSAFFSDLPSNDFNTLFQLLPPIG 128
             DLGCS G NTL  +   IK +   +      +P PEFS F +DLP NDFN +F+ LP   
Sbjct:    59 DLGCSSGPNTLSTITDFIKTVQVAHHREIPIQPLPEFSIFLNDLPGNDFNFIFKSLPDFH 118

Query:   129 SSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMA 188
               ++    +    S F A  PGSFY RLFP  +I F +++ SLHWLS+VP +  D++  +
Sbjct:   119 IELKRDNNNGDCPSVFIAAYPGSFYGRLFPENTIHFVYASHSLHWLSKVPTALYDEQGKS 178

Query:   189 YNKGKVYIHG-ANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQ 247
              NKG V I   ++E  + AY  QF+ D + FL  RSKEM   G M L+ LGR   D  D+
Sbjct:   179 INKGCVSICSLSSEAVSKAYCSQFKEDFSIFLRCRSKEMVSAGRMVLIILGREGPDHVDR 238

Query:   248 GGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLE 307
             G     F      +  DLV +G    EK DS+++  YA S  E +  V+  GSF + +LE
Sbjct:   239 GNS--FFWELLSRSIADLVAQGETEEEKLDSYDMHFYAPSADEIEGEVDKEGSFELERLE 296

Query:   308 VFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERR-GSCYA 366
             + +        + D     G+A+A + R+V   ++  H G+++ ++LF    R      A
Sbjct:   297 MLEVKKDKGNTEGD--ISYGKAVAKTVRAVQESMLVQHFGEKILDKLFDTYCRMVDDELA 354

Query:   367 KELIEQLQF 375
             KE I  + F
Sbjct:   355 KEDIRPITF 363

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLN8	IAMT1_ARATH	2, ., 1, ., 1, ., n, 1, 0	0.7095	0.9870	0.9844	yes	no
Q0J998	IAMT1_ORYSJ	2, ., 1, ., 1, ., n, 1, 0	0.6246	0.9870	0.9405	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	385
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	0.0
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	1e-133

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score =  707 bits (1825), Expect = 0.0
 Identities = 303/388 (78%), Positives = 344/388 (88%), Gaps = 5/388 (1%)

Query: 1   MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEP 60
           MAPKG++V+VS+ KLE +L MKGG GE SYANNSQAQA+HA+SMLHLL ETLDN+ L   
Sbjct: 1   MAPKGDNVVVSNMKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSS 60

Query: 61  PSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL 120
           P   +PF   DLGCS G+NT++I+DVI+KH+SKRYE++G +PPEFSAFFSDLPSNDFNTL
Sbjct: 61  PE--VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTL 118

Query: 121 FQLLPPI---GSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQV 177
           FQLLPP+   G SMEECLA+  HRSYFAAGVPGSFYRRLFP RSID FHSAFSLHWLSQV
Sbjct: 119 FQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQV 178

Query: 178 PESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCL 237
           PES  DKRS AYNKG+V+IHGA+E TANAYK+QFQ DLA FL AR++EMKR G+MFLVCL
Sbjct: 179 PESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238

Query: 238 GRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEA 297
           GRTS DPTDQGG G+LFGTHFQDAW+DLVQEGL+T EKRDSFNIPVYA SLQ+FKEVVEA
Sbjct: 239 GRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEA 298

Query: 298 NGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKR 357
           NGSF I+KLEVFKGGSPLVV +PDDAAEVG+A+ANSCRSVAGVLVDAHIG++LS ELF R
Sbjct: 299 NGSFAIDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLR 358

Query: 358 VERRGSCYAKELIEQLQFFHIVASLSFA 385
           VERR + +AKEL+E+LQFFHIVASLSFA
Sbjct: 359 VERRATSHAKELLEKLQFFHIVASLSFA 386

Length = 386

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score =  383 bits (985), Expect = e-133
 Identities = 149/325 (45%), Positives = 194/325 (59%), Gaps = 17/325 (5%)

Query: 66  PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGY-EPPEFSAFFSDLPSNDFNTLFQLL 124
              +ADLGCS G NT   V  II  + K+Y+     EPPEF  FF+DLPSNDFNTLF+LL
Sbjct: 17  SIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVFFNDLPSNDFNTLFKLL 76

Query: 125 PPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDK 184
           PP              RSYF +GVPGSFY RLFP  S+ F HS++SLHWLSQVP+   DK
Sbjct: 77  PP---------FQKKKRSYFVSGVPGSFYGRLFPRNSLHFVHSSYSLHWLSQVPKGLEDK 127

Query: 185 RSMAYNKGKVYIHGA-NEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSAD 243
            S A+NKG +YI GA  E    AY  QF+ D + FL AR++E+   G M L  LGR S D
Sbjct: 128 ESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSGGLMVLTFLGRPSVD 187

Query: 244 PTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI 303
           P++      +F     DA NDLV EGLI  EK DSFNIP+YA S +E KE++E  GSF I
Sbjct: 188 PSETE--CGIFWDLLGDALNDLVSEGLIEEEKLDSFNIPIYAPSPEEVKEIIEKEGSFTI 245

Query: 304 NKLEVFKGGSPLVVKQP---DDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVER 360
            +LE+ K  +  V       +D  E G+ +A+S R+V   ++ AH G+ + ++LF R  +
Sbjct: 246 ERLEIIKHPNGEVPWDESDSEDKVEDGRFVASSVRAVVEPMLVAHFGEDIMDKLFDRYAK 305

Query: 361 R-GSCYAKELIEQLQFFHIVASLSF 384
           +     +KEL    +  ++V SLS 
Sbjct: 306 KLSEHLSKELQNAKKTINVVVSLSR 330

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
PLN02668	386	indole-3-acetate carboxyl methyltransferase	100.0
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	100.0
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.57
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.54
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.46
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.37
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.2
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.16
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.11
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.1
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.04
PLN02336	475	phosphoethanolamine N-methyltransferase	99.02
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.99
PLN02244	340	tocopherol O-methyltransferase	98.95
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.88
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.87
PRK08317	241	hypothetical protein; Provisional	98.85
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.81
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.78
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.75
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.71
KOG2940	325	consensus Predicted methyltransferase [General fun	98.7
PLN02490	340	MPBQ/MSBQ methyltransferase	98.7
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.67
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.66
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.64
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.6
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.6
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.59
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.57
PRK06202	232	hypothetical protein; Provisional	98.53
PRK11207	197	tellurite resistance protein TehB; Provisional	98.53
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.5
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.5
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.41
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.38
KOG3010	261	consensus Methyltransferase [General function pred	98.32
PRK06922	677	hypothetical protein; Provisional	98.31
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.3
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.29
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.25
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.25
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.23
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.22
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.19
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.17
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.17
PRK05785	226	hypothetical protein; Provisional	98.16
TIGR03438	301	probable methyltransferase. This model represents	98.15
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.14
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.14
PRK12335	287	tellurite resistance protein TehB; Provisional	98.13
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.13
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.13
PLN02336	475	phosphoethanolamine N-methyltransferase	98.06
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.04
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.02
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.01
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.0
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.0
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.99
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.96
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.94
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.87
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.85
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.83
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.81
PHA03411	279	putative methyltransferase; Provisional	97.77
KOG2361	264	consensus Predicted methyltransferase [General fun	97.74
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.71
PRK14967	223	putative methyltransferase; Provisional	97.7
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.66
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.65
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.65
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.65
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.63
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.62
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.57
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.55
COG4123	248	Predicted O-methyltransferase [General function pr	97.52
PRK04266	226	fibrillarin; Provisional	97.52
PTZ00146	293	fibrillarin; Provisional	97.51
TIGR00438	188	rrmJ cell division protein FtsJ.	97.5
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.5
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.49
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.48
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.48
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.47
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.46
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.46
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.42
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.39
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.36
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.35
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.32
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.3
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.21
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.18
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.07
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.94
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.94
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.93
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.86
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.81
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.81
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.78
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.77
KOG4300	252	consensus Predicted methyltransferase [General fun	96.66
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.63
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	96.62
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	96.52
PRK00811	283	spermidine synthase; Provisional	96.47
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.43
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.39
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.39
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.37
PRK14968	188	putative methyltransferase; Provisional	96.36
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	96.35
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.31
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.3
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.25
PLN03075	296	nicotianamine synthase; Provisional	96.11
PRK04457	262	spermidine synthase; Provisional	96.1
COG2890	280	HemK Methylase of polypeptide chain release factor	95.98
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	95.96
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.89
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	95.82
KOG2904	328	consensus Predicted methyltransferase [General fun	95.75
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	95.73
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	95.61
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.26
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.19
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	95.19
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.18
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	95.1
PRK03612	521	spermidine synthase; Provisional	95.01
PLN02366	308	spermidine synthase	94.99
PRK07402	196	precorrin-6B methylase; Provisional	94.86
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	94.84
KOG1331	293	consensus Predicted methyltransferase [General fun	94.76
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	94.73
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	94.5
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	94.31
PLN02672	1082	methionine S-methyltransferase	94.16
PRK13256	226	thiopurine S-methyltransferase; Reviewed	93.48
PHA03412	241	putative methyltransferase; Provisional	93.16
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.0
PRK01581	374	speE spermidine synthase; Validated	92.94
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	92.87
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	92.66
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	92.45
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	92.38
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	91.79
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	91.71
KOG2899	288	consensus Predicted methyltransferase [General fun	91.51
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	90.85
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	90.55
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	90.54
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	90.51
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	89.96
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	89.88
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	89.54
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	88.87
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	88.61
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	87.19
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	87.1
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	86.9
PF13679	141	Methyltransf_32: Methyltransferase domain	86.38
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	86.2
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	85.86
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	84.84
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	84.38
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	84.04
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	83.96
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	83.03
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	82.57

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=100.00  E-value=8.3e-105  Score=790.00  Aligned_cols=383  Identities=78%  Similarity=1.243  Sum_probs=344.4

Q ss_pred             CCCCCCCceecccchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcch
Q 016644            1 MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNT   80 (385)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NS   80 (385)
                      |+|||+.+.++.|+++++|||+||+|++||++||.+|++++..++|+|+++|++++...+  +.++++|||||||+|+||
T Consensus         1 ~~~~~~~~~~~~m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~--p~~~~~iaDlGcs~G~nt   78 (386)
T PLN02668          1 MAPKGDNVVVSNMKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSS--PEVPFTAVDLGCSSGSNT   78 (386)
T ss_pred             CCCCCCccceecceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--CCcceeEEEecCCCCccH
Confidence            899999999999999999999999999999999999999999999999999988854211  125899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCc---hhHhhhcCcCCceeeccccCccccccC
Q 016644           81 LYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSS---MEECLASDTHRSYFAAGVPGSFYRRLF  157 (385)
Q Consensus        81 l~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~---~~~~~~~~~~~~~f~~~vpgSFy~rLf  157 (385)
                      +.++++||++|+++|.+.+.++||+||||||||+||||+||++|+.++++   .++|++....++||++|||||||+|||
T Consensus        79 l~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLf  158 (386)
T PLN02668         79 IHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLF  158 (386)
T ss_pred             HHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCcccccccc
Confidence            99999999999999998777889999999999999999999999987654   233333333457999999999999999


Q ss_pred             CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEec
Q 016644          158 PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       158 P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  237 (385)
                      |++|+||+||++||||||++|+.+.|+.++.||||+||+++++|.|.+||++||++||..||++||+||+|||+||++++
T Consensus       159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~  238 (386)
T PLN02668        159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL  238 (386)
T ss_pred             CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcc
Q 016644          238 GRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVV  317 (385)
Q Consensus       238 g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~  317 (385)
                      ||++.++..+++.+..|+..+.++|++||.||+|++||+|+||+|+|+||++||+++|+++|+|+|+++|+|+..++...
T Consensus       239 Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~  318 (386)
T PLN02668        239 GRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVV  318 (386)
T ss_pred             cCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccc
Confidence            99877666554344445323899999999999999999999999999999999999999999999999999996655434


Q ss_pred             cCCCchhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhchhHhhhcccceEEEEEEEeeC
Q 016644          318 KQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA  385 (385)
Q Consensus       318 ~~~~d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~  385 (385)
                      +.+.|+.+.++.+|+++||++||++++|||++|+|+||+||+++++++.....++++++++++||.++
T Consensus       319 ~~~~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~sL~~~  386 (386)
T PLN02668        319 NEPDDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELLEKLQFFHIVASLSFA  386 (386)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEecC
Confidence            44567778899999999999999999999999999999999999999844323789999999999874

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=100.00  E-value=1.3e-89  Score=677.29  Aligned_cols=324  Identities=45%  Similarity=0.749  Sum_probs=264.1

Q ss_pred             HHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcC-CCCCceeEEecCCCCCchHHHHhcCCC
Q 016644           48 LRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASG-YEPPEFSAFFSDLPSNDFNTLFQLLPP  126 (385)
Q Consensus        48 l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~-~~~p~~qv~~nDLp~NDFn~lF~~l~~  126 (385)
                      |++||.+++...  ..+++++|||||||+|+||+.+++.||++|+++|.+.+ +++|+|||||||||+||||+||++|+.
T Consensus         1 ~~~ai~~~~~~~--~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~   78 (334)
T PF03492_consen    1 LEEAIKELYNSS--NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPS   78 (334)
T ss_dssp             -HHHHHHHHHST--TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHH
T ss_pred             ChHHHHHHHhcC--CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChh
Confidence            578888887532  34689999999999999999999999999999998876 788999999999999999999999986


Q ss_pred             CCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCH-HHHH
Q 016644          127 IGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANE-HTAN  205 (385)
Q Consensus       127 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~-~v~~  205 (385)
                      +.+   ++.   +.++||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||++.++| +|.+
T Consensus        79 ~~~---~~~---~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~  152 (334)
T PF03492_consen   79 FQQ---SLK---KFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAK  152 (334)
T ss_dssp             HHH---HHH---HTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHH
T ss_pred             hhh---ccC---CCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHH
Confidence            422   222   267999999999999999999999999999999999999999999999999999999996555 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccccc
Q 016644          206 AYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYA  285 (385)
Q Consensus       206 ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~  285 (385)
                      ||++||++||.+||++||+||+|||+||++++||++..+...+ .+ ..+++|.++|++||.||+|+++++|+||+|+|+
T Consensus       153 ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~-~~-~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~  230 (334)
T PF03492_consen  153 AYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTG-SC-MLWDLLADALRDMVAEGLISEEKVDSFNIPIYF  230 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTT-CC-CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB-
T ss_pred             HHHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCC-cc-hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccC
Confidence            9999999999999999999999999999999999985554432 22 344899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCceEecEEEEEeCCCCCccc---CCCchhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHh
Q 016644          286 SSLQEFKEVVEANGSFVINKLEVFKGGSPLVVK---QPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRG  362 (385)
Q Consensus       286 ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~---~~~d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~  362 (385)
                      ||++||+++|+++|+|+|+++|.++.+++....   ...|..++|+.+++++|||+||++.+|||++|+|+||+||++++
T Consensus       231 ps~eEv~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v  310 (334)
T PF03492_consen  231 PSPEEVRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKV  310 (334)
T ss_dssp             --HHHHHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            999999999999999999999999844332211   23456789999999999999999999999999999999999999


Q ss_pred             hchhHhhhcc---cceEEEEEEEe
Q 016644          363 SCYAKELIEQ---LQFFHIVASLS  383 (385)
Q Consensus       363 ~~~~~~~~~~---~~~~~~~~~l~  383 (385)
                      ++++.  .++   .++++++++|+
T Consensus       311 ~~~~~--~~~~~~~~~~~i~~~L~  332 (334)
T PF03492_consen  311 AEHLE--KEKSRNMKFVNIVVSLT  332 (334)
T ss_dssp             HHHHH--HTHTT-BEEEEEEEEEE
T ss_pred             HHHHH--HhhccCCCcEEEEEEEe
Confidence            99943  444   88999999996

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.57  E-value=1.4e-13  Score=131.10  Aligned_cols=225  Identities=14%  Similarity=0.119  Sum_probs=141.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644           28 ASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA  107 (385)
Q Consensus        28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv  107 (385)
                      ..|.+++..|.+.+..++..+..             ....+|+|+|||+|..+..+..        ++       |..+|
T Consensus         5 ~~y~~~~~~~~~~~~~ll~~l~~-------------~~~~~vLDlGcG~G~~~~~l~~--------~~-------p~~~v   56 (255)
T PRK14103          5 DVYLAFADHRGRPFYDLLARVGA-------------ERARRVVDLGCGPGNLTRYLAR--------RW-------PGAVI   56 (255)
T ss_pred             HHHHHHHhHhhCHHHHHHHhCCC-------------CCCCEEEEEcCCCCHHHHHHHH--------HC-------CCCEE
Confidence            57999999998766554443321             2457999999999988776642        22       45688


Q ss_pred             EecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhccccc
Q 016644          108 FFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM  187 (385)
Q Consensus       108 ~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~  187 (385)
                      +.-|+-.+..... +..                +--|.   .+++ +.+.|++++|+|+|+.++||+.+.+..+      
T Consensus        57 ~gvD~s~~~~~~a-~~~----------------~~~~~---~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~~~l------  109 (255)
T PRK14103         57 EALDSSPEMVAAA-RER----------------GVDAR---TGDV-RDWKPKPDTDVVVSNAALQWVPEHADLL------  109 (255)
T ss_pred             EEEECCHHHHHHH-Hhc----------------CCcEE---EcCh-hhCCCCCCceEEEEehhhhhCCCHHHHH------
Confidence            9999754332221 110                01122   2353 5667789999999999999987533332      


Q ss_pred             ccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH
Q 016644          188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ  267 (385)
Q Consensus       188 ~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~  267 (385)
                                                      +.-++.|+|||+|++.+.+...          ..    ....+..+..
T Consensus       110 --------------------------------~~~~~~LkpgG~l~~~~~~~~~----------~~----~~~~~~~~~~  143 (255)
T PRK14103        110 --------------------------------VRWVDELAPGSWIAVQVPGNFD----------AP----SHAAVRALAR  143 (255)
T ss_pred             --------------------------------HHHHHhCCCCcEEEEEcCCCcC----------Ch----hHHHHHHHhc
Confidence                                            4457889999999998765311          00    0111222221


Q ss_pred             cCCcccc-cccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhh-hhhHHhh
Q 016644          268 EGLITGE-KRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVA-GVLVDAH  345 (385)
Q Consensus       268 eG~i~~e-~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~-ep~l~~h  345 (385)
                      ++..... .-..+..+..+.+++++...+++.| |++...+.... .++     .    ....+..|+++.. .++++ .
T Consensus       144 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~-~~~-----~----~~~~~~~~~~~~~~~~~~~-~  211 (255)
T PRK14103        144 REPWAKLLRDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYV-HQL-----T----GEDPVLDWITGTALRPVRE-R  211 (255)
T ss_pred             cCchhHHhcccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeee-eeC-----C----Cchhhhhhhhccchhhhhh-h
Confidence            1111100 0011234556789999999999999 98765554221 011     1    2356777888654 67777 9


Q ss_pred             hChHHHHHHHHHHHHHhhch
Q 016644          346 IGDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       346 fg~~i~delf~r~~~~~~~~  365 (385)
                      ++++..+++.+.+.+.+++.
T Consensus       212 l~~~~~~~~~~~~~~~l~~~  231 (255)
T PRK14103        212 LSDDSWEQFRAELIPLLREA  231 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            99998999999999988876

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.54  E-value=2.6e-13  Score=129.19  Aligned_cols=227  Identities=15%  Similarity=0.174  Sum_probs=141.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644           28 ASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA  107 (385)
Q Consensus        28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv  107 (385)
                      ..|.+++..|.+....++..+.       .      .+..+|+|+|||+|..+..+...        +       |..+|
T Consensus         7 ~~Y~~~~~~~~~~~~~ll~~~~-------~------~~~~~vLDiGcG~G~~~~~la~~--------~-------~~~~v   58 (258)
T PRK01683          7 SLYLKFEDERTRPARDLLARVP-------L------ENPRYVVDLGCGPGNSTELLVER--------W-------PAARI   58 (258)
T ss_pred             HHHHHHHHHhhcHHHHHHhhCC-------C------cCCCEEEEEcccCCHHHHHHHHH--------C-------CCCEE
Confidence            5799999888766555443321       1      23578999999999998777532        2       45789


Q ss_pred             EecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhccccc
Q 016644          108 FFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM  187 (385)
Q Consensus       108 ~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~  187 (385)
                      +..|+........-+.++.               .-|.   .+++ ..+.|++++|+++|+.++||+.+.+.        
T Consensus        59 ~gvD~s~~~i~~a~~~~~~---------------~~~~---~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~~--------  111 (258)
T PRK01683         59 TGIDSSPAMLAEARSRLPD---------------CQFV---EADI-ASWQPPQALDLIFANASLQWLPDHLE--------  111 (258)
T ss_pred             EEEECCHHHHHHHHHhCCC---------------CeEE---ECch-hccCCCCCccEEEEccChhhCCCHHH--------
Confidence            9999865443333222221               1122   2343 34567789999999999999865332        


Q ss_pred             ccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH
Q 016644          188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ  267 (385)
Q Consensus       188 ~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~  267 (385)
                                                    +|+.-.+.|+|||++++++.+...          ..    ....++++..
T Consensus       112 ------------------------------~l~~~~~~LkpgG~~~~~~~~~~~----------~~----~~~~~~~~~~  147 (258)
T PRK01683        112 ------------------------------LFPRLVSLLAPGGVLAVQMPDNLD----------EP----SHVLMREVAE  147 (258)
T ss_pred             ------------------------------HHHHHHHhcCCCcEEEEECCCCCC----------CH----HHHHHHHHHc
Confidence                                          335567899999999998643210          00    1122233322


Q ss_pred             cCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhh-hhhHHhhh
Q 016644          268 EGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVA-GVLVDAHI  346 (385)
Q Consensus       268 eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~-ep~l~~hf  346 (385)
                      .......-...-..+.++++++++...+...| +.++..+... ..++  .       ....+..|+++.. .+++. ++
T Consensus       148 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-~~~~--~-------~~~~~~~~~~~~~~~~~~~-~l  215 (258)
T PRK01683        148 NGPWEQNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTY-YHPM--P-------SAQAIVEWVKGTGLRPFLD-PL  215 (258)
T ss_pred             cCchHHHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeee-eeec--C-------CchhhhhhhhhccHHHHHh-hC
Confidence            11111100011113457789999999999999 6554433321 1122  1       2366777888754 67765 99


Q ss_pred             ChHHHHHHHHHHHHHhhch
Q 016644          347 GDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       347 g~~i~delf~r~~~~~~~~  365 (385)
                      +++..+++.++|.+.+.+.
T Consensus       216 ~~~~~~~f~~~~~~~~~~~  234 (258)
T PRK01683        216 TESEQAAFLAAYLARIAEA  234 (258)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988876

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.46  E-value=1.9e-12  Score=122.91  Aligned_cols=179  Identities=15%  Similarity=0.197  Sum_probs=120.5

Q ss_pred             ecccchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHH
Q 016644           10 VSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIK   89 (385)
Q Consensus        10 ~~~~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~   89 (385)
                      .++-.|++.|....    .+|++++.+|+.+...+...+..             ...-+|+|+|||+|.++..+.     
T Consensus         4 ~~k~~i~~~F~~aa----~~Y~~~~~~q~~~a~~l~~~l~~-------------~~~~~vLDiGcG~G~~~~~l~-----   61 (251)
T PRK10258          4 VNKQAIAAAFGRAA----AHYEQHAELQRQSADALLAMLPQ-------------RKFTHVLDAGCGPGWMSRYWR-----   61 (251)
T ss_pred             cCHHHHHHHHHHHH----HhHhHHHHHHHHHHHHHHHhcCc-------------cCCCeEEEeeCCCCHHHHHHH-----
Confidence            44556888999888    69999999999988888766542             134679999999998776553     


Q ss_pred             HHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEccc
Q 016644           90 HISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAF  169 (385)
Q Consensus        90 ~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~  169 (385)
                         +         ...+++..|+-...-...-+..+               ...|+.   +++-.--+|++++|+|+|+.
T Consensus        62 ---~---------~~~~v~~~D~s~~~l~~a~~~~~---------------~~~~~~---~d~~~~~~~~~~fD~V~s~~  111 (251)
T PRK10258         62 ---E---------RGSQVTALDLSPPMLAQARQKDA---------------ADHYLA---GDIESLPLATATFDLAWSNL  111 (251)
T ss_pred             ---H---------cCCeEEEEECCHHHHHHHHhhCC---------------CCCEEE---cCcccCcCCCCcEEEEEECc
Confidence               1         12578889985433332222211               011222   34333237889999999999


Q ss_pred             ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCC
Q 016644          170 SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGG  249 (385)
Q Consensus       170 alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~  249 (385)
                      ++||+.+.+..+                                      ..-.+-|+|||+++++.++.++        
T Consensus       112 ~l~~~~d~~~~l--------------------------------------~~~~~~Lk~gG~l~~~~~~~~~--------  145 (251)
T PRK10258        112 AVQWCGNLSTAL--------------------------------------RELYRVVRPGGVVAFTTLVQGS--------  145 (251)
T ss_pred             hhhhcCCHHHHH--------------------------------------HHHHHHcCCCeEEEEEeCCCCc--------
Confidence            999987644433                                      4467899999999999988742        


Q ss_pred             CccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          250 PGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       250 ~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                         .  .-+.++|..+-.           .....-+++.+|+...+...+ +++
T Consensus       146 ---~--~el~~~~~~~~~-----------~~~~~~~~~~~~l~~~l~~~~-~~~  182 (251)
T PRK10258        146 ---L--PELHQAWQAVDE-----------RPHANRFLPPDAIEQALNGWR-YQH  182 (251)
T ss_pred             ---h--HHHHHHHHHhcc-----------CCccccCCCHHHHHHHHHhCC-cee
Confidence               1  225666654311           112345778999999998766 543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.37  E-value=8.4e-12  Score=116.08  Aligned_cols=216  Identities=17%  Similarity=0.238  Sum_probs=138.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644           28 ASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA  107 (385)
Q Consensus        28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv  107 (385)
                      .+|++.+..|+.+...+.+.+....          ..++.+|+|+|||+|..+..+....               |..++
T Consensus         7 ~~y~~~~~~q~~~~~~l~~~~~~~~----------~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~~~   61 (240)
T TIGR02072         7 KTYDRHAKIQREMAKRLLALLKEKG----------IFIPASVLDIGCGTGYLTRALLKRF---------------PQAEF   61 (240)
T ss_pred             hchhHHHHHHHHHHHHHHHHhhhhc----------cCCCCeEEEECCCccHHHHHHHHhC---------------CCCcE
Confidence            6899999999998888888776421          1245789999999999887765322               45678


Q ss_pred             EecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhccccc
Q 016644          108 FFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM  187 (385)
Q Consensus       108 ~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~  187 (385)
                      +..|+.....+...+.+++              +-.|+   -+++.+..+|++++|+++++.++||+.+..         
T Consensus        62 ~~~D~~~~~~~~~~~~~~~--------------~~~~~---~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~---------  115 (240)
T TIGR02072        62 IALDISAGMLAQAKTKLSE--------------NVQFI---CGDAEKLPLEDSSFDLIVSNLALQWCDDLS---------  115 (240)
T ss_pred             EEEeChHHHHHHHHHhcCC--------------CCeEE---ecchhhCCCCCCceeEEEEhhhhhhccCHH---------
Confidence            8999865555444443331              11122   235555557899999999999999985532         


Q ss_pred             ccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH
Q 016644          188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ  267 (385)
Q Consensus       188 ~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~  267 (385)
                                                   .+|....+-|+|||++++..++...            + ..+...+..   
T Consensus       116 -----------------------------~~l~~~~~~L~~~G~l~~~~~~~~~------------~-~~~~~~~~~---  150 (240)
T TIGR02072       116 -----------------------------QALSELARVLKPGGLLAFSTFGPGT------------L-HELRQSFGQ---  150 (240)
T ss_pred             -----------------------------HHHHHHHHHcCCCcEEEEEeCCccC------------H-HHHHHHHHH---
Confidence                                         2446678999999999998766531            1 112333221   


Q ss_pred             cCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhhhHH-hhh
Q 016644          268 EGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVD-AHI  346 (385)
Q Consensus       268 eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep~l~-~hf  346 (385)
                                   ....+++.+++...+.+.  |....++...-.    ...+     ....+..++|........ .+.
T Consensus       151 -------------~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~----~~~~-----~~~~~~~~l~~~g~~~~~~~~~  206 (240)
T TIGR02072       151 -------------HGLRYLSLDELKALLKNS--FELLTLEEELIT----LSFD-----DPLDVLRHLKKTGANGLSSGRT  206 (240)
T ss_pred             -------------hccCCCCHHHHHHHHHHh--cCCcEEEEEEEE----EeCC-----CHHHHHHHHHHhccCcCCCCCC
Confidence                         123467888999888775  776665544311    1112     235677777776653332 235


Q ss_pred             ChHHHHHHHHHHHHHhh
Q 016644          347 GDQLSEELFKRVERRGS  363 (385)
Q Consensus       347 g~~i~delf~r~~~~~~  363 (385)
                      +.+...++.+.|.+...
T Consensus       207 ~~~~~~~~~~~~~~~~~  223 (240)
T TIGR02072       207 SRKQLKAFLERYEQEFQ  223 (240)
T ss_pred             CHHHHHHHHHHHHHhhc
Confidence            66666677776665553

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.20  E-value=2.4e-10  Score=104.94  Aligned_cols=203  Identities=15%  Similarity=0.187  Sum_probs=139.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      .+-+|.|||||.|+-|.++.        +++       |..++.--|-..-+.......||+.               -|
T Consensus        30 ~~~~v~DLGCGpGnsTelL~--------~Rw-------P~A~i~GiDsS~~Mla~Aa~rlp~~---------------~f   79 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLA--------RRW-------PDAVITGIDSSPAMLAKAAQRLPDA---------------TF   79 (257)
T ss_pred             ccceeeecCCCCCHHHHHHH--------HhC-------CCCeEeeccCCHHHHHHHHHhCCCC---------------ce
Confidence            57899999999999999887        666       7788888887776777776667641               01


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .-|   + ....-|....|++||+.+||||.+.|..+.                                      .--.
T Consensus        80 ~~a---D-l~~w~p~~~~dllfaNAvlqWlpdH~~ll~--------------------------------------rL~~  117 (257)
T COG4106          80 EEA---D-LRTWKPEQPTDLLFANAVLQWLPDHPELLP--------------------------------------RLVS  117 (257)
T ss_pred             ecc---c-HhhcCCCCccchhhhhhhhhhccccHHHHH--------------------------------------HHHH
Confidence            111   2 356689999999999999999999887762                                      2357


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccc-cccccCCHHHHHHHHHhcCceEe
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFN-IPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~-~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +|.|||.|.+.+++--.              +--..++++.++++-... ++.++. .----+++.-|-.++...+ -+|
T Consensus       118 ~L~Pgg~LAVQmPdN~d--------------epsH~~mr~~A~~~p~~~-~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rv  181 (257)
T COG4106         118 QLAPGGVLAVQMPDNLD--------------EPSHRLMRETADEAPFAQ-ELGGRGLTRAPLPSPAAYYELLAPLA-CRV  181 (257)
T ss_pred             hhCCCceEEEECCCccC--------------chhHHHHHHHHhcCchhh-hhCccccccCCCCCHHHHHHHhCccc-cee
Confidence            89999999999976521              112334444444332211 111111 1223468888888887765 333


Q ss_pred             cEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhh-hhHHhhhChHHHHHHHHHHHHHhhchh
Q 016644          304 NKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAG-VLVDAHIGDQLSEELFKRVERRGSCYA  366 (385)
Q Consensus       304 ~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~e-p~l~~hfg~~i~delf~r~~~~~~~~~  366 (385)
                      +--++.-     ..+.+     .++.+..|+++..- |+++ .++++-...+.++|..++++++
T Consensus       182 DiW~T~Y-----~h~l~-----~a~aIvdWvkgTgLrP~L~-~L~e~~~~~FL~~Y~~~l~~aY  234 (257)
T COG4106         182 DIWHTTY-----YHQLP-----GADAIVDWVKGTGLRPYLD-RLDEEERQRFLDRYLALLAEAY  234 (257)
T ss_pred             eeeeeec-----cccCC-----Cccchhhheeccccceecc-ccCHHHHHHHHHHHHHHHHHhC
Confidence            2222211     11222     45789999998875 8887 8999999999999999999874

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.16  E-value=3.2e-10  Score=107.02  Aligned_cols=201  Identities=13%  Similarity=0.219  Sum_probs=128.2

Q ss_pred             ccchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHH
Q 016644           12 DRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHI   91 (385)
Q Consensus        12 ~~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i   91 (385)
                      ...|+++|+-..    ..|+....+=.-.+.  .-+-++.+..+..      ++..+|||+|||||.-|+.+...+    
T Consensus        10 ~~~v~~vF~~ia----~~YD~~n~~~S~g~~--~~Wr~~~i~~~~~------~~g~~vLDva~GTGd~a~~~~k~~----   73 (238)
T COG2226          10 QEKVQKVFDKVA----KKYDLMNDLMSFGLH--RLWRRALISLLGI------KPGDKVLDVACGTGDMALLLAKSV----   73 (238)
T ss_pred             HHHHHHHHHhhH----HHHHhhcccccCcch--HHHHHHHHHhhCC------CCCCEEEEecCCccHHHHHHHHhc----
Confidence            356788888877    688876621111111  1223333333321      246999999999999999987443    


Q ss_pred             HHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCcccccc-CCCCcccEEEcccc
Q 016644           92 SKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRL-FPTRSIDFFHSAFS  170 (385)
Q Consensus        92 ~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rL-fP~~Svd~~~Ss~a  170 (385)
                                 +.-+|+.-|...++.+..-+.+...          +...--|+.|   + .++| ||++|+|++.+++.
T Consensus        74 -----------g~g~v~~~D~s~~ML~~a~~k~~~~----------~~~~i~fv~~---d-Ae~LPf~D~sFD~vt~~fg  128 (238)
T COG2226          74 -----------GTGEVVGLDISESMLEVAREKLKKK----------GVQNVEFVVG---D-AENLPFPDNSFDAVTISFG  128 (238)
T ss_pred             -----------CCceEEEEECCHHHHHHHHHHhhcc----------CccceEEEEe---c-hhhCCCCCCccCEEEeeeh
Confidence                       3578999999888888776655431          0011124444   6 5666 99999999999999


Q ss_pred             cccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCC
Q 016644          171 LHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGP  250 (385)
Q Consensus       171 lHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~  250 (385)
                      ||++.+.+..|.+                                      -+|.|||||++++.=+.+.....      
T Consensus       129 lrnv~d~~~aL~E--------------------------------------~~RVlKpgG~~~vle~~~p~~~~------  164 (238)
T COG2226         129 LRNVTDIDKALKE--------------------------------------MYRVLKPGGRLLVLEFSKPDNPV------  164 (238)
T ss_pred             hhcCCCHHHHHHH--------------------------------------HHHhhcCCeEEEEEEcCCCCchh------
Confidence            9999998888743                                      68999999999888877752211      


Q ss_pred             ccchHHHHHHHHHHHHH------cCCccccccccc----ccccccCCHHHHHHHHHhcCceEecE
Q 016644          251 GILFGTHFQDAWNDLVQ------EGLITGEKRDSF----NIPVYASSLQEFKEVVEANGSFVINK  305 (385)
Q Consensus       251 ~~~~~~~l~~al~~mv~------eG~i~~e~~d~f----~~P~y~ps~~Ev~~~le~~gsF~i~~  305 (385)
                             +..++..+--      -|.+-.+..+.+    ...-.+|+.+++...+++.| |+...
T Consensus       165 -------~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~  221 (238)
T COG2226         165 -------LRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR  221 (238)
T ss_pred             -------hHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence                   1111111111      111111111111    23346899999999999999 87555

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.11  E-value=9.6e-10  Score=105.52  Aligned_cols=209  Identities=13%  Similarity=0.182  Sum_probs=117.7

Q ss_pred             CceecccchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHH
Q 016644            7 DVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDV   86 (385)
Q Consensus         7 ~~~~~~~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~   86 (385)
                      |+..---.++..|.-.+    ..|++....+.........  +..++.+..      .+..+|+|+|||+|..+..+.. 
T Consensus        27 ~~~~~~~~v~~~f~~~A----~~YD~~~~~~s~g~~~~~r--~~~~~~~~~------~~~~~VLDlGcGtG~~~~~la~-   93 (261)
T PLN02233         27 DVVKCANERQALFNRIA----PVYDNLNDLLSLGQHRIWK--RMAVSWSGA------KMGDRVLDLCCGSGDLAFLLSE-   93 (261)
T ss_pred             ChhhhHHHHHHHHHHhh----hHHHHhhhhhcCChhHHHH--HHHHHHhCC------CCCCEEEEECCcCCHHHHHHHH-
Confidence            55444445677888777    6899755554322222111  111111211      2357899999999998766542 


Q ss_pred             HHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-eeccccCcccccc-CCCCcccE
Q 016644           87 IIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-FAAGVPGSFYRRL-FPTRSIDF  164 (385)
Q Consensus        87 ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~~~vpgSFy~rL-fP~~Svd~  164 (385)
                             .+      .|.-+|+--|+-.++....-+..+..        ......++ |+.+   + .+.+ +|++++|+
T Consensus        94 -------~~------~~~~~V~gvD~S~~ml~~A~~r~~~~--------~~~~~~~i~~~~~---d-~~~lp~~~~sfD~  148 (261)
T PLN02233         94 -------KV------GSDGKVMGLDFSSEQLAVAASRQELK--------AKSCYKNIEWIEG---D-ATDLPFDDCYFDA  148 (261)
T ss_pred             -------Hh------CCCCEEEEEECCHHHHHHHHHHhhhh--------hhccCCCeEEEEc---c-cccCCCCCCCEeE
Confidence                   22      13468899998776655543322200        00001122 3333   4 3445 88999999


Q ss_pred             EEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCC
Q 016644          165 FHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADP  244 (385)
Q Consensus       165 ~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~  244 (385)
                      +++++++||+.+....                                      |+.-++.|+|||++++.-+++.+.  
T Consensus       149 V~~~~~l~~~~d~~~~--------------------------------------l~ei~rvLkpGG~l~i~d~~~~~~--  188 (261)
T PLN02233        149 ITMGYGLRNVVDRLKA--------------------------------------MQEMYRVLKPGSRVSILDFNKSTQ--  188 (261)
T ss_pred             EEEecccccCCCHHHH--------------------------------------HHHHHHHcCcCcEEEEEECCCCCc--
Confidence            9999999998653333                                      355688999999999998876421  


Q ss_pred             CCCCCCccchHHHHHHHHHH-----HH-HcCCcccccccccc-cc---cccCCHHHHHHHHHhcCceEecEEE
Q 016644          245 TDQGGPGILFGTHFQDAWND-----LV-QEGLITGEKRDSFN-IP---VYASSLQEFKEVVEANGSFVINKLE  307 (385)
Q Consensus       245 ~~~~~~~~~~~~~l~~al~~-----mv-~eG~i~~e~~d~f~-~P---~y~ps~~Ev~~~le~~gsF~i~~le  307 (385)
                              .+...+..-+..     +. ..|.     .+.+. ++   -.+++.+|+.+.+++.| |++.+..
T Consensus       189 --------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~  247 (261)
T PLN02233        189 --------PFTTSMQEWMIDNVVVPVATGYGL-----AKEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHY  247 (261)
T ss_pred             --------HHHHHHHHHHHhhhhhHHHHHhCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEE
Confidence                    010111111111     10 0121     01110 01   23889999999999999 9865443

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.10  E-value=8.8e-09  Score=98.97  Aligned_cols=194  Identities=13%  Similarity=0.110  Sum_probs=114.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.        +.+        ..+|+..|+..+.....-+....            ..+..|
T Consensus        52 ~~~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~~~~~a~~~~~~------------~~~i~~  103 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEKMVNIAKLRNSD------------KNKIEF  103 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHHHHHHHHHHcCc------------CCceEE
Confidence            45789999999999887664        111        35788999865544433332221            011123


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                         +.+++...-+|++++|+|+|..++++++.                                    .|...+|+.-++
T Consensus       104 ---~~~D~~~~~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r  144 (263)
T PTZ00098        104 ---EANDILKKDFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYK  144 (263)
T ss_pred             ---EECCcccCCCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHH
Confidence               33466555589999999999888766531                                    123345567789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|+++-......         ..+    ...+.......            ....++++++...+++.| |++.
T Consensus       145 ~LkPGG~lvi~d~~~~~~---------~~~----~~~~~~~~~~~------------~~~~~~~~~~~~~l~~aG-F~~v  198 (263)
T PTZ00098        145 WLKPNGILLITDYCADKI---------ENW----DEEFKAYIKKR------------KYTLIPIQEYGDLIKSCN-FQNV  198 (263)
T ss_pred             HcCCCcEEEEEEeccccc---------cCc----HHHHHHHHHhc------------CCCCCCHHHHHHHHHHCC-CCee
Confidence            999999999987655321         011    12222222111            123579999999999999 8865


Q ss_pred             EEEEEeCCCCCcccCCCchhhhHHHHH---HHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhch
Q 016644          305 KLEVFKGGSPLVVKQPDDAAEVGQALA---NSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       305 ~le~~~~~~~~~~~~~~d~~~~~~~~a---~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~  365 (385)
                      ..+...       +      .....+.   ..+++--+. +.+.+|++..+.+-.-+...+...
T Consensus       199 ~~~d~~-------~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  248 (263)
T PTZ00098        199 VAKDIS-------D------YWLELLQVELKKLEEKKEE-FLKLYSEKEYNSLKDGWTRKIKDT  248 (263)
T ss_pred             eEEeCc-------H------HHHHHHHHHHHHHHHhHHH-HHHhcCHHHHHHHHHHHHHHHHHh
Confidence            554321       0      0111122   122222223 334688887777777777666654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.04  E-value=2.7e-09  Score=99.68  Aligned_cols=211  Identities=13%  Similarity=0.161  Sum_probs=116.1

Q ss_pred             cchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHH
Q 016644           13 RKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHIS   92 (385)
Q Consensus        13 ~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~   92 (385)
                      +++.+.|+..+    ..|+.....  -.......+.++.+..+..      .+..+|+|+|||+|..+..+.+.+     
T Consensus         5 ~~~~~~f~~~a----~~yd~~~~~--~~~~~~~~~~~~~l~~l~~------~~~~~vLDiGcG~G~~~~~la~~~-----   67 (231)
T TIGR02752         5 ERVHKVFEKIY----KKYDRMNSV--ISFQRHKKWRKDTMKRMNV------QAGTSALDVCCGTADWSIALAEAV-----   67 (231)
T ss_pred             HHHHHHHHHhh----hHHhHHHHH--hcCCchHHHHHHHHHhcCC------CCCCEEEEeCCCcCHHHHHHHHHh-----
Confidence            56778888877    588885431  0001111222222222321      234789999999999888776322     


Q ss_pred             HHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccc
Q 016644           93 KRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLH  172 (385)
Q Consensus        93 ~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alH  172 (385)
                               .|..+++..|+..+.....-+.+...           ...++  ..+.++...--+|++++|+|+++.++|
T Consensus        68 ---------~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~v--~~~~~d~~~~~~~~~~fD~V~~~~~l~  125 (231)
T TIGR02752        68 ---------GPEGHVIGLDFSENMLSVGRQKVKDA-----------GLHNV--ELVHGNAMELPFDDNSFDYVTIGFGLR  125 (231)
T ss_pred             ---------CCCCEEEEEECCHHHHHHHHHHHHhc-----------CCCce--EEEEechhcCCCCCCCccEEEEecccc
Confidence                     14468899998654433322222110           01121  123335444337889999999999999


Q ss_pred             cccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCcc
Q 016644          173 WLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGI  252 (385)
Q Consensus       173 WLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~  252 (385)
                      |+++...                                      +|+...+-|+|||++++.-.+.++.         .
T Consensus       126 ~~~~~~~--------------------------------------~l~~~~~~Lk~gG~l~~~~~~~~~~---------~  158 (231)
T TIGR02752       126 NVPDYMQ--------------------------------------VLREMYRVVKPGGKVVCLETSQPTI---------P  158 (231)
T ss_pred             cCCCHHH--------------------------------------HHHHHHHHcCcCeEEEEEECCCCCC---------h
Confidence            9865332                                      3355678899999998876554311         1


Q ss_pred             chHHHHHHHHHHHHH--cCCccccccc---ccccccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          253 LFGTHFQDAWNDLVQ--EGLITGEKRD---SFNIPVYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       253 ~~~~~l~~al~~mv~--eG~i~~e~~d---~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      .+.......+..+..  .+.+.....+   -......+|+.+|++..+++.| |++.+++.+.
T Consensus       159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~  220 (231)
T TIGR02752       159 GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG-FKDVEVKSYT  220 (231)
T ss_pred             HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCeeEEEEcc
Confidence            110111111111100  0011000000   0012346889999999999999 9988877664

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.02  E-value=1.1e-08  Score=106.05  Aligned_cols=193  Identities=15%  Similarity=0.191  Sum_probs=119.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.+        .        ...+|+--|+........-+....           ...+--|
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~--------~--------~~~~v~gvDiS~~~l~~A~~~~~~-----------~~~~v~~  318 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAE--------N--------FDVHVVGIDLSVNMISFALERAIG-----------RKCSVEF  318 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHH--------h--------cCCEEEEEECCHHHHHHHHHHhhc-----------CCCceEE
Confidence            346899999999987765542        1        135788889854332222111110           0011123


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++....+|++++|+|+|..+++|+.+.+.                                      +|+.-++
T Consensus       319 ~~---~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~--------------------------------------~l~~~~r  357 (475)
T PLN02336        319 EV---ADCTKKTYPDNSFDVIYSRDTILHIQDKPA--------------------------------------LFRSFFK  357 (475)
T ss_pred             EE---cCcccCCCCCCCEEEEEECCcccccCCHHH--------------------------------------HHHHHHH
Confidence            33   366666688999999999999999865333                                      3355688


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++..+.+....+.          ..+...+.   ..|             ...++.+++.+.+++.| |++.
T Consensus       358 ~LkpgG~l~i~~~~~~~~~~~----------~~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i  410 (475)
T PLN02336        358 WLKPGGKVLISDYCRSPGTPS----------PEFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDV  410 (475)
T ss_pred             HcCCCeEEEEEEeccCCCCCc----------HHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-Ceee
Confidence            999999999998776432111          11111111   111             34678999999999999 9987


Q ss_pred             EEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhh--hhHHhhhChHHHHHHHHHHHHHhhch
Q 016644          305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAG--VLVDAHIGDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       305 ~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~e--p~l~~hfg~~i~delf~r~~~~~~~~  365 (385)
                      .++.+.             ..+...++.|...+..  .-+...+|++..+.+...+.+.+...
T Consensus       411 ~~~d~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  460 (475)
T PLN02336        411 IAEDRT-------------DQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRS  460 (475)
T ss_pred             eeecch-------------HHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhh
Confidence            655432             1134444444444422  12334788988888888888888765

>TIGR00740 methyltransferase, putative

Probab=98.99  E-value=3.6e-09  Score=99.84  Aligned_cols=164  Identities=16%  Similarity=0.165  Sum_probs=98.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|.++..+.+.+             ..|..+++.-|+-.+.....-+.+...          ....++ 
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~~ml~~a~~~~~~~----------~~~~~v-  108 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQPMVERCRQHIAAY----------HSEIPV-  108 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCHHHHHHHHHHHHhc----------CCCCCe-
Confidence            34689999999999888776332             125688999998654444333333210          001112 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-+++..-  |..+.|+++|++++||++..                                    |...+|+.-.+
T Consensus       109 -~~~~~d~~~~--~~~~~d~v~~~~~l~~~~~~------------------------------------~~~~~l~~i~~  149 (239)
T TIGR00740       109 -EILCNDIRHV--EIKNASMVILNFTLQFLPPE------------------------------------DRIALLTKIYE  149 (239)
T ss_pred             -EEEECChhhC--CCCCCCEEeeecchhhCCHH------------------------------------HHHHHHHHHHH
Confidence             1233465432  33358999999999998431                                    23345677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH-cCCcccccc----cccccccccCCHHHHHHHHHhcC
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ-EGLITGEKR----DSFNIPVYASSLQEFKEVVEANG  299 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~P~y~ps~~Ev~~~le~~g  299 (385)
                      .|+|||++++.-..+.....         ..+.+.+.+..+.. .| .+.+++    +.+.-.....|++|+++.+++.|
T Consensus       150 ~LkpgG~l~i~d~~~~~~~~---------~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG  219 (239)
T TIGR00740       150 GLNPNGVLVLSEKFRFEDTK---------INHLLIDLHHQFKRANG-YSELEISQKRTALENVMRTDSIETHKARLKNVG  219 (239)
T ss_pred             hcCCCeEEEEeecccCCCHh---------HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC
Confidence            99999999988654421110         01234444444443 34 344332    22333445679999999999999


Q ss_pred             ceE
Q 016644          300 SFV  302 (385)
Q Consensus       300 sF~  302 (385)
                       |+
T Consensus       220 -F~  221 (239)
T TIGR00740       220 -FS  221 (239)
T ss_pred             -Cc
Confidence             76

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02244 tocopherol O-methyltransferase

Probab=98.95  E-value=3.3e-08  Score=98.43  Aligned_cols=162  Identities=15%  Similarity=0.235  Sum_probs=94.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|.++..+...        +        ..+|+--|+..+.....-+.....         ....+-.|
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~--------~--------g~~v~gvD~s~~~i~~a~~~~~~~---------g~~~~v~~  172 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARK--------Y--------GANVKGITLSPVQAARANALAAAQ---------GLSDKVSF  172 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHh--------c--------CCEEEEEECCHHHHHHHHHHHHhc---------CCCCceEE
Confidence            4578999999999998877632        1        246777787544333222211100         00011123


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++.+--||++++|+|+|..++|++.+...                                      +|+.-.+
T Consensus       173 ~~---~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~--------------------------------------~l~e~~r  211 (340)
T PLN02244        173 QV---ADALNQPFEDGQFDLVWSMESGEHMPDKRK--------------------------------------FVQELAR  211 (340)
T ss_pred             EE---cCcccCCCCCCCccEEEECCchhccCCHHH--------------------------------------HHHHHHH
Confidence            33   354444488999999999999998755322                                      3345678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++.........+....   ..  ..-...+..+..          .+.+|. +.+.+|+...+++.| |+..
T Consensus       212 vLkpGG~lvi~~~~~~~~~~~~~~---l~--~~~~~~~~~i~~----------~~~~p~-~~s~~~~~~~l~~aG-f~~v  274 (340)
T PLN02244        212 VAAPGGRIIIVTWCHRDLEPGETS---LK--PDEQKLLDKICA----------AYYLPA-WCSTSDYVKLAESLG-LQDI  274 (340)
T ss_pred             HcCCCcEEEEEEeccccccccccc---CC--HHHHHHHHHHHh----------hccCCC-CCCHHHHHHHHHHCC-CCee
Confidence            999999999987665432221110   11  111222222211          112332 358999999999999 8876


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      +.+.+
T Consensus       275 ~~~d~  279 (340)
T PLN02244        275 KTEDW  279 (340)
T ss_pred             EeeeC
Confidence            65543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.88  E-value=1.2e-09  Score=103.24  Aligned_cols=165  Identities=18%  Similarity=0.278  Sum_probs=70.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||||..|+.+...+              .|..+|+.-|+..++....-+.+..           ....++ 
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s~~ML~~a~~k~~~-----------~~~~~i~  101 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDISPGMLEVARKKLKR-----------EGLQNIE  101 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES-HHHHHHHHHHHHH-----------TT--SEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCCHHHHHHHHHHHHh-----------hCCCCee
Confidence            45799999999999988876222              2457899999877666655443321           001133 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      |+.+   + .+.| ||++|+|.+++++.||-+.+.+..+                                      +.-
T Consensus       102 ~v~~---d-a~~lp~~d~sfD~v~~~fglrn~~d~~~~l--------------------------------------~E~  139 (233)
T PF01209_consen  102 FVQG---D-AEDLPFPDNSFDAVTCSFGLRNFPDRERAL--------------------------------------REM  139 (233)
T ss_dssp             EEE----B-TTB--S-TT-EEEEEEES-GGG-SSHHHHH--------------------------------------HHH
T ss_pred             EEEc---C-HHHhcCCCCceeEEEHHhhHHhhCCHHHHH--------------------------------------HHH
Confidence            4443   5 4556 9999999999999999987755554                                      346


Q ss_pred             HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH-HHH--cCCcccccccccc----cccccCCHHHHHHHH
Q 016644          223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND-LVQ--EGLITGEKRDSFN----IPVYASSLQEFKEVV  295 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~-mv~--eG~i~~e~~d~f~----~P~y~ps~~Ev~~~l  295 (385)
                      .+.|||||++++.=+++...         ..+ ..+...+.. .+.  -+++..+ .+.+.    .-..||+.+|+.+.+
T Consensus       140 ~RVLkPGG~l~ile~~~p~~---------~~~-~~~~~~y~~~ilP~~g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l  208 (233)
T PF01209_consen  140 YRVLKPGGRLVILEFSKPRN---------PLL-RALYKFYFKYILPLIGRLLSGD-REAYRYLPESIRRFPSPEELKELL  208 (233)
T ss_dssp             HHHEEEEEEEEEEEEEB-SS---------HHH-HHHHHH-----------------------------------------
T ss_pred             HHHcCCCeEEEEeeccCCCC---------chh-hceeeeeecccccccccccccc-cccccccccccccccccccccccc
Confidence            79999999999888887521         100 112222221 111  1222221 12221    223589999999999


Q ss_pred             HhcCceEecEEEE
Q 016644          296 EANGSFVINKLEV  308 (385)
Q Consensus       296 e~~gsF~i~~le~  308 (385)
                      ++.| |+..+.+.
T Consensus       209 ~~~G-f~~v~~~~  220 (233)
T PF01209_consen  209 EEAG-FKNVEYRP  220 (233)
T ss_dssp             -------------
T ss_pred             cccc-cccccccc
Confidence            9999 87544443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.87  E-value=3e-09  Score=92.79  Aligned_cols=137  Identities=21%  Similarity=0.202  Sum_probs=88.5

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      .+..+|+|+|||+|.++..+.        +.        + .+++..|.-......     .                  
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~--------~~--------~-~~~~g~D~~~~~~~~-----~------------------   60 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALA--------KR--------G-FEVTGVDISPQMIEK-----R------------------   60 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHH--------HT--------T-SEEEEEESSHHHHHH-----T------------------
T ss_pred             CCCCEEEEEcCCCCHHHHHHH--------Hh--------C-CEEEEEECCHHHHhh-----h------------------
Confidence            356899999999998766553        11        2 488888874322111     0                  


Q ss_pred             eeccccCccc--cccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFY--RRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       144 f~~~vpgSFy--~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                        ..++..|.  ...+|++++|+|+|+.+|||+.+.+                                      .+|+.
T Consensus        61 --~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~--------------------------------------~~l~~  100 (161)
T PF13489_consen   61 --NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE--------------------------------------EFLKE  100 (161)
T ss_dssp             --TSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHH--------------------------------------HHHHH
T ss_pred             --hhhhhhhhhhhhhccccchhhHhhHHHHhhcccHH--------------------------------------HHHHH
Confidence              01122332  3347899999999999999997533                                      33466


Q ss_pred             HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      -.+-|+|||+++++...+..            .   ....+..+   ......     +--..+.+.++++.++++.| |
T Consensus       101 l~~~LkpgG~l~~~~~~~~~------------~---~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~ll~~~G-~  156 (161)
T PF13489_consen  101 LSRLLKPGGYLVISDPNRDD------------P---SPRSFLKW---RYDRPY-----GGHVHFFSPDELRQLLEQAG-F  156 (161)
T ss_dssp             HHHCEEEEEEEEEEEEBTTS------------H---HHHHHHHC---CGTCHH-----TTTTEEBBHHHHHHHHHHTT-E
T ss_pred             HHHhcCCCCEEEEEEcCCcc------------h---hhhHHHhc---CCcCcc-----CceeccCCHHHHHHHHHHCC-C
Confidence            78999999999999988741            0   12222221   101000     01235669999999999999 8


Q ss_pred             Eec
Q 016644          302 VIN  304 (385)
Q Consensus       302 ~i~  304 (385)
                      +|.
T Consensus       157 ~iv  159 (161)
T PF13489_consen  157 EIV  159 (161)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

...

>PRK08317 hypothetical protein; Provisional

Probab=98.85  E-value=3.6e-07  Score=84.64  Aligned_cols=206  Identities=13%  Similarity=0.064  Sum_probs=111.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..+..+....              .|..+++.-|+-.......-+....           .....-|
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~~~~-----------~~~~~~~   73 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKERAAG-----------LGPNVEF   73 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHHhhC-----------CCCceEE
Confidence            45789999999999887665322              1446788888854433333222110           0011112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++...-++++++|++++..++||+.+.+..                                      |+...+
T Consensus        74 ~~---~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~--------------------------------------l~~~~~  112 (241)
T PRK08317         74 VR---GDADGLPFPDGSFDAVRSDRVLQHLEDPARA--------------------------------------LAEIAR  112 (241)
T ss_pred             Ee---cccccCCCCCCCceEEEEechhhccCCHHHH--------------------------------------HHHHHH
Confidence            22   2443334688999999999999998763333                                      355688


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++....-......      ......+...+..+...+          .-   ..+..++...+++.| |+..
T Consensus       113 ~L~~gG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~l~~aG-f~~~  172 (241)
T PRK08317        113 VLRPGGRVVVLDTDWDTLVWH------SGDRALMRKILNFWSDHF----------AD---PWLGRRLPGLFREAG-LTDI  172 (241)
T ss_pred             HhcCCcEEEEEecCCCceeec------CCChHHHHHHHHHHHhcC----------CC---CcHHHHHHHHHHHcC-CCce
Confidence            999999999876432211000      000011222222221111          01   123568999999999 9888


Q ss_pred             EEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhc
Q 016644          305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSC  364 (385)
Q Consensus       305 ~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~  364 (385)
                      .++.+...     ..+.+.......+..+.+.+.+   .....++-++++++.+++....
T Consensus       173 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~  224 (241)
T PRK08317        173 EVEPYTLI-----ETDLKEADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLARA  224 (241)
T ss_pred             eEEEEEEe-----ccCcchhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHhc
Confidence            88877521     1111111122333334444432   1223456667777777765443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.81  E-value=4.9e-08  Score=93.06  Aligned_cols=163  Identities=15%  Similarity=0.202  Sum_probs=95.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..++.+..        .         ..+|+..|+-...-...-+.+...          .-..++ 
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~--------~---------g~~v~~vD~s~~~l~~a~~~~~~~----------g~~~~v~   96 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAE--------L---------GHQVILCDLSAEMIQRAKQAAEAK----------GVSDNMQ   96 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHhc----------CCccceE
Confidence            457999999999998877752        1         257888898554433332222210          001121 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      |+.   ++..+-. ++++++|+|++..++||+.+.+..+                                      ..-
T Consensus        97 ~~~---~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l--------------------------------------~~~  135 (255)
T PRK11036         97 FIH---CAAQDIAQHLETPVDLILFHAVLEWVADPKSVL--------------------------------------QTL  135 (255)
T ss_pred             EEE---cCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHH--------------------------------------HHH
Confidence            332   2433211 5678999999999999997643322                                      445


Q ss_pred             HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      ++-|+|||++++.+.....          ..+...+..-|. .+..|+...+..  .-.|.+..+++++.+.+++.| |+
T Consensus       136 ~~~LkpgG~l~i~~~n~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~  201 (255)
T PRK11036        136 WSVLRPGGALSLMFYNANG----------LLMHNMVAGNFD-YVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQ  201 (255)
T ss_pred             HHHcCCCeEEEEEEECccH----------HHHHHHHccChH-HHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-Ce
Confidence            7889999999988765421          000000111111 122332221111  123667789999999999999 98


Q ss_pred             ecEEEEE
Q 016644          303 INKLEVF  309 (385)
Q Consensus       303 i~~le~~  309 (385)
                      +....-.
T Consensus       202 ~~~~~gi  208 (255)
T PRK11036        202 IMGKTGV  208 (255)
T ss_pred             EeeeeeE
Confidence            8765543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.78  E-value=7.2e-08  Score=91.68  Aligned_cols=165  Identities=15%  Similarity=0.153  Sum_probs=97.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|.+++.+...+             ..|..+++.-|+-...-...-+.+...          ....++ 
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~S~~ml~~A~~~~~~~----------~~~~~v-  111 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNSPAMIERCRRHIDAY----------KAPTPV-  111 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeCCHHHHHHHHHHHHhc----------CCCCCe-
Confidence            34789999999999888765322             125678999998554443333333210          001111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++.+ + |....|+++|+.++||++.  ..                                  ...+|+.-++
T Consensus       112 -~~~~~d~~~-~-~~~~~D~vv~~~~l~~l~~--~~----------------------------------~~~~l~~i~~  152 (247)
T PRK15451        112 -DVIEGDIRD-I-AIENASMVVLNFTLQFLEP--SE----------------------------------RQALLDKIYQ  152 (247)
T ss_pred             -EEEeCChhh-C-CCCCCCEEehhhHHHhCCH--HH----------------------------------HHHHHHHHHH
Confidence             112345433 2 3345899999999999863  11                                  1234566788


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccc----ccccccCCHHHHHHHHHhcCc
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSF----NIPVYASSLQEFKEVVEANGS  300 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f----~~P~y~ps~~Ev~~~le~~gs  300 (385)
                      -|+|||.|++.-.-.....         ...+.+...|.++....-.+++++..+    .--...-|+++..+.+++.| 
T Consensus       153 ~LkpGG~l~l~e~~~~~~~---------~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-  222 (247)
T PRK15451        153 GLNPGGALVLSEKFSFEDA---------KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-  222 (247)
T ss_pred             hcCCCCEEEEEEecCCCcc---------hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-
Confidence            9999999998753222110         011335566766655444666555432    11222348999999999999 


Q ss_pred             eE
Q 016644          301 FV  302 (385)
Q Consensus       301 F~  302 (385)
                      |+
T Consensus       223 F~  224 (247)
T PRK15451        223 FE  224 (247)
T ss_pred             ch
Confidence            65

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.75  E-value=5.5e-08  Score=96.12  Aligned_cols=157  Identities=13%  Similarity=0.087  Sum_probs=94.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..+..+..                 +..+|+.-|+-........+....         .....+--|.
T Consensus       132 g~~ILDIGCG~G~~s~~La~-----------------~g~~V~GID~s~~~i~~Ar~~~~~---------~~~~~~i~~~  185 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLAR-----------------MGATVTGVDAVDKNVKIARLHADM---------DPVTSTIEYL  185 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHH-----------------cCCEEEEEeCCHHHHHHHHHHHHh---------cCcccceeEE
Confidence            46899999999998775541                 236788888765443333221110         0000011133


Q ss_pred             ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .   +++ +.+ ++++++|+|++..+|||+.+.+.                                      ||+..++
T Consensus       186 ~---~da-e~l~~~~~~FD~Vi~~~vLeHv~d~~~--------------------------------------~L~~l~r  223 (322)
T PLN02396        186 C---TTA-EKLADEGRKFDAVLSLEVIEHVANPAE--------------------------------------FCKSLSA  223 (322)
T ss_pred             e---cCH-HHhhhccCCCCEEEEhhHHHhcCCHHH--------------------------------------HHHHHHH
Confidence            3   243 344 67789999999999999877433                                      3456778


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHH--HHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQ--DAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~--~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      -|+|||+++++...+..          ..|+..+.  .-+..++..|         ......+.+++|+...+++.| |+
T Consensus       224 ~LkPGG~liist~nr~~----------~~~~~~i~~~eyi~~~lp~g---------th~~~~f~tp~eL~~lL~~aG-f~  283 (322)
T PLN02396        224 LTIPNGATVLSTINRTM----------RAYASTIVGAEYILRWLPKG---------THQWSSFVTPEELSMILQRAS-VD  283 (322)
T ss_pred             HcCCCcEEEEEECCcCH----------HHHHHhhhhHHHHHhcCCCC---------CcCccCCCCHHHHHHHHHHcC-Ce
Confidence            89999999999876531          01110010  0111111111         011224789999999999999 98


Q ss_pred             ecEEEEEe
Q 016644          303 INKLEVFK  310 (385)
Q Consensus       303 i~~le~~~  310 (385)
                      +..+.-+.
T Consensus       284 i~~~~G~~  291 (322)
T PLN02396        284 VKEMAGFV  291 (322)
T ss_pred             EEEEeeeE
Confidence            87776543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.71  E-value=4.4e-08  Score=96.92  Aligned_cols=153  Identities=16%  Similarity=0.176  Sum_probs=91.2

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+|||+|..++.+..        ..       + -+|+--|... .+..-++.....       ..  ...++- 
T Consensus       123 g~~VLDIGCG~G~~~~~la~--------~g-------~-~~V~GiD~S~-~~l~q~~a~~~~-------~~--~~~~i~-  175 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLG--------AG-------A-KLVVGIDPSQ-LFLCQFEAVRKL-------LG--NDQRAH-  175 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHH--------cC-------C-CEEEEEcCCH-HHHHHHHHHHHh-------cC--CCCCeE-
Confidence            36899999999999987652        11       3 3588888433 332222211100       00  011221 


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                       -++++ .+.+-.++++|+|+|..++||+.+...                                      +|+.-++.
T Consensus       176 -~~~~d-~e~lp~~~~FD~V~s~~vl~H~~dp~~--------------------------------------~L~~l~~~  215 (322)
T PRK15068        176 -LLPLG-IEQLPALKAFDTVFSMGVLYHRRSPLD--------------------------------------HLKQLKDQ  215 (322)
T ss_pred             -EEeCC-HHHCCCcCCcCEEEECChhhccCCHHH--------------------------------------HHHHHHHh
Confidence             13334 344422789999999999998755322                                      34557889


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecE
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINK  305 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~  305 (385)
                      |+|||+|++..+........      ..+                 ..+.+..+...++.||.+++...+++.| |++.+
T Consensus       216 LkpGG~lvl~~~~i~~~~~~------~l~-----------------p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~  271 (322)
T PRK15068        216 LVPGGELVLETLVIDGDENT------VLV-----------------PGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVR  271 (322)
T ss_pred             cCCCcEEEEEEEEecCCCcc------ccC-----------------chhHHhcCccceeCCCHHHHHHHHHHcC-CceEE
Confidence            99999999987655321100      000                 0011112233456789999999999999 99777


Q ss_pred             EEEE
Q 016644          306 LEVF  309 (385)
Q Consensus       306 le~~  309 (385)
                      +...
T Consensus       272 ~~~~  275 (322)
T PRK15068        272 IVDV  275 (322)
T ss_pred             EEeC
Confidence            6644

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.70  E-value=5.5e-08  Score=90.29  Aligned_cols=152  Identities=20%  Similarity=0.283  Sum_probs=101.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+.+|+|||-|+.+..+..+=|                -+++.-|....+-.+-.              +.. .+.+-+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS~~M~~s~~--------------~~q-dp~i~~  121 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTSYDMIKSCR--------------DAQ-DPSIET  121 (325)
T ss_pred             CcceeecccchhhhhHHHHhcch----------------hheeeeecchHHHHHhh--------------ccC-CCceEE
Confidence            45679999999998887763322                34566666432222111              110 111111


Q ss_pred             ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +-.-|+ -++| |-+||+|+++||.++||..++|...                                      ..+..
T Consensus       122 ~~~v~D-EE~Ldf~ens~DLiisSlslHW~NdLPg~m--------------------------------------~~ck~  162 (325)
T KOG2940|consen  122 SYFVGD-EEFLDFKENSVDLIISSLSLHWTNDLPGSM--------------------------------------IQCKL  162 (325)
T ss_pred             EEEecc-hhcccccccchhhhhhhhhhhhhccCchHH--------------------------------------HHHHH
Confidence            100012 3666 9999999999999999999999876                                      33678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccccc--CCHHHHHHHHHhcCceE
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYA--SSLQEFKEVVEANGSFV  302 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~--ps~~Ev~~~le~~gsF~  302 (385)
                      .|||.|.++.+++|-+           +.|.--..-.|.+|-.+|-|+         |...  -...++-.++...| |+
T Consensus       163 ~lKPDg~Fiasmlggd-----------TLyELR~slqLAelER~GGiS---------phiSPf~qvrDiG~LL~rAG-F~  221 (325)
T KOG2940|consen  163 ALKPDGLFIASMLGGD-----------TLYELRCSLQLAELEREGGIS---------PHISPFTQVRDIGNLLTRAG-FS  221 (325)
T ss_pred             hcCCCccchhHHhccc-----------cHHHHHHHhhHHHHHhccCCC---------CCcChhhhhhhhhhHHhhcC-cc
Confidence            9999999999999974           344322455566888899887         4433  36778889999999 87


Q ss_pred             ecEEEE
Q 016644          303 INKLEV  308 (385)
Q Consensus       303 i~~le~  308 (385)
                      ...+.+
T Consensus       222 m~tvDt  227 (325)
T KOG2940|consen  222 MLTVDT  227 (325)
T ss_pred             cceecc
Confidence            655544

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.70  E-value=2e-07  Score=92.75  Aligned_cols=146  Identities=20%  Similarity=0.177  Sum_probs=91.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..++.+.+..               +..+++..|+..+.....-+....              .++ 
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~~mL~~A~~k~~~--------------~~i-  162 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSPHQLAKAKQKEPL--------------KEC-  162 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHhhhc--------------cCC-
Confidence            34799999999999887765322               336788899865544433322210              111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.++..+.-++++++|+++|+.++|++.+...                                      .|+.-.+
T Consensus       163 -~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~--------------------------------------~L~e~~r  203 (340)
T PLN02490        163 -KIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR--------------------------------------GIKEAYR  203 (340)
T ss_pred             -eEEeccHHhCCCCCCceeEEEEcChhhhCCCHHH--------------------------------------HHHHHHH
Confidence             1134454433378899999999999998765322                                      2355689


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++......            .++  +..-+.++                -..+++.+|+.+.+++.| |+..
T Consensus       204 vLkPGG~LvIi~~~~p------------~~~--~~r~~~~~----------------~~~~~t~eEl~~lL~~aG-F~~V  252 (340)
T PLN02490        204 VLKIGGKACLIGPVHP------------TFW--LSRFFADV----------------WMLFPKEEEYIEWFTKAG-FKDV  252 (340)
T ss_pred             hcCCCcEEEEEEecCc------------chh--HHHHhhhh----------------hccCCCHHHHHHHHHHCC-CeEE
Confidence            9999999987532211            011  11111110                113579999999999999 9877


Q ss_pred             EEEEEe
Q 016644          305 KLEVFK  310 (385)
Q Consensus       305 ~le~~~  310 (385)
                      +++...
T Consensus       253 ~i~~i~  258 (340)
T PLN02490        253 KLKRIG  258 (340)
T ss_pred             EEEEcC
Confidence            776643

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.67  E-value=2.1e-08  Score=79.30  Aligned_cols=95  Identities=22%  Similarity=0.244  Sum_probs=62.2

Q ss_pred             eeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecccc
Q 016644           70 ADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVP  149 (385)
Q Consensus        70 aDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vp  149 (385)
                      +|+|||+|.++..+.+.                +..+++-.|.-...-...-+....             ...-|..   
T Consensus         1 LdiG~G~G~~~~~l~~~----------------~~~~v~~~D~~~~~~~~~~~~~~~-------------~~~~~~~---   48 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR----------------GGASVTGIDISEEMLEQARKRLKN-------------EGVSFRQ---   48 (95)
T ss_dssp             EEET-TTSHHHHHHHHT----------------TTCEEEEEES-HHHHHHHHHHTTT-------------STEEEEE---
T ss_pred             CEecCcCCHHHHHHHhc----------------cCCEEEEEeCCHHHHHHHHhcccc-------------cCchhee---
Confidence            79999999999888732                247888888754433333333321             0111333   


Q ss_pred             CccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 016644          150 GSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRC  229 (385)
Q Consensus       150 gSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  229 (385)
                      +++..--||++|+|+++++.++||+.+                                      ...+|+.-++-||||
T Consensus        49 ~d~~~l~~~~~sfD~v~~~~~~~~~~~--------------------------------------~~~~l~e~~rvLk~g   90 (95)
T PF08241_consen   49 GDAEDLPFPDNSFDVVFSNSVLHHLED--------------------------------------PEAALREIYRVLKPG   90 (95)
T ss_dssp             SBTTSSSS-TT-EEEEEEESHGGGSSH--------------------------------------HHHHHHHHHHHEEEE
T ss_pred             ehHHhCccccccccccccccceeeccC--------------------------------------HHHHHHHHHHHcCcC
Confidence            365555599999999999999999922                                      334556689999999


Q ss_pred             CeEEE
Q 016644          230 GSMFL  234 (385)
Q Consensus       230 G~lvl  234 (385)
                      |++++
T Consensus        91 G~l~~   95 (95)
T PF08241_consen   91 GRLVI   95 (95)
T ss_dssp             EEEEE
T ss_pred             eEEeC
Confidence            99985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00452 methyltransferase, putative

Probab=98.66  E-value=1.1e-07  Score=93.79  Aligned_cols=153  Identities=16%  Similarity=0.120  Sum_probs=88.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..++.        ..       + -.|+--|.......+ |+.....       .  .....+.
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~--------~g-------~-~~v~GiDpS~~ml~q-~~~~~~~-------~--~~~~~v~  174 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLG--------HG-------A-KSLVGIDPTVLFLCQ-FEAVRKL-------L--DNDKRAI  174 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHH--------cC-------C-CEEEEEcCCHHHHHH-HHHHHHH-------h--ccCCCeE
Confidence            346999999999998766641        11       2 256666753322222 2211100       0  0011111


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                        ..+++ .+.+-+.+++|+|+|+.+|||+.+...                                      +|+.-++
T Consensus       175 --~~~~~-ie~lp~~~~FD~V~s~gvL~H~~dp~~--------------------------------------~L~el~r  213 (314)
T TIGR00452       175 --LEPLG-IEQLHELYAFDTVFSMGVLYHRKSPLE--------------------------------------HLKQLKH  213 (314)
T ss_pred             --EEECC-HHHCCCCCCcCEEEEcchhhccCCHHH--------------------------------------HHHHHHH
Confidence              12333 345545579999999999999754322                                      3456789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||.|++..+.......       ..    +.            ..+.+..+...++.||.+++...+++.| |+..
T Consensus       214 ~LkpGG~Lvletl~i~g~~~-------~~----l~------------p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V  269 (314)
T TIGR00452       214 QLVIKGELVLETLVIDGDLN-------TV----LV------------PKDRYAKMKNVYFIPSVSALKNWLEKVG-FENF  269 (314)
T ss_pred             hcCCCCEEEEEEEEecCccc-------cc----cC------------chHHHHhccccccCCCHHHHHHHHHHCC-CeEE
Confidence            99999999998765431100       00    00            0001112233566789999999999999 9866


Q ss_pred             EEEE
Q 016644          305 KLEV  308 (385)
Q Consensus       305 ~le~  308 (385)
                      ++..
T Consensus       270 ~i~~  273 (314)
T TIGR00452       270 RILD  273 (314)
T ss_pred             EEEe
Confidence            5543

Known examples to date are restricted to the proteobacteria.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.64  E-value=8e-07  Score=82.69  Aligned_cols=169  Identities=16%  Similarity=0.191  Sum_probs=97.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc-ee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS-YF  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-~f  144 (385)
                      ..+|+|+|||+|..+..+....              ++..+++..|+..+.....-+.+...          ....+ -|
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~~~a~~~~~~~----------~~~~~~~~  107 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEGMLAVGREKLRDL----------GLSGNVEF  107 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHHHHHHHHHhhccc----------ccccCeEE
Confidence            4789999999999888775322              12478899998654333332222210          00111 12


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .   -+++.+..++++++|+++++.++|++++.+..                                      |....+
T Consensus       108 ~---~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~--------------------------------------l~~~~~  146 (239)
T PRK00216        108 V---QGDAEALPFPDNSFDAVTIAFGLRNVPDIDKA--------------------------------------LREMYR  146 (239)
T ss_pred             E---ecccccCCCCCCCccEEEEecccccCCCHHHH--------------------------------------HHHHHH
Confidence            2   23555555778899999999999998764433                                      345678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH-HHH-cC-Cccc--ccccc-cccccccCCHHHHHHHHHhc
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND-LVQ-EG-LITG--EKRDS-FNIPVYASSLQEFKEVVEAN  298 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~-mv~-eG-~i~~--e~~d~-f~~P~y~ps~~Ev~~~le~~  298 (385)
                      -|+|||++++.-.......        . + ..+.+.+.. +.. -+ ....  +..+. .+.-..+++.+++..++++.
T Consensus       147 ~L~~gG~li~~~~~~~~~~--------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  216 (239)
T PRK00216        147 VLKPGGRLVILEFSKPTNP--------P-L-KKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEA  216 (239)
T ss_pred             hccCCcEEEEEEecCCCch--------H-H-HHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            8999999988765443110        0 1 112222211 100 00 0000  00000 00113467999999999999


Q ss_pred             CceEecEEEEEe
Q 016644          299 GSFVINKLEVFK  310 (385)
Q Consensus       299 gsF~i~~le~~~  310 (385)
                      | |++.+...+.
T Consensus       217 G-f~~~~~~~~~  227 (239)
T PRK00216        217 G-FERVRYRNLT  227 (239)
T ss_pred             C-Cceeeeeeee
Confidence            9 9988877765

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.60  E-value=4.4e-06  Score=84.61  Aligned_cols=187  Identities=13%  Similarity=0.201  Sum_probs=111.8

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+.+        .+        ..+|+--|+-.......-+....             . .+  
T Consensus       168 g~rVLDIGcG~G~~a~~la~--------~~--------g~~V~giDlS~~~l~~A~~~~~~-------------l-~v--  215 (383)
T PRK11705        168 GMRVLDIGCGWGGLARYAAE--------HY--------GVSVVGVTISAEQQKLAQERCAG-------------L-PV--  215 (383)
T ss_pred             CCEEEEeCCCccHHHHHHHH--------HC--------CCEEEEEeCCHHHHHHHHHHhcc-------------C-eE--
Confidence            46899999999998876652        21        25778888865444333222211             0 11  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ....++ |..+  ++++|.|+|...++|+..                                    +++..+++.-.+-
T Consensus       216 ~~~~~D-~~~l--~~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~  256 (383)
T PRK11705        216 EIRLQD-YRDL--NGQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRC  256 (383)
T ss_pred             EEEECc-hhhc--CCCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHH
Confidence            112234 3333  579999999999988632                                    1244566778899


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccc-ccCCHHHHHHHHHhcCceEec
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPV-YASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      |+|||++++...+.+.....             ..             ..++.+.+|- +.|+++++....+ .| |++.
T Consensus       257 LkpGG~lvl~~i~~~~~~~~-------------~~-------------~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~  308 (383)
T PRK11705        257 LKPDGLFLLHTIGSNKTDTN-------------VD-------------PWINKYIFPNGCLPSVRQIAQASE-GL-FVME  308 (383)
T ss_pred             cCCCcEEEEEEccCCCCCCC-------------CC-------------CCceeeecCCCcCCCHHHHHHHHH-CC-cEEE
Confidence            99999999998876532100             00             1122344563 6899999998877 45 9888


Q ss_pred             EEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhh--hHHhhhChHHHHHHHHHHHHHhhch
Q 016644          305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGV--LVDAHIGDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       305 ~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep--~l~~hfg~~i~delf~r~~~~~~~~  365 (385)
                      .++.+.         +    .+++.+..|.+.|-..  -+.+.+|++... ++.-|-...+..
T Consensus       309 d~~~~~---------~----hy~~TL~~W~~~f~~~~~~~~~~~~~~~~r-~w~~yl~~~~~~  357 (383)
T PRK11705        309 DWHNFG---------A----DYDRTLMAWHENFEAAWPELADNYSERFYR-MWRYYLLSCAGA  357 (383)
T ss_pred             EEecCh---------h----hHHHHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHH
Confidence            777653         1    1556666665555442  133456655332 355555555544

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.60  E-value=2e-07  Score=86.68  Aligned_cols=144  Identities=13%  Similarity=0.172  Sum_probs=88.8

Q ss_pred             EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644           68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG  147 (385)
Q Consensus        68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~  147 (385)
                      +|+|+|||+|..+..+.+        .+       |..+++-.|+..+.....-+.+...          .-..++  ..
T Consensus         2 ~vLDiGcG~G~~~~~la~--------~~-------~~~~v~gid~s~~~~~~a~~~~~~~----------gl~~~i--~~   54 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAE--------RH-------PHLQLHGYTISPEQAEVGRERIRAL----------GLQGRI--RI   54 (224)
T ss_pred             eEEEECCCCCHHHHHHHH--------HC-------CCCEEEEEECCHHHHHHHHHHHHhc----------CCCcce--EE
Confidence            689999999998776652        22       3467777887544333332222210          000111  11


Q ss_pred             ccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016644          148 VPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMK  227 (385)
Q Consensus       148 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~  227 (385)
                      +.+++....+ ++++|+|+|..++|++.+.+                                      .+|+.-++-|+
T Consensus        55 ~~~d~~~~~~-~~~fD~I~~~~~l~~~~~~~--------------------------------------~~l~~~~~~Lk   95 (224)
T smart00828       55 FYRDSAKDPF-PDTYDLVFGFEVIHHIKDKM--------------------------------------DLFSNISRHLK   95 (224)
T ss_pred             EecccccCCC-CCCCCEeehHHHHHhCCCHH--------------------------------------HHHHHHHHHcC
Confidence            2234333333 45899999999999985522                                      34466789999


Q ss_pred             cCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEE
Q 016644          228 RCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLE  307 (385)
Q Consensus       228 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le  307 (385)
                      |||++++.-.......            .              +.     .-..+.|+++.+++...+++.| |++.+.+
T Consensus        96 pgG~l~i~~~~~~~~~------------~--------------~~-----~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~  143 (224)
T smart00828       96 DGGHLVLADFIANLLS------------A--------------IE-----HEETTSYLVTREEWAELLARNN-LRVVEGV  143 (224)
T ss_pred             CCCEEEEEEcccccCc------------c--------------cc-----ccccccccCCHHHHHHHHHHCC-CeEEEeE
Confidence            9999998765332100            0              00     0113456899999999999999 9987776


Q ss_pred             EE
Q 016644          308 VF  309 (385)
Q Consensus       308 ~~  309 (385)
                      .+
T Consensus       144 ~~  145 (224)
T smart00828      144 DA  145 (224)
T ss_pred             EC
Confidence            55

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.59  E-value=1e-06  Score=81.11  Aligned_cols=166  Identities=14%  Similarity=0.222  Sum_probs=96.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCc-eeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPE-FSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~-~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +..+|+|+|||+|..+..+....               |. .+++.-|+...-....-+.+. .           ..+.-
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~---------------~~~~~~~~iD~~~~~~~~~~~~~~-~-----------~~~i~   91 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSA---------------PDRGKVTGVDFSSEMLEVAKKKSE-L-----------PLNIE   91 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhc---------------CCCceEEEEECCHHHHHHHHHHhc-c-----------CCCce
Confidence            45799999999999888775322               22 578888874322222222221 0           00111


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |.   .+++.+-.++++++|+++++..+|+..+..                                      .+|+...
T Consensus        92 ~~---~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~--------------------------------------~~l~~~~  130 (223)
T TIGR01934        92 FI---QADAEALPFEDNSFDAVTIAFGLRNVTDIQ--------------------------------------KALREMY  130 (223)
T ss_pred             EE---ecchhcCCCCCCcEEEEEEeeeeCCcccHH--------------------------------------HHHHHHH
Confidence            22   245555557888999999999999875522                                      3346678


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH-HHH--cCCcccccccccc----cccccCCHHHHHHHHH
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND-LVQ--EGLITGEKRDSFN----IPVYASSLQEFKEVVE  296 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~-mv~--eG~i~~e~~d~f~----~P~y~ps~~Ev~~~le  296 (385)
                      +.|+|||++++.-.-....        .. + ..+.+.+.. +..  .+..... .+.+.    ....+++.+|++..++
T Consensus       131 ~~L~~gG~l~~~~~~~~~~--------~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~  199 (223)
T TIGR01934       131 RVLKPGGRLVILEFSKPAN--------AL-L-KKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLK  199 (223)
T ss_pred             HHcCCCcEEEEEEecCCCc--------hh-h-HHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999998765433211        01 1 223333332 211  1111111 11111    1123679999999999


Q ss_pred             hcCceEecEEEEEe
Q 016644          297 ANGSFVINKLEVFK  310 (385)
Q Consensus       297 ~~gsF~i~~le~~~  310 (385)
                      +.| |++...+.+.
T Consensus       200 ~aG-f~~~~~~~~~  212 (223)
T TIGR01934       200 EAG-FEEVRYRSLT  212 (223)
T ss_pred             HcC-Cccceeeeee
Confidence            999 9987777654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.57  E-value=1.1e-06  Score=84.69  Aligned_cols=76  Identities=24%  Similarity=0.305  Sum_probs=45.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..+..+...+        .    .....+++-.|+..+.....-+..+.               .-|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~--------~----~~~~~~v~giD~s~~~l~~A~~~~~~---------------~~~  137 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADAL--------P----EITTMQLFGLDISKVAIKYAAKRYPQ---------------VTF  137 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhc--------c----cccCCeEEEECCCHHHHHHHHHhCCC---------------CeE
Confidence            34689999999999888876432        0    00124788899865444333222221               112


Q ss_pred             eccccCccccccCCCCcccEEEcccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFS  170 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~a  170 (385)
                      ..+   +..+--|+++++|+|+|..+
T Consensus       138 ~~~---d~~~lp~~~~sfD~I~~~~~  160 (272)
T PRK11088        138 CVA---SSHRLPFADQSLDAIIRIYA  160 (272)
T ss_pred             EEe---ecccCCCcCCceeEEEEecC
Confidence            222   43322378999999998654

>PRK06202 hypothetical protein; Provisional

Probab=98.53  E-value=1.3e-06  Score=81.91  Aligned_cols=165  Identities=15%  Similarity=0.164  Sum_probs=91.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|.++..+....    ++.       .|..+++..|+-.+.....-+....             .+--+
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~----~~~-------g~~~~v~gvD~s~~~l~~a~~~~~~-------------~~~~~  115 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWA----RRD-------GLRLEVTAIDPDPRAVAFARANPRR-------------PGVTF  115 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHH----HhC-------CCCcEEEEEcCCHHHHHHHHhcccc-------------CCCeE
Confidence            46799999999999888765322    111       1457899999866444333222211             00011


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..+....+   -++++++|+|+|+.+|||+.+. .                                   +..+|+.-++
T Consensus       116 ~~~~~~~l---~~~~~~fD~V~~~~~lhh~~d~-~-----------------------------------~~~~l~~~~r  156 (232)
T PRK06202        116 RQAVSDEL---VAEGERFDVVTSNHFLHHLDDA-E-----------------------------------VVRLLADSAA  156 (232)
T ss_pred             EEEecccc---cccCCCccEEEECCeeecCChH-H-----------------------------------HHHHHHHHHH
Confidence            11111111   1378899999999999998652 1                                   1223343444


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -++  |.+++.-+.+..          ..+ . +..........|.+..  -|....-.-+++.+|+.+.+++ | |++.
T Consensus       157 ~~~--~~~~i~dl~~~~----------~~~-~-~~~~~~~~~~~~~~~~--~d~~~s~~~~~~~~el~~ll~~-G-f~~~  218 (232)
T PRK06202        157 LAR--RLVLHNDLIRSR----------LAY-A-LFWAGTRLLSRSSFVH--TDGLLSVRRSYTPAELAALAPQ-G-WRVE  218 (232)
T ss_pred             hcC--eeEEEeccccCH----------HHH-H-HHHHHHHHhccCceee--ccchHHHHhhcCHHHHHHHhhC-C-CeEE
Confidence            444  556566666531          111 0 1111111112232211  1333344568999999999998 7 9988


Q ss_pred             EEEEEe
Q 016644          305 KLEVFK  310 (385)
Q Consensus       305 ~le~~~  310 (385)
                      +...|.
T Consensus       219 ~~~~~~  224 (232)
T PRK06202        219 RQWPFR  224 (232)
T ss_pred             ecccee
Confidence            877764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.53  E-value=6e-07  Score=82.50  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=62.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|.+++.+.+        +         ..+|+.-|+..+.-..+-+....           ....++  
T Consensus        31 ~~~vLDiGcG~G~~a~~La~--------~---------g~~V~gvD~S~~~i~~a~~~~~~-----------~~~~~v--   80 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAA--------N---------GFDVTAWDKNPMSIANLERIKAA-----------ENLDNL--   80 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHH--------C---------CCEEEEEeCCHHHHHHHHHHHHH-----------cCCCcc--
Confidence            47899999999999988752        1         25778888854322222111110           001111  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+..++. .+-+++++|+|+|+.++||++.  .                                  |...+++.-++-
T Consensus        81 ~~~~~d~~-~~~~~~~fD~I~~~~~~~~~~~--~----------------------------------~~~~~l~~i~~~  123 (197)
T PRK11207         81 HTAVVDLN-NLTFDGEYDFILSTVVLMFLEA--K----------------------------------TIPGLIANMQRC  123 (197)
T ss_pred             eEEecChh-hCCcCCCcCEEEEecchhhCCH--H----------------------------------HHHHHHHHHHHH
Confidence            11223432 2323568999999999999742  1                                  234566777889


Q ss_pred             hccCCeEEEE
Q 016644          226 MKRCGSMFLV  235 (385)
Q Consensus       226 L~pGG~lvl~  235 (385)
                      |+|||++++.
T Consensus       124 LkpgG~~~~~  133 (197)
T PRK11207        124 TKPGGYNLIV  133 (197)
T ss_pred             cCCCcEEEEE
Confidence            9999996554

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.50  E-value=3.8e-08  Score=79.71  Aligned_cols=99  Identities=17%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             eeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecccc
Q 016644           70 ADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVP  149 (385)
Q Consensus        70 aDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vp  149 (385)
                      +|+|||+|.++..+....               |..+++..|.-.......-+.+..          ......-.+....
T Consensus         1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~~l~~a~~~~~~----------~~~~~~~~~~~~~   55 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPSMLERARERLAE----------LGNDNFERLRFDV   55 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSSTTSTTCCCHHH----------CT---EEEEE--S
T ss_pred             CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHHHHHHHHHHhhh----------cCCcceeEEEeec
Confidence            699999999999887433               568999999876554222111111          0000111111211


Q ss_pred             CccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 016644          150 GSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRC  229 (385)
Q Consensus       150 gSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  229 (385)
                      .+... ..+.+++|+|+++.+|||+.+                                      +..+|+.-++-|+||
T Consensus        56 ~~~~~-~~~~~~fD~V~~~~vl~~l~~--------------------------------------~~~~l~~~~~~L~pg   96 (99)
T PF08242_consen   56 LDLFD-YDPPESFDLVVASNVLHHLED--------------------------------------IEAVLRNIYRLLKPG   96 (99)
T ss_dssp             SS----CCC----SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS
T ss_pred             CChhh-cccccccceehhhhhHhhhhh--------------------------------------HHHHHHHHHHHcCCC
Confidence            22111 123379999999999999922                                      334557788999999


Q ss_pred             CeE
Q 016644          230 GSM  232 (385)
Q Consensus       230 G~l  232 (385)
                      |+|
T Consensus        97 G~l   99 (99)
T PF08242_consen   97 GIL   99 (99)
T ss_dssp             -EE
T ss_pred             CCC
Confidence            986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.50  E-value=1.5e-06  Score=79.35  Aligned_cols=28  Identities=11%  Similarity=0.249  Sum_probs=24.7

Q ss_pred             ccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          282 PVYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       282 P~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      +..+.+.+|+.+.+++.| |++.....+.
T Consensus       142 ~~~~~s~~~~~~ll~~~G-f~v~~~~~~~  169 (194)
T TIGR02081       142 NIHFCTIADFEDLCGELN-LRILDRAAFD  169 (194)
T ss_pred             CcccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence            356889999999999999 9999988875

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.41  E-value=6.7e-07  Score=82.55  Aligned_cols=158  Identities=12%  Similarity=0.102  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644           36 AQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN  115 (385)
Q Consensus        36 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N  115 (385)
                      +|+.+.....|.+-........ .+..  ...+|+|+|||+|..+..+....               |..+|+..|.-..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s~~   75 (202)
T PRK00121         14 GQQRAIEELWPRLSPAPLDWAE-LFGN--DAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVHEP   75 (202)
T ss_pred             chhhhhcccchhhcCCCCCHHH-HcCC--CCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEechH
Confidence            4666666777777443322211 1222  45789999999999998875322               5568899998654


Q ss_pred             chHHHHhcCCCCCCchhHhhhcCcCCce-eeccccCcc---ccccCCCCcccEEEcccccccccCCchhhhcccccccCC
Q 016644          116 DFNTLFQLLPPIGSSMEECLASDTHRSY-FAAGVPGSF---YRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNK  191 (385)
Q Consensus       116 DFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~~~vpgSF---y~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nk  191 (385)
                      ....+-+.+..           ....++ |+.   ++.   +.+.++++++|.++++...+|...... .          
T Consensus        76 ~i~~a~~~~~~-----------~~~~~v~~~~---~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-~----------  130 (202)
T PRK00121         76 GVGKALKKIEE-----------EGLTNLRLLC---GDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-K----------  130 (202)
T ss_pred             HHHHHHHHHHH-----------cCCCCEEEEe---cCHHHHHHHHcCccccceEEEECCCCCCCcccc-c----------
Confidence            44444333211           011122 222   343   234578999999999988888653211 0          


Q ss_pred             CceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCc
Q 016644          192 GKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLI  271 (385)
Q Consensus       192 g~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i  271 (385)
                      .                   +.+...||+.-++-|+|||++++.....                ..+...+..|...|+-
T Consensus       131 ~-------------------~~~~~~~l~~i~~~LkpgG~l~i~~~~~----------------~~~~~~~~~~~~~g~~  175 (202)
T PRK00121        131 R-------------------RLVQPEFLALYARKLKPGGEIHFATDWE----------------GYAEYMLEVLSAEGGF  175 (202)
T ss_pred             c-------------------ccCCHHHHHHHHHHcCCCCEEEEEcCCH----------------HHHHHHHHHHHhCccc
Confidence            0                   0023456777889999999999876433                3356666667677753

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.38  E-value=3.3e-06  Score=81.08  Aligned_cols=153  Identities=13%  Similarity=0.088  Sum_probs=89.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ..-+|+|+|||+|..++.+...+              .+..+|+.-|+-.+.....-+.....           ...++ 
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~--------------g~~~~v~gvD~s~~~l~~A~~~~~~~-----------g~~~v-  130 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRV--------------GPTGKVIGVDMTPEMLAKARANARKA-----------GYTNV-  130 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEECCCHHHHHHHHHHHHHc-----------CCCCE-
Confidence            34699999999998776554221              13457888888544433332222110           01111 


Q ss_pred             eccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                       ..+.+++ +.+ +|++++|+++|+.++||..+.+..+                                      +.-.
T Consensus       131 -~~~~~d~-~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l--------------------------------------~~~~  170 (272)
T PRK11873        131 -EFRLGEI-EALPVADNSVDVIISNCVINLSPDKERVF--------------------------------------KEAF  170 (272)
T ss_pred             -EEEEcch-hhCCCCCCceeEEEEcCcccCCCCHHHHH--------------------------------------HHHH
Confidence             1122353 333 6788999999999999975544333                                      3457


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||+|++.-+.....         ..  ..+...+. +. .|.           .....+.+|+...+++.| |..
T Consensus       171 r~LkpGG~l~i~~~~~~~~---------~~--~~~~~~~~-~~-~~~-----------~~~~~~~~e~~~~l~~aG-f~~  225 (272)
T PRK11873        171 RVLKPGGRFAISDVVLRGE---------LP--EEIRNDAE-LY-AGC-----------VAGALQEEEYLAMLAEAG-FVD  225 (272)
T ss_pred             HHcCCCcEEEEEEeeccCC---------CC--HHHHHhHH-HH-hcc-----------ccCCCCHHHHHHHHHHCC-CCc
Confidence            8899999999875443211         00  11222222 11 111           123457899999999999 877


Q ss_pred             cEEEE
Q 016644          304 NKLEV  308 (385)
Q Consensus       304 ~~le~  308 (385)
                      .++..
T Consensus       226 v~i~~  230 (272)
T PRK11873        226 ITIQP  230 (272)
T ss_pred             eEEEe
Confidence            66554

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.32  E-value=1.3e-05  Score=75.17  Aligned_cols=199  Identities=15%  Similarity=0.202  Sum_probs=109.2

Q ss_pred             EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644           68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG  147 (385)
Q Consensus        68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~  147 (385)
                      .+.|+|||+|-.++.+.        +.+         -+|+-.|+-.-+.+-+-+.-+.                . .+-
T Consensus        36 ~a~DvG~G~Gqa~~~ia--------e~~---------k~VIatD~s~~mL~~a~k~~~~----------------~-y~~   81 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIA--------EHY---------KEVIATDVSEAMLKVAKKHPPV----------------T-YCH   81 (261)
T ss_pred             eEEEeccCCCcchHHHH--------Hhh---------hhheeecCCHHHHHHhhcCCCc----------------c-ccc
Confidence            78999999995555544        222         4678888866554422221111                1 112


Q ss_pred             ccCccc----ccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          148 VPGSFY----RRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       148 vpgSFy----~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +|-++-    ..| =+++|||+|.+.-|+||.                                       |+.+|.+.-
T Consensus        82 t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF---------------------------------------dle~fy~~~  122 (261)
T KOG3010|consen   82 TPSTMSSDEMVDLLGGEESVDLITAAQAVHWF---------------------------------------DLERFYKEA  122 (261)
T ss_pred             CCccccccccccccCCCcceeeehhhhhHHhh---------------------------------------chHHHHHHH
Confidence            333333    223 359999999999999996                                       466777888


Q ss_pred             HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcC---
Q 016644          223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG---  299 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~g---  299 (385)
                      .+.|++.|-+++...=+++....         .+ .-..+..+...           ..|.+   .....+.+...-   
T Consensus       123 ~rvLRk~Gg~iavW~Y~dd~v~~---------pE-~dsv~~r~~~~-----------~~p~~---r~~~~n~~fdgy~~~  178 (261)
T KOG3010|consen  123 YRVLRKDGGLIAVWNYNDDFVDW---------PE-FDSVMLRLYDS-----------TLPYW---RSPLRNLLFDGYKTI  178 (261)
T ss_pred             HHHcCCCCCEEEEEEccCCCcCC---------HH-HHHHHHHHhhc-----------cCchh---hhHHHHhhccccccc
Confidence            99999999776666544322211         12 22222222221           13443   222222222211   


Q ss_pred             ceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhhhHHhhhC-hHHHHHHHHHHHHHhhch
Q 016644          300 SFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIG-DQLSEELFKRVERRGSCY  365 (385)
Q Consensus       300 sF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep~l~~hfg-~~i~delf~r~~~~~~~~  365 (385)
                      -|..+++..+....|.....+.  .-.-.++..++|+|..-.=.+|=| +.|.+.+..++++.-...
T Consensus       179 ~F~~e~v~~~s~~~~~~l~~~~--~lsl~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~~~~~~  243 (261)
T KOG3010|consen  179 EFPFESVGMGSQGKPKTLEIPH--TLSLEGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEEAWGED  243 (261)
T ss_pred             cccccccCCCCCCCceeehhhH--HHHHHHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHhhcccc
Confidence            1333333332211111111111  123456888999999877777766 456677888888766654

>PRK06922 hypothetical protein; Provisional

Probab=98.31  E-value=1.1e-06  Score=93.28  Aligned_cols=115  Identities=17%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..+..+..        .+       |..+++.-|+..+.-..+-+.+...           ..+..++
T Consensus       419 g~rVLDIGCGTG~ls~~LA~--------~~-------P~~kVtGIDIS~~MLe~Ararl~~~-----------g~~ie~I  472 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEE--------ET-------EDKRIYGIDISENVIDTLKKKKQNE-----------GRSWNVI  472 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHHhhhc-----------CCCeEEE
Confidence            47999999999987766542        22       5689999999876555543333210           0111122


Q ss_pred             ccccCccc--cccCCCCcccEEEcccccccc-cCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFY--RRLFPTRSIDFFHSAFSLHWL-SQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       146 ~~vpgSFy--~rLfP~~Svd~~~Ss~alHWL-S~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      .+   +..  ...|+++++|++++++++||+ +.+|..-.     .+                     -.+|...+|+.-
T Consensus       473 ~g---Da~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f---------------------~~edl~kiLreI  523 (677)
T PRK06922        473 KG---DAINLSSSFEKESVDTIVYSSILHELFSYIEYEGK-----KF---------------------NHEVIKKGLQSA  523 (677)
T ss_pred             Ec---chHhCccccCCCCEEEEEEchHHHhhhhhcccccc-----cc---------------------cHHHHHHHHHHH
Confidence            22   322  223789999999999999975 44442110     00                     024678888889


Q ss_pred             HhhhccCCeEEEE
Q 016644          223 SKEMKRCGSMFLV  235 (385)
Q Consensus       223 a~EL~pGG~lvl~  235 (385)
                      .+.|+|||++++.
T Consensus       524 ~RVLKPGGrLII~  536 (677)
T PRK06922        524 YEVLKPGGRIIIR  536 (677)
T ss_pred             HHHcCCCcEEEEE
Confidence            9999999999986

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.30  E-value=4.1e-06  Score=79.19  Aligned_cols=172  Identities=18%  Similarity=0.262  Sum_probs=103.2

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC-CCCCCchhHhhhcCcCCc
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL-PPIGSSMEECLASDTHRS  142 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l-~~~~~~~~~~~~~~~~~~  142 (385)
                      ++.++++|.+||||-.|++++..+-++    .    + .-+-+|+..|.-.++.+---+.- ..      . ++. +.+-
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~----~----~-~~~~~V~v~Dinp~mL~vgkqRa~~~------~-l~~-~~~~  161 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQ----F----G-DRESKVTVLDINPHMLAVGKQRAKKR------P-LKA-SSRV  161 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccc----c----C-CCCceEEEEeCCHHHHHHHHHHHhhc------C-CCc-CCce
Confidence            456999999999999999998655221    1    1 23467888888665544322211 00      0 000 0112


Q ss_pred             eeeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          143 YFAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       143 ~f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      .|+.   |+ -+.| ||++++|...+++.+--+.+.+..+.+                                      
T Consensus       162 ~w~~---~d-AE~LpFdd~s~D~yTiafGIRN~th~~k~l~E--------------------------------------  199 (296)
T KOG1540|consen  162 EWVE---GD-AEDLPFDDDSFDAYTIAFGIRNVTHIQKALRE--------------------------------------  199 (296)
T ss_pred             EEEe---CC-cccCCCCCCcceeEEEecceecCCCHHHHHHH--------------------------------------
Confidence            3433   35 6788 999999999999999988887777632                                      


Q ss_pred             HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHH-H-HHHcCCccccccccccc----ccccCCHHHHHHHH
Q 016644          222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWN-D-LVQEGLITGEKRDSFNI----PVYASSLQEFKEVV  295 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~-~-mv~eG~i~~e~~d~f~~----P~y~ps~~Ev~~~l  295 (385)
                      -++.|||||++.+.-+..-+..+-          +.+.++|. + +.--|-+=....+++..    ---||+.+|+...+
T Consensus       200 AYRVLKpGGrf~cLeFskv~~~~l----------~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~mi  269 (296)
T KOG1540|consen  200 AYRVLKPGGRFSCLEFSKVENEPL----------KWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMI  269 (296)
T ss_pred             HHHhcCCCcEEEEEEccccccHHH----------HHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHH
Confidence            468999999999888777431100          11122111 0 00011110111111111    12489999999999


Q ss_pred             HhcCceEecE
Q 016644          296 EANGSFVINK  305 (385)
Q Consensus       296 e~~gsF~i~~  305 (385)
                      ++.| |....
T Consensus       270 edaG-F~~~~  278 (296)
T KOG1540|consen  270 EDAG-FSSVN  278 (296)
T ss_pred             HHcC-Ccccc
Confidence            9999 87654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.29  E-value=1.5e-06  Score=79.65  Aligned_cols=103  Identities=16%  Similarity=0.258  Sum_probs=63.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      +.+|+|+|||+|.+++.+..        +         ..+|+.-|+..+.-..+-+....           ... ++  
T Consensus        31 ~~~vLDiGcG~G~~a~~la~--------~---------g~~V~~iD~s~~~l~~a~~~~~~-----------~~~-~v--   79 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSL--------A---------GYDVRAWDHNPASIASVLDMKAR-----------ENL-PL--   79 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHH-----------hCC-Cc--
Confidence            57999999999999998862        1         25788888865433333221110           000 11  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ...-.+. ...-+++++|+++|+.++||++..                                    ++..+++..++-
T Consensus        80 ~~~~~d~-~~~~~~~~fD~I~~~~~~~~~~~~------------------------------------~~~~~l~~~~~~  122 (195)
T TIGR00477        80 RTDAYDI-NAAALNEDYDFIFSTVVFMFLQAG------------------------------------RVPEIIANMQAH  122 (195)
T ss_pred             eeEeccc-hhccccCCCCEEEEecccccCCHH------------------------------------HHHHHHHHHHHH
Confidence            0111121 122234689999999999998431                                    234456677889


Q ss_pred             hccCCeEEEEe
Q 016644          226 MKRCGSMFLVC  236 (385)
Q Consensus       226 L~pGG~lvl~~  236 (385)
                      |+|||++++..
T Consensus       123 LkpgG~lli~~  133 (195)
T TIGR00477       123 TRPGGYNLIVA  133 (195)
T ss_pred             hCCCcEEEEEE
Confidence            99999965544

Part of a tellurite-reducing operon tehA and tehB

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.25  E-value=3.3e-05  Score=75.61  Aligned_cols=154  Identities=13%  Similarity=0.193  Sum_probs=89.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.+        ++       |..+++.-|+|. .....-+.+...          .-..+  
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~--------~~-------p~~~~~~~D~~~-~~~~a~~~~~~~----------gl~~r--  200 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLK--------HF-------PELDSTILNLPG-AIDLVNENAAEK----------GVADR--  200 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHH--------HC-------CCCEEEEEecHH-HHHHHHHHHHhC----------Cccce--
Confidence            457999999999988877763        33       678888889863 222222222110          00112  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +..++++|++.-+|.  .|+++.+..+|-..+  .                                  +-..+|+.-++
T Consensus       201 v~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~--~----------------------------------~~~~il~~~~~  242 (306)
T TIGR02716       201 MRGIAVDIYKESYPE--ADAVLFCRILYSANE--Q----------------------------------LSTIMCKKAFD  242 (306)
T ss_pred             EEEEecCccCCCCCC--CCEEEeEhhhhcCCh--H----------------------------------HHHHHHHHHHH
Confidence            234677988755665  499998888884322  1                                  11234566789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      .|+|||++++.=.-..+.. .      ..+ ..+...   +..-|+..        .+..+++.+|+.+++++.| |+..
T Consensus       243 ~L~pgG~l~i~d~~~~~~~-~------~~~-~~~~~~---~~~~~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v  302 (306)
T TIGR02716       243 AMRSGGRLLILDMVIDDPE-N------PNF-DYLSHY---ILGAGMPF--------SVLGFKEQARYKEILESLG-YKDV  302 (306)
T ss_pred             hcCCCCEEEEEEeccCCCC-C------chh-hHHHHH---HHHccccc--------ccccCCCHHHHHHHHHHcC-CCee
Confidence            9999999988744332111 0      111 112222   11122110        1224566899999999999 8643

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.25  E-value=1.4e-05  Score=74.18  Aligned_cols=158  Identities=13%  Similarity=0.121  Sum_probs=86.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.+.                 ...++..|+........-+.+...          ...+.-|
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~-----------------~~~v~~iD~s~~~~~~a~~~~~~~----------~~~~~~~   97 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL-----------------GANVTGIDASEENIEVAKLHAKKD----------PLLKIEY   97 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCHHHHHHHHHHHHHc----------CCCceEE
Confidence            4689999999999877765421                 124778887543333222222110          0000112


Q ss_pred             eccccCccccccCC-CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFP-TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP-~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..   +++-+-..+ ++++|+++++.++|+..+..                                      .+|+...
T Consensus        98 ~~---~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~--------------------------------------~~l~~~~  136 (224)
T TIGR01983        98 RC---TSVEDLAEKGAKSFDVVTCMEVLEHVPDPQ--------------------------------------AFIRACA  136 (224)
T ss_pred             Ee---CCHHHhhcCCCCCccEEEehhHHHhCCCHH--------------------------------------HHHHHHH
Confidence            21   232222222 47999999999999875422                                      2345567


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHH-HHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWN-DLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~-~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      +-|+|||.+++....+..          ..+   ....+. ++.. +.....    ......+.+.+++.+.+++.| |+
T Consensus       137 ~~L~~gG~l~i~~~~~~~----------~~~---~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~l~~~l~~~G-~~  197 (224)
T TIGR01983       137 QLLKPGGILFFSTINRTP----------KSY---LLAIVGAEYIL-RIVPKG----THDWEKFIKPSELTSWLESAG-LR  197 (224)
T ss_pred             HhcCCCcEEEEEecCCCc----------hHH---HHHHHhhhhhh-hcCCCC----cCChhhcCCHHHHHHHHHHcC-Ce
Confidence            789999999887654320          001   111111 1111 111110    011123568999999999998 99


Q ss_pred             ecEEEEE
Q 016644          303 INKLEVF  309 (385)
Q Consensus       303 i~~le~~  309 (385)
                      |..+..+
T Consensus       198 i~~~~~~  204 (224)
T TIGR01983       198 VKDVKGL  204 (224)
T ss_pred             eeeeeeE
Confidence            8877644

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.23  E-value=4.3e-06  Score=68.69  Aligned_cols=107  Identities=15%  Similarity=0.181  Sum_probs=67.7

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-ee
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-FA  145 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~  145 (385)
                      -+|+|+|||+|..++.+.+        ..       |..+|+--|.-.......-+....          .....++ |.
T Consensus         3 ~~vLDlGcG~G~~~~~l~~--------~~-------~~~~v~gvD~s~~~~~~a~~~~~~----------~~~~~~i~~~   57 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALAR--------LF-------PGARVVGVDISPEMLEIARERAAE----------EGLSDRITFV   57 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHH--------HH-------TTSEEEEEESSHHHHHHHHHHHHH----------TTTTTTEEEE
T ss_pred             CEEEEEcCcCCHHHHHHHh--------cC-------CCCEEEEEeCCHHHHHHHHHHHHh----------cCCCCCeEEE
Confidence            5899999999999998874        22       567888888855444444333310          0011222 33


Q ss_pred             ccccCccccccCCCCcccEEEccc-ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAF-SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~-alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .   +++-...-....+|+++++. ++|++-..                                   .+...+|+...+
T Consensus        58 ~---~d~~~~~~~~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~   99 (112)
T PF12847_consen   58 Q---GDAEFDPDFLEPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLERIRR   99 (112)
T ss_dssp             E---SCCHGGTTTSSCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHHHHH
T ss_pred             E---CccccCcccCCCCCEEEECCCccccccch-----------------------------------hHHHHHHHHHHH
Confidence            3   35511122334599999999 77754322                                   235566788899


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+|||+|++..
T Consensus       100 ~L~pgG~lvi~~  111 (112)
T PF12847_consen  100 LLKPGGRLVINT  111 (112)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             hcCCCcEEEEEE
Confidence            999999999863

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.22  E-value=3.1e-05  Score=74.98  Aligned_cols=155  Identities=19%  Similarity=0.281  Sum_probs=81.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      -.+|+|+|||-|..++.+.+        ++        ..+|.--.|..+....+-+.+...          +-...+-+
T Consensus        63 G~~vLDiGcGwG~~~~~~a~--------~~--------g~~v~gitlS~~Q~~~a~~~~~~~----------gl~~~v~v  116 (273)
T PF02353_consen   63 GDRVLDIGCGWGGLAIYAAE--------RY--------GCHVTGITLSEEQAEYARERIREA----------GLEDRVEV  116 (273)
T ss_dssp             T-EEEEES-TTSHHHHHHHH--------HH----------EEEEEES-HHHHHHHHHHHHCS----------TSSSTEEE
T ss_pred             CCEEEEeCCCccHHHHHHHH--------Hc--------CcEEEEEECCHHHHHHHHHHHHhc----------CCCCceEE
Confidence            47999999999999998873        33        245665566544433332221110          00111211


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                        .=.+ |..+ +. ++|-|+|--++.-+..                                    +++..|++..++-
T Consensus       117 --~~~D-~~~~-~~-~fD~IvSi~~~Ehvg~------------------------------------~~~~~~f~~~~~~  155 (273)
T PF02353_consen  117 --RLQD-YRDL-PG-KFDRIVSIEMFEHVGR------------------------------------KNYPAFFRKISRL  155 (273)
T ss_dssp             --EES--GGG-----S-SEEEEESEGGGTCG------------------------------------GGHHHHHHHHHHH
T ss_pred             --EEee-cccc-CC-CCCEEEEEechhhcCh------------------------------------hHHHHHHHHHHHh
Confidence              1125 3343 22 9999999877655411                                    2366788889999


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccc-ccCCHHHHHHHHHhcCceEec
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPV-YASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      |+|||+|++...+..............           +++.          .+.+|- +.|+.+|+...+++.| |+|.
T Consensus       156 LkpgG~~~lq~i~~~~~~~~~~~~~~~-----------~~i~----------kyiFPgg~lps~~~~~~~~~~~~-l~v~  213 (273)
T PF02353_consen  156 LKPGGRLVLQTITHRDPPYHAERRSSS-----------DFIR----------KYIFPGGYLPSLSEILRAAEDAG-LEVE  213 (273)
T ss_dssp             SETTEEEEEEEEEE--HHHHHCTTCCC-----------HHHH----------HHTSTTS---BHHHHHHHHHHTT--EEE
T ss_pred             cCCCcEEEEEecccccccchhhcCCCc-----------eEEE----------EeeCCCCCCCCHHHHHHHHhcCC-EEEE
Confidence            999999999887764210000000000           1111          222343 5689999999999888 9988


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      ..+.+
T Consensus       214 ~~~~~  218 (273)
T PF02353_consen  214 DVENL  218 (273)
T ss_dssp             EEEE-
T ss_pred             EEEEc
Confidence            77764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.19  E-value=8.9e-06  Score=76.12  Aligned_cols=156  Identities=12%  Similarity=0.054  Sum_probs=86.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.+        .         ..+++..|+..+.....-+.+...           ....-|
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~iD~s~~~~~~a~~~~~~~-----------~~~~~~   99 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMAR--------L---------GADVTGIDASEENIEVARLHALES-----------GLKIDY   99 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHH--------c---------CCeEEEEcCCHHHHHHHHHHHHHc-----------CCceEE
Confidence            357899999999987665531        1         135777787544333222211100           000111


Q ss_pred             eccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..   +++-.-. .+++++|+++++..++++.+..                                      .+|+...
T Consensus       100 ~~---~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~--------------------------------------~~l~~~~  138 (233)
T PRK05134        100 RQ---TTAEELAAEHPGQFDVVTCMEMLEHVPDPA--------------------------------------SFVRACA  138 (233)
T ss_pred             Ee---cCHHHhhhhcCCCccEEEEhhHhhccCCHH--------------------------------------HHHHHHH
Confidence            11   1221111 3568999999999988875422                                      2345567


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHH-HHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAW-NDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al-~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      +-|+|||+|+++..++..          ..+   ....+ ...+..+. ..    .......+.+++|+.+++++.| |+
T Consensus       139 ~~L~~gG~l~v~~~~~~~----------~~~---~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~  199 (233)
T PRK05134        139 KLVKPGGLVFFSTLNRNL----------KSY---LLAIVGAEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LE  199 (233)
T ss_pred             HHcCCCcEEEEEecCCCh----------HHH---HHHHhhHHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-Ce
Confidence            889999999988765421          000   11111 11222211 10    0112235678999999999999 99


Q ss_pred             ecEEEE
Q 016644          303 INKLEV  308 (385)
Q Consensus       303 i~~le~  308 (385)
                      +.....
T Consensus       200 ~v~~~~  205 (233)
T PRK05134        200 VQDITG  205 (233)
T ss_pred             Eeeeee
Confidence            876653

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.17  E-value=3.8e-05  Score=71.39  Aligned_cols=29  Identities=10%  Similarity=0.292  Sum_probs=24.9

Q ss_pred             cccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          281 IPVYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       281 ~P~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      .+.++++++|+..++++.| |++...+.+.
T Consensus       180 ~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~  208 (219)
T TIGR02021       180 TSAYLHPMTDLERALGELG-WKIVREGLVS  208 (219)
T ss_pred             cceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence            4678899999999999999 9998887553

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.17  E-value=4.7e-06  Score=75.77  Aligned_cols=131  Identities=15%  Similarity=0.096  Sum_probs=77.8

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+..        ..       |..+|+.-|.-.+.-..+-+.+..           ....++  
T Consensus        43 ~~~vLDiGcGtG~~s~~la~--------~~-------~~~~V~~iD~s~~~~~~a~~~~~~-----------~~~~~i--   94 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAI--------AR-------PELKLTLLESNHKKVAFLREVKAE-----------LGLNNV--   94 (181)
T ss_pred             CCeEEEecCCCCccHHHHHH--------HC-------CCCeEEEEeCcHHHHHHHHHHHHH-----------hCCCCe--
Confidence            47899999999999888741        11       446788889865543322222110           001122  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+.++. +.+.+.+++|+|+|.. +|++   +.                                      ++..-.+-
T Consensus        95 ~~i~~d~-~~~~~~~~fD~I~s~~-~~~~---~~--------------------------------------~~~~~~~~  131 (181)
T TIGR00138        95 EIVNGRA-EDFQHEEQFDVITSRA-LASL---NV--------------------------------------LLELTLNL  131 (181)
T ss_pred             EEEecch-hhccccCCccEEEehh-hhCH---HH--------------------------------------HHHHHHHh
Confidence            1233353 3355678999999865 4332   11                                      22333567


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccc
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIP  282 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P  282 (385)
                      |+|||++++.. |..           .  ...+....+.+...| +...+.++++.|
T Consensus       132 LkpgG~lvi~~-~~~-----------~--~~~~~~~~e~~~~~~-~~~~~~~~~~~~  173 (181)
T TIGR00138       132 LKVGGYFLAYK-GKK-----------Y--LDEIEEAKRKCQVLG-VEPLEVPPLTGP  173 (181)
T ss_pred             cCCCCEEEEEc-CCC-----------c--HHHHHHHHHhhhhcC-ceEeeccccCCC
Confidence            99999998774 321           0  022555556677778 566777888888

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK05785 hypothetical protein; Provisional

Probab=98.16  E-value=1e-05  Score=76.12  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=52.3

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||||.++..+...        +        ..+|+.-|+-.++-...-+.                 .. ++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~--------~--------~~~v~gvD~S~~Ml~~a~~~-----------------~~-~~   97 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKV--------F--------KYYVVALDYAENMLKMNLVA-----------------DD-KV   97 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHh--------c--------CCEEEEECCCHHHHHHHHhc-----------------cc-eE
Confidence            468999999999988776421        1        24788888765443322110                 01 12


Q ss_pred             ccccCcccccc-CCCCcccEEEcccccccccCCchhh
Q 016644          146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESA  181 (385)
Q Consensus       146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l  181 (385)
                         -+++ +.+ ||++|+|+++|+++|||+.+.+..+
T Consensus        98 ---~~d~-~~lp~~d~sfD~v~~~~~l~~~~d~~~~l  130 (226)
T PRK05785         98 ---VGSF-EALPFRDKSFDVVMSSFALHASDNIEKVI  130 (226)
T ss_pred             ---Eech-hhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence               2343 345 8899999999999999988765554

>TIGR03438 probable methyltransferase

Probab=98.15  E-value=9.1e-06  Score=79.64  Aligned_cols=114  Identities=16%  Similarity=0.179  Sum_probs=75.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..|..+++...              ...+++--|+....-....+.+..-            .+.+=
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~--------------~~~~~~~iDiS~~mL~~a~~~l~~~------------~p~~~  116 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALR--------------QPARYVPIDISADALKESAAALAAD------------YPQLE  116 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhc--------------cCCeEEEEECCHHHHHHHHHHHHhh------------CCCce
Confidence            347899999999999998885441              1378899999765544444444310            11122


Q ss_pred             eccccCcccccc-CCCC----cccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTR----SIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~----Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      +.++-|+|.+-+ +|..    ...++++.+++++++  |.                                  |...||
T Consensus       117 v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~~----------------------------------e~~~~L  160 (301)
T TIGR03438       117 VHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT--PE----------------------------------EAVAFL  160 (301)
T ss_pred             EEEEEEcccchhhhhcccccCCeEEEEecccccCCC--HH----------------------------------HHHHHH
Confidence            234556876543 3333    456788888999985  22                                  345678


Q ss_pred             HHHHhhhccCCeEEEEeccCC
Q 016644          220 GARSKEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g~~  240 (385)
                      +.-++.|+|||+|++.+-...
T Consensus       161 ~~i~~~L~pgG~~lig~d~~~  181 (301)
T TIGR03438       161 RRIRQLLGPGGGLLIGVDLVK  181 (301)
T ss_pred             HHHHHhcCCCCEEEEeccCCC
Confidence            888899999999998775554

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.14  E-value=4.7e-06  Score=72.95  Aligned_cols=105  Identities=16%  Similarity=0.172  Sum_probs=69.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh---cCCCCCCchhHhhhcCcCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ---LLPPIGSSMEECLASDTHR  141 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~---~l~~~~~~~~~~~~~~~~~  141 (385)
                      +..+|+|+|||+|..++.+....       +       |..+++.-|+-....+..-+   .+.-             .+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~-------~-------~~~~i~gvD~s~~~i~~a~~~~~~~~~-------------~n   55 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKEL-------N-------PGAKIIGVDISEEMIEYAKKRAKELGL-------------DN   55 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHS-------T-------TTSEEEEEESSHHHHHHHHHHHHHTTS-------------TT
T ss_pred             CCCEEEEecCcCcHHHHHHHHhc-------C-------CCCEEEEEECcHHHHHHhhcccccccc-------------cc
Confidence            46899999999999998876311       1       45789999986544333322   2221             11


Q ss_pred             ceeeccccCcccc--ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          142 SYFAAGVPGSFYR--RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       142 ~~f~~~vpgSFy~--rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      --|..+   ++.+  +.++ +.+|+++++.++||+.+....                                      |
T Consensus        56 i~~~~~---d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~--------------------------------------l   93 (152)
T PF13847_consen   56 IEFIQG---DIEDLPQELE-EKFDIIISNGVLHHFPDPEKV--------------------------------------L   93 (152)
T ss_dssp             EEEEES---BTTCGCGCSS-TTEEEEEEESTGGGTSHHHHH--------------------------------------H
T ss_pred             cceEEe---ehhccccccC-CCeeEEEEcCchhhccCHHHH--------------------------------------H
Confidence            123333   5433  1133 899999999999998664333                                      3


Q ss_pred             HHHHhhhccCCeEEEEecc
Q 016644          220 GARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g  238 (385)
                      +.-.+-|++||.+++....
T Consensus        94 ~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   94 KNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             HHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHcCCCcEEEEEECC
Confidence            5568899999999988866

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.14  E-value=1.1e-05  Score=74.73  Aligned_cols=106  Identities=17%  Similarity=0.259  Sum_probs=65.1

Q ss_pred             CCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCce
Q 016644           26 GEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEF  105 (385)
Q Consensus        26 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~  105 (385)
                      |..-..+|. .+. .+.....++.+.+..+        ++..+|+|+|||+|.++..+....               |..
T Consensus        14 g~~~~~rn~-~~~-~~~~~~~~~~~~l~~~--------~~~~~VLDiGCG~G~~~~~L~~~~---------------~~~   68 (204)
T TIGR03587        14 GKEYIDRNS-RQS-LVAAKLAMFARALNRL--------PKIASILELGANIGMNLAALKRLL---------------PFK   68 (204)
T ss_pred             cchhhhccc-cHH-HHHHHHHHHHHHHHhc--------CCCCcEEEEecCCCHHHHHHHHhC---------------CCC
Confidence            444444444 222 2344555666655444        245689999999999888775221               446


Q ss_pred             eEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEccccccccc
Q 016644          106 SAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS  175 (385)
Q Consensus       106 qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS  175 (385)
                      +++.-|+-.+.....-+.++.              .. +   +.++..+ -++++++|+|+|+.+||+++
T Consensus        69 ~v~giDiS~~~l~~A~~~~~~--------------~~-~---~~~d~~~-~~~~~sfD~V~~~~vL~hl~  119 (204)
T TIGR03587        69 HIYGVEINEYAVEKAKAYLPN--------------IN-I---IQGSLFD-PFKDNFFDLVLTKGVLIHIN  119 (204)
T ss_pred             eEEEEECCHHHHHHHHhhCCC--------------Cc-E---EEeeccC-CCCCCCEEEEEECChhhhCC
Confidence            788888865444443332321              11 1   2345555 67899999999999998874

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.13  E-value=5.4e-06  Score=80.58  Aligned_cols=103  Identities=21%  Similarity=0.328  Sum_probs=64.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      +-+|+|+|||+|.|++.+..                 ...+|+.-|.....-..+-+....           ... ++  
T Consensus       121 ~~~vLDlGcG~G~~~~~la~-----------------~g~~V~avD~s~~ai~~~~~~~~~-----------~~l-~v--  169 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLAL-----------------LGFDVTAVDINQQSLENLQEIAEK-----------ENL-NI--  169 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHH-----------------CCCEEEEEECCHHHHHHHHHHHHH-----------cCC-ce--
Confidence            34899999999999988752                 125788888754333322221110           000 11  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+.++.- ..-+++++|+|+|+.++|+++.  .                                  ++..+|+.-.+-
T Consensus       170 ~~~~~D~~-~~~~~~~fD~I~~~~vl~~l~~--~----------------------------------~~~~~l~~~~~~  212 (287)
T PRK12335        170 RTGLYDIN-SASIQEEYDFILSTVVLMFLNR--E----------------------------------RIPAIIKNMQEH  212 (287)
T ss_pred             EEEEechh-cccccCCccEEEEcchhhhCCH--H----------------------------------HHHHHHHHHHHh
Confidence            11122322 2223789999999999999842  1                                  245566778899


Q ss_pred             hccCCeEEEEe
Q 016644          226 MKRCGSMFLVC  236 (385)
Q Consensus       226 L~pGG~lvl~~  236 (385)
                      |+|||++++..
T Consensus       213 LkpgG~~l~v~  223 (287)
T PRK12335        213 TNPGGYNLIVC  223 (287)
T ss_pred             cCCCcEEEEEE
Confidence            99999977654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.13  E-value=3.1e-05  Score=71.93  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=68.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..|..+.+..              .+.-+|+.-|+-.  .+    .++               +-.+ 
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~--------------~~~~~V~aVDi~~--~~----~~~---------------~v~~-   95 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQI--------------GDKGRVIACDILP--MD----PIV---------------GVDF-   95 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHc--------------CCCceEEEEeccc--cc----CCC---------------CcEE-
Confidence            4689999999999887776322              1335788888732  11    111               1112 


Q ss_pred             ccccCccccc--------cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYRR--------LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAA  217 (385)
Q Consensus       146 ~~vpgSFy~r--------LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~  217 (385)
                        +-+++...        -++++++|+|+|+.+.||... |.  .|                   .    ..+ ......
T Consensus        96 --i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~----~~~-~~~~~~  146 (209)
T PRK11188         96 --LQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I----PRA-MYLVEL  146 (209)
T ss_pred             --EecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H----HHH-HHHHHH
Confidence              23355542        267899999999999999542 21  11                   0    000 111356


Q ss_pred             HHHHHHhhhccCCeEEEEeccC
Q 016644          218 FLGARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       218 FL~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .|+.-.+-|+|||+|++..+..
T Consensus       147 ~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        147 ALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             HHHHHHHHcCCCCEEEEEEecC
Confidence            7888899999999999966554

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.13  E-value=9.9e-06  Score=74.33  Aligned_cols=106  Identities=20%  Similarity=0.268  Sum_probs=61.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ++-+++|+|||+|+||+-+.+                 -.+.|..-|....-...+.+....           .+. ++ 
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~-----------------~G~~VtAvD~s~~al~~l~~~a~~-----------~~l-~i-   79 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLAS-----------------QGFDVTAVDISPVALEKLQRLAEE-----------EGL-DI-   79 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHH-----------------TT-EEEEEESSHHHHHHHHHHHHH-----------TT--TE-
T ss_pred             CCCcEEEcCCCCcHHHHHHHH-----------------CCCeEEEEECCHHHHHHHHHHHhh-----------cCc-ee-
Confidence            457999999999999999872                 237788888754333333221110           000 11 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ...-.++ +..-+++.+|+|+|..++|.|..  +.                                  +..++....+
T Consensus        80 -~~~~~Dl-~~~~~~~~yD~I~st~v~~fL~~--~~----------------------------------~~~i~~~m~~  121 (192)
T PF03848_consen   80 -RTRVADL-NDFDFPEEYDFIVSTVVFMFLQR--EL----------------------------------RPQIIENMKA  121 (192)
T ss_dssp             -EEEE-BG-CCBS-TTTEEEEEEESSGGGS-G--GG----------------------------------HHHHHHHHHH
T ss_pred             -EEEEecc-hhccccCCcCEEEEEEEeccCCH--HH----------------------------------HHHHHHHHHh
Confidence             1111132 22223578999999999999853  21                                  1233455688


Q ss_pred             hhccCCeEEEEecc
Q 016644          225 EMKRCGSMFLVCLG  238 (385)
Q Consensus       225 EL~pGG~lvl~~~g  238 (385)
                      .++|||.+++..+-
T Consensus       122 ~~~pGG~~li~~~~  135 (192)
T PF03848_consen  122 ATKPGGYNLIVTFM  135 (192)
T ss_dssp             TEEEEEEEEEEEEB
T ss_pred             hcCCcEEEEEEEec
Confidence            99999998886543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.06  E-value=2.2e-05  Score=81.42  Aligned_cols=101  Identities=17%  Similarity=0.172  Sum_probs=64.2

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc-ee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS-YF  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-~f  144 (385)
                      ..+|+|+|||+|.+|..+...        +         .+|+..|+-........+ +..            ...+ -|
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~--------~---------~~v~giD~s~~~l~~a~~-~~~------------~~~~i~~   87 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKK--------A---------GQVIALDFIESVIKKNES-ING------------HYKNVKF   87 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhh--------C---------CEEEEEeCCHHHHHHHHH-Hhc------------cCCceEE
Confidence            358999999999999887621        1         356777764332221111 110            0112 23


Q ss_pred             eccccCcccc-cc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYR-RL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~-rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +.+   ++.. .+ +|++++|+|+|+.++||+++.                                    ++..+|+..
T Consensus        88 ~~~---d~~~~~~~~~~~~fD~I~~~~~l~~l~~~------------------------------------~~~~~l~~~  128 (475)
T PLN02336         88 MCA---DVTSPDLNISDGSVDLIFSNWLLMYLSDK------------------------------------EVENLAERM  128 (475)
T ss_pred             EEe---cccccccCCCCCCEEEEehhhhHHhCCHH------------------------------------HHHHHHHHH
Confidence            332   4332 22 788999999999999998541                                    234566778


Q ss_pred             HhhhccCCeEEEE
Q 016644          223 SKEMKRCGSMFLV  235 (385)
Q Consensus       223 a~EL~pGG~lvl~  235 (385)
                      ++-|+|||+|++.
T Consensus       129 ~r~Lk~gG~l~~~  141 (475)
T PLN02336        129 VKWLKVGGYIFFR  141 (475)
T ss_pred             HHhcCCCeEEEEE
Confidence            8999999999774

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.04  E-value=2e-05  Score=73.14  Aligned_cols=138  Identities=21%  Similarity=0.239  Sum_probs=89.3

Q ss_pred             chhHHhHHH---HHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 016644           28 ASYANNSQA---QAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPE  104 (385)
Q Consensus        28 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~  104 (385)
                      .-|++||.+   |.....+++.+|.          ++.+ ++--|+|+|||||--+-.+-                 .+.
T Consensus        21 ~kYt~nsri~~IQ~em~eRaLELLa----------lp~~-~~~~iLDIGCGsGLSg~vL~-----------------~~G   72 (270)
T KOG1541|consen   21 PKYTQNSRIVLIQAEMAERALELLA----------LPGP-KSGLILDIGCGSGLSGSVLS-----------------DSG   72 (270)
T ss_pred             hhccccceeeeehHHHHHHHHHHhh----------CCCC-CCcEEEEeccCCCcchheec-----------------cCC
Confidence            358888876   5555555555554          2333 67889999999997443321                 145


Q ss_pred             eeEEecCCCCCchHHHHh-cCCCCCCchhHhhhcCcCCceeeccccCcccccc-CCCCcccEEEcccccccccCCchhhh
Q 016644          105 FSAFFSDLPSNDFNTLFQ-LLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESAL  182 (385)
Q Consensus       105 ~qv~~nDLp~NDFn~lF~-~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~  182 (385)
                      .+++--|...-+....-. .+.               ..+ +.   ++.=+-| |+++++|-++|-+|+|||=...+...
T Consensus        73 h~wiGvDiSpsML~~a~~~e~e---------------gdl-il---~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~  133 (270)
T KOG1541|consen   73 HQWIGVDISPSMLEQAVERELE---------------GDL-IL---CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLH  133 (270)
T ss_pred             ceEEeecCCHHHHHHHHHhhhh---------------cCe-ee---eecCCCCCCCCCccceEEEeeeeeeecccCcccc
Confidence            788888876545444321 111               111 11   1222445 89999999999999999866544331


Q ss_pred             cccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccC
Q 016644          183 DKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       183 ~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .                           =++-+..|+..-...|++|++-|+.+.=.
T Consensus       134 ~---------------------------P~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen  134 V---------------------------PKKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             C---------------------------hHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence            1                           13347788888899999999999999544

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.02  E-value=2.1e-05  Score=72.07  Aligned_cols=115  Identities=12%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+|||+|..++.+...        +       |..+++.-|+-.......-+.+..           ....++- 
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~--------~-------p~~~v~gvD~~~~~l~~a~~~~~~-----------~~l~ni~-   69 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQ--------N-------PDKNFLGIEIHTPIVLAANNKANK-----------LGLKNLH-   69 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHh--------C-------CCCCEEEEEeeHHHHHHHHHHHHH-----------hCCCCEE-
Confidence            358999999999998877632        2       677888888854333333222221           0111331 


Q ss_pred             ccccCccc---cccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFY---RRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       146 ~~vpgSFy---~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                       .+-++..   ..++|++++|.+++++..+|..+.. ..          .++                   ....||+.-
T Consensus        70 -~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h-~~----------~r~-------------------~~~~~l~~~  118 (194)
T TIGR00091        70 -VLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRH-NK----------RRI-------------------TQPHFLKEY  118 (194)
T ss_pred             -EEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCc-cc----------ccc-------------------CCHHHHHHH
Confidence             1223433   4457888999999999999954311 00          000                   013566777


Q ss_pred             HhhhccCCeEEEEecc
Q 016644          223 SKEMKRCGSMFLVCLG  238 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g  238 (385)
                      ++-|+|||.+++..-.
T Consensus       119 ~r~LkpgG~l~~~td~  134 (194)
T TIGR00091       119 ANVLKKGGVIHFKTDN  134 (194)
T ss_pred             HHHhCCCCEEEEEeCC
Confidence            8999999999887733

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.01  E-value=0.00025  Score=65.93  Aligned_cols=29  Identities=17%  Similarity=0.371  Sum_probs=24.2

Q ss_pred             cccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          281 IPVYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       281 ~P~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      .+.++.+.+|+...++..| |++...+.+.
T Consensus       188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  216 (230)
T PRK07580        188 TRIYPHREKGIRRALAAAG-FKVVRTERIS  216 (230)
T ss_pred             CCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence            4567789999999999999 9988777654

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.00  E-value=7.6e-05  Score=71.85  Aligned_cols=123  Identities=15%  Similarity=0.260  Sum_probs=67.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCC---CchhHhhhcCcCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIG---SSMEECLASDTHR  141 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~---~~~~~~~~~~~~~  141 (385)
                      ++++|+|+|||||.-+-.+.-.+    .+....  ...+.++|+-.|+-...-...-+...+..   .-+..+.     .
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l----~e~~~~--~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~-----~  167 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLL----AETLPK--AREPDVKILATDIDLKALEKARAGIYPERELEDLPKALL-----A  167 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHH----HHHhhh--cCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHH-----h
Confidence            46999999999997533222111    122211  01235899999996544444333332100   0000000     0


Q ss_pred             ceeecc----------------ccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHH
Q 016644          142 SYFAAG----------------VPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTAN  205 (385)
Q Consensus       142 ~~f~~~----------------vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~  205 (385)
                      .||...                .-++..+.-+|.+++|+|+|.++|||+++ |.                          
T Consensus       168 ~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~--------------------------  220 (264)
T smart00138      168 RYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PT--------------------------  220 (264)
T ss_pred             hhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HH--------------------------
Confidence            122110                11122222246899999999999999854 11                          


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCeEEE
Q 016644          206 AYKKQFQTDLAAFLGARSKEMKRCGSMFL  234 (385)
Q Consensus       206 ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  234 (385)
                               ....|+.-++-|+|||+|++
T Consensus       221 ---------~~~~l~~l~~~L~pGG~L~l  240 (264)
T smart00138      221 ---------QRKLLNRFAEALKPGGYLFL  240 (264)
T ss_pred             ---------HHHHHHHHHHHhCCCeEEEE
Confidence                     22344567899999999975

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.00  E-value=1.1e-05  Score=80.59  Aligned_cols=106  Identities=13%  Similarity=0.194  Sum_probs=68.0

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      -+|+|+|||+|..++.+..        ++       |..+|+..|....-....-+++..           .....-   
T Consensus       198 g~VLDlGCG~G~ls~~la~--------~~-------p~~~v~~vDis~~Al~~A~~nl~~-----------n~l~~~---  248 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLAR--------HS-------PKIRLTLSDVSAAALESSRATLAA-----------NGLEGE---  248 (342)
T ss_pred             CeEEEeccCcCHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHHHHH-----------cCCCCE---
Confidence            4799999999998877652        22       667899999854333332222221           000111   


Q ss_pred             cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644          147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM  226 (385)
Q Consensus       147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL  226 (385)
                      .+.++.+..  .++++|+|+|+-.+||.-..-                                 ..+...|++.-++-|
T Consensus       249 ~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~---------------------------------~~~~~~~i~~a~~~L  293 (342)
T PRK09489        249 VFASNVFSD--IKGRFDMIISNPPFHDGIQTS---------------------------------LDAAQTLIRGAVRHL  293 (342)
T ss_pred             EEEcccccc--cCCCccEEEECCCccCCcccc---------------------------------HHHHHHHHHHHHHhc
Confidence            123344443  367899999999999742211                                 123566788889999


Q ss_pred             ccCCeEEEEe
Q 016644          227 KRCGSMFLVC  236 (385)
Q Consensus       227 ~pGG~lvl~~  236 (385)
                      +|||.|+++.
T Consensus       294 kpgG~L~iVa  303 (342)
T PRK09489        294 NSGGELRIVA  303 (342)
T ss_pred             CcCCEEEEEE
Confidence            9999998865

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.99  E-value=0.00018  Score=69.66  Aligned_cols=152  Identities=18%  Similarity=0.293  Sum_probs=92.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +-++|+|+|||=|..++..+.        ++        ...|+--+|..|.....-+.+...  .+      .....+-
T Consensus        72 ~G~~lLDiGCGWG~l~~~aA~--------~y--------~v~V~GvTlS~~Q~~~~~~r~~~~--gl------~~~v~v~  127 (283)
T COG2230          72 PGMTLLDIGCGWGGLAIYAAE--------EY--------GVTVVGVTLSEEQLAYAEKRIAAR--GL------EDNVEVR  127 (283)
T ss_pred             CCCEEEEeCCChhHHHHHHHH--------Hc--------CCEEEEeeCCHHHHHHHHHHHHHc--CC------CcccEEE
Confidence            348999999999999998873        33        367777788776655543322110  00      0000111


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..    + |..+-..  +|-|.|-=+++-+..                                    +-+..|++.-.+
T Consensus       128 l~----d-~rd~~e~--fDrIvSvgmfEhvg~------------------------------------~~~~~ff~~~~~  164 (283)
T COG2230         128 LQ----D-YRDFEEP--FDRIVSVGMFEHVGK------------------------------------ENYDDFFKKVYA  164 (283)
T ss_pred             ec----c-ccccccc--cceeeehhhHHHhCc------------------------------------ccHHHHHHHHHh
Confidence            11    1 3222111  676666666555433                                    336778888999


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccc-cccCCHHHHHHHHHhcCceEe
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIP-VYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      -|+|||+|++-..+.......     ...          .++          +.+.+| -+.||.+++....++.| |.+
T Consensus       165 ~L~~~G~~llh~I~~~~~~~~-----~~~----------~~i----------~~yiFPgG~lPs~~~i~~~~~~~~-~~v  218 (283)
T COG2230         165 LLKPGGRMLLHSITGPDQEFR-----RFP----------DFI----------DKYIFPGGELPSISEILELASEAG-FVV  218 (283)
T ss_pred             hcCCCceEEEEEecCCCcccc-----cch----------HHH----------HHhCCCCCcCCCHHHHHHHHHhcC-cEE
Confidence            999999999998887532100     000          011          122233 36789999999999998 888


Q ss_pred             cEEEEE
Q 016644          304 NKLEVF  309 (385)
Q Consensus       304 ~~le~~  309 (385)
                      ...+.+
T Consensus       219 ~~~~~~  224 (283)
T COG2230         219 LDVESL  224 (283)
T ss_pred             ehHhhh
Confidence            777765

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.96  E-value=4.4e-05  Score=68.77  Aligned_cols=124  Identities=14%  Similarity=0.104  Sum_probs=70.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+..        ..       +  +|+..|+-......+-+.+..           ... ++  
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~--------~~-------~--~v~~vD~s~~~~~~a~~~~~~-----------~~~-~~--   68 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKG--------KG-------K--CILTTDINPFAVKELRENAKL-----------NNV-GL--   68 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHh--------cC-------C--EEEEEECCHHHHHHHHHHHHH-----------cCC-ce--
Confidence            46799999999998887652        11       3  788889854333332222211           001 11  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+-+++++.  +.+++|+++|+..+|.....+.. .+....++..|                ..-...+..||+.-.+-
T Consensus        69 ~~~~~d~~~~--~~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~  129 (179)
T TIGR00537        69 DVVMTDLFKG--VRGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGG----------------KDGRKVIDRFLDELPEI  129 (179)
T ss_pred             EEEEcccccc--cCCcccEEEECCCCCCCcchhcc-cchhhhhhhcC----------------CchHHHHHHHHHhHHHh
Confidence            1233465553  34599999999988866543221 00000000000                00112356788888899


Q ss_pred             hccCCeEEEEeccC
Q 016644          226 MKRCGSMFLVCLGR  239 (385)
Q Consensus       226 L~pGG~lvl~~~g~  239 (385)
                      |+|||++++...+.
T Consensus       130 Lk~gG~~~~~~~~~  143 (179)
T TIGR00537       130 LKEGGRVQLIQSSL  143 (179)
T ss_pred             hCCCCEEEEEEecc
Confidence            99999998877443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.94  E-value=2.6e-05  Score=69.87  Aligned_cols=109  Identities=19%  Similarity=0.230  Sum_probs=67.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+|||+|..++.+..        ++       |..+|+..|.-.+-....-+++..           ....+  +
T Consensus        32 ~~~vLDlG~G~G~i~~~la~--------~~-------~~~~v~~vDi~~~a~~~a~~n~~~-----------n~~~~--v   83 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAK--------RG-------PDAKVTAVDINPDALELAKRNAER-----------NGLEN--V   83 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHH--------TS-------TCEEEEEEESBHHHHHHHHHHHHH-----------TTCTT--E
T ss_pred             CCeEEEecCChHHHHHHHHH--------hC-------CCCEEEEEcCCHHHHHHHHHHHHh-----------cCccc--c
Confidence            46799999999999988862        22       667899999854333333333321           11122  2


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+..+.++.+- +.++|+++|+-=+|+-.+.-                                 ..-+..|+..-.+-
T Consensus        84 ~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~---------------------------------~~~~~~~i~~a~~~  129 (170)
T PF05175_consen   84 EVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDG---------------------------------LDLLRDFIEQARRY  129 (170)
T ss_dssp             EEEESSTTTTCC-TTCEEEEEE---SBTTSHCH---------------------------------HHHHHHHHHHHHHH
T ss_pred             cccccccccccc-ccceeEEEEccchhcccccc---------------------------------hhhHHHHHHHHHHh
Confidence            234457776654 89999999985544422100                                 11245566777899


Q ss_pred             hccCCeEEEEe
Q 016644          226 MKRCGSMFLVC  236 (385)
Q Consensus       226 L~pGG~lvl~~  236 (385)
                      |+|||.|++..
T Consensus       130 Lk~~G~l~lv~  140 (170)
T PF05175_consen  130 LKPGGRLFLVI  140 (170)
T ss_dssp             EEEEEEEEEEE
T ss_pred             ccCCCEEEEEe
Confidence            99999998765

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.87  E-value=3.2e-05  Score=78.09  Aligned_cols=111  Identities=12%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      -+|+|+|||+|..++.+.        +++       |..+|++.|...--....-+++...        ......++  .
T Consensus       230 ~~VLDLGCGtGvi~i~la--------~~~-------P~~~V~~vD~S~~Av~~A~~N~~~n--------~~~~~~~v--~  284 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLL--------DKN-------PQAKVVFVDESPMAVASSRLNVETN--------MPEALDRC--E  284 (378)
T ss_pred             CeEEEEeccccHHHHHHH--------HhC-------CCCEEEEEECCHHHHHHHHHHHHHc--------CcccCceE--E
Confidence            589999999999887765        222       7789999998532222222222100        00000011  1


Q ss_pred             cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644          147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM  226 (385)
Q Consensus       147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL  226 (385)
                      .+.++.+..+ ++.++|+|+|+--+|+.......+                                 ...+++.-.+-|
T Consensus       285 ~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~i---------------------------------a~~l~~~a~~~L  330 (378)
T PRK15001        285 FMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNV---------------------------------AWEMFHHARRCL  330 (378)
T ss_pred             EEEccccccC-CCCCEEEEEECcCcccCccCCHHH---------------------------------HHHHHHHHHHhc
Confidence            1233445544 567899999999999854322211                                 123556667889


Q ss_pred             ccCCeEEEEe
Q 016644          227 KRCGSMFLVC  236 (385)
Q Consensus       227 ~pGG~lvl~~  236 (385)
                      +|||+|+++.
T Consensus       331 kpGG~L~iV~  340 (378)
T PRK15001        331 KINGELYIVA  340 (378)
T ss_pred             ccCCEEEEEE
Confidence            9999998884

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.85  E-value=1.3e-05  Score=65.16  Aligned_cols=99  Identities=22%  Similarity=0.318  Sum_probs=60.9

Q ss_pred             EeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccc
Q 016644           69 LADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGV  148 (385)
Q Consensus        69 IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~v  148 (385)
                      |+|+|||+|.++..+.... +.           .|+.+++.-|+-.+.....-+....           ...+.-|+.+ 
T Consensus         1 ILDlgcG~G~~~~~l~~~~-~~-----------~~~~~~~gvD~s~~~l~~~~~~~~~-----------~~~~~~~~~~-   56 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRF-DA-----------GPSSRVIGVDISPEMLELAKKRFSE-----------DGPKVRFVQA-   56 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-HHHHHHHHHHSHH-----------TTTTSEEEES-
T ss_pred             CEEeecCCcHHHHHHHHHh-hh-----------cccceEEEEECCHHHHHHHHHhchh-----------cCCceEEEEC-
Confidence            7999999999999887442 11           1458899999866554444333310           0011223333 


Q ss_pred             cCcccccc-CCCCcccEEEcccc-cccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644          149 PGSFYRRL-FPTRSIDFFHSAFS-LHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM  226 (385)
Q Consensus       149 pgSFy~rL-fP~~Svd~~~Ss~a-lHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL  226 (385)
                        ++ ..+ ++.+++|+++++.. +|++++                                    +++..+|+.-++-|
T Consensus        57 --D~-~~l~~~~~~~D~v~~~~~~~~~~~~------------------------------------~~~~~ll~~~~~~l   97 (101)
T PF13649_consen   57 --DA-RDLPFSDGKFDLVVCSGLSLHHLSP------------------------------------EELEALLRRIARLL   97 (101)
T ss_dssp             --CT-TCHHHHSSSEEEEEE-TTGGGGSSH------------------------------------HHHHHHHHHHHHTE
T ss_pred             --CH-hHCcccCCCeeEEEEcCCccCCCCH------------------------------------HHHHHHHHHHHHHh
Confidence              43 334 67889999999655 998654                                    23567778889999


Q ss_pred             ccCC
Q 016644          227 KRCG  230 (385)
Q Consensus       227 ~pGG  230 (385)
                      +|||
T Consensus        98 ~pgG  101 (101)
T PF13649_consen   98 RPGG  101 (101)
T ss_dssp             EEEE
T ss_pred             CCCC
Confidence            9998

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.83  E-value=8.5e-05  Score=72.35  Aligned_cols=147  Identities=18%  Similarity=0.198  Sum_probs=98.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +--+|+|+||+.|.-+.++.        .+       .+ -.|+--| |+-.|..-|+.+..+.       .  ....+|
T Consensus       115 ~gk~VLDIGC~nGY~~frM~--------~~-------GA-~~ViGiD-P~~lf~~QF~~i~~~l-------g--~~~~~~  168 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRML--------GR-------GA-KSVIGID-PSPLFYLQFEAIKHFL-------G--QDPPVF  168 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHh--------hc-------CC-CEEEEEC-CChHHHHHHHHHHHHh-------C--CCccEE
Confidence            34689999999999998886        11       13 4566666 6667777666554321       1  112344


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..  |-. .+.|-..+++|.|||-=.|=-+.+.=..                                      |..-..
T Consensus       169 ~l--plg-vE~Lp~~~~FDtVF~MGVLYHrr~Pl~~--------------------------------------L~~Lk~  207 (315)
T PF08003_consen  169 EL--PLG-VEDLPNLGAFDTVFSMGVLYHRRSPLDH--------------------------------------LKQLKD  207 (315)
T ss_pred             Ec--Ccc-hhhccccCCcCEEEEeeehhccCCHHHH--------------------------------------HHHHHH
Confidence            43  222 5666447899999998776555442222                                      233567


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      -|+|||.||+.++..+....       .                -++.++.+..++--++.||+.-+...++.+| |+
T Consensus       208 ~L~~gGeLvLETlvi~g~~~-------~----------------~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~  261 (315)
T PF08003_consen  208 SLRPGGELVLETLVIDGDEN-------T----------------VLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FK  261 (315)
T ss_pred             hhCCCCEEEEEEeeecCCCc-------e----------------EEccCCcccCCCceEEeCCHHHHHHHHHHcC-Cc
Confidence            89999999999988752210       1                1244556778888899999999999999999 86

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.81  E-value=4.7e-05  Score=63.21  Aligned_cols=38  Identities=16%  Similarity=0.246  Sum_probs=28.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchH
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFN  118 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn  118 (385)
                      ..+|+|+|||+|..+..+.+..               |..+|+..|+-..-..
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~~~~~   57 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLV---------------PNGRVYAIERNPEALR   57 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHC---------------CCceEEEEcCCHHHHH
Confidence            3589999999999988886322               4578899998544333

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PHA03411 putative methyltransferase; Provisional

Probab=97.77  E-value=0.00017  Score=69.69  Aligned_cols=120  Identities=15%  Similarity=0.155  Sum_probs=70.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+|||+|..++.+..        +.       +..+|+..|+-.......-+.++.               .-+ 
T Consensus        65 ~grVLDLGcGsGilsl~la~--------r~-------~~~~V~gVDisp~al~~Ar~n~~~---------------v~~-  113 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLH--------RC-------KPEKIVCVELNPEFARIGKRLLPE---------------AEW-  113 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHhCcC---------------CEE-
Confidence            35899999999988776642        11       346889999854322222222211               112 


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHH--HHHHHHHHHH
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQT--DLAAFLGARS  223 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~--D~~~FL~~Ra  223 (385)
                        +-+++.+ +.+..++|+|+|+-.++++......  +  -..|..|..                ..+  .+..||+..+
T Consensus       114 --v~~D~~e-~~~~~kFDlIIsNPPF~~l~~~d~~--~--~~~~~GG~~----------------g~~~l~~~~~l~~v~  170 (279)
T PHA03411        114 --ITSDVFE-FESNEKFDVVISNPPFGKINTTDTK--D--VFEYTGGEF----------------EFKVMTLGQKFADVG  170 (279)
T ss_pred             --EECchhh-hcccCCCcEEEEcCCccccCchhhh--h--hhhhccCcc----------------ccccccHHHHHhhhH
Confidence              2345543 3356789999999999996432111  1  011111100                001  1567888899


Q ss_pred             hhhccCCeEEEEeccC
Q 016644          224 KEMKRCGSMFLVCLGR  239 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~  239 (385)
                      .-|+|+|.+.+...|+
T Consensus       171 ~~L~p~G~~~~~yss~  186 (279)
T PHA03411        171 YFIVPTGSAGFAYSGR  186 (279)
T ss_pred             heecCCceEEEEEecc
Confidence            9999999888776555

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.74  E-value=0.00017  Score=67.92  Aligned_cols=200  Identities=15%  Similarity=0.148  Sum_probs=108.5

Q ss_pred             hhHHhHHHHHHHH--------HHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCC
Q 016644           29 SYANNSQAQAIHA--------QSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGY  100 (385)
Q Consensus        29 sY~~nS~~Q~~~~--------~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~  100 (385)
                      -|..++.-+....        -.-..+|.+....+..  .+ ...+.+|+++|||.|..++-+++..             
T Consensus        30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~--~~-~~~~~~ilEvGCGvGNtvfPll~~~-------------   93 (264)
T KOG2361|consen   30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLP--VD-EKSAETILEVGCGVGNTVFPLLKTS-------------   93 (264)
T ss_pred             hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhC--cc-ccChhhheeeccCCCcccchhhhcC-------------
Confidence            3555555554443        1134455554444422  11 1123489999999998777776322             


Q ss_pred             CCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchh
Q 016644          101 EPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPES  180 (385)
Q Consensus       101 ~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~  180 (385)
                      +.+.+.||..|-..+--+-+-++-.        |....  ...|++-.-++=...-++.+|+|++..-+.|   |-+|+.
T Consensus        94 ~n~~l~v~acDfsp~Ai~~vk~~~~--------~~e~~--~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pe  160 (264)
T KOG2361|consen   94 PNNRLKVYACDFSPRAIELVKKSSG--------YDESR--VEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPE  160 (264)
T ss_pred             CCCCeEEEEcCCChHHHHHHHhccc--------cchhh--hcccceeccchhccCCCCcCccceEEEEEEE---eccChH
Confidence            3345999998887654443322211        00000  0112222222213444677888887655543   444443


Q ss_pred             hhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHH
Q 016644          181 ALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQD  260 (385)
Q Consensus       181 l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~  260 (385)
                      -                                 +.+=+..-.+-|||||.|++-=.|+.+..             .+. 
T Consensus       161 k---------------------------------~~~a~~nl~~llKPGG~llfrDYg~~Dla-------------qlR-  193 (264)
T KOG2361|consen  161 K---------------------------------MQSVIKNLRTLLKPGGSLLFRDYGRYDLA-------------QLR-  193 (264)
T ss_pred             H---------------------------------HHHHHHHHHHHhCCCcEEEEeecccchHH-------------HHh-
Confidence            2                                 22223556789999999999888875320             000 


Q ss_pred             HHHHHHHcCCccccccc-ccccccccCCHHHHHHHHHhcCceEecEEEEE
Q 016644          261 AWNDLVQEGLITGEKRD-SFNIPVYASSLQEFKEVVEANGSFVINKLEVF  309 (385)
Q Consensus       261 al~~mv~eG~i~~e~~d-~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~  309 (385)
                         -. .+-.|++..+- +==-+.||-+.+|+..++.+.| |...++++-
T Consensus       194 ---F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~  238 (264)
T KOG2361|consen  194 ---FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD  238 (264)
T ss_pred             ---cc-CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence               00 12222211111 1114789999999999999999 877666654

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.71  E-value=7.2e-05  Score=75.60  Aligned_cols=110  Identities=15%  Similarity=0.258  Sum_probs=71.3

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      -.++|+|||+|..++.+..        +.       |+.+++--|+-......+-+....           ....++.+ 
T Consensus       124 p~vLEIGcGsG~~ll~lA~--------~~-------P~~~~iGIEI~~~~i~~a~~ka~~-----------~gL~NV~~-  176 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAK--------NN-------PNKLFIGIEIHTPSIEQVLKQIEL-----------LNLKNLLI-  176 (390)
T ss_pred             CeEEEEcCcccHHHHHHHH--------hC-------CCCCEEEEECCHHHHHHHHHHHHH-----------cCCCcEEE-
Confidence            4789999999998887762        22       778899989854444444333221           11223322 


Q ss_pred             cccCcc--ccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          147 GVPGSF--YRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       147 ~vpgSF--y~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       +.++-  .-..+|++++|.++.++...|..+...             ++                   -...||..-++
T Consensus       177 -i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHR-------------Rl-------------------v~~~fL~e~~R  223 (390)
T PRK14121        177 -INYDARLLLELLPSNSVEKIFVHFPVPWDKKPHR-------------RV-------------------ISEDFLNEALR  223 (390)
T ss_pred             -EECCHHHhhhhCCCCceeEEEEeCCCCccccchh-------------hc-------------------cHHHHHHHHHH
Confidence             22232  224589999999999888888332110             11                   13567788899


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+|||.+.+.+
T Consensus       224 vLkpGG~l~l~T  235 (390)
T PRK14121        224 VLKPGGTLELRT  235 (390)
T ss_pred             HcCCCcEEEEEE
Confidence            999999998766

>PRK14967 putative methyltransferase; Provisional

Probab=97.70  E-value=0.00036  Score=65.23  Aligned_cols=167  Identities=16%  Similarity=0.090  Sum_probs=88.3

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+..        .        ..-+++..|+...-....-+++..           ... ++  
T Consensus        37 ~~~vLDlGcG~G~~~~~la~--------~--------~~~~v~~vD~s~~~l~~a~~n~~~-----------~~~-~~--   86 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAA--------A--------GAGSVTAVDISRRAVRSARLNALL-----------AGV-DV--   86 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHH--------c--------CCCeEEEEECCHHHHHHHHHHHHH-----------hCC-ee--
Confidence            36899999999998877642        1        113678888754322222222110           001 11  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcc-cccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDK-RSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~-~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..+-+++.. .++++++|+|+++--.+..+...  ..+. ....|+.+                .--..++..|++.-.+
T Consensus        87 ~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~~~~l~~a~~  147 (223)
T PRK14967         87 DVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG----------------PDGRAVLDRLCDAAPA  147 (223)
T ss_pred             EEEECchhh-hccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC----------------CcHHHHHHHHHHHHHH
Confidence            123346655 45788999999975433322211  0000 00011100                0012346778888889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcC
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG  299 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~g  299 (385)
                      -|+|||++++......               . +.+.++.+...| +..+.+....+|+ .+..-.....+++.|
T Consensus       148 ~Lk~gG~l~~~~~~~~---------------~-~~~~~~~l~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  204 (223)
T PRK14967        148 LLAPGGSLLLVQSELS---------------G-VERTLTRLSEAG-LDAEVVASQWIPF-GPVLRARAAWLERRG  204 (223)
T ss_pred             hcCCCcEEEEEEeccc---------------C-HHHHHHHHHHCC-CCeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence            9999999987654431               0 334444454445 4455555555664 332333446677787

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.66  E-value=0.00015  Score=67.05  Aligned_cols=83  Identities=10%  Similarity=0.011  Sum_probs=48.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..|..+...+              .+.-+|+--|.-.+.....-+.+...          +-..++  
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~--------------~~~g~V~~iD~~~~~~~~a~~~l~~~----------~~~~~v--  126 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAI--------------ERRGKVYTVEIVKELAIYAAQNIERL----------GYWGVV--  126 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhc--------------CCCCEEEEEeCCHHHHHHHHHHHHHc----------CCCCcE--
Confidence            4789999999999997775322              02246787787543332222222210          001112  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccc
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWL  174 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWL  174 (385)
                      .-+-+++.+-+.+.+++|.+++..+++++
T Consensus       127 ~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~  155 (205)
T PRK13944        127 EVYHGDGKRGLEKHAPFDAIIVTAAASTI  155 (205)
T ss_pred             EEEECCcccCCccCCCccEEEEccCcchh
Confidence            12234554444456799999999998764

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.65  E-value=0.00012  Score=68.91  Aligned_cols=128  Identities=12%  Similarity=0.062  Sum_probs=72.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..++.+....               |..+++..|.-..-....-+.+..           ....++ 
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~---------------~~~~v~~iD~~~~~~~~a~~~~~~-----------~~~~~~-  139 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER---------------PDARVTAVDISPEALAVARKNAAR-----------LGLDNV-  139 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHH-----------cCCCeE-
Confidence            34689999999999888776321               457888888754444433222211           001111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCc---hhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVP---ESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P---~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                       ..+.+++.+ .++++++|+|+|+--.+..+...   ..+..     +          .|...-.-......++..|++.
T Consensus       140 -~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~-----~----------e~~~~~~~~~~~~~~~~~~i~~  202 (251)
T TIGR03534       140 -TFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRF-----H----------EPRLALFGGEDGLDFYRRIIAQ  202 (251)
T ss_pred             -EEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhh-----c----------CCHHHHcCCCcHHHHHHHHHHH
Confidence             123346555 45789999999975544322211   11100     0          0000000011233567788899


Q ss_pred             HHhhhccCCeEEEEe
Q 016644          222 RSKEMKRCGSMFLVC  236 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~  236 (385)
                      -.+.|+|||++++..
T Consensus       203 ~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       203 APRLLKPGGWLLLEI  217 (251)
T ss_pred             HHHhcccCCEEEEEE
Confidence            999999999998864

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.65  E-value=0.00038  Score=64.36  Aligned_cols=159  Identities=14%  Similarity=0.194  Sum_probs=96.0

Q ss_pred             EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644           68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG  147 (385)
Q Consensus        68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~  147 (385)
                      +|+++|||||--+..+...+               |.+++.=+|+..+-+.++-.-+....-       .+-..++.+-+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~l---------------P~l~WqPSD~~~~~~~sI~a~~~~~~~-------~Nv~~P~~lDv   85 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQAL---------------PHLTWQPSDPDDNLRPSIRAWIAEAGL-------PNVRPPLALDV   85 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHC---------------CCCEEcCCCCChHHHhhHHHHHHhcCC-------cccCCCeEeec
Confidence            69999999999888887444               789999999988887776542221000       00011111100


Q ss_pred             -cc-Ccccc-ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          148 -VP-GSFYR-RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       148 -vp-gSFy~-rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       -+ -+.-. --++.+++|.++|.+.+|-.+-   ...                                 ..+++.-++
T Consensus        86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~---~~~---------------------------------~~lf~~a~~  129 (204)
T PF06080_consen   86 SAPPWPWELPAPLSPESFDAIFCINMLHISPW---SAV---------------------------------EGLFAGAAR  129 (204)
T ss_pred             CCCCCccccccccCCCCcceeeehhHHHhcCH---HHH---------------------------------HHHHHHHHH
Confidence             01 01000 1136889999999999998643   211                                 123456689


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||.|++--+=..+...+.+.+      ..+.+.|++-              +--|-.|..++|.++-.+.| ++..
T Consensus       130 ~L~~gG~L~~YGPF~~~G~~ts~SN------~~FD~sLr~r--------------dp~~GiRD~e~v~~lA~~~G-L~l~  188 (204)
T PF06080_consen  130 LLKPGGLLFLYGPFNRDGKFTSESN------AAFDASLRSR--------------DPEWGIRDIEDVEALAAAHG-LELE  188 (204)
T ss_pred             hCCCCCEEEEeCCcccCCEeCCcHH------HHHHHHHhcC--------------CCCcCccCHHHHHHHHHHCC-CccC
Confidence            9999999988765443332222211      2234444321              22366789999999999999 6644


Q ss_pred             E
Q 016644          305 K  305 (385)
Q Consensus       305 ~  305 (385)
                      .
T Consensus       189 ~  189 (204)
T PF06080_consen  189 E  189 (204)
T ss_pred             c
Confidence            3

The function of this family is unknown.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.65  E-value=0.00012  Score=64.95  Aligned_cols=103  Identities=12%  Similarity=0.131  Sum_probs=62.6

Q ss_pred             ccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeE
Q 016644          154 RRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSM  232 (385)
Q Consensus       154 ~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  232 (385)
                      +.| ++++++|++++++++||+.+...                                      +|+.-++-|+|||+|
T Consensus        36 ~~lp~~~~~fD~v~~~~~l~~~~d~~~--------------------------------------~l~ei~rvLkpGG~l   77 (160)
T PLN02232         36 IDLPFDDCEFDAVTMGYGLRNVVDRLR--------------------------------------AMKEMYRVLKPGSRV   77 (160)
T ss_pred             hhCCCCCCCeeEEEecchhhcCCCHHH--------------------------------------HHHHHHHHcCcCeEE
Confidence            344 78899999999999999865333                                      345578999999999


Q ss_pred             EEEeccCCCCCCCCCCCCccchHHHHHHHHH---HHHHcCCcccccccccccc----cccCCHHHHHHHHHhcCceEecE
Q 016644          233 FLVCLGRTSADPTDQGGPGILFGTHFQDAWN---DLVQEGLITGEKRDSFNIP----VYASSLQEFKEVVEANGSFVINK  305 (385)
Q Consensus       233 vl~~~g~~~~~~~~~~~~~~~~~~~l~~al~---~mv~eG~i~~e~~d~f~~P----~y~ps~~Ev~~~le~~gsF~i~~  305 (385)
                      ++.-++..+..          + ......|.   -++.-|.+... .+.+..-    ..+++++|+.+.+++.| |+..+
T Consensus        78 ~i~d~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~  144 (160)
T PLN02232         78 SILDFNKSNQS----------V-TTFMQGWMIDNVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSAC  144 (160)
T ss_pred             EEEECCCCChH----------H-HHHHHHHHccchHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcce
Confidence            98877653210          0 00111111   01111211111 1222211    35899999999999999 87544


Q ss_pred             EE
Q 016644          306 LE  307 (385)
Q Consensus       306 le  307 (385)
                      ..
T Consensus       145 ~~  146 (160)
T PLN02232        145 HY  146 (160)
T ss_pred             EE
Confidence            33

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.63  E-value=0.00015  Score=66.34  Aligned_cols=100  Identities=14%  Similarity=0.107  Sum_probs=60.9

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+....               |..+|+.-|.-......+-+.+..           ....++  
T Consensus        46 g~~VLDiGcGtG~~al~la~~~---------------~~~~V~giD~s~~~l~~A~~~~~~-----------~~l~~i--   97 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIAR---------------PELKVTLVDSLGKKIAFLREVAAE-----------LGLKNV--   97 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHC---------------CCCeEEEEeCcHHHHHHHHHHHHH-----------cCCCCE--
Confidence            5789999999999888876321               457888888754332222221111           001111  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+.++.. .+-+.+++|+++|...    .                                      ++..|++..++-
T Consensus        98 ~~~~~d~~-~~~~~~~fDlV~~~~~----~--------------------------------------~~~~~l~~~~~~  134 (187)
T PRK00107         98 TVVHGRAE-EFGQEEKFDVVTSRAV----A--------------------------------------SLSDLVELCLPL  134 (187)
T ss_pred             EEEeccHh-hCCCCCCccEEEEccc----c--------------------------------------CHHHHHHHHHHh
Confidence            12333432 2333679999998531    0                                      134566778899


Q ss_pred             hccCCeEEEEe
Q 016644          226 MKRCGSMFLVC  236 (385)
Q Consensus       226 L~pGG~lvl~~  236 (385)
                      |+|||++++..
T Consensus       135 LkpGG~lv~~~  145 (187)
T PRK00107        135 LKPGGRFLALK  145 (187)
T ss_pred             cCCCeEEEEEe
Confidence            99999998875

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.62  E-value=0.00052  Score=62.17  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=26.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      +..+|+|+|||+|..++.+...        +       |..+|+.-|.-.
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~--------~-------~~~~v~~vD~s~   65 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQ--------F-------PSLQVTAIERNP   65 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHH--------C-------CCCEEEEEECCH
Confidence            3468999999999999888632        2       557888889844

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.57  E-value=0.00021  Score=67.99  Aligned_cols=76  Identities=25%  Similarity=0.345  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHH
Q 016644          214 DLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKE  293 (385)
Q Consensus       214 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~  293 (385)
                      |...||.+..+-|+|||+|+++..-|.-.  +   ..+..+   +.+....+|-.|.-.         +--|.+++|+..
T Consensus       173 dp~~~l~~l~~~lkP~G~lfittinrt~l--S---~~~~i~---~~E~vl~ivp~Gth~---------~ekfi~p~e~~~  235 (282)
T KOG1270|consen  173 DPQEFLNCLSALLKPNGRLFITTINRTIL--S---FAGTIF---LAEIVLRIVPKGTHT---------WEKFINPEELTS  235 (282)
T ss_pred             CHHHHHHHHHHHhCCCCceEeeehhhhHH--H---hhcccc---HHHHHHHhcCCCCcC---------HHHcCCHHHHHH
Confidence            45567788999999999999999888411  0   111222   333333366677543         445799999999


Q ss_pred             HHHhcCceEecEEE
Q 016644          294 VVEANGSFVINKLE  307 (385)
Q Consensus       294 ~le~~gsF~i~~le  307 (385)
                      +++.++ +.++.+.
T Consensus       236 ~l~~~~-~~v~~v~  248 (282)
T KOG1270|consen  236 ILNANG-AQVNDVV  248 (282)
T ss_pred             HHHhcC-cchhhhh
Confidence            999997 7765544

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.55  E-value=0.00034  Score=68.08  Aligned_cols=130  Identities=11%  Similarity=0.086  Sum_probs=68.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      +.+|+|+|||+|..++.+...        +       |..+|+..|.-..-....-++....          +-..++  
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~--------~-------~~~~v~avDis~~al~~A~~n~~~~----------~~~~~i--  174 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYA--------F-------PEAEVDAVDISPDALAVAEINIERH----------GLEDRV--  174 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHH--------C-------CCCEEEEEECCHHHHHHHHHHHHHc----------CCCCcE--
Confidence            468999999999988887632        2       5578999998543333333322110          000122  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYK-KQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~-~q~~~D~~~FL~~Ra~  224 (385)
                      ..+-+++++.+ |++++|+++|+         |+.+....-....+ .+   ...|. ...+. ..--.....|++.-.+
T Consensus       175 ~~~~~D~~~~~-~~~~fD~Iv~N---------PPy~~~~~~~~l~~-~~---~~ep~-~al~gg~dGl~~~~~il~~a~~  239 (284)
T TIGR03533       175 TLIQSDLFAAL-PGRKYDLIVSN---------PPYVDAEDMADLPA-EY---HHEPE-LALASGEDGLDLVRRILAEAAD  239 (284)
T ss_pred             EEEECchhhcc-CCCCccEEEEC---------CCCCCccchhhCCH-hh---hcCHH-HHhcCCCcHHHHHHHHHHHHHH
Confidence            11234655543 67789999997         33221100000000 00   00010 00000 0112344668888889


Q ss_pred             hhccCCeEEEEec
Q 016644          225 EMKRCGSMFLVCL  237 (385)
Q Consensus       225 EL~pGG~lvl~~~  237 (385)
                      -|+|||++++.+.
T Consensus       240 ~L~~gG~l~~e~g  252 (284)
T TIGR03533       240 HLNENGVLVVEVG  252 (284)
T ss_pred             hcCCCCEEEEEEC
Confidence            9999999998774

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.52  E-value=0.00022  Score=67.91  Aligned_cols=126  Identities=13%  Similarity=0.125  Sum_probs=80.0

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +..-+|+|+|||+|..++++.+        ++       ++.++..-++-.-......+++...  ..+        .++
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~--------r~-------~~a~I~~VEiq~~~a~~A~~nv~ln--~l~--------~ri   97 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQ--------RT-------EKAKIVGVEIQEEAAEMAQRNVALN--PLE--------ERI   97 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhc--------cC-------CCCcEEEEEeCHHHHHHHHHHHHhC--cch--------hce
Confidence            3478999999999999998873        22       3366666666655555555554320  000        011


Q ss_pred             eeccccCcc--ccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSF--YRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       144 f~~~vpgSF--y~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                        ..+-.++  +.+-.+..++|+|+|+         |+...         -...  .+..+.++..+-+..-++..+++.
T Consensus        98 --~v~~~Di~~~~~~~~~~~fD~Ii~N---------PPyf~---------~~~~--~~~~~~~~~Ar~e~~~~le~~i~~  155 (248)
T COG4123          98 --QVIEADIKEFLKALVFASFDLIICN---------PPYFK---------QGSR--LNENPLRAIARHEITLDLEDLIRA  155 (248)
T ss_pred             --eEehhhHHHhhhcccccccCEEEeC---------CCCCC---------Cccc--cCcChhhhhhhhhhcCCHHHHHHH
Confidence              1111233  2344555689999986         55432         2222  122335666677778889999999


Q ss_pred             HHhhhccCCeEEEEe
Q 016644          222 RSKEMKRCGSMFLVC  236 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~  236 (385)
                      -++-|||||++.++.
T Consensus       156 a~~~lk~~G~l~~V~  170 (248)
T COG4123         156 AAKLLKPGGRLAFVH  170 (248)
T ss_pred             HHHHccCCCEEEEEe
Confidence            999999999998876

>PRK04266 fibrillarin; Provisional

Probab=97.52  E-value=0.0011  Score=62.55  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=25.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN  115 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N  115 (385)
                      ..+|+|+|||+|..|+.+...+               +.-.|+.-|+-..
T Consensus        73 g~~VlD~G~G~G~~~~~la~~v---------------~~g~V~avD~~~~  107 (226)
T PRK04266         73 GSKVLYLGAASGTTVSHVSDIV---------------EEGVVYAVEFAPR  107 (226)
T ss_pred             CCEEEEEccCCCHHHHHHHHhc---------------CCCeEEEEECCHH
Confidence            4699999999999988775322               2347888887544

>PTZ00146 fibrillarin; Provisional

Probab=97.51  E-value=0.0016  Score=63.61  Aligned_cols=61  Identities=16%  Similarity=0.225  Sum_probs=38.0

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEe
Q 016644           30 YANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFF  109 (385)
Q Consensus        30 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~  109 (385)
                      |-.=.+.+.+.+++++-=|+    .+.+      .+-.+|+|+|||+|..|..+...+              .++=.||-
T Consensus       107 yR~w~p~rSKlaa~i~~g~~----~l~I------kpG~~VLDLGaG~G~~t~~lAdiV--------------G~~G~VyA  162 (293)
T PTZ00146        107 YRVWNPFRSKLAAAIIGGVA----NIPI------KPGSKVLYLGAASGTTVSHVSDLV--------------GPEGVVYA  162 (293)
T ss_pred             eeeeCCcccHHHHHHHCCcc----eecc------CCCCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEE
Confidence            66666777666555433333    2322      233689999999999888776433              12347888


Q ss_pred             cCCCC
Q 016644          110 SDLPS  114 (385)
Q Consensus       110 nDLp~  114 (385)
                      -|+..
T Consensus       163 VD~s~  167 (293)
T PTZ00146        163 VEFSH  167 (293)
T ss_pred             EECcH
Confidence            77643

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.50  E-value=0.00044  Score=62.77  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=62.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+....        .      +.-+|+..|+-.-.      .++.               --+
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~--------~------~~~~v~~vDis~~~------~~~~---------------i~~   76 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQV--------G------GKGRVIAVDLQPMK------PIEN---------------VDF   76 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHh--------C------CCceEEEEeccccc------cCCC---------------ceE
Confidence            34689999999999877775322        0      23467777773311      0110               011


Q ss_pred             eccccCcccc--------ccCCCCcccEEEcccccc----cccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYR--------RLFPTRSIDFFHSAFSLH----WLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQ  212 (385)
Q Consensus       145 ~~~vpgSFy~--------rLfP~~Svd~~~Ss~alH----WLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~  212 (385)
                      +.+   ++.+        +.+|.+++|+++|..+.|    |.-+.+.                               ..
T Consensus        77 ~~~---d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~-------------------------------~~  122 (188)
T TIGR00438        77 IRG---DFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLR-------------------------------SI  122 (188)
T ss_pred             EEe---eCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHH-------------------------------HH
Confidence            211   3221        236788999999976543    3211111                               12


Q ss_pred             HHHHHHHHHHHhhhccCCeEEEEec
Q 016644          213 TDLAAFLGARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       213 ~D~~~FL~~Ra~EL~pGG~lvl~~~  237 (385)
                      ++...+|+.-.+-|+|||++++..+
T Consensus       123 ~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438       123 DLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEc
Confidence            3466778888999999999998753

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.50  E-value=0.00048  Score=53.64  Aligned_cols=102  Identities=23%  Similarity=0.247  Sum_probs=62.0

Q ss_pred             EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644           68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG  147 (385)
Q Consensus        68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~  147 (385)
                      +|+|+|||.|.++..+..                .+..+++..|+..+-....-+.....          .....-|.  
T Consensus         1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~--   52 (107)
T cd02440           1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAAAL----------LADNVEVL--   52 (107)
T ss_pred             CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHhcc----------cccceEEE--
Confidence            589999999998777752                03468888888654333332111100          00111122  


Q ss_pred             ccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644          148 VPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM  226 (385)
Q Consensus       148 vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL  226 (385)
                       -+++.+.. .+.+++|+++++..+++.+                                     .+...+|+...+-|
T Consensus        53 -~~~~~~~~~~~~~~~d~i~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~l   94 (107)
T cd02440          53 -KGDAEELPPEADESFDVIISDPPLHHLV-------------------------------------EDLARFLEEARRLL   94 (107)
T ss_pred             -EcChhhhccccCCceEEEEEccceeehh-------------------------------------hHHHHHHHHHHHHc
Confidence             22433333 3678899999999999861                                     12344556667778


Q ss_pred             ccCCeEEEE
Q 016644          227 KRCGSMFLV  235 (385)
Q Consensus       227 ~pGG~lvl~  235 (385)
                      +|||+++++
T Consensus        95 ~~~g~~~~~  103 (107)
T cd02440          95 KPGGVLVLT  103 (107)
T ss_pred             CCCCEEEEE
Confidence            999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.49  E-value=0.00051  Score=63.80  Aligned_cols=81  Identities=7%  Similarity=-0.015  Sum_probs=45.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|.+|..+....              .++.+|+-.|.-..-....-+.+...           ...++ 
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~~~~~~A~~~~~~~-----------g~~~v-  130 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIPELAEKAERRLRKL-----------GLDNV-  130 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHC-----------CCCCe-
Confidence            34799999999999998765322              12456787776432222222222110           01121 


Q ss_pred             eccccCccccccCCCCcccEEEcccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLH  172 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alH  172 (385)
                       ..+.++..+-+.+.+++|++++..+.+
T Consensus       131 -~~~~~d~~~~~~~~~~fD~Ii~~~~~~  157 (215)
T TIGR00080       131 -IVIVGDGTQGWEPLAPYDRIYVTAAGP  157 (215)
T ss_pred             -EEEECCcccCCcccCCCCEEEEcCCcc
Confidence             122345544444557899999876643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.48  E-value=0.0004  Score=64.60  Aligned_cols=82  Identities=6%  Similarity=-0.086  Sum_probs=46.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+...+              .+.-+|+--|.-..-....-+.+..           ....++ 
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~--------------~~~~~V~~vE~~~~~~~~a~~~l~~-----------~g~~~v-  129 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIV--------------GKSGKVVTIERIPELAEKAKKTLKK-----------LGYDNV-  129 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhc--------------CCCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCe-
Confidence            35799999999999997765321              1234677667633222222222211           001122 


Q ss_pred             eccccCccccccCCCCcccEEEccccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHW  173 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHW  173 (385)
                       ..+-|+...-..+.+.+|++++..+++.
T Consensus       130 -~~~~gd~~~~~~~~~~fD~I~~~~~~~~  157 (212)
T PRK13942        130 -EVIVGDGTLGYEENAPYDRIYVTAAGPD  157 (212)
T ss_pred             -EEEECCcccCCCcCCCcCEEEECCCccc
Confidence             2233455555567789999999887643

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.48  E-value=0.00038  Score=64.36  Aligned_cols=80  Identities=8%  Similarity=-0.039  Sum_probs=45.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+. ..       .         -+++.-|.-.+....+-+.+...           ...+  
T Consensus        78 ~~~~VLeiG~GsG~~t~~la-~~-------~---------~~v~~vd~~~~~~~~a~~~~~~~-----------~~~~--  127 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLA-HL-------V---------RRVFSVERIKTLQWEAKRRLKQL-----------GLHN--  127 (212)
T ss_pred             CCCEEEEECCCccHHHHHHH-HH-------h---------CEEEEEeCCHHHHHHHHHHHHHC-----------CCCc--
Confidence            45799999999999987543 22       1         14566665433322222222210           0111  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWL  174 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWL  174 (385)
                      +..+.+++.+.+.+.+++|++++..+++++
T Consensus       128 v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~  157 (212)
T PRK00312        128 VSVRHGDGWKGWPAYAPFDRILVTAAAPEI  157 (212)
T ss_pred             eEEEECCcccCCCcCCCcCEEEEccCchhh
Confidence            123444554444445899999998877664

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.47  E-value=0.001  Score=61.12  Aligned_cols=106  Identities=20%  Similarity=0.251  Sum_probs=61.6

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +..-+++|+|||.|.+|..+.        .+|         -++.-.|....=-...-+.+...           ..-.+
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA--------~rC---------d~LlavDis~~Al~~Ar~Rl~~~-----------~~V~~   93 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLA--------PRC---------DRLLAVDISPRALARARERLAGL-----------PHVEW   93 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHG--------GGE---------EEEEEEES-HHHHHHHHHHTTT------------SSEEE
T ss_pred             cccceeEecCCCccHHHHHHH--------Hhh---------CceEEEeCCHHHHHHHHHhcCCC-----------CCeEE
Confidence            356789999999999999886        333         34555555332222222223211           00011


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      -...+|.     ..|++++|+++-|-.+++|+..+                                   |+..++..-.
T Consensus        94 ~~~dvp~-----~~P~~~FDLIV~SEVlYYL~~~~-----------------------------------~L~~~l~~l~  133 (201)
T PF05401_consen   94 IQADVPE-----FWPEGRFDLIVLSEVLYYLDDAE-----------------------------------DLRAALDRLV  133 (201)
T ss_dssp             EES-TTT--------SS-EEEEEEES-GGGSSSHH-----------------------------------HHHHHHHHHH
T ss_pred             EECcCCC-----CCCCCCeeEEEEehHhHcCCCHH-----------------------------------HHHHHHHHHH
Confidence            2222333     35999999999999999997622                                   4566667788


Q ss_pred             hhhccCCeEEEEec
Q 016644          224 KEMKRCGSMFLVCL  237 (385)
Q Consensus       224 ~EL~pGG~lvl~~~  237 (385)
                      .-|.|||.||+.-.
T Consensus       134 ~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  134 AALAPGGHLVFGHA  147 (201)
T ss_dssp             HTEEEEEEEEEEEE
T ss_pred             HHhCCCCEEEEEEe
Confidence            99999999998664

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.46  E-value=0.0012  Score=62.19  Aligned_cols=102  Identities=22%  Similarity=0.345  Sum_probs=70.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +.-+|+|+|+|+|..+..++        +++       |.++++.-|||..        +...       .+   ..+  
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------~~~~-------~~---~~r--  144 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALA--------RAY-------PNLRATVFDLPEV--------IEQA-------KE---ADR--  144 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHH--------HHS-------TTSEEEEEE-HHH--------HCCH-------HH---TTT--
T ss_pred             CccEEEeccCcchHHHHHHH--------HHC-------CCCcceeeccHhh--------hhcc-------cc---ccc--
Confidence            44689999999999888776        444       7899999999852        1100       00   112  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +.-+||+|+ .=+|.  .|+++-+..||=.++                                    +|-..+|+.-++
T Consensus       145 v~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d------------------------------------~~~~~iL~~~~~  185 (241)
T PF00891_consen  145 VEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD------------------------------------EDCVKILRNAAA  185 (241)
T ss_dssp             EEEEES-TT-TCCSS--ESEEEEESSGGGS-H------------------------------------HHHHHHHHHHHH
T ss_pred             cccccccHH-hhhcc--ccceeeehhhhhcch------------------------------------HHHHHHHHHHHH
Confidence            235889999 55677  999999999984332                                    133467788899


Q ss_pred             hhccC--CeEEEEeccCC
Q 016644          225 EMKRC--GSMFLVCLGRT  240 (385)
Q Consensus       225 EL~pG--G~lvl~~~g~~  240 (385)
                      .|+||  |++++.=.-.+
T Consensus       186 al~pg~~g~llI~e~~~~  203 (241)
T PF00891_consen  186 ALKPGKDGRLLIIEMVLP  203 (241)
T ss_dssp             HSEECTTEEEEEEEEEEC
T ss_pred             HhCCCCCCeEEEEeeccC
Confidence            99999  99988766554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.46  E-value=0.0033  Score=58.70  Aligned_cols=152  Identities=11%  Similarity=0.102  Sum_probs=87.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCch-hHhhhcCcCCce-
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSM-EECLASDTHRSY-  143 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~-~~~~~~~~~~~~-  143 (385)
                      .-+|+|+|||.|+|++.+.+                 .-.+|+--|+...-...+++...-..... ....+......+ 
T Consensus        35 ~~rvLd~GCG~G~da~~LA~-----------------~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~   97 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAE-----------------QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE   97 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHh-----------------CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence            36999999999999998862                 23788888887655554443211000000 000000001111 


Q ss_pred             eeccccCccccccC-CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLF-PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rLf-P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      |..   ++|++--. +...+|.++-..++|   .+|+..                                 ...+++.-
T Consensus        98 ~~~---~D~~~~~~~~~~~fD~i~D~~~~~---~l~~~~---------------------------------R~~~~~~l  138 (213)
T TIGR03840        98 IFC---GDFFALTAADLGPVDAVYDRAALI---ALPEEM---------------------------------RQRYAAHL  138 (213)
T ss_pred             EEE---ccCCCCCcccCCCcCEEEechhhc---cCCHHH---------------------------------HHHHHHHH
Confidence            222   24443211 135689999888887   344432                                 34456678


Q ss_pred             HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      .+-|+|||++++..+.....             .                      ..-|-|.-+++|+++.+..  .|+
T Consensus       139 ~~lLkpgG~~ll~~~~~~~~-------------~----------------------~~gpp~~~~~~eL~~~f~~--~~~  181 (213)
T TIGR03840       139 LALLPPGARQLLITLDYDQS-------------E----------------------MAGPPFSVSPAEVEALYGG--HYE  181 (213)
T ss_pred             HHHcCCCCeEEEEEEEcCCC-------------C----------------------CCCcCCCCCHHHHHHHhcC--Cce
Confidence            99999999977777655310             0                      0014467888999888852  388


Q ss_pred             ecEEEEEe
Q 016644          303 INKLEVFK  310 (385)
Q Consensus       303 i~~le~~~  310 (385)
                      |+.++..+
T Consensus       182 i~~~~~~~  189 (213)
T TIGR03840       182 IELLESRD  189 (213)
T ss_pred             EEEEeecc
Confidence            77777544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.42  E-value=0.0015  Score=64.67  Aligned_cols=83  Identities=12%  Similarity=0.041  Sum_probs=47.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|.+++.+..        .         ..+|+.-|+..+.....-+......  . .  .......-|
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~--------~---------g~~V~gvD~S~~ml~~A~~~~~~~~--~-~--~~~~~~~~f  201 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLAL--------E---------GAIVSASDISAAMVAEAERRAKEAL--A-A--LPPEVLPKF  201 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHhcc--c-c--cccccceEE
Confidence            347999999999999887762        1         2478888887665544333222100  0 0  000011112


Q ss_pred             eccccCccccccCCCCcccEEEccccccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS  175 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS  175 (385)
                      ..+   +. +.  .++++|+|+|+.++|++.
T Consensus       202 ~~~---Dl-~~--l~~~fD~Vv~~~vL~H~p  226 (315)
T PLN02585        202 EAN---DL-ES--LSGKYDTVTCLDVLIHYP  226 (315)
T ss_pred             EEc---ch-hh--cCCCcCEEEEcCEEEecC
Confidence            222   21 22  268999999999987643

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.39  E-value=0.0044  Score=58.01  Aligned_cols=151  Identities=17%  Similarity=0.182  Sum_probs=84.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhc--CCCCCCchhHhhhcCcCCce
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQL--LPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~--l~~~~~~~~~~~~~~~~~~~  143 (385)
                      .-+|+|.|||.|.|++.+.+                 ...+|+--|+...=...+++.  +......... .+......+
T Consensus        38 ~~rvL~~gCG~G~da~~LA~-----------------~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~-~~~~~~~~v   99 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAE-----------------QGHEVLGVELSELAVEQFFAENGLTPQTRQSGE-FEHYQAGEI   99 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHh-----------------CCCeEEEEccCHHHHHHHHHHcCCCcccccccc-ccccccCce
Confidence            46999999999999998862                 236788888865444443331  1100000000 000000111


Q ss_pred             -eeccccCccccccC-CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 -FAAGVPGSFYRRLF-PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       144 -f~~~vpgSFy~rLf-P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                       +..   ++|++--. ....+|+++-..++|=|   |+..                                 ...+++.
T Consensus       100 ~~~~---~D~~~l~~~~~~~fd~v~D~~~~~~l---~~~~---------------------------------R~~~~~~  140 (218)
T PRK13255        100 TIYC---GDFFALTAADLADVDAVYDRAALIAL---PEEM---------------------------------RERYVQQ  140 (218)
T ss_pred             EEEE---CcccCCCcccCCCeeEEEehHhHhhC---CHHH---------------------------------HHHHHHH
Confidence             111   24443211 12478888888888843   4332                                 3345566


Q ss_pred             HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      -++-|+|||++++..+.....             . .         .            -|-|.-+++|+++.+.  +.|
T Consensus       141 l~~lL~pgG~~~l~~~~~~~~-------------~-~---------~------------gPp~~~~~~el~~~~~--~~~  183 (218)
T PRK13255        141 LAALLPAGCRGLLVTLDYPQE-------------E-L---------A------------GPPFSVSDEEVEALYA--GCF  183 (218)
T ss_pred             HHHHcCCCCeEEEEEEEeCCc-------------c-C---------C------------CCCCCCCHHHHHHHhc--CCc
Confidence            889999999866655443210             0 0         1            2556789999999885  238


Q ss_pred             EecEEEEEe
Q 016644          302 VINKLEVFK  310 (385)
Q Consensus       302 ~i~~le~~~  310 (385)
                      +|+.++..+
T Consensus       184 ~i~~~~~~~  192 (218)
T PRK13255        184 EIELLERQD  192 (218)
T ss_pred             eEEEeeecc
Confidence            888777654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.36  E-value=0.00072  Score=65.68  Aligned_cols=127  Identities=13%  Similarity=0.098  Sum_probs=67.0

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      .+|+|+|||+|..++.+....               |..+|+..|+-..-....-++....          .-..++  .
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~---------------~~~~v~avDis~~al~~a~~n~~~~----------~~~~~v--~  168 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEF---------------PNAEVIAVDISPDALAVAEENAEKN----------QLEHRV--E  168 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHHc----------CCCCcE--E
Confidence            689999999999888776322               4578899998443332222222110          000111  1


Q ss_pred             cccCccccccCCCCcccEEEcccccccccCC---chhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQV---PESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~---P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      .+.+++++. ++.+++|+++|+--..--+..   |..+......++-.|                .-.-.+...|+..-.
T Consensus       169 ~~~~d~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg----------------~dgl~~~~~ii~~a~  231 (284)
T TIGR00536       169 FIQSNLFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGG----------------DDGLNILRQIIELAP  231 (284)
T ss_pred             EEECchhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCC----------------CcHHHHHHHHHHHHH
Confidence            233466654 355689999996322111110   111000000000000                011235667778888


Q ss_pred             hhhccCCeEEEEec
Q 016644          224 KEMKRCGSMFLVCL  237 (385)
Q Consensus       224 ~EL~pGG~lvl~~~  237 (385)
                      +-|+|||+|++.+.
T Consensus       232 ~~L~~gG~l~~e~g  245 (284)
T TIGR00536       232 DYLKPNGFLVCEIG  245 (284)
T ss_pred             HhccCCCEEEEEEC
Confidence            99999999988874

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.35  E-value=0.00084  Score=66.10  Aligned_cols=74  Identities=14%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      .+|+|+|||+|..++.+...        +       |..+|+..|+-..-....-+++...          +-..++  .
T Consensus       135 ~~VLDlG~GsG~iai~la~~--------~-------p~~~V~avDis~~al~~A~~n~~~~----------~l~~~i--~  187 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYA--------F-------PDAEVDAVDISPDALAVAEINIERH----------GLEDRV--T  187 (307)
T ss_pred             CEEEEEechhhHHHHHHHHH--------C-------CCCEEEEEeCCHHHHHHHHHHHHHh----------CCCCcE--E
Confidence            68999999999988877532        2       5678999998543333332322110          000112  1


Q ss_pred             cccCccccccCCCCcccEEEcc
Q 016644          147 GVPGSFYRRLFPTRSIDFFHSA  168 (385)
Q Consensus       147 ~vpgSFy~rLfP~~Svd~~~Ss  168 (385)
                      .+-+++.+.+ |++++|+++|+
T Consensus       188 ~~~~D~~~~l-~~~~fDlIvsN  208 (307)
T PRK11805        188 LIESDLFAAL-PGRRYDLIVSN  208 (307)
T ss_pred             EEECchhhhC-CCCCccEEEEC
Confidence            2334655543 66789999997

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.32  E-value=0.00031  Score=72.42  Aligned_cols=50  Identities=20%  Similarity=0.297  Sum_probs=37.7

Q ss_pred             cccc-CCCCcccEEEcccccc-cccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 016644          153 YRRL-FPTRSIDFFHSAFSLH-WLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCG  230 (385)
Q Consensus       153 y~rL-fP~~Svd~~~Ss~alH-WLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  230 (385)
                      -.|| ||++++|++||+-|+- |.+.---.+.                                      ---+-|+|||
T Consensus       172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~--------------------------------------evdRvLRpGG  213 (506)
T PF03141_consen  172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLF--------------------------------------EVDRVLRPGG  213 (506)
T ss_pred             cccccCCccchhhhhcccccccchhcccceee--------------------------------------hhhhhhccCc
Confidence            3788 9999999999999875 8665422222                                      2468899999


Q ss_pred             eEEEEeccCC
Q 016644          231 SMFLVCLGRT  240 (385)
Q Consensus       231 ~lvl~~~g~~  240 (385)
                      .++++..-..
T Consensus       214 yfv~S~ppv~  223 (506)
T PF03141_consen  214 YFVLSGPPVY  223 (506)
T ss_pred             eEEecCCccc
Confidence            9999886543

; GO: 0008168 methyltransferase activity

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.30  E-value=0.0022  Score=58.76  Aligned_cols=148  Identities=15%  Similarity=0.260  Sum_probs=92.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      -.+|+|+|||.|.+-..+.        +.        ..++.+--++   |-..+.+.+..             .    +
T Consensus        14 gsrVLDLGCGdG~LL~~L~--------~~--------k~v~g~GvEi---d~~~v~~cv~r-------------G----v   57 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLK--------DE--------KQVDGYGVEI---DPDNVAACVAR-------------G----V   57 (193)
T ss_pred             CCEEEecCCCchHHHHHHH--------Hh--------cCCeEEEEec---CHHHHHHHHHc-------------C----C
Confidence            4899999999998433332        21        1344454443   33333332221             0    1


Q ss_pred             ccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       146 ~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..+-++--+-|  ||++|+|.|+-|-+||=+.+ |..+.                                        .
T Consensus        58 ~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~-P~~vL----------------------------------------~   96 (193)
T PF07021_consen   58 SVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR-PDEVL----------------------------------------E   96 (193)
T ss_pred             CEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-HHHHH----------------------------------------H
Confidence            13444544555  89999999999999999866 55542                                        2


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccc------ccCCHHHHHHHHHh
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPV------YASSLQEFKEVVEA  297 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~------y~ps~~Ev~~~le~  297 (385)
                      +-|+-|.+.+++|+.-+             +|    ..-..+.-.|..+..+  .+..+|      ++-|..++.+..++
T Consensus        97 EmlRVgr~~IVsFPNFg-------------~W----~~R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~  157 (193)
T PF07021_consen   97 EMLRVGRRAIVSFPNFG-------------HW----RNRLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRE  157 (193)
T ss_pred             HHHHhcCeEEEEecChH-------------HH----HHHHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHH
Confidence            44677889998885431             22    2223344566665443  233333      46799999999999


Q ss_pred             cCceEecEEEEEe
Q 016644          298 NGSFVINKLEVFK  310 (385)
Q Consensus       298 ~gsF~i~~le~~~  310 (385)
                      .| ++|.+-..+.
T Consensus       158 ~~-i~I~~~~~~~  169 (193)
T PF07021_consen  158 LG-IRIEERVFLD  169 (193)
T ss_pred             CC-CEEEEEEEEc
Confidence            99 8888877775

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.21  E-value=0.0013  Score=69.07  Aligned_cols=130  Identities=12%  Similarity=0.173  Sum_probs=69.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+....               |..+|+.-|+...-....-++....          +-...+  
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~---------------p~~~v~avDis~~al~~A~~N~~~~----------~l~~~v--  191 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL---------------PNANVIATDISLDAIEVAKSNAIKY----------EVTDRI--  191 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC---------------CCCeEEEEECCHHHHHHHHHHHHHc----------CCccce--
Confidence            4689999999999998776322               5678999998532222222221100          000111  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYK-KQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~-~q~~~D~~~FL~~Ra~  224 (385)
                      ..+-+++++. ++.+++|+++|+--....+..+....+.  ..+          .| ..+.+. ..--..+..++..-.+
T Consensus       192 ~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v--~~~----------EP-~~AL~gg~dGl~~~~~il~~a~~  257 (506)
T PRK01544        192 QIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIET--INY----------EP-SIALFAEEDGLQAYFIIAENAKQ  257 (506)
T ss_pred             eeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchh--hcc----------Cc-HHHhcCCccHHHHHHHHHHHHHH
Confidence            1234566554 3667899999975443333322110000  000          00 000010 0112335667777888


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+|||++++..
T Consensus       258 ~L~~gG~l~lEi  269 (506)
T PRK01544        258 FLKPNGKIILEI  269 (506)
T ss_pred             hccCCCEEEEEE
Confidence            999999999875

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.18  E-value=0.002  Score=61.64  Aligned_cols=127  Identities=14%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+....               |..+++..|.-..-...+-+.+..           ....++ 
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~---------------~~~~v~~iDis~~~l~~a~~n~~~-----------~~~~~i-  160 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKER---------------PDAEVTAVDISPEALAVARRNAKH-----------GLGARV-  160 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHh-----------CCCCcE-
Confidence            45789999999999888776322               457889999854433333332210           001111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccc---cccCCchhhhc-ccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLH---WLSQVPESALD-KRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alH---WLS~~P~~l~~-~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                       ..+-++++.. ++++++|+++|+--..   -+...++.+.+ ....++..|                ...-+++..|+.
T Consensus       161 -~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g----------------~~g~~~~~~~~~  222 (275)
T PRK09328        161 -EFLQGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG----------------EDGLDFYRRIIE  222 (275)
T ss_pred             -EEEEccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC----------------CCHHHHHHHHHH
Confidence             1122354433 3468999999862210   00001111100 000000000                112345677888


Q ss_pred             HHHhhhccCCeEEEEe
Q 016644          221 ARSKEMKRCGSMFLVC  236 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~  236 (385)
                      .-.+-|+|||++++..
T Consensus       223 ~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        223 QAPRYLKPGGWLLLEI  238 (275)
T ss_pred             HHHHhcccCCEEEEEE
Confidence            8889999999999865

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.07  E-value=0.0028  Score=65.19  Aligned_cols=124  Identities=11%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|.-|+.+.+..               +...|+..|+-......+-+.+...           .....++
T Consensus       245 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s~~~l~~~~~n~~~~-----------g~~~~~~  298 (427)
T PRK10901        245 GERVLDACAAPGGKTAHILELA---------------PQAQVVALDIDAQRLERVRENLQRL-----------GLKATVI  298 (427)
T ss_pred             CCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCeEEE
Confidence            4689999999999998776332               2257888888554444443333211           0111122


Q ss_pred             ccccCccc--cccCCCCcccEEEccc---ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFY--RRLFPTRSIDFFHSAF---SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       146 ~~vpgSFy--~rLfP~~Svd~~~Ss~---alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      .   ++..  ...++.+++|.|++..   ...-+.+.|....       .        .+++-.    ..+.+....+|.
T Consensus       299 ~---~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~-------~--------~~~~~l----~~l~~~q~~iL~  356 (427)
T PRK10901        299 V---GDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKW-------L--------RRPEDI----AALAALQSEILD  356 (427)
T ss_pred             E---cCcccchhhcccCCCCEEEECCCCCcccccccCccccc-------c--------CCHHHH----HHHHHHHHHHHH
Confidence            2   2322  2234578899998422   1212223333210       0        012111    233345567888


Q ss_pred             HHHhhhccCCeEEEEec
Q 016644          221 ARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~  237 (385)
                      .-++-|+|||+|+.++.
T Consensus       357 ~a~~~LkpGG~lvystc  373 (427)
T PRK10901        357 ALWPLLKPGGTLLYATC  373 (427)
T ss_pred             HHHHhcCCCCEEEEEeC
Confidence            88899999999998774

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.94  E-value=0.0034  Score=64.12  Aligned_cols=73  Identities=18%  Similarity=0.127  Sum_probs=44.6

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      .+|+|+|||+|..++.+...        .       |..+++..|+-.......-++...           ... ++  .
T Consensus       253 ~rVLDLGcGSG~IaiaLA~~--------~-------p~a~VtAVDiS~~ALe~AreNa~~-----------~g~-rV--~  303 (423)
T PRK14966        253 GRVWDLGTGSGAVAVTVALE--------R-------PDAFVRASDISPPALETARKNAAD-----------LGA-RV--E  303 (423)
T ss_pred             CEEEEEeChhhHHHHHHHHh--------C-------CCCEEEEEECCHHHHHHHHHHHHH-----------cCC-cE--E
Confidence            48999999999999877522        1       567888889854333333222211           011 12  1


Q ss_pred             cccCccccccCC-CCcccEEEcc
Q 016644          147 GVPGSFYRRLFP-TRSIDFFHSA  168 (385)
Q Consensus       147 ~vpgSFy~rLfP-~~Svd~~~Ss  168 (385)
                      .+-+++.+..+| .+++|+++|+
T Consensus       304 fi~gDl~e~~l~~~~~FDLIVSN  326 (423)
T PRK14966        304 FAHGSWFDTDMPSEGKWDIIVSN  326 (423)
T ss_pred             EEEcchhccccccCCCccEEEEC
Confidence            233576655444 4689999996

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.94  E-value=0.0014  Score=63.81  Aligned_cols=103  Identities=11%  Similarity=-0.007  Sum_probs=57.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+.        +.        ..-+|+.-|+-.......-+++...          .-...+..
T Consensus       160 g~~VLDvGcGsG~lai~aa--------~~--------g~~~V~avDid~~al~~a~~n~~~n----------~~~~~~~~  213 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAAL--------KL--------GAAKVVGIDIDPLAVESARKNAELN----------QVSDRLQV  213 (288)
T ss_pred             CCEEEEeCCChhHHHHHHH--------Hc--------CCCeEEEEECCHHHHHHHHHHHHHc----------CCCcceEE
Confidence            3789999999998876543        11        1247888887544333322222110          00011111


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      .  -++  ..-++++++|+++++...+++                                         ..++..-.+-
T Consensus       214 ~--~~~--~~~~~~~~fDlVvan~~~~~l-----------------------------------------~~ll~~~~~~  248 (288)
T TIGR00406       214 K--LIY--LEQPIEGKADVIVANILAEVI-----------------------------------------KELYPQFSRL  248 (288)
T ss_pred             E--ecc--cccccCCCceEEEEecCHHHH-----------------------------------------HHHHHHHHHH
Confidence            0  011  112456799999997643322                                         2234445788


Q ss_pred             hccCCeEEEEeccC
Q 016644          226 MKRCGSMFLVCLGR  239 (385)
Q Consensus       226 L~pGG~lvl~~~g~  239 (385)
                      |+|||+|+++....
T Consensus       249 LkpgG~li~sgi~~  262 (288)
T TIGR00406       249 VKPGGWLILSGILE  262 (288)
T ss_pred             cCCCcEEEEEeCcH
Confidence            99999999887654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.93  E-value=0.0023  Score=52.81  Aligned_cols=111  Identities=17%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHH-H-HhcCCCCCCchhHhhhcCcCCcee
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNT-L-FQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~-l-F~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      .+|+|+|||+|..++.+...        .        ..+++..|+  |.+.. + ...++..        .. ..+.-+
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~--------~--------~~~~~gvdi--~~~~~~~a~~~~~~~--------~~-~~~~~~   54 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRR--------G--------AARVTGVDI--DPEAVELARRNLPRN--------GL-DDRVEV   54 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHH--------C--------TCEEEEEES--SHHHHHHHHHHCHHC--------TT-TTTEEE
T ss_pred             CEEEEcCcchHHHHHHHHHH--------C--------CCeEEEEEE--CHHHHHHHHHHHHHc--------cC-CceEEE
Confidence            58999999999977777632        1        368888888  44332 2 2223210        00 011112


Q ss_pred             eccccCccccc--cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRR--LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~r--LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +.+   ++..-  .++++++|+++++-=.+.....+...                              .++...|++.-
T Consensus        55 ~~~---D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~------------------------------~~~~~~~~~~~  101 (117)
T PF13659_consen   55 IVG---DARDLPEPLPDGKFDLIVTNPPYGPRSGDKAAL------------------------------RRLYSRFLEAA  101 (117)
T ss_dssp             EES---HHHHHHHTCTTT-EEEEEE--STTSBTT----G------------------------------GCHHHHHHHHH
T ss_pred             EEC---chhhchhhccCceeEEEEECCCCccccccchhh------------------------------HHHHHHHHHHH
Confidence            222   44333  37899999999975543322111111                              11567888999


Q ss_pred             HhhhccCCeEEEEec
Q 016644          223 SKEMKRCGSMFLVCL  237 (385)
Q Consensus       223 a~EL~pGG~lvl~~~  237 (385)
                      .+-|+|||++++.+.
T Consensus       102 ~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen  102 ARLLKPGGVLVFITP  116 (117)
T ss_dssp             HHHEEEEEEEEEEEE
T ss_pred             HHHcCCCeEEEEEeC
Confidence            999999999998764

...

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.86  E-value=0.018  Score=57.15  Aligned_cols=195  Identities=18%  Similarity=0.216  Sum_probs=111.5

Q ss_pred             hhc-ccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHH
Q 016644           18 ILS-MKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYE   96 (385)
Q Consensus        18 ~~~-m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~   96 (385)
                      +.+ |.||-+..+|.-+-.+|+.. .....++.+.+...+.. |   ...-..+|.|-|.|..+-.+++        .+ 
T Consensus       134 ~~G~~l~~~~~~~~~~~~~~~~sm-~~l~~~~~~~il~~~~G-f---~~v~~avDvGgGiG~v~k~ll~--------~f-  199 (342)
T KOG3178|consen  134 AHGMMLGGYGGADERFSKDFNGSM-SFLSTLVMKKILEVYTG-F---KGVNVAVDVGGGIGRVLKNLLS--------KY-  199 (342)
T ss_pred             ccchhhhhhcccccccHHHHHHHH-HHHHHHHHHhhhhhhcc-c---ccCceEEEcCCcHhHHHHHHHH--------hC-
Confidence            556 56665555554444444433 33333333333222221 2   2356789999999998888774        23 


Q ss_pred             hcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccC
Q 016644           97 ASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQ  176 (385)
Q Consensus        97 ~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~  176 (385)
                            |.+..+==|||.     +-+.-+..        .    +.  +-=|.|.+++. .|.+-  ++|--+.||=+.+
T Consensus       200 ------p~ik~infdlp~-----v~~~a~~~--------~----~g--V~~v~gdmfq~-~P~~d--aI~mkWiLhdwtD  251 (342)
T KOG3178|consen  200 ------PHIKGINFDLPF-----VLAAAPYL--------A----PG--VEHVAGDMFQD-TPKGD--AIWMKWILHDWTD  251 (342)
T ss_pred             ------CCCceeecCHHH-----HHhhhhhh--------c----CC--cceeccccccc-CCCcC--eEEEEeecccCCh
Confidence                  667777556653     22211110        0    00  33467788988 88887  8887777773322


Q ss_pred             CchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHH
Q 016644          177 VPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGT  256 (385)
Q Consensus       177 ~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~  256 (385)
                                                          +|+..||+++++-|+|||.+++.=.--+...+..+......+  
T Consensus       252 ------------------------------------edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~--  293 (342)
T KOG3178|consen  252 ------------------------------------EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTR--  293 (342)
T ss_pred             ------------------------------------HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceee--
Confidence                                                478899999999999999998765432221111110001111  


Q ss_pred             HHHHHHHHHHHc-CCcccccccccccccccCCHHHHHHHHHhcCceEecEEEE
Q 016644          257 HFQDAWNDLVQE-GLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEV  308 (385)
Q Consensus       257 ~l~~al~~mv~e-G~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~  308 (385)
                       -.+.++-...+ |+              -++..|++..+.++| |.+-..-.
T Consensus       294 -~~d~lm~~~~~~Gk--------------ert~~e~q~l~~~~g-F~~~~~~~  330 (342)
T KOG3178|consen  294 -DMDLLMLTQTSGGK--------------ERTLKEFQALLPEEG-FPVCMVAL  330 (342)
T ss_pred             -hhHHHHHHHhccce--------------eccHHHHHhcchhhc-CceeEEEe
Confidence             12222322233 32              378999999999999 87655443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.81  E-value=0.0067  Score=62.35  Aligned_cols=128  Identities=12%  Similarity=0.091  Sum_probs=74.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|.-|+.+...+               +.-+|+..|.-.+-...+-+++...           ... +-+
T Consensus       239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n~~r~-----------g~~-~~v  291 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYENLKRL-----------GLT-IKA  291 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHHHHHc-----------CCC-eEE
Confidence            4689999999999999876322               2357899998665555554444321           011 111


Q ss_pred             ccccCcccc--ccCCCCcccEEEc---ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYR--RLFPTRSIDFFHS---AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       146 ~~vpgSFy~--rLfP~~Svd~~~S---s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      ..+.++-.+  ...+.+++|.|++   .+++.-+.+.|.....               .+++..    .+..+.-..+|.
T Consensus       292 ~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~---------------~~~~~~----~~l~~lQ~~lL~  352 (426)
T TIGR00563       292 ETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWL---------------RKPRDI----AELAELQSEILD  352 (426)
T ss_pred             EEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhc---------------CCHHHH----HHHHHHHHHHHH
Confidence            112223221  1236788999986   2444445555554210               122211    223334467788


Q ss_pred             HHHhhhccCCeEEEEeccC
Q 016644          221 ARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .-++-|+|||+||.++..-
T Consensus       353 ~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       353 AIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             HHHHhcCCCcEEEEEeCCC
Confidence            8889999999999887554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.81  E-value=0.0034  Score=58.23  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=27.2

Q ss_pred             CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEE
Q 016644          157 FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLV  235 (385)
Q Consensus       157 fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~  235 (385)
                      ++++|+|+++..-||.=                                       .||..||.--.+-|||||.|.+.
T Consensus       118 L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L~IA  157 (219)
T PF05148_consen  118 LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGILKIA  157 (219)
T ss_dssp             --TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEEEEE
Confidence            68999999988877642                                       15777888889999999999664

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.78  E-value=0.0029  Score=60.20  Aligned_cols=19  Identities=21%  Similarity=0.352  Sum_probs=15.1

Q ss_pred             CceEEeeeCCCCCcchHHH
Q 016644           65 IPFALADLGCSCGNNTLYI   83 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~   83 (385)
                      +..+|+|+|||+|..++.+
T Consensus       119 ~~~~VLDiGcGsG~l~i~~  137 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAA  137 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHH
Confidence            3578999999999876644

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.77  E-value=0.014  Score=53.44  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=26.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      ...+|+|+|||+|..++.+....              .+..+|+.-|+-.
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~--------------~~~~~v~avD~~~   75 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLV--------------GETGKVYAVDKDE   75 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEEEECCH
Confidence            34789999999999888765221              1346888888843

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.66  E-value=0.0057  Score=56.60  Aligned_cols=159  Identities=13%  Similarity=0.103  Sum_probs=90.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc--e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS--Y  143 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~--~  143 (385)
                      -.-++++|||||+|=-..-                ..|--.|.+-|=..|+=.-+-++...           .++.+  +
T Consensus        77 K~~vLEvgcGtG~Nfkfy~----------------~~p~~svt~lDpn~~mee~~~ks~~E-----------~k~~~~~~  129 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYP----------------WKPINSVTCLDPNEKMEEIADKSAAE-----------KKPLQVER  129 (252)
T ss_pred             ccceEEecccCCCCccccc----------------CCCCceEEEeCCcHHHHHHHHHHHhh-----------ccCcceEE
Confidence            3567999999999953220                12567888888544433333333221           12222  4


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |+.|-+-+ .-|| ++.|+|.|++..+|-=..++-..                                      |+.-.
T Consensus       130 fvva~ge~-l~~l-~d~s~DtVV~TlvLCSve~~~k~--------------------------------------L~e~~  169 (252)
T KOG4300|consen  130 FVVADGEN-LPQL-ADGSYDTVVCTLVLCSVEDPVKQ--------------------------------------LNEVR  169 (252)
T ss_pred             EEeechhc-Cccc-ccCCeeeEEEEEEEeccCCHHHH--------------------------------------HHHHH
Confidence            67664444 3333 99999999998877543332222                                      34467


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHc--CCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQE--GLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~e--G~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      +-|+|||++++.=-|++..             ..+...|++.++.  -++          -+-+.=-.|.-+.|+++. |
T Consensus       170 rlLRpgG~iifiEHva~~y-------------~~~n~i~q~v~ep~~~~~----------~dGC~ltrd~~e~Leda~-f  225 (252)
T KOG4300|consen  170 RLLRPGGRIIFIEHVAGEY-------------GFWNRILQQVAEPLWHLE----------SDGCVLTRDTGELLEDAE-F  225 (252)
T ss_pred             HhcCCCcEEEEEecccccc-------------hHHHHHHHHHhchhhhee----------ccceEEehhHHHHhhhcc-c
Confidence            8999999999988877421             1133334333221  111          111222345555677665 8


Q ss_pred             EecEEEEEeCCCCC
Q 016644          302 VINKLEVFKGGSPL  315 (385)
Q Consensus       302 ~i~~le~~~~~~~~  315 (385)
                      ++...+.+..++.+
T Consensus       226 ~~~~~kr~~~~ttw  239 (252)
T KOG4300|consen  226 SIDSCKRFNFGTTW  239 (252)
T ss_pred             ccchhhcccCCceE
Confidence            88888887655443

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.63  E-value=0.036  Score=50.59  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=26.8

Q ss_pred             HHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCC
Q 016644          218 FLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGL  270 (385)
Q Consensus       218 FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~  270 (385)
                      .|.....-|+|||++|+...-.                +.+..++..|.+.|.
T Consensus       117 ile~~~~~l~~ggrlV~naitl----------------E~~~~a~~~~~~~g~  153 (187)
T COG2242         117 ILEAAWERLKPGGRLVANAITL----------------ETLAKALEALEQLGG  153 (187)
T ss_pred             HHHHHHHHcCcCCeEEEEeecH----------------HHHHHHHHHHHHcCC
Confidence            3455678899999999887332                557777777777664

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=96.62  E-value=0.019  Score=54.79  Aligned_cols=34  Identities=15%  Similarity=0.318  Sum_probs=26.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      +.+|+|+|||+|..++.+....               |..+|+..|+-.
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~---------------~~~~v~~vDis~  120 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAAL---------------DGIELHAADIDP  120 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhC---------------CCCEEEEEECCH
Confidence            4689999999999998886332               456888888843

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=96.52  E-value=0.0031  Score=61.63  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHH
Q 016644           42 QSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        42 ~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~   84 (385)
                      ..++.+|++..           .+..+++|+|||||-.|+...
T Consensus       150 ~lcL~~Le~~~-----------~~g~~vlDvGcGSGILaIAa~  181 (300)
T COG2264         150 SLCLEALEKLL-----------KKGKTVLDVGCGSGILAIAAA  181 (300)
T ss_pred             HHHHHHHHHhh-----------cCCCEEEEecCChhHHHHHHH
Confidence            34566666644           256899999999999998775

>PRK00811 spermidine synthase; Provisional

Probab=96.47  E-value=0.0081  Score=58.42  Aligned_cols=115  Identities=14%  Similarity=0.128  Sum_probs=64.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++-+|+|+|||+|..+..+++        +       ++.-+|...|+-..--...-+.++......     .+ .+++ 
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~--------~-------~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-----~~-d~rv~  134 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLK--------H-------PSVEKITLVEIDERVVEVCRKYLPEIAGGA-----YD-DPRVE  134 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHc--------C-------CCCCEEEEEeCCHHHHHHHHHHhHHhcccc-----cc-CCceE
Confidence            567899999999998776651        1       123478888885433333322232110000     00 1222 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ++.+-+..|-.+  +++++|+|++-.+-+|.  .+..+                         |.       ..|++...
T Consensus       135 v~~~Da~~~l~~--~~~~yDvIi~D~~dp~~--~~~~l-------------------------~t-------~ef~~~~~  178 (283)
T PRK00811        135 LVIGDGIKFVAE--TENSFDVIIVDSTDPVG--PAEGL-------------------------FT-------KEFYENCK  178 (283)
T ss_pred             EEECchHHHHhh--CCCcccEEEECCCCCCC--chhhh-------------------------hH-------HHHHHHHH
Confidence            333433343333  57899999997665551  11111                         11       35667778


Q ss_pred             hhhccCCeEEEEe
Q 016644          224 KEMKRCGSMFLVC  236 (385)
Q Consensus       224 ~EL~pGG~lvl~~  236 (385)
                      +-|+|||.|++..
T Consensus       179 ~~L~~gGvlv~~~  191 (283)
T PRK00811        179 RALKEDGIFVAQS  191 (283)
T ss_pred             HhcCCCcEEEEeC
Confidence            9999999998653

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.43  E-value=0.013  Score=60.34  Aligned_cols=126  Identities=13%  Similarity=0.110  Sum_probs=76.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      ..+|+|+|||+|.-|+.+....              .+.-+|+..|+-.+-...+-+.+...           ...++ +
T Consensus       238 g~~VLD~cagpGgkt~~la~~~--------------~~~g~V~a~Dis~~rl~~~~~n~~r~-----------g~~~v~~  292 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIAELM--------------KDQGKILAVDISREKIQLVEKHAKRL-----------KLSSIEI  292 (431)
T ss_pred             CCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCeEEE
Confidence            3689999999999998886322              13468999999655544443333211           01111 2


Q ss_pred             eccccCcccccc--CCCCcccEEEc---ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL--FPTRSIDFFHS---AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       145 ~~~vpgSFy~rL--fP~~Svd~~~S---s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      ..+   +. ..+  +.++++|.|+.   .+.+..+.+.|.....               .+++    -..+..+.-..+|
T Consensus       293 ~~~---Da-~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~----~~~~l~~~Q~~iL  349 (431)
T PRK14903        293 KIA---DA-ERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKE----DFKKLSEIQLRIV  349 (431)
T ss_pred             EEC---ch-hhhhhhhhccCCEEEECCCCCCCccccCChHHHHh---------------CCHH----HHHHHHHHHHHHH
Confidence            222   21 111  23568999986   3456666666655321               1122    1233445557788


Q ss_pred             HHHHhhhccCCeEEEEeccC
Q 016644          220 GARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      ..-++-|+|||+||.++-..
T Consensus       350 ~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        350 SQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             HHHHHhcCCCCEEEEEECCC
Confidence            88999999999999888654

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.39  E-value=0.0049  Score=57.53  Aligned_cols=144  Identities=19%  Similarity=0.269  Sum_probs=80.6

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCce-eEEecCCCCCchHHHHh-cCCCCCCchhHhhhcCcCC
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEF-SAFFSDLPSNDFNTLFQ-LLPPIGSSMEECLASDTHR  141 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~-qv~~nDLp~NDFn~lF~-~l~~~~~~~~~~~~~~~~~  141 (385)
                      .+..+.+|.|||-|+-|-.++.                 |-+ +|-+.|. .--|-.-.+ .+..         ...+..
T Consensus        54 ~~~~~alDcGAGIGRVTk~lLl-----------------~~f~~VDlVEp-~~~Fl~~a~~~l~~---------~~~~v~  106 (218)
T PF05891_consen   54 PKFNRALDCGAGIGRVTKGLLL-----------------PVFDEVDLVEP-VEKFLEQAKEYLGK---------DNPRVG  106 (218)
T ss_dssp             ---SEEEEET-TTTHHHHHTCC-----------------CC-SEEEEEES--HHHHHHHHHHTCC---------GGCCEE
T ss_pred             CCcceEEecccccchhHHHHHH-----------------HhcCEeEEecc-CHHHHHHHHHHhcc---------cCCCcc
Confidence            3568899999999998876641                 212 2223332 113322222 2221         012234


Q ss_pred             ceeeccccCccccccCCC-CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          142 SYFAAGVPGSFYRRLFPT-RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       142 ~~f~~~vpgSFy~rLfP~-~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      .+|.+|     .+..-|+ ++.|+||.-|++..|++                                    +||..||+
T Consensus       107 ~~~~~g-----LQ~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~  145 (218)
T PF05891_consen  107 EFYCVG-----LQDFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLK  145 (218)
T ss_dssp             EEEES------GGG----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHH
T ss_pred             eEEecC-----HhhccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHH
Confidence            567666     5666676 79999999888877755                                    48999999


Q ss_pred             HHHhhhccCCeEEEE-eccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcC
Q 016644          221 ARSKEMKRCGSMFLV-CLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG  299 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~-~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~g  299 (385)
                      ...+.|+|||.+|+= +.....          .                ..++++  |    -...||.+.++.+++++|
T Consensus       146 RCk~~L~~~G~IvvKEN~~~~~----------~----------------~~~D~~--D----sSvTRs~~~~~~lF~~AG  193 (218)
T PF05891_consen  146 RCKQALKPNGVIVVKENVSSSG----------F----------------DEFDEE--D----SSVTRSDEHFRELFKQAG  193 (218)
T ss_dssp             HHHHHEEEEEEEEEEEEEESSS----------E----------------EEEETT--T----TEEEEEHHHHHHHHHHCT
T ss_pred             HHHHhCcCCcEEEEEecCCCCC----------C----------------cccCCc--c----CeeecCHHHHHHHHHHcC
Confidence            999999999988762 222210          0                011111  1    345688899999999999


Q ss_pred             ceEecEEEE
Q 016644          300 SFVINKLEV  308 (385)
Q Consensus       300 sF~i~~le~  308 (385)
                       +++.+-+.
T Consensus       194 -l~~v~~~~  201 (218)
T PF05891_consen  194 -LRLVKEEK  201 (218)
T ss_dssp             --EEEEEEE
T ss_pred             -CEEEEecc
Confidence             87766554

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.39  E-value=0.01  Score=56.66  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhhhccCCeEEEEe
Q 016644          214 DLAAFLGARSKEMKRCGSMFLVC  236 (385)
Q Consensus       214 D~~~FL~~Ra~EL~pGG~lvl~~  236 (385)
                      ||..|++--.+-|+|||.|.+.=
T Consensus       242 n~~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  242 NLADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             cHHHHHHHHHHHhccCceEEEEe
Confidence            57788888899999999996653

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.37  E-value=0.0074  Score=57.05  Aligned_cols=104  Identities=19%  Similarity=0.233  Sum_probs=63.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      -.+|+|+|||-|..|..+.        +         --.+|+-.|+-.-.--. .+.-..     ++....    + |.
T Consensus        60 g~~vLDvGCGgG~Lse~mA--------r---------~Ga~VtgiD~se~~I~~-Ak~ha~-----e~gv~i----~-y~  111 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLA--------R---------LGASVTGIDASEKPIEV-AKLHAL-----ESGVNI----D-YR  111 (243)
T ss_pred             CCeEEEecCCccHhhHHHH--------H---------CCCeeEEecCChHHHHH-HHHhhh-----hccccc----c-ch
Confidence            4899999999997777664        1         23789999985311110 110000     000000    0 11


Q ss_pred             ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .+   . -+.| ...+++|+|.|.=.|+-+.+   +                                   ..|+++.++
T Consensus       112 ~~---~-~edl~~~~~~FDvV~cmEVlEHv~d---p-----------------------------------~~~~~~c~~  149 (243)
T COG2227         112 QA---T-VEDLASAGGQFDVVTCMEVLEHVPD---P-----------------------------------ESFLRACAK  149 (243)
T ss_pred             hh---h-HHHHHhcCCCccEEEEhhHHHccCC---H-----------------------------------HHHHHHHHH
Confidence            11   1 2455 33489999998777766544   2                                   236688999


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      =+||||.|+++..-|
T Consensus       150 lvkP~G~lf~STinr  164 (243)
T COG2227         150 LVKPGGILFLSTINR  164 (243)
T ss_pred             HcCCCcEEEEecccc
Confidence            999999999999877

>PRK14968 putative methyltransferase; Provisional

Probab=96.36  E-value=0.012  Score=52.59  Aligned_cols=125  Identities=10%  Similarity=0.029  Sum_probs=66.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+|||+|..++.+...                 ..+++.-|+..+-....-+++...        ........+ 
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~-----------------~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~-   77 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKN-----------------GKKVVGVDINPYAVECAKCNAKLN--------NIRNNGVEV-   77 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhh-----------------cceEEEEECCHHHHHHHHHHHHHc--------CCCCcceEE-
Confidence            358999999999987776521                 146777787544433332222110        000000112 


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                        +.+++...+ +++++|+++++..+.+-.  |.....   ..++.  .+..+..          ....+..|++.-.+-
T Consensus        78 --~~~d~~~~~-~~~~~d~vi~n~p~~~~~--~~~~~~---~~~~~--~~~~~~~----------~~~~~~~~i~~~~~~  137 (188)
T PRK14968         78 --IRSDLFEPF-RGDKFDVILFNPPYLPTE--EEEEWD---DWLNY--ALSGGKD----------GREVIDRFLDEVGRY  137 (188)
T ss_pred             --Eeccccccc-cccCceEEEECCCcCCCC--chhhhh---hhhhh--hhccCcC----------hHHHHHHHHHHHHHh
Confidence              334655544 566999999876654321  111100   00000  0000000          112356778888999


Q ss_pred             hccCCeEEEEe
Q 016644          226 MKRCGSMFLVC  236 (385)
Q Consensus       226 L~pGG~lvl~~  236 (385)
                      |+|||.+++..
T Consensus       138 Lk~gG~~~~~~  148 (188)
T PRK14968        138 LKPGGRILLLQ  148 (188)
T ss_pred             cCCCeEEEEEE
Confidence            99999998876

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=96.35  E-value=0.018  Score=56.28  Aligned_cols=107  Identities=20%  Similarity=0.303  Sum_probs=64.5

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc--ee
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS--YF  144 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~--~f  144 (385)
                      -+|||+|||-|...+.+.+        ..       |..++.+.|.   |+-.+-.+-.        ..+.+...+  +|
T Consensus       160 ~~vlDlGCG~Gvlg~~la~--------~~-------p~~~vtmvDv---n~~Av~~ar~--------Nl~~N~~~~~~v~  213 (300)
T COG2813         160 GKVLDLGCGYGVLGLVLAK--------KS-------PQAKLTLVDV---NARAVESARK--------NLAANGVENTEVW  213 (300)
T ss_pred             CcEEEeCCCccHHHHHHHH--------hC-------CCCeEEEEec---CHHHHHHHHH--------hHHHcCCCccEEE
Confidence            3899999999999988863        22       7899999996   5554422111        111111222  22


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .    .+=|+.+..  ++|+|+||         |+....         +    .+...+.+           .++..-++
T Consensus       214 ~----s~~~~~v~~--kfd~IisN---------PPfh~G---------~----~v~~~~~~-----------~~i~~A~~  254 (300)
T COG2813         214 A----SNLYEPVEG--KFDLIISN---------PPFHAG---------K----AVVHSLAQ-----------EIIAAAAR  254 (300)
T ss_pred             E----ecccccccc--cccEEEeC---------CCccCC---------c----chhHHHHH-----------HHHHHHHH
Confidence            2    255777765  99999997         433211         0    01111111           34455678


Q ss_pred             hhccCCeEEEEecc
Q 016644          225 EMKRCGSMFLVCLG  238 (385)
Q Consensus       225 EL~pGG~lvl~~~g  238 (385)
                      -|++||.|.++.-|
T Consensus       255 ~L~~gGeL~iVan~  268 (300)
T COG2813         255 HLKPGGELWIVANR  268 (300)
T ss_pred             hhccCCEEEEEEcC
Confidence            99999999888753

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.31  E-value=0.011  Score=58.89  Aligned_cols=50  Identities=24%  Similarity=0.326  Sum_probs=37.2

Q ss_pred             cCCCC--cccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEE
Q 016644          156 LFPTR--SIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMF  233 (385)
Q Consensus       156 LfP~~--Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  233 (385)
                      .+++.  .+|+|-+-+|||..=....                                  -...||+..++-|+|||.++
T Consensus       138 ~~~~~~~~FDvVScQFalHY~Fese~----------------------------------~ar~~l~Nvs~~Lk~GG~FI  183 (331)
T PF03291_consen  138 KLPPRSRKFDVVSCQFALHYAFESEE----------------------------------KARQFLKNVSSLLKPGGYFI  183 (331)
T ss_dssp             TSSSTTS-EEEEEEES-GGGGGSSHH----------------------------------HHHHHHHHHHHTEEEEEEEE
T ss_pred             hccccCCCcceeehHHHHHHhcCCHH----------------------------------HHHHHHHHHHHhcCCCCEEE
Confidence            35555  9999999999999644222                                  24678999999999999999


Q ss_pred             EEeccC
Q 016644          234 LVCLGR  239 (385)
Q Consensus       234 l~~~g~  239 (385)
                      .+++-.
T Consensus       184 gT~~d~  189 (331)
T PF03291_consen  184 GTTPDS  189 (331)
T ss_dssp             EEEE-H
T ss_pred             EEecCH
Confidence            998643

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.30  E-value=0.02  Score=59.23  Aligned_cols=125  Identities=10%  Similarity=0.038  Sum_probs=73.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc-ee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS-YF  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-~f  144 (385)
                      ..+|+|+|||+|..|+.+...+        .      ..-+|+..|+-......+-+.+...           ...+ .+
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~--------~------~~~~V~avD~s~~~l~~~~~~~~~~-----------g~~~v~~  305 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELM--------Q------NRGQITAVDRYPQKLEKIRSHASAL-----------GITIIET  305 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHh--------C------CCcEEEEEECCHHHHHHHHHHHHHh-----------CCCeEEE
Confidence            3689999999999998776332        0      2358899998665555554444311           0112 12


Q ss_pred             eccccCccccccCCCCcccEEEc----ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHS----AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~S----s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      +.   ++. ..+.|++++|.|+.    +.+-+|- +.|.....               .+++..    .+..+.-..+|.
T Consensus       306 ~~---~Da-~~~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~~---------------~~~~~~----~~l~~~q~~iL~  361 (445)
T PRK14904        306 IE---GDA-RSFSPEEQPDAILLDAPCTGTGVLG-RRAELRWK---------------LTPEKL----AELVGLQAELLD  361 (445)
T ss_pred             Ee---Ccc-cccccCCCCCEEEEcCCCCCcchhh-cCcchhhc---------------CCHHHH----HHHHHHHHHHHH
Confidence            22   232 23346788999983    3333332 22322110               122211    223445667899


Q ss_pred             HHHhhhccCCeEEEEeccC
Q 016644          221 ARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .-++-|+|||+|+.++...
T Consensus       362 ~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        362 HAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             HHHHhcCCCcEEEEEeCCC
Confidence            9999999999999987554

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.25  E-value=0.02  Score=59.10  Aligned_cols=124  Identities=10%  Similarity=0.089  Sum_probs=68.2

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|.-|+.+.+..              .+.-+|+..|+-.+--..+-+++...           ...++  
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~--------------~~~~~v~avDi~~~~l~~~~~n~~~~-----------g~~~v--  303 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELL--------------KNTGKVVALDIHEHKLKLIEENAKRL-----------GLTNI--  303 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCeE--
Confidence            3689999999999999876322              13458889998554444443333210           01111  


Q ss_pred             ccccCcccc--ccCCCCcccEEEcc---cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYR--RLFPTRSIDFFHSA---FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       146 ~~vpgSFy~--rLfP~~Svd~~~Ss---~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      ..+-+++..  .-++ +++|+|++.   +.+..+.+.|.....               .++...    ....+--..+|.
T Consensus       304 ~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~---------------~~~~~~----~~l~~~q~~iL~  363 (444)
T PRK14902        304 ETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYN---------------KTKEDI----ESLQEIQLEILE  363 (444)
T ss_pred             EEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhc---------------CCHHHH----HHHHHHHHHHHH
Confidence            112234322  1133 789999874   233334444432210               112211    122233356788


Q ss_pred             HHHhhhccCCeEEEEe
Q 016644          221 ARSKEMKRCGSMFLVC  236 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~  236 (385)
                      .-.+-|+|||+||.++
T Consensus       364 ~a~~~LkpGG~lvyst  379 (444)
T PRK14902        364 SVAQYLKKGGILVYST  379 (444)
T ss_pred             HHHHHcCCCCEEEEEc
Confidence            8889999999998665

>PLN03075 nicotianamine synthase; Provisional

Probab=96.11  E-value=0.02  Score=56.13  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      .+-+|||+|||.|+.|.+++..      ...       |.-++.--|.-. +-+.+.+.+-.-....       ..+--|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa------~~~-------p~~~~~giD~d~-~ai~~Ar~~~~~~~gL-------~~rV~F  181 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAK------HHL-------PTTSFHNFDIDP-SANDVARRLVSSDPDL-------SKRMFF  181 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHH------hcC-------CCCEEEEEeCCH-HHHHHHHHHhhhccCc-------cCCcEE
Confidence            5688999999999987766521      112       555677777643 2222222221000000       011223


Q ss_pred             eccccCccccccCC-CCcccEEEccccccccc-CCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFP-TRSIDFFHSAFSLHWLS-QVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~rLfP-~~Svd~~~Ss~alHWLS-~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      ..+   +-.+ +.+ .+.+|+||+. ++|-.+ ..+..+                                     |..-
T Consensus       182 ~~~---Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k~~v-------------------------------------L~~l  219 (296)
T PLN03075        182 HTA---DVMD-VTESLKEYDVVFLA-ALVGMDKEEKVKV-------------------------------------IEHL  219 (296)
T ss_pred             EEC---chhh-cccccCCcCEEEEe-cccccccccHHHH-------------------------------------HHHH
Confidence            332   2111 222 4789999999 665543 333322                                     3456


Q ss_pred             HhhhccCCeEEEEe
Q 016644          223 SKEMKRCGSMFLVC  236 (385)
Q Consensus       223 a~EL~pGG~lvl~~  236 (385)
                      ++-|+|||.+++-+
T Consensus       220 ~~~LkPGG~Lvlr~  233 (296)
T PLN03075        220 GKHMAPGALLMLRS  233 (296)
T ss_pred             HHhcCCCcEEEEec
Confidence            88999999998876

>PRK04457 spermidine synthase; Provisional

Probab=96.10  E-value=0.033  Score=53.61  Aligned_cols=113  Identities=9%  Similarity=0.095  Sum_probs=62.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh-cCCCCCCchhHhhhcCcCCce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ-LLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~-~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      ++-+|+|+|||+|..+..+..        ..       |..++..-|+-..- -.+.+ .+...          ...+++
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~--------~~-------p~~~v~~VEidp~v-i~~A~~~f~~~----------~~~~rv  119 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYT--------YL-------PDTRQTAVEINPQV-IAVARNHFELP----------ENGERF  119 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHH--------hC-------CCCeEEEEECCHHH-HHHHHHHcCCC----------CCCCce
Confidence            456899999999997776652        22       56778888883322 22222 12110          001122


Q ss_pred             -eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 -FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 -f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                       ++.+=...|..+.  ++++|+|+... ++-- ..|..+.                                -..|++..
T Consensus       120 ~v~~~Da~~~l~~~--~~~yD~I~~D~-~~~~-~~~~~l~--------------------------------t~efl~~~  163 (262)
T PRK04457        120 EVIEADGAEYIAVH--RHSTDVILVDG-FDGE-GIIDALC--------------------------------TQPFFDDC  163 (262)
T ss_pred             EEEECCHHHHHHhC--CCCCCEEEEeC-CCCC-CCccccC--------------------------------cHHHHHHH
Confidence             2223222333322  35799998752 2211 1222211                                13566777


Q ss_pred             HhhhccCCeEEEEeccC
Q 016644          223 SKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~  239 (385)
                      .+-|+|||+|++...++
T Consensus       164 ~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        164 RNALSSDGIFVVNLWSR  180 (262)
T ss_pred             HHhcCCCcEEEEEcCCC
Confidence            88899999999977655

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=95.98  E-value=0.014  Score=56.66  Aligned_cols=126  Identities=13%  Similarity=0.085  Sum_probs=69.4

Q ss_pred             EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644           68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG  147 (385)
Q Consensus        68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~  147 (385)
                      +|+|+|||||.-++.+....               |...|+..|+-..=....-++...           ....+++. .
T Consensus       113 ~ilDlGTGSG~iai~la~~~---------------~~~~V~a~Dis~~Al~~A~~Na~~-----------~~l~~~~~-~  165 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG---------------PDAEVIAVDISPDALALARENAER-----------NGLVRVLV-V  165 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC---------------cCCeEEEEECCHHHHHHHHHHHHH-----------cCCccEEE-E
Confidence            89999999999998887433               667999999943111111111110           11112211 2


Q ss_pred             ccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 016644          148 VPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKK-QFQTDLAAFLGARSKEM  226 (385)
Q Consensus       148 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~-q~~~D~~~FL~~Ra~EL  226 (385)
                      .. ++++.+-.  .+|+++||         |+-+..+ ......+-+   .-.| ....+.. ---....+|+..-.+-|
T Consensus       166 ~~-dlf~~~~~--~fDlIVsN---------PPYip~~-~~~~~~~~~---~~EP-~~Al~~g~dGl~~~~~i~~~a~~~l  228 (280)
T COG2890         166 QS-DLFEPLRG--KFDLIVSN---------PPYIPAE-DPELLPEVV---RYEP-LLALVGGGDGLEVYRRILGEAPDIL  228 (280)
T ss_pred             ee-ecccccCC--ceeEEEeC---------CCCCCCc-ccccChhhh---ccCH-HHHHccCccHHHHHHHHHHhhHHHc
Confidence            22 66666655  89999996         6655432 110000000   0011 1111111 12235677888888999


Q ss_pred             ccCCeEEEEec
Q 016644          227 KRCGSMFLVCL  237 (385)
Q Consensus       227 ~pGG~lvl~~~  237 (385)
                      +|||.+++...
T Consensus       229 ~~~g~l~le~g  239 (280)
T COG2890         229 KPGGVLILEIG  239 (280)
T ss_pred             CCCcEEEEEEC
Confidence            99999988773

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=95.96  E-value=0.017  Score=53.09  Aligned_cols=113  Identities=21%  Similarity=0.400  Sum_probs=65.9

Q ss_pred             EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-eec
Q 016644           68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-FAA  146 (385)
Q Consensus        68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~~  146 (385)
                      .++|+|||.|...+.+.        ...       |+..++--|.-.   +.+.+.+..       ..+ ....++ ++.
T Consensus        20 l~lEIG~G~G~~l~~~A--------~~~-------Pd~n~iGiE~~~---~~v~~a~~~-------~~~-~~l~Nv~~~~   73 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELA--------KRN-------PDINFIGIEIRK---KRVAKALRK-------AEK-RGLKNVRFLR   73 (195)
T ss_dssp             EEEEET-TTSHHHHHHH--------HHS-------TTSEEEEEES-H---HHHHHHHHH-------HHH-HTTSSEEEEE
T ss_pred             eEEEecCCCCHHHHHHH--------HHC-------CCCCEEEEecch---HHHHHHHHH-------HHh-hcccceEEEE
Confidence            78999999999887775        222       788888888843   333332211       001 112344 444


Q ss_pred             cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644          147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM  226 (385)
Q Consensus       147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL  226 (385)
                      +-...+...++|++||+-++=++-==|-.+-..           |.++    ..               ..||..-++-|
T Consensus        74 ~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~-----------krRl----~~---------------~~fl~~~~~~L  123 (195)
T PF02390_consen   74 GDARELLRRLFPPGSVDRIYINFPDPWPKKRHH-----------KRRL----VN---------------PEFLELLARVL  123 (195)
T ss_dssp             S-CTTHHHHHSTTTSEEEEEEES-----SGGGG-----------GGST----TS---------------HHHHHHHHHHE
T ss_pred             ccHHHHHhhcccCCchheEEEeCCCCCcccchh-----------hhhc----CC---------------chHHHHHHHHc
Confidence            444566788999999999988876666433211           1111    11               24666678999


Q ss_pred             ccCCeEEEEe
Q 016644          227 KRCGSMFLVC  236 (385)
Q Consensus       227 ~pGG~lvl~~  236 (385)
                      +|||.+.+.+
T Consensus       124 ~~gG~l~~~T  133 (195)
T PF02390_consen  124 KPGGELYFAT  133 (195)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9999996655

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00417 speE spermidine synthase

Probab=95.89  E-value=0.019  Score=55.35  Aligned_cols=113  Identities=13%  Similarity=0.097  Sum_probs=61.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++-+|+|+|||+|..+..+++        .       .+.-++...|+-.+-....-+.++.....      .+ .+.+ 
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~--------~-------~~~~~v~~veid~~vi~~a~~~~~~~~~~------~~-~~~v~  129 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLK--------H-------KSVEKATLVDIDEKVIELSKKFLPSLAGS------YD-DPRVD  129 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHh--------C-------CCcceEEEEeCCHHHHHHHHHHhHhhccc------cc-CCceE
Confidence            456999999999997655541        1       12346778887655444433333321000      00 1111 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      +..+-+..|..+.  ++++|+|++..+-++-.  +..+                         |       -..|++..+
T Consensus       130 i~~~D~~~~l~~~--~~~yDvIi~D~~~~~~~--~~~l-------------------------~-------~~ef~~~~~  173 (270)
T TIGR00417       130 LQIDDGFKFLADT--ENTFDVIIVDSTDPVGP--AETL-------------------------F-------TKEFYELLK  173 (270)
T ss_pred             EEECchHHHHHhC--CCCccEEEEeCCCCCCc--ccch-------------------------h-------HHHHHHHHH
Confidence            1222222333332  57899999876544311  1111                         1       135666678


Q ss_pred             hhhccCCeEEEE
Q 016644          224 KEMKRCGSMFLV  235 (385)
Q Consensus       224 ~EL~pGG~lvl~  235 (385)
                      +-|+|||++++.
T Consensus       174 ~~L~pgG~lv~~  185 (270)
T TIGR00417       174 KALNEDGIFVAQ  185 (270)
T ss_pred             HHhCCCcEEEEc
Confidence            999999999886

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=95.82  E-value=0.045  Score=50.97  Aligned_cols=19  Identities=11%  Similarity=0.251  Sum_probs=15.2

Q ss_pred             ceEEeeeCCCCCcchHHHH
Q 016644           66 PFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~   84 (385)
                      -.+|+|+|||||.+|-.+.
T Consensus        73 g~~VLeIGtGsGY~aAlla   91 (209)
T PF01135_consen   73 GDRVLEIGTGSGYQAALLA   91 (209)
T ss_dssp             T-EEEEES-TTSHHHHHHH
T ss_pred             CCEEEEecCCCcHHHHHHH
Confidence            4899999999999998775

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=95.75  E-value=0.16  Score=49.12  Aligned_cols=26  Identities=15%  Similarity=0.139  Sum_probs=22.3

Q ss_pred             HHHHHHHHHhhhccCCeEEEEeccCC
Q 016644          215 LAAFLGARSKEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       215 ~~~FL~~Ra~EL~pGG~lvl~~~g~~  240 (385)
                      +..|+..-.+-|+|||.+++...++.
T Consensus       264 ~~~~~~~a~R~Lq~gg~~~le~~~~~  289 (328)
T KOG2904|consen  264 LVHYWLLATRMLQPGGFEQLELVERK  289 (328)
T ss_pred             HHHHHHhhHhhcccCCeEEEEecccc
Confidence            55677778899999999999999884

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.73  E-value=0.031  Score=55.47  Aligned_cols=19  Identities=16%  Similarity=0.331  Sum_probs=16.9

Q ss_pred             ceEEeeeCCCCCcchHHHH
Q 016644           66 PFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~   84 (385)
                      ..+|+|+|||+|.++..+.
T Consensus        81 g~~VLDIG~GtG~~a~~LA   99 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMS   99 (322)
T ss_pred             CCEEEEEeCCccHHHHHHH
Confidence            4689999999999998876

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=95.61  E-value=0.085  Score=52.28  Aligned_cols=25  Identities=16%  Similarity=0.079  Sum_probs=20.1

Q ss_pred             HHHHHHHHHhhhccCCeEEEEeccC
Q 016644          215 LAAFLGARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       215 ~~~FL~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      ...+|..-++-|+|||++++.+...
T Consensus       273 ~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       273 YERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             HHHHHHHHHHHccCCcEEEEEEcCC
Confidence            4567777788999999999988654

This family is found exclusively in the Archaea.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.26  E-value=0.12  Score=53.43  Aligned_cols=125  Identities=14%  Similarity=0.087  Sum_probs=66.2

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      ..+|+|+|||+|.-|+.+...+              .+.-+|+-.|.-..-...+-+++...           ...++ +
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~--------------~~~g~v~a~D~~~~rl~~~~~n~~r~-----------g~~~v~~  307 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELM--------------GDQGEIWAVDRSASRLKKLQENAQRL-----------GLKSIKI  307 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHh--------------CCCceEEEEcCCHHHHHHHHHHHHHc-----------CCCeEEE
Confidence            4689999999999998886322              02357888888544433333333211           01121 2


Q ss_pred             eccccCccc--ccc--CCCCcccEEEccc---ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFY--RRL--FPTRSIDFFHSAF---SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAA  217 (385)
Q Consensus       145 ~~~vpgSFy--~rL--fP~~Svd~~~Ss~---alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~  217 (385)
                      +.   ++.-  ...  ++++++|.|+.-.   .+-=+.+.|....               ..+++..    ..+.+.-..
T Consensus       308 ~~---~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~---------------~~~~~~~----~~l~~~Q~~  365 (434)
T PRK14901        308 LA---ADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARW---------------RQTPEKI----QELAPLQAE  365 (434)
T ss_pred             Ee---CChhhcccccccccccCCEEEEeCCCCcccccccCcchhh---------------hCCHHHH----HHHHHHHHH
Confidence            22   2221  111  3467889887421   0111111222110               0122211    223344577


Q ss_pred             HHHHHHhhhccCCeEEEEec
Q 016644          218 FLGARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       218 FL~~Ra~EL~pGG~lvl~~~  237 (385)
                      +|..-++-|+|||+||.++.
T Consensus       366 iL~~a~~~lkpgG~lvystc  385 (434)
T PRK14901        366 LLESLAPLLKPGGTLVYATC  385 (434)
T ss_pred             HHHHHHHhcCCCCEEEEEeC
Confidence            88999999999999987763

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.19  E-value=0.056  Score=56.94  Aligned_cols=141  Identities=13%  Similarity=0.129  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC
Q 016644           34 SQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP  113 (385)
Q Consensus        34 S~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp  113 (385)
                      ...|++.++...|.+--..+.+    + . ...-.++|+|||.|..++.+..        ..       |+..++--|.-
T Consensus       322 ~~~q~~~~e~~~p~~~i~~ekl----f-~-~~~p~~lEIG~G~G~~~~~~A~--------~~-------p~~~~iGiE~~  380 (506)
T PRK01544        322 SGVQQNLLDNELPKYLFSKEKL----V-N-EKRKVFLEIGFGMGEHFINQAK--------MN-------PDALFIGVEVY  380 (506)
T ss_pred             CHHHHHHHHhhhhhhCCCHHHh----C-C-CCCceEEEECCCchHHHHHHHH--------hC-------CCCCEEEEEee
Confidence            4478888888888765333332    2 1 2345679999999998887752        22       77777777764


Q ss_pred             CCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCc
Q 016644          114 SNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGK  193 (385)
Q Consensus       114 ~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~  193 (385)
                      .   +.+-+.+..        .+...-.++.+..-...+....||++|||-+|-++.==|-.+...           |.+
T Consensus       381 ~---~~~~~~~~~--------~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~-----------krR  438 (506)
T PRK01544        381 L---NGVANVLKL--------AGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQK-----------KKR  438 (506)
T ss_pred             H---HHHHHHHHH--------HHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCc-----------ccc
Confidence            3   333332221        001112344332222234577799999999999988777433211           112


Q ss_pred             eEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEe
Q 016644          194 VYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVC  236 (385)
Q Consensus       194 i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~  236 (385)
                      +    .+               ..||..-++-|+|||.+.+.+
T Consensus       439 l----~~---------------~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        439 I----FN---------------KERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             c----cC---------------HHHHHHHHHhcCCCCEEEEEc
Confidence            2    11               235666789999999996654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=95.19  E-value=0.024  Score=50.50  Aligned_cols=76  Identities=8%  Similarity=-0.006  Sum_probs=46.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..|..+++.                 ..+++.-|+-......+-+.+..             ..++  
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~-----------------~~~v~~vE~~~~~~~~~~~~~~~-------------~~~v--   61 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER-----------------AARVTAIEIDPRLAPRLREKFAA-------------ADNL--   61 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc-----------------CCeEEEEECCHHHHHHHHHHhcc-------------CCCE--
Confidence            358999999999999988632                 13567777643232333222221             0111  


Q ss_pred             ccccCccccccCCCCcccEEEccccccc
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHW  173 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHW  173 (385)
                      -.+-+++.+-.+++.++|.++|+.-+|+
T Consensus        62 ~ii~~D~~~~~~~~~~~d~vi~n~Py~~   89 (169)
T smart00650       62 TVIHGDALKFDLPKLQPYKVVGNLPYNI   89 (169)
T ss_pred             EEEECchhcCCccccCCCEEEECCCccc
Confidence            1244576665577777899998765554

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.18  E-value=0.11  Score=49.89  Aligned_cols=126  Identities=10%  Similarity=0.054  Sum_probs=66.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      ..+|+|+|||+|.-|+.+.+.+        .      +.-.|+..|.-..-...+-+++...           ...++ +
T Consensus        72 g~~VLDl~ag~G~kt~~la~~~--------~------~~g~v~a~D~~~~~l~~~~~n~~~~-----------g~~~v~~  126 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQISALM--------K------NEGAIVANEFSKSRTKVLIANINRC-----------GVLNVAV  126 (264)
T ss_pred             cCEEEEECCCchHHHHHHHHHc--------C------CCCEEEEEcCCHHHHHHHHHHHHHc-----------CCCcEEE
Confidence            4689999999999998876332        1      1246888898655555544444321           01121 1


Q ss_pred             eccccCccccccCCCCcccEEEcc---cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSA---FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss---~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      +.+-... +.  .+.+++|.|+.-   +..-.+.+.|.....               .+++    -..+..+.-..+|..
T Consensus       127 ~~~D~~~-~~--~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~---------------~~~~----~~~~l~~~q~~iL~~  184 (264)
T TIGR00446       127 TNFDGRV-FG--AAVPKFDAILLDAPCSGEGVIRKDPSRKKN---------------WSEE----DIQEISALQKELIDS  184 (264)
T ss_pred             ecCCHHH-hh--hhccCCCEEEEcCCCCCCcccccChhhhhc---------------CCHH----HHHHHHHHHHHHHHH
Confidence            1111111 11  123458887742   122222222322100               0121    112334445668898


Q ss_pred             HHhhhccCCeEEEEecc
Q 016644          222 RSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g  238 (385)
                      -++-|+|||+||.++..
T Consensus       185 a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       185 AFDALKPGGVLVYSTCS  201 (264)
T ss_pred             HHHhcCCCCEEEEEeCC
Confidence            99999999999877643

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=95.10  E-value=0.066  Score=52.77  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=68.1

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC---CCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP---SNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp---~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      -.++|||||-|.--+-.-..-                -=+++..|..   .||-..-.+.+...       -+..-+...
T Consensus       119 ~~~~~LgCGKGGDLlKw~kAg----------------I~~~igiDIAevSI~qa~~RYrdm~~r-------~~~~~f~a~  175 (389)
T KOG1975|consen  119 DDVLDLGCGKGGDLLKWDKAG----------------IGEYIGIDIAEVSINQARKRYRDMKNR-------FKKFIFTAV  175 (389)
T ss_pred             cccceeccCCcccHhHhhhhc----------------ccceEeeehhhccHHHHHHHHHHHHhh-------hhcccceeE
Confidence            457889999999655443111                1233444443   45555444433210       001112344


Q ss_pred             eeccccCcccccc---C--CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL---F--PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAF  218 (385)
Q Consensus       144 f~~~vpgSFy~rL---f--P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~F  218 (385)
                      |++|  -+|+++|   +  ++-++|+|=|=+|+|+.=.--+                                  -...+
T Consensus       176 f~~~--Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee----------------------------------~ar~~  219 (389)
T KOG1975|consen  176 FIAA--DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEE----------------------------------SARIA  219 (389)
T ss_pred             EEEe--ccchhHHHHhccCCCCCcceeeeeeeEeeeeccHH----------------------------------HHHHH
Confidence            5433  5777555   3  5666999999999998422111                                  12356


Q ss_pred             HHHHHhhhccCCeEEEEeccC
Q 016644          219 LGARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       219 L~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      |+.-++-|+|||.|+-+++-.
T Consensus       220 l~Nva~~LkpGG~FIgTiPds  240 (389)
T KOG1975|consen  220 LRNVAKCLKPGGVFIGTIPDS  240 (389)
T ss_pred             HHHHHhhcCCCcEEEEecCcH
Confidence            788999999999999888654

>PRK03612 spermidine synthase; Provisional

Probab=95.01  E-value=0.14  Score=54.02  Aligned_cols=150  Identities=15%  Similarity=0.117  Sum_probs=75.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh--cCCCCCCchhHhhhcCcCCc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ--LLPPIGSSMEECLASDTHRS  142 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~--~l~~~~~~~~~~~~~~~~~~  142 (385)
                      ++-+|+|+|||+|..+..+.        ++       ++.-++..-|+-..-....-+  .++.....  .   .+ .++
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll--------~~-------~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~--~---~~-dpr  355 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVL--------KY-------PDVEQVTLVDLDPAMTELARTSPALRALNGG--A---LD-DPR  355 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHH--------hC-------CCcCeEEEEECCHHHHHHHHhCCcchhhhcc--c---cC-CCc
Confidence            46789999999998665554        11       122577888875433333322  12211000  0   00 112


Q ss_pred             e-eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          143 Y-FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       143 ~-f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      + ++.+=+..|..+  .++++|+|++...-.|-   |..                       .+.|.       ..|++.
T Consensus       356 v~vi~~Da~~~l~~--~~~~fDvIi~D~~~~~~---~~~-----------------------~~L~t-------~ef~~~  400 (521)
T PRK03612        356 VTVVNDDAFNWLRK--LAEKFDVIIVDLPDPSN---PAL-----------------------GKLYS-------VEFYRL  400 (521)
T ss_pred             eEEEEChHHHHHHh--CCCCCCEEEEeCCCCCC---cch-----------------------hccch-------HHHHHH
Confidence            2 222322233222  35789999998544331   110                       01111       235555


Q ss_pred             HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccc
Q 016644          222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVY  284 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y  284 (385)
                      -.+-|+|||++++......     .      . .+.+.+..+.|.+.|.  .-..-..++|.|
T Consensus       401 ~~~~L~pgG~lv~~~~~~~-----~------~-~~~~~~i~~~l~~~gf--~v~~~~~~vps~  449 (521)
T PRK03612        401 LKRRLAPDGLLVVQSTSPY-----F------A-PKAFWSIEATLEAAGL--ATTPYHVNVPSF  449 (521)
T ss_pred             HHHhcCCCeEEEEecCCcc-----c------c-hHHHHHHHHHHHHcCC--EEEEEEeCCCCc
Confidence            6688999999988753221     0      0 1345666666766675  222223345666

>PLN02366 spermidine synthase

Probab=94.99  E-value=0.077  Score=52.35  Aligned_cols=117  Identities=12%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +++-+|+++|||.|.....++        ++       ++.-+|..-|+...--....+.++.....      .++.+--
T Consensus        90 ~~pkrVLiIGgG~G~~~rell--------k~-------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~------~~dpRv~  148 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIA--------RH-------SSVEQIDICEIDKMVIDVSKKFFPDLAVG------FDDPRVN  148 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHH--------hC-------CCCCeEEEEECCHHHHHHHHHhhhhhccc------cCCCceE
Confidence            356899999999999554443        11       12357777787643222222223321000      0111111


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ++.+=+..|.++. |++++|+|++-.+-+|-  .+..+                         |.       ..|++...
T Consensus       149 vi~~Da~~~l~~~-~~~~yDvIi~D~~dp~~--~~~~L-------------------------~t-------~ef~~~~~  193 (308)
T PLN02366        149 LHIGDGVEFLKNA-PEGTYDAIIVDSSDPVG--PAQEL-------------------------FE-------KPFFESVA  193 (308)
T ss_pred             EEEChHHHHHhhc-cCCCCCEEEEcCCCCCC--chhhh-------------------------hH-------HHHHHHHH
Confidence            3334333444433 57789999986655442  11111                         11       34666778


Q ss_pred             hhhccCCeEEEEe
Q 016644          224 KEMKRCGSMFLVC  236 (385)
Q Consensus       224 ~EL~pGG~lvl~~  236 (385)
                      +-|+|||.|+...
T Consensus       194 ~~L~pgGvlv~q~  206 (308)
T PLN02366        194 RALRPGGVVCTQA  206 (308)
T ss_pred             HhcCCCcEEEECc
Confidence            8899999997653

>PRK07402 precorrin-6B methylase; Provisional

Probab=94.86  E-value=0.054  Score=49.38  Aligned_cols=34  Identities=15%  Similarity=0.048  Sum_probs=25.2

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      .-+|+|+|||+|..|+.+..        ..       |..+|+.-|+-.
T Consensus        41 ~~~VLDiG~G~G~~~~~la~--------~~-------~~~~V~~vD~s~   74 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGL--------LC-------PKGRVIAIERDE   74 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHH--------HC-------CCCEEEEEeCCH
Confidence            46899999999998887752        11       456788888743

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.078  Score=49.32  Aligned_cols=20  Identities=10%  Similarity=0.177  Sum_probs=17.1

Q ss_pred             CceEEeeeCCCCCcchHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~   84 (385)
                      +..+|+|+|||||.+|-.+.
T Consensus        72 ~g~~VLEIGtGsGY~aAvla   91 (209)
T COG2518          72 PGDRVLEIGTGSGYQAAVLA   91 (209)
T ss_pred             CCCeEEEECCCchHHHHHHH
Confidence            45899999999999987664

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=94.76  E-value=0.034  Score=53.81  Aligned_cols=130  Identities=18%  Similarity=0.125  Sum_probs=79.9

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEE
Q 016644           29 SYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAF  108 (385)
Q Consensus        29 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~  108 (385)
                      -|++.+..=...-....|++.+.+....        ....++|.|||-|.-+..                   .|...++
T Consensus        17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~~--------~gsv~~d~gCGngky~~~-------------------~p~~~~i   69 (293)
T KOG1331|consen   17 IYDKIATHFSATRAAPWPMVRQFLDSQP--------TGSVGLDVGCGNGKYLGV-------------------NPLCLII   69 (293)
T ss_pred             HHHHhhhhccccccCccHHHHHHHhccC--------CcceeeecccCCcccCcC-------------------CCcceee
Confidence            5777766644444556667777665442        357889999999974321                   1445566


Q ss_pred             ecCCCCCchHHHHhcCCCCCCchhHhhhcCcC-CceeeccccCccccccCCCCcccEEEcccccccccCCchhhhccccc
Q 016644          109 FSDLPSNDFNTLFQLLPPIGSSMEECLASDTH-RSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM  187 (385)
Q Consensus       109 ~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~-~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~  187 (385)
                      -.|+-.       .++..-        +.... ..++.     .-..-.+++.|+|++.|.+.+||||..-.-.      
T Consensus        70 g~D~c~-------~l~~~a--------k~~~~~~~~~a-----d~l~~p~~~~s~d~~lsiavihhlsT~~RR~------  123 (293)
T KOG1331|consen   70 GCDLCT-------GLLGGA--------KRSGGDNVCRA-----DALKLPFREESFDAALSIAVIHHLSTRERRE------  123 (293)
T ss_pred             ecchhh-------hhcccc--------ccCCCceeehh-----hhhcCCCCCCccccchhhhhhhhhhhHHHHH------
Confidence            666521       222210        00111 11222     2235558999999999999999998743221      


Q ss_pred             ccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCC
Q 016644          188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       188 ~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~  240 (385)
                                                   +-|.--.++|+|||.+.+...+..
T Consensus       124 -----------------------------~~l~e~~r~lrpgg~~lvyvwa~~  147 (293)
T KOG1331|consen  124 -----------------------------RALEELLRVLRPGGNALVYVWALE  147 (293)
T ss_pred             -----------------------------HHHHHHHHHhcCCCceEEEEehhh
Confidence                                         112335789999999999998874

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=94.73  E-value=0.72  Score=43.19  Aligned_cols=167  Identities=20%  Similarity=0.241  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC
Q 016644           45 LHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL  124 (385)
Q Consensus        45 ~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l  124 (385)
                      -|.|.+.+..+..      ...-+|++-|||.|...+.+.+                 ...+|+--|+...=-...|+.-
T Consensus        23 ~p~L~~~~~~l~~------~~~~rvLvPgCG~g~D~~~La~-----------------~G~~VvGvDls~~Ai~~~~~e~   79 (218)
T PF05724_consen   23 NPALVEYLDSLAL------KPGGRVLVPGCGKGYDMLWLAE-----------------QGHDVVGVDLSPTAIEQAFEEN   79 (218)
T ss_dssp             THHHHHHHHHHTT------STSEEEEETTTTTSCHHHHHHH-----------------TTEEEEEEES-HHHHHHHHHHC
T ss_pred             CHHHHHHHHhcCC------CCCCeEEEeCCCChHHHHHHHH-----------------CCCeEEEEecCHHHHHHHHHHh
Confidence            4555555554422      2457899999999998777752                 1378888888765444444432


Q ss_pred             CC-CCCchhHhhhcCcCCceeeccccCccccccCCC--CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCH
Q 016644          125 PP-IGSSMEECLASDTHRSYFAAGVPGSFYRRLFPT--RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANE  201 (385)
Q Consensus       125 ~~-~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~--~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~  201 (385)
                      .. .........+......+  .-+-|+||. +-|.  +++|+|+=-.+|+=|   |+.                     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i--~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp~---------------------  132 (218)
T PF05724_consen   80 NLEPTVTSVGGFKRYQAGRI--TIYCGDFFE-LPPEDVGKFDLIYDRTFLCAL---PPE---------------------  132 (218)
T ss_dssp             TTEEECTTCTTEEEETTSSE--EEEES-TTT-GGGSCHHSEEEEEECSSTTTS----GG---------------------
T ss_pred             ccCCCcccccceeeecCCce--EEEEccccc-CChhhcCCceEEEEecccccC---CHH---------------------
Confidence            21 00000000000011111  122347776 2222  358999988888764   333                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccc
Q 016644          202 HTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNI  281 (385)
Q Consensus       202 ~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~  281 (385)
                       .++.|.+|           -++-|+|||++++.++-.+..                                   ...-
T Consensus       133 -~R~~Ya~~-----------l~~ll~p~g~~lLi~l~~~~~-----------------------------------~~~G  165 (218)
T PF05724_consen  133 -MRERYAQQ-----------LASLLKPGGRGLLITLEYPQG-----------------------------------EMEG  165 (218)
T ss_dssp             -GHHHHHHH-----------HHHCEEEEEEEEEEEEES-CS-----------------------------------CSSS
T ss_pred             -HHHHHHHH-----------HHHHhCCCCcEEEEEEEcCCc-----------------------------------CCCC
Confidence             35667766           678899999955554432100                                   0012


Q ss_pred             ccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          282 PVYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       282 P~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      |=|.-+.+||.+++. .+ |+|+.++..+
T Consensus       166 PPf~v~~~ev~~l~~-~~-f~i~~l~~~~  192 (218)
T PF05724_consen  166 PPFSVTEEEVRELFG-PG-FEIEELEEED  192 (218)
T ss_dssp             SS----HHHHHHHHT-TT-EEEEEEEEEE
T ss_pred             cCCCCCHHHHHHHhc-CC-cEEEEEeccc
Confidence            555567899999998 44 9999999865

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=94.50  E-value=0.51  Score=46.11  Aligned_cols=53  Identities=19%  Similarity=0.390  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCC
Q 016644           42 QSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDL  112 (385)
Q Consensus        42 ~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL  112 (385)
                      .++..+|++++..+..     .+.+++|+|+=||+|+-       +++++.+.-     ..| .+|.++|.
T Consensus       117 ~~l~~~i~~ai~~L~~-----~g~pvrIlDIAaG~GRY-------vlDal~~~~-----~~~-~~i~LrDy  169 (311)
T PF12147_consen  117 VHLEELIRQAIARLRE-----QGRPVRILDIAAGHGRY-------VLDALEKHP-----ERP-DSILLRDY  169 (311)
T ss_pred             HHHHHHHHHHHHHHHh-----cCCceEEEEeccCCcHH-------HHHHHHhCC-----CCC-ceEEEEeC
Confidence            4566777777777743     46899999999999985       333333321     113 68899887

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=94.31  E-value=0.047  Score=52.74  Aligned_cols=142  Identities=11%  Similarity=0.072  Sum_probs=75.4

Q ss_pred             hhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHH----------
Q 016644           16 EMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVD----------   85 (385)
Q Consensus        16 ~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~----------   85 (385)
                      +..+.+.|=.-..+|.+|-..+..++..+...+.       .      .+..+|+|+|||+|..|..+..          
T Consensus         6 ~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~-------~------~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~   72 (272)
T PRK00274          6 RELLERYGHRAKKSLGQNFLIDENILDKIVDAAG-------P------QPGDNVLEIGPGLGALTEPLLERAAKVTAVEI   72 (272)
T ss_pred             HHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC-------C------CCcCeEEEeCCCccHHHHHHHHhCCcEEEEEC
Confidence            3445554433345677766666665544433331       1      2346899999999999998887          


Q ss_pred             --HHHHHHHHHHHhcCCCCCceeEEecCCCCCchHH-----HHhcCCCCCCc--hhHhhhcCcCCceeeccccCcccccc
Q 016644           86 --VIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNT-----LFQLLPPIGSS--MEECLASDTHRSYFAAGVPGSFYRRL  156 (385)
Q Consensus        86 --~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~-----lF~~l~~~~~~--~~~~~~~~~~~~~f~~~vpgSFy~rL  156 (385)
                        ..++.++++..     .+.++++..|...-++..     +..++|-..+.  ..............+..+...|.+||
T Consensus        73 d~~~~~~~~~~~~-----~~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl  147 (272)
T PRK00274         73 DRDLAPILAETFA-----EDNLTIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERI  147 (272)
T ss_pred             CHHHHHHHHHhhc-----cCceEEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHH
Confidence              34555554432     135777777765444433     23344421111  12222211111223456778888888


Q ss_pred             -CCCCcccEEEccccccccc
Q 016644          157 -FPTRSIDFFHSAFSLHWLS  175 (385)
Q Consensus       157 -fP~~Svd~~~Ss~alHWLS  175 (385)
                       .++++-+..--|.-.++..
T Consensus       148 ~a~pg~~~y~~lSv~~~~~~  167 (272)
T PRK00274        148 VAKPGSKAYGRLSVLVQYYC  167 (272)
T ss_pred             cCCCCCccccHHHHHHHHHc
Confidence             4556655543333334333

>PLN02672 methionine S-methyltransferase

Probab=94.16  E-value=0.097  Score=59.54  Aligned_cols=43  Identities=19%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL  124 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l  124 (385)
                      .+|+|+|||+|..++.+....               |..+|+..|+-..-.....+++
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~---------------~~~~v~avDis~~Al~~A~~Na  162 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKW---------------LPSKVYGLDINPRAVKVAWINL  162 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHH
Confidence            589999999999999886322               4568999998655554444433

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=93.48  E-value=0.65  Score=43.84  Aligned_cols=118  Identities=9%  Similarity=0.053  Sum_probs=68.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchh-HhhhcCcCCc-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSME-ECLASDTHRS-  142 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~-~~~~~~~~~~-  142 (385)
                      +..+|++.|||.|.+...+.+                 -..+|+-.|+...=-...|+...-...-.+ ...+...... 
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~-----------------~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i  105 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLS-----------------KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI  105 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHh-----------------CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence            346999999999999998862                 236788888876555555553221000000 0000000011 


Q ss_pred             eeeccccCccccccC---CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          143 YFAAGVPGSFYRRLF---PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       143 ~f~~~vpgSFy~rLf---P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      -+.   -|+|++-=.   .-+.+|+|+=..+|+=|   |+.                      ....|.++         
T Consensus       106 ~~~---~gD~f~l~~~~~~~~~fD~VyDra~~~Al---pp~----------------------~R~~Y~~~---------  148 (226)
T PRK13256        106 EIY---VADIFNLPKIANNLPVFDIWYDRGAYIAL---PND----------------------LRTNYAKM---------  148 (226)
T ss_pred             EEE---EccCcCCCccccccCCcCeeeeehhHhcC---CHH----------------------HHHHHHHH---------
Confidence            122   236665110   12467888877777764   333                      34556655         


Q ss_pred             HHHHhhhccCCeEEEEecc
Q 016644          220 GARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g  238 (385)
                        -++-|+|||++++.++-
T Consensus       149 --l~~lL~pgg~llll~~~  165 (226)
T PRK13256        149 --MLEVCSNNTQILLLVME  165 (226)
T ss_pred             --HHHHhCCCcEEEEEEEe
Confidence              67789999999999874

>PHA03412 putative methyltransferase; Provisional

Probab=93.16  E-value=0.058  Score=51.22  Aligned_cols=72  Identities=11%  Similarity=0.106  Sum_probs=43.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+...+.            ..+..+|+.-|+-.+-....-+.++.               .-+.
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~------------~~~~~~V~aVEID~~Al~~Ar~n~~~---------------~~~~  102 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMM------------YAKPREIVCVELNHTYYKLGKRIVPE---------------ATWI  102 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcc------------cCCCcEEEEEECCHHHHHHHHhhccC---------------CEEE
Confidence            46999999999998888764331            01246788888855444443333321               1122


Q ss_pred             ccccCccccccCCCCcccEEEcc
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSA  168 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss  168 (385)
                         -++|.... +++++|+|+|+
T Consensus       103 ---~~D~~~~~-~~~~FDlIIsN  121 (241)
T PHA03412        103 ---NADALTTE-FDTLFDMAISN  121 (241)
T ss_pred             ---Ecchhccc-ccCCccEEEEC
Confidence               23554332 35789999996

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.00  E-value=0.093  Score=49.52  Aligned_cols=63  Identities=14%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHH
Q 016644          215 LAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEV  294 (385)
Q Consensus       215 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~  294 (385)
                      +..++-.-+.-|+|||.|.++.=--..       ..++.    +..                    .--|..+..=|++.
T Consensus       204 Le~~~~~aa~~L~~gGlfaFSvE~l~~-------~~~f~----l~p--------------------s~RyAH~~~YVr~~  252 (287)
T COG4976         204 LEGLFAGAAGLLAPGGLFAFSVETLPD-------DGGFV----LGP--------------------SQRYAHSESYVRAL  252 (287)
T ss_pred             hhhHHHHHHHhcCCCceEEEEecccCC-------CCCee----cch--------------------hhhhccchHHHHHH
Confidence            334445678999999999888722110       00110    111                    12366777778999


Q ss_pred             HHhcCceEecEEEEE
Q 016644          295 VEANGSFVINKLEVF  309 (385)
Q Consensus       295 le~~gsF~i~~le~~  309 (385)
                      ++..| |++..++..
T Consensus       253 l~~~G-l~~i~~~~t  266 (287)
T COG4976         253 LAASG-LEVIAIEDT  266 (287)
T ss_pred             HHhcC-ceEEEeecc
Confidence            99999 888777754

>PRK01581 speE spermidine synthase; Validated

Probab=92.94  E-value=0.25  Score=49.88  Aligned_cols=36  Identities=19%  Similarity=0.093  Sum_probs=24.4

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      +.+-+|+++|||+|.....++        +.       ++..+|...|+-.
T Consensus       149 ~~PkrVLIIGgGdG~tlrelL--------k~-------~~v~~It~VEIDp  184 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVL--------KY-------ETVLHVDLVDLDG  184 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHH--------hc-------CCCCeEEEEeCCH
Confidence            356799999999998443332        11       1346788888854

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=92.87  E-value=0.15  Score=45.84  Aligned_cols=115  Identities=15%  Similarity=0.111  Sum_probs=56.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|||||+|--++.+...        .       ..-+|+++|++. =...+-.++......      ....-.+-
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~------~~~~v~v~  102 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE-VLELLRRNIELNGSL------LDGRVSVR  102 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S--HHHHHHHHHHTT--------------EEE
T ss_pred             CCceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch-hhHHHHHHHHhcccc------ccccccCc
Confidence            4579999999999888877632        1       246899999975 222222232211000      00001111


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..-++.......+.+.++|+|+.+=++.+=+.                                      +..+++.-.+
T Consensus       103 ~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~--------------------------------------~~~L~~tl~~  144 (173)
T PF10294_consen  103 PLDWGDELDSDLLEPHSFDVILASDVLYDEEL--------------------------------------FEPLVRTLKR  144 (173)
T ss_dssp             E--TTS-HHHHHHS-SSBSEEEEES--S-GGG--------------------------------------HHHHHHHHHH
T ss_pred             EEEecCcccccccccccCCEEEEecccchHHH--------------------------------------HHHHHHHHHH
Confidence            11233322334456678888888877776222                                      2233345567


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      -|+|+|.+++...-|
T Consensus       145 ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  145 LLKPNGKVLLAYKRR  159 (173)
T ss_dssp             HBTT-TTEEEEEE-S
T ss_pred             HhCCCCEEEEEeCEe
Confidence            789999976666555

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=92.66  E-value=1  Score=44.68  Aligned_cols=68  Identities=13%  Similarity=0.216  Sum_probs=40.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|||||+|.=|..+++.+..    ..       ..+..+--|+...--....+.|..           ...+.+=
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~----~~-------~~~~Y~plDIS~~~L~~a~~~L~~-----------~~~p~l~  133 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALER----QK-------KSVDYYALDVSRSELQRTLAELPL-----------GNFSHVR  133 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHh----cC-------CCceEEEEECCHHHHHHHHHhhhh-----------ccCCCeE
Confidence            4568999999999999988876631    11       236777778754333333333431           1123455


Q ss_pred             eccccCcccc
Q 016644          145 AAGVPGSFYR  154 (385)
Q Consensus       145 ~~~vpgSFy~  154 (385)
                      +.++-|+|..
T Consensus       134 v~~l~gdy~~  143 (319)
T TIGR03439       134 CAGLLGTYDD  143 (319)
T ss_pred             EEEEEecHHH
Confidence            5567777644

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=92.45  E-value=0.48  Score=44.75  Aligned_cols=36  Identities=14%  Similarity=0.092  Sum_probs=26.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      ++-+|+|+||++|.-++.+...+              ++.-+|+.-|...
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~--------------~~~g~v~tiD~d~  103 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALAL--------------PEDGRITAIDIDK  103 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhC--------------CCCCEEEEEECCH
Confidence            46789999999999888775322              1346788888743

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=92.38  E-value=0.9  Score=40.60  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=28.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN  115 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N  115 (385)
                      +..+++|+|||.|.-|..+++..              .+.-.|+--||...
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecc--------------cccceEEEEecccc
Confidence            56999999999999988876322              14578999999765

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=91.79  E-value=4.3  Score=39.30  Aligned_cols=56  Identities=11%  Similarity=0.112  Sum_probs=29.5

Q ss_pred             HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      -...|.||..|+++-...+..         .   + -...+.++..++          ..|.+.||.+|+.+.+.  | |
T Consensus       176 l~d~lapGS~L~ish~t~d~~---------p---~-~~~~~~~~~~~~----------~~~~~~Rs~~ei~~~f~--g-~  229 (267)
T PF04672_consen  176 LRDALAPGSYLAISHATDDGA---------P---E-RAEALEAVYAQA----------GSPGRPRSREEIAAFFD--G-L  229 (267)
T ss_dssp             HHCCS-TT-EEEEEEEB-TTS---------H---H-HHHHHHHHHHHC----------CS----B-HHHHHHCCT--T-S
T ss_pred             HHHhCCCCceEEEEecCCCCC---------H---H-HHHHHHHHHHcC----------CCCceecCHHHHHHHcC--C-C
Confidence            357899999999999875311         0   1 123333332222          46999999999999876  4 6


Q ss_pred             Ee
Q 016644          302 VI  303 (385)
Q Consensus       302 ~i  303 (385)
                      ++
T Consensus       230 el  231 (267)
T PF04672_consen  230 EL  231 (267)
T ss_dssp             EE
T ss_pred             cc
Confidence            64

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=91.71  E-value=0.71  Score=50.66  Aligned_cols=114  Identities=11%  Similarity=0.095  Sum_probs=63.0

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      -+|+|+||++|..|+.+...                .--+|+.-|+-..-....-+++...        ..+..+--|+.
T Consensus       540 ~rVLDlf~gtG~~sl~aa~~----------------Ga~~V~~vD~s~~al~~a~~N~~~n--------g~~~~~v~~i~  595 (702)
T PRK11783        540 KDFLNLFAYTGTASVHAALG----------------GAKSTTTVDMSNTYLEWAERNFALN--------GLSGRQHRLIQ  595 (702)
T ss_pred             CeEEEcCCCCCHHHHHHHHC----------------CCCEEEEEeCCHHHHHHHHHHHHHh--------CCCccceEEEE
Confidence            58999999999999987621                1135888888544333333332110        00000111222


Q ss_pred             cccCccc---cccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          147 GVPGSFY---RRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       147 ~vpgSFy---~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                         ++.+   .++  .+++|+|++.         |+.+...      +       ....+     ....+|+...+..-.
T Consensus       596 ---~D~~~~l~~~--~~~fDlIilD---------PP~f~~~------~-------~~~~~-----~~~~~~y~~l~~~a~  643 (702)
T PRK11783        596 ---ADCLAWLKEA--REQFDLIFID---------PPTFSNS------K-------RMEDS-----FDVQRDHVALIKDAK  643 (702)
T ss_pred             ---ccHHHHHHHc--CCCcCEEEEC---------CCCCCCC------C-------ccchh-----hhHHHHHHHHHHHHH
Confidence               2432   232  5689999886         4433210      0       00001     123456777777778


Q ss_pred             hhhccCCeEEEEe
Q 016644          224 KEMKRCGSMFLVC  236 (385)
Q Consensus       224 ~EL~pGG~lvl~~  236 (385)
                      +-|+|||.++++.
T Consensus       644 ~lL~~gG~l~~~~  656 (702)
T PRK11783        644 RLLRPGGTLYFSN  656 (702)
T ss_pred             HHcCCCCEEEEEe
Confidence            8999999998765

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=91.51  E-value=1.1  Score=42.84  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhhhccCCeEEEEe
Q 016644          213 TDLAAFLGARSKEMKRCGSMFLVC  236 (385)
Q Consensus       213 ~D~~~FL~~Ra~EL~pGG~lvl~~  236 (385)
                      +.+.+|++.-++-|.|||+||+.=
T Consensus       186 ~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  186 DGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             HHHHHHHHHHHHhhCcCcEEEEcC
Confidence            358899999999999999998864

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=90.85  E-value=1.8  Score=44.18  Aligned_cols=27  Identities=4%  Similarity=-0.092  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHhhhccCCeEEEEe
Q 016644          210 QFQTDLAAFLGARSKEMKRCGSMFLVC  236 (385)
Q Consensus       210 q~~~D~~~FL~~Ra~EL~pGG~lvl~~  236 (385)
                      ...+++..++..-.+-|+|||.|+++.
T Consensus       313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        313 GACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            345677788888889999999998655

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=90.55  E-value=1.2  Score=43.17  Aligned_cols=103  Identities=19%  Similarity=0.272  Sum_probs=55.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchh--HhhhcCcCCc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSME--ECLASDTHRS  142 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~--~~~~~~~~~~  142 (385)
                      ++++|--.|||||-=.-.+.=.+    .+....  ..+..++|+-.|+   |=..|-+.-...+...+  ......--.+
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l----~e~~~~--~~~~~~~I~AtDI---d~~~L~~A~~G~Y~~~~~~~~~~~~~~~r  166 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLL----LEALGK--LAGFRVKILATDI---DLSVLEKARAGIYPSRELLRGLPPELLRR  166 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHH----HHHhcc--ccCCceEEEEEEC---CHHHHHHHhcCCCChhHhhccCCHHHHhh
Confidence            58999999999997555443222    233311  1234699999998   55555443222111000  0000001135


Q ss_pred             eeeccccCccc-------------ccc----CCCCcccEEEcccccccccC
Q 016644          143 YFAAGVPGSFY-------------RRL----FPTRSIDFFHSAFSLHWLSQ  176 (385)
Q Consensus       143 ~f~~~vpgSFy-------------~rL----fP~~Svd~~~Ss~alHWLS~  176 (385)
                      ||.-+.+|+|-             ..|    +..+-+|+|||=+.|=.+++
T Consensus       167 yF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~  217 (268)
T COG1352         167 YFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE  217 (268)
T ss_pred             hEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH
Confidence            66666555532             112    14456888888887777655

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=90.54  E-value=0.59  Score=45.68  Aligned_cols=44  Identities=16%  Similarity=0.285  Sum_probs=26.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN  115 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N  115 (385)
                      .+++|..-|||||-=.-.+.=    .+.+....   ..-.++|+-.|+-.+
T Consensus       115 ~~irIWSAgCStGEEpYSlAm----ll~e~~~~---~~~~~~I~atDIs~~  158 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAM----TLADTLGT---APGRWKVFASDIDTE  158 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHH----HHHHhhcc---cCCCcEEEEEECCHH
Confidence            469999999999964433321    12222211   112589999999543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=90.51  E-value=0.73  Score=45.92  Aligned_cols=103  Identities=17%  Similarity=0.288  Sum_probs=60.3

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      --+|+|.|||||..|+.....=               . ..|+--|     ++.+...-.       +..+.+....+ +
T Consensus        61 dK~VlDVGcGtGILS~F~akAG---------------A-~~V~aVe-----~S~ia~~a~-------~iv~~N~~~~i-i  111 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAG---------------A-RKVYAVE-----ASSIADFAR-------KIVKDNGLEDV-I  111 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhC---------------c-ceEEEEe-----chHHHHHHH-------HHHHhcCccce-E
Confidence            4689999999999998876321               1 2333222     222221100       00111112222 2


Q ss_pred             ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      -.+.|. -+.+ +|-..||+++|-|-=+||-.  +                                 .=|.+.|-+|-+
T Consensus       112 ~vi~gk-vEdi~LP~eKVDiIvSEWMGy~Ll~--E---------------------------------sMldsVl~ARdk  155 (346)
T KOG1499|consen  112 TVIKGK-VEDIELPVEKVDIIVSEWMGYFLLY--E---------------------------------SMLDSVLYARDK  155 (346)
T ss_pred             EEeecc-eEEEecCccceeEEeehhhhHHHHH--h---------------------------------hhhhhhhhhhhh
Confidence            234444 3444 88899999999988888732  1                                 114556678999


Q ss_pred             hhccCCeEE
Q 016644          225 EMKRCGSMF  233 (385)
Q Consensus       225 EL~pGG~lv  233 (385)
                      =|+|||.++
T Consensus       156 wL~~~G~i~  164 (346)
T KOG1499|consen  156 WLKEGGLIY  164 (346)
T ss_pred             ccCCCceEc
Confidence            999999984

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=89.96  E-value=0.48  Score=43.72  Aligned_cols=44  Identities=16%  Similarity=0.261  Sum_probs=23.7

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP  113 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp  113 (385)
                      +++++|...|||||-=.-.+.=    .+.+....  ...-.++++-+|+-
T Consensus        30 ~~~lrIWSagCStGeE~YSlAm----ll~e~~~~--~~~~~~~I~atDi~   73 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAM----LLLELLPG--ALGWDFRILATDIS   73 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHH----HHHHHH-S---TT-SEEEEEEES-
T ss_pred             CCCeEEEECCCCCChhHHHHHH----HHHHHhcc--cCCCceEEEEEECC
Confidence            3689999999999964443321    12221111  11226999999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=89.88  E-value=2.8  Score=38.38  Aligned_cols=144  Identities=19%  Similarity=0.218  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh
Q 016644           43 SMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ  122 (385)
Q Consensus        43 ~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~  122 (385)
                      .++..||+....+..      ..+--.+|+|||||--|-.+.+.+.              |....+..|+  |-.. +-.
T Consensus        27 lLlDaLekd~~eL~~------~~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDi--Np~A-~~~   83 (209)
T KOG3191|consen   27 LLLDALEKDAAELKG------HNPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDI--NPEA-LEA   83 (209)
T ss_pred             HHHHHHHHHHHHHhh------cCceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecC--CHHH-HHH
Confidence            467778887777753      1356679999999998877776552              4466777887  3221 111


Q ss_pred             cCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHH
Q 016644          123 LLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEH  202 (385)
Q Consensus       123 ~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~  202 (385)
                      ++..           .+.+.+-+-.|-.++..-|-+ +++|+..=         .|+.+.....+      |    ...-
T Consensus        84 Tl~T-----------A~~n~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~~~------i----~~~~  132 (209)
T KOG3191|consen   84 TLET-----------ARCNRVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSDEE------I----GDEG  132 (209)
T ss_pred             HHHH-----------HHhcCCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCccc------c----hhHH
Confidence            1110           001111122344477766766 88887543         24443221110      0    0111


Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHhhhccCCeEEEEeccCC
Q 016644          203 TANAYK--KQFQTDLAAFLGARSKEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       203 v~~ay~--~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~  240 (385)
                      ...||+  +--+.=..+||..--.-|.|-|.+.+...-++
T Consensus       133 i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  133 IASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             HHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence            345555  44555566788888888999999988887663

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=89.54  E-value=0.86  Score=43.04  Aligned_cols=114  Identities=15%  Similarity=0.212  Sum_probs=67.1

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      -.++|+|||.|.-.+.+.        ++       .|+.-++--+.-.+=...+-+.+..           ..-+++.+.
T Consensus        50 pi~lEIGfG~G~~l~~~A--------~~-------nP~~nfiGiEi~~~~v~~~l~k~~~-----------~~l~Nlri~  103 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMA--------KK-------NPEKNFLGIEIRVPGVAKALKKIKE-----------LGLKNLRLL  103 (227)
T ss_pred             cEEEEECCCCCHHHHHHH--------HH-------CCCCCEEEEEEehHHHHHHHHHHHH-----------cCCCcEEEE
Confidence            467999999999766654        22       2666666555533222222222210           111133322


Q ss_pred             -cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          147 -GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       147 -~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                       .=.--+.+.++|++|+|=++=++.==|-.+-.           +|.+|.    .               ..||..-++-
T Consensus       104 ~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH-----------~KRRl~----~---------------~~fl~~~a~~  153 (227)
T COG0220         104 CGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRH-----------HKRRLT----Q---------------PEFLKLYARK  153 (227)
T ss_pred             cCCHHHHHHhcCCCCCeeEEEEECCCCCCCccc-----------cccccC----C---------------HHHHHHHHHH
Confidence             22234567788888999999888777733322           233331    2               2466677999


Q ss_pred             hccCCeEEEEe
Q 016644          226 MKRCGSMFLVC  236 (385)
Q Consensus       226 L~pGG~lvl~~  236 (385)
                      |+|||.+.+.+
T Consensus       154 Lk~gG~l~~aT  164 (227)
T COG0220         154 LKPGGVLHFAT  164 (227)
T ss_pred             ccCCCEEEEEe
Confidence            99999997765

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=88.87  E-value=0.67  Score=44.55  Aligned_cols=82  Identities=23%  Similarity=0.291  Sum_probs=55.6

Q ss_pred             CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccC
Q 016644          160 RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       160 ~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      ...|.+.|+.+|-=.++-+..                                  +.+=|++-+.-|||||.|++.....
T Consensus       157 ~~~D~v~s~fcLE~a~~d~~~----------------------------------y~~al~ni~~lLkpGG~Lil~~~l~  202 (256)
T PF01234_consen  157 PKFDCVISSFCLESACKDLDE----------------------------------YRRALRNISSLLKPGGHLILAGVLG  202 (256)
T ss_dssp             SSEEEEEEESSHHHH-SSHHH----------------------------------HHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             cchhhhhhhHHHHHHcCCHHH----------------------------------HHHHHHHHHHHcCCCcEEEEEEEcC
Confidence            369999999999877664432                                  2333566789999999999988654


Q ss_pred             CCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEE
Q 016644          240 TSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLE  307 (385)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le  307 (385)
                      .           +.|.          +  |        .-.+|...-+.+.|+++|+++| |+|...+
T Consensus       203 ~-----------t~Y~----------v--G--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~  238 (256)
T PF01234_consen  203 S-----------TYYM----------V--G--------GHKFPCLPLNEEFVREALEEAG-FDIEDLE  238 (256)
T ss_dssp             ------------SEEE----------E--T--------TEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred             c-----------eeEE----------E--C--------CEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence            2           1110          0  1        1236888889999999999999 9998888

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=88.61  E-value=0.46  Score=47.18  Aligned_cols=80  Identities=8%  Similarity=0.022  Sum_probs=42.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ...+|+|+|||+|.-..++..        +.       +..+++..|+-..-....-+++....         .-...+ 
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~--------~~-------~~~~~~atDId~~Al~~A~~Nv~~Np---------~l~~~I~  169 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGV--------HE-------YGWRFVGSDIDPQALASAQAIISANP---------GLNGAIR  169 (321)
T ss_pred             CCceEEEecCCccHHHHHHHh--------hC-------CCCEEEEEeCCHHHHHHHHHHHHhcc---------CCcCcEE
Confidence            468999999999965555531        11       34678888883222222222221100         000112 


Q ss_pred             -eeccccCcccccc-CCCCcccEEEcc
Q 016644          144 -FAAGVPGSFYRRL-FPTRSIDFFHSA  168 (385)
Q Consensus       144 -f~~~vpgSFy~rL-fP~~Svd~~~Ss  168 (385)
                       .....++..+..+ .+.+.+|+++|+
T Consensus       170 ~~~~~~~~~i~~~i~~~~~~fDlivcN  196 (321)
T PRK11727        170 LRLQKDSKAIFKGIIHKNERFDATLCN  196 (321)
T ss_pred             EEEccchhhhhhcccccCCceEEEEeC
Confidence             1223344445444 478899999996

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=87.19  E-value=1.8  Score=43.10  Aligned_cols=153  Identities=16%  Similarity=0.161  Sum_probs=82.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      --.|+|.|||+|..|+..++.=                --.||.-. .+++-.-.-+++...           .. .--+
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAG----------------A~~vYAvE-AS~MAqyA~~Lv~~N-----------~~-~~rI  228 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAG----------------AKKVYAVE-ASEMAQYARKLVASN-----------NL-ADRI  228 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhC----------------cceEEEEe-hhHHHHHHHHHHhcC-----------Cc-cceE
Confidence            3567999999999999876321                12333222 233333333333221           00 0114


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+||- -+.+-.+..+|+++|-         |-.-                          ----++=++++|.+| +=
T Consensus       229 tVI~GK-iEdieLPEk~DviISE---------PMG~--------------------------mL~NERMLEsYl~Ar-k~  271 (517)
T KOG1500|consen  229 TVIPGK-IEDIELPEKVDVIISE---------PMGY--------------------------MLVNERMLESYLHAR-KW  271 (517)
T ss_pred             EEccCc-cccccCchhccEEEec---------cchh--------------------------hhhhHHHHHHHHHHH-hh
Confidence            468888 7788777888988762         3110                          001134578889999 99


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCC------CccchH------HHHHHHHHHHHHcCCccccccccccccccc
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGG------PGILFG------THFQDAWNDLVQEGLITGEKRDSFNIPVYA  285 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~------~~~~~~------~~l~~al~~mv~eG~i~~e~~d~f~~P~y~  285 (385)
                      |+|.|.|+=+ .|+-...|-.+..      ..-+||      ..--..|..-+-+|.+.+--+|.|.+.+..
T Consensus       272 l~P~GkMfPT-~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~Rilm  342 (517)
T KOG1500|consen  272 LKPNGKMFPT-VGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILM  342 (517)
T ss_pred             cCCCCcccCc-ccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceee
Confidence            9999999544 3443222222110      000111      001122333344566777777888777654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=87.10  E-value=0.61  Score=45.78  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHH
Q 016644           41 AQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        41 ~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~   84 (385)
                      -..++.+|++..           .+.-+|+|+|||||-+++...
T Consensus       148 T~lcl~~l~~~~-----------~~g~~vLDvG~GSGILaiaA~  180 (295)
T PF06325_consen  148 TRLCLELLEKYV-----------KPGKRVLDVGCGSGILAIAAA  180 (295)
T ss_dssp             HHHHHHHHHHHS-----------STTSEEEEES-TTSHHHHHHH
T ss_pred             HHHHHHHHHHhc-----------cCCCEEEEeCCcHHHHHHHHH
Confidence            345666666542           123599999999999998875

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=86.90  E-value=0.61  Score=44.07  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=27.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchH
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFN  118 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn  118 (385)
                      +..+|+|+|||+|..|..+.+.                .--+|+--|.-.++..
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~----------------ga~~v~avD~~~~~l~  112 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK----------------GAKEVYGVDVGYNQLA  112 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc----------------CCCEEEEEeCCHHHHH
Confidence            3468999999999999877621                1257888888665444

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=86.38  E-value=1.1  Score=38.56  Aligned_cols=55  Identities=16%  Similarity=0.241  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCC
Q 016644           42 QSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDL  112 (385)
Q Consensus        42 ~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL  112 (385)
                      .++..++...++....     ..++.+|+|+|||.|..|+.+...+ ..   .       .+..+|+--|.
T Consensus         7 ~~~~~~i~~~~~~~~~-----~~~~~~vvD~GsG~GyLs~~La~~l-~~---~-------~~~~~v~~iD~   61 (141)
T PF13679_consen    7 ERMAELIDSLCDSVGE-----SKRCITVVDLGSGKGYLSRALAHLL-CN---S-------SPNLRVLGIDC   61 (141)
T ss_pred             HHHHHHHHHHHHHhhc-----cCCCCEEEEeCCChhHHHHHHHHHH-Hh---c-------CCCCeEEEEEC
Confidence            4455555555544211     2357899999999999999987422 11   1       14577787776

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=86.20  E-value=1.1  Score=44.13  Aligned_cols=19  Identities=32%  Similarity=0.417  Sum_probs=16.8

Q ss_pred             ceEEeeeCCCCCcchHHHH
Q 016644           66 PFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~   84 (385)
                      ..+|+|+|||+|..++.+.
T Consensus       174 ~~~VLDl~cG~G~~sl~la  192 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCA  192 (315)
T ss_pred             CCEEEEccCCCCHHHHHHH
Confidence            4689999999999998876

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=85.86  E-value=8.6  Score=36.90  Aligned_cols=125  Identities=15%  Similarity=0.181  Sum_probs=76.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh-cCCCCCCchhHhhhcCcCCcee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ-LLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~-~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      -.+|+|.|.|||..|..+...+              .|+-+|+--|.= -||-...+ ++..+  .         ..+. 
T Consensus        95 g~rVlEAGtGSG~lt~~La~~v--------------g~~G~v~tyE~r-~d~~k~A~~Nl~~~--~---------l~d~-  147 (256)
T COG2519          95 GSRVLEAGTGSGALTAYLARAV--------------GPEGHVTTYEIR-EDFAKTARENLSEF--G---------LGDR-  147 (256)
T ss_pred             CCEEEEcccCchHHHHHHHHhh--------------CCCceEEEEEec-HHHHHHHHHHHHHh--c---------cccc-
Confidence            3799999999999999886433              144555554543 26655433 33221  0         0110 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +.-.-|+..+-.++. .+|.+|-        +.|.+-                                   ..|..-++
T Consensus       148 v~~~~~Dv~~~~~~~-~vDav~L--------Dmp~PW-----------------------------------~~le~~~~  183 (256)
T COG2519         148 VTLKLGDVREGIDEE-DVDAVFL--------DLPDPW-----------------------------------NVLEHVSD  183 (256)
T ss_pred             eEEEecccccccccc-ccCEEEE--------cCCChH-----------------------------------HHHHHHHH
Confidence            111116777777777 8888763        445432                                   23355789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccc
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRD  277 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d  277 (385)
                      .|+|||++++..+..                +.+...+..|-+.|.++.+..+
T Consensus       184 ~Lkpgg~~~~y~P~v----------------eQv~kt~~~l~~~g~~~ie~~E  220 (256)
T COG2519         184 ALKPGGVVVVYSPTV----------------EQVEKTVEALRERGFVDIEAVE  220 (256)
T ss_pred             HhCCCcEEEEEcCCH----------------HHHHHHHHHHHhcCccchhhhe
Confidence            999999998887554                3466666667666776655443

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=84.84  E-value=2.1  Score=41.98  Aligned_cols=20  Identities=20%  Similarity=0.272  Sum_probs=17.5

Q ss_pred             ceEEeeeCCCCCcchHHHHH
Q 016644           66 PFALADLGCSCGNNTLYIVD   85 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~   85 (385)
                      .-+|+|+|||+|..|..++.
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~   56 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQ   56 (294)
T ss_pred             cCEEEEecCchHHHHHHHHH
Confidence            46899999999999988875

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=84.38  E-value=1.9  Score=44.86  Aligned_cols=22  Identities=14%  Similarity=0.276  Sum_probs=16.8

Q ss_pred             ceEEeeeCCCCCcchHHHHHHH
Q 016644           66 PFALADLGCSCGNNTLYIVDVI   87 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~i   87 (385)
                      ..+|+|+|||+|+.+...++..
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~  208 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAG  208 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTT
T ss_pred             ceEEEEeCCCccHHHHHHHHHH
Confidence            5789999999999998887543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=84.04  E-value=0.59  Score=42.88  Aligned_cols=20  Identities=20%  Similarity=0.149  Sum_probs=16.6

Q ss_pred             CceEEeeeCCCCCcchHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~   84 (385)
                      .--+|+|+|||||..++...
T Consensus        45 ~g~~V~DlG~GTG~La~ga~   64 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAA   64 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHH
Confidence            34679999999999998764

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=83.96  E-value=2.9  Score=39.91  Aligned_cols=20  Identities=15%  Similarity=0.067  Sum_probs=17.5

Q ss_pred             ceEEeeeCCCCCcchHHHHH
Q 016644           66 PFALADLGCSCGNNTLYIVD   85 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~   85 (385)
                      .-+|+|+|||+|..|..+..
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~   49 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAK   49 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHH
Confidence            46899999999999998873

>TIGR00755 ksgA dimethyladenosine transferase

Probab=83.03  E-value=1.4  Score=41.90  Aligned_cols=21  Identities=14%  Similarity=0.078  Sum_probs=17.8

Q ss_pred             CceEEeeeCCCCCcchHHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIVD   85 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~   85 (385)
                      +.-+|+|+|||+|..|..+..
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~   49 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLK   49 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHH
Confidence            347899999999999988863

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=82.57  E-value=8.9  Score=40.15  Aligned_cols=125  Identities=10%  Similarity=0.090  Sum_probs=67.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|++||.|.=|..+.+.+        .      ..-.|+-||.-.+-...|-.++..+           ...++-
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l--------~------~~g~lvA~D~~~~R~~~L~~nl~r~-----------G~~nv~  167 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALM--------N------NQGAIVANEYSASRVKVLHANISRC-----------GVSNVA  167 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHc--------C------CCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCeEE
Confidence            34789999999999998886433        1      2347888998665566665555421           112221


Q ss_pred             ec-cccCccccccCCCCcccEEE----cccccccccCCchhhhcccccccCCCceEEcCCCHH-HHHHHHHHHHHHHHHH
Q 016644          145 AA-GVPGSFYRRLFPTRSIDFFH----SAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEH-TANAYKKQFQTDLAAF  218 (385)
Q Consensus       145 ~~-~vpgSFy~rLfP~~Svd~~~----Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~q~~~D~~~F  218 (385)
                      +. .-+.. +...+| +.+|.|.    ||-.=.|- +.|.....               -+++ +.+.-..|     ..+
T Consensus       168 v~~~D~~~-~~~~~~-~~fD~ILvDaPCSG~G~~r-k~p~~~~~---------------~s~~~v~~l~~lQ-----~~i  224 (470)
T PRK11933        168 LTHFDGRV-FGAALP-ETFDAILLDAPCSGEGTVR-KDPDALKN---------------WSPESNLEIAATQ-----REL  224 (470)
T ss_pred             EEeCchhh-hhhhch-hhcCeEEEcCCCCCCcccc-cCHHHhhh---------------CCHHHHHHHHHHH-----HHH
Confidence            11 11111 112222 3566665    33333332 22333211               1223 33322223     567


Q ss_pred             HHHHHhhhccCCeEEEEec
Q 016644          219 LGARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       219 L~~Ra~EL~pGG~lvl~~~  237 (385)
                      |..-++-|+|||+||-++-
T Consensus       225 L~~A~~~LkpGG~LVYSTC  243 (470)
T PRK11933        225 IESAFHALKPGGTLVYSTC  243 (470)
T ss_pred             HHHHHHHcCCCcEEEEECC
Confidence            8888899999999977663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	385
3b5i_A	374	Crystal Structure Of Indole-3-Acetic Acid Methyltra		1e-163
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		1e-49
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		4e-46
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		1e-44

>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374

Iteration: 1
 Score =  571 bits (1471), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 270/376 (71%), Positives = 319/376 (84%), Gaps = 9/376 (2%)
Query: 14  KLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQL---MEPPSETIPFALA 70
           KLE +LSMKGG G+ SYANNS AQA+HA+SMLHLL ETL+N+ L     PP    PF   
Sbjct: 2   KLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPP----PFTAV 57
Query: 71  DLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSS 130
           DLGCS G NT++I+D I+KHISKR++A+G +PPEF+AFFSDLPSNDFNTLFQLLPP+ S+
Sbjct: 58  DLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSN 117
Query: 131 --MEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMA 188
             MEECLA+D +RSYF AGVPGSFYRRLFP R+IDFFHSAFSLHWLSQVPES  D+RS A
Sbjct: 118 TCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAA 177
Query: 189 YNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQG 248
           YN+G+V+IHGA E T  AYK+QFQ DLA FL AR+ E+KR G+MFLVCLGRTS DPTDQG
Sbjct: 178 YNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQG 237
Query: 249 GPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEV 308
           G G+LFGTHFQDAW+DLV+EGL+  EKRD FNIPVYA SLQ+FKEVV+ANGSF I+KL V
Sbjct: 238 GAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVV 297
Query: 309 FKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKE 368
           +KGGSPLVV +PDDA+EVG+A A+SCRSVAGVLV+AHIG++LS +LF RVE R + +AK+
Sbjct: 298 YKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRATSHAKD 357
Query: 369 LIEQLQFFHIVASLSF 384
           ++  LQFFHIVASLSF
Sbjct: 358 VLVNLQFFHIVASLSF 373

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 188/380 (49%), Gaps = 40/380 (10%)
Query: 15  LEMILSMKGGNGEASYANNS--QAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADL 72
           +  +L MKGG GE SYA NS  Q Q I   S+   + E      L    + T   A+ADL
Sbjct: 3   VRQVLHMKGGAGENSYAMNSFIQRQVI---SITKPITEAAIT-ALYSGDTVTTRLAIADL 58
Query: 73  GCSCGNNTLYIVDVIIKHISKRYEASGYE-PPEFSAFFSDLPSNDFNTLFQLLPPIGSSM 131
           GCS G N L+ V  +IK + +  +  G E  PE+  F +DLP NDFN +F+ LP      
Sbjct: 59  GCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP------ 112
Query: 132 EECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNK 191
              + +D     F  GVPGSFY RLFP  ++ F HS++SL WLSQVP        +  NK
Sbjct: 113 ---IENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVP------IGIESNK 163
Query: 192 GKVYI-HGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGP 250
           G +Y+ +   +   NAY KQFQ D A FL  R++E+   G M L  LGR S D       
Sbjct: 164 GNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST--E 221
Query: 251 GILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFK 310
             L       A N +V EGLI  EK D FNIP Y  S  E +  +   GSF+I+ +E  +
Sbjct: 222 CCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE 281
Query: 311 GGSPLVVKQPDDAAEV---GQALANSCRSVAGVLVDAHIGDQLSEELFKR-----VERRG 362
                  K  D    V   G  +A   R+VA  L+  H G+ + E++F R     +ER  
Sbjct: 282 IYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341
Query: 363 SCYAKELIEQLQFFHIVASL 382
                   E+ +F +++ SL
Sbjct: 342 K-------EKTKFINVIVSL 354

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 182/368 (49%), Gaps = 41/368 (11%)
Query: 14  KLEMILSMKGGNGEASYANNS--------QAQAIHAQSMLHLLRETLDNIQLMEPPSETI 65
           +L+ +L M GG G+ SYA NS        + + +  Q +  LLR  L NI          
Sbjct: 2   ELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKC------- 54
Query: 66  PFALADLGCSCGNNTLYIVDVIIKHISK--RYEASGYEPPEFSAFFSDLPSNDFNTLFQL 123
              +ADLGC+ G NTL  V  I++ I K  + + +  E P    F +DL  NDFN++F+L
Sbjct: 55  -IKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKL 113
Query: 124 LPPIGSSMEECLASDTHR---SYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPES 180
           LP     +E+    +  R   S     +PGSFY RLFP  S+ F HS + L WLSQVP  
Sbjct: 114 LPSFYRKLEK----ENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSG 169
Query: 181 ALDKRSMAYNKGKVYIHGANE-HTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGR 239
            + +  +  NKG +Y   A+      AY  QF  D   FL   S+E+   G M L C+ +
Sbjct: 170 LVTELGIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICK 229
Query: 240 TSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG 299
              +   +    +L     + A NDLV EG +  EK DSFN+PVY  S +E K +VE  G
Sbjct: 230 -GVELDARNAIDLL-----EMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEG 283
Query: 300 SFVINKLEVFK----GGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELF 355
           SF I  LE FK     G  +     DD     + +A+S R+V   ++ +H G+ +  ++F
Sbjct: 284 SFEILYLETFKVLYDAGFSI-----DDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIF 338
Query: 356 KRVERRGS 363
            R  +  +
Sbjct: 339 HRFAKHAA 346

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 181/376 (48%), Gaps = 45/376 (11%)
Query: 14  KLEMILSMKGGNGEASYANNS-------QAQAIHAQSMLHLLRETLDNIQLMEPPSETIP 66
           +L+ +L M GG G+ SYA NS       + + +  Q +  LLR  L NI           
Sbjct: 2   ELQEVLHMNGGEGDTSYAKNSSYNLFLIRVKPVLEQCIQELLRANLPNINKC-------- 53
Query: 67  FALADLGCSCGNNTLYIVDVIIKHISK--RYEASGYEPPEFSAFFSDLPSNDFNTLFQLL 124
           F + DLGC+ G NT   V  I++ I K  + + +  E P    F +DL  NDFN++F+LL
Sbjct: 54  FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLL 113
Query: 125 PPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDK 184
           P    ++E+        S     +PGSFY RLFP  S+ F HS + LHWLSQVP   + +
Sbjct: 114 PSFYRNLEKENGRKIG-SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172
Query: 185 RSMAYNKGKVYIHGANE-HTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSAD 243
             ++ NKG +Y   A+      AY  QF  D   FL   S+E+   G M L  + +   D
Sbjct: 173 LGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICK--ED 230
Query: 244 PTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI 303
             D      L     + + NDLV EG +  EK DSFN+P+YA S +E K +VE  GSF I
Sbjct: 231 EFDHPNSMDL----LEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEI 286
Query: 304 NKLEVF----------------KGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIG 347
             LE F                +  SP+   +   AA V    A+  RS+   ++ +H G
Sbjct: 287 LYLETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHV----ASVVRSIYEPILASHFG 342
Query: 348 DQLSEELFKRVERRGS 363
           + +  +L  R+ +  +
Sbjct: 343 EAILPDLSHRIAKNAA 358

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	1e-126
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	1e-104
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	1e-101
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score =  367 bits (944), Expect = e-126
 Identities = 268/373 (71%), Positives = 317/373 (84%), Gaps = 3/373 (0%)

Query: 14  KLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLG 73
           KLE +LSMKGG G+ SYANNS AQA+HA+SMLHLL ETL+N+ L    S   PF   DLG
Sbjct: 2   KLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPP-PFTAVDLG 60

Query: 74  CSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPI--GSSM 131
           CS G NT++I+D I+KHISKR++A+G +PPEF+AFFSDLPSNDFNTLFQLLPP+   + M
Sbjct: 61  CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 120

Query: 132 EECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNK 191
           EECLA+D +RSYF AGVPGSFYRRLFP R+IDFFHSAFSLHWLSQVPES  D+RS AYN+
Sbjct: 121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNR 180

Query: 192 GKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPG 251
           G+V+IHGA E T  AYK+QFQ DLA FL AR+ E+KR G+MFLVCLGRTS DPTDQGG G
Sbjct: 181 GRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAG 240

Query: 252 ILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKG 311
           +LFGTHFQDAW+DLV+EGL+  EKRD FNIPVYA SLQ+FKEVV+ANGSF I+KL V+KG
Sbjct: 241 LLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKG 300

Query: 312 GSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIE 371
           GSPLVV +PDDA+EVG+A A+SCRSVAGVLV+AHIG++LS +LF RVE R + +AK+++ 
Sbjct: 301 GSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRATSHAKDVLV 360

Query: 372 QLQFFHIVASLSF 384
            LQFFHIVASLSF
Sbjct: 361 NLQFFHIVASLSF 373

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score =  312 bits (799), Expect = e-104
 Identities = 116/385 (30%), Positives = 177/385 (45%), Gaps = 25/385 (6%)

Query: 14  KLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLG 73
           +L+ +L M GG G+ SYA NS         +  +L + +  +     P+    F + DLG
Sbjct: 2   ELQEVLHMNGGEGDTSYAKNSSYNLF-LIRVKPVLEQCIQELLRANLPNINKCFKVGDLG 60

Query: 74  CSCGNNTLYIVDVIIKHISKRYEA--SGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSM 131
           C+ G NT   V  I++ I K  +   +  E P    F +DL  NDFN++F+LLP    ++
Sbjct: 61  CASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNL 120

Query: 132 EECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNK 191
           E+        S     +PGSFY RLFP  S+ F HS + LHWLSQVP   + +  ++ NK
Sbjct: 121 EK-ENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNK 179

Query: 192 GKVYIHGAN-EHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGP 250
           G +Y   A+      AY  QF  D   FL   S+E+   G M L  + +           
Sbjct: 180 GCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNS-- 237

Query: 251 GILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFK 310
                   + + NDLV EG +  EK DSFN+P+YA S +E K +VE  GSF I  LE F 
Sbjct: 238 ----MDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFN 293

Query: 311 GGSPLVVKQPD------------DAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRV 358
                     D            D       +A+  RS+   ++ +H G+ +  +L  R+
Sbjct: 294 APYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRI 353

Query: 359 ERRGSCYAKELIEQLQFFHIVASLS 383
            +  +   +    +  +  ++ SL+
Sbjct: 354 AKNAAKVLRS--GKGFYDSVIISLA 376

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score =  303 bits (778), Expect = e-101
 Identities = 130/373 (34%), Positives = 176/373 (47%), Gaps = 24/373 (6%)

Query: 14  KLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLG 73
            +  +L MKGG GE SYA NS  Q         +    +    L    + T   A+ADLG
Sbjct: 2   DVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAIT--ALYSGDTVTTRLAIADLG 59

Query: 74  CSCGNNTLYIVDVIIKHISKRYEASGYE-PPEFSAFFSDLPSNDFNTLFQLLPPIGSSME 132
           CS G N L+ V  +IK + +  +  G E  PE+  F +DLP NDFN +F+ LP       
Sbjct: 60  CSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---- 115

Query: 133 ECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKG 192
                D     F  GVPGSFY RLFP  ++ F HS++SL WLSQVP      +   Y   
Sbjct: 116 -----DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMA- 169

Query: 193 KVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGI 252
               +   +   NAY KQFQ D A FL  R++E+   G M L  LGR S D         
Sbjct: 170 ----NTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTEC--C 223

Query: 253 LFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGG 312
           L       A N +V EGLI  EK D FNIP Y  S  E +  +   GSF+I+ +E  +  
Sbjct: 224 LIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIY 283

Query: 313 SPLVVKQPD---DAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKEL 369
                K  D      E G  +A   R+VA  L+  H G+ + E++F R +        + 
Sbjct: 284 WSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSK- 342

Query: 370 IEQLQFFHIVASL 382
            E+ +F +++ SL
Sbjct: 343 -EKTKFINVIVSL 354

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 6e-08
 Identities = 64/398 (16%), Positives = 109/398 (27%), Gaps = 152/398 (38%)

Query: 15  LEMI--LSMKGGNGEASYANNSQAQAIHAQSMLHLLRET------------LDNIQLMEP 60
           LEM+  L  +      S +++S    +   S+   LR              L N+Q    
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---- 254

Query: 61  PSETI-PFALADLGCSCGNNTL------YIVDVII----KHISKRYEASGYEPPE----F 105
            ++    F   +L C      L       + D +      HIS  + +    P E     
Sbjct: 255 NAKAWNAF---NLSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 106 SAF----FSDLPSNDFNTLFQLLPPIGSSME-------------------------ECLA 136
             +      DLP     T  + L  I  S+                            L 
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 137 SDTHRSYFAAGVPGSFYRRL--FPTRSIDFFHSAFSLHWL---SQVPESALD---KRSMA 188
              +R           + RL  FP  S        SL W           ++   K S+ 
Sbjct: 368 PAEYRKM---------FDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 189 ---YNKGKVYIHG---------ANE---HTA--NAYK--KQFQTD----------LAAFL 219
                +  + I            NE   H +  + Y   K F +D            + +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 220 G--ARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQD--------AWN------ 263
           G   ++ E     ++F                  +     F +        AWN      
Sbjct: 478 GHHLKNIEHPERMTLF----------------RMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 264 DLVQEGLITGEKRDSFNIPVYA---SSLQEFKEVVEAN 298
           + +Q+ L   +     N P Y    +++ +F   +E N
Sbjct: 522 NTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	100.0
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	100.0
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	100.0
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.52
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.39
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.25
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.23
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.17
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.15
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.13
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.07
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.06
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.06
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.04
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.02
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.02
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.02
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.01
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.01
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.99
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.98
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.98
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.95
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.94
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.93
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.93
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.92
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.92
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.9
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.89
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.88
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.88
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.86
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.86
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.85
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.84
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.83
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.83
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.83
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.83
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.81
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.8
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.79
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.77
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.77
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.77
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.75
3ocj_A	305	Putative exported protein; structural genomics, PS	98.73
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.73
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.73
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.71
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.7
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.7
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.68
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.68
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.68
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.68
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.67
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.66
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.66
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.65
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.65
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.64
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.63
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.63
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.62
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.62
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.62
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.59
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.59
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.58
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.56
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.56
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.54
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.53
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.53
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.51
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.51
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.5
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.48
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.47
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.45
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.45
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.44
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.44
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.43
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.43
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.4
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.39
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.36
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.34
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.32
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.31
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.3
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.3
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.29
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.28
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.24
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.23
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.21
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.2
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.19
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.17
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.16
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.16
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.16
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.15
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.13
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.08
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.08
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.04
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.04
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.03
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.0
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.96
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.96
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.94
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.94
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.93
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.92
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.91
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.9
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.88
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.87
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.87
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.85
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.84
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.82
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.81
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.79
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.77
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.75
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.75
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.75
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.74
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.72
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.71
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.71
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.69
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.68
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.67
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.67
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.67
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.67
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.66
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.65
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.64
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.64
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.63
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.61
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.6
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.6
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.59
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.57
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.57
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.56
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.55
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.53
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.52
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.51
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.48
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.48
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.47
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.44
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.44
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.44
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.43
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.42
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.41
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.4
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.38
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.36
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.35
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.34
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.34
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.32
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.3
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.3
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.29
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.26
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.24
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.24
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.23
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.21
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.2
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.2
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.19
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.17
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.17
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.16
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.13
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.12
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.1
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.1
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.08
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.04
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.04
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.01
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.99
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.97
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.97
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.96
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.92
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	96.85
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.85
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.83
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.83
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.82
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.78
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.76
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.7
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.7
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	96.67
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.65
2o07_A	304	Spermidine synthase; structural genomics, structur	96.62
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.61
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.59
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.56
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	96.51
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.5
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.41
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.37
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.36
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.26
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.24
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.19
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.16
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.11
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	96.02
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.95
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	95.89
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	95.66
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	95.4
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	95.33
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	95.12
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	95.0
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	94.97
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	94.88
2qm3_A	373	Predicted methyltransferase; putative methyltransf	94.85
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	94.66
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	94.62
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	94.28
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	93.83
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	93.45
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	93.27
3k6r_A	278	Putative transferase PH0793; structural genomics,	93.25
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	93.24
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	93.24
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	93.13
3khk_A	544	Type I restriction-modification system methylation	92.93
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	92.92
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	92.79
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	92.76
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	92.67
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	92.54
3lkd_A	542	Type I restriction-modification system methyltrans	92.5
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	92.26
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	92.23
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	90.72
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	88.88
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	88.72
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	87.43
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	87.18
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	87.14
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	87.03
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	86.96
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	86.28
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	85.05
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	84.93
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	84.65
2zig_A	297	TTHA0409, putative modification methylase; methylt	80.58

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=100.00  E-value=5.9e-96  Score=730.57  Aligned_cols=370  Identities=69%  Similarity=1.142  Sum_probs=304.1

Q ss_pred             cchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHH
Q 016644           13 RKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHIS   92 (385)
Q Consensus        13 ~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~   92 (385)
                      |+++++|||+||+|++||++||.+|++++..++|++++||++++.... ..+++++|||||||+|+||+.+++.||++|+
T Consensus         1 m~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~~~~ai~~l~~~~~-~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~   79 (374)
T 3b5i_A            1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSS-ASPPPFTAVDLGCSSGANTVHIIDFIVKHIS   79 (374)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHTSCCCCS-SSCCCEEEEEETCCSSHHHHHHHHHHHHHHH
T ss_pred             CCcccccCCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhcccc-CCCCceEEEecCCCCChhHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999998876321 0246899999999999999999999999999


Q ss_pred             HHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchh--HhhhcCcCCceeeccccCccccccCCCCcccEEEcccc
Q 016644           93 KRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSME--ECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFS  170 (385)
Q Consensus        93 ~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~--~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~a  170 (385)
                      ++|...+.++|++||+|||||+||||+||++|+.+.+++.  ++.+....++||++|||||||+||||++|+|+|||++|
T Consensus        80 ~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~a  159 (374)
T 3b5i_A           80 KRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFS  159 (374)
T ss_dssp             HHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred             HHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecce
Confidence            9998888888999999999999999999999998755431  33333445689999999999999999999999999999


Q ss_pred             cccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCC
Q 016644          171 LHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGP  250 (385)
Q Consensus       171 lHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~  250 (385)
                      |||||++|+.+.++.+++||||+||+++++|+|.+||++||++||..||++|++||||||+||++++|+++..+..++..
T Consensus       160 LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~  239 (374)
T 3b5i_A          160 LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGA  239 (374)
T ss_dssp             TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHH
T ss_pred             eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987766653322


Q ss_pred             ccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCCCchhhhHHHH
Q 016644          251 GILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQAL  330 (385)
Q Consensus       251 ~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~~d~~~~~~~~  330 (385)
                      +..|++.|.++|++|+.+|+++++++|+|++|+|+||++|++.+|+++|+|+|++++.++++++...+++.|..+.|+.+
T Consensus       240 ~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~~~~~~~~~~~~g~~~  319 (374)
T 3b5i_A          240 GLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPDDASEVGRAF  319 (374)
T ss_dssp             HHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCCCCSSTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCccccccchhHHHHHHH
Confidence            23331579999999999999999999999999999999999999998888999999999987765444455667899999


Q ss_pred             HHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhchhHhhhcccc--eEEEEEEEe
Q 016644          331 ANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQ--FFHIVASLS  383 (385)
Q Consensus       331 a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~--~~~~~~~l~  383 (385)
                      ++++||+.+|++.+|||++|+|+||+||++++++++....++++  +++++++|+
T Consensus       320 a~~~Ra~~e~ll~~hfg~~i~d~lf~ry~~~~~~~~~~~~~~~~~~~~~~~~~l~  374 (374)
T 3b5i_A          320 ASSCRSVAGVLVEAHIGEELSNKLFSRVESRATSHAKDVLVNLQFFHIVASLSFT  374 (374)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTCHHHHTTCCCEEEEEEEEEC
T ss_pred             HHHHHHhccchhHhhccHHHHHHHHHHHHHHHHHhHHHhhhccccceEEEEEEeC
Confidence            99999999999999999999999999999999998543356677  788888774

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=100.00  E-value=2e-95  Score=727.75  Aligned_cols=359  Identities=32%  Similarity=0.535  Sum_probs=299.5

Q ss_pred             cchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHH
Q 016644           13 RKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHIS   92 (385)
Q Consensus        13 ~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~   92 (385)
                      |+++++|||+||+|++||++||. |++++..++|++++||+.++....+...++++|||||||+|+||+++++.||++|+
T Consensus         1 m~~~~~~~M~gg~G~~sY~~nS~-Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~IaDlGCssG~NT~~~v~~ii~~i~   79 (384)
T 2efj_A            1 MELQEVLHMNGGEGDTSYAKNSS-YNLFLIRVKPVLEQCIQELLRANLPNINKCFKVGDLGCASGPNTFSTVRDIVQSID   79 (384)
T ss_dssp             --CTTTCCCCC----CCHHHHCC-TTTTHHHHHHHHHHHHHHHHHTTCTTTTTEEEEEEETCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcccccccCCCCChhhHHHhHH-HHHHHHHHHHHHHHHHHHhhhcccCCcCCceEEEecCCCCCchHHHHHHHHHHHHH
Confidence            67899999999999999999999 99999999999999999998743321123899999999999999999999999999


Q ss_pred             HHHHh--cCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccc
Q 016644           93 KRYEA--SGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFS  170 (385)
Q Consensus        93 ~~~~~--~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~a  170 (385)
                      ++|.+  .+.++|++||||||||+||||+||++|+.+..+.. ...+...++||++|||||||+||||++|+|+|||++|
T Consensus        80 ~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~-~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~a  158 (384)
T 2efj_A           80 KVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE-KENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYC  158 (384)
T ss_dssp             CC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH-HHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESC
T ss_pred             HHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh-hhccCCCCceEEEecchhhhhccCCCCceEEEEecce
Confidence            99876  55568999999999999999999999997543221 1122235689999999999999999999999999999


Q ss_pred             cccccCCchhhhcccccccCCCceEEcCCCHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCC--CCCCC
Q 016644          171 LHWLSQVPESALDKRSMAYNKGKVYIHGANEH-TANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSA--DPTDQ  247 (385)
Q Consensus       171 lHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~--~~~~~  247 (385)
                      |||||++|+.+.++.+++||||+||+++++|+ |.+||++||++||..||++|++||||||+||++++|+++.  .+...
T Consensus       159 LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~  238 (384)
T 2efj_A          159 LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSM  238 (384)
T ss_dssp             TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHH
T ss_pred             eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCcccH
Confidence            99999999999999999999999999999987 9999999999999999999999999999999999999865  44321


Q ss_pred             CCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcc--cCC----C
Q 016644          248 GGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVV--KQP----D  321 (385)
Q Consensus       248 ~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~--~~~----~  321 (385)
                              +.+.++|++|+.+|+|+++++|+|++|+|+||++||+.+|+++|+|+|+++|.++..+....  .+.    .
T Consensus       239 --------~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~~~~~~~~~~~~~~~  310 (384)
T 2efj_A          239 --------DLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRS  310 (384)
T ss_dssp             --------HHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEETTTTCCC--------
T ss_pred             --------HHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecccccccccccccccc
Confidence                    36999999999999999999999999999999999999999999999999999984322100  000    0


Q ss_pred             ------chhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhchhHhhhcccceEEEEEEEe
Q 016644          322 ------DAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLS  383 (385)
Q Consensus       322 ------d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~l~  383 (385)
                            |....|+.+++++||++||+|.+|||++|+|+||+||+++++++  +..++++|++++++|+
T Consensus       311 ~~~~~~d~~~~g~~~a~~iRa~~epll~~hfG~~i~d~lF~ry~~~~~~~--~~~~~~~~~~~~~~L~  376 (384)
T 2efj_A          311 HSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNAAKV--LRSGKGFYDSVIISLA  376 (384)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHH--HHHTCCEEEEEEEEEE
T ss_pred             cccccchHhHhHHHhhhhhHHhhhhhhHHhccHHHHHHHHHHHHHHHHHH--HhhCCCceEEEEEEEE
Confidence                  23578999999999999999999999999999999999999998  3467899999999986

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=100.00  E-value=3.4e-95  Score=720.68  Aligned_cols=350  Identities=37%  Similarity=0.560  Sum_probs=314.3

Q ss_pred             cchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHH
Q 016644           13 RKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHIS   92 (385)
Q Consensus        13 ~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~   92 (385)
                      |+++++|||+||+|++||++||.+|++++..++|++++||+.++....  .+++++|||||||+|+||+++++.||++|+
T Consensus         1 m~~~~~~~m~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~--~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~   78 (359)
T 1m6e_X            1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDT--VTTRLAIADLGCSSGPNALFAVTELIKTVE   78 (359)
T ss_dssp             CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSS--SSSEECCEEESCCSSTTTTTGGGTTHHHHH
T ss_pred             CCcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCceEEEecCCCCCcchHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999876321  357899999999999999999999999999


Q ss_pred             HHHHhcCC-CCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEccccc
Q 016644           93 KRYEASGY-EPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSL  171 (385)
Q Consensus        93 ~~~~~~~~-~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~al  171 (385)
                      ++|.+.+. ++|++||||||||+||||+||++|+.+.       + . .++||++|||||||+||||++|+|+|||++||
T Consensus        79 ~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-------~-~-~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aL  149 (359)
T 1m6e_X           79 ELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-------D-V-DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSL  149 (359)
T ss_dssp             HHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-------S-C-TTCEEEEEEESCSSSCCSCTTCBSCEEEESCT
T ss_pred             HHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-------c-c-CCCEEEEecchhhhhccCCCCceEEEEehhhh
Confidence            99987766 7899999999999999999999999753       1 1 15799999999999999999999999999999


Q ss_pred             ccccCCchhhhcccccccCCCceEEcCCCHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCC
Q 016644          172 HWLSQVPESALDKRSMAYNKGKVYIHGANEH-TANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGP  250 (385)
Q Consensus       172 HWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~  250 (385)
                      ||||++|+.+.+      |||+||+++++|+ |.+||++||++||..||++|++||||||+||++++|+++.++..++ .
T Consensus       150 HWls~~p~~l~~------nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~-~  222 (359)
T 1m6e_X          150 MWLSQVPIGIES------NKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTE-C  222 (359)
T ss_dssp             TBCSSCCSCCCC------CTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTT-T
T ss_pred             hhcccCchhhhc------cCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccc-h
Confidence            999999999876      9999999999988 9999999999999999999999999999999999999988776543 3


Q ss_pred             ccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCC---CchhhhH
Q 016644          251 GILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQP---DDAAEVG  327 (385)
Q Consensus       251 ~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~---~d~~~~~  327 (385)
                      +..| +.|.++|++|+.+|+|+++++|+|++|+|+||++||+++|+++|+|+|+++|.+++.+.....+.   .|....|
T Consensus       223 ~~~~-~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~~~~~~d~~~~~~~~g  301 (359)
T 1m6e_X          223 CLIW-QLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEG  301 (359)
T ss_dssp             STTT-HHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTT
T ss_pred             HHHH-HHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeeccCcccchhhhhhhhhHhH
Confidence            3444 78999999999999999999999999999999999999999999999999999985432211100   0125688


Q ss_pred             HHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhchhHhhhcccceEEEEEEEe
Q 016644          328 QALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLS  383 (385)
Q Consensus       328 ~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~l~  383 (385)
                      +.+++|+||+.+|+|.+|||++|+|+||+||+++++++  ...++++|++++++|+
T Consensus       302 ~~~a~~~Ra~~e~ll~~hfG~~i~d~lf~ry~~~~~~~--~~~~~~~~~~~~~~L~  355 (359)
T 1m6e_X          302 YNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIER--MSKEKTKFINVIVSLI  355 (359)
T ss_dssp             THHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHSSCCEEEEEEEEEE
T ss_pred             hHhhhhhhhhcchhhHHhccHHHHHHHHHHHHHHHHHH--HhhCCCceEEEEEEEE
Confidence            99999999999999999999999999999999999998  3467899999999986

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.56  E-value=2.7e-14  Score=135.16  Aligned_cols=231  Identities=18%  Similarity=0.213  Sum_probs=142.3

Q ss_pred             ccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCC
Q 016644           21 MKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGY  100 (385)
Q Consensus        21 m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~  100 (385)
                      |...-....|++++..|......+...+.       .      .+..+|+|+|||+|..+..+..               
T Consensus        26 ~~~~w~a~~y~~~~~~~~~~~~~l~~~l~-------~------~~~~~vLDiGcG~G~~~~~l~~---------------   77 (279)
T 3ccf_A           26 AKNFWDATLYQDKHSFVWQYGEDLLQLLN-------P------QPGEFILDLGCGTGQLTEKIAQ---------------   77 (279)
T ss_dssp             ---------------CCSSSCCHHHHHHC-------C------CTTCEEEEETCTTSHHHHHHHH---------------
T ss_pred             chhhcCHHHHhhcchHHHHHHHHHHHHhC-------C------CCCCEEEEecCCCCHHHHHHHh---------------
Confidence            43333346788877777654444433221       1      2357999999999999887752               


Q ss_pred             CCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchh
Q 016644          101 EPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPES  180 (385)
Q Consensus       101 ~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~  180 (385)
                        +..+|+..|+........-+.++.               .-|..   +++. .+-+++++|+|+|+.++||+.+.+. 
T Consensus        78 --~~~~v~gvD~s~~~~~~a~~~~~~---------------~~~~~---~d~~-~~~~~~~fD~v~~~~~l~~~~d~~~-  135 (279)
T 3ccf_A           78 --SGAEVLGTDNAATMIEKARQNYPH---------------LHFDV---ADAR-NFRVDKPLDAVFSNAMLHWVKEPEA-  135 (279)
T ss_dssp             --TTCEEEEEESCHHHHHHHHHHCTT---------------SCEEE---CCTT-TCCCSSCEEEEEEESCGGGCSCHHH-
T ss_pred             --CCCeEEEEECCHHHHHHHHhhCCC---------------CEEEE---CChh-hCCcCCCcCEEEEcchhhhCcCHHH-
Confidence              236888889855444433333321               11222   2432 3434689999999999999875333 


Q ss_pred             hhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHH
Q 016644          181 ALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQD  260 (385)
Q Consensus       181 l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~  260 (385)
                                                           +|+.-++-|+|||++++...+..+.             ..+..
T Consensus       136 -------------------------------------~l~~~~~~LkpgG~l~~~~~~~~~~-------------~~~~~  165 (279)
T 3ccf_A          136 -------------------------------------AIASIHQALKSGGRFVAEFGGKGNI-------------KYILE  165 (279)
T ss_dssp             -------------------------------------HHHHHHHHEEEEEEEEEEEECTTTT-------------HHHHH
T ss_pred             -------------------------------------HHHHHHHhcCCCcEEEEEecCCcch-------------HHHHH
Confidence                                                 3355678999999999998775321             12344


Q ss_pred             HHHHHHH-cCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhh
Q 016644          261 AWNDLVQ-EGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAG  339 (385)
Q Consensus       261 al~~mv~-eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~e  339 (385)
                      .+..... .|.-    ......|+++++.+++...+++.| |++..++.+..+..+    +.+    .+.+..|++++..
T Consensus       166 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~----~~~----~~~~~~~l~~~~~  232 (279)
T 3ccf_A          166 ALYNALETLGIH----NPQALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPTTL----AEG----EFGMANWIQMFAS  232 (279)
T ss_dssp             HHHHHHHHHTCC----CGGGGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCEEC----SSG----GGHHHHHHHHHCH
T ss_pred             HHHHHHHhcCCc----cccCcCceeCCCHHHHHHHHHHcC-CEEEEEEEecccccc----cCC----HHHHHHHHHHhhH
Confidence            4444332 2321    234456788999999999999999 999998888643222    211    2467788888877


Q ss_pred             hhHHhhhChHHHHHHHHHHHHHhhch
Q 016644          340 VLVDAHIGDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       340 p~l~~hfg~~i~delf~r~~~~~~~~  365 (385)
                      +++. .++++..+++.+++.+.+...
T Consensus       233 ~~~~-~~~~~~~~~~~~~~~~~~~~~  257 (279)
T 3ccf_A          233 AFLV-GLTPDQQVQLIRKVEATLQDK  257 (279)
T ss_dssp             HHHT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhc-cCCHHHHHHHHHHHHHHHHhh
Confidence            7776 678888888888888887764

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.52  E-value=7.2e-14  Score=129.80  Aligned_cols=227  Identities=12%  Similarity=0.118  Sum_probs=140.9

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644           28 ASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA  107 (385)
Q Consensus        28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv  107 (385)
                      ..|++.+..|.+....+..       .+..      .+..+|+|+|||+|..+..+....               |..++
T Consensus         9 ~~y~~~~~~~~~~~~~l~~-------~~~~------~~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~v   60 (259)
T 2p35_A            9 QQYLKFEDERTRPARDLLA-------QVPL------ERVLNGYDLGCGPGNSTELLTDRY---------------GVNVI   60 (259)
T ss_dssp             GGGBCCCCGGGHHHHHHHT-------TCCC------SCCSSEEEETCTTTHHHHHHHHHH---------------CTTSE
T ss_pred             HHHHHHHHHHHHHHHHHHH-------hcCC------CCCCEEEEecCcCCHHHHHHHHhC---------------CCCEE
Confidence            5788877777765543222       2211      245789999999999998776332               45688


Q ss_pred             EecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhccccc
Q 016644          108 FFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM  187 (385)
Q Consensus       108 ~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~  187 (385)
                      +..|+........-+..+.               --|..   +++.. +.|++++|+|+|+.++||+.+.+         
T Consensus        61 ~~~D~s~~~~~~a~~~~~~---------------~~~~~---~d~~~-~~~~~~fD~v~~~~~l~~~~~~~---------  112 (259)
T 2p35_A           61 TGIDSDDDMLEKAADRLPN---------------TNFGK---ADLAT-WKPAQKADLLYANAVFQWVPDHL---------  112 (259)
T ss_dssp             EEEESCHHHHHHHHHHSTT---------------SEEEE---CCTTT-CCCSSCEEEEEEESCGGGSTTHH---------
T ss_pred             EEEECCHHHHHHHHHhCCC---------------cEEEE---CChhh-cCccCCcCEEEEeCchhhCCCHH---------
Confidence            8999865444443333221               11222   35433 33789999999999999985433         


Q ss_pred             ccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH
Q 016644          188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ  267 (385)
Q Consensus       188 ~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~  267 (385)
                                                   .+|+.-.+-|+|||+|++..++...          .    .....+.++..
T Consensus       113 -----------------------------~~l~~~~~~L~pgG~l~~~~~~~~~----------~----~~~~~~~~~~~  149 (259)
T 2p35_A          113 -----------------------------AVLSQLMDQLESGGVLAVQMPDNLQ----------E----PTHIAMHETAD  149 (259)
T ss_dssp             -----------------------------HHHHHHGGGEEEEEEEEEEEECCTT----------S----HHHHHHHHHHH
T ss_pred             -----------------------------HHHHHHHHhcCCCeEEEEEeCCCCC----------c----HHHHHHHHHhc
Confidence                                         3345678999999999999865421          1    12334444444


Q ss_pred             cCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhh-hhHHhhh
Q 016644          268 EGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAG-VLVDAHI  346 (385)
Q Consensus       268 eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~e-p~l~~hf  346 (385)
                      .+.......+....+..+++.+++.+.+++.| |+++..+...     ....+     ....+..|+++... +++. ++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~-----~~~~~-----~~~~~~~~l~~~~~~~~~~-~~  217 (259)
T 2p35_A          150 GGPWKDAFSGGGLRRKPLPPPSDYFNALSPKS-SRVDVWHTVY-----NHPMK-----DADSIVEWVKGTGLRPYLA-AA  217 (259)
T ss_dssp             HSTTGGGC-------CCCCCHHHHHHHHGGGE-EEEEEEEEEE-----EEEES-----CHHHHHHHHTTTTTTHHHH-TT
T ss_pred             CcchHHHhccccccccCCCCHHHHHHHHHhcC-CceEEEEEEe-----eeccC-----CchHHhhhhhcCcchHHHH-hC
Confidence            32222111111123667899999999999999 9865554322     00111     24667788887643 4444 78


Q ss_pred             ChHHHHHHHHHHHHHhhch
Q 016644          347 GDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       347 g~~i~delf~r~~~~~~~~  365 (385)
                      +++..+++.+++.+.+++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~  236 (259)
T 2p35_A          218 GEENREAFLADYTRRIAAA  236 (259)
T ss_dssp             CGGGHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.39  E-value=3.8e-12  Score=118.20  Aligned_cols=202  Identities=14%  Similarity=0.157  Sum_probs=129.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .         ..+++..|+........-+.+...            ..++ 
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~-   88 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIA--------R---------GYRYIALDADAAMLEVFRQKIAGV------------DRKV-   88 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHT--------T---------TCEEEEEESCHHHHHHHHHHTTTS------------CTTE-
T ss_pred             CCCEEEEeCCcCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHhhcc------------CCce-
Confidence            457999999999999987752        1         257888888655444444433110            1121 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++..--+|++++|+|+++.++||+.+.+.                                      +|+.-.+
T Consensus        89 -~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~--------------------------------------~l~~~~~  129 (263)
T 2yqz_A           89 -QVVQADARAIPLPDESVHGVIVVHLWHLVPDWPK--------------------------------------VLAEAIR  129 (263)
T ss_dssp             -EEEESCTTSCCSCTTCEEEEEEESCGGGCTTHHH--------------------------------------HHHHHHH
T ss_pred             -EEEEcccccCCCCCCCeeEEEECCchhhcCCHHH--------------------------------------HHHHHHH
Confidence             1123354333378999999999999999865332                                      3355678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHc-CCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQE-GLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~e-G~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      -|+|||++++.+...+ .        ...  ..+...|..+... |. .      ...+.++.+.+++.+.+++.| |++
T Consensus       130 ~L~pgG~l~~~~~~~~-~--------~~~--~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~l~~~G-f~~  190 (263)
T 2yqz_A          130 VLKPGGALLEGWDQAE-A--------SPE--WTLQERWRAFAAEEGF-P------VERGLHAKRLKEVEEALRRLG-LKP  190 (263)
T ss_dssp             HEEEEEEEEEEEEEEC-C--------CHH--HHHHHHHHHHHHHHTC-C------CCCCHHHHHHHHHHHHHHHTT-CCC
T ss_pred             HCCCCcEEEEEecCCC-c--------cHH--HHHHHHHHHHHHHhCC-C------cccccccCCHHHHHHHHHHcC-CCc
Confidence            8999999999843321 0        011  1134445544332 31 1      112456778999999999999 998


Q ss_pred             cEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhch
Q 016644          304 NKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       304 ~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~  365 (385)
                      ...+......      +.    ..+.+..++++.+.+.+. +++++..+++.+++.+.+.+.
T Consensus       191 ~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  241 (263)
T 2yqz_A          191 RTREVARWRE------ER----TPREALEALSERLYSFTQ-GLPEPVHARVMERLWAWAEAE  241 (263)
T ss_dssp             EEEEEEEEEE------EE----CHHHHHHHHHTTCSGGGS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEeeeec------CC----CHHHHHHHHHHhhccccc-CCCHHHHHHHHHHHHHHHHHh
Confidence            7776654110      11    235667777766666554 788888889889888888776

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.25  E-value=2.3e-10  Score=107.07  Aligned_cols=197  Identities=10%  Similarity=0.057  Sum_probs=116.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .+        ..+|+.-|+........-+.+..          ..-..++ 
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~--------~~--------~~~v~gvD~s~~~~~~a~~~~~~----------~~~~~~~-  113 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLAT--------AR--------DVRVTGISISRPQVNQANARATA----------AGLANRV-  113 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHH--------HS--------CCEEEEEESCHHHHHHHHHHHHH----------TTCTTTE-
T ss_pred             CCCEEEEeCCCCCHHHHHHHH--------hc--------CCEEEEEeCCHHHHHHHHHHHHh----------cCCCcce-
Confidence            457999999999999887763        11        25788888754333332222110          0000111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++.+--+|++++|+|+|+.++||+.+.+                                      .+|+..++
T Consensus       114 -~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~  154 (273)
T 3bus_A          114 -TFSYADAMDLPFEDASFDAVWALESLHHMPDRG--------------------------------------RALREMAR  154 (273)
T ss_dssp             -EEEECCTTSCCSCTTCEEEEEEESCTTTSSCHH--------------------------------------HHHHHHHT
T ss_pred             -EEEECccccCCCCCCCccEEEEechhhhCCCHH--------------------------------------HHHHHHHH
Confidence             123346544337889999999999999986532                                      23456789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++..+......        .   ......+..+..          .+ ...++++.+++...+++.| |++.
T Consensus       155 ~L~pgG~l~i~~~~~~~~~--------~---~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~l~~aG-f~~~  211 (273)
T 3bus_A          155 VLRPGGTVAIADFVLLAPV--------E---GAKKEAVDAFRA----------GG-GVLSLGGIDEYESDVRQAE-LVVT  211 (273)
T ss_dssp             TEEEEEEEEEEEEEESSCC--------C---HHHHHHHHHHHH----------HH-TCCCCCCHHHHHHHHHHTT-CEEE
T ss_pred             HcCCCeEEEEEEeeccCCC--------C---hhHHHHHHHHHh----------hc-CccCCCCHHHHHHHHHHcC-CeEE
Confidence            9999999999987764210        0   111222222211          01 1335789999999999999 9988


Q ss_pred             EEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHH
Q 016644          305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERR  361 (385)
Q Consensus       305 ~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~  361 (385)
                      .++.+...     . .    ..-..+...+++.... +...+|++..+.+.+.++..
T Consensus       212 ~~~~~~~~-----~-~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  257 (273)
T 3bus_A          212 STVDISAQ-----A-R----PSLVKTAEAFENARSQ-VEPFMGAEGLDRMIATFRGL  257 (273)
T ss_dssp             EEEECHHH-----H-T----THHHHHHHHHHHTHHH-HHHHHCHHHHHHHHHHHHHH
T ss_pred             EEEECcHh-----H-H----HHHHHHHHHHHHhHHH-HHhhcCHHHHHHHHHHHHHH
Confidence            77765310     0 0    0112222222332333 33467888878777777664

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.23  E-value=3.2e-10  Score=103.66  Aligned_cols=169  Identities=15%  Similarity=0.148  Sum_probs=111.5

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      .+..+|+|+|||+|..+..+...        +       |..+++.-|+........-+.+...             .++
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~--------~-------~~~~v~~vD~s~~~~~~a~~~~~~~-------------~~~   94 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEK--------Y-------PEATFTLVDMSEKMLEIAKNRFRGN-------------LKV   94 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHH--------C-------TTCEEEEEESCHHHHHHHHHHTCSC-------------TTE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh--------C-------CCCeEEEEECCHHHHHHHHHhhccC-------------CCE
Confidence            35689999999999998877632        2       5678999998655555444444321             121


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                        ..+.+++..-.++ +++|+|+++.++||+++.                                    +...+|+.-+
T Consensus        95 --~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~------------------------------------~~~~~l~~~~  135 (234)
T 3dtn_A           95 --KYIEADYSKYDFE-EKYDMVVSALSIHHLEDE------------------------------------DKKELYKRSY  135 (234)
T ss_dssp             --EEEESCTTTCCCC-SCEEEEEEESCGGGSCHH------------------------------------HHHHHHHHHH
T ss_pred             --EEEeCchhccCCC-CCceEEEEeCccccCCHH------------------------------------HHHHHHHHHH
Confidence              1233464443344 999999999999998431                                    1234556678


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccc---cccccCCHHHHHHHHHhcCc
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFN---IPVYASSLQEFKEVVEANGS  300 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~---~P~y~ps~~Ev~~~le~~gs  300 (385)
                      +-|+|||+|++......+.         ..........|.....++.++.+++..+.   -..+.++.+|+.+.+++.| 
T Consensus       136 ~~LkpgG~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-  205 (234)
T 3dtn_A          136 SILKESGIFINADLVHGET---------AFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAG-  205 (234)
T ss_dssp             HHEEEEEEEEEEEECBCSS---------HHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTT-
T ss_pred             HhcCCCcEEEEEEecCCCC---------hhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcC-
Confidence            9999999999988766421         11113456667776665556555443221   2345679999999999999 


Q ss_pred             eEecEEEEE
Q 016644          301 FVINKLEVF  309 (385)
Q Consensus       301 F~i~~le~~  309 (385)
                      |++.++...
T Consensus       206 F~~v~~~~~  214 (234)
T 3dtn_A          206 FRDVSCIYK  214 (234)
T ss_dssp             CEEEEEEEE
T ss_pred             CCceeeeee
Confidence            987766544

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.17  E-value=8e-10  Score=102.38  Aligned_cols=195  Identities=14%  Similarity=0.110  Sum_probs=120.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+....                ..+|+.-|+........-+.....             .++ 
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~----------------~~~v~~vD~s~~~~~~a~~~~~~~-------------~~~-  104 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKY----------------GAHTHGIDICSNIVNMANERVSGN-------------NKI-  104 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH----------------CCEEEEEESCHHHHHHHHHTCCSC-------------TTE-
T ss_pred             CCCEEEEECCCCCHHHHHHHHHc----------------CCEEEEEeCCHHHHHHHHHHhhcC-------------CCe-
Confidence            45799999999999988876322                257888888654444443333210             121 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++..--+|++++|+|+|+.++||++.                                    .|...+|+.-.+
T Consensus       105 -~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~  147 (266)
T 3ujc_A          105 -IFEANDILTKEFPENNFDLIYSRDAILALSL------------------------------------ENKNKLFQKCYK  147 (266)
T ss_dssp             -EEEECCTTTCCCCTTCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHH
T ss_pred             -EEEECccccCCCCCCcEEEEeHHHHHHhcCh------------------------------------HHHHHHHHHHHH
Confidence             1123354443478999999999999999831                                    134566777889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++..+......         .    +...+.......            ...+++.+++...+++.| |++.
T Consensus       148 ~L~pgG~l~~~~~~~~~~~---------~----~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~G-f~~~  201 (266)
T 3ujc_A          148 WLKPTGTLLITDYCATEKE---------N----WDDEFKEYVKQR------------KYTLITVEEYADILTACN-FKNV  201 (266)
T ss_dssp             HEEEEEEEEEEEEEESCGG---------G----CCHHHHHHHHHH------------TCCCCCHHHHHHHHHHTT-CEEE
T ss_pred             HcCCCCEEEEEEeccCCcc---------c----chHHHHHHHhcC------------CCCCCCHHHHHHHHHHcC-CeEE
Confidence            9999999999988764210         0    112222222211            234679999999999999 9987


Q ss_pred             EEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhh--hhHHhhhChHHHHHHHHHHHHHhhch
Q 016644          305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAG--VLVDAHIGDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       305 ~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~e--p~l~~hfg~~i~delf~r~~~~~~~~  365 (385)
                      ..+.+..             .+...+..|.+.+..  .-+.+.++++..+.+.+.....+...
T Consensus       202 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (266)
T 3ujc_A          202 VSKDLSD-------------YWNQLLEVEHKYLHENKEEFLKLFSEKKFISLDDGWSRKIKDS  251 (266)
T ss_dssp             EEEECHH-------------HHHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCH-------------HHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            7765430             123344444444432  11233567777777666666666543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.15  E-value=2.6e-10  Score=108.63  Aligned_cols=158  Identities=10%  Similarity=0.162  Sum_probs=94.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCce--eEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEF--SAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS  142 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~--qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~  142 (385)
                      +..+|+|+|||+|..|+.++..+.    .++       |..  .++..|...++....-+.+...          ....+
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~----~~~-------~~~~v~~~~vD~S~~ml~~a~~~~~~~----------~~~~~  110 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQ----AQY-------PGVCINNEVVEPSAEQIAKYKELVAKT----------SNLEN  110 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHH----HHS-------TTCEEEEEEECSCHHHHHHHHHHHHTC----------SSCTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHH----hhC-------CCceeeEEEEeCCHHHHHHHHHHHHhc----------cCCCc
Confidence            468999999999988776665442    222       334  4488997665555433322110          00111


Q ss_pred             eeeccccCcccccc-------CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHH
Q 016644          143 YFAAGVPGSFYRRL-------FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDL  215 (385)
Q Consensus       143 ~f~~~vpgSFy~rL-------fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~  215 (385)
                      +-+....+.. +.+       |+++++|+|+++.+|||+.+.+..+                                  
T Consensus       111 v~~~~~~~~~-~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l----------------------------------  155 (292)
T 2aot_A          111 VKFAWHKETS-SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATL----------------------------------  155 (292)
T ss_dssp             EEEEEECSCH-HHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHH----------------------------------
T ss_pred             ceEEEEecch-hhhhhhhccccCCCceeEEEEeeeeeecCCHHHHH----------------------------------
Confidence            1010111121 122       5789999999999999998755444                                  


Q ss_pred             HHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHH
Q 016644          216 AAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVV  295 (385)
Q Consensus       216 ~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~l  295 (385)
                          +.-++-|||||+|++.....+           ..    +...|......  +..      .-...+++++++...+
T Consensus       156 ----~~~~r~LkpgG~l~i~~~~~~-----------~~----~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~l  208 (292)
T 2aot_A          156 ----KFFHSLLGTNAKMLIIVVSGS-----------SG----WDKLWKKYGSR--FPQ------DDLCQYITSDDLTQML  208 (292)
T ss_dssp             ----HHHHHTEEEEEEEEEEEECTT-----------SH----HHHHHHHHGGG--SCC------CTTCCCCCHHHHHHHH
T ss_pred             ----HHHHHHcCCCcEEEEEEecCC-----------cc----HHHHHHHHHHh--ccC------CCcccCCCHHHHHHHH
Confidence                446789999999999875532           11    12233332111  110      0124568999999999


Q ss_pred             HhcCceEecEE
Q 016644          296 EANGSFVINKL  306 (385)
Q Consensus       296 e~~gsF~i~~l  306 (385)
                      ++.| |++...
T Consensus       209 ~~aG-f~~~~~  218 (292)
T 2aot_A          209 DNLG-LKYECY  218 (292)
T ss_dssp             HHHT-CCEEEE
T ss_pred             HHCC-CceEEE
Confidence            9999 887653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.13  E-value=8.4e-09  Score=98.39  Aligned_cols=225  Identities=11%  Similarity=0.094  Sum_probs=128.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..++.+....               + .+|+.-|+-.......-+.+...          .-..++ 
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~---------------~-~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~v~  125 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEY---------------D-VNVIGLTLSENQYAHDKAMFDEV----------DSPRRKE  125 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH---------------C-CEEEEEECCHHHHHHHHHHHHHS----------CCSSCEE
T ss_pred             CcCEEEEeeccCcHHHHHHHHhC---------------C-CEEEEEECCHHHHHHHHHHHHhc----------CCCCceE
Confidence            34799999999999998886332               3 67888898554443333222110          001122 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |..   +++ ..+  ++++|+|+|+.++|++.+... ...                            .+++..+|+.-.
T Consensus       126 ~~~---~d~-~~~--~~~fD~v~~~~~~~~~~d~~~-~~~----------------------------~~~~~~~l~~~~  170 (302)
T 3hem_A          126 VRI---QGW-EEF--DEPVDRIVSLGAFEHFADGAG-DAG----------------------------FERYDTFFKKFY  170 (302)
T ss_dssp             EEE---CCG-GGC--CCCCSEEEEESCGGGTTCCSS-CCC----------------------------TTHHHHHHHHHH
T ss_pred             EEE---CCH-HHc--CCCccEEEEcchHHhcCcccc-ccc----------------------------hhHHHHHHHHHH
Confidence            222   353 333  899999999999999877421 000                            124667888889


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccc-ccCCHHHHHHHHHhcCceE
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPV-YASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~~Ev~~~le~~gsF~  302 (385)
                      +-|+|||+|++...................+   -...+.+++...          ..|. +.|+++++...+++.| |+
T Consensus       171 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~p~~~~~s~~~~~~~l~~aG-f~  236 (302)
T 3hem_A          171 NLTPDDGRMLLHTITIPDKEEAQELGLTSPM---SLLRFIKFILTE----------IFPGGRLPRISQVDYYSSNAG-WK  236 (302)
T ss_dssp             HSSCTTCEEEEEEEECCCHHHHHHHTCCCCH---HHHHHHHHHHHH----------TCTTCCCCCHHHHHHHHHHHT-CE
T ss_pred             HhcCCCcEEEEEEEeccCccchhhccccccc---cccchHHHHHHh----------cCCCCCCCCHHHHHHHHHhCC-cE
Confidence            9999999999998876421000000000000   011122332221          2343 6799999999999999 99


Q ss_pred             ecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhh--hHHhhhChHHHHHHHHHHHHHhhchhHhhhcccceEEEEE
Q 016644          303 INKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGV--LVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVA  380 (385)
Q Consensus       303 i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep--~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~  380 (385)
                      +..++.+.         .    .+++.+..|.+.+-..  -+.+.++++..+ .+..|-..++...  .........+++
T Consensus       237 ~~~~~~~~---------~----~y~~tl~~w~~~~~~~~~~~~~~~~~~~~~-~w~~yl~~~~~~f--~~~~~~~~q~~~  300 (302)
T 3hem_A          237 VERYHRIG---------A----NYVPTLNAWADALQAHKDEAIALKGQETCD-IYMHYLRGCSDLF--RDKYTDVCQFTL  300 (302)
T ss_dssp             EEEEEECG---------G----GHHHHHHHHHHHHHHTHHHHHHHHCHHHHH-HHHHHHHHHHHHH--HTTSSEEEEEEE
T ss_pred             EEEEEeCc---------h----hHHHHHHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHHHHH--hCCCCeEEEEEE
Confidence            88887653         0    1445555555554432  233356665544 4555555555442  233455555544

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.07  E-value=4.2e-09  Score=99.87  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=96.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...        +        ..+++.-|+........-+.+..          ..-..++ 
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~v~gvD~s~~~~~~a~~~~~~----------~~~~~~~-  134 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRK--------F--------GVSIDCLNIAPVQNKRNEEYNNQ----------AGLADNI-  134 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHH--------H--------CCEEEEEESCHHHHHHHHHHHHH----------HTCTTTE-
T ss_pred             CCCEEEEeCCCCCHHHHHHHHH--------h--------CCEEEEEeCCHHHHHHHHHHHHh----------cCCCcce-
Confidence            4579999999999998887632        2        24788888854333322222110          0000112 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++..--+|++++|+|++..++||+.+.+                                      .+|+.-.+
T Consensus       135 -~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~  175 (297)
T 2o57_A          135 -TVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKL--------------------------------------KVFQECAR  175 (297)
T ss_dssp             -EEEECCTTSCSSCTTCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHHH
T ss_pred             -EEEEcCcccCCCCCCCEeEEEecchhhhcCCHH--------------------------------------HHHHHHHH
Confidence             123346544337899999999999999987622                                      23455688


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++......+....          ..+...+..+              ..| .+++.+++...+++.| |++.
T Consensus       176 ~LkpgG~l~~~~~~~~~~~~~----------~~~~~~~~~~--------------~~~-~~~~~~~~~~~l~~aG-f~~~  229 (297)
T 2o57_A          176 VLKPRGVMAITDPMKEDGIDK----------SSIQPILDRI--------------KLH-DMGSLGLYRSLAKECG-LVTL  229 (297)
T ss_dssp             HEEEEEEEEEEEEEECTTCCG----------GGGHHHHHHH--------------TCS-SCCCHHHHHHHHHHTT-EEEE
T ss_pred             HcCCCeEEEEEEeccCCCCch----------HHHHHHHHHh--------------cCC-CCCCHHHHHHHHHHCC-CeEE
Confidence            999999999998776422110          1122222211              112 3579999999999999 9987


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      +++.+
T Consensus       230 ~~~~~  234 (297)
T 2o57_A          230 RTFSR  234 (297)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            77654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.06  E-value=1.5e-09  Score=99.98  Aligned_cols=172  Identities=15%  Similarity=0.095  Sum_probs=104.9

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644           28 ASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA  107 (385)
Q Consensus        28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv  107 (385)
                      ..|.......+.....+...+...+..+        .+..+|+|+|||+|..+..+..        .         ..+|
T Consensus        12 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v   66 (240)
T 3dli_A           12 DYYFLFEEKFRGSRELVKARLRRYIPYF--------KGCRRVLDIGCGRGEFLELCKE--------E---------GIES   66 (240)
T ss_dssp             CHHHHHHHHHTCCHHHHHHHHGGGGGGT--------TTCSCEEEETCTTTHHHHHHHH--------H---------TCCE
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhh--------cCCCeEEEEeCCCCHHHHHHHh--------C---------CCcE
Confidence            4566665554443333333332222111        2357899999999998876542        1         1467


Q ss_pred             EecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccc--cCCCCcccEEEcccccccccCCchhhhccc
Q 016644          108 FFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRR--LFPTRSIDFFHSAFSLHWLSQVPESALDKR  185 (385)
Q Consensus       108 ~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~r--LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~  185 (385)
                      +..|+........-+.                     +..+.++..+-  -+|++++|+|+|+.++||+.+ |       
T Consensus        67 ~gvD~s~~~~~~a~~~---------------------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~-~-------  117 (240)
T 3dli_A           67 IGVDINEDMIKFCEGK---------------------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP-E-------  117 (240)
T ss_dssp             EEECSCHHHHHHHHTT---------------------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG-G-------
T ss_pred             EEEECCHHHHHHHHhh---------------------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc-H-------
Confidence            8888743222221111                     11122343332  368899999999999999853 1       


Q ss_pred             ccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHH
Q 016644          186 SMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDL  265 (385)
Q Consensus       186 ~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~m  265 (385)
                                                  |+..+|+.-.+-|+|||+|++...+...            +.. +.+.+   
T Consensus       118 ----------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~------------~~~-~~~~~---  153 (240)
T 3dli_A          118 ----------------------------RLFELLSLCYSKMKYSSYIVIESPNPTS------------LYS-LINFY---  153 (240)
T ss_dssp             ----------------------------GHHHHHHHHHHHBCTTCCEEEEEECTTS------------HHH-HHHHT---
T ss_pred             ----------------------------HHHHHHHHHHHHcCCCcEEEEEeCCcch------------hHH-HHHHh---
Confidence                                        2345667778999999999998876431            101 11111   


Q ss_pred             HHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          266 VQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       266 v~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                           +.       .-..++.+.+++...+++.| |++..++.+.
T Consensus       154 -----~~-------~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~  185 (240)
T 3dli_A          154 -----ID-------PTHKKPVHPETLKFILEYLG-FRDVKIEFFE  185 (240)
T ss_dssp             -----TS-------TTCCSCCCHHHHHHHHHHHT-CEEEEEEEEC
T ss_pred             -----cC-------ccccccCCHHHHHHHHHHCC-CeEEEEEEec
Confidence                 11       11346678899999999999 9998888875

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.06  E-value=9.1e-10  Score=99.56  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=100.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...                 ..+++.-|+........-+.++.              +--|
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~~--------------~~~~   93 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA-----------------GRTVYGIEPSREMRMIAKEKLPK--------------EFSI   93 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT-----------------TCEEEEECSCHHHHHHHHHHSCT--------------TCCE
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC-----------------CCeEEEEeCCHHHHHHHHHhCCC--------------ceEE
Confidence            3579999999999988877521                 25788888855443333333320              1112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                         +.+++.+--++ +++|+|+++.++||+.+..                                    ...+|+.-++
T Consensus        94 ---~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~------------------------------------~~~~l~~~~~  133 (220)
T 3hnr_A           94 ---TEGDFLSFEVP-TSIDTIVSTYAFHHLTDDE------------------------------------KNVAIAKYSQ  133 (220)
T ss_dssp             ---ESCCSSSCCCC-SCCSEEEEESCGGGSCHHH------------------------------------HHHHHHHHHH
T ss_pred             ---EeCChhhcCCC-CCeEEEEECcchhcCChHH------------------------------------HHHHHHHHHH
Confidence               23354443455 9999999999999985421                                    1235566789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++..+...+.             ......+..+...|....   ..-..+.++++.+++...+++.| |++.
T Consensus       134 ~LkpgG~l~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~aG-f~v~  196 (220)
T 3hnr_A          134 LLNKGGKIVFADTIFADQ-------------DAYDKTVEAAKQRGFHQL---ANDLQTEYYTRIPVMQTIFENNG-FHVT  196 (220)
T ss_dssp             HSCTTCEEEEEEECBSSH-------------HHHHHHHHHHHHTTCHHH---HHHHHHSCCCBHHHHHHHHHHTT-EEEE
T ss_pred             hcCCCCEEEEEeccccCh-------------HHHHHHHHHHHhCCCccc---hhhcchhhcCCHHHHHHHHHHCC-CEEE
Confidence            999999999987554311             223444444445553211   11123567889999999999999 9887


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      ..+..
T Consensus       197 ~~~~~  201 (220)
T 3hnr_A          197 FTRLN  201 (220)
T ss_dssp             EEECS
T ss_pred             Eeecc
Confidence            76643

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.06  E-value=2.2e-09  Score=99.29  Aligned_cols=195  Identities=17%  Similarity=0.207  Sum_probs=112.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...        .       + .+|+..|+-......+-+.+...          .-..++ 
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~--------~-------~-~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~-   98 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADY--------V-------K-GQITGIDLFPDFIEIFNENAVKA----------NCADRV-   98 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHH--------C-------C-SEEEEEESCHHHHHHHHHHHHHT----------TCTTTE-
T ss_pred             CCCeEEEeCCCCCHHHHHHHHh--------C-------C-CeEEEEECCHHHHHHHHHHHHHc----------CCCCce-
Confidence            3469999999999998887632        2       3 38888888543333332222110          001112 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-+++..--+|++++|+|+|+.++||+ +.+                                      .+|+.-.+
T Consensus        99 -~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~--------------------------------------~~l~~~~~  138 (257)
T 3f4k_A           99 -KGITGSMDNLPFQNEELDLIWSEGAIYNI-GFE--------------------------------------RGMNEWSK  138 (257)
T ss_dssp             -EEEECCTTSCSSCTTCEEEEEEESCSCCC-CHH--------------------------------------HHHHHHHT
T ss_pred             -EEEECChhhCCCCCCCEEEEEecChHhhc-CHH--------------------------------------HHHHHHHH
Confidence             11233543222788999999999999998 322                                      23455678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++..........        .  ..+...|...               .| ..++.+++...+++.| |++.
T Consensus       139 ~L~pgG~l~~~~~~~~~~~~--------~--~~~~~~~~~~---------------~~-~~~~~~~~~~~l~~aG-f~~v  191 (257)
T 3f4k_A          139 YLKKGGFIAVSEASWFTSER--------P--AEIEDFWMDA---------------YP-EISVIPTCIDKMERAG-YTPT  191 (257)
T ss_dssp             TEEEEEEEEEEEEEESSSCC--------C--HHHHHHHHHH---------------CT-TCCBHHHHHHHHHHTT-EEEE
T ss_pred             HcCCCcEEEEEEeeccCCCC--------h--HHHHHHHHHh---------------CC-CCCCHHHHHHHHHHCC-CeEE
Confidence            99999999999865422110        0  2244445432               11 1578999999999999 9987


Q ss_pred             EEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhch
Q 016644          305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCY  365 (385)
Q Consensus       305 ~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~  365 (385)
                      ....+..     ...+.+   +...    ++...+.+...+-++...+++.++..+.+..+
T Consensus       192 ~~~~~~~-----~~w~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (257)
T 3f4k_A          192 AHFILPE-----NCWTEH---YFAP----QDEVRETFMKEHAGNKTAMDFMKGQQYERSLY  240 (257)
T ss_dssp             EEEECCG-----GGTCCC---CCHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCh-----hhHHHH---HHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            7655431     011111   1112    22222333333445566666666666655554

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.04  E-value=5.5e-09  Score=97.69  Aligned_cols=151  Identities=15%  Similarity=0.148  Sum_probs=97.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..++.+..                .+..+|+.-|+.......+-+.+..          ..-.+++ 
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~----------------~~~~~v~gvD~s~~~~~~a~~~~~~----------~~~~~~v~   99 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAG----------------HVTGQVTGLDFLSGFIDIFNRNARQ----------SGLQNRVT   99 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHT----------------TCSSEEEEEESCHHHHHHHHHHHHH----------TTCTTTEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHh----------------ccCCEEEEEeCCHHHHHHHHHHHHH----------cCCCcCcE
Confidence            468999999999998887751                1346889999865444333222210          0001112 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |.   -+++.+--+|++++|+|+|+.++|++ +.+                                      .+|+.-.
T Consensus       100 ~~---~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~--------------------------------------~~l~~~~  137 (267)
T 3kkz_A          100 GI---VGSMDDLPFRNEELDLIWSEGAIYNI-GFE--------------------------------------RGLNEWR  137 (267)
T ss_dssp             EE---ECCTTSCCCCTTCEEEEEESSCGGGT-CHH--------------------------------------HHHHHHG
T ss_pred             EE---EcChhhCCCCCCCEEEEEEcCCceec-CHH--------------------------------------HHHHHHH
Confidence            32   23543323788999999999999998 322                                      2345568


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||++++..........         . ..+...|..-               .| .+++.+++.+.+++.| |++
T Consensus       138 ~~LkpgG~l~~~~~~~~~~~~---------~-~~~~~~~~~~---------------~~-~~~~~~~~~~~l~~aG-f~~  190 (267)
T 3kkz_A          138 KYLKKGGYLAVSECSWFTDER---------P-AEINDFWMDA---------------YP-EIDTIPNQVAKIHKAG-YLP  190 (267)
T ss_dssp             GGEEEEEEEEEEEEEESSSCC---------C-HHHHHHHHHH---------------CT-TCEEHHHHHHHHHHTT-EEE
T ss_pred             HHcCCCCEEEEEEeeecCCCC---------h-HHHHHHHHHh---------------CC-CCCCHHHHHHHHHHCC-CEE
Confidence            899999999999876431111         1 2244444321               12 4679999999999999 998


Q ss_pred             cEEEEEe
Q 016644          304 NKLEVFK  310 (385)
Q Consensus       304 ~~le~~~  310 (385)
                      ..++.+.
T Consensus       191 v~~~~~~  197 (267)
T 3kkz_A          191 VATFILP  197 (267)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            8776653

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.02  E-value=1.4e-09  Score=102.81  Aligned_cols=164  Identities=15%  Similarity=0.177  Sum_probs=98.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..|+.+..        ++     ..|..+|+--|+........-+.+...          ....++ 
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~--------~~-----~~~~~~v~gvD~s~~ml~~A~~~~~~~----------~~~~~v~  126 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRR--------NI-----HHDNCKIIAIDNSPAMIERCRRHIDAY----------KAPTPVD  126 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHH--------TC-----CSSSCEEEEEESCHHHHHHHHHHHHTS----------CCSSCEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHH--------hc-----CCCCCEEEEEECCHHHHHHHHHHHHhh----------ccCceEE
Confidence            347999999999999888763        22     225678999998665544443333211          001122 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |+.   +++. . +|..++|+++|+++|||+..  .                                  |...+|+.-+
T Consensus       127 ~~~---~D~~-~-~~~~~~d~v~~~~~l~~~~~--~----------------------------------~~~~~l~~i~  165 (261)
T 4gek_A          127 VIE---GDIR-D-IAIENASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIY  165 (261)
T ss_dssp             EEE---SCTT-T-CCCCSEEEEEEESCGGGSCH--H----------------------------------HHHHHHHHHH
T ss_pred             Eee---cccc-c-ccccccccceeeeeeeecCc--h----------------------------------hHhHHHHHHH
Confidence            333   3532 2 46677999999999999742  1                                  2345567788


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH-cCCccccccc----ccccccccCCHHHHHHHHHhc
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ-EGLITGEKRD----SFNIPVYASSLQEFKEVVEAN  298 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~d----~f~~P~y~ps~~Ev~~~le~~  298 (385)
                      +-|+|||+|+++-......         ....+.+...+.++.. .| .++.++.    .........|.+|++..+++.
T Consensus       166 ~~LkpGG~lii~e~~~~~~---------~~~~~~~~~~~~~~~~~~g-~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~A  235 (261)
T 4gek_A          166 QGLNPGGALVLSEKFSFED---------AKVGELLFNMHHDFKRANG-YSELEISQKRSMLENVMLTDSVETHKARLHKA  235 (261)
T ss_dssp             HHEEEEEEEEEEEEBCCSS---------HHHHHHHHHHHHHHHHHTT-GGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHH
T ss_pred             HHcCCCcEEEEEeccCCCC---------HHHHHHHHHHHHHHHHHcC-CCHHHHHHHHhhhcccccCCCHHHHHHHHHHc
Confidence            9999999999875544211         1111234444444433 34 3332221    111223456899999999999


Q ss_pred             CceEe
Q 016644          299 GSFVI  303 (385)
Q Consensus       299 gsF~i  303 (385)
                      | |+.
T Consensus       236 G-F~~  239 (261)
T 4gek_A          236 G-FEH  239 (261)
T ss_dssp             T-CSE
T ss_pred             C-CCe
Confidence            9 864

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.02  E-value=3.8e-09  Score=95.80  Aligned_cols=177  Identities=15%  Similarity=0.117  Sum_probs=105.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...                 ..+++.-|+........-+.+....-.      .....++ 
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~~~~~~------~~~~~~~-   85 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK-----------------GYSVTGIDINSEAIRLAETAARSPGLN------QKTGGKA-   85 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-----------------TCEEEEEESCHHHHHHHHHHTTCCSCC------SSSSCEE-
T ss_pred             CCCeEEEECCCCCHHHHHHHhC-----------------CCeEEEEECCHHHHHHHHHHHHhcCCc------cccCcce-
Confidence            4579999999999988877521                 257888898655444444444321000      0000111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-+++..--++++++|+|+++.++|++.+..                                   ++..+|+.-.+
T Consensus        86 -~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~-----------------------------------~~~~~l~~~~~  129 (235)
T 3sm3_A           86 -EFKVENASSLSFHDSSFDFAVMQAFLTSVPDPK-----------------------------------ERSRIIKEVFR  129 (235)
T ss_dssp             -EEEECCTTSCCSCTTCEEEEEEESCGGGCCCHH-----------------------------------HHHHHHHHHHH
T ss_pred             -EEEEecccccCCCCCceeEEEEcchhhcCCCHH-----------------------------------HHHHHHHHHHH
Confidence             112234443347899999999999999986522                                   12345677789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccc--ccccccCCHHHHHHHHHhcCceE
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSF--NIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f--~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      -|+|||+|+++.+++....        ..+.......+......|..........  ....++++.+|+..++++.| |+
T Consensus       130 ~L~pgG~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aG-f~  200 (235)
T 3sm3_A          130 VLKPGAYLYLVEFGQNWHL--------KLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCR-FE  200 (235)
T ss_dssp             HEEEEEEEEEEEEBCCTTS--------HHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTT-EE
T ss_pred             HcCCCeEEEEEECCcchhH--------HHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcC-CE
Confidence            9999999999998874210        1111111222222212222111111111  23356889999999999999 99


Q ss_pred             ecEEEEEe
Q 016644          303 INKLEVFK  310 (385)
Q Consensus       303 i~~le~~~  310 (385)
                      +..++...
T Consensus       201 ~~~~~~~~  208 (235)
T 3sm3_A          201 IDYFRVKE  208 (235)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEecc
Confidence            99888765

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.02  E-value=1.3e-09  Score=102.27  Aligned_cols=163  Identities=15%  Similarity=0.184  Sum_probs=98.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ..       |..+++.-|+-.+.....-+.+..           ....++ 
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~--------~~-------~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~-   89 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAK--------NN-------PDAEITSIDISPESLEKARENTEK-----------NGIKNV-   89 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHH--------HC-------TTSEEEEEESCHHHHHHHHHHHHH-----------TTCCSE-
T ss_pred             CCCeEEEecCCCCHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHHHHH-----------cCCCCc-
Confidence            457999999999998877752        22       567899999855444333222211           001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-++...-.+|++++|+|+++.++||+.+.+.                                      +|+.-.+
T Consensus        90 -~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~--------------------------------------~l~~~~~  130 (276)
T 3mgg_A           90 -KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEE--------------------------------------ALKSLKK  130 (276)
T ss_dssp             -EEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHH--------------------------------------HHHHHHH
T ss_pred             -EEEEcccccCCCCCCCeeEEEEechhhhcCCHHH--------------------------------------HHHHHHH
Confidence             1122355554588999999999999999876433                                      3345678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++......+......    .   ..+...|..+.....         .......+.+++..++++.| |++.
T Consensus       131 ~L~pgG~l~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~aG-f~~v  193 (276)
T 3mgg_A          131 VLKPGGTITVIEGDHGSCYFHPE----G---KKAIEAWNCLIRVQA---------YMKGNSLVGRQIYPLLQESG-FEKI  193 (276)
T ss_dssp             HEEEEEEEEEEEECGGGCEEESC----C---HHHHHHHHHHHHHHH---------HTTCCTTGGGGHHHHHHHTT-CEEE
T ss_pred             HcCCCcEEEEEEcCCCCceECCC----c---HHHHHHHHHHHHHHH---------hcCCCcchHHHHHHHHHHCC-CCeE
Confidence            89999999998765432110000    0   112333332221100         00112235678999999999 9998


Q ss_pred             EEEEEe
Q 016644          305 KLEVFK  310 (385)
Q Consensus       305 ~le~~~  310 (385)
                      .++.+.
T Consensus       194 ~~~~~~  199 (276)
T 3mgg_A          194 RVEPRM  199 (276)
T ss_dssp             EEEEEE
T ss_pred             EEeeEE
Confidence            888764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.01  E-value=1.6e-09  Score=96.83  Aligned_cols=142  Identities=15%  Similarity=0.091  Sum_probs=97.8

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|.++..+..        .         ..+++.-|+........-+..+.               --|.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~~~~a~~~~~~---------------~~~~   89 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLAS--------L---------GHQIEGLEPATRLVELARQTHPS---------------VTFH   89 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHH--------T---------TCCEEEECCCHHHHHHHHHHCTT---------------SEEE
T ss_pred             CCeEEEecCCCCHHHHHHHh--------c---------CCeEEEEeCCHHHHHHHHHhCCC---------------CeEE
Confidence            46899999999998887752        1         24778888754333333222221               1122


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                         -+++.+--++++++|+|+++.++||++..                                    |...+|+.-++-
T Consensus        90 ---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~------------------------------------~~~~~l~~~~~~  130 (203)
T 3h2b_A           90 ---HGTITDLSDSPKRWAGLLAWYSLIHMGPG------------------------------------ELPDALVALRMA  130 (203)
T ss_dssp             ---CCCGGGGGGSCCCEEEEEEESSSTTCCTT------------------------------------THHHHHHHHHHT
T ss_pred             ---eCcccccccCCCCeEEEEehhhHhcCCHH------------------------------------HHHHHHHHHHHH
Confidence               23544433788999999999999998521                                    234456677899


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecE
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINK  305 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~  305 (385)
                      |+|||++++..+.....                               ..++....+.++.+.+++...+++.| |++..
T Consensus       131 L~pgG~l~i~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~  178 (203)
T 3h2b_A          131 VEDGGGLLMSFFSGPSL-------------------------------EPMYHPVATAYRWPLPELAQALETAG-FQVTS  178 (203)
T ss_dssp             EEEEEEEEEEEECCSSC-------------------------------EEECCSSSCEEECCHHHHHHHHHHTT-EEEEE
T ss_pred             cCCCcEEEEEEccCCch-------------------------------hhhhchhhhhccCCHHHHHHHHHHCC-CcEEE
Confidence            99999999998766421                               11122234667889999999999999 99999


Q ss_pred             EEEEe
Q 016644          306 LEVFK  310 (385)
Q Consensus       306 le~~~  310 (385)
                      ++.+.
T Consensus       179 ~~~~~  183 (203)
T 3h2b_A          179 SHWDP  183 (203)
T ss_dssp             EEECT
T ss_pred             EEecC
Confidence            88875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.01  E-value=1.7e-09  Score=100.73  Aligned_cols=155  Identities=15%  Similarity=0.167  Sum_probs=94.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ..       +  +|+..|+-.......-+.+..           ....++ 
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~--------~~-------~--~v~gvD~s~~~l~~a~~~~~~-----------~~~~~v-   87 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAP--------FV-------K--KVVAFDLTEDILKVARAFIEG-----------NGHQQV-   87 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGG--------GS-------S--EEEEEESCHHHHHHHHHHHHH-----------TTCCSE-
T ss_pred             CCCEEEEEeCCCCHHHHHHHH--------hC-------C--EEEEEeCCHHHHHHHHHHHHh-----------cCCCce-
Confidence            457999999999998877652        11       2  788888754433332222110           001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-+++..--+|++++|+|+|+.++||+.+.+..                                      |+.-.+
T Consensus        88 -~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~--------------------------------------l~~~~r  128 (260)
T 1vl5_A           88 -EYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASF--------------------------------------VSEAYR  128 (260)
T ss_dssp             -EEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHH--------------------------------------HHHHHH
T ss_pred             -EEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHH--------------------------------------HHHHHH
Confidence             11233544333789999999999999999654333                                      355678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++......+.          ..   +...+..+....       +  .......+.+++.+.+++.| |++.
T Consensus       129 ~LkpgG~l~~~~~~~~~~----------~~---~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~l~~aG-f~~~  185 (260)
T 1vl5_A          129 VLKKGGQLLLVDNSAPEN----------DA---FDVFYNYVEKER-------D--YSHHRAWKKSDWLKMLEEAG-FELE  185 (260)
T ss_dssp             HEEEEEEEEEEEEEBCSS----------HH---HHHHHHHHHHHH-------C--TTCCCCCBHHHHHHHHHHHT-CEEE
T ss_pred             HcCCCCEEEEEEcCCCCC----------HH---HHHHHHHHHHhc-------C--ccccCCCCHHHHHHHHHHCC-CeEE
Confidence            999999999976554211          11   122222111100       0  01234568999999999999 9998


Q ss_pred             EEEEEe
Q 016644          305 KLEVFK  310 (385)
Q Consensus       305 ~le~~~  310 (385)
                      .++.+.
T Consensus       186 ~~~~~~  191 (260)
T 1vl5_A          186 ELHCFH  191 (260)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            888775

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.99  E-value=1.2e-09  Score=103.10  Aligned_cols=165  Identities=13%  Similarity=0.159  Sum_probs=101.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...                 ..+|+..|+........-+.+...          .-..++ 
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~v-  119 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER-----------------GHQVILCDLSAQMIDRAKQAAEAK----------GVSDNM-  119 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-----------------TCEEEEEESCHHHHHHHHHHHHC-----------CCGGGE-
T ss_pred             CCCEEEEeCCcchHHHHHHHHC-----------------CCEEEEEECCHHHHHHHHHHHHhc----------CCCcce-
Confidence            4579999999999988877521                 257888888554444333322210          000111 


Q ss_pred             eccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                       ..+-+++.+-. ++++++|+|+++.++||+.+.+                                      .+|+.-+
T Consensus       120 -~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~  160 (285)
T 4htf_A          120 -QFIHCAAQDVASHLETPVDLILFHAVLEWVADPR--------------------------------------SVLQTLW  160 (285)
T ss_dssp             -EEEESCGGGTGGGCSSCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHH
T ss_pred             -EEEEcCHHHhhhhcCCCceEEEECchhhcccCHH--------------------------------------HHHHHHH
Confidence             11223544443 6889999999999999985532                                      2445678


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||++++....+..          ..+...+...|. ....+.....  .....+.++.+++|+...+++.| |++
T Consensus       161 ~~LkpgG~l~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~aG-f~v  226 (285)
T 4htf_A          161 SVLRPGGVLSLMFYNAHG----------LLMHNMVAGNFD-YVQAGMPKKK--KRTLSPDYPRDPTQVYLWLEEAG-WQI  226 (285)
T ss_dssp             HTEEEEEEEEEEEEBHHH----------HHHHHHHTTCHH-HHHTTCCCC------CCCSCCBCHHHHHHHHHHTT-CEE
T ss_pred             HHcCCCeEEEEEEeCCch----------HHHHHHHhcCHH-HHhhhccccc--cccCCCCCCCCHHHHHHHHHHCC-Cce
Confidence            999999999999877631          111011111122 2222322111  11234567789999999999999 999


Q ss_pred             cEEEEEe
Q 016644          304 NKLEVFK  310 (385)
Q Consensus       304 ~~le~~~  310 (385)
                      ...+.+.
T Consensus       227 ~~~~~~~  233 (285)
T 4htf_A          227 MGKTGVR  233 (285)
T ss_dssp             EEEEEES
T ss_pred             eeeeeEE
Confidence            8888775

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.98  E-value=2.3e-08  Score=94.27  Aligned_cols=165  Identities=17%  Similarity=0.254  Sum_probs=96.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+....               + .+|+.-|+-.+.....-+.+...          ....++ 
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~---------------~-~~v~gvd~s~~~~~~a~~~~~~~----------~~~~~~-  116 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKY---------------D-VNVVGLTLSKNQANHVQQLVANS----------ENLRSK-  116 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH---------------C-CEEEEEESCHHHHHHHHHHHHTC----------CCCSCE-
T ss_pred             CcCEEEEECCcccHHHHHHHHHc---------------C-CEEEEEECCHHHHHHHHHHHHhc----------CCCCCe-
Confidence            35799999999999888776322               2 48888888554433332222110          000111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-+++ .. +| +++|+|+|..++|++...                                    |+..+|+.-.+
T Consensus       117 -~~~~~d~-~~-~~-~~fD~v~~~~~l~~~~~~------------------------------------~~~~~l~~~~~  156 (287)
T 1kpg_A          117 -RVLLAGW-EQ-FD-EPVDRIVSIGAFEHFGHE------------------------------------RYDAFFSLAHR  156 (287)
T ss_dssp             -EEEESCG-GG-CC-CCCSEEEEESCGGGTCTT------------------------------------THHHHHHHHHH
T ss_pred             -EEEECCh-hh-CC-CCeeEEEEeCchhhcChH------------------------------------HHHHHHHHHHH
Confidence             1122353 33 35 899999999999998531                                    13345566788


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++..............  +... ..-...+.+.+...+.         .-...|+++++...+++.| |++.
T Consensus       157 ~LkpgG~l~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~~l~~aG-f~~~  223 (287)
T 1kpg_A          157 LLPADGVMLLHTITGLHPKEIHER--GLPM-SFTFARFLKFIVTEIF---------PGGRLPSIPMVQECASANG-FTVT  223 (287)
T ss_dssp             HSCTTCEEEEEEEEECCHHHHTTT--TCSC-HHHHHHHHHHHHHHTS---------TTCCCCCHHHHHHHHHTTT-CEEE
T ss_pred             hcCCCCEEEEEEecCCCccccccc--cccc-cccccchhhhHHheeC---------CCCCCCCHHHHHHHHHhCC-cEEE
Confidence            999999999998876421100000  0110 0011122232222111         1125679999999999999 9988


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      +++.+
T Consensus       224 ~~~~~  228 (287)
T 1kpg_A          224 RVQSL  228 (287)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            87754

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.98  E-value=5.8e-10  Score=104.37  Aligned_cols=147  Identities=13%  Similarity=0.136  Sum_probs=92.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..                 +..+|+..|+.....    .....            ..+--|
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~~~~----~~a~~------------~~~~~~   80 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALAN-----------------QGLFVYAVEPSIVMR----QQAVV------------HPQVEW   80 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHT-----------------TTCEEEEECSCHHHH----HSSCC------------CTTEEE
T ss_pred             CCCEEEEEcCcccHHHHHHHh-----------------CCCEEEEEeCCHHHH----HHHHh------------ccCCEE
Confidence            458999999999998887751                 347889999854111    11110            011113


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .   -+++..--+|++++|+|+|+.++||+.+.+                                      .+|+.-.+
T Consensus        81 ~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~  119 (261)
T 3ege_A           81 F---TGYAENLALPDKSVDGVISILAIHHFSHLE--------------------------------------KSFQEMQR  119 (261)
T ss_dssp             E---CCCTTSCCSCTTCBSEEEEESCGGGCSSHH--------------------------------------HHHHHHHH
T ss_pred             E---ECchhhCCCCCCCEeEEEEcchHhhccCHH--------------------------------------HHHHHHHH
Confidence            2   235433237889999999999999985433                                      33455788


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+ ||++++.........        ..|   +...+..+...            ...++++.+++. .+++.| |++.
T Consensus       120 ~Lk-gG~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~------------~~~~~~~~~~~~-~l~~aG-F~~v  173 (261)
T 3ege_A          120 IIR-DGTIVLLTFDIRLAQ--------RIW---LYDYFPFLWED------------ALRFLPLDEQIN-LLQENT-KRRV  173 (261)
T ss_dssp             HBC-SSCEEEEEECGGGCC--------CCG---GGGTCHHHHHH------------HHTSCCHHHHHH-HHHHHH-CSEE
T ss_pred             HhC-CcEEEEEEcCCchhH--------HHH---HHHHHHHHhhh------------hhhhCCCHHHHH-HHHHcC-CCce
Confidence            999 999988887654221        011   11111111111            124577899999 999999 9888


Q ss_pred             EEEEEeC
Q 016644          305 KLEVFKG  311 (385)
Q Consensus       305 ~le~~~~  311 (385)
                      ..+.+..
T Consensus       174 ~~~~~~~  180 (261)
T 3ege_A          174 EAIPFLL  180 (261)
T ss_dssp             EEEECCE
T ss_pred             eEEEecC
Confidence            8887753

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.95  E-value=4.9e-09  Score=96.66  Aligned_cols=154  Identities=18%  Similarity=0.260  Sum_probs=93.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..+..+..        ..         .+++..|+-.......-+.+..           ....++ 
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~--------~~---------~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~v~   72 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSP--------YV---------QECIGVDATKEMVEVASSFAQE-----------KGVENVR   72 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGG--------GS---------SEEEEEESCHHHHHHHHHHHHH-----------HTCCSEE
T ss_pred             CCCEEEEEccCcCHHHHHHHH--------hC---------CEEEEEECCHHHHHHHHHHHHH-----------cCCCCeE
Confidence            457999999999998877652        11         2778888754333332222110           001122 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |.   -+++..--++++++|+|+|+.++||+.+.+.                                      +|+.-+
T Consensus        73 ~~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~--------------------------------------~l~~~~  111 (239)
T 1xxl_A           73 FQ---QGTAESLPFPDDSFDIITCRYAAHHFSDVRK--------------------------------------AVREVA  111 (239)
T ss_dssp             EE---ECBTTBCCSCTTCEEEEEEESCGGGCSCHHH--------------------------------------HHHHHH
T ss_pred             EE---ecccccCCCCCCcEEEEEECCchhhccCHHH--------------------------------------HHHHHH
Confidence            22   2354332378899999999999999865332                                      345567


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||++++........         ... ..+.+.+..+ ..+           ......+.+++...+++.| |++
T Consensus       112 ~~LkpgG~l~~~~~~~~~~---------~~~-~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~ll~~aG-f~~  168 (239)
T 1xxl_A          112 RVLKQDGRFLLVDHYAPED---------PVL-DEFVNHLNRL-RDP-----------SHVRESSLSEWQAMFSANQ-LAY  168 (239)
T ss_dssp             HHEEEEEEEEEEEECBCSS---------HHH-HHHHHHHHHH-HCT-----------TCCCCCBHHHHHHHHHHTT-EEE
T ss_pred             HHcCCCcEEEEEEcCCCCC---------hhH-HHHHHHHHHh-ccc-----------cccCCCCHHHHHHHHHHCC-CcE
Confidence            8999999999976554211         101 1111111111 111           1234468999999999999 998


Q ss_pred             cEEEEEe
Q 016644          304 NKLEVFK  310 (385)
Q Consensus       304 ~~le~~~  310 (385)
                      ..++.+.
T Consensus       169 ~~~~~~~  175 (239)
T 1xxl_A          169 QDIQKWN  175 (239)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            8888764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.94  E-value=1.6e-08  Score=93.36  Aligned_cols=151  Identities=9%  Similarity=-0.040  Sum_probs=91.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+....                ..+++.-|+-.......-+....          ..-..++ 
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~----------------~~~v~gvD~s~~~l~~a~~~~~~----------~~~~~~v-   88 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH----------------GITGTGIDMSSLFTAQAKRRAEE----------LGVSERV-   88 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT----------------CCEEEEEESCHHHHHHHHHHHHH----------TTCTTTE-
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc----------------CCeEEEEeCCHHHHHHHHHHHHh----------cCCCcce-
Confidence            45799999999999888776321                24778888754333332222110          0000122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++.+ +.+++++|+|+|..++|++.+.+..+                                      +.-.+
T Consensus        89 -~~~~~d~~~-~~~~~~fD~V~~~~~~~~~~~~~~~l--------------------------------------~~~~r  128 (256)
T 1nkv_A           89 -HFIHNDAAG-YVANEKCDVAACVGATWIAGGFAGAE--------------------------------------ELLAQ  128 (256)
T ss_dssp             -EEEESCCTT-CCCSSCEEEEEEESCGGGTSSSHHHH--------------------------------------HHHTT
T ss_pred             -EEEECChHh-CCcCCCCCEEEECCChHhcCCHHHHH--------------------------------------HHHHH
Confidence             122346543 33389999999999999987644433                                      44678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++.........        ..  ..+...|.        .       .....+++.+++...+++.| |++.
T Consensus       129 ~LkpgG~l~~~~~~~~~~~--------~~--~~~~~~~~--------~-------~~~~~~~~~~~~~~~l~~aG-f~~~  182 (256)
T 1nkv_A          129 SLKPGGIMLIGEPYWRQLP--------AT--EEIAQACG--------V-------SSTSDFLTLPGLVGAFDDLG-YDVV  182 (256)
T ss_dssp             SEEEEEEEEEEEEEETTCC--------SS--HHHHHTTT--------C-------SCGGGSCCHHHHHHHHHTTT-BCCC
T ss_pred             HcCCCeEEEEecCcccCCC--------Ch--HHHHHHHh--------c-------ccccccCCHHHHHHHHHHCC-CeeE
Confidence            9999999999875442110        00  11111111        0       11235789999999999999 9877


Q ss_pred             EEEE
Q 016644          305 KLEV  308 (385)
Q Consensus       305 ~le~  308 (385)
                      .+..
T Consensus       183 ~~~~  186 (256)
T 1nkv_A          183 EMVL  186 (256)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6554

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.93  E-value=1.3e-08  Score=91.25  Aligned_cols=156  Identities=15%  Similarity=0.062  Sum_probs=93.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..+..+...                 ..+++.-|+........-+ ..              ..++  
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~~D~s~~~~~~a~~-~~--------------~~~~--   92 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL-----------------ADRVTALDGSAEMIAEAGR-HG--------------LDNV--   92 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH-----------------SSEEEEEESCHHHHHHHGG-GC--------------CTTE--
T ss_pred             CCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCHHHHHHHHh-cC--------------CCCe--
Confidence            459999999999988877522                 1477888874332222221 00              0122  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+.+++. .++|++++|+|+++.++||+.+ |                                   ++..+|+.-.+-
T Consensus        93 ~~~~~d~~-~~~~~~~~D~v~~~~~l~~~~~-~-----------------------------------~~~~~l~~~~~~  135 (218)
T 3ou2_A           93 EFRQQDLF-DWTPDRQWDAVFFAHWLAHVPD-D-----------------------------------RFEAFWESVRSA  135 (218)
T ss_dssp             EEEECCTT-SCCCSSCEEEEEEESCGGGSCH-H-----------------------------------HHHHHHHHHHHH
T ss_pred             EEEecccc-cCCCCCceeEEEEechhhcCCH-H-----------------------------------HHHHHHHHHHHH
Confidence            12233543 3489999999999999999754 1                                   134566777899


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcC---CcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEG---LITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG---~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      |+|||++++...++....              +...+.......   .+.  .-..+.....+++++|+...+++.| |+
T Consensus       136 L~pgG~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~aG-f~  198 (218)
T 3ou2_A          136 VAPGGVVEFVDVTDHERR--------------LEQQDDSEPEVAVRRTLQ--DGRSFRIVKVFRSPAELTERLTALG-WS  198 (218)
T ss_dssp             EEEEEEEEEEEECCCC--------------------------CEEEEECT--TSCEEEEECCCCCHHHHHHHHHHTT-EE
T ss_pred             cCCCeEEEEEeCCCCccc--------------cchhhhcccccceeeecC--CcchhhHhhcCCCHHHHHHHHHHCC-CE
Confidence            999999999998773110              111111100110   010  0001112244789999999999999 99


Q ss_pred             ecEEEEE
Q 016644          303 INKLEVF  309 (385)
Q Consensus       303 i~~le~~  309 (385)
                      ++..+..
T Consensus       199 v~~~~~~  205 (218)
T 3ou2_A          199 CSVDEVH  205 (218)
T ss_dssp             EEEEEEE
T ss_pred             EEeeecc
Confidence            7766653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.93  E-value=4.1e-09  Score=99.42  Aligned_cols=98  Identities=18%  Similarity=0.252  Sum_probs=66.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      .-+|+|+|||+|..|..+..        +         -.+|+-.|+-.....    ....             .+++ |
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~--------~---------~~~v~gvD~s~~ml~----~a~~-------------~~~v~~   85 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAE--------F---------FERVHAVDPGEAQIR----QALR-------------HPRVTY   85 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHT--------T---------CSEEEEEESCHHHHH----TCCC-------------CTTEEE
T ss_pred             CCCEEEEcCCCCHHHHHHHH--------h---------CCEEEEEeCcHHhhh----hhhh-------------cCCcee
Confidence            46899999999999887751        1         146788887432221    1111             1122 3


Q ss_pred             eccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..+   ++ +.+ +|++|+|+|+|+.++||+. .+.                                      ||+.-+
T Consensus        86 ~~~---~~-e~~~~~~~sfD~v~~~~~~h~~~-~~~--------------------------------------~~~e~~  122 (257)
T 4hg2_A           86 AVA---PA-EDTGLPPASVDVAIAAQAMHWFD-LDR--------------------------------------FWAELR  122 (257)
T ss_dssp             EEC---CT-TCCCCCSSCEEEEEECSCCTTCC-HHH--------------------------------------HHHHHH
T ss_pred             ehh---hh-hhhcccCCcccEEEEeeehhHhh-HHH--------------------------------------HHHHHH
Confidence            333   53 445 8999999999999999984 222                                      334467


Q ss_pred             hhhccCCeEEEEeccCC
Q 016644          224 KEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~  240 (385)
                      +-|||||+|++...+..
T Consensus       123 rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          123 RVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             HHEEEEEEEEEEEECCC
T ss_pred             HHcCCCCEEEEEECCCC
Confidence            88999999999887764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.92  E-value=4.7e-09  Score=96.14  Aligned_cols=142  Identities=16%  Similarity=0.166  Sum_probs=96.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      +.+|+|+|||+|..+..+..                 +..+|+..|+-.......-+.+...          ....++  
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~v--  117 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS-----------------PERFVVGLDISESALAKANETYGSS----------PKAEYF--  117 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB-----------------TTEEEEEECSCHHHHHHHHHHHTTS----------GGGGGE--
T ss_pred             CCCEEEeCCCCCHHHHHHHh-----------------CCCeEEEEECCHHHHHHHHHHhhcc----------CCCcce--
Confidence            46999999999999887641                 3478899998654444443333320          000111  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+-+++. .+.|++++|+|+++.++||+..  .                                  |...+|+.-++-
T Consensus       118 ~~~~~d~~-~~~~~~~fD~v~~~~~l~~~~~--~----------------------------------~~~~~l~~~~~~  160 (235)
T 3lcc_A          118 SFVKEDVF-TWRPTELFDLIFDYVFFCAIEP--E----------------------------------MRPAWAKSMYEL  160 (235)
T ss_dssp             EEECCCTT-TCCCSSCEEEEEEESSTTTSCG--G----------------------------------GHHHHHHHHHHH
T ss_pred             EEEECchh-cCCCCCCeeEEEEChhhhcCCH--H----------------------------------HHHHHHHHHHHH
Confidence            12333544 3557889999999999999851  1                                  133456677889


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecE
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINK  305 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~  305 (385)
                      |+|||+|++........                                    ...|.+..+.+++...+++.| |++..
T Consensus       161 LkpgG~l~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~l~~~G-f~~~~  203 (235)
T 3lcc_A          161 LKPDGELITLMYPITDH------------------------------------VGGPPYKVDVSTFEEVLVPIG-FKAVS  203 (235)
T ss_dssp             EEEEEEEEEEECCCSCC------------------------------------CSCSSCCCCHHHHHHHHGGGT-EEEEE
T ss_pred             CCCCcEEEEEEeccccc------------------------------------CCCCCccCCHHHHHHHHHHcC-CeEEE
Confidence            99999999877654210                                    012445578999999999999 99988


Q ss_pred             EEEEe
Q 016644          306 LEVFK  310 (385)
Q Consensus       306 le~~~  310 (385)
                      ++...
T Consensus       204 ~~~~~  208 (235)
T 3lcc_A          204 VEENP  208 (235)
T ss_dssp             EEECT
T ss_pred             EEecC
Confidence            88765

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.92  E-value=5.2e-09  Score=95.48  Aligned_cols=153  Identities=14%  Similarity=0.150  Sum_probs=94.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..+..+..        ..       +  +|+..|+........-+..+.              +--|.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~--------~~-------~--~v~gvD~s~~~~~~a~~~~~~--------------~v~~~   91 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQE--------HF-------N--DITCVEASEEAISHAQGRLKD--------------GITYI   91 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTT--------TC-------S--CEEEEESCHHHHHHHHHHSCS--------------CEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHH--------hC-------C--cEEEEeCCHHHHHHHHHhhhC--------------CeEEE
Confidence            46799999999998877641        11       3  677788754333333222221              11122


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH-h
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS-K  224 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra-~  224 (385)
                      .   +++ +.++|++++|+|+++.+||++.+.+                                      .+|+.-+ +
T Consensus        92 ~---~d~-~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~~  129 (250)
T 2p7i_A           92 H---SRF-EDAQLPRRYDNIVLTHVLEHIDDPV--------------------------------------ALLKRINDD  129 (250)
T ss_dssp             E---SCG-GGCCCSSCEEEEEEESCGGGCSSHH--------------------------------------HHHHHHHHT
T ss_pred             E---ccH-HHcCcCCcccEEEEhhHHHhhcCHH--------------------------------------HHHHHHHHH
Confidence            2   343 3457899999999999999986532                                      2345567 8


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccc-c---cccccccccCCHHHHHHHHHhcCc
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEK-R---DSFNIPVYASSLQEFKEVVEANGS  300 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~-~---d~f~~P~y~ps~~Ev~~~le~~gs  300 (385)
                      -|+|||+|+++.+....            +.. ....     ..|.+.... +   +.......+.+.+++...+++.| 
T Consensus       130 ~LkpgG~l~i~~~~~~~------------~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-  190 (250)
T 2p7i_A          130 WLAEGGRLFLVCPNANA------------VSR-QIAV-----KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG-  190 (250)
T ss_dssp             TEEEEEEEEEEEECTTC------------HHH-HHHH-----HTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT-
T ss_pred             hcCCCCEEEEEcCChHH------------HHH-HHHH-----HcCccccchhcccccccccccccCCHHHHHHHHHHCC-
Confidence            99999999998866531            001 1111     122222110 0   00111224579999999999999 


Q ss_pred             eEecEEEEEe
Q 016644          301 FVINKLEVFK  310 (385)
Q Consensus       301 F~i~~le~~~  310 (385)
                      |++.+.+.+.
T Consensus       191 f~~~~~~~~~  200 (250)
T 2p7i_A          191 LQVTYRSGIF  200 (250)
T ss_dssp             CEEEEEEEEE
T ss_pred             CeEEEEeeeE
Confidence            9998888654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.90  E-value=3.7e-09  Score=97.82  Aligned_cols=167  Identities=14%  Similarity=0.195  Sum_probs=96.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ..       + -+|+.-|+........-+.+..             .+--|
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~--------~~-------~-~~v~~vD~s~~~~~~a~~~~~~-------------~~~~~   94 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAE--------HG-------A-KKVLGIDLSERMLTEAKRKTTS-------------PVVCY   94 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH--------TT-------C-SEEEEEESCHHHHHHHHHHCCC-------------TTEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHH--------cC-------C-CEEEEEECCHHHHHHHHHhhcc-------------CCeEE
Confidence            468999999999998877752        11       2 2788889854333333333321             11112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .   .+++..--+|++++|+|+++.++||+.+..                                      .+|+.-++
T Consensus        95 ~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~  133 (253)
T 3g5l_A           95 E---QKAIEDIAIEPDAYNVVLSSLALHYIASFD--------------------------------------DICKKVYI  133 (253)
T ss_dssp             E---ECCGGGCCCCTTCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHHH
T ss_pred             E---EcchhhCCCCCCCeEEEEEchhhhhhhhHH--------------------------------------HHHHHHHH
Confidence            2   235443337889999999999999984422                                      34466788


Q ss_pred             hhccCCeEEEEeccCCCCCCC------CCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhc
Q 016644          225 EMKRCGSMFLVCLGRTSADPT------DQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEAN  298 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~------~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~  298 (385)
                      -|+|||+|+++..........      ...+....+      .|.....++.... ....-....|.+|.+|+.+.+++.
T Consensus       134 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~l~~a  206 (253)
T 3g5l_A          134 NLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHW------PVDRYFNESMRTS-HFLGEDVQKYHRTVTTYIQTLLKN  206 (253)
T ss_dssp             HEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEE------EECCTTCCCEEEE-EETTEEEEEECCCHHHHHHHHHHT
T ss_pred             HcCCCcEEEEEeCCCccccCccccceeccCCceEEE------EeccccccceEEE-eeccccCccEecCHHHHHHHHHHc
Confidence            999999999986543110000      000000000      0000001111100 001113456778999999999999


Q ss_pred             CceEecEEEEE
Q 016644          299 GSFVINKLEVF  309 (385)
Q Consensus       299 gsF~i~~le~~  309 (385)
                      | |++..++..
T Consensus       207 G-F~~~~~~e~  216 (253)
T 3g5l_A          207 G-FQINSVIEP  216 (253)
T ss_dssp             T-EEEEEEECC
T ss_pred             C-CeeeeeecC
Confidence            9 998877754

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.89  E-value=2.6e-08  Score=89.73  Aligned_cols=152  Identities=14%  Similarity=0.066  Sum_probs=94.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..                .+ .+++..|+........-+...                . +
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~----------------~~-~~~~~~D~~~~~~~~~~~~~~----------------~-~   77 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKE----------------NG-TRVSGIEAFPEAAEQAKEKLD----------------H-V   77 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHT----------------TT-CEEEEEESSHHHHHHHHTTSS----------------E-E
T ss_pred             CCCcEEEeCCCCCHHHHHHHh----------------cC-CeEEEEeCCHHHHHHHHHhCC----------------c-E
Confidence            457999999999998877641                12 578888874433222211111                1 1


Q ss_pred             eccccCcccc--ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYR--RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~--rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                         +.+++..  .-++++++|+|+++.++|++.+..                                      .+|+.-
T Consensus        78 ---~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~  116 (230)
T 3cc8_A           78 ---VLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPW--------------------------------------AVIEKV  116 (230)
T ss_dssp             ---EESCTTTCCCCSCTTCEEEEEEESCGGGSSCHH--------------------------------------HHHHHT
T ss_pred             ---EEcchhhcCCCCCCCccCEEEECChhhhcCCHH--------------------------------------HHHHHH
Confidence               2224332  236789999999999999986532                                      234556


Q ss_pred             HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccc-ccccccccCCHHHHHHHHHhcCce
Q 016644          223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRD-SFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d-~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      .+-|+|||++++.......            + ..+.    .+.... ....... .-.....+.+.+++.+.+++.| |
T Consensus       117 ~~~L~~gG~l~~~~~~~~~------------~-~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f  177 (230)
T 3cc8_A          117 KPYIKQNGVILASIPNVSH------------I-SVLA----PLLAGN-WTYTEYGLLDKTHIRFFTFNEMLRMFLKAG-Y  177 (230)
T ss_dssp             GGGEEEEEEEEEEEECTTS------------H-HHHH----HHHTTC-CCCBSSSTTBTTCCCCCCHHHHHHHHHHTT-E
T ss_pred             HHHcCCCCEEEEEeCCcch------------H-HHHH----HHhcCC-ceeccCCCCCcceEEEecHHHHHHHHHHcC-C
Confidence            7899999999998865421            1 1111    121111 1111000 0112345679999999999999 9


Q ss_pred             EecEEEEEe
Q 016644          302 VINKLEVFK  310 (385)
Q Consensus       302 ~i~~le~~~  310 (385)
                      ++.+++.+.
T Consensus       178 ~~~~~~~~~  186 (230)
T 3cc8_A          178 SISKVDRVY  186 (230)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEecc
Confidence            998888875

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.88  E-value=1.2e-08  Score=93.26  Aligned_cols=149  Identities=17%  Similarity=0.189  Sum_probs=95.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...                 ..+++.-|+........-+...             ..+--|
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~-------------~~~~~~  102 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT-----------------GYKAVGVDISEVMIQKGKERGE-------------GPDLSF  102 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-----------------TCEEEEEESCHHHHHHHHTTTC-------------BTTEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc-----------------CCeEEEEECCHHHHHHHHhhcc-------------cCCceE
Confidence            3579999999999988877521                 2478888874432222222211             011123


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++.+--+|++++|+|+++.++||+.+..                                      .+|+.-.+
T Consensus       103 ~~---~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~  141 (242)
T 3l8d_A          103 IK---GDLSSLPFENEQFEAIMAINSLEWTEEPL--------------------------------------RALNEIKR  141 (242)
T ss_dssp             EE---CBTTBCSSCTTCEEEEEEESCTTSSSCHH--------------------------------------HHHHHHHH
T ss_pred             EE---cchhcCCCCCCCccEEEEcChHhhccCHH--------------------------------------HHHHHHHH
Confidence            22   35444347899999999999999984422                                      23455678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+++++..+......              ...+..+           ..........+++++...+++.| |++.
T Consensus       142 ~L~pgG~l~i~~~~~~~~~~--------------~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~G-f~~~  195 (242)
T 3l8d_A          142 VLKSDGYACIAILGPTAKPR--------------ENSYPRL-----------YGKDVVCNTMMPWEFEQLVKEQG-FKVV  195 (242)
T ss_dssp             HEEEEEEEEEEEECTTCGGG--------------GGGGGGG-----------GTCCCSSCCCCHHHHHHHHHHTT-EEEE
T ss_pred             HhCCCeEEEEEEcCCcchhh--------------hhhhhhh-----------ccccccccCCCHHHHHHHHHHcC-CEEE
Confidence            99999999999977642100              0011100           11223556789999999999999 9988


Q ss_pred             EEEEEe
Q 016644          305 KLEVFK  310 (385)
Q Consensus       305 ~le~~~  310 (385)
                      ..+.+-
T Consensus       196 ~~~~~~  201 (242)
T 3l8d_A          196 DGIGVY  201 (242)
T ss_dssp             EEEEEE
T ss_pred             Eeeccc
Confidence            877543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.88  E-value=3.5e-08  Score=94.71  Aligned_cols=153  Identities=10%  Similarity=0.023  Sum_probs=94.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...        +        ..+|+.-|+........-+.+...         .-..+--|
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~--------~--------~~~v~gvD~s~~~~~~a~~~~~~~---------~~~~~v~~  171 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRR--------F--------GSRVEGVTLSAAQADFGNRRAREL---------RIDDHVRS  171 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHH--------H--------CCEEEEEESCHHHHHHHHHHHHHT---------TCTTTEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHH--------c--------CCEEEEEeCCHHHHHHHHHHHHHc---------CCCCceEE
Confidence            4579999999999999887632        1        257888887543332222221100         00001123


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++.+--+|++++|+|+|+.++||+.  +.                                     .+|+.-.+
T Consensus       172 ~~---~d~~~~~~~~~~fD~V~~~~~l~~~~--~~-------------------------------------~~l~~~~~  209 (312)
T 3vc1_A          172 RV---CNMLDTPFDKGAVTASWNNESTMYVD--LH-------------------------------------DLFSEHSR  209 (312)
T ss_dssp             EE---CCTTSCCCCTTCEEEEEEESCGGGSC--HH-------------------------------------HHHHHHHH
T ss_pred             EE---CChhcCCCCCCCEeEEEECCchhhCC--HH-------------------------------------HHHHHHHH
Confidence            33   35443337889999999999999983  22                                     23455688


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++............     .   . ....+...              ..| .+++.+++..++++.| |++.
T Consensus       210 ~LkpgG~l~~~~~~~~~~~~~~-----~---~-~~~~~~~~--------------~~~-~~~s~~~~~~~l~~aG-f~~~  264 (312)
T 3vc1_A          210 FLKVGGRYVTITGCWNPRYGQP-----S---K-WVSQINAH--------------FEC-NIHSRREYLRAMADNR-LVPH  264 (312)
T ss_dssp             HEEEEEEEEEEEEEECTTTCSC-----C---H-HHHHHHHH--------------HTC-CCCBHHHHHHHHHTTT-EEEE
T ss_pred             HcCCCcEEEEEEccccccccch-----h---H-HHHHHHhh--------------hcC-CCCCHHHHHHHHHHCC-CEEE
Confidence            9999999999887765321010     0   1 11111111              011 4789999999999999 9988


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      .++.+
T Consensus       265 ~~~~~  269 (312)
T 3vc1_A          265 TIVDL  269 (312)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            88765

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.86  E-value=7e-09  Score=92.85  Aligned_cols=158  Identities=11%  Similarity=0.123  Sum_probs=91.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      +.+|+|+|||+|..+..+..        .        +..+++.-|+-.......-+.+...          ....++ |
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~--------~--------~~~~v~~~D~s~~~~~~a~~~~~~~----------~~~~~~~~   97 (219)
T 3dlc_A           44 AGTCIDIGSGPGALSIALAK--------Q--------SDFSIRALDFSKHMNEIALKNIADA----------NLNDRIQI   97 (219)
T ss_dssp             EEEEEEETCTTSHHHHHHHH--------H--------SEEEEEEEESCHHHHHHHHHHHHHT----------TCTTTEEE
T ss_pred             CCEEEEECCCCCHHHHHHHH--------c--------CCCeEEEEECCHHHHHHHHHHHHhc----------cccCceEE
Confidence            34999999999998887752        1        3578898898543333332222110          001122 2


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++.+--+|++++|+|+++.++||+.+..                                      .+|+.-.+
T Consensus        98 ~~---~d~~~~~~~~~~~D~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~  136 (219)
T 3dlc_A           98 VQ---GDVHNIPIEDNYADLIVSRGSVFFWEDVA--------------------------------------TAFREIYR  136 (219)
T ss_dssp             EE---CBTTBCSSCTTCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHHH
T ss_pred             EE---cCHHHCCCCcccccEEEECchHhhccCHH--------------------------------------HHHHHHHH
Confidence            22   35444337899999999999999984422                                      24455678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++...-..               ..+...+........  ......+.......+.+++...+++.| |++.
T Consensus       137 ~L~pgG~l~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~v  198 (219)
T 3dlc_A          137 ILKSGGKTYIGGGFGN---------------KELRDSISAEMIRKN--PDWKEFNRKNISQENVERFQNVLDEIG-ISSY  198 (219)
T ss_dssp             HEEEEEEEEEEECCSS---------------HHHHHHHHHHHHHHC--TTHHHHHHHHSSHHHHHHHHHHHHHHT-CSSE
T ss_pred             hCCCCCEEEEEeccCc---------------HHHHHHHHHHHHHhH--HHHHhhhhhccccCCHHHHHHHHHHcC-CCeE
Confidence            9999999998753221               112222221111100  000001111223348899999999999 9876


Q ss_pred             EEEE
Q 016644          305 KLEV  308 (385)
Q Consensus       305 ~le~  308 (385)
                      ++..
T Consensus       199 ~~~~  202 (219)
T 3dlc_A          199 EIIL  202 (219)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6554

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.86  E-value=8.8e-08  Score=89.44  Aligned_cols=168  Identities=8%  Similarity=-0.010  Sum_probs=96.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC------chHHHHhcCCCCCCchhHhhhcC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN------DFNTLFQLLPPIGSSMEECLASD  138 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N------DFn~lF~~l~~~~~~~~~~~~~~  138 (385)
                      +..+|+|+|||+|..+..+...        +      .|..+|+.-|+...      .....-+.+...          .
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~--------~------g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~----------~   98 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQ--------V------GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG----------P   98 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHH--------H------CTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS----------T
T ss_pred             CCCEEEEeCCCCCHHHHHHHHH--------h------CCCCEEEEEECCccccccHHHHHHHHHHHHhc----------C
Confidence            4579999999999998877632        2      14478899998654      333332222110          0


Q ss_pred             cCCceeeccccCc-cc-ccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHH
Q 016644          139 THRSYFAAGVPGS-FY-RRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDL  215 (385)
Q Consensus       139 ~~~~~f~~~vpgS-Fy-~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~  215 (385)
                      -..++-  .+.++ +. ..+ ++++++|+|+|+.++|++.+... +                                  
T Consensus        99 ~~~~v~--~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~-~----------------------------------  141 (275)
T 3bkx_A           99 LGDRLT--VHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANA-L----------------------------------  141 (275)
T ss_dssp             TGGGEE--EECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHH-H----------------------------------
T ss_pred             CCCceE--EEECChhhhccCCCCCCCEEEEEEccchhhCCCHHH-H----------------------------------
Confidence            001221  12233 43 233 67899999999999999866322 2                                  


Q ss_pred             HHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHH
Q 016644          216 AAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVV  295 (385)
Q Consensus       216 ~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~l  295 (385)
                         ++...+-++|||++++.........+       ..    ....+..+.... +.....+.......+++++++.+.+
T Consensus       142 ---~~~~~~l~~~gG~l~~~~~~~~~~~~-------~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~l  206 (275)
T 3bkx_A          142 ---ALLFKNMAAVCDHVDVAEWSMQPTAL-------DQ----IGHLQAAMIQGL-LYAIAPSDVANIRTLITPDTLAQIA  206 (275)
T ss_dssp             ---HHHHHHHTTTCSEEEEEEECSSCSSG-------GG----HHHHHHHHHHHH-HHHHSCCTTCSCCCCCCHHHHHHHH
T ss_pred             ---HHHHHHHhCCCCEEEEEEecCCCCch-------hh----hhHHHHHHHHHH-HhhccccccccccccCCHHHHHHHH
Confidence               23334445569999998877642211       00    111111111110 0000001122345689999999999


Q ss_pred             HhcCceEecEEEEE
Q 016644          296 EANGSFVINKLEVF  309 (385)
Q Consensus       296 e~~gsF~i~~le~~  309 (385)
                      ++.| |++.+.+.+
T Consensus       207 ~~aG-f~~~~~~~~  219 (275)
T 3bkx_A          207 HDNT-WTYTAGTIV  219 (275)
T ss_dssp             HHHT-CEEEECCCB
T ss_pred             HHCC-CeeEEEEEe
Confidence            9999 998777765

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.85  E-value=3e-08  Score=89.35  Aligned_cols=145  Identities=16%  Similarity=0.199  Sum_probs=95.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..+..+....              .|..+++.-|+-.......-+.+..           ....++ 
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~   91 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMV--------------GEKGKVYAIDVQEEMVNYAWEKVNK-----------LGLKNVE   91 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHH--------------TTTCEEEEEESCHHHHHHHHHHHHH-----------HTCTTEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHh--------------CCCcEEEEEECCHHHHHHHHHHHHH-----------cCCCcEE
Confidence            45799999999999998886332              1457899999854333333222210           001122 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |.   .+++..--++++++|+|+++.++||+.+..                                      .+|+.-.
T Consensus        92 ~~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~  130 (219)
T 3dh0_A           92 VL---KSEENKIPLPDNTVDFIFMAFTFHELSEPL--------------------------------------KFLEELK  130 (219)
T ss_dssp             EE---ECBTTBCSSCSSCEEEEEEESCGGGCSSHH--------------------------------------HHHHHHH
T ss_pred             EE---ecccccCCCCCCCeeEEEeehhhhhcCCHH--------------------------------------HHHHHHH
Confidence            22   235444347899999999999999985422                                      3345567


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||++++...........                                  .......+.+++...+++.| |++
T Consensus       131 ~~LkpgG~l~i~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~l~~~G-f~~  175 (219)
T 3dh0_A          131 RVAKPFAYLAIIDWKKEERDKG----------------------------------PPPEEVYSEWEVGLILEDAG-IRV  175 (219)
T ss_dssp             HHEEEEEEEEEEEECSSCCSSS----------------------------------CCGGGSCCHHHHHHHHHHTT-CEE
T ss_pred             HHhCCCeEEEEEEecccccccC----------------------------------CchhcccCHHHHHHHHHHCC-CEE
Confidence            8999999999987665421000                                  01223458999999999999 998


Q ss_pred             cEEEEEe
Q 016644          304 NKLEVFK  310 (385)
Q Consensus       304 ~~le~~~  310 (385)
                      .+...+.
T Consensus       176 ~~~~~~~  182 (219)
T 3dh0_A          176 GRVVEVG  182 (219)
T ss_dssp             EEEEEET
T ss_pred             EEEEeeC
Confidence            7776653

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.84  E-value=2.3e-08  Score=89.93  Aligned_cols=141  Identities=15%  Similarity=0.121  Sum_probs=94.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...                 ..+++.-|+........-+.+.                .-+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~----------------~~~   89 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAA-----------------GFDVDATDGSPELAAEASRRLG----------------RPV   89 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHT-----------------TCEEEEEESCHHHHHHHHHHHT----------------SCC
T ss_pred             CCCcEEEECCCCCHHHHHHHHc-----------------CCeEEEECCCHHHHHHHHHhcC----------------Cce
Confidence            3579999999999988877521                 2578888875433332222211                011


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                         +-+++ ..+-+++++|+|+++.++|++..                                    .|+..+|+.-++
T Consensus        90 ---~~~d~-~~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~  129 (211)
T 3e23_A           90 ---RTMLF-HQLDAIDAYDAVWAHACLLHVPR------------------------------------DELADVLKLIWR  129 (211)
T ss_dssp             ---EECCG-GGCCCCSCEEEEEECSCGGGSCH------------------------------------HHHHHHHHHHHH
T ss_pred             ---EEeee-ccCCCCCcEEEEEecCchhhcCH------------------------------------HHHHHHHHHHHH
Confidence               22343 33448999999999999999751                                    134566777889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++.+......                                ..+.+...+.+.+.+++...+++.|.|++.
T Consensus       130 ~LkpgG~l~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~  177 (211)
T 3e23_A          130 ALKPGGLFYASYKSGEGE--------------------------------GRDKLARYYNYPSEEWLRARYAEAGTWASV  177 (211)
T ss_dssp             HEEEEEEEEEEEECCSSC--------------------------------EECTTSCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred             hcCCCcEEEEEEcCCCcc--------------------------------cccccchhccCCCHHHHHHHHHhCCCcEEE
Confidence            999999999987544211                                001122344678999999999999878888


Q ss_pred             EEEEEe
Q 016644          305 KLEVFK  310 (385)
Q Consensus       305 ~le~~~  310 (385)
                      .++...
T Consensus       178 ~~~~~~  183 (211)
T 3e23_A          178 AVESSE  183 (211)
T ss_dssp             EEEEEE
T ss_pred             EEEecc
Confidence            877664

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.83  E-value=3.1e-08  Score=91.25  Aligned_cols=146  Identities=13%  Similarity=0.105  Sum_probs=94.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+....                ..+|+.-|+-......+-+.+..             ..++ 
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~----------------~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~-  142 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL----------------YATTDLLEPVKHMLEEAKRELAG-------------MPVG-  142 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH----------------CSEEEEEESCHHHHHHHHHHTTT-------------SSEE-
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh----------------cCEEEEEeCCHHHHHHHHHHhcc-------------CCce-
Confidence            46899999999999888776321                13677778754443333333321             0111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++..--+|++++|+|+++.++|++++                                    .|+..+|+...+
T Consensus       143 -~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~  185 (254)
T 1xtp_A          143 -KFILASMETATLPPNTYDLIVIQWTAIYLTD------------------------------------ADFVKFFKHCQQ  185 (254)
T ss_dssp             -EEEESCGGGCCCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHH
T ss_pred             -EEEEccHHHCCCCCCCeEEEEEcchhhhCCH------------------------------------HHHHHHHHHHHH
Confidence             1122354443368899999999999999743                                    134556677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++........        ....                       ....+.++++.+++++.+++.| |++.
T Consensus       186 ~LkpgG~l~i~~~~~~~~--------~~~~-----------------------~~~~~~~~~~~~~~~~~l~~aG-f~~~  233 (254)
T 1xtp_A          186 ALTPNGYIFFKENCSTGD--------RFLV-----------------------DKEDSSLTRSDIHYKRLFNESG-VRVV  233 (254)
T ss_dssp             HEEEEEEEEEEEEBC--C--------CEEE-----------------------ETTTTEEEBCHHHHHHHHHHHT-CCEE
T ss_pred             hcCCCeEEEEEecCCCcc--------ccee-----------------------cccCCcccCCHHHHHHHHHHCC-CEEE
Confidence            999999999987543210        0000                       0112345679999999999999 9988


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      +.+..
T Consensus       234 ~~~~~  238 (254)
T 1xtp_A          234 KEAFQ  238 (254)
T ss_dssp             EEEEC
T ss_pred             Eeeec
Confidence            77764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.83  E-value=3.9e-08  Score=93.39  Aligned_cols=146  Identities=15%  Similarity=0.126  Sum_probs=90.6

Q ss_pred             ceEEeeeCCCC---CcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc
Q 016644           66 PFALADLGCSC---GNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS  142 (385)
Q Consensus        66 ~~~IaDlGCs~---G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~  142 (385)
                      ..+|+|+|||+   |..+..+.        +.+       |..+|+..|+........-+.+..            ..+-
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~--------~~~-------p~~~v~~vD~sp~~l~~Ar~~~~~------------~~~v  130 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQ--------SVN-------PDARVVYVDIDPMVLTHGRALLAK------------DPNT  130 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHH--------HHC-------TTCEEEEEESSHHHHHHHHHHHTT------------CTTE
T ss_pred             CCEEEEECCCCCCCChHHHHHH--------HhC-------CCCEEEEEECChHHHHHHHHhcCC------------CCCe
Confidence            46899999999   95433222        222       568999999854443333333321            0111


Q ss_pred             eeeccccCcccc-----------ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHH
Q 016644          143 YFAAGVPGSFYR-----------RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQF  211 (385)
Q Consensus       143 ~f~~~vpgSFy~-----------rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~  211 (385)
                      -|   +.+++.+           ..++.+++|+++++.+|||+++..                                 
T Consensus       131 ~~---~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~---------------------------------  174 (274)
T 2qe6_A          131 AV---FTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDV---------------------------------  174 (274)
T ss_dssp             EE---EECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTT---------------------------------
T ss_pred             EE---EEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHH---------------------------------
Confidence            23   3346543           235667999999999999997631                                 


Q ss_pred             HHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHH-HHcCCcccccccccccccccCCHHH
Q 016644          212 QTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDL-VQEGLITGEKRDSFNIPVYASSLQE  290 (385)
Q Consensus       212 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~m-v~eG~i~~e~~d~f~~P~y~ps~~E  290 (385)
                         ...+|+.-++-|+|||+|+++.+..+.  +           +.+.. +.++ ...|           .|.++++.+|
T Consensus       175 ---~~~~l~~~~~~L~pGG~l~i~~~~~~~--~-----------~~~~~-~~~~~~~~~-----------~~~~~~s~~e  226 (274)
T 2qe6_A          175 ---VDRVVGAYRDALAPGSYLFMTSLVDTG--L-----------PAQQK-LARITRENL-----------GEGWARTPEE  226 (274)
T ss_dssp             ---HHHHHHHHHHHSCTTCEEEEEEEBCSS--C-----------HHHHH-HHHHHHHHH-----------SCCCCBCHHH
T ss_pred             ---HHHHHHHHHHhCCCCcEEEEEEecCcc--h-----------HHHHH-HHHHHHhcC-----------CCCccCCHHH
Confidence               123445678889999999999987631  0           11221 2222 1112           3678899999


Q ss_pred             HHHHHHhcCceEecE
Q 016644          291 FKEVVEANGSFVINK  305 (385)
Q Consensus       291 v~~~le~~gsF~i~~  305 (385)
                      +.+.+  .| |++..
T Consensus       227 i~~~l--~G-~~l~~  238 (274)
T 2qe6_A          227 IERQF--GD-FELVE  238 (274)
T ss_dssp             HHHTT--TT-CEECT
T ss_pred             HHHHh--CC-CeEcc
Confidence            99999  46 88765

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.83  E-value=1.8e-07  Score=89.58  Aligned_cols=163  Identities=18%  Similarity=0.190  Sum_probs=95.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..+..+....                ..+|+.-|+-.......-+.+...          .-...+ 
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~v~  143 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF----------------DVNVIGLTLSKNQHARCEQVLASI----------DTNRSRQ  143 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH----------------CCEEEEEESCHHHHHHHHHHHHTS----------CCSSCEE
T ss_pred             CcCEEEEEcccchHHHHHHHHHC----------------CCEEEEEECCHHHHHHHHHHHHhc----------CCCCceE
Confidence            35799999999999888775322                247888887544433332222110          000111 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |.   .+++ ..+ | +++|+|+|+.++|++..  .                                  |+..+|+.-.
T Consensus       144 ~~---~~d~-~~~-~-~~fD~v~~~~~l~~~~~--~----------------------------------~~~~~l~~~~  181 (318)
T 2fk8_A          144 VL---LQGW-EDF-A-EPVDRIVSIEAFEHFGH--E----------------------------------NYDDFFKRCF  181 (318)
T ss_dssp             EE---ESCG-GGC-C-CCCSEEEEESCGGGTCG--G----------------------------------GHHHHHHHHH
T ss_pred             EE---ECCh-HHC-C-CCcCEEEEeChHHhcCH--H----------------------------------HHHHHHHHHH
Confidence            22   2343 333 4 89999999999999843  0                                  2344556678


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccc-cccCCHHHHHHHHHhcCceE
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIP-VYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~~Ev~~~le~~gsF~  302 (385)
                      +-|+|||++++..+..........  .+... ..-...+.+.+...          ..| .++|+.+++...+++.| |+
T Consensus       182 ~~LkpgG~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~~l~~aG-f~  247 (318)
T 2fk8_A          182 NIMPADGRMTVQSSVSYHPYEMAA--RGKKL-SFETARFIKFIVTE----------IFPGGRLPSTEMMVEHGEKAG-FT  247 (318)
T ss_dssp             HHSCTTCEEEEEEEECCCHHHHHT--TCHHH-HHHHHHHHHHHHHH----------TSTTCCCCCHHHHHHHHHHTT-CB
T ss_pred             HhcCCCcEEEEEEeccCCchhhhh--ccccc-cccccchhhHHHHh----------cCCCCcCCCHHHHHHHHHhCC-CE
Confidence            999999999999887742100000  00000 00011122222211          123 46689999999999999 99


Q ss_pred             ecEEEEE
Q 016644          303 INKLEVF  309 (385)
Q Consensus       303 i~~le~~  309 (385)
                      +..++.+
T Consensus       248 ~~~~~~~  254 (318)
T 2fk8_A          248 VPEPLSL  254 (318)
T ss_dssp             CCCCEEC
T ss_pred             EEEEEec
Confidence            8777654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.83  E-value=5.4e-08  Score=91.63  Aligned_cols=167  Identities=14%  Similarity=0.139  Sum_probs=98.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .        +..+++..|+........-+.+...          ....++ 
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~--------~--------~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~v-  116 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYER--------A--------GIGEYYGVDIAEVSINDARVRARNM----------KRRFKV-  116 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHH--------H--------TCSEEEEEESCHHHHHHHHHHHHTS----------CCSSEE-
T ss_pred             CCCeEEEECCCCCHHHHHHHH--------C--------CCCEEEEEECCHHHHHHHHHHHHhc----------CCCccE-
Confidence            457999999999998877541        1        2247888888654444333332210          000111 


Q ss_pred             eccccCccccccC-CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLF-PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLf-P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                       ..+-+++.+--+ +++++|+|+++.++||+-..+                                  .|...+|+.-+
T Consensus       117 -~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~----------------------------------~~~~~~l~~~~  161 (298)
T 1ri5_A          117 -FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTS----------------------------------ESLDIAQRNIA  161 (298)
T ss_dssp             -EEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSH----------------------------------HHHHHHHHHHH
T ss_pred             -EEEECCccccccCCCCCcCEEEECchhhhhcCCH----------------------------------HHHHHHHHHHH
Confidence             112234443334 689999999999999962211                                  24556778888


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHH-HcCC----------ccc---ccc-----cc-ccccc
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLV-QEGL----------ITG---EKR-----DS-FNIPV  283 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv-~eG~----------i~~---e~~-----d~-f~~P~  283 (385)
                      +-|+|||++++......                .+...+.... ...+          +..   .+.     +. -..|.
T Consensus       162 ~~LkpgG~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  225 (298)
T 1ri5_A          162 RHLRPGGYFIMTVPSRD----------------VILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIE  225 (298)
T ss_dssp             HTEEEEEEEEEEEECHH----------------HHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEE
T ss_pred             HhcCCCCEEEEEECCHH----------------HHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcc
Confidence            99999999999886542                1111111000 0000          000   000     00 02345


Q ss_pred             ccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          284 YASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       284 y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      ++.+++|+..++++.| |++.+.+.+.
T Consensus       226 ~~~~~~~l~~ll~~aG-f~~v~~~~~~  251 (298)
T 1ri5_A          226 YFVDFTRMVDGFKRLG-LSLVERKGFI  251 (298)
T ss_dssp             ECCCHHHHHHHHHTTT-EEEEEEEEHH
T ss_pred             cccCHHHHHHHHHHcC-CEEEEecCHH
Confidence            7889999999999999 9988777653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.81  E-value=2.9e-08  Score=94.46  Aligned_cols=213  Identities=15%  Similarity=0.140  Sum_probs=118.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...+              .+..+|+..|+-.......-+.+...        .....+--|
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~~v~~   93 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQEL--------------KPFEQIIGSDLSATMIKTAEVIKEGS--------PDTYKNVSF   93 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHS--------------SCCSEEEEEESCHHHHHHHHHHHHHC--------C-CCTTEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC--------------CCCCEEEEEeCCHHHHHHHHHHHHhc--------cCCCCceEE
Confidence            46899999999999988886321              14578899998554433332221100        000011123


Q ss_pred             eccccCccccccCCC------CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPT------RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAF  218 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~------~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~F  218 (385)
                      ..   +++.+--++.      +++|+|+|+.++||+ +.+                                      .+
T Consensus        94 ~~---~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~--------------------------------------~~  131 (299)
T 3g5t_A           94 KI---SSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFE--------------------------------------KF  131 (299)
T ss_dssp             EE---CCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CHH--------------------------------------HH
T ss_pred             EE---cCHHhCCccccccccCCCeeEEeHhhHHHHh-CHH--------------------------------------HH
Confidence            32   2433322555      899999999999999 422                                      23


Q ss_pred             HHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccccc-CCHHHHHHHHHh
Q 016644          219 LGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYA-SSLQEFKEVVEA  297 (385)
Q Consensus       219 L~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~-ps~~Ev~~~le~  297 (385)
                      |+.-.+-|+|||+|++...+.......          ..+...+..+....        ....|.+. |..+.+...+++
T Consensus       132 l~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~~~~~~~~~~~--------~~~~~~w~~p~~~~~~~~l~~  193 (299)
T 3g5t_A          132 QRSAYANLRKDGTIAIWGYADPIFPDY----------PEFDDLMIEVPYGK--------QGLGPYWEQPGRSRLRNMLKD  193 (299)
T ss_dssp             HHHHHHHEEEEEEEEEEEEEEEECTTC----------GGGTTHHHHHHHCT--------TTTGGGSCTTHHHHHHTTTTT
T ss_pred             HHHHHHhcCCCcEEEEEecCCccccCc----------HHHHHHHHHhccCc--------ccccchhhchhhHHHHHhhhc
Confidence            455678999999999977664311100          11233444433221        12235555 888889999999


Q ss_pred             cCc----eEecEEEEEeCCCCC----------cccCCCchhhhHHHHHHHHHHhhhhh-HHh--hhCh--HHHHHHHHH-
Q 016644          298 NGS----FVINKLEVFKGGSPL----------VVKQPDDAAEVGQALANSCRSVAGVL-VDA--HIGD--QLSEELFKR-  357 (385)
Q Consensus       298 ~gs----F~i~~le~~~~~~~~----------~~~~~~d~~~~~~~~a~~iRa~~ep~-l~~--hfg~--~i~delf~r-  357 (385)
                      .|.    |+-.+...|... .+          ..+-.......-..+..++|+|+.-. ...  .-++  ++++++.++ 
T Consensus       194 ~gfp~~~f~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~~~~~~~~~~~~~~~~~~~~~~~~~  272 (299)
T 3g5t_A          194 SHLDPELFHDIQVSYFCAE-DVRDKVKLHQHTKKPLLIRKQVTLVEFADYVRTWSAYHQWKQDPKNKDKEDVADWFIKES  272 (299)
T ss_dssp             CCCCTTTEEEEEEEEECGG-GGGCHHHHHHCSSCCCCCEEEECHHHHHHHHTTSHHHHHHHHCGGGTTSCCHHHHHHHHH
T ss_pred             cCCChHHcCcceEEEeccc-ccccccccccCCCCceeeeccccHHHHHHHHHHhHHHHHHHhcccCCchhhHHHHHHHHH
Confidence            882    344444444310 00          00000011124567888888887522 212  2233  778887777 


Q ss_pred             HHH
Q 016644          358 VER  360 (385)
Q Consensus       358 ~~~  360 (385)
                      +++
T Consensus       273 l~~  275 (299)
T 3g5t_A          273 LRR  275 (299)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            555

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.80  E-value=1.2e-08  Score=92.25  Aligned_cols=153  Identities=9%  Similarity=0.056  Sum_probs=91.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchh-Hhhh-cCcCCc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSME-ECLA-SDTHRS  142 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~-~~~~-~~~~~~  142 (385)
                      +..+|+|+|||+|.++..+.+        +         ..+|+--|+....-....+.......... ...+ ....+-
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~--------~---------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v   84 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSG--------Q---------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI   84 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHH--------H---------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred             CCCEEEEeCCCCcHhHHHHHH--------C---------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc
Confidence            457999999999999987752        1         25788888876665555443211000000 0000 000111


Q ss_pred             eeeccccCccccccCCC-CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          143 YFAAGVPGSFYRRLFPT-RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       143 ~f~~~vpgSFy~rLfP~-~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      -|..+   ++.+--+++ +++|+|++..++|++..   .                                 |...+|+.
T Consensus        85 ~~~~~---d~~~l~~~~~~~fD~v~~~~~l~~l~~---~---------------------------------~~~~~l~~  125 (203)
T 1pjz_A           85 EIWCG---DFFALTARDIGHCAAFYDRAAMIALPA---D---------------------------------MRERYVQH  125 (203)
T ss_dssp             EEEEE---CCSSSTHHHHHSEEEEEEESCGGGSCH---H---------------------------------HHHHHHHH
T ss_pred             EEEEC---ccccCCcccCCCEEEEEECcchhhCCH---H---------------------------------HHHHHHHH
Confidence            23333   544322444 79999999999999742   1                                 23455677


Q ss_pred             HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      -++-|+|||++++.......              .                     ...-|.+..+.+|+...++. | |
T Consensus       126 ~~r~LkpgG~~~l~~~~~~~--------------~---------------------~~~~~~~~~~~~el~~~~~~-g-f  168 (203)
T 1pjz_A          126 LEALMPQACSGLLITLEYDQ--------------A---------------------LLEGPPFSVPQTWLHRVMSG-N-W  168 (203)
T ss_dssp             HHHHSCSEEEEEEEEESSCS--------------S---------------------SSSSCCCCCCHHHHHHTSCS-S-E
T ss_pred             HHHHcCCCcEEEEEEEecCc--------------c---------------------ccCCCCCCCCHHHHHHHhcC-C-c
Confidence            78999999996555533210              0                     00123445789999999988 7 9


Q ss_pred             EecEEEEEe
Q 016644          302 VINKLEVFK  310 (385)
Q Consensus       302 ~i~~le~~~  310 (385)
                      ++..++..+
T Consensus       169 ~i~~~~~~~  177 (203)
T 1pjz_A          169 EVTKVGGQD  177 (203)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEecccc
Confidence            998888654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.79  E-value=8.5e-09  Score=98.95  Aligned_cols=172  Identities=12%  Similarity=0.148  Sum_probs=98.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .        +..+++..|+........-+.........   ......+--|
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~--------~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~~~~~~~~   94 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKK--------G--------RINKLVCTDIADVSVKQCQQRYEDMKNRR---DSEYIFSAEF   94 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHH--------T--------TCSEEEEEESCHHHHHHHHHHHHHHHSSS---CC-CCCEEEE
T ss_pred             CCCEEEEECCCCcHHHHHHHh--------c--------CCCEEEEEeCCHHHHHHHHHHHHHhhhcc---cccccceEEE
Confidence            457999999999999887652        1        24678888886544333322221000000   0000001113


Q ss_pred             eccccCcccccc----C--CCCcccEEEcccccccc-cCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL----F--PTRSIDFFHSAFSLHWL-SQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAA  217 (385)
Q Consensus       145 ~~~vpgSFy~rL----f--P~~Svd~~~Ss~alHWL-S~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~  217 (385)
                      ..+   +...-.    +  +++++|+|+|+.++||+ ...+                                   |...
T Consensus        95 ~~~---D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~-----------------------------------~~~~  136 (313)
T 3bgv_A           95 ITA---DSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYE-----------------------------------QADM  136 (313)
T ss_dssp             EEC---CTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHH-----------------------------------HHHH
T ss_pred             EEe---cccccchhhhcccCCCCEEEEEEecchhhccCCHH-----------------------------------HHHH
Confidence            222   432221    4  35699999999999998 3321                                   3446


Q ss_pred             HHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH--cC-------Ccccccc------------
Q 016644          218 FLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ--EG-------LITGEKR------------  276 (385)
Q Consensus       218 FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~--eG-------~i~~e~~------------  276 (385)
                      +|+.-++-|+|||+|++++++.+                .+.+.|...-.  -|       ..+.+++            
T Consensus       137 ~l~~~~~~LkpgG~li~~~~~~~----------------~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~  200 (313)
T 3bgv_A          137 MLRNACERLSPGGYFIGTTPNSF----------------ELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLE  200 (313)
T ss_dssp             HHHHHHTTEEEEEEEEEEEECHH----------------HHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC
T ss_pred             HHHHHHHHhCCCcEEEEecCChH----------------HHHHHHHhhccCccCCeeEEEEeCCCCCCCCccceEEEEEC
Confidence            67778899999999999998752                12222221100  00       0000000            


Q ss_pred             cccccccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          277 DSFNIPVYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       277 d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      .....|.|..+.+++.+++++.| |++...+.|.
T Consensus       201 ~~~~~~~~~~~~~~~~~l~~~~G-~~~v~~~~f~  233 (313)
T 3bgv_A          201 GVVDVPEFLVYFPLLNEMAKKYN-MKLVYKKTFL  233 (313)
T ss_dssp             ---CCEEECCCHHHHHHHGGGGT-EEEEEEEEHH
T ss_pred             CcccCcceEEcHHHHHHHHHHcC-cEEEEecCHH
Confidence            23356778889999999999999 9988877664

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.77  E-value=1.2e-07  Score=92.62  Aligned_cols=152  Identities=16%  Similarity=0.177  Sum_probs=94.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.+        ++       |..+++.-|+|..    +-+....  ..       ....++ 
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~~~----~~~~~~~--~~-------~~~~~v-  234 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLR--------EH-------PGLQGVLLDRAEV----VARHRLD--AP-------DVAGRW-  234 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHH--------HC-------TTEEEEEEECHHH----HTTCCCC--CG-------GGTTSE-
T ss_pred             CCceEEEECCccCHHHHHHHH--------HC-------CCCEEEEecCHHH----hhccccc--cc-------CCCCCe-
Confidence            468999999999998887763        23       6788899998531    1111100  00       001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.++|+ .-+|  ++|+++++.+||++++.                                    +...+|+.-++
T Consensus       235 -~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~------------------------------------~~~~~L~~~~~  274 (348)
T 3lst_A          235 -KVVEGDFL-REVP--HADVHVLKRILHNWGDE------------------------------------DSVRILTNCRR  274 (348)
T ss_dssp             -EEEECCTT-TCCC--CCSEEEEESCGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             -EEEecCCC-CCCC--CCcEEEEehhccCCCHH------------------------------------HHHHHHHHHHH
Confidence             23556887 4456  99999999999975431                                    23356677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++.-...+...       ...+ ....+ +.-+...             .-..++.+|+.+++++.| |++.
T Consensus       275 ~LkpgG~l~i~e~~~~~~~-------~~~~-~~~~d-~~~~~~~-------------~~~~~t~~e~~~ll~~aG-f~~~  331 (348)
T 3lst_A          275 VMPAHGRVLVIDAVVPEGN-------DAHQ-SKEMD-FMMLAAR-------------TGQERTAAELEPLFTAAG-LRLD  331 (348)
T ss_dssp             TCCTTCEEEEEECCBCSSS-------SCCH-HHHHH-HHHHHTT-------------SCCCCBHHHHHHHHHHTT-EEEE
T ss_pred             hcCCCCEEEEEEeccCCCC-------Ccch-hhhcC-hhhhhcC-------------CCcCCCHHHHHHHHHHCC-CceE
Confidence            9999999988765443210       0111 11111 1112111             123578999999999999 9987


Q ss_pred             EEEE
Q 016644          305 KLEV  308 (385)
Q Consensus       305 ~le~  308 (385)
                      ++..
T Consensus       332 ~~~~  335 (348)
T 3lst_A          332 RVVG  335 (348)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.77  E-value=6e-08  Score=87.18  Aligned_cols=157  Identities=16%  Similarity=0.166  Sum_probs=92.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ++.+|+|+|||+|.++..+...                 ..+++.-|+........-+. ..               .-+
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~-~~---------------~~~   98 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR-----------------GIEAVGVDGDRTLVDAARAA-GA---------------GEV   98 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT-----------------TCEEEEEESCHHHHHHHHHT-CS---------------SCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC-----------------CCEEEEEcCCHHHHHHHHHh-cc---------------ccc
Confidence            3589999999999988776521                 24788888754333222222 10               112


Q ss_pred             eccccCcccc-ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYR-RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~-rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..+--..+-. ...+.+++|+|+++.++| ..+..                                      .+|+.-+
T Consensus        99 ~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~--------------------------------------~~l~~~~  139 (227)
T 3e8s_A           99 HLASYAQLAEAKVPVGKDYDLICANFALL-HQDII--------------------------------------ELLSAMR  139 (227)
T ss_dssp             EECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCCH--------------------------------------HHHHHHH
T ss_pred             chhhHHhhcccccccCCCccEEEECchhh-hhhHH--------------------------------------HHHHHHH
Confidence            2221111111 124555699999999999 33322                                      2445678


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||+|++............   ....|.   ...|     .+...    .-...+.++++.+|+...+++.| |++
T Consensus       140 ~~L~pgG~l~~~~~~~~~~~~~~---~~~~~~---~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~l~~aG-f~~  203 (227)
T 3e8s_A          140 TLLVPGGALVIQTLHPWSVADGD---YQDGWR---EESF-----AGFAG----DWQPMPWYFRTLASWLNALDMAG-LRL  203 (227)
T ss_dssp             HTEEEEEEEEEEECCTTTTCTTC---CSCEEE---EECC-----TTSSS----CCCCEEEEECCHHHHHHHHHHTT-EEE
T ss_pred             HHhCCCeEEEEEecCccccCccc---cccccc---hhhh-----hcccc----CcccceEEEecHHHHHHHHHHcC-CeE
Confidence            89999999999998774321110   000000   0000     00000    01246778999999999999999 999


Q ss_pred             cEEEEE
Q 016644          304 NKLEVF  309 (385)
Q Consensus       304 ~~le~~  309 (385)
                      .+++..
T Consensus       204 ~~~~~~  209 (227)
T 3e8s_A          204 VSLQEP  209 (227)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            887753

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.77  E-value=9.7e-08  Score=86.59  Aligned_cols=92  Identities=16%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEe
Q 016644          157 FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVC  236 (385)
Q Consensus       157 fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~  236 (385)
                      ++++++|+|+++.++||+.+..                                      .+|+.-.+-|+|||++++..
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A           98 LKDESFDFALMVTTICFVDDPE--------------------------------------RALKEAYRILKKGGYLIVGI  139 (219)
T ss_dssp             SCTTCEEEEEEESCGGGSSCHH--------------------------------------HHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCeeEEEEcchHhhccCHH--------------------------------------HHHHHHHHHcCCCcEEEEEE
Confidence            6788999999999999985422                                      23455678899999999988


Q ss_pred             ccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          237 LGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       237 ~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      ..+.+           .    ....+..+ ..+       ..+.....+.+.+++...+++.| |++.++....
T Consensus       140 ~~~~~-----------~----~~~~~~~~-~~~-------~~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~~  189 (219)
T 1vlm_A          140 VDRES-----------F----LGREYEKN-KEK-------SVFYKNARFFSTEELMDLMRKAG-FEEFKVVQTL  189 (219)
T ss_dssp             ECSSS-----------H----HHHHHHHT-TTC--------CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEEEC
T ss_pred             eCCcc-----------H----HHHHHHHH-hcC-------cchhcccccCCHHHHHHHHHHCC-CeEEEEeccc
Confidence            76531           1    12222222 111       12333456789999999999999 9988877654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.75  E-value=2.4e-08  Score=94.66  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=64.9

Q ss_pred             CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEe
Q 016644          157 FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVC  236 (385)
Q Consensus       157 fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~  236 (385)
                      +|++++|+|+|+.+|||+....                                  .|+..+|+.-++-|+|||+|++..
T Consensus       170 ~~~~~fD~V~~~~~l~~~~~~~----------------------------------~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          170 PAPLPADALVSAFCLEAVSPDL----------------------------------ASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             SSCSSEEEEEEESCHHHHCSSH----------------------------------HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCCCCCEEEehhhhhhhcCCH----------------------------------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6778899999999999975421                                  134566777899999999999974


Q ss_pred             ccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeC
Q 016644          237 LGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKG  311 (385)
Q Consensus       237 ~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~  311 (385)
                      .-..           ..+ .           .|        ....+.++.+.+|+.+.+++.| |++..++.+..
T Consensus       216 ~~~~-----------~~~-~-----------~~--------~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~~  258 (289)
T 2g72_A          216 ALEE-----------SWY-L-----------AG--------EARLTVVPVSEEEVREALVRSG-YKVRDLRTYIM  258 (289)
T ss_dssp             EESC-----------CEE-E-----------ET--------TEEEECCCCCHHHHHHHHHHTT-EEEEEEEEEEC
T ss_pred             ecCc-----------ceE-E-----------cC--------CeeeeeccCCHHHHHHHHHHcC-CeEEEeeEeec
Confidence            2211           001 0           01        1123567889999999999999 99999888764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.73  E-value=3.5e-08  Score=94.42  Aligned_cols=173  Identities=11%  Similarity=-0.014  Sum_probs=100.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...              ..|..+|+.-|+-.......-+.+...          .-..++ 
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~--------------~~~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~v-  172 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYS--------------ACPGVQLVGIDYDPEALDGATRLAAGH----------ALAGQI-  172 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCT--------------TCTTCEEEEEESCHHHHHHHHHHHTTS----------TTGGGE-
T ss_pred             CCCEEEEecCCCCHHHHHHHHh--------------cCCCCeEEEEECCHHHHHHHHHHHHhc----------CCCCce-
Confidence            4578999999999988776310              125678999998554444443333321          000112 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++.+--++ +++|+|+++.++||+.+...                                   ...||+.-.+
T Consensus       173 -~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~-----------------------------------~~~~l~~~~~  215 (305)
T 3ocj_A          173 -TLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDAR-----------------------------------VTELYRRFWQ  215 (305)
T ss_dssp             -EEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHH-----------------------------------HHHHHHHHHH
T ss_pred             -EEEECchhcCCcc-CCeEEEEECChhhhcCCHHH-----------------------------------HHHHHHHHHH
Confidence             1233465554456 99999999999999755221                                   2345667789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++....+...........-..+..........+...+ +.       ..-..+++.+|+...+++.| |++.
T Consensus       216 ~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~l~~aG-F~~v  286 (305)
T 3ocj_A          216 ALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRL-IQ-------PRWNALRTHAQTRAQLEEAG-FTDL  286 (305)
T ss_dssp             HEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHT-TC-------CSCCCCCCHHHHHHHHHHTT-CEEE
T ss_pred             hcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHH-Hh-------hhhhccCCHHHHHHHHHHCC-CEEE
Confidence            999999999999887543221111000000000011111111111 00       01124679999999999999 9987


Q ss_pred             EEEE
Q 016644          305 KLEV  308 (385)
Q Consensus       305 ~le~  308 (385)
                      +++.
T Consensus       287 ~~~~  290 (305)
T 3ocj_A          287 RFED  290 (305)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7764

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.73  E-value=1.7e-08  Score=92.85  Aligned_cols=148  Identities=12%  Similarity=0.073  Sum_probs=95.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.+..                ..+++..|+-.......-+.+...          .....-|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~  132 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL----------------FREVDMVDITEDFLVQAKTYLGEE----------GKRVRNY  132 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT----------------CSEEEEEESCHHHHHHHHHHTGGG----------GGGEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc----------------CCEEEEEeCCHHHHHHHHHHhhhc----------CCceEEE
Confidence            46799999999999888765211                247888887554444443333310          0001112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .   -+++..-.++++++|+|+++.++|++.+ |                                   ++..+|+.-.+
T Consensus       133 ~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~-----------------------------------~~~~~l~~~~~  173 (241)
T 2ex4_A          133 F---CCGLQDFTPEPDSYDVIWIQWVIGHLTD-Q-----------------------------------HLAEFLRRCKG  173 (241)
T ss_dssp             E---ECCGGGCCCCSSCEEEEEEESCGGGSCH-H-----------------------------------HHHHHHHHHHH
T ss_pred             E---EcChhhcCCCCCCEEEEEEcchhhhCCH-H-----------------------------------HHHHHHHHHHH
Confidence            2   2354443467789999999999999754 1                                   23456677789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++.......         +..+ .                     . .-..+.++.+++.+.+++.| |++.
T Consensus       174 ~LkpgG~l~i~~~~~~~---------~~~~-~---------------------~-~~~~~~~~~~~~~~~l~~aG-f~~~  220 (241)
T 2ex4_A          174 SLRPNGIIVIKDNMAQE---------GVIL-D---------------------D-VDSSVCRDLDVVRRIICSAG-LSLL  220 (241)
T ss_dssp             HEEEEEEEEEEEEEBSS---------SEEE-E---------------------T-TTTEEEEBHHHHHHHHHHTT-CCEE
T ss_pred             hcCCCeEEEEEEccCCC---------ccee-c---------------------c-cCCcccCCHHHHHHHHHHcC-CeEE
Confidence            99999999998766532         0111 0                     0 01234569999999999999 9988


Q ss_pred             EEEEEe
Q 016644          305 KLEVFK  310 (385)
Q Consensus       305 ~le~~~  310 (385)
                      +.+...
T Consensus       221 ~~~~~~  226 (241)
T 2ex4_A          221 AEERQE  226 (241)
T ss_dssp             EEEECC
T ss_pred             EeeecC
Confidence            877654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.73  E-value=2.6e-07  Score=91.13  Aligned_cols=154  Identities=19%  Similarity=0.201  Sum_probs=95.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..+..+.+        ++       |..+++.-|+|.     .......             ..++ 
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~~-----~~~~a~~-------------~~~v-  248 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVA--------KY-------PSINAINFDLPH-----VIQDAPA-------------FSGV-  248 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHH--------HC-------TTCEEEEEECHH-----HHTTCCC-------------CTTE-
T ss_pred             CCCEEEEeCCCcCHHHHHHHH--------hC-------CCCEEEEEehHH-----HHHhhhh-------------cCCC-
Confidence            458999999999999888873        33       678889999852     2221111             0122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.|+|++ -+|++  |+++++.+||++++.                                    +...+|+.-++
T Consensus       249 -~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~------------------------------------~~~~~l~~~~~  288 (368)
T 3reo_A          249 -EHLGGDMFD-GVPKG--DAIFIKWICHDWSDE------------------------------------HCLKLLKNCYA  288 (368)
T ss_dssp             -EEEECCTTT-CCCCC--SEEEEESCGGGBCHH------------------------------------HHHHHHHHHHH
T ss_pred             -EEEecCCCC-CCCCC--CEEEEechhhcCCHH------------------------------------HHHHHHHHHHH
Confidence             235678887 46765  999999999965431                                    23456677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++.-.-.+... .    . ... . -...+.++..-..         ...-..++.+|+++++++.| |++.
T Consensus       289 ~L~pgG~l~i~e~~~~~~~-~----~-~~~-~-~~~~~~d~~~~~~---------~~~g~~rt~~e~~~ll~~AG-F~~v  350 (368)
T 3reo_A          289 ALPDHGKVIVAEYILPPSP-D----P-SIA-T-KVVIHTDALMLAY---------NPGGKERTEKEFQALAMASG-FRGF  350 (368)
T ss_dssp             HSCTTCEEEEEECCCCSSC-C----C-CHH-H-HHHHHHHHHHHHH---------SSBCCCCCHHHHHHHHHHTT-CCEE
T ss_pred             HcCCCCEEEEEEeccCCCC-C----C-chh-h-hHHHhhhHHHHhh---------cCCCccCCHHHHHHHHHHCC-Ceee
Confidence            9999999988755443211 0    0 000 1 1112223211100         01123468999999999999 9887


Q ss_pred             EEEEEe
Q 016644          305 KLEVFK  310 (385)
Q Consensus       305 ~le~~~  310 (385)
                      ++....
T Consensus       351 ~~~~~~  356 (368)
T 3reo_A          351 KVASCA  356 (368)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            766543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.71  E-value=5.1e-07  Score=88.95  Aligned_cols=154  Identities=19%  Similarity=0.179  Sum_probs=96.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..+..+.+        ++       |..+++.-|+|.     .......             ..++ 
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~~-----~~~~a~~-------------~~~v-  246 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAA--------HY-------PTIKGVNFDLPH-----VISEAPQ-------------FPGV-  246 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHH--------HC-------TTCEEEEEECHH-----HHTTCCC-------------CTTE-
T ss_pred             CCCEEEEeCCCCCHHHHHHHH--------HC-------CCCeEEEecCHH-----HHHhhhh-------------cCCe-
Confidence            458999999999998888763        33       678889999852     2221111             1122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       .-+.++|++ =+|.+  |+++++++||.+++                                    +|...+|+.-++
T Consensus       247 -~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~  286 (364)
T 3p9c_A          247 -THVGGDMFK-EVPSG--DTILMKWILHDWSD------------------------------------QHCATLLKNCYD  286 (364)
T ss_dssp             -EEEECCTTT-CCCCC--SEEEEESCGGGSCH------------------------------------HHHHHHHHHHHH
T ss_pred             -EEEeCCcCC-CCCCC--CEEEehHHhccCCH------------------------------------HHHHHHHHHHHH
Confidence             235679887 56765  99999999996532                                    123456777889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++.-...++.. .    .....   ....+.++..-.         ....-..++.+|+++++++.| |++.
T Consensus       287 ~L~pgG~l~i~e~~~~~~~-~----~~~~~---~~~~~~d~~m~~---------~~~~g~~rt~~e~~~ll~~AG-F~~v  348 (364)
T 3p9c_A          287 ALPAHGKVVLVQCILPVNP-E----ANPSS---QGVFHVDMIMLA---------HNPGGRERYEREFQALARGAG-FTGV  348 (364)
T ss_dssp             HSCTTCEEEEEECCBCSSC-C----SSHHH---HHHHHHHHHHHH---------HCSSCCCCBHHHHHHHHHHTT-CCEE
T ss_pred             HcCCCCEEEEEEeccCCCC-C----cchhh---hhHHHhHHHHHh---------cccCCccCCHHHHHHHHHHCC-CceE
Confidence            9999999988755443210 0    01111   111222221110         001123468999999999999 9987


Q ss_pred             EEEEEe
Q 016644          305 KLEVFK  310 (385)
Q Consensus       305 ~le~~~  310 (385)
                      ++....
T Consensus       349 ~~~~~~  354 (364)
T 3p9c_A          349 KSTYIY  354 (364)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            776543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.70  E-value=2.3e-07  Score=90.21  Aligned_cols=155  Identities=14%  Similarity=0.113  Sum_probs=95.3

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..+..+.+        ++       |..+++.-|+|. .....-+.+...          .-..+  +
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~~-~~~~a~~~~~~~----------~~~~~--v  231 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLR--------RH-------PQLTGQIWDLPT-TRDAARKTIHAH----------DLGGR--V  231 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHH--------HC-------TTCEEEEEECGG-GHHHHHHHHHHT----------TCGGG--E
T ss_pred             CCEEEEeCCCcCHHHHHHHH--------hC-------CCCeEEEEECHH-HHHHHHHHHHhc----------CCCCc--e
Confidence            68999999999998887763        33       568888889953 333222221100          00011  2


Q ss_pred             ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..+.++|.+.- ++++++|+++++.++|++++.                                    +...+|+.-++
T Consensus       232 ~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~------------------------------------~~~~~l~~~~~  275 (352)
T 3mcz_A          232 EFFEKNLLDARNFEGGAADVVMLNDCLHYFDAR------------------------------------EAREVIGHAAG  275 (352)
T ss_dssp             EEEECCTTCGGGGTTCCEEEEEEESCGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             EEEeCCcccCcccCCCCccEEEEecccccCCHH------------------------------------HHHHHHHHHHH
Confidence            23556877543 366779999999999986431                                    23456677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++.-...++..      . ...    ...+.++..--..         .-...++.+|+++++++.| |++.
T Consensus       276 ~L~pgG~l~i~e~~~~~~~------~-~~~----~~~~~~~~~~~~~---------~~~~~~t~~e~~~ll~~aG-f~~~  334 (352)
T 3mcz_A          276 LVKPGGALLILTMTMNDDR------V-TPA----LSADFSLHMMVNT---------NHGELHPTPWIAGVVRDAG-LAVG  334 (352)
T ss_dssp             TEEEEEEEEEEEECCCTTS------S-SSH----HHHHHHHHHHHHS---------TTCCCCCHHHHHHHHHHTT-CEEE
T ss_pred             HcCCCCEEEEEEeccCCCC------C-CCc----hHHHhhHHHHhhC---------CCCCcCCHHHHHHHHHHCC-Ccee
Confidence            9999999998766553221      0 111    1222222110000         0122468999999999999 9887


Q ss_pred             E
Q 016644          305 K  305 (385)
Q Consensus       305 ~  305 (385)
                      +
T Consensus       335 ~  335 (352)
T 3mcz_A          335 E  335 (352)
T ss_dssp             E
T ss_pred             e
Confidence            6

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.70  E-value=6.8e-07  Score=86.39  Aligned_cols=153  Identities=15%  Similarity=0.102  Sum_probs=94.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.+        .+       |..+++.-|+| ......-+.+..          ..-..++ 
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~-~~~~~a~~~~~~----------~~~~~~v-  221 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLT--------AH-------EDLSGTVLDLQ-GPASAAHRRFLD----------TGLSGRA-  221 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHH--------HC-------TTCEEEEEECH-HHHHHHHHHHHH----------TTCTTTE-
T ss_pred             CCCEEEEeCCChhHHHHHHHH--------HC-------CCCeEEEecCH-HHHHHHHHhhhh----------cCcCcCe-
Confidence            458999999999988877663        33       56778888994 333332222210          0001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.++|++ -+|. ++|++++..+||.+++.                                    +...+|+.-++
T Consensus       222 -~~~~~d~~~-~~p~-~~D~v~~~~vlh~~~~~------------------------------------~~~~~l~~~~~  262 (332)
T 3i53_A          222 -QVVVGSFFD-PLPA-GAGGYVLSAVLHDWDDL------------------------------------SAVAILRRCAE  262 (332)
T ss_dssp             -EEEECCTTS-CCCC-SCSEEEEESCGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             -EEecCCCCC-CCCC-CCcEEEEehhhccCCHH------------------------------------HHHHHHHHHHH
Confidence             235568874 3566 89999999999975431                                    23456677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++.-.-.++.  .      ...   ..+. .-|...             .-..++.+|+.+++++.| |++.
T Consensus       263 ~L~pgG~l~i~e~~~~~~--~------~~~---~~d~-~~~~~~-------------~~~~~t~~e~~~ll~~aG-f~~~  316 (332)
T 3i53_A          263 AAGSGGVVLVIEAVAGDE--H------AGT---GMDL-RMLTYF-------------GGKERSLAELGELAAQAG-LAVR  316 (332)
T ss_dssp             HHTTTCEEEEEECCCC-----------CCH---HHHH-HHHHHH-------------SCCCCCHHHHHHHHHHTT-EEEE
T ss_pred             hcCCCCEEEEEeecCCCC--C------ccH---HHHH-HHHhhC-------------CCCCCCHHHHHHHHHHCC-CEEE
Confidence            999999999876544322  0      000   1111 112111             123578999999999999 9987


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      ++...
T Consensus       317 ~~~~~  321 (332)
T 3i53_A          317 AAHPI  321 (332)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            76643

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.68  E-value=7.6e-08  Score=90.25  Aligned_cols=162  Identities=13%  Similarity=0.046  Sum_probs=96.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCc-eeEEecCCCCCchHHHHhcCCC----CCCch-hHhhh--
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPE-FSAFFSDLPSNDFNTLFQLLPP----IGSSM-EECLA--  136 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~-~qv~~nDLp~NDFn~lF~~l~~----~~~~~-~~~~~--  136 (385)
                      +..+|+|+|||+|..++.+..                 +. -+|+..|+..+....+-+.+..    +.-+. -.+..  
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~-----------------~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~  117 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAAC-----------------DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL  117 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGG-----------------GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHH-----------------hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhc
Confidence            458899999999988776541                 12 3688888876665554332211    00000 00000  


Q ss_pred             -cCc----------CCceeeccccCcccccc-C---CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCH
Q 016644          137 -SDT----------HRSYFAAGVPGSFYRRL-F---PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANE  201 (385)
Q Consensus       137 -~~~----------~~~~f~~~vpgSFy~rL-f---P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~  201 (385)
                       ...          ...+ ...+.++..+.. +   +.+++|+|+|+.+|||+...++                      
T Consensus       118 ~~~~~~~~~~~~~~~~~i-~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~----------------------  174 (263)
T 2a14_A          118 EGNSGRWEEKEEKLRAAV-KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLD----------------------  174 (263)
T ss_dssp             TTCGGGHHHHHHHHHHHE-EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHH----------------------
T ss_pred             CCCCcchhhHHHHHHhhh-heEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHH----------------------
Confidence             000          0000 001223433311 2   3579999999999999754322                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccc
Q 016644          202 HTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNI  281 (385)
Q Consensus       202 ~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~  281 (385)
                                  |+...|+.-++-|||||+|+++.....+           .+ .           .|        ....
T Consensus       175 ------------~~~~~l~~i~r~LKPGG~li~~~~~~~~-----------~~-~-----------~g--------~~~~  211 (263)
T 2a14_A          175 ------------AYRAALCNLASLLKPGGHLVTTVTLRLP-----------SY-M-----------VG--------KREF  211 (263)
T ss_dssp             ------------HHHHHHHHHHTTEEEEEEEEEEEESSCC-----------EE-E-----------ET--------TEEE
T ss_pred             ------------HHHHHHHHHHHHcCCCcEEEEEEeecCc-----------cc-e-----------eC--------CeEe
Confidence                        3555667788999999999998643310           01 0           11        0123


Q ss_pred             ccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          282 PVYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       282 P~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      +.+..+.+|+...+++.| |++..++.+.
T Consensus       212 ~~~~~~~~~l~~~l~~aG-F~i~~~~~~~  239 (263)
T 2a14_A          212 SCVALEKGEVEQAVLDAG-FDIEQLLHSP  239 (263)
T ss_dssp             ECCCCCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred             eccccCHHHHHHHHHHCC-CEEEEEeecc
Confidence            455679999999999999 9998888764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.68  E-value=7.4e-08  Score=94.77  Aligned_cols=160  Identities=13%  Similarity=0.163  Sum_probs=96.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..+..+.+        ++       |..+++.-|+| ......-+.+...          .-..+  
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~-~~~~~a~~~~~~~----------~~~~~--  230 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQ--------YN-------KEVEVTIVDLP-QQLEMMRKQTAGL----------SGSER--  230 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHH--------HS-------TTCEEEEEECH-HHHHHHHHHHTTC----------TTGGG--
T ss_pred             CCCEEEEeCCCcCHHHHHHHH--------hC-------CCCEEEEEeCH-HHHHHHHHHHHhc----------Ccccc--
Confidence            457999999999999888763        33       67899999995 2333333333210          00012  


Q ss_pred             eccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +..+.++|++.-  +| +++|+++++.+||.+++                                    .+...+|+.-
T Consensus       231 v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~  273 (363)
T 3dp7_A          231 IHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSE------------------------------------EEVISILTRV  273 (363)
T ss_dssp             EEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCH------------------------------------HHHHHHHHHH
T ss_pred             eEEEEccccccCCCCC-CCcCEEEEechhhhCCH------------------------------------HHHHHHHHHH
Confidence            223566887642  56 89999999999986432                                    1234566778


Q ss_pred             HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      ++-|+|||++++.-...+..     ......+ . +......|...          ....-..++.+|+++++++.| |+
T Consensus       274 ~~~L~pgG~l~i~e~~~~~~-----~~~~~~~-~-~~~~~~~~~~~----------~~~~~~~~t~~e~~~ll~~AG-f~  335 (363)
T 3dp7_A          274 AQSIGKDSKVYIMETLWDRQ-----RYETASY-C-LTQISLYFTAM----------ANGNSKMFHSDDLIRCIENAG-LE  335 (363)
T ss_dssp             HHHCCTTCEEEEEECCTTSC-----SSHHHHH-H-HHHHHHHHHHS----------SCSSCCSCCHHHHHHHHHTTT-EE
T ss_pred             HHhcCCCcEEEEEeeccCCc-----cccchhh-H-HHHhhhhHHhh----------hCCCCcccCHHHHHHHHHHcC-Ce
Confidence            89999999998865443211     0000001 0 11111112110          011234569999999999999 98


Q ss_pred             ecEEE
Q 016644          303 INKLE  307 (385)
Q Consensus       303 i~~le  307 (385)
                      +.++.
T Consensus       336 ~v~~~  340 (363)
T 3dp7_A          336 VEEIQ  340 (363)
T ss_dssp             ESCCC
T ss_pred             EEEEE
Confidence            76654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.68  E-value=4.4e-08  Score=91.17  Aligned_cols=104  Identities=16%  Similarity=0.116  Sum_probs=69.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .         ..+|+.-|+-.......-+.++.               --|
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~~~~a~~~~~~---------------~~~   97 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLAD--------S---------FGTVEGLELSADMLAIARRRNPD---------------AVL   97 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTT--------T---------SSEEEEEESCHHHHHHHHHHCTT---------------SEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHH--------c---------CCeEEEEECCHHHHHHHHhhCCC---------------CEE
Confidence            457999999999998887752        1         13678888754333333333321               112


Q ss_pred             eccccCccccccCCCCcccEEEccc-ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAF-SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~-alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      +.   +++.+ +-+++++|+|+++. ++||+..                                   .+|+..+|+.-+
T Consensus        98 ~~---~d~~~-~~~~~~fD~v~~~~~~l~~~~~-----------------------------------~~~~~~~l~~~~  138 (263)
T 3pfg_A           98 HH---GDMRD-FSLGRRFSAVTCMFSSIGHLAG-----------------------------------QAELDAALERFA  138 (263)
T ss_dssp             EE---CCTTT-CCCSCCEEEEEECTTGGGGSCH-----------------------------------HHHHHHHHHHHH
T ss_pred             EE---CChHH-CCccCCcCEEEEcCchhhhcCC-----------------------------------HHHHHHHHHHHH
Confidence            22   35333 32378999999998 9999743                                   124556778888


Q ss_pred             hhhccCCeEEEEeccC
Q 016644          224 KEMKRCGSMFLVCLGR  239 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~  239 (385)
                      +-|+|||+|++.....
T Consensus       139 ~~L~pgG~l~i~~~~~  154 (263)
T 3pfg_A          139 AHVLPDGVVVVEPWWF  154 (263)
T ss_dssp             HTEEEEEEEEECCCCC
T ss_pred             HhcCCCcEEEEEeccC
Confidence            9999999999986543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.68  E-value=2.9e-08  Score=90.65  Aligned_cols=164  Identities=14%  Similarity=0.171  Sum_probs=94.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ..       . -+++..|+........-+....              .++ 
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~--------~~-------~-~~v~~vD~s~~~~~~a~~~~~~--------------~~~-   91 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHE--------HG-------A-SYVLGLDLSEKMLARARAAGPD--------------TGI-   91 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH--------TT-------C-SEEEEEESCHHHHHHHHHTSCS--------------SSE-
T ss_pred             CCCEEEEEcCcCCHHHHHHHH--------CC-------C-CeEEEEcCCHHHHHHHHHhccc--------------CCc-
Confidence            457999999999998876642        11       1 2788888754333333333221              111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++.+-.+|++++|+|+++.++||+.+..                                      .+|+.-++
T Consensus        92 -~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~  132 (243)
T 3bkw_A           92 -TYERADLDKLHLPQDSFDLAYSSLALHYVEDVA--------------------------------------RLFRTVHQ  132 (243)
T ss_dssp             -EEEECCGGGCCCCTTCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHHH
T ss_pred             -eEEEcChhhccCCCCCceEEEEeccccccchHH--------------------------------------HHHHHHHH
Confidence             112335444347889999999999999985422                                      34455678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCC----CCCccchHHHHHHHHHHHHHcCCccccc-ccc---cccccccCCHHHHHHHHH
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQ----GGPGILFGTHFQDAWNDLVQEGLITGEK-RDS---FNIPVYASSLQEFKEVVE  296 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~----~~~~~~~~~~l~~al~~mv~eG~i~~e~-~d~---f~~P~y~ps~~Ev~~~le  296 (385)
                      -|+|||++++.............    ...+...+.          ..+.+.... ...   -....|.++.+|+.+.++
T Consensus       133 ~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~  202 (243)
T 3bkw_A          133 ALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWP----------IDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALI  202 (243)
T ss_dssp             HEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEE----------ECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHH
T ss_pred             hcCcCcEEEEEeCCcccccCcCcceeecCCCceEEe----------ecccccccceeeeeccCceEEEeccHHHHHHHHH
Confidence            99999999998754311000000    000000000          000000000 000   024567789999999999


Q ss_pred             hcCceEecEEEEE
Q 016644          297 ANGSFVINKLEVF  309 (385)
Q Consensus       297 ~~gsF~i~~le~~  309 (385)
                      +.| |++..++..
T Consensus       203 ~aG-F~~~~~~~~  214 (243)
T 3bkw_A          203 RSG-FAIEHVEEF  214 (243)
T ss_dssp             HTT-CEEEEEEEC
T ss_pred             HcC-CEeeeeccC
Confidence            999 998877754

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.67  E-value=1.9e-07  Score=89.01  Aligned_cols=168  Identities=12%  Similarity=0.151  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCceEEeeeCCCC--CcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh
Q 016644           45 LHLLRETLDNIQLMEPPSETIPFALADLGCSC--GNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ  122 (385)
Q Consensus        45 ~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~--G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~  122 (385)
                      ...+..+++.+..     ....-+|+|+|||+  |.|+..+.+.+       .       |..+|+..|.-.......-.
T Consensus        63 r~fl~rav~~l~~-----~~g~~q~LDLGcG~pT~~~~~~la~~~-------~-------P~arVv~VD~sp~mLa~Ar~  123 (277)
T 3giw_A           63 RDWMNRAVAHLAK-----EAGIRQFLDIGTGIPTSPNLHEIAQSV-------A-------PESRVVYVDNDPIVLTLSQG  123 (277)
T ss_dssp             HHHHHHHHHHHHH-----TSCCCEEEEESCCSCCSSCHHHHHHHH-------C-------TTCEEEEEECCHHHHHTTHH
T ss_pred             HHHHHHHHHHhcc-----ccCCCEEEEeCCCCCcccHHHHHHHHH-------C-------CCCEEEEEeCChHHHHHHHH
Confidence            4445555554431     12346899999998  77887776433       1       67899999975444333333


Q ss_pred             cCCCCCCchhHhhhcCcCCceeeccccCcccc--ccC--C--CCccc-----EEEcccccccccCCchhhhcccccccCC
Q 016644          123 LLPPIGSSMEECLASDTHRSYFAAGVPGSFYR--RLF--P--TRSID-----FFHSAFSLHWLSQVPESALDKRSMAYNK  191 (385)
Q Consensus       123 ~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~--rLf--P--~~Svd-----~~~Ss~alHWLS~~P~~l~~~~~~~~nk  191 (385)
                      .|...          ...+--|+.+   ++.+  .++  |  .+++|     .++|+.+||||.+...            
T Consensus       124 ~l~~~----------~~~~~~~v~a---D~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~------------  178 (277)
T 3giw_A          124 LLAST----------PEGRTAYVEA---DMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDD------------  178 (277)
T ss_dssp             HHCCC----------SSSEEEEEEC---CTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGC------------
T ss_pred             HhccC----------CCCcEEEEEe---cccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhh------------
Confidence            33320          0011124444   4432  111  1  35555     5899999999977421            


Q ss_pred             CceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCc
Q 016644          192 GKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLI  271 (385)
Q Consensus       192 g~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i  271 (385)
                                             ....|+.-.+-|+|||+|+++.+..+..         .   +.+......+...|  
T Consensus       179 -----------------------p~~~l~~l~~~L~PGG~Lvls~~~~d~~---------p---~~~~~~~~~~~~~g--  221 (277)
T 3giw_A          179 -----------------------AVGIVRRLLEPLPSGSYLAMSIGTAEFA---------P---QEVGRVAREYAARN--  221 (277)
T ss_dssp             -----------------------HHHHHHHHHTTSCTTCEEEEEEECCTTS---------H---HHHHHHHHHHHHTT--
T ss_pred             -----------------------HHHHHHHHHHhCCCCcEEEEEeccCCCC---------H---HHHHHHHHHHHhcC--
Confidence                                   0112344578899999999999886410         0   11222222222333  


Q ss_pred             ccccccccccccccCCHHHHHHHHHhcCceEecE
Q 016644          272 TGEKRDSFNIPVYASSLQEFKEVVEANGSFVINK  305 (385)
Q Consensus       272 ~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~  305 (385)
                               .|+.++|.+|+.+.++  | |++..
T Consensus       222 ---------~p~~~rs~~ei~~~f~--G-lelve  243 (277)
T 3giw_A          222 ---------MPMRLRTHAEAEEFFE--G-LELVE  243 (277)
T ss_dssp             ---------CCCCCCCHHHHHHTTT--T-SEECT
T ss_pred             ---------CCCccCCHHHHHHHhC--C-CcccC
Confidence                     4889999999999995  6 88644

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.66  E-value=6.2e-07  Score=88.35  Aligned_cols=151  Identities=19%  Similarity=0.234  Sum_probs=95.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ++       |..+++.-|+| .-....-+.+..          ..-..++ 
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~-~~~~~a~~~~~~----------~~l~~~v-  254 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLD--------AF-------PGLRGTLLERP-PVAEEARELLTG----------RGLADRC-  254 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHH--------HC-------TTCEEEEEECH-HHHHHHHHHHHH----------TTCTTTE-
T ss_pred             cCcEEEEeCCCccHHHHHHHH--------HC-------CCCeEEEEcCH-HHHHHHHHhhhh----------cCcCCce-
Confidence            468999999999998877763        33       66888999994 333322222210          0001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.++|+ .-+|. ++|++++..+||+.++.                                    +...+|+.-++
T Consensus       255 -~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~------------------------------------~~~~~L~~~~~  295 (369)
T 3gwz_A          255 -EILPGDFF-ETIPD-GADVYLIKHVLHDWDDD------------------------------------DVVRILRRIAT  295 (369)
T ss_dssp             -EEEECCTT-TCCCS-SCSEEEEESCGGGSCHH------------------------------------HHHHHHHHHHT
T ss_pred             -EEeccCCC-CCCCC-CceEEEhhhhhccCCHH------------------------------------HHHHHHHHHHH
Confidence             23456887 34566 89999999999986441                                    12345677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH---HHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND---LVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~---mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      -|+|||+|++.-...++..        .   . . ..+.+   |+..|             -..++.+|+++++++.| |
T Consensus       296 ~L~pgG~l~i~e~~~~~~~--------~---~-~-~~~~d~~~~~~~~-------------g~~~t~~e~~~ll~~aG-f  348 (369)
T 3gwz_A          296 AMKPDSRLLVIDNLIDERP--------A---A-S-TLFVDLLLLVLVG-------------GAERSESEFAALLEKSG-L  348 (369)
T ss_dssp             TCCTTCEEEEEEEBCCSSC--------C---H-H-HHHHHHHHHHHHS-------------CCCBCHHHHHHHHHTTT-E
T ss_pred             HcCCCCEEEEEEeccCCCC--------C---C-c-hhHhhHHHHhhcC-------------CccCCHHHHHHHHHHCC-C
Confidence            9999999998765553210        0   1 1 12222   22211             23478999999999999 9


Q ss_pred             EecEEEE
Q 016644          302 VINKLEV  308 (385)
Q Consensus       302 ~i~~le~  308 (385)
                      ++.++..
T Consensus       349 ~~~~~~~  355 (369)
T 3gwz_A          349 RVERSLP  355 (369)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9877754

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.66  E-value=1.4e-07  Score=93.49  Aligned_cols=117  Identities=14%  Similarity=0.172  Sum_probs=72.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhc-CcCCce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLAS-DTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~-~~~~~~  143 (385)
                      +..+|+|+|||+|..++.+....              .|..+|+..|+-.......-+.+...    .....+ ....++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~g~~~~~~v  144 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLV--------------GEHGKVIGVDMLDNQLEVARKYVEYH----AEKFFGSPSRSNV  144 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH--------------TTTCEEEEEECCHHHHHHHHHTHHHH----HHHHHSSTTCCCE
T ss_pred             CCCEEEEecCccCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHHHHh----hhhcccccCCCce
Confidence            45799999999999988876332              14578999998544333332221100    000000 000122


Q ss_pred             -eeccccCccccc------cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHH
Q 016644          144 -FAAGVPGSFYRR------LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLA  216 (385)
Q Consensus       144 -f~~~vpgSFy~r------LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~  216 (385)
                       |..   +++..-      -+|++++|+|+|+.++||+.+.+                                      
T Consensus       145 ~~~~---~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~--------------------------------------  183 (383)
T 4fsd_A          145 RFLK---GFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKL--------------------------------------  183 (383)
T ss_dssp             EEEE---SCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHH--------------------------------------
T ss_pred             EEEE---ccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHH--------------------------------------
Confidence             333   343322      47889999999999999986533                                      


Q ss_pred             HHHHHHHhhhccCCeEEEEeccCC
Q 016644          217 AFLGARSKEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       217 ~FL~~Ra~EL~pGG~lvl~~~g~~  240 (385)
                      .+|+.-.+-|+|||+|++......
T Consensus       184 ~~l~~~~r~LkpgG~l~i~~~~~~  207 (383)
T 4fsd_A          184 ALFKEIHRVLRDGGELYFSDVYAD  207 (383)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             HHHHHHHHHcCCCCEEEEEEeccc
Confidence            234556789999999999876654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.65  E-value=1.5e-07  Score=85.02  Aligned_cols=113  Identities=13%  Similarity=-0.003  Sum_probs=70.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ..       +..+++.-|+........-+.+....-. .. .   ..+--|
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~--------~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~-~---~~~v~~   88 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLK--------DS-------FFEQITGVDVSYRSLEIAQERLDRLRLP-RN-Q---WERLQL   88 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHH--------CT-------TCSEEEEEESCHHHHHHHHHHHTTCCCC-HH-H---HTTEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHh--------hC-------CCCEEEEEECCHHHHHHHHHHHHHhcCC-cc-c---CcceEE
Confidence            346999999999998887752        22       4468899998655554444443311000 00 0   001112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++...-++.+++|+|+++.++||+.+ |                                   ++..+|+.-++
T Consensus        89 ~~---~d~~~~~~~~~~fD~v~~~~~l~~~~~-~-----------------------------------~~~~~l~~~~~  129 (217)
T 3jwh_A           89 IQ---GALTYQDKRFHGYDAATVIEVIEHLDL-S-----------------------------------RLGAFERVLFE  129 (217)
T ss_dssp             EE---CCTTSCCGGGCSCSEEEEESCGGGCCH-H-----------------------------------HHHHHHHHHHT
T ss_pred             Ee---CCcccccccCCCcCEEeeHHHHHcCCH-H-----------------------------------HHHHHHHHHHH
Confidence            22   244333356689999999999999832 1                                   24456777889


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+|||+++++.
T Consensus       130 ~LkpgG~li~~~  141 (217)
T 3jwh_A          130 FAQPKIVIVTTP  141 (217)
T ss_dssp             TTCCSEEEEEEE
T ss_pred             HcCCCEEEEEcc
Confidence            999999776554

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.65  E-value=6.2e-07  Score=87.98  Aligned_cols=151  Identities=17%  Similarity=0.159  Sum_probs=95.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ..-+|+|+|||+|..++.+.        +++       |.++++.-|||. --...-+.+...           ...+  
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~--------~~~-------p~~~~~~~dlp~-v~~~a~~~~~~~-----------~~~r--  229 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECM--------SLY-------PGCKITVFDIPE-VVWTAKQHFSFQ-----------EEEQ--  229 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHH--------HHC-------SSCEEEEEECHH-HHHHHHHHSCC-------------CCS--
T ss_pred             cCCeEEeeCCCCCHHHHHHH--------HhC-------CCceeEeccCHH-HHHHHHHhhhhc-----------ccCc--
Confidence            34689999999999887776        444       788999999984 111122222210           0122  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +..++|+|++.-+|  ..|+++....||-.++   .                                 +-..+|+..++
T Consensus       230 v~~~~gD~~~~~~~--~~D~~~~~~vlh~~~d---~---------------------------------~~~~iL~~~~~  271 (353)
T 4a6d_A          230 IDFQEGDFFKDPLP--EADLYILARVLHDWAD---G---------------------------------KCSHLLERIYH  271 (353)
T ss_dssp             EEEEESCTTTSCCC--CCSEEEEESSGGGSCH---H---------------------------------HHHHHHHHHHH
T ss_pred             eeeecCccccCCCC--CceEEEeeeecccCCH---H---------------------------------HHHHHHHHHHh
Confidence            23467899987444  4699999999995333   1                                 22356777889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH---HHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND---LVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~---mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      .|+|||++++.=.-.++..      . ..+    ...+.+   |+.-             .-..||.+|+++++++.| |
T Consensus       272 al~pgg~lli~e~~~~~~~------~-~~~----~~~~~dl~ml~~~-------------~g~ert~~e~~~ll~~AG-f  326 (353)
T 4a6d_A          272 TCKPGGGILVIESLLDEDR------R-GPL----LTQLYSLNMLVQT-------------EGQERTPTHYHMLLSSAG-F  326 (353)
T ss_dssp             HCCTTCEEEEEECCCCTTS------C-CCH----HHHHHHHHHHHSS-------------SCCCCCHHHHHHHHHHHT-C
T ss_pred             hCCCCCEEEEEEeeeCCCC------C-CCH----HHHHHHHHHHHhC-------------CCcCCCHHHHHHHHHHCC-C
Confidence            9999999988654332110      0 111    112222   2211             123479999999999999 9


Q ss_pred             EecEEE
Q 016644          302 VINKLE  307 (385)
Q Consensus       302 ~i~~le  307 (385)
                      ++.++.
T Consensus       327 ~~v~v~  332 (353)
T 4a6d_A          327 RDFQFK  332 (353)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            876654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.65  E-value=4.4e-07  Score=85.15  Aligned_cols=152  Identities=9%  Similarity=0.027  Sum_probs=93.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCC--------CCchhHhhh
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPI--------GSSMEECLA  136 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~--------~~~~~~~~~  136 (385)
                      +..+|+|+|||+|.++..+.+        .         ..+|+--|+....-...++.....        ......+. 
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~--------~---------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~-  129 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFAD--------R---------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFK-  129 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE-
T ss_pred             CCCeEEEeCCCCcHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHhcccccccccccccccccccc-
Confidence            357999999999999987752        1         258899998766555544433200        00000000 


Q ss_pred             cCcCCceeeccccCccccccCCC-CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHH
Q 016644          137 SDTHRSYFAAGVPGSFYRRLFPT-RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDL  215 (385)
Q Consensus       137 ~~~~~~~f~~~vpgSFy~rLfP~-~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~  215 (385)
                      ....+--|..   +++.+--+++ +++|+|++..+||++..  ..                                  .
T Consensus       130 ~~~~~i~~~~---~D~~~l~~~~~~~FD~V~~~~~l~~l~~--~~----------------------------------~  170 (252)
T 2gb4_A          130 SSSGSISLYC---CSIFDLPRANIGKFDRIWDRGALVAINP--GD----------------------------------H  170 (252)
T ss_dssp             ETTSSEEEEE---SCTTTGGGGCCCCEEEEEESSSTTTSCG--GG----------------------------------H
T ss_pred             cCCCceEEEE---CccccCCcccCCCEEEEEEhhhhhhCCH--HH----------------------------------H
Confidence            0001112333   3655433443 89999999999999842  11                                  2


Q ss_pred             HHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHH
Q 016644          216 AAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVV  295 (385)
Q Consensus       216 ~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~l  295 (385)
                      ..+++.-++-|+|||+|++..+.....             .                      ..-|.+..+++|+...+
T Consensus       171 ~~~l~~~~~~LkpGG~l~l~~~~~~~~-------------~----------------------~~g~~~~~~~~el~~~l  215 (252)
T 2gb4_A          171 DRYADIILSLLRKEFQYLVAVLSYDPT-------------K----------------------HAGPPFYVPSAELKRLF  215 (252)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEEEECCTT-------------S----------------------CCCSSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEEEEEecCCc-------------c----------------------CCCCCCCCCHHHHHHHh
Confidence            345566789999999997665443100             0                      01244557899999999


Q ss_pred             HhcCceEecEEEEEe
Q 016644          296 EANGSFVINKLEVFK  310 (385)
Q Consensus       296 e~~gsF~i~~le~~~  310 (385)
                      +. + |++..++.++
T Consensus       216 ~~-~-f~v~~~~~~~  228 (252)
T 2gb4_A          216 GT-K-CSMQCLEEVD  228 (252)
T ss_dssp             TT-T-EEEEEEEEEE
T ss_pred             hC-C-eEEEEEeccc
Confidence            86 5 9999999876

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.64  E-value=9.5e-08  Score=85.69  Aligned_cols=135  Identities=12%  Similarity=0.091  Sum_probs=83.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCce-eEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEF-SAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~-qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +..+|+|+|||+|..+..+                    .. +++..|+........-+..+.               --
T Consensus        36 ~~~~vLdiG~G~G~~~~~l--------------------~~~~v~~vD~s~~~~~~a~~~~~~---------------~~   80 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL--------------------PYPQKVGVEPSEAMLAVGRRRAPE---------------AT   80 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC--------------------CCSEEEEECCCHHHHHHHHHHCTT---------------SE
T ss_pred             CCCeEEEECCCCCHhHHhC--------------------CCCeEEEEeCCHHHHHHHHHhCCC---------------cE
Confidence            4579999999999877654                    13 778888754443333332211               11


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      +.   -+++.+--+|++++|+|+++.++||+.+..                                      .+|+.-.
T Consensus        81 ~~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~  119 (211)
T 2gs9_A           81 WV---RAWGEALPFPGESFDVVLLFTTLEFVEDVE--------------------------------------RVLLEAR  119 (211)
T ss_dssp             EE---CCCTTSCCSCSSCEEEEEEESCTTTCSCHH--------------------------------------HHHHHHH
T ss_pred             EE---EcccccCCCCCCcEEEEEEcChhhhcCCHH--------------------------------------HHHHHHH
Confidence            22   224332226889999999999999986422                                      2345567


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcC
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG  299 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~g  299 (385)
                      +-|+|||+++++.+.+.           ..+    ...+..+...|.       .......+.|++|++++++  |
T Consensus       120 ~~L~pgG~l~i~~~~~~-----------~~~----~~~~~~~~~~~~-------~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          120 RVLRPGGALVVGVLEAL-----------SPW----AALYRRLGEKGV-------LPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             HHEEEEEEEEEEEECTT-----------SHH----HHHHHHHHHTTC-------TTGGGCCCCCHHHHHHHHC--S
T ss_pred             HHcCCCCEEEEEecCCc-----------CcH----HHHHHHHhhccC-------ccccccccCCHHHHHHHhc--C
Confidence            89999999999987763           111    112222222221       1112345689999999999  7

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.63  E-value=4.5e-08  Score=97.69  Aligned_cols=146  Identities=10%  Similarity=0.066  Sum_probs=93.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .         ..+|+.-|+..+.....-+. ..           ......|
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~--------~---------g~~v~gvD~s~~~~~~a~~~-~~-----------~~~~~~~  157 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQE--------A---------GVRHLGFEPSSGVAAKAREK-GI-----------RVRTDFF  157 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHH--------T---------TCEEEEECCCHHHHHHHHTT-TC-----------CEECSCC
T ss_pred             CCCEEEEecCCCCHHHHHHHH--------c---------CCcEEEECCCHHHHHHHHHc-CC-----------Ccceeee
Confidence            457999999999998777652        1         24888889865444333222 10           0000111


Q ss_pred             eccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..+   . .+.+ ++++++|+|+|+.+|||+.+.                                      ..||+.-+
T Consensus       158 ~~~---~-~~~l~~~~~~fD~I~~~~vl~h~~d~--------------------------------------~~~l~~~~  195 (416)
T 4e2x_A          158 EKA---T-ADDVRRTEGPANVIYAANTLCHIPYV--------------------------------------QSVLEGVD  195 (416)
T ss_dssp             SHH---H-HHHHHHHHCCEEEEEEESCGGGCTTH--------------------------------------HHHHHHHH
T ss_pred             chh---h-HhhcccCCCCEEEEEECChHHhcCCH--------------------------------------HHHHHHHH
Confidence            111   1 1223 578999999999999998542                                      34556678


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccc-ccccccCCHHHHHHHHHhcCceE
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSF-NIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f-~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      +-|+|||+|++......               . +   +    ...     .++.+ .-..++.+.+++..++++.| |+
T Consensus       196 r~LkpgG~l~i~~~~~~---------------~-~---~----~~~-----~~~~~~~~~~~~~s~~~l~~ll~~aG-f~  246 (416)
T 4e2x_A          196 ALLAPDGVFVFEDPYLG---------------D-I---V----AKT-----SFDQIFDEHFFLFSATSVQGMAQRCG-FE  246 (416)
T ss_dssp             HHEEEEEEEEEEEECHH---------------H-H---H----HHT-----CGGGCSTTCCEECCHHHHHHHHHHTT-EE
T ss_pred             HHcCCCeEEEEEeCChH---------------H-h---h----hhc-----chhhhhhhhhhcCCHHHHHHHHHHcC-CE
Confidence            99999999999864431               1 1   1    111     11111 23455689999999999999 99


Q ss_pred             ecEEEEEe
Q 016644          303 INKLEVFK  310 (385)
Q Consensus       303 i~~le~~~  310 (385)
                      +..++.+.
T Consensus       247 ~~~~~~~~  254 (416)
T 4e2x_A          247 LVDVQRLP  254 (416)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcc
Confidence            98888864

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.63  E-value=2.6e-07  Score=83.34  Aligned_cols=160  Identities=16%  Similarity=0.102  Sum_probs=91.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ..       |..+++.-|+........-+.+....  ...   ....+--|
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~--------~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~---~~~~~v~~   88 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLK--------DK-------SFEQITGVDVSYSVLERAKDRLKIDR--LPE---MQRKRISL   88 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHT--------ST-------TCCEEEEEESCHHHHHHHHHHHTGGG--SCH---HHHTTEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHh--------cC-------CCCEEEEEECCHHHHHHHHHHHHhhc--ccc---ccCcceEE
Confidence            357999999999998887752        11       45789999986544444433332100  000   00001112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++...-++++++|+|+++.++||+.+ |                                   ++..+|+.-++
T Consensus        89 ~~---~d~~~~~~~~~~fD~V~~~~~l~~~~~-~-----------------------------------~~~~~l~~~~~  129 (219)
T 3jwg_A           89 FQ---SSLVYRDKRFSGYDAATVIEVIEHLDE-N-----------------------------------RLQAFEKVLFE  129 (219)
T ss_dssp             EE---CCSSSCCGGGTTCSEEEEESCGGGCCH-H-----------------------------------HHHHHHHHHHT
T ss_pred             Ee---CcccccccccCCCCEEEEHHHHHhCCH-H-----------------------------------HHHHHHHHHHH
Confidence            22   354333367789999999999999832 1                                   24456677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHH----HHHHhcCc
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFK----EVVEANGS  300 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~----~~le~~gs  300 (385)
                      -|+|||+++.+.....+          ..|.. +.        .+..      ...-..++.+.+|+.    .++++.| 
T Consensus       130 ~LkpgG~~i~~~~~~~~----------~~~~~-~~--------~~~~------~~~~~~~~~~~~~l~~~~~~l~~~~G-  183 (219)
T 3jwg_A          130 FTRPQTVIVSTPNKEYN----------FHYGN-LF--------EGNL------RHRDHRFEWTRKEFQTWAVKVAEKYG-  183 (219)
T ss_dssp             TTCCSEEEEEEEBGGGG----------GCCCC-T-------------------GGGCCTTSBCHHHHHHHHHHHHHHHT-
T ss_pred             hhCCCEEEEEccchhhh----------hhhcc-cC--------cccc------cccCceeeecHHHHHHHHHHHHHHCC-
Confidence            99999966554432210          00000 00        0000      011233456889998    7788888 


Q ss_pred             eEecEEEEE
Q 016644          301 FVINKLEVF  309 (385)
Q Consensus       301 F~i~~le~~  309 (385)
                      |+++....-
T Consensus       184 f~v~~~~~g  192 (219)
T 3jwg_A          184 YSVRFLQIG  192 (219)
T ss_dssp             EEEEEEEES
T ss_pred             cEEEEEecC
Confidence            988665543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.62  E-value=1.7e-07  Score=88.63  Aligned_cols=106  Identities=16%  Similarity=0.120  Sum_probs=69.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCC-ceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPP-EFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p-~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      ++.+|+|+|||+|..+..+...        +       | ..+|+..|+........-+.+..           ...+--
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~~v~   75 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPL--------L-------PEGSKYTGIDSGETLLAEARELFRL-----------LPYDSE   75 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTT--------S-------CTTCEEEEEESCHHHHHHHHHHHHS-----------SSSEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHh--------C-------CCCCEEEEEECCHHHHHHHHHHHHh-----------cCCceE
Confidence            5689999999999988877522        1       3 37889999854433333222211           001111


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |.   -+++.+ +-+++++|+|++..++|++.+.+.                                      +|+.-.
T Consensus        76 ~~---~~d~~~-~~~~~~fD~v~~~~~l~~~~~~~~--------------------------------------~l~~~~  113 (284)
T 3gu3_A           76 FL---EGDATE-IELNDKYDIAICHAFLLHMTTPET--------------------------------------MLQKMI  113 (284)
T ss_dssp             EE---ESCTTT-CCCSSCEEEEEEESCGGGCSSHHH--------------------------------------HHHHHH
T ss_pred             EE---Ecchhh-cCcCCCeeEEEECChhhcCCCHHH--------------------------------------HHHHHH
Confidence            22   235443 433579999999999999865433                                      335567


Q ss_pred             hhhccCCeEEEEecc
Q 016644          224 KEMKRCGSMFLVCLG  238 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g  238 (385)
                      +-|+|||++++..+.
T Consensus       114 ~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          114 HSVKKGGKIICFEPH  128 (284)
T ss_dssp             HTEEEEEEEEEEECC
T ss_pred             HHcCCCCEEEEEecc
Confidence            899999999988765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.62  E-value=1.6e-07  Score=85.49  Aligned_cols=108  Identities=16%  Similarity=0.182  Sum_probs=70.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...                 ..+++.-|+........-+.+..           ...+--|
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~~~~~D~s~~~~~~a~~~~~~-----------~~~~~~~   88 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK-----------------FKNTWAVDLSQEMLSEAENKFRS-----------QGLKPRL   88 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG-----------------SSEEEEECSCHHHHHHHHHHHHH-----------TTCCCEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC-----------------CCcEEEEECCHHHHHHHHHHHhh-----------cCCCeEE
Confidence            4579999999999998877521                 14688888755444433332211           0001112


Q ss_pred             eccccCccccccCCCCcccEEEccc-ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAF-SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~-alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                         +.+++..-.++ +++|+|+++. ++||+...                                   .|+..+|+.-+
T Consensus        89 ---~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~  129 (246)
T 1y8c_A           89 ---ACQDISNLNIN-RKFDLITCCLDSTNYIIDS-----------------------------------DDLKKYFKAVS  129 (246)
T ss_dssp             ---ECCCGGGCCCS-CCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHH
T ss_pred             ---EecccccCCcc-CCceEEEEcCccccccCCH-----------------------------------HHHHHHHHHHH
Confidence               23354432345 8999999998 99997431                                   13456677788


Q ss_pred             hhhccCCeEEEEeccC
Q 016644          224 KEMKRCGSMFLVCLGR  239 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~  239 (385)
                      +-|+|||++++.+...
T Consensus       130 ~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A          130 NHLKEGGVFIFDINSY  145 (246)
T ss_dssp             TTEEEEEEEEEEEECH
T ss_pred             HhcCCCcEEEEEecCH
Confidence            9999999999987654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.62  E-value=4.8e-07  Score=82.24  Aligned_cols=105  Identities=14%  Similarity=0.154  Sum_probs=68.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...        .       +  +++.-|+........-+.++.               --|
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~--------~-------~--~v~~~D~s~~~~~~a~~~~~~---------------~~~   87 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKE--------F-------G--DTAGLELSEDMLTHARKRLPD---------------ATL   87 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHH--------H-------S--EEEEEESCHHHHHHHHHHCTT---------------CEE
T ss_pred             CCCeEEEecccCCHHHHHHHHh--------C-------C--cEEEEeCCHHHHHHHHHhCCC---------------CEE
Confidence            3579999999999998877632        2       3  677788754443333333321               112


Q ss_pred             eccccCccccccCCCCcccEEEc-ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHS-AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~S-s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      .   .+++.+ +-+++++|+|+| ..++||+...                                   .|+..+|+.-+
T Consensus        88 ~---~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~  128 (239)
T 3bxo_A           88 H---QGDMRD-FRLGRKFSAVVSMFSSVGYLKTT-----------------------------------EELGAAVASFA  128 (239)
T ss_dssp             E---ECCTTT-CCCSSCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHH
T ss_pred             E---ECCHHH-cccCCCCcEEEEcCchHhhcCCH-----------------------------------HHHHHHHHHHH
Confidence            2   234333 323789999995 5599997541                                   13456777788


Q ss_pred             hhhccCCeEEEEeccCC
Q 016644          224 KEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~  240 (385)
                      +-|+|||++++......
T Consensus       129 ~~L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A          129 EHLEPGGVVVVEPWWFP  145 (239)
T ss_dssp             HTEEEEEEEEECCCCCT
T ss_pred             HhcCCCeEEEEEeccCc
Confidence            99999999999865543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.59  E-value=3.4e-06  Score=81.29  Aligned_cols=154  Identities=14%  Similarity=0.144  Sum_probs=94.7

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      .+|+|+|||+|..+..+..        ++       |..+++.-|+ .......-+.+..      ...    ..++  .
T Consensus       169 ~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~-~~~~~~a~~~~~~------~~~----~~~v--~  220 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQ--------AE-------PSARGVMLDR-EGSLGVARDNLSS------LLA----GERV--S  220 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHH--------HC-------TTCEEEEEEC-TTCTHHHHHHTHH------HHH----TTSE--E
T ss_pred             CEEEEeCCCchHHHHHHHH--------HC-------CCCEEEEeCc-HHHHHHHHHHHhh------cCC----CCcE--E
Confidence            7999999999998877763        22       5678999999 5454444333321      000    0122  2


Q ss_pred             cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644          147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM  226 (385)
Q Consensus       147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL  226 (385)
                      .+.++|.+. +| +++|++++...+|-.++  .                                  +...+|+.-++-|
T Consensus       221 ~~~~d~~~~-~~-~~~D~v~~~~vl~~~~~--~----------------------------------~~~~~l~~~~~~L  262 (334)
T 2ip2_A          221 LVGGDMLQE-VP-SNGDIYLLSRIIGDLDE--A----------------------------------ASLRLLGNCREAM  262 (334)
T ss_dssp             EEESCTTTC-CC-SSCSEEEEESCGGGCCH--H----------------------------------HHHHHHHHHHHHS
T ss_pred             EecCCCCCC-CC-CCCCEEEEchhccCCCH--H----------------------------------HHHHHHHHHHHhc
Confidence            355688774 55 78999999999983221  1                                  1235567778999


Q ss_pred             ccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEE
Q 016644          227 KRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKL  306 (385)
Q Consensus       227 ~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~l  306 (385)
                      +|||++++.-...++..        ......+.+ +.-+...+             -..++.+|+++++++.| |++.++
T Consensus       263 ~pgG~l~i~e~~~~~~~--------~~~~~~~~~-~~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~  319 (334)
T 2ip2_A          263 AGDGRVVVIERTISASE--------PSPMSVLWD-VHLFMACA-------------GRHRTTEEVVDLLGRGG-FAVERI  319 (334)
T ss_dssp             CTTCEEEEEECCBCSSS--------CCHHHHHHH-HHHHHHHS-------------CCCCBHHHHHHHHHHTT-EEEEEE
T ss_pred             CCCCEEEEEEeccCCCC--------CcchhHHhh-hHhHhhCC-------------CcCCCHHHHHHHHHHCC-CceeEE
Confidence            99999998865543211        111111111 11111111             12358999999999999 998776


Q ss_pred             EEE
Q 016644          307 EVF  309 (385)
Q Consensus       307 e~~  309 (385)
                      ...
T Consensus       320 ~~~  322 (334)
T 2ip2_A          320 VDL  322 (334)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.59  E-value=1.2e-06  Score=85.74  Aligned_cols=158  Identities=12%  Similarity=0.134  Sum_probs=97.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ++       |..+++.-|+ .......-+.+..          ..-..++ 
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~-~~~~~~a~~~~~~----------~~~~~~v-  242 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLK--------HF-------PELDSTILNL-PGAIDLVNENAAE----------KGVADRM-  242 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHH--------HC-------TTCEEEEEEC-GGGHHHHHHHHHH----------TTCTTTE-
T ss_pred             CCCEEEEECCcccHHHHHHHH--------HC-------CCCeEEEEec-HHHHHHHHHHHHh----------cCCCCCE-
Confidence            457999999999998888763        22       5678899999 4444333322210          0001112 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.++|.+--+|+.  |+++++.++|.+++                                    ++...+|+.-++
T Consensus       243 -~~~~~d~~~~~~~~~--D~v~~~~vlh~~~d------------------------------------~~~~~~l~~~~~  283 (359)
T 1x19_A          243 -RGIAVDIYKESYPEA--DAVLFCRILYSANE------------------------------------QLSTIMCKKAFD  283 (359)
T ss_dssp             -EEEECCTTTSCCCCC--SEEEEESCGGGSCH------------------------------------HHHHHHHHHHHT
T ss_pred             -EEEeCccccCCCCCC--CEEEEechhccCCH------------------------------------HHHHHHHHHHHH
Confidence             234568776555555  99999999985432                                    124456777889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH-cCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ-EGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      -|+|||++++.-...++.  .     ...+    ...+ .|.. .|        .-.....+++.+|+.+++++.| |++
T Consensus       284 ~L~pgG~l~i~e~~~~~~--~-----~~~~----~~~~-~~~~~~~--------~g~~~~~~~t~~e~~~ll~~aG-f~~  342 (359)
T 1x19_A          284 AMRSGGRLLILDMVIDDP--E-----NPNF----DYLS-HYILGAG--------MPFSVLGFKEQARYKEILESLG-YKD  342 (359)
T ss_dssp             TCCTTCEEEEEEECCCCT--T-----SCCH----HHHH-HHGGGGG--------SSCCCCCCCCGGGHHHHHHHHT-CEE
T ss_pred             hcCCCCEEEEEecccCCC--C-----CchH----HHHH-HHHHhcC--------CCCcccCCCCHHHHHHHHHHCC-Cce
Confidence            999999997776554322  1     0111    1122 3321 11        0011334689999999999999 988


Q ss_pred             cEEEEE
Q 016644          304 NKLEVF  309 (385)
Q Consensus       304 ~~le~~  309 (385)
                      .++..+
T Consensus       343 v~~~~~  348 (359)
T 1x19_A          343 VTMVRK  348 (359)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            776654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.58  E-value=4.7e-08  Score=93.04  Aligned_cols=176  Identities=10%  Similarity=0.094  Sum_probs=99.0

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA  146 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~  146 (385)
                      -+|+|+|||+|..+..+...                 ..+|+..|+-.......-+.+....  ..  ..   .+--|+.
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~-----------------~~~v~gvD~s~~~~~~a~~~~~~~~--~~--~~---~~v~~~~  139 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDL-----------------GWEVTALELSTSVLAAFRKRLAEAP--AD--VR---DRCTLVQ  139 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTT-----------------TCCEEEEESCHHHHHHHHHHHHTSC--HH--HH---TTEEEEE
T ss_pred             CcEEEEeccCCHHHHHHHHc-----------------CCeEEEEECCHHHHHHHHHHHhhcc--cc--cc---cceEEEe
Confidence            49999999999999887621                 2578888885544443333322100  00  00   0111332


Q ss_pred             cccCccccccCCCCcccEEE-cccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          147 GVPGSFYRRLFPTRSIDFFH-SAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       147 ~vpgSFy~rLfP~~Svd~~~-Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                         +++.+ +-+++++|+|+ ++.++||++.                                    .|...+|+.-++-
T Consensus       140 ---~d~~~-~~~~~~fD~v~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~  179 (299)
T 3g2m_A          140 ---GDMSA-FALDKRFGTVVISSGSINELDE------------------------------------ADRRGLYASVREH  179 (299)
T ss_dssp             ---CBTTB-CCCSCCEEEEEECHHHHTTSCH------------------------------------HHHHHHHHHHHHH
T ss_pred             ---Cchhc-CCcCCCcCEEEECCcccccCCH------------------------------------HHHHHHHHHHHHH
Confidence               35443 43478999887 5688998642                                    1345667778899


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcc---------------cccccccccccccCCHHH
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLIT---------------GEKRDSFNIPVYASSLQE  290 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~---------------~e~~d~f~~P~y~ps~~E  290 (385)
                      |+|||+|++............... ...+...-...+  ........               ...+..+....++.+++|
T Consensus       180 L~pgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e  256 (299)
T 3g2m_A          180 LEPGGKFLLSLAMSEAAESEPLER-KQELPGRSGRRY--VLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQ  256 (299)
T ss_dssp             EEEEEEEEEEEECCHHHHSCCCCC----------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHH
T ss_pred             cCCCcEEEEEeecCccccccchhc-cceeecCCCcEE--EEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHH
Confidence            999999999998874321000000 000000000000  00000000               011122345566789999


Q ss_pred             HHHHHHhcCceEecEEEEEe
Q 016644          291 FKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       291 v~~~le~~gsF~i~~le~~~  310 (385)
                      +..++++.| |++..++.+.
T Consensus       257 l~~ll~~aG-F~v~~~~~~~  275 (299)
T 3g2m_A          257 VVRELVRSG-FDVIAQTPFA  275 (299)
T ss_dssp             HHHHHHHTT-CEEEEEEEEC
T ss_pred             HHHHHHHCC-CEEEEEEecC
Confidence            999999999 9999998886

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.56  E-value=5.9e-07  Score=86.42  Aligned_cols=158  Identities=14%  Similarity=0.123  Sum_probs=94.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .+       |..+++.-|++ ......-+.+..          ..-..++ 
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~-~~~~~a~~~~~~----------~~~~~~v-  217 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQ--------HN-------PNAEIFGVDWA-SVLEVAKENARI----------QGVASRY-  217 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHH--------HC-------TTCEEEEEECH-HHHHHHHHHHHH----------HTCGGGE-
T ss_pred             CCCEEEEECCCcCHHHHHHHH--------HC-------CCCeEEEEecH-HHHHHHHHHHHh----------cCCCcce-
Confidence            457999999999998777653        22       56789999997 443333222210          0000112 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++.+--+|.+ +|+++++..+|.+++                                    .+...+|+.-++
T Consensus       218 -~~~~~d~~~~~~~~~-~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~  259 (335)
T 2r3s_A          218 -HTIAGSAFEVDYGND-YDLVLLPNFLHHFDV------------------------------------ATCEQLLRKIKT  259 (335)
T ss_dssp             -EEEESCTTTSCCCSC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHH
T ss_pred             -EEEecccccCCCCCC-CcEEEEcchhccCCH------------------------------------HHHHHHHHHHHH
Confidence             124457665334544 999999999997632                                    123456677788


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++.-....+..      . ......+.+ +.-+...            .....++.+|+.+.+++.| |++.
T Consensus       260 ~L~pgG~l~i~e~~~~~~~------~-~~~~~~~~~-~~~~~~~------------~~~~~~t~~~~~~ll~~aG-f~~~  318 (335)
T 2r3s_A          260 ALAVEGKVIVFDFIPNSDR------I-TPPDAAAFS-LVMLATT------------PNGDAYTFAEYESMFSNAG-FSHS  318 (335)
T ss_dssp             HEEEEEEEEEEECCCCTTS------S-CSHHHHHHH-HHHHHHS------------SSCCCCCHHHHHHHHHHTT-CSEE
T ss_pred             hCCCCcEEEEEeecCCCCc------C-CchHHHHHH-HHHHeeC------------CCCCcCCHHHHHHHHHHCC-CCee
Confidence            9999999988776553211      0 111111111 1112111            0124579999999999999 9876


Q ss_pred             EEEE
Q 016644          305 KLEV  308 (385)
Q Consensus       305 ~le~  308 (385)
                      ++..
T Consensus       319 ~~~~  322 (335)
T 2r3s_A          319 QLHS  322 (335)
T ss_dssp             EEEC
T ss_pred             eEEE
Confidence            6543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.56  E-value=3.1e-07  Score=84.84  Aligned_cols=163  Identities=15%  Similarity=0.125  Sum_probs=97.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCc-----hhHh---hh
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSS-----MEEC---LA  136 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~-----~~~~---~~  136 (385)
                      +..+|+|+|||+|..++.+..        ..       + .+|+..|+.......+-+.+......     ...+   ..
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~--------~~-------~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  119 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSAC--------ES-------F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLE  119 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGG--------GT-------E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHhh--------cc-------c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhccc
Confidence            458999999999999887651        11       2 47888888655444443333221000     0000   00


Q ss_pred             cCcC----------CceeeccccCcccccc-CCC---CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHH
Q 016644          137 SDTH----------RSYFAAGVPGSFYRRL-FPT---RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEH  202 (385)
Q Consensus       137 ~~~~----------~~~f~~~vpgSFy~rL-fP~---~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~  202 (385)
                      ....          ..+ ...+.+++.+-. +++   +++|+|+|+.+||++....                        
T Consensus       120 ~~~~~~~~~~~~l~~~v-~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~------------------------  174 (265)
T 2i62_A          120 GNRMKGPEKEEKLRRAI-KQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDL------------------------  174 (265)
T ss_dssp             TTCSCHHHHHHHHHHHE-EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSH------------------------
T ss_pred             ccccchHHHHHHhhhhh-eeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCCh------------------------
Confidence            0000          001 011233444322 356   8999999999999764321                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccc
Q 016644          203 TANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIP  282 (385)
Q Consensus       203 v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P  282 (385)
                                .|+..+|+.-++-|+|||+|++......           ..+ .           .|        ....+
T Consensus       175 ----------~~~~~~l~~~~~~LkpgG~li~~~~~~~-----------~~~-~-----------~~--------~~~~~  213 (265)
T 2i62_A          175 ----------PAYRTALRNLGSLLKPGGFLVMVDALKS-----------SYY-M-----------IG--------EQKFS  213 (265)
T ss_dssp             ----------HHHHHHHHHHHTTEEEEEEEEEEEESSC-----------CEE-E-----------ET--------TEEEE
T ss_pred             ----------HHHHHHHHHHHhhCCCCcEEEEEecCCC-----------ceE-E-----------cC--------Ccccc
Confidence                      1345667778899999999999874321           001 0           01        11234


Q ss_pred             cccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          283 VYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       283 ~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      .+..+.+++...+++.| |++..++...
T Consensus       214 ~~~~~~~~~~~~l~~aG-f~~~~~~~~~  240 (265)
T 2i62_A          214 SLPLGWETVRDAVEEAG-YTIEQFEVIS  240 (265)
T ss_dssp             CCCCCHHHHHHHHHHTT-CEEEEEEEEC
T ss_pred             ccccCHHHHHHHHHHCC-CEEEEEEEec
Confidence            45678999999999999 9999888765

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.54  E-value=9.3e-07  Score=87.00  Aligned_cols=149  Identities=19%  Similarity=0.208  Sum_probs=92.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ++       |..+++.-|+|.  .   ......             .++  
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~--------~~-------~~~~~~~~D~~~--~---~~~a~~-------------~~~--  253 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIIS--------KY-------PLIKGINFDLPQ--V---IENAPP-------------LSG--  253 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHH--------HC-------TTCEEEEEECHH--H---HTTCCC-------------CTT--
T ss_pred             CCCEEEEeCCCCcHHHHHHHH--------HC-------CCCeEEEeChHH--H---HHhhhh-------------cCC--
Confidence            457999999999999887763        33       567888889841  1   111110             012  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +..+.++|.+ -+|.  +|+++++.+||++++.                                    +...+|+.-++
T Consensus       254 v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~------------------------------------~~~~~l~~~~~  294 (372)
T 1fp1_D          254 IEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDE------------------------------------KCIEFLSNCHK  294 (372)
T ss_dssp             EEEEECCTTT-CCCC--EEEEEEESSGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             CEEEeCCccc-CCCC--CCEEEEecccccCCHH------------------------------------HHHHHHHHHHH
Confidence            2235568877 3565  8999999999986441                                    12356677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHH---HHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDL---VQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~m---v~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      -|+|||+|++.-...++.. .     .... + ....+.++   +..|             ...++.+|+++++++.| |
T Consensus       295 ~L~pgG~l~i~e~~~~~~~-~-----~~~~-~-~~~~~~d~~~~~~~~-------------~~~~t~~e~~~ll~~aG-f  352 (372)
T 1fp1_D          295 ALSPNGKVIIVEFILPEEP-N-----TSEE-S-KLVSTLDNLMFITVG-------------GRERTEKQYEKLSKLSG-F  352 (372)
T ss_dssp             HEEEEEEEEEEEEEECSSC-C-----SSHH-H-HHHHHHHHHHHHHHS-------------CCCEEHHHHHHHHHHTT-C
T ss_pred             hcCCCCEEEEEEeccCCCC-c-----cchH-H-HHHHHhhHHHHhccC-------------CccCCHHHHHHHHHHCC-C
Confidence            9999999998855443211 0     0110 1 01222222   1111             12359999999999999 9


Q ss_pred             EecEEEEE
Q 016644          302 VINKLEVF  309 (385)
Q Consensus       302 ~i~~le~~  309 (385)
                      ++.++...
T Consensus       353 ~~~~~~~~  360 (372)
T 1fp1_D          353 SKFQVACR  360 (372)
T ss_dssp             SEEEEEEE
T ss_pred             ceEEEEEc
Confidence            87776653

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.53  E-value=5.4e-08  Score=93.79  Aligned_cols=179  Identities=9%  Similarity=0.071  Sum_probs=98.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc--
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS--  142 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~--  142 (385)
                      ...+|+|+|||+|..+..+..        .        ...+|+--|+....-...-+....      .  .......  
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~--------~--------~~~~v~GiD~S~~~l~~A~~~~~~------~--~~~~~~~~~  103 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFY--------G--------EIALLVATDPDADAIARGNERYNK------L--NSGIKTKYY  103 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHH--------T--------TCSEEEEEESCHHHHHHHHHHHHH------H--CC----CCC
T ss_pred             CCCeEEEEecCCcHhHHHHHh--------c--------CCCeEEEEECCHHHHHHHHHHHHh------c--ccccccccc
Confidence            357899999999987765431        1        125788888866544433222110      0  0000000  


Q ss_pred             -e-eecc-ccCccc-ccc---CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHH
Q 016644          143 -Y-FAAG-VPGSFY-RRL---FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDL  215 (385)
Q Consensus       143 -~-f~~~-vpgSFy-~rL---fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~  215 (385)
                       + |..+ +-++-+ +.|   +|++++|+|+|..++||+-+.+.                                   .
T Consensus       104 ~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~-----------------------------------~  148 (302)
T 2vdw_A          104 KFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRH-----------------------------------Y  148 (302)
T ss_dssp             EEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTT-----------------------------------H
T ss_pred             ccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHH-----------------------------------H
Confidence             0 2222 222212 333   68899999999999999754321                                   2


Q ss_pred             HHHHHHHHhhhccCCeEEEEeccCCCCCCCCCC----CCcc-chHHHHHHHHHHHHHcCCcccc-------ccccccccc
Q 016644          216 AAFLGARSKEMKRCGSMFLVCLGRTSADPTDQG----GPGI-LFGTHFQDAWNDLVQEGLITGE-------KRDSFNIPV  283 (385)
Q Consensus       216 ~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~----~~~~-~~~~~l~~al~~mv~eG~i~~e-------~~d~f~~P~  283 (385)
                      ..+|+.-++-|+|||+|+++++.+.........    ..+- .+++    .|.   .-..++.+       +-.....|-
T Consensus       149 ~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~e  221 (302)
T 2vdw_A          149 ATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSE----NYM---SVEKIADDRIVVYNPSTMSTPMTE  221 (302)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTT----SEE---EECEEETTEEEEBCTTTBSSCEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCccccccccccc----cee---eeccccccccceeeccccCCCcee
Confidence            356788899999999999998865321100000    0000 0000    000   00000000       001234566


Q ss_pred             ccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          284 YASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       284 y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      |+-+++|+.+.+++.| |++.....|.
T Consensus       222 ~~v~~~el~~l~~~~G-l~lv~~~~f~  247 (302)
T 2vdw_A          222 YIIKKNDIVRVFNEYG-FVLVDNVDFA  247 (302)
T ss_dssp             ECCCHHHHHHHHHHTT-EEEEEEEEHH
T ss_pred             eeeEHHHHHHHHHHCC-CEEEEecChH
Confidence            8889999999999999 9987776653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.53  E-value=6.4e-07  Score=78.29  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=83.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .         ..+++..|.-.......-+.++.               .-+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~~D~~~~~~~~a~~~~~~---------------~~~   93 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSK--------Q---------GHDVLGTDLDPILIDYAKQDFPE---------------ARW   93 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHCTT---------------SEE
T ss_pred             CCCeEEEECCCCCHHHHHHHH--------C---------CCcEEEEcCCHHHHHHHHHhCCC---------------CcE
Confidence            457999999999998887652        1         24778888744333333333321               112


Q ss_pred             eccccCccccccCCCCcccEEEcc-cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSA-FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss-~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                         +.+++.+--+|++++|+|+++ ..+|+++.                                    .+...+|+.-.
T Consensus        94 ---~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~------------------------------------~~~~~~l~~~~  134 (195)
T 3cgg_A           94 ---VVGDLSVDQISETDFDLIVSAGNVMGFLAE------------------------------------DGREPALANIH  134 (195)
T ss_dssp             ---EECCTTTSCCCCCCEEEEEECCCCGGGSCH------------------------------------HHHHHHHHHHH
T ss_pred             ---EEcccccCCCCCCceeEEEECCcHHhhcCh------------------------------------HHHHHHHHHHH
Confidence               223444333678999999998 78887632                                    12345667778


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||++++......                                            ..+.+++...+++.| |++
T Consensus       135 ~~l~~~G~l~~~~~~~~--------------------------------------------~~~~~~~~~~l~~~G-f~~  169 (195)
T 3cgg_A          135 RALGADGRAVIGFGAGR--------------------------------------------GWVFGDFLEVAERVG-LEL  169 (195)
T ss_dssp             HHEEEEEEEEEEEETTS--------------------------------------------SCCHHHHHHHHHHHT-EEE
T ss_pred             HHhCCCCEEEEEeCCCC--------------------------------------------CcCHHHHHHHHHHcC-CEE
Confidence            99999999998764321                                            046788888888888 887


Q ss_pred             cEEE
Q 016644          304 NKLE  307 (385)
Q Consensus       304 ~~le  307 (385)
                      ....
T Consensus       170 ~~~~  173 (195)
T 3cgg_A          170 ENAF  173 (195)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            6554

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.51  E-value=8.2e-07  Score=86.96  Aligned_cols=157  Identities=15%  Similarity=0.181  Sum_probs=93.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .+       |..+++.-|+ .......-+.+..          ..-..++ 
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~--------~~-------~~~~~~~~D~-~~~~~~a~~~~~~----------~~~~~~v-  234 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIAL--------RA-------PHLRGTLVEL-AGPAERARRRFAD----------AGLADRV-  234 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHH--------HC-------TTCEEEEEEC-HHHHHHHHHHHHH----------TTCTTTE-
T ss_pred             CCCEEEEECCCcCHHHHHHHH--------HC-------CCCEEEEEeC-HHHHHHHHHHHHh----------cCCCCce-
Confidence            457999999999988877763        22       5678999998 4333333222210          0001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.++|.+. +|.+ +|+++++.++|++++.                                    +...+|+.-.+
T Consensus       235 -~~~~~d~~~~-~~~~-~D~v~~~~vl~~~~~~------------------------------------~~~~~l~~~~~  275 (374)
T 1qzz_A          235 -TVAEGDFFKP-LPVT-ADVVLLSFVLLNWSDE------------------------------------DALTILRGCVR  275 (374)
T ss_dssp             -EEEECCTTSC-CSCC-EEEEEEESCGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             -EEEeCCCCCc-CCCC-CCEEEEeccccCCCHH------------------------------------HHHHHHHHHHH
Confidence             2244577763 4554 9999999999975331                                    12355677789


Q ss_pred             hhccCCeEEEEec--cCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          225 EMKRCGSMFLVCL--GRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       225 EL~pGG~lvl~~~--g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      -|+|||++++.-.  ..++.      . ...+ ..+.+.+. +...|             ...++.+|+.+++++.| |+
T Consensus       276 ~L~pgG~l~i~e~~~~~~~~------~-~~~~-~~~~~~~~-~~~~~-------------~~~~~~~~~~~ll~~aG-f~  332 (374)
T 1qzz_A          276 ALEPGGRLLVLDRADVEGDG------A-DRFF-STLLDLRM-LTFMG-------------GRVRTRDEVVDLAGSAG-LA  332 (374)
T ss_dssp             HEEEEEEEEEEECCH--------------HHH-HHHHHHHH-HHHHS-------------CCCCCHHHHHHHHHTTT-EE
T ss_pred             hcCCCcEEEEEechhhcCCC------C-Ccch-hhhcchHH-HHhCC-------------CcCCCHHHHHHHHHHCC-Cc
Confidence            9999999988765  32211      0 0111 11111111 11111             24579999999999999 99


Q ss_pred             ecEEEEEe
Q 016644          303 INKLEVFK  310 (385)
Q Consensus       303 i~~le~~~  310 (385)
                      +.++....
T Consensus       333 ~~~~~~~~  340 (374)
T 1qzz_A          333 LASERTSG  340 (374)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEECC
Confidence            88877664

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.51  E-value=3.4e-07  Score=79.22  Aligned_cols=132  Identities=14%  Similarity=0.193  Sum_probs=85.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .        - .+++.-|+........-+..+               +--|
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~--------~--------~-~~v~~vD~s~~~~~~a~~~~~---------------~v~~   64 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLE--------F--------A-TKLYCIDINVIALKEVKEKFD---------------SVIT   64 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHT--------T--------E-EEEEEECSCHHHHHHHHHHCT---------------TSEE
T ss_pred             CCCeEEEECCCCCHHHHHHHh--------h--------c-CeEEEEeCCHHHHHHHHHhCC---------------CcEE
Confidence            457999999999999887762        1        1 278888875433333322211               1112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..+   +   .-++++++|+++++.++||+.+..                                      .+|+.-.+
T Consensus        65 ~~~---d---~~~~~~~~D~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~  100 (170)
T 3i9f_A           65 LSD---P---KEIPDNSVDFILFANSFHDMDDKQ--------------------------------------HVISEVKR  100 (170)
T ss_dssp             ESS---G---GGSCTTCEEEEEEESCSTTCSCHH--------------------------------------HHHHHHHH
T ss_pred             EeC---C---CCCCCCceEEEEEccchhcccCHH--------------------------------------HHHHHHHH
Confidence            222   3   227889999999999999985422                                      23455678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++....+.....      +.                            ......+.++++..++  | |++.
T Consensus       101 ~L~pgG~l~~~~~~~~~~~~------~~----------------------------~~~~~~~~~~~~~~l~--G-f~~~  143 (170)
T 3i9f_A          101 ILKDDGRVIIIDWRKENTGI------GP----------------------------PLSIRMDEKDYMGWFS--N-FVVE  143 (170)
T ss_dssp             HEEEEEEEEEEEECSSCCSS------SS----------------------------CGGGCCCHHHHHHHTT--T-EEEE
T ss_pred             hcCCCCEEEEEEcCcccccc------Cc----------------------------hHhhhcCHHHHHHHHh--C-cEEE
Confidence            99999999999776542110      00                            0112358999999998  7 9887


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      +...+
T Consensus       144 ~~~~~  148 (170)
T 3i9f_A          144 KRFNP  148 (170)
T ss_dssp             EEECS
T ss_pred             EccCC
Confidence            76644

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.50  E-value=3.9e-07  Score=81.03  Aligned_cols=142  Identities=12%  Similarity=0.067  Sum_probs=90.5

Q ss_pred             EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644           68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG  147 (385)
Q Consensus        68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~  147 (385)
                      +|+|+|||+|..+..+..        .         ..+++.-|+.......+-+.+..          . ..+.-|   
T Consensus        32 ~vLdiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~----------~-~~~~~~---   80 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLAS--------L---------GYEVTAVDQSSVGLAKAKQLAQE----------K-GVKITT---   80 (202)
T ss_dssp             EEEECCCSCTHHHHHHHT--------T---------TCEEEEECSSHHHHHHHHHHHHH----------H-TCCEEE---
T ss_pred             CEEEECCCCCHhHHHHHh--------C---------CCeEEEEECCHHHHHHHHHHHHh----------c-CCceEE---
Confidence            999999999998876652        1         24788888754333332222210          0 011112   


Q ss_pred             ccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016644          148 VPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMK  227 (385)
Q Consensus       148 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~  227 (385)
                      +.+++..--+|++++|+|+++. .||    +.                                 .|...+|+.-.+-|+
T Consensus        81 ~~~d~~~~~~~~~~fD~v~~~~-~~~----~~---------------------------------~~~~~~l~~~~~~L~  122 (202)
T 2kw5_A           81 VQSNLADFDIVADAWEGIVSIF-CHL----PS---------------------------------SLRQQLYPKVYQGLK  122 (202)
T ss_dssp             ECCBTTTBSCCTTTCSEEEEEC-CCC----CH---------------------------------HHHHHHHHHHHTTCC
T ss_pred             EEcChhhcCCCcCCccEEEEEh-hcC----CH---------------------------------HHHHHHHHHHHHhcC
Confidence            2235443337889999999853 444    11                                 134556677789999


Q ss_pred             cCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEE
Q 016644          228 RCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLE  307 (385)
Q Consensus       228 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le  307 (385)
                      |||++++......+.          .+            ..|        ....+.++.+.+|+.+.++  | |++..++
T Consensus       123 pgG~l~~~~~~~~~~----------~~------------~~~--------~~~~~~~~~~~~~l~~~l~--G-f~v~~~~  169 (202)
T 2kw5_A          123 PGGVFILEGFAPEQL----------QY------------NTG--------GPKDLDLLPKLETLQSELP--S-LNWLIAN  169 (202)
T ss_dssp             SSEEEEEEEECTTTG----------GG------------TSC--------CSSSGGGCCCHHHHHHHCS--S-SCEEEEE
T ss_pred             CCcEEEEEEeccccc----------cC------------CCC--------CCCcceeecCHHHHHHHhc--C-ceEEEEE
Confidence            999999999876411          00            011        1124578899999999999  7 9999988


Q ss_pred             EEeC
Q 016644          308 VFKG  311 (385)
Q Consensus       308 ~~~~  311 (385)
                      ....
T Consensus       170 ~~~~  173 (202)
T 2kw5_A          170 NLER  173 (202)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8763

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.48  E-value=2.9e-07  Score=82.78  Aligned_cols=107  Identities=13%  Similarity=0.109  Sum_probs=72.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .         ..+++.-|+-.......-+.+...            .+--|
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~~  101 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAP--------H---------CKRLTVIDVMPRAIGRACQRTKRW------------SHISW  101 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGG--------G---------EEEEEEEESCHHHHHHHHHHTTTC------------SSEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHhcccC------------CCeEE
Confidence            468999999999998887752        1         247888888554444444444321            11112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++. .+.|++++|+|+++.++||+.+.+                                   ++..+|+.-++
T Consensus       102 ~~---~d~~-~~~~~~~fD~v~~~~~l~~~~~~~-----------------------------------~~~~~l~~~~~  142 (216)
T 3ofk_A          102 AA---TDIL-QFSTAELFDLIVVAEVLYYLEDMT-----------------------------------QMRTAIDNMVK  142 (216)
T ss_dssp             EE---CCTT-TCCCSCCEEEEEEESCGGGSSSHH-----------------------------------HHHHHHHHHHH
T ss_pred             EE---cchh-hCCCCCCccEEEEccHHHhCCCHH-----------------------------------HHHHHHHHHHH
Confidence            22   3533 334889999999999999986522                                   24456677889


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      -|+|||+|+++....
T Consensus       143 ~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          143 MLAPGGHLVFGSARD  157 (216)
T ss_dssp             TEEEEEEEEEEEECH
T ss_pred             HcCCCCEEEEEecCC
Confidence            999999999987554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.47  E-value=5.7e-07  Score=81.23  Aligned_cols=166  Identities=14%  Similarity=0.136  Sum_probs=93.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      .-+|+|+|||+|..++.+...        +       |..+++.-|+-......+-+.+..           ....++ |
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~--------~-------p~~~v~gvD~s~~~l~~a~~~~~~-----------~~~~~v~~   95 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQ--------N-------PDINYIGIDIQKSVLSYALDKVLE-----------VGVPNIKL   95 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH--------C-------TTSEEEEEESCHHHHHHHHHHHHH-----------HCCSSEEE
T ss_pred             CCeEEEEccCcCHHHHHHHHH--------C-------CCCCEEEEEcCHHHHHHHHHHHHH-----------cCCCCEEE
Confidence            468999999999998877632        2       567899999854443333222210           001122 3


Q ss_pred             eccccCccc--cccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFY--RRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy--~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +.+   +..  .+.+|++++|+|+++...+|.......-           .                   -+...||..-
T Consensus        96 ~~~---d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~-----------~-------------------~~~~~~l~~~  142 (214)
T 1yzh_A           96 LWV---DGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKR-----------R-------------------LTYKTFLDTF  142 (214)
T ss_dssp             EEC---CSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGG-----------S-------------------TTSHHHHHHH
T ss_pred             EeC---CHHHHHhhcCCCCCCEEEEECCCCccccchhhh-----------c-------------------cCCHHHHHHH
Confidence            333   333  3447899999999998877754211100           0                   0123466667


Q ss_pred             HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccc-cccccccccccCCHHHHHHHHHhcCce
Q 016644          223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGE-KRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e-~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      ++-|+|||++++..-..                ......+..+.+.|.-..+ ..|-...+.......++..-+...| +
T Consensus       143 ~~~LkpgG~l~~~~~~~----------------~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~t~~e~~~~~~g-~  205 (214)
T 1yzh_A          143 KRILPENGEIHFKTDNR----------------GLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKG-Q  205 (214)
T ss_dssp             HHHSCTTCEEEEEESCH----------------HHHHHHHHHHHHHTCEEEEEESSGGGSCCCCCCCCHHHHHTGGGC-C
T ss_pred             HHHcCCCcEEEEEeCCH----------------HHHHHHHHHHHHCCCeeeeccccccccCCCCCCCcHHHHHHHHCC-C
Confidence            88899999998865321                2234444445556642211 1122222233333456767677777 6


Q ss_pred             EecEEE
Q 016644          302 VINKLE  307 (385)
Q Consensus       302 ~i~~le  307 (385)
                      .|-++.
T Consensus       206 ~i~~~~  211 (214)
T 1yzh_A          206 VIYRVE  211 (214)
T ss_dssp             CCEEEE
T ss_pred             CeEEEE
Confidence            665543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.45  E-value=2.1e-06  Score=83.64  Aligned_cols=157  Identities=17%  Similarity=0.170  Sum_probs=95.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .+       |..+++.-|+ .......-+.+..          ..-..++ 
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~--------~~-------~~~~~~~~D~-~~~~~~a~~~~~~----------~~~~~~v-  235 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIAR--------RA-------PHVSATVLEM-AGTVDTARSYLKD----------EGLSDRV-  235 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHH--------HC-------TTCEEEEEEC-TTHHHHHHHHHHH----------TTCTTTE-
T ss_pred             cCcEEEEeCCcCcHHHHHHHH--------hC-------CCCEEEEecC-HHHHHHHHHHHHh----------cCCCCce-
Confidence            457999999999998877763        22       5678888998 4444433322210          0001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++.+. +|.+ +|+++++..+|.+++   .                                 +...+|+.-.+
T Consensus       236 -~~~~~d~~~~-~~~~-~D~v~~~~vl~~~~~---~---------------------------------~~~~~l~~~~~  276 (360)
T 1tw3_A          236 -DVVEGDFFEP-LPRK-ADAIILSFVLLNWPD---H---------------------------------DAVRILTRCAE  276 (360)
T ss_dssp             -EEEECCTTSC-CSSC-EEEEEEESCGGGSCH---H---------------------------------HHHHHHHHHHH
T ss_pred             -EEEeCCCCCC-CCCC-ccEEEEcccccCCCH---H---------------------------------HHHHHHHHHHH
Confidence             1244577653 4554 999999999986532   1                                 23456677788


Q ss_pred             hhccCCeEEEEecc-CCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          225 EMKRCGSMFLVCLG-RTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       225 EL~pGG~lvl~~~g-~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      -|+|||++++.-.. .++..       ...+ ..+.+. .-++..|             ...++.+|+.+++++.| |++
T Consensus       277 ~L~pgG~l~i~e~~~~~~~~-------~~~~-~~~~~~-~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~  333 (360)
T 1tw3_A          277 ALEPGGRILIHERDDLHENS-------FNEQ-FTELDL-RMLVFLG-------------GALRTREKWDGLAASAG-LVV  333 (360)
T ss_dssp             TEEEEEEEEEEECCBCGGGC-------CSHH-HHHHHH-HHHHHHS-------------CCCCBHHHHHHHHHHTT-EEE
T ss_pred             hcCCCcEEEEEEEeccCCCC-------Ccch-hhhccH-HHhhhcC-------------CcCCCHHHHHHHHHHCC-CeE
Confidence            99999999987655 22110       0111 111111 1111111             23579999999999999 998


Q ss_pred             cEEEEEe
Q 016644          304 NKLEVFK  310 (385)
Q Consensus       304 ~~le~~~  310 (385)
                      .++....
T Consensus       334 ~~~~~~~  340 (360)
T 1tw3_A          334 EEVRQLP  340 (360)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            8877664

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.45  E-value=2.1e-06  Score=83.93  Aligned_cols=148  Identities=18%  Similarity=0.180  Sum_probs=92.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..+..+..        ++       |..+++.-|+| ..    ......             ..+  
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~-~~----~~~a~~-------------~~~--  237 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHE--------IF-------PHLKCTVFDQP-QV----VGNLTG-------------NEN--  237 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHH--------HC-------TTSEEEEEECH-HH----HSSCCC-------------CSS--
T ss_pred             CCCEEEEECCCcCHHHHHHHH--------HC-------CCCeEEEeccH-HH----Hhhccc-------------CCC--
Confidence            347999999999998888763        33       56778888985 11    111111             012  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +..+.++|++ -+|  ++|+++++..||++++.                                    +...+|+.-.+
T Consensus       238 v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~------------------------------------~~~~~l~~~~~  278 (358)
T 1zg3_A          238 LNFVGGDMFK-SIP--SADAVLLKWVLHDWNDE------------------------------------QSLKILKNSKE  278 (358)
T ss_dssp             EEEEECCTTT-CCC--CCSEEEEESCGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             cEEEeCccCC-CCC--CceEEEEcccccCCCHH------------------------------------HHHHHHHHHHH
Confidence            2345668877 345  49999999999986441                                    12345677789


Q ss_pred             hhcc---CCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHH---HHcCCcccccccccccccccCCHHHHHHHHHhc
Q 016644          225 EMKR---CGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDL---VQEGLITGEKRDSFNIPVYASSLQEFKEVVEAN  298 (385)
Q Consensus       225 EL~p---GG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~m---v~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~  298 (385)
                      -|+|   ||++++.-....+..      ....+ . ....+.++   +..|             -..++.+|+++++++.
T Consensus       279 ~L~p~~~gG~l~i~e~~~~~~~------~~~~~-~-~~~~~~d~~~~~~~~-------------g~~~t~~e~~~ll~~a  337 (358)
T 1zg3_A          279 AISHKGKDGKVIIIDISIDETS------DDRGL-T-ELQLDYDLVMLTMFL-------------GKERTKQEWEKLIYDA  337 (358)
T ss_dssp             HTGGGGGGCEEEEEECEECTTC------SCHHH-H-HHHHHHHHHHHHHHS-------------CCCEEHHHHHHHHHHT
T ss_pred             hCCCCCCCcEEEEEEeccCCCC------ccchh-h-hHHHhhCHHHhccCC-------------CCCCCHHHHHHHHHHc
Confidence            9999   999988765443210      00000 0 11122222   1111             1246999999999999


Q ss_pred             CceEecEEEE
Q 016644          299 GSFVINKLEV  308 (385)
Q Consensus       299 gsF~i~~le~  308 (385)
                      | |++.++..
T Consensus       338 G-f~~~~~~~  346 (358)
T 1zg3_A          338 G-FSSYKITP  346 (358)
T ss_dssp             T-CCEEEEEE
T ss_pred             C-CCeeEEEe
Confidence            9 98777654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.44  E-value=3.7e-07  Score=82.14  Aligned_cols=111  Identities=19%  Similarity=0.176  Sum_probs=74.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.                    .+++.-|+...       .+                 . |
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~--------------------~~v~~~D~s~~-------~~-----------------~-~  101 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR--------------------NPVHCFDLASL-------DP-----------------R-V  101 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC--------------------SCEEEEESSCS-------ST-----------------T-E
T ss_pred             CCCeEEEECCcCCHHHHHhh--------------------ccEEEEeCCCC-------Cc-----------------e-E
Confidence            35789999999999776541                    35667776543       01                 0 1


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                         +.+++..--+|++++|+|+++.++|| .+ +                                     ..+|+.-++
T Consensus       102 ---~~~d~~~~~~~~~~fD~v~~~~~l~~-~~-~-------------------------------------~~~l~~~~~  139 (215)
T 2zfu_A          102 ---TVCDMAQVPLEDESVDVAVFCLSLMG-TN-I-------------------------------------RDFLEEANR  139 (215)
T ss_dssp             ---EESCTTSCSCCTTCEEEEEEESCCCS-SC-H-------------------------------------HHHHHHHHH
T ss_pred             ---EEeccccCCCCCCCEeEEEEehhccc-cC-H-------------------------------------HHHHHHHHH
Confidence               11233332267899999999999996 22 1                                     233455678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++......                                            +++.+++...+++.| |++.
T Consensus       140 ~L~~gG~l~i~~~~~~--------------------------------------------~~~~~~~~~~l~~~G-f~~~  174 (215)
T 2zfu_A          140 VLKPGGLLKVAEVSSR--------------------------------------------FEDVRTFLRAVTKLG-FKIV  174 (215)
T ss_dssp             HEEEEEEEEEEECGGG--------------------------------------------CSCHHHHHHHHHHTT-EEEE
T ss_pred             hCCCCeEEEEEEcCCC--------------------------------------------CCCHHHHHHHHHHCC-CEEE
Confidence            8999999998753321                                            128889999999998 8876


Q ss_pred             EEE
Q 016644          305 KLE  307 (385)
Q Consensus       305 ~le  307 (385)
                      ...
T Consensus       175 ~~~  177 (215)
T 2zfu_A          175 SKD  177 (215)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            644

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.44  E-value=3.1e-07  Score=85.54  Aligned_cols=156  Identities=12%  Similarity=0.172  Sum_probs=90.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        .         ..+++..|+........-+...               .. |
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~l~~a~~~~~---------------~~-~  100 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQE--------R---------GFEVVLVDPSKEMLEVAREKGV---------------KN-V  100 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHT--------T---------TCEEEEEESCHHHHHHHHHHTC---------------SC-E
T ss_pred             CCCeEEEeCCCcCHHHHHHHH--------c---------CCeEEEEeCCHHHHHHHHhhcC---------------CC-E
Confidence            457999999999998887652        1         2478888875433333222221               11 3


Q ss_pred             eccccCccccccCCCCcccEEEccc-ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAF-SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~-alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..+   ++..--+|++++|+|+++. .+||..+ |.                                     .+|+.-+
T Consensus       101 ~~~---d~~~~~~~~~~fD~v~~~~~~~~~~~~-~~-------------------------------------~~l~~~~  139 (260)
T 2avn_A          101 VEA---KAEDLPFPSGAFEAVLALGDVLSYVEN-KD-------------------------------------KAFSEIR  139 (260)
T ss_dssp             EEC---CTTSCCSCTTCEEEEEECSSHHHHCSC-HH-------------------------------------HHHHHHH
T ss_pred             EEC---cHHHCCCCCCCEEEEEEcchhhhcccc-HH-------------------------------------HHHHHHH
Confidence            222   4333237889999999976 5677655 22                                     2345567


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHH----HHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcC
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHF----QDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG  299 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l----~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~g  299 (385)
                      +-|+|||++++...++...           +.+.+    ...+......|...... ..+.++.++.+++|+.+.   .|
T Consensus       140 ~~LkpgG~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l---aG  204 (260)
T 2avn_A          140 RVLVPDGLLIATVDNFYTF-----------LQQMIEKDAWDQITRFLKTQTTSVGT-TLFSFNSYAFKPEDLDSL---EG  204 (260)
T ss_dssp             HHEEEEEEEEEEEEBHHHH-----------HHHHHHTTCHHHHHHHHHHCEEEEEC-SSEEEEEECBCGGGGSSC---TT
T ss_pred             HHcCCCeEEEEEeCChHHH-----------HHHhhcchhHHHHHHHHhccccccCC-CceeEEEeccCHHHHHHh---cC
Confidence            8999999999998775210           00000    01112223344332111 011123347789999887   77


Q ss_pred             ceEecEEEEEe
Q 016644          300 SFVINKLEVFK  310 (385)
Q Consensus       300 sF~i~~le~~~  310 (385)
                       |++.++....
T Consensus       205 -f~~~~~~~~~  214 (260)
T 2avn_A          205 -FETVDIRGIG  214 (260)
T ss_dssp             -EEEEEEEEEC
T ss_pred             -ceEEEEECCC
Confidence             9988877664

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.43  E-value=9.3e-07  Score=80.53  Aligned_cols=106  Identities=17%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..+..+..                 . .+++.-|+........-+.+..           ...+--|.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~-----------------~-~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~~   84 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLAD-----------------H-YEVTGVDLSEEMLEIAQEKAME-----------TNRHVDFW   84 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTT-----------------T-SEEEEEESCHHHHHHHHHHHHH-----------TTCCCEEE
T ss_pred             CCeEEEecCCCCHHHHHHhh-----------------C-CeEEEEECCHHHHHHHHHhhhh-----------cCCceEEE
Confidence            37899999999998877641                 1 4677778754333333222210           00111122


Q ss_pred             ccccCccccccCCCCcccEEEccc-ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAF-SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~-alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                         .+++.+--++ +++|+|+++. ++||+...                                   .|...+|+.-++
T Consensus        85 ---~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~  125 (243)
T 3d2l_A           85 ---VQDMRELELP-EPVDAITILCDSLNYLQTE-----------------------------------ADVKQTFDSAAR  125 (243)
T ss_dssp             ---ECCGGGCCCS-SCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHH
T ss_pred             ---EcChhhcCCC-CCcCEEEEeCCchhhcCCH-----------------------------------HHHHHHHHHHHH
Confidence               2343332234 8999999987 99997431                                   134556677789


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      -|+|||++++.+...
T Consensus       126 ~L~pgG~l~~~~~~~  140 (243)
T 3d2l_A          126 LLTDGGKLLFDVHSP  140 (243)
T ss_dssp             HEEEEEEEEEEEECH
T ss_pred             hcCCCeEEEEEcCCH
Confidence            999999999977554

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.43  E-value=4.6e-07  Score=83.97  Aligned_cols=148  Identities=14%  Similarity=0.155  Sum_probs=85.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+.+        +        ...+|+--|+-.+......+..+...       ... ..++ 
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~--------~--------g~~~V~gvDis~~ml~~a~~~~~~~~-------~~~-~~~~-   91 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQ--------N--------GAKLVYALDVGTNQLAWKIRSDERVV-------VME-QFNF-   91 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEECSSCCCCCHHHHTCTTEE-------EEC-SCCG-
T ss_pred             CCCEEEEEccCCCHHHHHHHh--------c--------CCCEEEEEcCCHHHHHHHHHhCcccc-------ccc-cceE-
Confidence            456999999999999887762        1        11489999998776554333322100       000 0011 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ....+..+...+++..++|++|++.        +.                                      +|..-++
T Consensus        92 ~~~~~~~~~~~~~d~~~~D~v~~~l--------~~--------------------------------------~l~~i~r  125 (232)
T 3opn_A           92 RNAVLADFEQGRPSFTSIDVSFISL--------DL--------------------------------------ILPPLYE  125 (232)
T ss_dssp             GGCCGGGCCSCCCSEEEECCSSSCG--------GG--------------------------------------THHHHHH
T ss_pred             EEeCHhHcCcCCCCEEEEEEEhhhH--------HH--------------------------------------HHHHHHH
Confidence            1112234333345566777776652        22                                      2244678


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++.+ ..                 .....+..+-..|.+...       ..+..+.+++.+.+++.| |++.
T Consensus       126 vLkpgG~lv~~~-~p-----------------~~e~~~~~~~~~G~~~d~-------~~~~~~~~~l~~~l~~aG-f~v~  179 (232)
T 3opn_A          126 ILEKNGEVAALI-KP-----------------QFEAGREQVGKNGIIRDP-------KVHQMTIEKVLKTATQLG-FSVK  179 (232)
T ss_dssp             HSCTTCEEEEEE-CH-----------------HHHSCHHHHC-CCCCCCH-------HHHHHHHHHHHHHHHHHT-EEEE
T ss_pred             hccCCCEEEEEE-Cc-----------------ccccCHHHhCcCCeecCc-------chhHHHHHHHHHHHHHCC-CEEE
Confidence            999999999965 11                 022223333234544221       123348999999999999 9988


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      .++..
T Consensus       180 ~~~~~  184 (232)
T 3opn_A          180 GLTFS  184 (232)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            87753

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.40  E-value=3.1e-07  Score=84.35  Aligned_cols=107  Identities=12%  Similarity=0.131  Sum_probs=67.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|.++..+...        .       +  +|+.-|+........-+.++.             .+--|
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~--------~-------~--~v~gvD~s~~~~~~a~~~~~~-------------~~~~~  105 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQF--------F-------P--RVIGLDVSKSALEIAAKENTA-------------ANISY  105 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHH--------S-------S--CEEEEESCHHHHHHHHHHSCC-------------TTEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHh--------C-------C--CEEEEECCHHHHHHHHHhCcc-------------cCceE
Confidence            4578999999999999888632        1       3  678888755444444333321             01112


Q ss_pred             eccccCcccccc----CC-CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL----FP-TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       145 ~~~vpgSFy~rL----fP-~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      +.+   ++.+--    ++ ..++|+++++.++||+...                                    |...+|
T Consensus       106 ~~~---d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~------------------------------------~~~~~l  146 (245)
T 3ggd_A          106 RLL---DGLVPEQAAQIHSEIGDANIYMRTGFHHIPVE------------------------------------KRELLG  146 (245)
T ss_dssp             EEC---CTTCHHHHHHHHHHHCSCEEEEESSSTTSCGG------------------------------------GHHHHH
T ss_pred             EEC---cccccccccccccccCccEEEEcchhhcCCHH------------------------------------HHHHHH
Confidence            222   333211    11 2358999999999998531                                    133455


Q ss_pred             HHHHhhhccCCeEEEEeccCC
Q 016644          220 GARSKEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g~~  240 (385)
                      +.-.+-|+|||+|++.-++..
T Consensus       147 ~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          147 QSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             HHHHHHHTTTCEEEEEEECTT
T ss_pred             HHHHHHcCCCCEEEEEeCCcc
Confidence            667899999999988877653

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.39  E-value=3.3e-06  Score=82.32  Aligned_cols=150  Identities=15%  Similarity=0.181  Sum_probs=92.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.+        ++       |..+++.-|+|. .    ......             ..+  
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~--------~~-------p~~~~~~~D~~~-~----~~~a~~-------------~~~--  232 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICE--------TF-------PKLKCIVFDRPQ-V----VENLSG-------------SNN--  232 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHH--------HC-------TTCEEEEEECHH-H----HTTCCC-------------BTT--
T ss_pred             cCceEEEeCCCccHHHHHHHH--------HC-------CCCeEEEeeCHH-H----Hhhccc-------------CCC--
Confidence            457999999999998877763        33       567899999841 1    111111             012  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +..+.++|++ -+|.  +|+++++.+||.+++.                                    +...+|+.-++
T Consensus       233 v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~------------------------------------~~~~~l~~~~~  273 (352)
T 1fp2_A          233 LTYVGGDMFT-SIPN--ADAVLLKYILHNWTDK------------------------------------DCLRILKKCKE  273 (352)
T ss_dssp             EEEEECCTTT-CCCC--CSEEEEESCGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             cEEEeccccC-CCCC--ccEEEeehhhccCCHH------------------------------------HHHHHHHHHHH
Confidence            2235568877 3463  9999999999965331                                    12345677789


Q ss_pred             hhcc---CCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          225 EMKR---CGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       225 EL~p---GG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      -|+|   ||++++.-.......      ....+.  ....+.++..-.         +  .-..++.+|+++++++.| |
T Consensus       274 ~L~p~~~gG~l~i~e~~~~~~~------~~~~~~--~~~~~~d~~~~~---------~--~g~~~t~~e~~~ll~~aG-f  333 (352)
T 1fp2_A          274 AVTNDGKRGKVTIIDMVIDKKK------DENQVT--QIKLLMDVNMAC---------L--NGKERNEEEWKKLFIEAG-F  333 (352)
T ss_dssp             HHSGGGCCCEEEEEECEECTTT------SCHHHH--HHHHHHHHHGGG---------G--TCCCEEHHHHHHHHHHTT-C
T ss_pred             hCCCCCCCcEEEEEEeecCCCC------Cccchh--hhHhhccHHHHh---------c--cCCCCCHHHHHHHHHHCC-C
Confidence            9999   999988865543210      000010  112223321100         1  123468999999999999 9


Q ss_pred             EecEEEE
Q 016644          302 VINKLEV  308 (385)
Q Consensus       302 ~i~~le~  308 (385)
                      ++.++..
T Consensus       334 ~~~~~~~  340 (352)
T 1fp2_A          334 QHYKISP  340 (352)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEe
Confidence            8766654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.36  E-value=2.2e-06  Score=77.26  Aligned_cols=41  Identities=12%  Similarity=0.176  Sum_probs=32.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHH
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL  120 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~l  120 (385)
                      +..+|+|+|||+|..+..+..        .+       |..+|+.-|+-......+
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~--------~~-------p~~~v~gvD~s~~~l~~~   67 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVAR--------QN-------PSRLVVALDADKSRMEKI   67 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHH--------HC-------TTEEEEEEESCGGGGHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHH--------HC-------CCCEEEEEECCHHHHHHH
Confidence            458999999999999988863        22       568999999977666544

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.34  E-value=5.4e-07  Score=85.85  Aligned_cols=48  Identities=13%  Similarity=0.092  Sum_probs=37.4

Q ss_pred             CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEe
Q 016644          157 FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVC  236 (385)
Q Consensus       157 fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~  236 (385)
                      ++++++|+|+|..++||+.-.                                .-..++..+|+.-++-|+|||+|++..
T Consensus       173 ~~~~~fD~I~~~~vl~~ihl~--------------------------------~~~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          173 AQTPEYDVVLCLSLTKWVHLN--------------------------------WGDEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             TCCCCEEEEEEESCHHHHHHH--------------------------------HHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCcCEEEEChHHHHhhhc--------------------------------CCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            578999999999999997310                                012356677888899999999999864

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.32  E-value=5.5e-07  Score=84.88  Aligned_cols=118  Identities=10%  Similarity=0.078  Sum_probs=74.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        .         ..+|+..|+.........+......... ..     .+-.+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~-----~~~~~  113 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVE--------E---------GFSVTSVDASDKMLKYALKERWNRRKEP-AF-----DKWVI  113 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTTSH-HH-----HTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHhhhhccccc-cc-----ceeeE
Confidence            357999999999998887752        1         1488899986544444433221000000 00     01112


Q ss_pred             eccccCcccc---ccCCCCcccEEEcc-cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYR---RLFPTRSIDFFHSA-FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~---rLfP~~Svd~~~Ss-~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      .   .+++..   .+++++++|+|+|+ .++|++.+.....                               +++..+|+
T Consensus       114 ~---~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~-------------------------------~~~~~~l~  159 (293)
T 3thr_A          114 E---EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQ-------------------------------SEHRLALK  159 (293)
T ss_dssp             E---ECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSS-------------------------------HHHHHHHH
T ss_pred             e---ecChhhCccccccCCCeEEEEEcChHHhhcCccccCH-------------------------------HHHHHHHH
Confidence            2   234332   33789999999999 8999987743221                               24566778


Q ss_pred             HHHhhhccCCeEEEEeccC
Q 016644          221 ARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .-++-|+|||+|++.....
T Consensus       160 ~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          160 NIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             HHHHTEEEEEEEEEEEECH
T ss_pred             HHHHHcCCCeEEEEEeCCH
Confidence            8899999999999987643

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.31  E-value=5.8e-06  Score=72.04  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=33.5

Q ss_pred             CCCCcccEEEcccccccc-cCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEE
Q 016644          157 FPTRSIDFFHSAFSLHWL-SQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLV  235 (385)
Q Consensus       157 fP~~Svd~~~Ss~alHWL-S~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~  235 (385)
                      +|++++|+|+|+.++||+ .+.+.                                      +|+.-++-|+|||+|++.
T Consensus        59 ~~~~~fD~V~~~~~l~~~~~~~~~--------------------------------------~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           59 HKESSFDIILSGLVPGSTTLHSAE--------------------------------------ILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             CCSSCEEEEEECCSTTCCCCCCHH--------------------------------------HHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCEeEEEECChhhhcccCHHH--------------------------------------HHHHHHHHCCCCEEEEEE
Confidence            378999999999999999 44332                                      335578999999999995


Q ss_pred             e
Q 016644          236 C  236 (385)
Q Consensus       236 ~  236 (385)
                      .
T Consensus       101 ~  101 (176)
T 2ld4_A          101 E  101 (176)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.30  E-value=7.2e-07  Score=79.50  Aligned_cols=110  Identities=12%  Similarity=0.155  Sum_probs=71.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++..+..                +..+++.-|.........-+.+..          .. .+--|
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~~----------~~-~~~~~   75 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVE----------------DGYKTYGIEISDLQLKKAENFSRE----------NN-FKLNI   75 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHH----------------TTCEEEEEECCHHHHHHHHHHHHH----------HT-CCCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHh----------------CCCEEEEEECCHHHHHHHHHHHHh----------cC-CceEE
Confidence            3579999999999987655411                236888888755443333222110          00 11112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++.+--+|++++|+|+++.++|+++  +.                                  |...+|+.-++
T Consensus        76 ~~---~d~~~~~~~~~~fD~v~~~~~l~~~~--~~----------------------------------~~~~~l~~~~~  116 (209)
T 2p8j_A           76 SK---GDIRKLPFKDESMSFVYSYGTIFHMR--KN----------------------------------DVKEAIDEIKR  116 (209)
T ss_dssp             EE---CCTTSCCSCTTCEEEEEECSCGGGSC--HH----------------------------------HHHHHHHHHHH
T ss_pred             EE---CchhhCCCCCCceeEEEEcChHHhCC--HH----------------------------------HHHHHHHHHHH
Confidence            22   24333226789999999999999873  11                                  34556677789


Q ss_pred             hhccCCeEEEEeccCC
Q 016644          225 EMKRCGSMFLVCLGRT  240 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~  240 (385)
                      -|+|||++++..+...
T Consensus       117 ~LkpgG~l~~~~~~~~  132 (209)
T 2p8j_A          117 VLKPGGLACINFLTTK  132 (209)
T ss_dssp             HEEEEEEEEEEEEETT
T ss_pred             HcCCCcEEEEEEeccc
Confidence            9999999999998875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.30  E-value=2.2e-06  Score=79.68  Aligned_cols=108  Identities=12%  Similarity=0.089  Sum_probs=71.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      -.+|+|+|||+|..|..+...+              -|+=.||--|.-......+-+.....            .+-.++
T Consensus        78 G~~VldlG~G~G~~~~~la~~V--------------G~~G~V~avD~s~~~~~~l~~~a~~~------------~ni~~V  131 (233)
T 4df3_A           78 GDRILYLGIASGTTASHMSDII--------------GPRGRIYGVEFAPRVMRDLLTVVRDR------------RNIFPI  131 (233)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH--------------CTTCEEEEEECCHHHHHHHHHHSTTC------------TTEEEE
T ss_pred             CCEEEEecCcCCHHHHHHHHHh--------------CCCceEEEEeCCHHHHHHHHHhhHhh------------cCeeEE
Confidence            4899999999999999886433              15678898888654444444333211            122345


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      .+..+....--++.+++|++|+..+.||-   +                                     ..++..-.+-
T Consensus       132 ~~d~~~p~~~~~~~~~vDvVf~d~~~~~~---~-------------------------------------~~~l~~~~r~  171 (233)
T 4df3_A          132 LGDARFPEKYRHLVEGVDGLYADVAQPEQ---A-------------------------------------AIVVRNARFF  171 (233)
T ss_dssp             ESCTTCGGGGTTTCCCEEEEEECCCCTTH---H-------------------------------------HHHHHHHHHH
T ss_pred             EEeccCccccccccceEEEEEEeccCChh---H-------------------------------------HHHHHHHHHh
Confidence            55555544444778899999987666551   1                                     1234556788


Q ss_pred             hccCCeEEEEeccC
Q 016644          226 MKRCGSMFLVCLGR  239 (385)
Q Consensus       226 L~pGG~lvl~~~g~  239 (385)
                      |||||+++++.-.+
T Consensus       172 LKpGG~lvI~ik~r  185 (233)
T 4df3_A          172 LRDGGYMLMAIKAR  185 (233)
T ss_dssp             EEEEEEEEEEEECC
T ss_pred             ccCCCEEEEEEecc
Confidence            99999999987554

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.29  E-value=2.2e-06  Score=76.03  Aligned_cols=56  Identities=7%  Similarity=-0.006  Sum_probs=37.4

Q ss_pred             CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEe
Q 016644          157 FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVC  236 (385)
Q Consensus       157 fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~  236 (385)
                      ++++++|+|+|..++||........                           ....+....+|+.-.+-|+|||+|++.+
T Consensus       102 ~~~~~fD~v~~~~~~~~~g~~~~d~---------------------------~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A          102 LQDKKIDIILSDAAVPCIGNKIDDH---------------------------LNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             HTTCCEEEEEECCCCCCCSCHHHHH---------------------------HHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCcccEEEeCCCcCCCCCcccCH---------------------------HHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            6788999999999999953211000                           0011223456677788999999999977


Q ss_pred             ccC
Q 016644          237 LGR  239 (385)
Q Consensus       237 ~g~  239 (385)
                      +..
T Consensus       155 ~~~  157 (201)
T 2plw_A          155 YLG  157 (201)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            553

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.28  E-value=2.1e-06  Score=74.38  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...        +       |..+|+..|+........-+.+...          .-..+++
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~--------~-------~~~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~~~   79 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRS--------T-------PQTTAVCFEISEERRERILSNAINL----------GVSDRIA   79 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTT--------S-------SSEEEEEECSCHHHHHHHHHHHHTT----------TCTTSEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHH--------C-------CCCeEEEEeCCHHHHHHHHHHHHHh----------CCCCCEE
Confidence            4579999999999988877621        1       5688999998554444333322210          0011333


Q ss_pred             eccccCccccccCCC--CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPT--RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~--~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +.   ++..+ .+|.  +++|+++++.++||    +..+                                      +.-
T Consensus        80 ~~---~d~~~-~~~~~~~~~D~i~~~~~~~~----~~~l--------------------------------------~~~  113 (178)
T 3hm2_A           80 VQ---QGAPR-AFDDVPDNPDVIFIGGGLTA----PGVF--------------------------------------AAA  113 (178)
T ss_dssp             EE---CCTTG-GGGGCCSCCSEEEECC-TTC----TTHH--------------------------------------HHH
T ss_pred             Ee---cchHh-hhhccCCCCCEEEECCcccH----HHHH--------------------------------------HHH
Confidence            33   34333 3444  89999999999988    2222                                      345


Q ss_pred             HhhhccCCeEEEEeccC
Q 016644          223 SKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~  239 (385)
                      .+-|+|||++++.....
T Consensus       114 ~~~L~~gG~l~~~~~~~  130 (178)
T 3hm2_A          114 WKRLPVGGRLVANAVTV  130 (178)
T ss_dssp             HHTCCTTCEEEEEECSH
T ss_pred             HHhcCCCCEEEEEeecc
Confidence            67899999999887544

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.24  E-value=6.9e-07  Score=80.53  Aligned_cols=107  Identities=13%  Similarity=0.174  Sum_probs=66.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..+..+..        ..       +  +++..|+-.......-+.+..           ...+--| 
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~--------~~-------~--~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~-   89 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLED--------YG-------F--EVVGVDISEDMIRKAREYAKS-----------RESNVEF-   89 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHH--------TT-------C--EEEEEESCHHHHHHHHHHHHH-----------TTCCCEE-
T ss_pred             CCeEEEEeccCCHHHHHHHH--------cC-------C--EEEEEECCHHHHHHHHHHHHh-----------cCCCceE-
Confidence            57999999999998866642        21       3  788888754333322222110           0011112 


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                        +.+++.+--+|++++|+|+++.++|+...                                    .|...+|+.-++-
T Consensus        90 --~~~d~~~~~~~~~~~D~v~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~  131 (227)
T 1ve3_A           90 --IVGDARKLSFEDKTFDYVIFIDSIVHFEP------------------------------------LELNQVFKEVRRV  131 (227)
T ss_dssp             --EECCTTSCCSCTTCEEEEEEESCGGGCCH------------------------------------HHHHHHHHHHHHH
T ss_pred             --EECchhcCCCCCCcEEEEEEcCchHhCCH------------------------------------HHHHHHHHHHHHH
Confidence              23354443367899999999999554211                                    1234566777899


Q ss_pred             hccCCeEEEEeccC
Q 016644          226 MKRCGSMFLVCLGR  239 (385)
Q Consensus       226 L~pGG~lvl~~~g~  239 (385)
                      |+|||++++.....
T Consensus       132 L~~gG~l~~~~~~~  145 (227)
T 1ve3_A          132 LKPSGKFIMYFTDL  145 (227)
T ss_dssp             EEEEEEEEEEEECH
T ss_pred             cCCCcEEEEEecCh
Confidence            99999999987654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.23  E-value=2.4e-06  Score=80.76  Aligned_cols=100  Identities=13%  Similarity=-0.002  Sum_probs=65.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|+.+..        +         ..+|+.-|+-.+....+-+.+...                 
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~--------~---------g~~V~gvD~S~~ml~~Ar~~~~~~-----------------   90 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALE--------R---------GASVTVFDFSQRMCDDLAEALADR-----------------   90 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHTSSS-----------------
T ss_pred             CcCEEEEEeCcchHHHHHHHh--------c---------CCEEEEEECCHHHHHHHHHHHHhc-----------------
Confidence            457999999999999988752        1         257888898766665554444320                 


Q ss_pred             eccccCccccc-----cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRR-----LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       145 ~~~vpgSFy~r-----LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                        .+.+.+..-     -.+++++|+|+|+.++||+..  .                                  |+...|
T Consensus        91 --~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~--~----------------------------------~~~~~l  132 (261)
T 3iv6_A           91 --CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTT--E----------------------------------EARRAC  132 (261)
T ss_dssp             --CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCH--H----------------------------------HHHHHH
T ss_pred             --cceeeeeecccccccccCCCccEEEEhhhhHhCCH--H----------------------------------HHHHHH
Confidence              111222110     113679999999999998732  1                                  233344


Q ss_pred             HHHHhhhccCCeEEEEec
Q 016644          220 GARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~  237 (385)
                      +.-++-| |||+|++++.
T Consensus       133 ~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          133 LGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             HHHHHHH-TTSEEEEEEE
T ss_pred             HHHHHhC-cCcEEEEEec
Confidence            5566778 9999999874

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.21  E-value=1.3e-06  Score=79.25  Aligned_cols=112  Identities=14%  Similarity=0.138  Sum_probs=69.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      .-+|+|+|||+|..++.+..        ..       |..+++--|+-.......-+.+..           ....++ |
T Consensus        39 ~~~vLDiGcG~G~~~~~la~--------~~-------p~~~v~giD~s~~~l~~a~~~~~~-----------~~~~nv~~   92 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAK--------QN-------PDINYIGIELFKSVIVTAVQKVKD-----------SEAQNVKL   92 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHH--------HC-------TTSEEEEECSCHHHHHHHHHHHHH-----------SCCSSEEE
T ss_pred             CceEEEEecCCCHHHHHHHH--------HC-------CCCCEEEEEechHHHHHHHHHHHH-----------cCCCCEEE
Confidence            46799999999999988753        22       668899999855443333222210           011122 2


Q ss_pred             eccccCccc--cccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFY--RRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy--~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +   -++..  ...+|++++|.++++....|.......           .++                   ....||+.-
T Consensus        93 ~---~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~-----------~rl-------------------~~~~~l~~~  139 (213)
T 2fca_A           93 L---NIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEK-----------RRL-------------------TYSHFLKKY  139 (213)
T ss_dssp             E---CCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGG-----------GST-------------------TSHHHHHHH
T ss_pred             E---eCCHHHHHhhcCcCCcCEEEEECCCCCcCccccc-----------ccc-------------------CcHHHHHHH
Confidence            2   23432  244889999999988877775431100           000                   013456667


Q ss_pred             HhhhccCCeEEEEe
Q 016644          223 SKEMKRCGSMFLVC  236 (385)
Q Consensus       223 a~EL~pGG~lvl~~  236 (385)
                      ++-|+|||+|++.+
T Consensus       140 ~~~LkpgG~l~~~t  153 (213)
T 2fca_A          140 EEVMGKGGSIHFKT  153 (213)
T ss_dssp             HHHHTTSCEEEEEE
T ss_pred             HHHcCCCCEEEEEe
Confidence            88999999999876

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.20  E-value=9.8e-07  Score=80.77  Aligned_cols=140  Identities=9%  Similarity=0.131  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644           35 QAQAIHAQSMLHLLRET-------LDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA  107 (385)
Q Consensus        35 ~~Q~~~~~~~~~~l~~a-------i~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv  107 (385)
                      ..|+++++...|.+.-.       ...+    +.  ...-+|+|+|||+|..++.+..        ..       |..+|
T Consensus         3 ~~q~~~~~~~~~~~~~~~~~~~~d~~~~----f~--~~~~~vLDiGcG~G~~~~~lA~--------~~-------p~~~v   61 (218)
T 3dxy_A            3 SGQEHALENYWPVMGVEFSEDMLDFPAL----FG--REAPVTLEIGFGMGASLVAMAK--------DR-------PEQDF   61 (218)
T ss_dssp             ----CHHHHHHHHHBCCCCSSCCCHHHH----HS--SCCCEEEEESCTTCHHHHHHHH--------HC-------TTSEE
T ss_pred             HHHHHHHHHHhHHhCCCCCCCCCCHHHH----cC--CCCCeEEEEeeeChHHHHHHHH--------HC-------CCCeE
Confidence            45777777777766411       0011    11  1346899999999999888763        22       67889


Q ss_pred             EecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccc
Q 016644          108 FFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRS  186 (385)
Q Consensus       108 ~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~  186 (385)
                      +--|+-......+-+....           ....++ |+.+-...+....+|++++|.+++++...|-......      
T Consensus        62 ~giD~s~~~l~~a~~~~~~-----------~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~------  124 (218)
T 3dxy_A           62 LGIEVHSPGVGACLASAHE-----------EGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNK------  124 (218)
T ss_dssp             EEECSCHHHHHHHHHHHHH-----------TTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGG------
T ss_pred             EEEEecHHHHHHHHHHHHH-----------hCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhh------
Confidence            9999865544444332210           011222 3333111223445899999999999988885332110      


Q ss_pred             cccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEe
Q 016644          187 MAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVC  236 (385)
Q Consensus       187 ~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~  236 (385)
                           .++    ..               ..||..-++-|+|||+|++.+
T Consensus       125 -----rr~----~~---------------~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          125 -----RRI----VQ---------------VPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             -----GSS----CS---------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----hhh----hh---------------HHHHHHHHHHcCCCcEEEEEe
Confidence                 000    00               135667789999999998877

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.19  E-value=1.8e-06  Score=81.21  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=68.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|.+++.+..        .         ..+|+..|+-......+-+.+..           ... ++ 
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~--------~---------g~~v~~vD~s~~~~~~a~~~~~~-----------~~~-~~-  169 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSL--------L---------GYDVTSWDHNENSIAFLNETKEK-----------ENL-NI-  169 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHH-----------TTC-CE-
T ss_pred             CCCcEEEECCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHH-----------cCC-ce-
Confidence            357899999999999887752        1         25788888854433333322211           001 11 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++.. +-+++++|+|+|+.++||++. |                                   ++..+|+.-.+
T Consensus       170 -~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~-~-----------------------------------~~~~~l~~~~~  211 (286)
T 3m70_A          170 -STALYDINA-ANIQENYDFIVSTVVFMFLNR-E-----------------------------------RVPSIIKNMKE  211 (286)
T ss_dssp             -EEEECCGGG-CCCCSCEEEEEECSSGGGSCG-G-----------------------------------GHHHHHHHHHH
T ss_pred             -EEEEecccc-ccccCCccEEEEccchhhCCH-H-----------------------------------HHHHHHHHHHH
Confidence             122235433 333899999999999999843 1                                   13346677789


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      -|+|||++++.....
T Consensus       212 ~LkpgG~l~i~~~~~  226 (286)
T 3m70_A          212 HTNVGGYNLIVAAMS  226 (286)
T ss_dssp             TEEEEEEEEEEEEBC
T ss_pred             hcCCCcEEEEEEecC
Confidence            999999988766544

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.17  E-value=1e-05  Score=69.04  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=70.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.+..              .|..+++..|+.. ..     .++               +--+
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~--------------~~~~~v~~~D~~~-~~-----~~~---------------~~~~   66 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQI--------------GGKGRIIACDLLP-MD-----PIV---------------GVDF   66 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHH--------------CTTCEEEEEESSC-CC-----CCT---------------TEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHh--------------CCCCeEEEEECcc-cc-----ccC---------------cEEE
Confidence            34699999999999888776332              1346888888743 21     111               0112


Q ss_pred             eccccCccccc--------cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRR--------LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLA  216 (385)
Q Consensus       145 ~~~vpgSFy~r--------LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~  216 (385)
                      .   .+++.+-        .++++++|+++++..+||........                           ........
T Consensus        67 ~---~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~---------------------------~~~~~~~~  116 (180)
T 1ej0_A           67 L---QGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDI---------------------------PRAMYLVE  116 (180)
T ss_dssp             E---ESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHH---------------------------HHHHHHHH
T ss_pred             E---EcccccchhhhhhhccCCCCceeEEEECCCccccCCCccch---------------------------HHHHHHHH
Confidence            2   2233322        17889999999999999976532111                           01122346


Q ss_pred             HHHHHHHhhhccCCeEEEEeccC
Q 016644          217 AFLGARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       217 ~FL~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .+|+.-.+-|+|||++++.....
T Consensus       117 ~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A          117 LALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEESS
T ss_pred             HHHHHHHHHcCCCcEEEEEEecC
Confidence            77787889999999999987654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.16  E-value=4e-06  Score=74.79  Aligned_cols=103  Identities=13%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.        + .       +..+++..|+........-+.+..           ....++ 
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~--------~-~-------~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~v-  111 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAH--------K-L-------GAKSVLATDISDESMTAAEENAAL-----------NGIYDI-  111 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHH--------H-T-------TCSEEEEEESCHHHHHHHHHHHHH-----------TTCCCC-
T ss_pred             CCCEEEEECCCCCHHHHHHH--------H-C-------CCCEEEEEECCHHHHHHHHHHHHH-----------cCCCce-
Confidence            35799999999998877753        1 1       235888888854333332222210           001111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++..  ++++++|+|+++..+||+                                         ..+|+.-.+
T Consensus       112 -~~~~~d~~~--~~~~~fD~i~~~~~~~~~-----------------------------------------~~~l~~~~~  147 (205)
T 3grz_A          112 -ALQKTSLLA--DVDGKFDLIVANILAEIL-----------------------------------------LDLIPQLDS  147 (205)
T ss_dssp             -EEEESSTTT--TCCSCEEEEEEESCHHHH-----------------------------------------HHHGGGSGG
T ss_pred             -EEEeccccc--cCCCCceEEEECCcHHHH-----------------------------------------HHHHHHHHH
Confidence             122335433  457899999999877764                                         123344578


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      -|+|||++++.....
T Consensus       148 ~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          148 HLNEDGQVIFSGIDY  162 (205)
T ss_dssp             GEEEEEEEEEEEEEG
T ss_pred             hcCCCCEEEEEecCc
Confidence            899999999865443

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.16  E-value=7.2e-06  Score=78.68  Aligned_cols=147  Identities=13%  Similarity=0.119  Sum_probs=85.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||||..|..+.+        +        ..-+|+--|+-.++.....+.-+...       ... ..++-
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~--------~--------ga~~V~aVDvs~~mL~~a~r~~~rv~-------~~~-~~ni~  140 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQ--------N--------GAKLVYAVDVGTNQLVWKLRQDDRVR-------SME-QYNFR  140 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEECSSSSCSCHHHHTCTTEE-------EEC-SCCGG
T ss_pred             cccEEEecCCCccHHHHHHHh--------C--------CCCEEEEEECCHHHHHHHHHhCcccc-------eec-ccCce
Confidence            346899999999999987752        1        22589999998776554222221100       000 00110


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                        -++    ..-+|..++|++.+..++||+..+-                                         ..-++
T Consensus       141 --~l~----~~~l~~~~fD~v~~d~sf~sl~~vL-----------------------------------------~e~~r  173 (291)
T 3hp7_A          141 --YAE----PVDFTEGLPSFASIDVSFISLNLIL-----------------------------------------PALAK  173 (291)
T ss_dssp             --GCC----GGGCTTCCCSEEEECCSSSCGGGTH-----------------------------------------HHHHH
T ss_pred             --ecc----hhhCCCCCCCEEEEEeeHhhHHHHH-----------------------------------------HHHHH
Confidence              000    1125677899999999999873322                                         23478


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||+|++.+- .. ....      ...   +.       ..|.+..       ...+..+.+++...++..| |.+.
T Consensus       174 vLkpGG~lv~lvk-Pq-fe~~------~~~---~~-------~~G~vrd-------~~~~~~~~~~v~~~~~~~G-f~v~  227 (291)
T 3hp7_A          174 ILVDGGQVVALVK-PQ-FEAG------REQ---IG-------KNGIVRE-------SSIHEKVLETVTAFAVDYG-FSVK  227 (291)
T ss_dssp             HSCTTCEEEEEEC-GG-GTSC------GGG---CC--------CCCCCC-------HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred             HcCcCCEEEEEEC-cc-cccC------hhh---cC-------CCCccCC-------HHHHHHHHHHHHHHHHHCC-CEEE
Confidence            9999999998741 11 0000      000   00       1233221       1124457888999999999 9887


Q ss_pred             EEEE
Q 016644          305 KLEV  308 (385)
Q Consensus       305 ~le~  308 (385)
                      .+..
T Consensus       228 ~~~~  231 (291)
T 3hp7_A          228 GLDF  231 (291)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7664

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.16  E-value=7.4e-06  Score=71.54  Aligned_cols=73  Identities=16%  Similarity=0.077  Sum_probs=48.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+..                 .- +|+.-|+-......    .+               +--| 
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~-----------------~~-~v~gvD~s~~~~~~----~~---------------~~~~-   65 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRK-----------------RN-TVVSTDLNIRALES----HR---------------GGNL-   65 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTT-----------------TS-EEEEEESCHHHHHT----CS---------------SSCE-
T ss_pred             CCeEEEeccCccHHHHHHHh-----------------cC-cEEEEECCHHHHhc----cc---------------CCeE-
Confidence            45999999999998887751                 11 78888874322221    11               1112 


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCch
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPE  179 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~  179 (385)
                        +-+++.+ .++++++|+++|+..+||.++.+.
T Consensus        66 --~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~   96 (170)
T 3q87_B           66 --VRADLLC-SINQESVDVVVFNPPYVPDTDDPI   96 (170)
T ss_dssp             --EECSTTT-TBCGGGCSEEEECCCCBTTCCCTT
T ss_pred             --EECChhh-hcccCCCCEEEECCCCccCCcccc
Confidence              2335555 566799999999999999877543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.15  E-value=7.7e-06  Score=75.12  Aligned_cols=122  Identities=15%  Similarity=0.202  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh
Q 016644           43 SMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ  122 (385)
Q Consensus        43 ~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~  122 (385)
                      ....++++.++....      .+..+|+|+|||+|..++.+..        .         ..+|+..|+-.......-+
T Consensus        25 ~~~~~~~~~~~~~~~------~~~~~vLDlGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~l~~a~~   81 (252)
T 1wzn_A           25 AEIDFVEEIFKEDAK------REVRRVLDLACGTGIPTLELAE--------R---------GYEVVGLDLHEEMLRVARR   81 (252)
T ss_dssp             HHHHHHHHHHHHTCS------SCCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc------cCCCEEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHH
Confidence            334555555544321      2357999999999998887752        1         2578888875444333322


Q ss_pred             cCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEccc-ccccccCCchhhhcccccccCCCceEEcCCCH
Q 016644          123 LLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAF-SLHWLSQVPESALDKRSMAYNKGKVYIHGANE  201 (385)
Q Consensus       123 ~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~-alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~  201 (385)
                      .+..           ...+--|+   .+++.+ +-+++++|+|++.. ++|+++.                         
T Consensus        82 ~~~~-----------~~~~v~~~---~~d~~~-~~~~~~fD~v~~~~~~~~~~~~-------------------------  121 (252)
T 1wzn_A           82 KAKE-----------RNLKIEFL---QGDVLE-IAFKNEFDAVTMFFSTIMYFDE-------------------------  121 (252)
T ss_dssp             HHHH-----------TTCCCEEE---ESCGGG-CCCCSCEEEEEECSSGGGGSCH-------------------------
T ss_pred             HHHh-----------cCCceEEE---ECChhh-cccCCCccEEEEcCCchhcCCH-------------------------
Confidence            2210           00111122   235433 33457899999863 4555421                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEecc
Q 016644          202 HTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       202 ~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                                 .|...+|+.-++-|+|||++++.+..
T Consensus       122 -----------~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          122 -----------EDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             -----------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----------HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence                       13556677788999999999988754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.13  E-value=4e-06  Score=74.58  Aligned_cols=121  Identities=12%  Similarity=0.043  Sum_probs=74.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+..        ..       +. +++..|+-.......-+.+...            .+--+
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~--------~~-------~~-~v~~~D~s~~~~~~a~~~~~~~------------~~i~~   93 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFL--------GG-------FP-NVTSVDYSSVVVAAMQACYAHV------------PQLRW   93 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHH--------TT-------CC-CEEEEESCHHHHHHHHHHTTTC------------TTCEE
T ss_pred             CCCeEEEECCCCcHHHHHHHH--------cC-------CC-cEEEEeCCHHHHHHHHHhcccC------------CCcEE
Confidence            357899999999999887752        11       22 7888887544444333333210            01112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++.+--++++++|+|+++.++|.+......       .|+.        .        .....|...+|+.-.+
T Consensus        94 ~~---~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~-------~~~~--------~--------~~~~~~~~~~l~~~~~  147 (215)
T 2pxx_A           94 ET---MDVRKLDFPSASFDVVLEKGTLDALLAGERD-------PWTV--------S--------SEGVHTVDQVLSEVSR  147 (215)
T ss_dssp             EE---CCTTSCCSCSSCEEEEEEESHHHHHTTTCSC-------TTSC--------C--------HHHHHHHHHHHHHHHH
T ss_pred             EE---cchhcCCCCCCcccEEEECcchhhhcccccc-------cccc--------c--------cchhHHHHHHHHHHHH
Confidence            22   2433323678999999999999876422111       0100        0        1123466778888899


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      -|+|||++++..++.
T Consensus       148 ~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          148 VLVPGGRFISMTSAA  162 (215)
T ss_dssp             HEEEEEEEEEEESCC
T ss_pred             hCcCCCEEEEEeCCC
Confidence            999999999998776

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.08  E-value=2.6e-06  Score=74.95  Aligned_cols=106  Identities=19%  Similarity=0.272  Sum_probs=65.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..+..+..        .         ..+++..|+-......+-+.+..           ....++  
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~--   82 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAA--------N---------GYDVDAWDKNAMSIANVERIKSI-----------ENLDNL--   82 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHH-----------HTCTTE--
T ss_pred             CCeEEEEcCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHh-----------CCCCCc--
Confidence            46999999999998887652        1         24788888754333322222110           001111  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+.+++.+--+ ++++|+|+++.++||++.  .                                  |+..+|+.-.+-
T Consensus        83 ~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~--~----------------------------------~~~~~l~~~~~~  125 (199)
T 2xvm_A           83 HTRVVDLNNLTF-DRQYDFILSTVVLMFLEA--K----------------------------------TIPGLIANMQRC  125 (199)
T ss_dssp             EEEECCGGGCCC-CCCEEEEEEESCGGGSCG--G----------------------------------GHHHHHHHHHHT
T ss_pred             EEEEcchhhCCC-CCCceEEEEcchhhhCCH--H----------------------------------HHHHHHHHHHHh
Confidence            112235443224 889999999999999852  1                                  134456677899


Q ss_pred             hccCCeEEEEecc
Q 016644          226 MKRCGSMFLVCLG  238 (385)
Q Consensus       226 L~pGG~lvl~~~g  238 (385)
                      |+|||++++....
T Consensus       126 L~~gG~l~~~~~~  138 (199)
T 2xvm_A          126 TKPGGYNLIVAAM  138 (199)
T ss_dssp             EEEEEEEEEEEEB
T ss_pred             cCCCeEEEEEEee
Confidence            9999998776543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.08  E-value=5.6e-06  Score=75.36  Aligned_cols=136  Identities=10%  Similarity=-0.026  Sum_probs=79.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...                 ..+|+..|+-.......-+..+               +--|
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~~~---------------~~~~   95 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQ-----------------AARWAAYDFSPELLKLARANAP---------------HADV   95 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG-----------------SSEEEEEESCHHHHHHHHHHCT---------------TSEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-----------------CCEEEEEECCHHHHHHHHHhCC---------------CceE
Confidence            3579999999999988777521                 2478888875443333333321               1112


Q ss_pred             eccccCcccccc-CC-CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FP-TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP-~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +.   +++.+.+ ++ ++++|+|+|+      .+.+..+                                      +..
T Consensus        96 ~~---~d~~~~~~~~~~~~fD~v~~~------~~~~~~l--------------------------------------~~~  128 (226)
T 3m33_A           96 YE---WNGKGELPAGLGAPFGLIVSR------RGPTSVI--------------------------------------LRL  128 (226)
T ss_dssp             EE---CCSCSSCCTTCCCCEEEEEEE------SCCSGGG--------------------------------------GGH
T ss_pred             EE---cchhhccCCcCCCCEEEEEeC------CCHHHHH--------------------------------------HHH
Confidence            22   3554445 56 8899999997      2222222                                      345


Q ss_pred             HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHh
Q 016644          223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEA  297 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~  297 (385)
                      .+-|+|||+|+ ...+..            .. +.+.+.   +...| +....++....+.++++.++++...+-
T Consensus       129 ~~~LkpgG~l~-~~~~~~------------~~-~~~~~~---l~~~G-f~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (226)
T 3m33_A          129 PELAAPDAHFL-YVGPRL------------NV-PEVPER---LAAVG-WDIVAEDHVSVLAHAPTWEDWQMRGEF  185 (226)
T ss_dssp             HHHEEEEEEEE-EEESSS------------CC-THHHHH---HHHTT-CEEEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHcCCCcEEE-EeCCcC------------CH-HHHHHH---HHHCC-CeEEEEEeeeecccCcCHHHHhhhHHh
Confidence            78999999998 222211            00 112222   23345 444555666777888888877654443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.04  E-value=8.2e-06  Score=74.94  Aligned_cols=34  Identities=18%  Similarity=-0.005  Sum_probs=26.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP  113 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp  113 (385)
                      +.-+|+|+|||+|.+++.+..        +.       |..+|+--|+-
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~--------~~-------~~~~v~GvD~s   57 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAI--------ND-------QNTFYIGIDPV   57 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHH--------TC-------TTEEEEEECSC
T ss_pred             CCCEEEEEeccCcHHHHHHHH--------hC-------CCCEEEEEeCC
Confidence            457899999999998887752        11       56889999986

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.04  E-value=9.7e-06  Score=74.18  Aligned_cols=110  Identities=11%  Similarity=0.086  Sum_probs=67.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|.++..+.        +.        ..-+|+.-|+-.......-+....           . ..++ 
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~--------~~--------~~~~v~gvD~s~~~l~~a~~~~~~-----------~-~~~v-  110 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQ--------EA--------PIDEHWIIECNDGVFQRLRDWAPR-----------Q-THKV-  110 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHH--------TS--------CEEEEEEEECCHHHHHHHHHHGGG-----------C-SSEE-
T ss_pred             CCCeEEEEeccCCHHHHHHH--------hc--------CCCeEEEEcCCHHHHHHHHHHHHh-----------c-CCCe-
Confidence            45899999999999887764        11        124788888865444443332211           0 0122 


Q ss_pred             eccccCccccc--cCCCCcccEEEc-ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRR--LFPTRSIDFFHS-AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       145 ~~~vpgSFy~r--LfP~~Svd~~~S-s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                       ..+-+++.+-  -+|++++|+|++ .++++ ......                                 .++..+|+.
T Consensus       111 -~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~-~~~~~~---------------------------------~~~~~~l~~  155 (236)
T 1zx0_A          111 -IPLKGLWEDVAPTLPDGHFDGILYDTYPLS-EETWHT---------------------------------HQFNFIKNH  155 (236)
T ss_dssp             -EEEESCHHHHGGGSCTTCEEEEEECCCCCB-GGGTTT---------------------------------HHHHHHHHT
T ss_pred             -EEEecCHHHhhcccCCCceEEEEECCcccc-hhhhhh---------------------------------hhHHHHHHH
Confidence             1223454433  378899999999 66652 222111                                 134557777


Q ss_pred             HHhhhccCCeEEEEecc
Q 016644          222 RSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g  238 (385)
                      -++-|+|||+|++..+.
T Consensus       156 ~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          156 AFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             HHHHEEEEEEEEECCHH
T ss_pred             HHHhcCCCeEEEEEecC
Confidence            88999999999876543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.03  E-value=1.5e-05  Score=73.73  Aligned_cols=123  Identities=9%  Similarity=0.133  Sum_probs=66.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..++.+..        .+       |...++--|+-.......-+.+...    .. .......++ 
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~--------~~-------p~~~v~GiDis~~~l~~A~~~~~~l----~~-~~~~~~~nv~  105 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSP--------LF-------PDTLILGLEIRVKVSDYVQDRIRAL----RA-APAGGFQNIA  105 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGG--------GS-------TTSEEEEEESCHHHHHHHHHHHHHH----HH-STTCCCTTEE
T ss_pred             CCCeEEEEccCCcHHHHHHHH--------HC-------CCCeEEEEECCHHHHHHHHHHHHHH----HH-HHhcCCCeEE
Confidence            457899999999999887752        22       5678888887544333221111000    00 000011222 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |+.+-...+....|+++++|.+++.+.-.|......           |.++                   ....||+.-+
T Consensus       106 ~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~-----------krr~-------------------~~~~~l~~~~  155 (235)
T 3ckk_A          106 CLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKH-----------KWRI-------------------ISPTLLAEYA  155 (235)
T ss_dssp             EEECCTTTCHHHHCCTTCEEEEEEESCC----------------------C-------------------CCHHHHHHHH
T ss_pred             EEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhh-----------hhhh-------------------hhHHHHHHHH
Confidence            333311122334588999999998877667432100           0000                   0134667778


Q ss_pred             hhhccCCeEEEEec
Q 016644          224 KEMKRCGSMFLVCL  237 (385)
Q Consensus       224 ~EL~pGG~lvl~~~  237 (385)
                      +-|+|||+|++..-
T Consensus       156 ~~LkpGG~l~~~td  169 (235)
T 3ckk_A          156 YVLRVGGLVYTITD  169 (235)
T ss_dssp             HHEEEEEEEEEEES
T ss_pred             HHCCCCCEEEEEeC
Confidence            99999999998763

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.00  E-value=3e-05  Score=69.05  Aligned_cols=105  Identities=14%  Similarity=0.055  Sum_probs=65.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        ..       |..+|+..|.-..-...+-+.+..          . ...++ 
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~--------~~-------~~~~v~~vD~s~~~~~~a~~~~~~----------~-~~~~v-   92 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASN--------LM-------PNGRIFALERNPQYLGFIRDNLKK----------F-VARNV-   92 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH--------HC-------TTSEEEEEECCHHHHHHHHHHHHH----------H-TCTTE-
T ss_pred             CCCEEEEECCCCCHHHHHHHH--------HC-------CCCEEEEEeCCHHHHHHHHHHHHH----------h-CCCcE-
Confidence            357999999999999887762        22       557889999854333333222210          0 01121 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-+++.+.+.+..++|++++..+++   .                                      ...+|..-.+
T Consensus        93 -~~~~~d~~~~~~~~~~~D~i~~~~~~~---~--------------------------------------~~~~l~~~~~  130 (204)
T 3e05_A           93 -TLVEAFAPEGLDDLPDPDRVFIGGSGG---M--------------------------------------LEEIIDAVDR  130 (204)
T ss_dssp             -EEEECCTTTTCTTSCCCSEEEESCCTT---C--------------------------------------HHHHHHHHHH
T ss_pred             -EEEeCChhhhhhcCCCCCEEEECCCCc---C--------------------------------------HHHHHHHHHH
Confidence             123345555554557899999887765   1                                      2234566778


Q ss_pred             hhccCCeEEEEecc
Q 016644          225 EMKRCGSMFLVCLG  238 (385)
Q Consensus       225 EL~pGG~lvl~~~g  238 (385)
                      -|+|||++++....
T Consensus       131 ~LkpgG~l~~~~~~  144 (204)
T 3e05_A          131 RLKSEGVIVLNAVT  144 (204)
T ss_dssp             HCCTTCEEEEEECB
T ss_pred             hcCCCeEEEEEecc
Confidence            89999999987644

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.96  E-value=6e-05  Score=65.46  Aligned_cols=107  Identities=14%  Similarity=0.160  Sum_probs=68.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc--
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS--  142 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~--  142 (385)
                      +..+|+|+|||+|..++.+...                 ..+++..|+-......+-+.+..           ....+  
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~-----------------~~~v~~~D~~~~~~~~a~~~~~~-----------~~~~~~~  103 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE-----------------VKSTTMADINRRAIKLAKENIKL-----------NNLDNYD  103 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG-----------------SSEEEEEESCHHHHHHHHHHHHH-----------TTCTTSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-----------------CCeEEEEECCHHHHHHHHHHHHH-----------cCCCccc
Confidence            4578999999999988876521                 25788888754333333222210           00111  


Q ss_pred             eeeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          143 YFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       143 ~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +  ..+.+++.+ .++++++|+|+++..+||-                                     ..++..+|+.-
T Consensus       104 ~--~~~~~d~~~-~~~~~~~D~v~~~~~~~~~-------------------------------------~~~~~~~l~~~  143 (194)
T 1dus_A          104 I--RVVHSDLYE-NVKDRKYNKIITNPPIRAG-------------------------------------KEVLHRIIEEG  143 (194)
T ss_dssp             E--EEEECSTTT-TCTTSCEEEEEECCCSTTC-------------------------------------HHHHHHHHHHH
T ss_pred             e--EEEECchhc-ccccCCceEEEECCCcccc-------------------------------------hhHHHHHHHHH
Confidence            2  112235444 4568899999999888871                                     11345667778


Q ss_pred             HhhhccCCeEEEEeccC
Q 016644          223 SKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~  239 (385)
                      .+-|+|||++++.....
T Consensus       144 ~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          144 KELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             HHHEEEEEEEEEEEEST
T ss_pred             HHHcCCCCEEEEEECCC
Confidence            89999999999998765

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.96  E-value=1.9e-06  Score=77.87  Aligned_cols=87  Identities=16%  Similarity=0.108  Sum_probs=56.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      .+.+|+|+|||+|+.++.++.               ..|..+++..|.-...-...-+.+...          +...++-
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~---------------~~p~a~~~A~Di~~~~leiar~~~~~~----------g~~~~v~  103 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWN---------------ENEKIIYHAYDIDRAEIAFLSSIIGKL----------KTTIKYR  103 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHC---------------SSCCCEEEEECSCHHHHHHHHHHHHHS----------CCSSEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHh---------------cCCCCEEEEEeCCHHHHHHHHHHHHhc----------CCCccEE
Confidence            468999999999999998862               237789999998544333332222110          0011222


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESA  181 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l  181 (385)
                      +    .++-.. .|+.++|+|.++..||-|.+.+..+
T Consensus       104 ~----~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~al  135 (200)
T 3fzg_A          104 F----LNKESD-VYKGTYDVVFLLKMLPVLKQQDVNI  135 (200)
T ss_dssp             E----ECCHHH-HTTSEEEEEEEETCHHHHHHTTCCH
T ss_pred             E----eccccc-CCCCCcChhhHhhHHHhhhhhHHHH
Confidence            2    243333 7899999999999999996655554

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.94  E-value=2.4e-05  Score=68.89  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHh--cCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEA--SGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS  142 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~--~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~  142 (385)
                      +..+|+|+|||+|..++.+...        +..  .....|..+|+..|+....      .++.               .
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~--------~~~~~~~~~~~~~~v~~vD~s~~~------~~~~---------------~   72 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQK--------VNAAGTDPSSPVGFVLGVDLLHIF------PLEG---------------A   72 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHH--------TTTTCCCTTSCCCEEEEECSSCCC------CCTT---------------C
T ss_pred             CCCEEEEeCCCCCHHHHHHHHH--------hccccccccCCCceEEEEechhcc------cCCC---------------C
Confidence            3479999999999999887632        210  0001123688888985410      0110               0


Q ss_pred             eeeccccCcccc--------ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHH
Q 016644          143 YFAAGVPGSFYR--------RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTD  214 (385)
Q Consensus       143 ~f~~~vpgSFy~--------rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D  214 (385)
                      -+.  ..+++..        ..++++++|+|+|..++||.-..   ..+                 +       ....+.
T Consensus        73 ~~~--~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~---~~~-----------------~-------~~~~~~  123 (196)
T 2nyu_A           73 TFL--CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFR---DLD-----------------H-------DRLISL  123 (196)
T ss_dssp             EEE--CSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCH---HHH-----------------H-------HHHHHH
T ss_pred             eEE--EeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCc---ccC-----------------H-------HHHHHH
Confidence            111  0223221        23567899999998777764221   000                 0       011123


Q ss_pred             HHHHHHHHHhhhccCCeEEEEeccC
Q 016644          215 LAAFLGARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       215 ~~~FL~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      ...+|+.-.+-|+|||+|++..+..
T Consensus       124 ~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A          124 CLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCC
Confidence            3566777789999999999987543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.94  E-value=7e-06  Score=72.83  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=64.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...        .       |..+++.-|+-.......-+.+...           .. +  
T Consensus        30 ~~~~vLDiG~G~G~~~~~l~~~--------~-------~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~-~--   80 (215)
T 4dzr_A           30 SGTRVIDVGTGSGCIAVSIALA--------C-------PGVSVTAVDLSMDALAVARRNAERF-----------GA-V--   80 (215)
T ss_dssp             TTEEEEEEESSBCHHHHHHHHH--------C-------TTEEEEEEECC-------------------------------
T ss_pred             CCCEEEEecCCHhHHHHHHHHh--------C-------CCCeEEEEECCHHHHHHHHHHHHHh-----------CC-c--
Confidence            4689999999999988887632        2       4578999998554433332222210           00 1  


Q ss_pred             eccccCccccccCCC-----CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPT-----RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~-----~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      +..+-+++.+ .+++     +++|+|+++-.+++.........+..  .+          .+...-.-.....+.+..||
T Consensus        81 ~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~l  147 (215)
T 4dzr_A           81 VDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVR--DY----------EPRLALDGGEDGLQFYRRMA  147 (215)
T ss_dssp             --CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------------------CTTHHHHHHH
T ss_pred             eEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhh--cc----------CccccccCCCcHHHHHHHHH
Confidence            1123335444 4555     99999999877766543321100000  00          00000000001122346788


Q ss_pred             HHHHhhhccCCeEEEEecc
Q 016644          220 GARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g  238 (385)
                      +.-.+-|+|||+|++...+
T Consensus       148 ~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          148 ALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             TCCGGGBCSSSEEEEEECT
T ss_pred             HHHHHHhcCCCeEEEEEEC
Confidence            8889999999994444433

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.93  E-value=6.8e-06  Score=81.47  Aligned_cols=112  Identities=13%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+..        .+       |..+|+..|.-.......-+++...        ......++  
T Consensus       223 ~~~VLDlGcG~G~~s~~la~--------~~-------p~~~V~gvD~s~~al~~Ar~n~~~n--------gl~~~~~v--  277 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLD--------KN-------PQAKVVFVDESPMAVASSRLNVETN--------MPEALDRC--  277 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHH--------HC-------TTCEEEEEESCHHHHHHHHHHHHHH--------CGGGGGGE--
T ss_pred             CCeEEEEeCcchHHHHHHHH--------HC-------CCCEEEEEECcHHHHHHHHHHHHHc--------CCCcCceE--
Confidence            37999999999999988863        22       5678999998433333222222110        00000112  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+-+++++ -+|++++|+|+|+-.+|+....+...                                 ...||+.-.+-
T Consensus       278 ~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~---------------------------------~~~~l~~~~~~  323 (375)
T 4dcm_A          278 EFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNV---------------------------------AWEMFHHARRC  323 (375)
T ss_dssp             EEEECSTTT-TCCTTCEEEEEECCCC-------CCH---------------------------------HHHHHHHHHHH
T ss_pred             EEEechhhc-cCCCCCeeEEEECCCcccCcccCHHH---------------------------------HHHHHHHHHHh
Confidence            112345555 46889999999999999854443322                                 12466777889


Q ss_pred             hccCCeEEEEe
Q 016644          226 MKRCGSMFLVC  236 (385)
Q Consensus       226 L~pGG~lvl~~  236 (385)
                      |+|||+|+++.
T Consensus       324 LkpgG~l~iv~  334 (375)
T 4dcm_A          324 LKINGELYIVA  334 (375)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            99999999975

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.92  E-value=1e-05  Score=72.23  Aligned_cols=100  Identities=8%  Similarity=-0.028  Sum_probs=65.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+...                 ..+|+.-|.-..-....-+.+..           ....++ 
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~-----------------~~~v~~vD~~~~~~~~a~~~~~~-----------~~~~~v-  127 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHL-----------------VQHVCSVERIKGLQWQARRRLKN-----------LDLHNV-  127 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH-----------------SSEEEEEESCHHHHHHHHHHHHH-----------TTCCSE-
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh-----------------CCEEEEEecCHHHHHHHHHHHHH-----------cCCCce-
Confidence            4579999999999998877521                 14677888754333333222211           001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-++..+.+.+.+++|+|+++.++||+.+   .                                         -.+
T Consensus       128 -~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~---~-----------------------------------------~~~  162 (210)
T 3lbf_A          128 -STRHGDGWQGWQARAPFDAIIVTAAPPEIPT---A-----------------------------------------LMT  162 (210)
T ss_dssp             -EEEESCGGGCCGGGCCEEEEEESSBCSSCCT---H-----------------------------------------HHH
T ss_pred             -EEEECCcccCCccCCCccEEEEccchhhhhH---H-----------------------------------------HHH
Confidence             1233465665667789999999999998643   2                                         156


Q ss_pred             hhccCCeEEEEecc
Q 016644          225 EMKRCGSMFLVCLG  238 (385)
Q Consensus       225 EL~pGG~lvl~~~g  238 (385)
                      -|+|||+|++.+..
T Consensus       163 ~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          163 QLDEGGILVLPVGE  176 (210)
T ss_dssp             TEEEEEEEEEEECS
T ss_pred             hcccCcEEEEEEcC
Confidence            79999999999866

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.91  E-value=1.3e-05  Score=79.76  Aligned_cols=108  Identities=17%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        .         ..+|+..|.-.......-+++..           .....-|
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~--------~---------g~~V~gvDis~~al~~A~~n~~~-----------~~~~v~~  284 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLAR--------M---------GAEVVGVEDDLASVLSLQKGLEA-----------NALKAQA  284 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHH--------T---------TCEEEEEESBHHHHHHHHHHHHH-----------TTCCCEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHH-----------cCCCeEE
Confidence            357999999999999988862        1         24788888743333322222211           0011112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                         +-+++.+-+.+++++|+|+|+..+||......                                 .+...||..-.+
T Consensus       285 ---~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~---------------------------------~~~~~~l~~~~~  328 (381)
T 3dmg_A          285 ---LHSDVDEALTEEARFDIIVTNPPFHVGGAVIL---------------------------------DVAQAFVNVAAA  328 (381)
T ss_dssp             ---EECSTTTTSCTTCCEEEEEECCCCCTTCSSCC---------------------------------HHHHHHHHHHHH
T ss_pred             ---EEcchhhccccCCCeEEEEECCchhhcccccH---------------------------------HHHHHHHHHHHH
Confidence               23466666666799999999999998544332                                 235567788889


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+|||+++++.
T Consensus       329 ~LkpGG~l~iv~  340 (381)
T 3dmg_A          329 RLRPGGVFFLVS  340 (381)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             hcCcCcEEEEEE
Confidence            999999999875

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.90  E-value=2.9e-06  Score=82.72  Aligned_cols=108  Identities=12%  Similarity=0.155  Sum_probs=70.3

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+..        ..       |..+|+..|.........-+.+..           .....-+ 
T Consensus       197 ~~~VLDlGcG~G~~~~~la~--------~~-------~~~~v~~vD~s~~~l~~a~~~~~~-----------~~~~~~~-  249 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFAR--------HS-------PKIRLTLCDVSAPAVEASRATLAA-----------NGVEGEV-  249 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHH--------HC-------TTCBCEEEESBHHHHHHHHHHHHH-----------TTCCCEE-
T ss_pred             CCeEEEecCccCHHHHHHHH--------HC-------CCCEEEEEECCHHHHHHHHHHHHH-----------hCCCCEE-
Confidence            35899999999999987752        22       557889999754333332222210           0011112 


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                        +.++++.  ++++++|+|+|+..+||.-..                                 ...+...||+.-.+-
T Consensus       250 --~~~d~~~--~~~~~fD~Iv~~~~~~~g~~~---------------------------------~~~~~~~~l~~~~~~  292 (343)
T 2pjd_A          250 --FASNVFS--EVKGRFDMIISNPPFHDGMQT---------------------------------SLDAAQTLIRGAVRH  292 (343)
T ss_dssp             --EECSTTT--TCCSCEEEEEECCCCCSSSHH---------------------------------HHHHHHHHHHHHGGG
T ss_pred             --EEccccc--cccCCeeEEEECCCcccCccC---------------------------------CHHHHHHHHHHHHHh
Confidence              3345544  347899999999999984221                                 123567788889999


Q ss_pred             hccCCeEEEEec
Q 016644          226 MKRCGSMFLVCL  237 (385)
Q Consensus       226 L~pGG~lvl~~~  237 (385)
                      |+|||+|++...
T Consensus       293 LkpgG~l~i~~~  304 (343)
T 2pjd_A          293 LNSGGELRIVAN  304 (343)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CCCCcEEEEEEc
Confidence            999999998753

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.88  E-value=1.3e-05  Score=74.72  Aligned_cols=100  Identities=16%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.        +..       +  +|+..|+-.......-++...           ....   
T Consensus       120 ~~~~VLDiGcG~G~l~~~la--------~~g-------~--~v~gvDi~~~~v~~a~~n~~~-----------~~~~---  168 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAE--------KLG-------G--KALGVDIDPMVLPQAEANAKR-----------NGVR---  168 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HTT-------C--EEEEEESCGGGHHHHHHHHHH-----------TTCC---
T ss_pred             CCCEEEEecCCCcHHHHHHH--------HhC-------C--eEEEEECCHHHHHHHHHHHHH-----------cCCc---
Confidence            34789999999999887654        111       3  888889855444433332210           0011   


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +..+-+++.. .+|++++|+++++...|++                                         ..++..-.+
T Consensus       169 v~~~~~d~~~-~~~~~~fD~Vv~n~~~~~~-----------------------------------------~~~l~~~~~  206 (254)
T 2nxc_A          169 PRFLEGSLEA-ALPFGPFDLLVANLYAELH-----------------------------------------AALAPRYRE  206 (254)
T ss_dssp             CEEEESCHHH-HGGGCCEEEEEEECCHHHH-----------------------------------------HHHHHHHHH
T ss_pred             EEEEECChhh-cCcCCCCCEEEECCcHHHH-----------------------------------------HHHHHHHHH
Confidence            1112234433 2578899999997655442                                         233455678


Q ss_pred             hhccCCeEEEEec
Q 016644          225 EMKRCGSMFLVCL  237 (385)
Q Consensus       225 EL~pGG~lvl~~~  237 (385)
                      -|+|||+++++..
T Consensus       207 ~LkpgG~lils~~  219 (254)
T 2nxc_A          207 ALVPGGRALLTGI  219 (254)
T ss_dssp             HEEEEEEEEEEEE
T ss_pred             HcCCCCEEEEEee
Confidence            8999999998753

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.87  E-value=2.3e-05  Score=70.98  Aligned_cols=79  Identities=13%  Similarity=0.037  Sum_probs=48.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+....                 .+|+.-|.-......+-+.+...             .++ 
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~-----------------~~v~~vD~~~~~~~~a~~~~~~~-------------~~v-  118 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV-----------------DKVVSVEINEKMYNYASKLLSYY-------------NNI-  118 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-----------------SEEEEEESCHHHHHHHHHHHTTC-------------SSE-
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc-----------------CEEEEEeCCHHHHHHHHHHHhhc-------------CCe-
Confidence            34699999999999988775211                 36777777443333333332210             011 


Q ss_pred             eccccCccccccCCCCcccEEEccccccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS  175 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS  175 (385)
                       ..+-+++...+.+++++|+|++..++|++.
T Consensus       119 -~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~  148 (231)
T 1vbf_A          119 -KLILGDGTLGYEEEKPYDRVVVWATAPTLL  148 (231)
T ss_dssp             -EEEESCGGGCCGGGCCEEEEEESSBBSSCC
T ss_pred             -EEEECCcccccccCCCccEEEECCcHHHHH
Confidence             122335444344578999999999999863

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.87  E-value=1.8e-05  Score=77.37  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.+        .        +..+|+.-|+. .....+-+.+..          ..-...+ 
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~--------~--------g~~~v~gvD~s-~~l~~a~~~~~~----------~~~~~~v-  117 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAK--------A--------GARKVIGIECS-SISDYAVKIVKA----------NKLDHVV-  117 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHH--------T--------TCSEEEEEECS-THHHHHHHHHHH----------TTCTTTE-
T ss_pred             CCCEEEEEeccchHHHHHHHH--------C--------CCCEEEEECcH-HHHHHHHHHHHH----------cCCCCcE-
Confidence            347899999999998887752        1        23588999985 322222222210          0001112 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-++..+--+|++++|+|+|....+++...+                                   ++..+|..+.+
T Consensus       118 -~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~-----------------------------------~~~~~l~~~~r  161 (349)
T 3q7e_A          118 -TIIKGKVEEVELPVEKVDIIISEWMGYCLFYES-----------------------------------MLNTVLHARDK  161 (349)
T ss_dssp             -EEEESCTTTCCCSSSCEEEEEECCCBBTBTBTC-----------------------------------CHHHHHHHHHH
T ss_pred             -EEEECcHHHccCCCCceEEEEEccccccccCch-----------------------------------hHHHHHHHHHH
Confidence             122335433347889999999987666653322                                   23456678899


Q ss_pred             hhccCCeEEE
Q 016644          225 EMKRCGSMFL  234 (385)
Q Consensus       225 EL~pGG~lvl  234 (385)
                      -|+|||+|+.
T Consensus       162 ~LkpgG~li~  171 (349)
T 3q7e_A          162 WLAPDGLIFP  171 (349)
T ss_dssp             HEEEEEEEES
T ss_pred             hCCCCCEEcc
Confidence            9999999973

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.85  E-value=3.6e-05  Score=71.44  Aligned_cols=98  Identities=23%  Similarity=0.318  Sum_probs=62.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+....               |..+++.-|+........-+..+.               ..|
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~  134 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADAL---------------PEITTFGLDVSKVAIKAAAKRYPQ---------------VTF  134 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC---------------TTSEEEEEESCHHHHHHHHHHCTT---------------SEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC---------------CCCeEEEEeCCHHHHHHHHHhCCC---------------cEE
Confidence            35789999999999998776321               346788888754433333222211               112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++..--++++++|+|+|+.+       |..+                                      +.-.+
T Consensus       135 ~~---~d~~~~~~~~~~fD~v~~~~~-------~~~l--------------------------------------~~~~~  166 (269)
T 1p91_A          135 CV---ASSHRLPFSDTSMDAIIRIYA-------PCKA--------------------------------------EELAR  166 (269)
T ss_dssp             EE---CCTTSCSBCTTCEEEEEEESC-------CCCH--------------------------------------HHHHH
T ss_pred             EE---cchhhCCCCCCceeEEEEeCC-------hhhH--------------------------------------HHHHH
Confidence            22   243222278899999998654       2222                                      33467


Q ss_pred             hhccCCeEEEEeccCC
Q 016644          225 EMKRCGSMFLVCLGRT  240 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~  240 (385)
                      -|+|||++++...+.+
T Consensus       167 ~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          167 VVKPGGWVITATPGPR  182 (269)
T ss_dssp             HEEEEEEEEEEEECTT
T ss_pred             hcCCCcEEEEEEcCHH
Confidence            8999999999987763

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.84  E-value=4.2e-05  Score=69.32  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=25.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      +..+|+|+|||+|..|..+...+               +.-+|+--|+-.
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~---------------~~~~V~gvD~s~   91 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIV---------------DEGIIYAVEYSA   91 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHT---------------TTSEEEEECCCH
T ss_pred             CCCEEEEECCcCCHHHHHHHHHc---------------CCCEEEEEECCH
Confidence            34689999999999888775322               235788888754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.82  E-value=6e-05  Score=69.54  Aligned_cols=42  Identities=19%  Similarity=0.125  Sum_probs=29.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHH
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNT  119 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~  119 (385)
                      +..+|+|+|||+|..++.+...+      ..       +..+|+..|+-......
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~------~~-------~~~~v~gvDis~~~l~~   92 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLH------RR-------SLRQVIASDVDPAPLEL   92 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHT------GG-------GEEEEEEEESCHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHh------cc-------CCCeEEEEECCHHHHHH
Confidence            46899999999998887776332      01       45789999985433333

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.81  E-value=3.4e-05  Score=67.98  Aligned_cols=109  Identities=15%  Similarity=0.075  Sum_probs=67.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..++.+.+        .        +..+|+.-|+-......+-+.+..           ....++ 
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~--------~--------~~~~v~~vD~~~~~~~~a~~~~~~-----------~~~~~v~   96 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALS--------R--------GAASVLFVESDQRSAAVIARNIEA-----------LGLSGAT   96 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH--------T--------TCSEEEEEECCHHHHHHHHHHHHH-----------HTCSCEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHH--------C--------CCCeEEEEECCHHHHHHHHHHHHH-----------cCCCceE
Confidence            347899999999999887652        1        235788889854443333332211           001122 


Q ss_pred             eeccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       144 f~~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      |+.   +++.+-+  ++++++|+|+++..+||...                                     |+..+|..
T Consensus        97 ~~~---~d~~~~~~~~~~~~fD~i~~~~p~~~~~~-------------------------------------~~~~~l~~  136 (189)
T 3p9n_A           97 LRR---GAVAAVVAAGTTSPVDLVLADPPYNVDSA-------------------------------------DVDAILAA  136 (189)
T ss_dssp             EEE---SCHHHHHHHCCSSCCSEEEECCCTTSCHH-------------------------------------HHHHHHHH
T ss_pred             EEE---ccHHHHHhhccCCCccEEEECCCCCcchh-------------------------------------hHHHHHHH
Confidence            222   3543322  46899999999988877411                                     23333344


Q ss_pred             HHh--hhccCCeEEEEeccCC
Q 016644          222 RSK--EMKRCGSMFLVCLGRT  240 (385)
Q Consensus       222 Ra~--EL~pGG~lvl~~~g~~  240 (385)
                      ..+  -|+|||++++....+.
T Consensus       137 ~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          137 LGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             HHHSSSCCTTCEEEEEEETTS
T ss_pred             HHhcCccCCCeEEEEEecCCC
Confidence            445  8999999999887664

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.79  E-value=5.3e-05  Score=74.88  Aligned_cols=107  Identities=14%  Similarity=0.163  Sum_probs=66.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.+        .        ..-+|+.-|+. +....+-+.+...          .-...+ 
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~--------~--------g~~~V~gvD~s-~~~~~a~~~~~~~----------~~~~~v-  114 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQ--------A--------GARKVYAVEAT-KMADHARALVKAN----------NLDHIV-  114 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHH--------T--------TCSEEEEEESS-TTHHHHHHHHHHT----------TCTTTE-
T ss_pred             CCCEEEEeccCcCHHHHHHHh--------c--------CCCEEEEEccH-HHHHHHHHHHHHc----------CCCCeE-
Confidence            457999999999998887752        1        11388999986 5444433322110          001111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-++..+-.+| +++|+|+|....|++...+                                   ++..+|..+.+
T Consensus       115 -~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~-----------------------------------~~~~~l~~~~~  157 (376)
T 3r0q_C          115 -EVIEGSVEDISLP-EKVDVIISEWMGYFLLRES-----------------------------------MFDSVISARDR  157 (376)
T ss_dssp             -EEEESCGGGCCCS-SCEEEEEECCCBTTBTTTC-----------------------------------THHHHHHHHHH
T ss_pred             -EEEECchhhcCcC-CcceEEEEcChhhcccchH-----------------------------------HHHHHHHHHHh
Confidence             1123354332345 9999999988777775321                                   24556788899


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+|||+|++..
T Consensus       158 ~LkpgG~li~~~  169 (376)
T 3r0q_C          158 WLKPTGVMYPSH  169 (376)
T ss_dssp             HEEEEEEEESSE
T ss_pred             hCCCCeEEEEec
Confidence            999999997654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.77  E-value=4.4e-05  Score=67.36  Aligned_cols=118  Identities=10%  Similarity=0.056  Sum_probs=68.2

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+...+              .|..+|+.-|+-.......-+.+...          .-..++  
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~--------------~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~v--   76 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLV--------------GENGRVFGFDIQDKAIANTTKKLTDL----------NLIDRV--   76 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHH--------------CTTCEEEEECSCHHHHHHHHHHHHHT----------TCGGGE--
T ss_pred             CCEEEEcCCCCCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHHHHc----------CCCCCe--
Confidence            4699999999999888876332              13458899998554444333322110          000122  


Q ss_pred             ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..+-+++.+-. ++++++|+++++..+..  .....+.                ..           .+|...+|+.-.+
T Consensus        77 ~~~~~d~~~~~~~~~~~fD~v~~~~~~~~--~~~~~~~----------------~~-----------~~~~~~~l~~~~~  127 (197)
T 3eey_A           77 TLIKDGHQNMDKYIDCPVKAVMFNLGYLP--SGDHSIS----------------TR-----------PETTIQALSKAME  127 (197)
T ss_dssp             EEECSCGGGGGGTCCSCEEEEEEEESBCT--TSCTTCB----------------CC-----------HHHHHHHHHHHHH
T ss_pred             EEEECCHHHHhhhccCCceEEEEcCCccc--Ccccccc----------------cC-----------cccHHHHHHHHHH
Confidence            12233543222 56799999999876611  1101000                00           1134457777889


Q ss_pred             hhccCCeEEEEecc
Q 016644          225 EMKRCGSMFLVCLG  238 (385)
Q Consensus       225 EL~pGG~lvl~~~g  238 (385)
                      -|+|||++++....
T Consensus       128 ~Lk~gG~l~~~~~~  141 (197)
T 3eey_A          128 LLVTGGIITVVIYY  141 (197)
T ss_dssp             HEEEEEEEEEEECC
T ss_pred             hCcCCCEEEEEEcc
Confidence            99999999988643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.75  E-value=4.6e-05  Score=68.24  Aligned_cols=84  Identities=8%  Similarity=0.001  Sum_probs=49.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+....              .|..+|+..|.-.+.....-+.+..          . ...++ 
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~----------~-~~~~v-  130 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIV--------------GEDGLVVSIERIPELAEKAERTLRK----------L-GYDNV-  130 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEEESCHHHHHHHHHHHHH----------H-TCTTE-
T ss_pred             CCCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHH----------c-CCCCe-
Confidence            35799999999999998776322              1346788888744333322222110          0 01111 


Q ss_pred             eccccCccccccCCCCcccEEEccccccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS  175 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS  175 (385)
                       ..+.+++...+.+.+++|+|+++.++|++.
T Consensus       131 -~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~  160 (215)
T 2yxe_A          131 -IVIVGDGTLGYEPLAPYDRIYTTAAGPKIP  160 (215)
T ss_dssp             -EEEESCGGGCCGGGCCEEEEEESSBBSSCC
T ss_pred             -EEEECCcccCCCCCCCeeEEEECCchHHHH
Confidence             112234433333378999999999999864

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.75  E-value=4.1e-05  Score=71.63  Aligned_cols=129  Identities=11%  Similarity=0.047  Sum_probs=70.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.+        ++       |..+|+..|+-..-....-+++.....       ..-..++-
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~--------~~-------~~~~v~gvDi~~~~~~~a~~n~~~~~~-------~~l~~~v~   93 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAA--------RL-------EKAEVTLYERSQEMAEFARRSLELPDN-------AAFSARIE   93 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHH--------HC-------TTEEEEEEESSHHHHHHHHHHTTSGGG-------TTTGGGEE
T ss_pred             CCCEEEEeCChHhHHHHHHHH--------hC-------CCCeEEEEECCHHHHHHHHHHHHhhhh-------CCCcceEE
Confidence            457999999999999887763        22       457899999855444444444432000       00001121


Q ss_pred             eccccCccccc-------cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHH-HHHHHH
Q 016644          145 AAGVPGSFYRR-------LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQ-FQTDLA  216 (385)
Q Consensus       145 ~~~vpgSFy~r-------LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q-~~~D~~  216 (385)
                        .+-+++.+-       .++++++|+|+|+--+++...   ..                  +++..++.+.. ...++.
T Consensus        94 --~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~---~~------------------~~~~~~~~a~~~~~~~~~  150 (260)
T 2ozv_A           94 --VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGD---RR------------------TPDALKAEAHAMTEGLFE  150 (260)
T ss_dssp             --EEECCTTCCHHHHHHTTCCTTCEEEEEECCCC------------------------------------------CCHH
T ss_pred             --EEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCC---CC------------------CcCHHHHHHhhcCcCCHH
Confidence              122354332       367899999999855555421   00                  11111111111 122477


Q ss_pred             HHHHHHHhhhccCCeEEEEecc
Q 016644          217 AFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       217 ~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                      .||+.-++-|+|||+|++....
T Consensus       151 ~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          151 DWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             HHHHHHHHHEEEEEEEEEEECG
T ss_pred             HHHHHHHHHcCCCCEEEEEEcH
Confidence            8899999999999999987643

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.75  E-value=5.4e-05  Score=66.12  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=62.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..|+.+...                 ..+|+.-|+-.......-+.+..           ....++ 
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~-----------------~~~v~~vD~s~~~l~~a~~~~~~-----------~~~~~v~   73 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL-----------------SKKVYAFDVQEQALGKTSQRLSD-----------LGIENTE   73 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT-----------------SSEEEEEESCHHHHHHHHHHHHH-----------HTCCCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh-----------------CCEEEEEECCHHHHHHHHHHHHH-----------cCCCcEE
Confidence            3478999999999999887621                 25788888854443333322210           001122 


Q ss_pred             eeccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       144 f~~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      |..   +++ ..+  ++++++|+++++  ++|+......+..                           ...+...+|+.
T Consensus        74 ~~~---~~~-~~l~~~~~~~fD~v~~~--~~~~~~~~~~~~~---------------------------~~~~~~~~l~~  120 (185)
T 3mti_A           74 LIL---DGH-ENLDHYVREPIRAAIFN--LGYLPSADKSVIT---------------------------KPHTTLEAIEK  120 (185)
T ss_dssp             EEE---SCG-GGGGGTCCSCEEEEEEE--EC--------------------------------------CHHHHHHHHHH
T ss_pred             EEe---CcH-HHHHhhccCCcCEEEEe--CCCCCCcchhccc---------------------------ChhhHHHHHHH
Confidence            222   332 232  568899999876  3554331111100                           01233455667


Q ss_pred             HHhhhccCCeEEEEecc
Q 016644          222 RSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g  238 (385)
                      -.+-|+|||+|++....
T Consensus       121 ~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A          121 ILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             HHHHEEEEEEEEEEEC-
T ss_pred             HHHhcCCCcEEEEEEeC
Confidence            78899999999988753

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.74  E-value=9.3e-05  Score=69.42  Aligned_cols=126  Identities=11%  Similarity=0.104  Sum_probs=73.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+....               |..+|+..|.-..-....-+....          . ...++ 
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~---------------~~~~v~~vD~s~~~l~~a~~n~~~----------~-~~~~v-  161 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASER---------------PDCEIIAVDRMPDAVSLAQRNAQH----------L-AIKNI-  161 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHC---------------TTSEEEEECSSHHHHHHHHHHHHH----------H-TCCSE-
T ss_pred             CCCEEEEecCCccHHHHHHHHhC---------------CCCEEEEEECCHHHHHHHHHHHHH----------c-CCCce-
Confidence            34689999999999988776322               457899999754333332222210          0 01122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhc----ccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALD----KRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~----~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                       ..+-+++.+ .+|++++|+|+|+-..+|... +....+    ....++..                ....-.++..+|.
T Consensus       162 -~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~-~~l~~~v~~~~p~~al~~----------------~~~g~~~~~~~l~  222 (276)
T 2b3t_A          162 -HILQSDWFS-ALAGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVA----------------ADSGMADIVHIIE  222 (276)
T ss_dssp             -EEECCSTTG-GGTTCCEEEEEECCCCBCTTC-HHHHSSGGGSSCSTTTBC----------------HHHHTHHHHHHHH
T ss_pred             -EEEEcchhh-hcccCCccEEEECCCCCCccc-cccChhhhhcCcHHHHcC----------------CCcHHHHHHHHHH
Confidence             123345544 356789999999988887655 211100    00000000                0111245677888


Q ss_pred             HHHhhhccCCeEEEEe
Q 016644          221 ARSKEMKRCGSMFLVC  236 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~  236 (385)
                      .-.+-|+|||++++..
T Consensus       223 ~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          223 QSRNALVSGGFLLLEH  238 (276)
T ss_dssp             HHGGGEEEEEEEEEEC
T ss_pred             HHHHhcCCCCEEEEEE
Confidence            8899999999999874

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.72  E-value=4.7e-05  Score=72.29  Aligned_cols=52  Identities=13%  Similarity=0.171  Sum_probs=30.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQL  123 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~  123 (385)
                      ++.+|+|+|||||..+..+.-    .+.+....   .....+|+-.|+-.+.-...-+.
T Consensus       105 ~~~rIld~GCgTGee~ysiAi----~L~e~~~~---~~~~~~I~atDis~~~L~~Ar~~  156 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAI----TLADALGM---APGRWKVFASDIDTEVLEKARSG  156 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHH----HHHHHHCS---CTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CCcEEEEeeccCChhHHHHHH----HHHHhccc---CCCCeEEEEEECCHHHHHHHHhc
Confidence            358999999999996533211    12232210   01147999999976555544443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.71  E-value=9.2e-05  Score=66.93  Aligned_cols=124  Identities=10%  Similarity=-0.029  Sum_probs=67.0

Q ss_pred             CceEEeeeCCC-CCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           65 IPFALADLGCS-CGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs-~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +..+|+|+||| +|..++.+....                ..+|+..|+-.......-+.+..           ...+--
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~----------------~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~v~  107 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF----------------NCKVTATEVDEEFFEYARRNIER-----------NNSNVR  107 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH----------------CCEEEEEECCHHHHHHHHHHHHH-----------TTCCCE
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc----------------CCEEEEEECCHHHHHHHHHHHHH-----------hCCCcE
Confidence            45799999999 999988775321                25788888854333333222211           001111


Q ss_pred             eeccccCcc--ccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSF--YRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       144 f~~~vpgSF--y~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      ++.   ++.  +.. +|++++|+|+++-.++|......  .+. ...+      ..+..          ...+...||..
T Consensus       108 ~~~---~d~~~~~~-~~~~~fD~I~~npp~~~~~~~~~--~~~-~~~~------~~~~~----------~~~~~~~~l~~  164 (230)
T 3evz_A          108 LVK---SNGGIIKG-VVEGTFDVIFSAPPYYDKPLGRV--LTE-REAI------GGGKY----------GEEFSVKLLEE  164 (230)
T ss_dssp             EEE---CSSCSSTT-TCCSCEEEEEECCCCC------------------------CCSS----------SCHHHHHHHHH
T ss_pred             EEe---CCchhhhh-cccCceeEEEECCCCcCCccccc--cCh-hhhh------ccCcc----------chHHHHHHHHH
Confidence            222   232  222 46799999999988888655211  000 0000      00000          01234567788


Q ss_pred             HHhhhccCCeEEEEecc
Q 016644          222 RSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g  238 (385)
                      -.+-|+|||+|++.+..
T Consensus       165 ~~~~LkpgG~l~~~~~~  181 (230)
T 3evz_A          165 AFDHLNPGGKVALYLPD  181 (230)
T ss_dssp             HGGGEEEEEEEEEEEES
T ss_pred             HHHHhCCCeEEEEEecc
Confidence            88999999999998654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.71  E-value=0.00011  Score=71.05  Aligned_cols=167  Identities=7%  Similarity=-0.003  Sum_probs=66.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHh--hhcC-cCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEEC--LASD-THR  141 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~--~~~~-~~~  141 (385)
                      +..+|+|+|||+|..++.+...+              .|..+|+.-|+-..-....-+.+..+.   ..+  .... ...
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~--------------g~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~ln~~~~~~~  167 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAV--------------GSQGRVISFEVRKDHHDLAKKNYKHWR---DSWKLSHVEEWPD  167 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEEESSHHHHHHHHHHHHHHH---HHHTTTCSSCCCC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHh--------------CCCceEEEEeCCHHHHHHHHHHHHHhh---cccccccccccCC
Confidence            34699999999999998886332              144678888874322222212111000   000  0000 001


Q ss_pred             ceeeccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          142 SYFAAGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       142 ~~f~~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      ++  ..+.+++.+.+  ++++++|+|++...-+|.                                           +|
T Consensus       168 ~v--~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~-------------------------------------------~l  202 (336)
T 2b25_A          168 NV--DFIHKDISGATEDIKSLTFDAVALDMLNPHV-------------------------------------------TL  202 (336)
T ss_dssp             CE--EEEESCTTCCC-------EEEEEECSSSTTT-------------------------------------------TH
T ss_pred             ce--EEEECChHHcccccCCCCeeEEEECCCCHHH-------------------------------------------HH
Confidence            22  12334544432  567899999985433221                                           22


Q ss_pred             HHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCC-c-----ccccccccccccccCCHHHHHH
Q 016644          220 GARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGL-I-----TGEKRDSFNIPVYASSLQEFKE  293 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~-i-----~~e~~d~f~~P~y~ps~~Ev~~  293 (385)
                      ..-.+-|+|||+|++.....                +.+...+..|...+. +     .+.....+..-...+...++.+
T Consensus       203 ~~~~~~LkpgG~lv~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~g~y~~  266 (336)
T 2b25_A          203 PVFYPHLKHGGVCAVYVVNI----------------TQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQ  266 (336)
T ss_dssp             HHHGGGEEEEEEEEEEESSH----------------HHHHHHHHHHHHHTCCEEEEEEECCCCCCEEECC----------
T ss_pred             HHHHHhcCCCcEEEEEeCCH----------------HHHHHHHHHHHhcCCCcccceEEEecccceEEEeecccccchhh
Confidence            44578999999999776533                224444454443221 1     1122222222222233348999


Q ss_pred             HHHhcCceEecEEEEEe
Q 016644          294 VVEANGSFVINKLEVFK  310 (385)
Q Consensus       294 ~le~~gsF~i~~le~~~  310 (385)
                      .+++.| |++.+++...
T Consensus       267 ~l~~aG-F~~v~~~~~~  282 (336)
T 2b25_A          267 KVESKI-NTDVQLDSQE  282 (336)
T ss_dssp             -----------------
T ss_pred             hhcccc-cccccccccc
Confidence            999999 9877766543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.69  E-value=1e-05  Score=75.10  Aligned_cols=65  Identities=15%  Similarity=0.163  Sum_probs=44.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644           28 ASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA  107 (385)
Q Consensus        28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv  107 (385)
                      ..|......|.+....++..|+    .+..      .+..+|+|+|||+|..|..+...+              .|.-+|
T Consensus        49 ~~yr~w~~~~skla~~ll~~l~----~~~l------~~g~~VLDlG~GtG~~t~~la~~v--------------~~~G~V  104 (232)
T 3id6_C           49 VEYREWNAFRSKLAGAILKGLK----TNPI------RKGTKVLYLGAASGTTISHVSDII--------------ELNGKA  104 (232)
T ss_dssp             EEEEECCTTTCHHHHHHHTTCS----CCSC------CTTCEEEEETCTTSHHHHHHHHHH--------------TTTSEE
T ss_pred             cchhhhchHHHHHHHHHHhhhh----hcCC------CCCCEEEEEeecCCHHHHHHHHHh--------------CCCCEE
Confidence            3488888888887766655442    1211      234899999999999888876433              145688


Q ss_pred             EecCCCCCc
Q 016644          108 FFSDLPSND  116 (385)
Q Consensus       108 ~~nDLp~ND  116 (385)
                      +--|+-...
T Consensus       105 ~avD~s~~~  113 (232)
T 3id6_C          105 YGVEFSPRV  113 (232)
T ss_dssp             EEEECCHHH
T ss_pred             EEEECcHHH
Confidence            988985543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.68  E-value=3.6e-05  Score=77.24  Aligned_cols=113  Identities=15%  Similarity=0.087  Sum_probs=61.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...        .       +.-+++--|+-.+.....-+.+..+...... . +-...++ 
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~--------~-------g~~kVvGIDiS~~~lelAr~n~e~frkr~~~-~-Gl~~~rV-  234 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAA--------T-------NCKHHYGVEKADIPAKYAETMDREFRKWMKW-Y-GKKHAEY-  234 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHH--------C-------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHH-H-TBCCCEE-
T ss_pred             CCCEEEEeCCCCCHHHHHHHHH--------C-------CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHH-h-CCCCCCe-
Confidence            4578999999999998877521        1       3235888887543222111111000000000 0 0001122 


Q ss_pred             eccccCccccccCCC--CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPT--RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~--~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                       ..+-|+|.+--+++  .++|+|+++..++|    |.                                   ...-|...
T Consensus       235 -efi~GD~~~lp~~d~~~~aDVVf~Nn~~F~----pd-----------------------------------l~~aL~Ei  274 (438)
T 3uwp_A          235 -TLERGDFLSEEWRERIANTSVIFVNNFAFG----PE-----------------------------------VDHQLKER  274 (438)
T ss_dssp             -EEEECCTTSHHHHHHHHTCSEEEECCTTCC----HH-----------------------------------HHHHHHHH
T ss_pred             -EEEECcccCCccccccCCccEEEEcccccC----ch-----------------------------------HHHHHHHH
Confidence             12334766543443  47999999888765    21                                   12223446


Q ss_pred             HhhhccCCeEEEE
Q 016644          223 SKEMKRCGSMFLV  235 (385)
Q Consensus       223 a~EL~pGG~lvl~  235 (385)
                      .+.|+|||+||++
T Consensus       275 ~RvLKPGGrIVss  287 (438)
T 3uwp_A          275 FANMKEGGRIVSS  287 (438)
T ss_dssp             HTTSCTTCEEEES
T ss_pred             HHcCCCCcEEEEe
Confidence            7899999999887

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.67  E-value=0.00012  Score=71.03  Aligned_cols=114  Identities=11%  Similarity=0.100  Sum_probs=71.3

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +++.+|+|+|||+|..+..+.        +++       |..++..-|+-..-....-+.++..           ...++
T Consensus        88 p~~~rVLdIG~G~G~la~~la--------~~~-------p~~~v~~VEidp~vi~~Ar~~~~~~-----------~~~rv  141 (317)
T 3gjy_A           88 ASKLRITHLGGGACTMARYFA--------DVY-------PQSRNTVVELDAELARLSREWFDIP-----------RAPRV  141 (317)
T ss_dssp             GGGCEEEEESCGGGHHHHHHH--------HHS-------TTCEEEEEESCHHHHHHHHHHSCCC-----------CTTTE
T ss_pred             CCCCEEEEEECCcCHHHHHHH--------HHC-------CCcEEEEEECCHHHHHHHHHhcccc-----------CCCce
Confidence            346799999999998887776        222       5678888888543333333334311           01122


Q ss_pred             -eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 -FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 -f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                       ++.+=...|..+ ++++++|+|++....+|-  .|..+..                                ..|++..
T Consensus       142 ~v~~~Da~~~l~~-~~~~~fDvIi~D~~~~~~--~~~~L~t--------------------------------~efl~~~  186 (317)
T 3gjy_A          142 KIRVDDARMVAES-FTPASRDVIIRDVFAGAI--TPQNFTT--------------------------------VEFFEHC  186 (317)
T ss_dssp             EEEESCHHHHHHT-CCTTCEEEEEECCSTTSC--CCGGGSB--------------------------------HHHHHHH
T ss_pred             EEEECcHHHHHhh-ccCCCCCEEEECCCCccc--cchhhhH--------------------------------HHHHHHH
Confidence             233322232222 467899999998877762  3433321                                3567778


Q ss_pred             HhhhccCCeEEEEecc
Q 016644          223 SKEMKRCGSMFLVCLG  238 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g  238 (385)
                      .+-|+|||+|++....
T Consensus       187 ~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          187 HRGLAPGGLYVANCGD  202 (317)
T ss_dssp             HHHEEEEEEEEEEEEE
T ss_pred             HHhcCCCcEEEEEecC
Confidence            8999999999988754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.67  E-value=6.8e-05  Score=72.10  Aligned_cols=83  Identities=10%  Similarity=0.003  Sum_probs=50.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCC-ceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPP-EFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p-~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +..+|+|+|||+|..++.+....               + ..+|+..|+-.......-+.+..           ....++
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~---------------~~~~~v~gvD~s~~~~~~a~~~~~~-----------~g~~~v  128 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVV---------------GEKGLVVSVEYSRKICEIAKRNVER-----------LGIENV  128 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH---------------CTTCEEEEEESCHHHHHHHHHHHHH-----------TTCCSE
T ss_pred             CcCEEEEecCCchHHHHHHHHhc---------------CCCCEEEEEECCHHHHHHHHHHHHH-----------cCCCCe
Confidence            34799999999999888776322               2 25688888754333332222210           001122


Q ss_pred             eeccccCccccccCCCCcccEEEccccccccc
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS  175 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS  175 (385)
                        ..+-+++.+-+.+.+++|+|+|...+|++.
T Consensus       129 --~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~  158 (317)
T 1dl5_A          129 --IFVCGDGYYGVPEFSPYDVIFVTVGVDEVP  158 (317)
T ss_dssp             --EEEESCGGGCCGGGCCEEEEEECSBBSCCC
T ss_pred             --EEEECChhhccccCCCeEEEEEcCCHHHHH
Confidence              122346444445578999999999999864

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.67  E-value=7.9e-05  Score=67.92  Aligned_cols=41  Identities=15%  Similarity=0.166  Sum_probs=28.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHH
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL  120 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~l  120 (385)
                      +..+|+|+|||+|..++.+...+               +..+|+.-|.-......+
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~---------------~~~~v~gvD~s~~~~~~a  114 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIA---------------DKGIVYAIEYAPRIMREL  114 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHT---------------TTSEEEEEESCHHHHHHH
T ss_pred             CCCEEEEEcccCCHHHHHHHHHc---------------CCcEEEEEECCHHHHHHH
Confidence            34789999999999988876322               335788888754433333

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.67  E-value=9.8e-05  Score=67.93  Aligned_cols=109  Identities=11%  Similarity=0.035  Sum_probs=60.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      .-.+|||+|||+|.++..+.+        .       .| -+++.-|+-......+-+....           ......+
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~--------~-------~~-~~v~~id~~~~~~~~a~~~~~~-----------~~~~~~~  112 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQE--------A-------PI-DEHWIIECNDGVFQRLRDWAPR-----------QTHKVIP  112 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTT--------S-------CE-EEEEEEECCHHHHHHHHHHGGG-----------CSSEEEE
T ss_pred             CCCeEEEECCCccHHHHHHHH--------h-------CC-cEEEEEeCCHHHHHHHHHHHhh-----------CCCceEE
Confidence            358999999999998876641        1       13 4677778754333332221110           0011112


Q ss_pred             eccccCccc--cccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFY--RRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy--~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +   -+...  ..-+|++++|.++.-.......  ...                               ..|...||+.-
T Consensus       113 ~---~~~a~~~~~~~~~~~FD~i~~D~~~~~~~--~~~-------------------------------~~~~~~~~~e~  156 (236)
T 3orh_A          113 L---KGLWEDVAPTLPDGHFDGILYDTYPLSEE--TWH-------------------------------THQFNFIKNHA  156 (236)
T ss_dssp             E---ESCHHHHGGGSCTTCEEEEEECCCCCBGG--GTT-------------------------------THHHHHHHHTH
T ss_pred             E---eehHHhhcccccccCCceEEEeeeecccc--hhh-------------------------------hcchhhhhhhh
Confidence            1   12322  2237899999986432211110  000                               12456677778


Q ss_pred             HhhhccCCeEEEEe
Q 016644          223 SKEMKRCGSMFLVC  236 (385)
Q Consensus       223 a~EL~pGG~lvl~~  236 (385)
                      ++-|||||+|++..
T Consensus       157 ~rvLkPGG~l~f~~  170 (236)
T 3orh_A          157 FRLLKPGGVLTYCN  170 (236)
T ss_dssp             HHHEEEEEEEEECC
T ss_pred             hheeCCCCEEEEEe
Confidence            99999999997654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.66  E-value=7e-05  Score=69.60  Aligned_cols=125  Identities=10%  Similarity=0.018  Sum_probs=67.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        +.       + .+|+..|+-.......-+++...          .-..++ 
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~--------~~-------~-~~v~gvDi~~~~~~~a~~n~~~~----------~~~~~v-  101 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLST--------RT-------K-AKIVGVEIQERLADMAKRSVAYN----------QLEDQI-  101 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHT--------TC-------C-CEEEEECCSHHHHHHHHHHHHHT----------TCTTTE-
T ss_pred             CCCEEEEcCCchhHHHHHHHH--------hc-------C-CcEEEEECCHHHHHHHHHHHHHC----------CCcccE-
Confidence            357999999999998887752        11       3 38899998554444333322110          000112 


Q ss_pred             eccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHH-HHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAY-KKQFQTDLAAFLGA  221 (385)
Q Consensus       145 ~~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay-~~q~~~D~~~FL~~  221 (385)
                       ..+-+++.+-.  ++++++|+|+|+-.++......  +                 .++....+. ......++..||..
T Consensus       102 -~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~--~-----------------~~~~~~~~~a~~~~~~~~~~~l~~  161 (259)
T 3lpm_A          102 -EIIEYDLKKITDLIPKERADIVTCNPPYFATPDTS--L-----------------KNTNEHFRIARHEVMCTLEDTIRV  161 (259)
T ss_dssp             -EEECSCGGGGGGTSCTTCEEEEEECCCC------------------------------------------HHHHHHHHH
T ss_pred             -EEEECcHHHhhhhhccCCccEEEECCCCCCCcccc--C-----------------CCCchHHHhhhccccCCHHHHHHH
Confidence             12233544322  6789999999975554431100  0                 000000000 11123577889999


Q ss_pred             HHhhhccCCeEEEEe
Q 016644          222 RSKEMKRCGSMFLVC  236 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~  236 (385)
                      -++-|+|||+|++..
T Consensus       162 ~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          162 AASLLKQGGKANFVH  176 (259)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHHHccCCcEEEEEE
Confidence            999999999999965

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.65  E-value=7e-05  Score=66.50  Aligned_cols=100  Identities=14%  Similarity=0.018  Sum_probs=62.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+...        +       |..+++..|........+-+.+..           ....++  
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~--------~-------~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~v--  117 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIV--------R-------PEAHFTLLDSLGKRVRFLRQVQHE-----------LKLENI--  117 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHH--------C-------TTSEEEEEESCHHHHHHHHHHHHH-----------TTCSSE--
T ss_pred             CCeEEEECCCCCHHHHHHHHH--------C-------CCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCe--
Confidence            468999999999999887632        2       457889999754333333222210           001122  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+.+++. .+.|++++|+++|...    .                                      ++..+|..-.+-
T Consensus       118 ~~~~~d~~-~~~~~~~~D~i~~~~~----~--------------------------------------~~~~~l~~~~~~  154 (207)
T 1jsx_A          118 EPVQSRVE-EFPSEPPFDGVISRAF----A--------------------------------------SLNDMVSWCHHL  154 (207)
T ss_dssp             EEEECCTT-TSCCCSCEEEEECSCS----S--------------------------------------SHHHHHHHHTTS
T ss_pred             EEEecchh-hCCccCCcCEEEEecc----C--------------------------------------CHHHHHHHHHHh
Confidence            12333543 3446789999998421    0                                      133556677889


Q ss_pred             hccCCeEEEEe
Q 016644          226 MKRCGSMFLVC  236 (385)
Q Consensus       226 L~pGG~lvl~~  236 (385)
                      |+|||++++..
T Consensus       155 L~~gG~l~~~~  165 (207)
T 1jsx_A          155 PGEQGRFYALK  165 (207)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cCCCcEEEEEe
Confidence            99999998874

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.64  E-value=0.0001  Score=71.81  Aligned_cols=105  Identities=15%  Similarity=0.221  Sum_probs=61.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        .        +..+|+.-|+.. .....-+.+..          ..-..++ 
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~--------~--------g~~~v~gvD~s~-~~~~a~~~~~~----------~~~~~~i-  115 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAK--------A--------GAKKVLGVDQSE-ILYQAMDIIRL----------NKLEDTI-  115 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEEESST-HHHHHHHHHHH----------TTCTTTE-
T ss_pred             CCCEEEEeeccCcHHHHHHHH--------c--------CCCEEEEEChHH-HHHHHHHHHHH----------cCCCCcE-
Confidence            346899999999998876651        1        124788889752 32222221110          0000122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-++..+--+|++++|+++|....+-+...                                   .++..+|..+.+
T Consensus       116 -~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~-----------------------------------~~~~~~l~~~~~  159 (340)
T 2fyt_A          116 -TLIKGKIEEVHLPVEKVDVIISEWMGYFLLFE-----------------------------------SMLDSVLYAKNK  159 (340)
T ss_dssp             -EEEESCTTTSCCSCSCEEEEEECCCBTTBTTT-----------------------------------CHHHHHHHHHHH
T ss_pred             -EEEEeeHHHhcCCCCcEEEEEEcCchhhccCH-----------------------------------HHHHHHHHHHHh
Confidence             11233533333778999999997632211110                                   134566788899


Q ss_pred             hhccCCeEE
Q 016644          225 EMKRCGSMF  233 (385)
Q Consensus       225 EL~pGG~lv  233 (385)
                      -|+|||+++
T Consensus       160 ~LkpgG~li  168 (340)
T 2fyt_A          160 YLAKGGSVY  168 (340)
T ss_dssp             HEEEEEEEE
T ss_pred             hcCCCcEEE
Confidence            999999997

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.64  E-value=0.00033  Score=64.30  Aligned_cols=77  Identities=10%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...+              .|..+++..|+...-....-+.+..          ..-.+.+ 
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~~~~~~~~a~~~~~~----------~~~~~~v-  147 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIV--------------GPEGRVVSYEIREDFAKLAWENIKW----------AGFDDRV-  147 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEECSCHHHHHHHHHHHHH----------HTCTTTE-
T ss_pred             CCCEEEEecCCchHHHHHHHHHh--------------CCCeEEEEEecCHHHHHHHHHHHHH----------cCCCCce-
Confidence            45789999999999998887432              1457889999854333333222210          0001111 


Q ss_pred             eccccCccccccCCCCcccEEEcc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSA  168 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss  168 (385)
                       ..+-+++. ..+|++++|++++.
T Consensus       148 -~~~~~d~~-~~~~~~~~D~v~~~  169 (255)
T 3mb5_A          148 -TIKLKDIY-EGIEEENVDHVILD  169 (255)
T ss_dssp             -EEECSCGG-GCCCCCSEEEEEEC
T ss_pred             -EEEECchh-hccCCCCcCEEEEC
Confidence             12334655 45889999999983

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.64  E-value=8.1e-05  Score=67.97  Aligned_cols=101  Identities=12%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+....               + .+|+..|.-..-....-+.+..           ....++ 
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~---------------~-~~v~~vD~~~~~~~~a~~~~~~-----------~~~~~v-  142 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIV---------------K-TDVYTIERIPELVEFAKRNLER-----------AGVKNV-  142 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH---------------C-SCEEEEESCHHHHHHHHHHHHH-----------TTCCSE-
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHh---------------C-CEEEEEeCCHHHHHHHHHHHHH-----------cCCCCc-
Confidence            34689999999999998776322               3 5778888643322222222210           001122 


Q ss_pred             eccccCccccccCCCC-cccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTR-SIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~-Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                       ..+.+++.. -+|+. .+|+|+++.++|++.   ..                                         -.
T Consensus       143 -~~~~~d~~~-~~~~~~~fD~Ii~~~~~~~~~---~~-----------------------------------------~~  176 (235)
T 1jg1_A          143 -HVILGDGSK-GFPPKAPYDVIIVTAGAPKIP---EP-----------------------------------------LI  176 (235)
T ss_dssp             -EEEESCGGG-CCGGGCCEEEEEECSBBSSCC---HH-----------------------------------------HH
T ss_pred             -EEEECCccc-CCCCCCCccEEEECCcHHHHH---HH-----------------------------------------HH
Confidence             122335422 24544 499999999998753   22                                         24


Q ss_pred             hhhccCCeEEEEeccC
Q 016644          224 KEMKRCGSMFLVCLGR  239 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~  239 (385)
                      +-|+|||+|++.+...
T Consensus       177 ~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          177 EQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             HTEEEEEEEEEEECSS
T ss_pred             HhcCCCcEEEEEEecC
Confidence            6799999999998654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.63  E-value=0.00014  Score=72.82  Aligned_cols=99  Identities=13%  Similarity=0.102  Sum_probs=64.2

Q ss_pred             CceEEeeeCCC------CCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcC
Q 016644           65 IPFALADLGCS------CGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASD  138 (385)
Q Consensus        65 ~~~~IaDlGCs------~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~  138 (385)
                      ++.+|+|+|||      +|..|+.++...       +       |..+|+--|+-.+.   .+  ..             
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~-------f-------P~a~V~GVDiSp~m---~~--~~-------------  263 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSF-------F-------PRGQIYGLDIMDKS---HV--DE-------------  263 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHH-------C-------TTCEEEEEESSCCG---GG--CB-------------
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHh-------C-------CCCEEEEEECCHHH---hh--cC-------------
Confidence            56899999999      888888776322       2       56789999986653   11  00             


Q ss_pred             cCCceeeccccCccccccCC------CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHH
Q 016644          139 THRSYFAAGVPGSFYRRLFP------TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQ  212 (385)
Q Consensus       139 ~~~~~f~~~vpgSFy~rLfP------~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~  212 (385)
                       .+--|..+   +..+-=|+      ++++|+|+|..+ ||..                                     
T Consensus       264 -~rI~fv~G---Da~dlpf~~~l~~~d~sFDlVisdgs-H~~~-------------------------------------  301 (419)
T 3sso_A          264 -LRIRTIQG---DQNDAEFLDRIARRYGPFDIVIDDGS-HINA-------------------------------------  301 (419)
T ss_dssp             -TTEEEEEC---CTTCHHHHHHHHHHHCCEEEEEECSC-CCHH-------------------------------------
T ss_pred             -CCcEEEEe---cccccchhhhhhcccCCccEEEECCc-ccch-------------------------------------
Confidence             11123333   42221133      689999999865 5532                                     


Q ss_pred             HHHHHHHHHHHhhhccCCeEEEEecc
Q 016644          213 TDLAAFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       213 ~D~~~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                       |+..+|+.-.+-|||||++++.-+-
T Consensus       302 -d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          302 -HVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             -HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             -hHHHHHHHHHHhcCCCeEEEEEecc
Confidence             2334566678999999999998655

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.61  E-value=0.00015  Score=69.68  Aligned_cols=101  Identities=5%  Similarity=-0.107  Sum_probs=61.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|+.|..++...               +..+|+--|+-.......-+.+..          ..-.+--|
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~---------------~ga~V~gIDis~~~l~~Ar~~~~~----------~gl~~v~~  176 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHV---------------YGMRVNVVEIEPDIAELSRKVIEG----------LGVDGVNV  176 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHT---------------TCCEEEEEESSHHHHHHHHHHHHH----------HTCCSEEE
T ss_pred             CcCEEEEECCCccHHHHHHHHHc---------------cCCEEEEEECCHHHHHHHHHHHHh----------cCCCCeEE
Confidence            46899999999999887665321               356888888854332222222210          00011124


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +.+   +..+  +|++++|+|++...      +|                                   |...+|..-.+
T Consensus       177 v~g---Da~~--l~d~~FDvV~~~a~------~~-----------------------------------d~~~~l~el~r  210 (298)
T 3fpf_A          177 ITG---DETV--IDGLEFDVLMVAAL------AE-----------------------------------PKRRVFRNIHR  210 (298)
T ss_dssp             EES---CGGG--GGGCCCSEEEECTT------CS-----------------------------------CHHHHHHHHHH
T ss_pred             EEC---chhh--CCCCCcCEEEECCC------cc-----------------------------------CHHHHHHHHHH
Confidence            433   4333  47899999998654      12                                   12334566788


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+|||+|++..
T Consensus       211 ~LkPGG~Lvv~~  222 (298)
T 3fpf_A          211 YVDTETRIIYRT  222 (298)
T ss_dssp             HCCTTCEEEEEE
T ss_pred             HcCCCcEEEEEc
Confidence            999999999865

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.60  E-value=0.0002  Score=70.95  Aligned_cols=134  Identities=14%  Similarity=0.146  Sum_probs=71.2

Q ss_pred             chhHHhHHHHHHHHHHHH-HHHHHHHHH-hhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCce
Q 016644           28 ASYANNSQAQAIHAQSML-HLLRETLDN-IQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEF  105 (385)
Q Consensus        28 ~sY~~nS~~Q~~~~~~~~-~~l~~ai~~-~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~  105 (385)
                      .||+..+..+.=..+... ..-++||.+ ...  +    +--+|+|+|||+|.+|+...+        ..       . -
T Consensus        50 ~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~--~----~~k~VLDvG~GtGiLs~~Aa~--------aG-------A-~  107 (376)
T 4hc4_A           50 ECYSDVSVHEEMIADRVRTDAYRLGILRNWAA--L----RGKTVLDVGAGTGILSIFCAQ--------AG-------A-R  107 (376)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHH--H----TTCEEEEETCTTSHHHHHHHH--------TT-------C-S
T ss_pred             hhccCcHHHHHHhCCHHHHHHHHHHHHhCHHh--c----CCCEEEEeCCCccHHHHHHHH--------hC-------C-C
Confidence            478877655543332222 123445521 111  1    224799999999988876641        11       2 4


Q ss_pred             eEEecCCCCCchHHHHhcCCCCCCchhHhhhcCc-CCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhcc
Q 016644          106 SAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDT-HRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDK  184 (385)
Q Consensus       106 qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~-~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~  184 (385)
                      +|+--|.. +.....-+.+.           .+. ...+-  .+.|. .+.+-.+..+|+++|-+--+.|-.        
T Consensus       108 ~V~ave~s-~~~~~a~~~~~-----------~n~~~~~i~--~i~~~-~~~~~lpe~~DvivsE~~~~~l~~--------  164 (376)
T 4hc4_A          108 RVYAVEAS-AIWQQAREVVR-----------FNGLEDRVH--VLPGP-VETVELPEQVDAIVSEWMGYGLLH--------  164 (376)
T ss_dssp             EEEEEECS-TTHHHHHHHHH-----------HTTCTTTEE--EEESC-TTTCCCSSCEEEEECCCCBTTBTT--------
T ss_pred             EEEEEeCh-HHHHHHHHHHH-----------HcCCCceEE--EEeee-eeeecCCccccEEEeecccccccc--------
Confidence            78888853 33322221111           010 11221  23334 455645588999999432222211        


Q ss_pred             cccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEE
Q 016644          185 RSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMF  233 (385)
Q Consensus       185 ~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  233 (385)
                                                 +..+..+|.+|.+-|+|||+|+
T Consensus       165 ---------------------------e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          165 ---------------------------ESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             ---------------------------TCSHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------------------------cchhhhHHHHHHhhCCCCceEC
Confidence                                       0124566788999999999986

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.60  E-value=0.00062  Score=63.38  Aligned_cols=107  Identities=14%  Similarity=0.151  Sum_probs=63.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...+              .|..+|+.-|+-..-...+-+.+..       .. ..-..++ 
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~-------~~-g~~~~~v-  155 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAV--------------GPAGQVISYEQRADHAEHARRNVSG-------CY-GQPPDNW-  155 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEECSCHHHHHHHHHHHHH-------HH-TSCCTTE-
T ss_pred             CCCEEEEEcccccHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHH-------hc-CCCCCcE-
Confidence            34689999999999998876432              1456888888744333322222210       00 0000121 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-+++.+..++++++|++++...     + |.                                     .+|..-.+
T Consensus       156 -~~~~~d~~~~~~~~~~~D~v~~~~~-----~-~~-------------------------------------~~l~~~~~  191 (280)
T 1i9g_A          156 -RLVVSDLADSELPDGSVDRAVLDML-----A-PW-------------------------------------EVLDAVSR  191 (280)
T ss_dssp             -EEECSCGGGCCCCTTCEEEEEEESS-----C-GG-------------------------------------GGHHHHHH
T ss_pred             -EEEECchHhcCCCCCceeEEEECCc-----C-HH-------------------------------------HHHHHHHH
Confidence             1233466555578899999998321     1 11                                     12345678


Q ss_pred             hhccCCeEEEEecc
Q 016644          225 EMKRCGSMFLVCLG  238 (385)
Q Consensus       225 EL~pGG~lvl~~~g  238 (385)
                      -|+|||++++....
T Consensus       192 ~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          192 LLVAGGVLMVYVAT  205 (280)
T ss_dssp             HEEEEEEEEEEESS
T ss_pred             hCCCCCEEEEEeCC
Confidence            89999999998754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.59  E-value=9.8e-05  Score=70.81  Aligned_cols=114  Identities=13%  Similarity=-0.020  Sum_probs=64.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..+..+..        .       .+..+|+.-|+-..-....-+.++..       ......+++ 
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~a~~~~~~~-------~~~~~~~~v~  152 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLR--------H-------GTVEHCDLVDIDGEVMEQSKQHFPQI-------SRSLADPRAT  152 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHT--------C-------TTCCEEEEEESCHHHHHHHHHHCHHH-------HGGGGCTTEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHh--------C-------CCCCEEEEEECCHHHHHHHHHHhHHh-------hcccCCCcEE
Confidence            457999999999998877751        1       14468888898543333333333210       000001122 


Q ss_pred             eeccccCccccccC--CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLF--PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       144 f~~~vpgSFy~rLf--P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      ++   -++..+-+.  +++++|+|++....++..  +..+.                                -..||+.
T Consensus       153 ~~---~~D~~~~~~~~~~~~fDvIi~d~~~~~~~--~~~l~--------------------------------~~~~l~~  195 (304)
T 3bwc_A          153 VR---VGDGLAFVRQTPDNTYDVVIIDTTDPAGP--ASKLF--------------------------------GEAFYKD  195 (304)
T ss_dssp             EE---ESCHHHHHHSSCTTCEEEEEEECC-----------C--------------------------------CHHHHHH
T ss_pred             EE---ECcHHHHHHhccCCceeEEEECCCCcccc--chhhh--------------------------------HHHHHHH
Confidence            22   234433332  688999999987766521  11110                                0346677


Q ss_pred             HHhhhccCCeEEEEec
Q 016644          222 RSKEMKRCGSMFLVCL  237 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~  237 (385)
                      -.+-|+|||+|++...
T Consensus       196 ~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          196 VLRILKPDGICCNQGE  211 (304)
T ss_dssp             HHHHEEEEEEEEEEEC
T ss_pred             HHHhcCCCcEEEEecC
Confidence            7899999999998853

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.57  E-value=0.00028  Score=60.61  Aligned_cols=75  Identities=13%  Similarity=0.069  Sum_probs=46.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..                 +..+++..|.-.......-+.+..           ....++ 
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~-----------~~~~~~-   85 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK-----------------RCKFVYAIDYLDGAIEVTKQNLAK-----------FNIKNC-   85 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT-----------------TSSEEEEEECSHHHHHHHHHHHHH-----------TTCCSE-
T ss_pred             CCCEEEEeCCCCCHHHHHHHh-----------------cCCeEEEEeCCHHHHHHHHHHHHH-----------cCCCcE-
Confidence            346999999999999888762                 246888888754333333222210           001121 


Q ss_pred             eccccCccccccCCCCcccEEEcccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFS  170 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~a  170 (385)
                       ..+.+++.+ .+|++++|+++++..
T Consensus        86 -~~~~~d~~~-~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           86 -QIIKGRAED-VLDKLEFNKAFIGGT  109 (183)
T ss_dssp             -EEEESCHHH-HGGGCCCSEEEECSC
T ss_pred             -EEEECCccc-cccCCCCcEEEECCc
Confidence             123346555 567789999999877

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.57  E-value=1.3e-05  Score=73.17  Aligned_cols=85  Identities=12%  Similarity=0.003  Sum_probs=53.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+..        .         ..+|+..|+-......+-+.+...          .-..++  
T Consensus        79 ~~~vLD~gcG~G~~~~~la~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~--  129 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFAL--------T---------GMRVIAIDIDPVKIALARNNAEVY----------GIADKI--  129 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHT----------TCGGGE--
T ss_pred             CCEEEECccccCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHHc----------CCCcCe--
Confidence            47899999999999988862        1         257888888554444333322110          000122  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPES  180 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~  180 (385)
                      ..+-+++.+ +.+++++|+|+++..+||.......
T Consensus       130 ~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~  163 (241)
T 3gdh_A          130 EFICGDFLL-LASFLKADVVFLSPPWGGPDYATAE  163 (241)
T ss_dssp             EEEESCHHH-HGGGCCCSEEEECCCCSSGGGGGSS
T ss_pred             EEEECChHH-hcccCCCCEEEECCCcCCcchhhhH
Confidence            122235443 3478899999999999998765543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.56  E-value=0.00011  Score=67.50  Aligned_cols=101  Identities=14%  Similarity=0.056  Sum_probs=61.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        ..       |..+|+.-|.-......+-+....          . ...++ 
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~--------~~-------~~~~v~~vD~s~~~~~~a~~~~~~----------~-~~~~v-  122 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKI--------CF-------PHLHVTIVDSLNKRITFLEKLSEA----------L-QLENT-  122 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHH--------HC-------TTCEEEEEESCHHHHHHHHHHHHH----------H-TCSSE-
T ss_pred             CCCEEEEecCCCCHHHHHHHH--------hC-------CCCEEEEEeCCHHHHHHHHHHHHH----------c-CCCCE-
Confidence            357999999999999988752        11       457899999854333332222110          0 01122 


Q ss_pred             eccccCccccccCC---CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFP---TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       145 ~~~vpgSFy~rLfP---~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                       ..+-+++.+-.++   ++++|+|+|...    .                                      |+..+|..
T Consensus       123 -~~~~~d~~~~~~~~~~~~~fD~V~~~~~----~--------------------------------------~~~~~l~~  159 (240)
T 1xdz_A          123 -TFCHDRAETFGQRKDVRESYDIVTARAV----A--------------------------------------RLSVLSEL  159 (240)
T ss_dssp             -EEEESCHHHHTTCTTTTTCEEEEEEECC----S--------------------------------------CHHHHHHH
T ss_pred             -EEEeccHHHhcccccccCCccEEEEecc----C--------------------------------------CHHHHHHH
Confidence             1223354332232   689999998541    1                                      13456677


Q ss_pred             HHhhhccCCeEEEE
Q 016644          222 RSKEMKRCGSMFLV  235 (385)
Q Consensus       222 Ra~EL~pGG~lvl~  235 (385)
                      ..+-|+|||++++.
T Consensus       160 ~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          160 CLPLVKKNGLFVAL  173 (240)
T ss_dssp             HGGGEEEEEEEEEE
T ss_pred             HHHhcCCCCEEEEE
Confidence            78999999999876

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.55  E-value=0.0002  Score=64.26  Aligned_cols=103  Identities=9%  Similarity=-0.070  Sum_probs=60.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...                 ..+|+.-|+-......+-+.+..          ..-..++ 
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~-----------------~~~v~~vD~s~~~~~~a~~~~~~----------~g~~~~v-  106 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA-----------------GGRAITIEPRADRIENIQKNIDT----------YGLSPRM-  106 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-----------------TCEEEEEESCHHHHHHHHHHHHH----------TTCTTTE-
T ss_pred             CCCEEEEecCCCCHHHHHHHHc-----------------CCEEEEEeCCHHHHHHHHHHHHH----------cCCCCCE-
Confidence            3578999999999998877521                 25778888754333332222110          0001022 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-+++.+.+....++|++++..++     .+                                     . +|..-.+
T Consensus       107 -~~~~~d~~~~~~~~~~~D~v~~~~~~-----~~-------------------------------------~-~l~~~~~  142 (204)
T 3njr_A          107 -RAVQGTAPAALADLPLPEAVFIGGGG-----SQ-------------------------------------A-LYDRLWE  142 (204)
T ss_dssp             -EEEESCTTGGGTTSCCCSEEEECSCC-----CH-------------------------------------H-HHHHHHH
T ss_pred             -EEEeCchhhhcccCCCCCEEEECCcc-----cH-------------------------------------H-HHHHHHH
Confidence             12234555544445679999976543     11                                     1 3345677


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      -|+|||++++.....
T Consensus       143 ~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          143 WLAPGTRIVANAVTL  157 (204)
T ss_dssp             HSCTTCEEEEEECSH
T ss_pred             hcCCCcEEEEEecCc
Confidence            899999999887543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.53  E-value=0.00037  Score=67.38  Aligned_cols=104  Identities=15%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+.+        .        +..+|+.-|+. .....+-+.+..          ..-..++  
T Consensus        39 ~~~VLDiGcGtG~ls~~la~--------~--------g~~~v~~vD~s-~~~~~a~~~~~~----------~~~~~~i--   89 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAK--------H--------GAKHVIGVDMS-SIIEMAKELVEL----------NGFSDKI--   89 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHH--------T--------CCSEEEEEESS-THHHHHHHHHHH----------TTCTTTE--
T ss_pred             CCEEEEecCccHHHHHHHHH--------C--------CCCEEEEEChH-HHHHHHHHHHHH----------cCCCCCE--
Confidence            46899999999998876641        1        22478999985 322222222210          0001112  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+.++..+--+|++++|+++|....+.+....                                   ++..+|..+.+-
T Consensus        90 ~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~-----------------------------------~~~~~l~~~~~~  134 (328)
T 1g6q_1           90 TLLRGKLEDVHLPFPKVDIIISEWMGYFLLYES-----------------------------------MMDTVLYARDHY  134 (328)
T ss_dssp             EEEESCTTTSCCSSSCEEEEEECCCBTTBSTTC-----------------------------------CHHHHHHHHHHH
T ss_pred             EEEECchhhccCCCCcccEEEEeCchhhcccHH-----------------------------------HHHHHHHHHHhh
Confidence            112334333236779999999985544332211                                   134566778899


Q ss_pred             hccCCeEE
Q 016644          226 MKRCGSMF  233 (385)
Q Consensus       226 L~pGG~lv  233 (385)
                      |+|||+|+
T Consensus       135 LkpgG~li  142 (328)
T 1g6q_1          135 LVEGGLIF  142 (328)
T ss_dssp             EEEEEEEE
T ss_pred             cCCCeEEE
Confidence            99999997

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.52  E-value=6.9e-05  Score=75.71  Aligned_cols=36  Identities=17%  Similarity=0.097  Sum_probs=26.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN  115 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N  115 (385)
                      +..+|+|+|||+|..++.+....               +..+|+--|+...
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~---------------g~~~V~GVDis~~  277 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALEC---------------GCALSFGCEIMDD  277 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH---------------CCSEEEEEECCHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHC---------------CCCEEEEEeCCHH
Confidence            45799999999999998886332               3347888887543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.51  E-value=0.00028  Score=62.96  Aligned_cols=26  Identities=8%  Similarity=0.073  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhhhccCCeEEEEeccC
Q 016644          214 DLAAFLGARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       214 D~~~FL~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .....|..-.+-|+|||+|++..+..
T Consensus       117 l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A          117 IGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHccCCCEEEEEEcCC
Confidence            34566777789999999999877643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.48  E-value=7.6e-05  Score=66.81  Aligned_cols=78  Identities=15%  Similarity=0.016  Sum_probs=45.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcC--Cce
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTH--RSY  143 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~--~~~  143 (385)
                      ..+|+|+|||+|..++.++.        +.       . -+|+..|+-......+-+.+..           ...  .++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~--------~~-------~-~~v~gvD~s~~~l~~a~~~~~~-----------~~~~~~~v  106 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALS--------RQ-------A-KKVTFLELDKTVANQLKKNLQT-----------LKCSSEQA  106 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHH--------TT-------C-SEEEEECSCHHHHHHHHHHHHH-----------TTCCTTTE
T ss_pred             CCeEEEcCCccCHHHHHHHH--------cc-------C-CEEEEEECCHHHHHHHHHHHHH-----------hCCCccce
Confidence            36899999999999987652        11       1 4788999865444444333221           001  121


Q ss_pred             eeccccCcccccc--CCCCc-ccEEEcccccc
Q 016644          144 FAAGVPGSFYRRL--FPTRS-IDFFHSAFSLH  172 (385)
Q Consensus       144 f~~~vpgSFy~rL--fP~~S-vd~~~Ss~alH  172 (385)
                        ..+-+++.+-+  +++++ +|+|+++..+|
T Consensus       107 --~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~  136 (201)
T 2ift_A          107 --EVINQSSLDFLKQPQNQPHFDVVFLDPPFH  136 (201)
T ss_dssp             --EEECSCHHHHTTSCCSSCCEEEEEECCCSS
T ss_pred             --EEEECCHHHHHHhhccCCCCCEEEECCCCC
Confidence              12233544333  24678 99999977655

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.48  E-value=0.0001  Score=66.64  Aligned_cols=111  Identities=13%  Similarity=0.032  Sum_probs=64.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..+..+....        ..  ...|..+|+.-|.-..-....-+.+...     . ...-...++ 
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~--------~~--~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~-~~~~~~~~v~  143 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKM--------NV--LENKNSYVIGLERVKDLVNFSLENIKRD-----K-PELLKIDNFK  143 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHT--------TT--TTCTTCEEEEEESCHHHHHHHHHHHHHH-----C-GGGGSSTTEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHh--------cc--cCCCCCEEEEEeCCHHHHHHHHHHHHHc-----C-ccccccCCEE
Confidence            34799999999999888775321        00  0114468888887443333222222100     0 000001121 


Q ss_pred             eeccccCcccccc----CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL----FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       144 f~~~vpgSFy~rL----fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      |.   -++..+-+    ++.+++|+|++..++|++   +..                                       
T Consensus       144 ~~---~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~---~~~---------------------------------------  178 (227)
T 2pbf_A          144 II---HKNIYQVNEEEKKELGLFDAIHVGASASEL---PEI---------------------------------------  178 (227)
T ss_dssp             EE---ECCGGGCCHHHHHHHCCEEEEEECSBBSSC---CHH---------------------------------------
T ss_pred             EE---ECChHhcccccCccCCCcCEEEECCchHHH---HHH---------------------------------------
Confidence            22   23544433    556889999999999874   322                                       


Q ss_pred             HHHHhhhccCCeEEEEecc
Q 016644          220 GARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g  238 (385)
                        -.+-|+|||+|++.+..
T Consensus       179 --~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          179 --LVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             --HHHHEEEEEEEEEEEEE
T ss_pred             --HHHhcCCCcEEEEEEcc
Confidence              25789999999999864

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.47  E-value=0.00027  Score=65.11  Aligned_cols=169  Identities=10%  Similarity=0.004  Sum_probs=80.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..++.+....               |..+|+.-|+-.......-+.+...          .-..++ 
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~---------------~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~v~  119 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL---------------NGWYFLATEVDDMCFNYAKKNVEQN----------NLSDLIK  119 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH---------------HCCEEEEEESCHHHHHHHHHHHHHT----------TCTTTEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC---------------CCCeEEEEECCHHHHHHHHHHHHHc----------CCCccEE
Confidence            35689999999999998876432               3468899998544444333322110          001112 


Q ss_pred             eeccccCc-cccccCC---CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGS-FYRRLFP---TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       144 f~~~vpgS-Fy~rLfP---~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      |..+--.+ +.+ -++   ++++|+|+|+-.+|+.......+..                 +.+..      ..+...++
T Consensus       120 ~~~~d~~~~~~~-~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~-----------------~~~~~------~~~~~~l~  175 (254)
T 2h00_A          120 VVKVPQKTLLMD-ALKEESEIIYDFCMCNPPFFANQLEAKGVNS-----------------RNPRR------PPPSSVNT  175 (254)
T ss_dssp             EEECCTTCSSTT-TSTTCCSCCBSEEEECCCCC-----------------------------------------------
T ss_pred             EEEcchhhhhhh-hhhcccCCcccEEEECCCCccCcchhccccc-----------------ccccc------cCCHHHHh
Confidence            22221111 222 234   3689999999777765411111100                 00000      01223344


Q ss_pred             HHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcC
Q 016644          220 GARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG  299 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~g  299 (385)
                      ..-++-|+|||.+++.-                   ..+..+..-+...|.+..       ..-..++.+++.+.+++.|
T Consensus       176 ~~~~~~LkpgG~l~~~~-------------------~~~~~~~~~l~~~g~~~~-------~~~~~~~~~~~~~~l~~~G  229 (254)
T 2h00_A          176 GGITEIMAEGGELEFVK-------------------RIIHDSLQLKKRLRWYSC-------MLGKKCSLAPLKEELRIQG  229 (254)
T ss_dssp             -CTTTTHHHHTHHHHHH-------------------HHHHHHHHHGGGBSCEEE-------EESSTTSHHHHHHHHHHTT
T ss_pred             hhHHHHEecCCEEEEEH-------------------HHHHHHHhcccceEEEEE-------CCCChhHHHHHHHHHHHcC
Confidence            55678999999984331                   123333222222332211       0112345689999999999


Q ss_pred             ceEecEEEEE
Q 016644          300 SFVINKLEVF  309 (385)
Q Consensus       300 sF~i~~le~~  309 (385)
                       |+..+...+
T Consensus       230 -f~~v~~~~~  238 (254)
T 2h00_A          230 -VPKVTYTEF  238 (254)
T ss_dssp             -CSEEEEEEE
T ss_pred             -CCceEEEEE
Confidence             865444443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.45  E-value=0.00025  Score=64.38  Aligned_cols=104  Identities=10%  Similarity=0.124  Sum_probs=61.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+....               |..+|+..|.-..-....-+.+...          .-..++  
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~---------------~~~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~v--  107 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQAL---------------PEATIVSIERDERRYEEAHKHVKAL----------GLESRI--  107 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHC---------------TTCEEEEECCCHHHHHHHHHHHHHT----------TCTTTE--
T ss_pred             CCEEEEecCCCcHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHHc----------CCCCcE--
Confidence            4689999999999988776322               3578888888543333222222100          000112  


Q ss_pred             ccccCcccccc---CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYRRL---FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       146 ~~vpgSFy~rL---fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      ..+-+++.+-+   ..++++|+|++....+                                         ++..+|..-
T Consensus       108 ~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-----------------------------------------~~~~~l~~~  146 (233)
T 2gpy_A          108 ELLFGDALQLGEKLELYPLFDVLFIDAAKG-----------------------------------------QYRRFFDMY  146 (233)
T ss_dssp             EEECSCGGGSHHHHTTSCCEEEEEEEGGGS-----------------------------------------CHHHHHHHH
T ss_pred             EEEECCHHHHHHhcccCCCccEEEECCCHH-----------------------------------------HHHHHHHHH
Confidence            11223443322   1267899999865432                                         133455667


Q ss_pred             HhhhccCCeEEEEec
Q 016644          223 SKEMKRCGSMFLVCL  237 (385)
Q Consensus       223 a~EL~pGG~lvl~~~  237 (385)
                      .+-|+|||++++...
T Consensus       147 ~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          147 SPMVRPGGLILSDNV  161 (233)
T ss_dssp             GGGEEEEEEEEEETT
T ss_pred             HHHcCCCeEEEEEcC
Confidence            889999999999753

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.44  E-value=0.00022  Score=66.92  Aligned_cols=76  Identities=9%  Similarity=0.111  Sum_probs=45.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...+       .       |..+|+.-|+-......+-+.+....          ...++ 
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~-------~-------~~~~v~~vD~s~~~~~~a~~~~~~~~----------g~~~v-  164 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYAL-------N-------GKGTLTVVERDEDNLKKAMDNLSEFY----------DIGNV-  164 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH-------T-------TSSEEEEECSCHHHHHHHHHHHHTTS----------CCTTE-
T ss_pred             CcCEEEEecCCCCHHHHHHHHHc-------C-------CCCEEEEEECCHHHHHHHHHHHHhcC----------CCCcE-
Confidence            34799999999999998776432       1       45788999985433332222221100          01122 


Q ss_pred             eccccCccccccCCCCcccEEEc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHS  167 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~S  167 (385)
                       ..+-+++.+ .+|++++|++++
T Consensus       165 -~~~~~d~~~-~~~~~~fD~Vi~  185 (275)
T 1yb2_A          165 -RTSRSDIAD-FISDQMYDAVIA  185 (275)
T ss_dssp             -EEECSCTTT-CCCSCCEEEEEE
T ss_pred             -EEEECchhc-cCcCCCccEEEE
Confidence             112345544 677889999998

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.44  E-value=0.0002  Score=62.01  Aligned_cols=103  Identities=17%  Similarity=0.092  Sum_probs=60.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...                - .+++..|.-......+-+.+..          .....++ 
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~----------------~-~~v~~~D~~~~~~~~a~~~~~~----------~~~~~~~-   84 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGR----------------V-RRVYAIDRNPEAISTTEMNLQR----------HGLGDNV-   84 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTT----------------S-SEEEEEESCHHHHHHHHHHHHH----------TTCCTTE-
T ss_pred             CCCEEEEECCCCCHHHHHHHHh----------------c-CEEEEEECCHHHHHHHHHHHHH----------cCCCcce-
Confidence            4579999999999988877521                1 4677778743322222221110          0000121 


Q ss_pred             eccccCccccccCCC-CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPT-RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~-~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                       ..+.+++.+ .+|. +++|+++++..+|++                                         ..+|..-.
T Consensus        85 -~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~-----------------------------------------~~~l~~~~  121 (192)
T 1l3i_A           85 -TLMEGDAPE-ALCKIPDIDIAVVGGSGGEL-----------------------------------------QEILRIIK  121 (192)
T ss_dssp             -EEEESCHHH-HHTTSCCEEEEEESCCTTCH-----------------------------------------HHHHHHHH
T ss_pred             -EEEecCHHH-hcccCCCCCEEEECCchHHH-----------------------------------------HHHHHHHH
Confidence             112234444 3344 689999988765432                                         23456668


Q ss_pred             hhhccCCeEEEEecc
Q 016644          224 KEMKRCGSMFLVCLG  238 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g  238 (385)
                      +-|+|||++++....
T Consensus       122 ~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A          122 DKLKPGGRIIVTAIL  136 (192)
T ss_dssp             HTEEEEEEEEEEECB
T ss_pred             HhcCCCcEEEEEecC
Confidence            889999999987754

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.44  E-value=0.00037  Score=64.15  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=26.9

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      +.+|+|+|||+|..|+.+.+.+    +...       |..+|+--|+-.
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~----~~~~-------~~~~V~gvD~s~  119 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLT----KIMG-------IDCQVIGIDRDL  119 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHH----HHTT-------CCCEEEEEESCC
T ss_pred             CCEEEEEeCCCCHHHHHHHHhh----hhcC-------CCCEEEEEeCCh
Confidence            4689999999999999876432    1111       457888888754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.42  E-value=0.00013  Score=65.43  Aligned_cols=77  Identities=12%  Similarity=0.016  Sum_probs=45.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      ..+|+|+|||+|..++.++.        +.       . -+|+..|+-......+-+.+..           ....++ |
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~--------~~-------~-~~V~~vD~s~~~l~~a~~~~~~-----------~~~~~v~~  107 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALS--------RY-------A-AGATLIEMDRAVSQQLIKNLAT-----------LKAGNARV  107 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHH--------TT-------C-SEEEEECSCHHHHHHHHHHHHH-----------TTCCSEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHh--------cC-------C-CEEEEEECCHHHHHHHHHHHHH-----------cCCCcEEE
Confidence            36899999999999987652        11       1 3788889855444443333211           001121 2


Q ss_pred             eccccCcccccc-CCCCcccEEEcccccc
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLH  172 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alH  172 (385)
                      +   -++..+-+ .+++++|+|++...+|
T Consensus       108 ~---~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A          108 V---NSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             E---CSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             E---ECCHHHHHhhcCCCCCEEEECCCCC
Confidence            2   23544323 3567999999876665

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.41  E-value=5.3e-05  Score=68.56  Aligned_cols=40  Identities=15%  Similarity=0.352  Sum_probs=28.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchH
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFN  118 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn  118 (385)
                      ++.+|+|+|||+|..|+.+...+              ++..+|+.-|+-.....
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~~   97 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLL--------------QPGARLLTMEINPDCAA   97 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC--------------CCCCEEEEEeCChHHHH
Confidence            35789999999999999886321              13578888898543333

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.40  E-value=0.0005  Score=64.34  Aligned_cols=77  Identities=9%  Similarity=-0.029  Sum_probs=45.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.+.+       .       |..+|+..|+-..-...+-+.+...          .-..++ 
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~-------~-------~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~v-  166 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAV-------G-------SSGKVFAYEKREEFAKLAESNLTKW----------GLIERV-  166 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHT-------T-------TTCEEEEECCCHHHHHHHHHHHHHT----------TCGGGE-
T ss_pred             CCCEEEEECCcCCHHHHHHHHHh-------C-------CCcEEEEEECCHHHHHHHHHHHHHc----------CCCCCE-
Confidence            34689999999999988876332       1       4578899997543333322222100          000111 


Q ss_pred             eccccCccccccCCCCcccEEEcc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSA  168 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss  168 (385)
                       ..+.+++.+. +|++++|++++.
T Consensus       167 -~~~~~d~~~~-~~~~~~D~V~~~  188 (277)
T 1o54_A          167 -TIKVRDISEG-FDEKDVDALFLD  188 (277)
T ss_dssp             -EEECCCGGGC-CSCCSEEEEEEC
T ss_pred             -EEEECCHHHc-ccCCccCEEEEC
Confidence             1233465443 788899999983

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.38  E-value=0.00016  Score=62.64  Aligned_cols=80  Identities=11%  Similarity=0.000  Sum_probs=45.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        .        +..+|+..|+-......+-+.+...          +-..++ 
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~--------~--------~~~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~~-   83 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVS--------R--------GMSAAVLVEKNRKAQAIIQDNIIMT----------KAENRF-   83 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHH--------T--------TCCEEEEECCCHHHHHHHHHHHHTT----------TCGGGE-
T ss_pred             CCCeEEEeCCCCCHHHHHHHH--------c--------CCCEEEEEECCHHHHHHHHHHHHHc----------CCCCce-
Confidence            356899999999999887651        1        2358899998543333332222110          000111 


Q ss_pred             eccccCcccccc-CCCCcccEEEcccccc
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLH  172 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alH  172 (385)
                       ..+.+++.+-+ ..++++|+++++..+|
T Consensus        84 -~~~~~d~~~~~~~~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           84 -TLLKMEAERAIDCLTGRFDLVFLDPPYA  111 (177)
T ss_dssp             -EEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred             -EEEECcHHHhHHhhcCCCCEEEECCCCC
Confidence             12234554432 3456799999875544

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.36  E-value=0.00055  Score=62.19  Aligned_cols=35  Identities=14%  Similarity=0.290  Sum_probs=26.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      ..+|+|+|||+|..+..+.+.+              .|..+|+.-|+..
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~--------------g~~~~v~gvD~s~  112 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIV--------------GPDGLVYAVEFSH  112 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEECCCH
T ss_pred             CCEEEEEcccCCHHHHHHHHHh--------------CCCcEEEEEECCH
Confidence            4689999999999998886432              1346788888854

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.35  E-value=0.0007  Score=73.14  Aligned_cols=116  Identities=11%  Similarity=0.039  Sum_probs=72.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..++.+..        ..      +|..+|+--|+-.......-+.+....     ..+.....++ 
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr--------~g------~p~a~VtGVDIS~emLe~AReRLa~~l-----nAkr~gl~nVe  781 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLD--------YP------TSLQTIIGVDISPKGLARAAKMLHVKL-----NKEACNVKSAT  781 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTS--------SC------CCCCEEEEEESCHHHHHHHHHHHHHHT-----TTTCSSCSEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHH--------hC------CCCCeEEEEECCHHHHHHHHHHhhhcc-----chhhcCCCceE
Confidence            357999999999999887751        11      133689999986544444333221000     0000011122 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |.   -|+..+--++++++|+|+++.++||+.+ |                                   +...||+.-.
T Consensus       782 fi---qGDa~dLp~~d~sFDlVV~~eVLeHL~d-p-----------------------------------~l~~~L~eI~  822 (950)
T 3htx_A          782 LY---DGSILEFDSRLHDVDIGTCLEVIEHMEE-D-----------------------------------QACEFGEKVL  822 (950)
T ss_dssp             EE---ESCTTSCCTTSCSCCEEEEESCGGGSCH-H-----------------------------------HHHHHHHHHH
T ss_pred             EE---ECchHhCCcccCCeeEEEEeCchhhCCh-H-----------------------------------HHHHHHHHHH
Confidence            33   3365444477899999999999999854 1                                   1234566678


Q ss_pred             hhhccCCeEEEEeccC
Q 016644          224 KEMKRCGSMFLVCLGR  239 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~  239 (385)
                      +-|+|| +++++.+.+
T Consensus       823 RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          823 SLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             HTTCCS-EEEEEECBG
T ss_pred             HHcCCC-EEEEEecCc
Confidence            999999 888887654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.34  E-value=0.00035  Score=64.01  Aligned_cols=77  Identities=8%  Similarity=-0.008  Sum_probs=44.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...+              .|..+++..|+-......+-+.+..       ..  . ..++ 
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~~~~~~~~a~~~~~~-------~~--g-~~~v-  150 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAV--------------GEKGLVESYEARPHHLAQAERNVRA-------FW--Q-VENV-  150 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEEESCHHHHHHHHHHHHH-------HC--C-CCCE-
T ss_pred             CCCEEEEECCCcCHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHH-------hc--C-CCCE-
Confidence            34799999999999998776432              1446888888744333333222210       00  0 1122 


Q ss_pred             eccccCccccccCCCCcccEEEc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHS  167 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~S  167 (385)
                       ..+.+++.+--+|++++|++++
T Consensus       151 -~~~~~d~~~~~~~~~~~D~v~~  172 (258)
T 2pwy_A          151 -RFHLGKLEEAELEEAAYDGVAL  172 (258)
T ss_dssp             -EEEESCGGGCCCCTTCEEEEEE
T ss_pred             -EEEECchhhcCCCCCCcCEEEE
Confidence             1223464433378899999997

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.34  E-value=8.1e-05  Score=63.61  Aligned_cols=106  Identities=11%  Similarity=-0.084  Sum_probs=60.3

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+..        ..       +.  |+..|+-......+-+.+..          . ..+--|.
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~--------~~-------~~--v~~vD~~~~~~~~a~~~~~~----------~-~~~~~~~   93 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAAS--------EG-------WE--AVLVEKDPEAVRLLKENVRR----------T-GLGARVV   93 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHH--------TT-------CE--EEEECCCHHHHHHHHHHHHH----------H-TCCCEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHH--------CC-------Ce--EEEEeCCHHHHHHHHHHHHH----------c-CCceEEE
Confidence            46899999999998887752        11       33  88888854333333222210          0 0011122


Q ss_pred             ccccCcccccc--CC--CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYRRL--FP--TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       146 ~~vpgSFy~rL--fP--~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                         -+++.+-+  ++  .+++|+++++..+|  ...+..+                                  ..+ ..
T Consensus        94 ---~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~----------------------------------~~~-~~  133 (171)
T 1ws6_A           94 ---ALPVEVFLPEAKAQGERFTVAFMAPPYA--MDLAALF----------------------------------GEL-LA  133 (171)
T ss_dssp             ---CSCHHHHHHHHHHTTCCEEEEEECCCTT--SCTTHHH----------------------------------HHH-HH
T ss_pred             ---eccHHHHHHhhhccCCceEEEEECCCCc--hhHHHHH----------------------------------HHH-Hh
Confidence               23443322  11  34899999998776  3222221                                  111 11


Q ss_pred             HHhhhccCCeEEEEeccCC
Q 016644          222 RSKEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g~~  240 (385)
                       .+-|+|||+++++.....
T Consensus       134 -~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          134 -SGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             -HTCEEEEEEEEEEEETTS
T ss_pred             -hcccCCCcEEEEEeCCcc
Confidence             578999999999887664

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.32  E-value=0.00021  Score=64.77  Aligned_cols=113  Identities=12%  Similarity=0.036  Sum_probs=63.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+....        ... ...+..+|+..|.-..-....-+.+...   .......  .+--+
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~--------~~~-~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~~~--~~v~~  149 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYI--------KAK-GVDADTRIVGIEHQAELVRRSKANLNTD---DRSMLDS--GQLLI  149 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH--------HHS-CCCTTCEEEEEESCHHHHHHHHHHHHHH---HHHHHHH--TSEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHhc--------ccc-cCCccCEEEEEEcCHHHHHHHHHHHHhc---CccccCC--CceEE
Confidence            34799999999999998876322        100 0012357888887443322222222100   0000000  01112


Q ss_pred             eccccCccccccCCC-CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPT-RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~-~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      .   -++... -+|+ +++|+|++..++||+   |..                                         -.
T Consensus       150 ~---~~d~~~-~~~~~~~fD~I~~~~~~~~~---~~~-----------------------------------------~~  181 (227)
T 1r18_A          150 V---EGDGRK-GYPPNAPYNAIHVGAAAPDT---PTE-----------------------------------------LI  181 (227)
T ss_dssp             E---ESCGGG-CCGGGCSEEEEEECSCBSSC---CHH-----------------------------------------HH
T ss_pred             E---ECCccc-CCCcCCCccEEEECCchHHH---HHH-----------------------------------------HH
Confidence            2   234444 3454 899999999999885   322                                         25


Q ss_pred             hhhccCCeEEEEeccC
Q 016644          224 KEMKRCGSMFLVCLGR  239 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~  239 (385)
                      +-|+|||+|++.+...
T Consensus       182 ~~LkpgG~lvi~~~~~  197 (227)
T 1r18_A          182 NQLASGGRLIVPVGPD  197 (227)
T ss_dssp             HTEEEEEEEEEEESCS
T ss_pred             HHhcCCCEEEEEEecC
Confidence            6799999999998653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.30  E-value=0.00026  Score=63.82  Aligned_cols=86  Identities=10%  Similarity=-0.057  Sum_probs=47.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..|..+....              .+..+|+..|+-......+-+.+....  . ....   ..++ 
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~--------------~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~~~---~~~v~  136 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMV--------------GCTGKVIGIDHIKELVDDSVNNVRKDD--P-TLLS---SGRVQ  136 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH--------------CTTCEEEEEESCHHHHHHHHHHHHHHC--T-HHHH---TSSEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHh--------------CCCcEEEEEeCCHHHHHHHHHHHHhhc--c-cccC---CCcEE
Confidence            35799999999999998776322              134688888875433333222221000  0 0000   0121 


Q ss_pred             eeccccCccccccCCCCcccEEEccccccc
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHW  173 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHW  173 (385)
                      +..   ++...-..+.+++|+|++...++.
T Consensus       137 ~~~---~d~~~~~~~~~~fD~i~~~~~~~~  163 (226)
T 1i1n_A          137 LVV---GDGRMGYAEEAPYDAIHVGAAAPV  163 (226)
T ss_dssp             EEE---SCGGGCCGGGCCEEEEEECSBBSS
T ss_pred             EEE---CCcccCcccCCCcCEEEECCchHH
Confidence            222   243333345778999999888754

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.30  E-value=0.00014  Score=67.39  Aligned_cols=39  Identities=10%  Similarity=0.221  Sum_probs=28.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCch
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDF  117 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDF  117 (385)
                      +..+|+|+|||+|..|+.+...+              ++..+|+.-|+-..-.
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~s~~~~  101 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMAREL--------------PADGQLLTLEADAHHA  101 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEECCHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHhC--------------CCCCEEEEEECCHHHH
Confidence            35799999999999998876321              1257899999854333

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.29  E-value=0.00031  Score=64.69  Aligned_cols=123  Identities=15%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhc-CcCCce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLAS-DTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~-~~~~~~  143 (385)
                      +..+|+|+|||+|..++.+...        .       |..+|+.-|.-......+-+.+...    ...... ....++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~--------~-------~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~nv  109 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPA--------F-------PEDLILGMEIRVQVTNYVEDRIIAL----RNNTASKHGFQNI  109 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHH--------S-------TTSEEEEEESCHHHHHHHHHHHHHH----HHTC-CCSTTTTE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--------C-------CCCCEEEEEcCHHHHHHHHHHHHHH----hhccccccCCCcE
Confidence            3578999999999999887632        2       5678888887543332222111100    000000 001122


Q ss_pred             -eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 -FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 -f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                       ++.+-...+....++.+++|.++....=-|....    .       .+.++.                   -..||..-
T Consensus       110 ~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~----~-------~~~r~~-------------------~~~~l~~~  159 (246)
T 2vdv_E          110 NVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQR----K-------HKARII-------------------TNTLLSEY  159 (246)
T ss_dssp             EEEECCTTSCGGGTSCTTCEEEEEEESCCCC-----------------CSSCC-------------------CHHHHHHH
T ss_pred             EEEeccHHHHHHHhccccccCEEEEECCCcccccc----h-------hHHhhc-------------------cHHHHHHH
Confidence             3333222334566889999999854322221110    0       000100                   02456667


Q ss_pred             HhhhccCCeEEEEe
Q 016644          223 SKEMKRCGSMFLVC  236 (385)
Q Consensus       223 a~EL~pGG~lvl~~  236 (385)
                      ++-|+|||+|++.+
T Consensus       160 ~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          160 AYVLKEGGVVYTIT  173 (246)
T ss_dssp             HHHEEEEEEEEEEE
T ss_pred             HHHcCCCCEEEEEe
Confidence            88999999999855

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.26  E-value=0.0002  Score=66.70  Aligned_cols=101  Identities=14%  Similarity=0.057  Sum_probs=61.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ...+|+|+|||+|..++.+...        +       |..+|+.-|.-......+-+....           ....++ 
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~--------~-------~~~~v~~vD~s~~~~~~a~~~~~~-----------~~l~~v-  132 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIV--------R-------PELELVLVDATRKKVAFVERAIEV-----------LGLKGA-  132 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHH--------C-------TTCEEEEEESCHHHHHHHHHHHHH-----------HTCSSE-
T ss_pred             CCCEEEEEcCCCCHHHHHHHHH--------C-------CCCEEEEEECCHHHHHHHHHHHHH-----------hCCCce-
Confidence            4579999999999999887521        2       568899999754333333222210           001122 


Q ss_pred             eccccCccccccC----CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLF----PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rLf----P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                       ..+.++. +.+.    +++++|+|+|...-                                          ++..++.
T Consensus       133 -~~~~~d~-~~~~~~~~~~~~fD~I~s~a~~------------------------------------------~~~~ll~  168 (249)
T 3g89_A          133 -RALWGRA-EVLAREAGHREAYARAVARAVA------------------------------------------PLCVLSE  168 (249)
T ss_dssp             -EEEECCH-HHHTTSTTTTTCEEEEEEESSC------------------------------------------CHHHHHH
T ss_pred             -EEEECcH-HHhhcccccCCCceEEEECCcC------------------------------------------CHHHHHH
Confidence             1223343 2332    25899999985321                                          1334556


Q ss_pred             HHHhhhccCCeEEEEe
Q 016644          221 ARSKEMKRCGSMFLVC  236 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~  236 (385)
                      ...+-|+|||+|++..
T Consensus       169 ~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          169 LLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             HHGGGEEEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEe
Confidence            6788999999998755

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.24  E-value=0.0003  Score=64.20  Aligned_cols=103  Identities=11%  Similarity=0.105  Sum_probs=61.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..|+.+...               .|..+|+.-|+-.......-+.+..          ..-..++ 
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~---------------~~~~~v~~vD~~~~~~~~a~~~~~~----------~~~~~~v~  125 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASI---------------SDDIHVTTIERNETMIQYAKQNLAT----------YHFENQVR  125 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTT---------------CTTCEEEEEECCHHHHHHHHHHHHH----------TTCTTTEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHh---------------CCCCEEEEEECCHHHHHHHHHHHHH----------cCCCCcEE
Confidence            3579999999999999887621               1457889999854333333222210          0001122 


Q ss_pred             eeccccCccccccCC---CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFP---TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       144 f~~~vpgSFy~rLfP---~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      |..   +++.+- .|   ++++|+|++..   |...                                      +..||.
T Consensus       126 ~~~---~d~~~~-~~~~~~~~fD~V~~~~---~~~~--------------------------------------~~~~l~  160 (232)
T 3ntv_A          126 IIE---GNALEQ-FENVNDKVYDMIFIDA---AKAQ--------------------------------------SKKFFE  160 (232)
T ss_dssp             EEE---SCGGGC-HHHHTTSCEEEEEEET---TSSS--------------------------------------HHHHHH
T ss_pred             EEE---CCHHHH-HHhhccCCccEEEEcC---cHHH--------------------------------------HHHHHH
Confidence            332   354332 33   78999999552   2111                                      233556


Q ss_pred             HHHhhhccCCeEEEEec
Q 016644          221 ARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~  237 (385)
                      .-.+-|+|||+|++...
T Consensus       161 ~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          161 IYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             HHGGGEEEEEEEEEECT
T ss_pred             HHHHhcCCCeEEEEeeC
Confidence            67799999999988543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.24  E-value=0.00094  Score=60.22  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=26.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN  115 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N  115 (385)
                      +..+|+|+|||+|..++.+.+.+              .|..+|+.-|....
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~--------------~~~~~v~~vD~s~~  109 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIV--------------GWEGKIFGIEFSPR  109 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHH--------------CTTSEEEEEESCHH
T ss_pred             CCCEEEEEeccCCHHHHHHHHHh--------------CCCeEEEEEECCHH
Confidence            34689999999999998886433              13357787787543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.23  E-value=0.00018  Score=69.28  Aligned_cols=117  Identities=10%  Similarity=-0.001  Sum_probs=68.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhc-CcCCce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLAS-DTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~-~~~~~~  143 (385)
                      ++.+|+|+|||+|..+..+..        +       .+..+|..-|+-..-....-+.++..       ... -..+++
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~ar~~~~~~-------~~~~~~~~~v  134 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLK--------H-------PTVEKAVMVDIDGELVEVAKRHMPEW-------HQGAFDDPRA  134 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTT--------S-------TTCCEEEEEESCHHHHHHHHHHCHHH-------HTTGGGCTTE
T ss_pred             CCCeEEEEcCCcCHHHHHHHh--------c-------CCCCEEEEEECCHHHHHHHHHHhHhh-------ccccccCCce
Confidence            457999999999998887751        1       13468888888543333333333210       000 001122


Q ss_pred             -eeccccCcccccc-CCCCcccEEEccccccc-ccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          144 -FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHW-LSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       144 -f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHW-LS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                       ++.+   +..+-+ .+++++|+|++....|| ++..+..+.                                ...|++
T Consensus       135 ~~~~~---D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~--------------------------------~~~~l~  179 (314)
T 1uir_A          135 VLVID---DARAYLERTEERYDVVIIDLTDPVGEDNPARLLY--------------------------------TVEFYR  179 (314)
T ss_dssp             EEEES---CHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGS--------------------------------SHHHHH
T ss_pred             EEEEc---hHHHHHHhcCCCccEEEECCCCcccccCcchhcc--------------------------------HHHHHH
Confidence             2222   332222 25789999999998888 322222221                                134667


Q ss_pred             HHHhhhccCCeEEEEecc
Q 016644          221 ARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g  238 (385)
                      .-.+-|+|||+|++....
T Consensus       180 ~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          180 LVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             HHHHTEEEEEEEEEEEEE
T ss_pred             HHHHhcCCCcEEEEEccC
Confidence            778999999999997644

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.21  E-value=0.00056  Score=64.85  Aligned_cols=112  Identities=12%  Similarity=0.027  Sum_probs=60.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+.+.                  -+|+-.|+-. +-.. .+..+...       +....+-.|
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~------------------~~V~gVD~s~-m~~~-a~~~~~~~-------~~~~~~v~~  134 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ------------------PNVREVKAYT-LGTS-GHEKPRLV-------ETFGWNLIT  134 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS------------------TTEEEEEEEC-CCCT-TSCCCCCC-------CCTTGGGEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHc------------------CCEEEEECch-hhhh-hhhchhhh-------hhcCCCeEE
Confidence            3478999999999988877521                  2566666633 2000 00000000       000001123


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +.. -+++..  +|++++|+|+|..+ ++... |. + +                      .+     +.+ ..|....+
T Consensus       135 ~~~-~~D~~~--l~~~~fD~Vvsd~~-~~~~~-~~-~-d----------------------~~-----~~l-~~L~~~~r  179 (276)
T 2wa2_A          135 FKS-KVDVTK--MEPFQADTVLCDIG-ESNPT-AA-V-E----------------------AS-----RTL-TVLNVISR  179 (276)
T ss_dssp             EEC-SCCGGG--CCCCCCSEEEECCC-CCCSC-HH-H-H----------------------HH-----HHH-HHHHHHHH
T ss_pred             Eec-cCcHhh--CCCCCcCEEEECCC-cCCCc-hh-h-h----------------------HH-----HHH-HHHHHHHH
Confidence            200 235443  57899999999888 65322 11 0 0                      00     001 15566778


Q ss_pred             hhccCC--eEEEEecc
Q 016644          225 EMKRCG--SMFLVCLG  238 (385)
Q Consensus       225 EL~pGG--~lvl~~~g  238 (385)
                      -|+|||  .|++..+.
T Consensus       180 ~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          180 WLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             HHHHSTTCEEEEEESC
T ss_pred             HhccCCCcEEEEEeCC
Confidence            899999  99987766

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.20  E-value=0.00069  Score=63.90  Aligned_cols=119  Identities=11%  Similarity=0.013  Sum_probs=63.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCch-HHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDF-NTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDF-n~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ..+|+|+|||+|..++.+..        .        ..-+|+..|+++.+. ..+-++.......... .......++ 
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~--------~--------~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~-~~~~~~~~v~  142 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFL--------A--------GADQVVATDYPDPEILNSLESNIREHTANSCS-SETVKRASPK  142 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHH--------T--------TCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCE
T ss_pred             CCeEEEecccccHHHHHHHH--------c--------CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc-cccCCCCCeE
Confidence            46899999999998876541        1        113789999842222 2222222000000000 000000122 


Q ss_pred             eeccccCccccccC---CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLF---PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       144 f~~~vpgSFy~rLf---P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      +....-++....+.   +++++|+|+++.++++....+.                                      +|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~--------------------------------------ll~  184 (281)
T 3bzb_A          143 VVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDA--------------------------------------LLR  184 (281)
T ss_dssp             EEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHH--------------------------------------HHH
T ss_pred             EEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHH--------------------------------------HHH
Confidence            22111222233333   6789999999999988544332                                      334


Q ss_pred             HHHhhhc---c--CCeEEEEeccC
Q 016644          221 ARSKEMK---R--CGSMFLVCLGR  239 (385)
Q Consensus       221 ~Ra~EL~---p--GG~lvl~~~g~  239 (385)
                      .-.+-|+   |  ||++++.+..+
T Consensus       185 ~l~~~Lk~~~p~~gG~l~v~~~~~  208 (281)
T 3bzb_A          185 SVKMLLALPANDPTAVALVTFTHH  208 (281)
T ss_dssp             HHHHHBCCTTTCTTCEEEEEECC-
T ss_pred             HHHHHhcccCCCCCCEEEEEEEee
Confidence            4567788   9  99998876554

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.20  E-value=0.00076  Score=63.49  Aligned_cols=20  Identities=30%  Similarity=0.600  Sum_probs=17.0

Q ss_pred             CceEEeeeCCCCCcchHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~   84 (385)
                      +..+|+|+|||+|..|..+.
T Consensus        74 ~g~~VLDlGcGtG~~s~~la   93 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAA   93 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHH
T ss_pred             CCCEEEEeCcCCCHHHHHHH
Confidence            34799999999999887775

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.19  E-value=0.00098  Score=63.74  Aligned_cols=24  Identities=13%  Similarity=0.137  Sum_probs=18.7

Q ss_pred             HHHHHHHHHhhhccCCeEEEEecc
Q 016644          215 LAAFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       215 ~~~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                      +...|+.-.+-|+|||+|++..+.
T Consensus       150 ~~~~l~~a~r~LkpGG~~v~~~~~  173 (290)
T 2xyq_A          150 FTYLCGFIKQKLALGGSIAVKITE  173 (290)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEec
Confidence            345667778999999999997644

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.17  E-value=0.0005  Score=65.64  Aligned_cols=114  Identities=10%  Similarity=-0.047  Sum_probs=61.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..+..+.+        .       .+..+|+.-|+-..-....-+.++..       ...-..+++ 
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~~~~a~~~~~~~-------~~~~~~~~v~  147 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLK--------H-------DSVEKAILCEVDGLVIEAARKYLKQT-------SCGFDDPRAE  147 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTT--------S-------TTCSEEEEEESCHHHHHHHHHHCHHH-------HGGGGCTTEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHh--------c-------CCCCEEEEEECCHHHHHHHHHHhHhh-------ccccCCCceE
Confidence            457999999999998887752        1       13468888898543333333333210       000001122 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      ++.+   +...-+ .+++++|+|++...-+|+.. +..+                                .-..||+.-
T Consensus       148 ~~~~---D~~~~l~~~~~~fD~Ii~d~~~~~~~~-~~~l--------------------------------~~~~~l~~~  191 (296)
T 1inl_A          148 IVIA---NGAEYVRKFKNEFDVIIIDSTDPTAGQ-GGHL--------------------------------FTEEFYQAC  191 (296)
T ss_dssp             EEES---CHHHHGGGCSSCEEEEEEEC-----------C--------------------------------CSHHHHHHH
T ss_pred             EEEC---cHHHHHhhCCCCceEEEEcCCCcccCc-hhhh--------------------------------hHHHHHHHH
Confidence            2222   322222 24688999998766565432 1111                                013466667


Q ss_pred             HhhhccCCeEEEEe
Q 016644          223 SKEMKRCGSMFLVC  236 (385)
Q Consensus       223 a~EL~pGG~lvl~~  236 (385)
                      ++-|+|||+|++..
T Consensus       192 ~~~LkpgG~lv~~~  205 (296)
T 1inl_A          192 YDALKEDGVFSAET  205 (296)
T ss_dssp             HHHEEEEEEEEEEC
T ss_pred             HHhcCCCcEEEEEc
Confidence            88999999999875

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.17  E-value=0.00054  Score=65.83  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=16.9

Q ss_pred             ceEEeeeCCCCCcchHHHH
Q 016644           66 PFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~   84 (385)
                      ..+|+|+|||+|..|..+.
T Consensus        83 g~~VLDlGcG~G~~s~~la  101 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCG  101 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHH
T ss_pred             CCEEEEEcCCCCHHHHHHH
Confidence            4799999999999988776

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.16  E-value=0.00077  Score=67.57  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=74.8

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..|..+.+..               +..+|+.+|.-..-...+-+.+...           ....-++
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~~~~~l~~~~~~~~~~-----------g~~~~~~  300 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVA---------------PEAQVVAVDIDEQRLSRVYDNLKRL-----------GMKATVK  300 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHC---------------TTCEEEEEESSTTTHHHHHHHHHHT-----------TCCCEEE
T ss_pred             cCeEEEECCCchHHHHHHHHHc---------------CCCEEEEECCCHHHHHHHHHHHHHc-----------CCCeEEE
Confidence            4689999999999999886322               3368999998766655554443210           0111122


Q ss_pred             ccccCcccc--ccCCCCcccEEEc---ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYR--RLFPTRSIDFFHS---AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       146 ~~vpgSFy~--rLfP~~Svd~~~S---s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                         -+++..  ..++++++|.|++   .+.+..+.+.|.....              . +++..    ....+....+|.
T Consensus       301 ---~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~--------------~-~~~~~----~~l~~~q~~~L~  358 (429)
T 1sqg_A          301 ---QGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWL--------------R-RDRDI----PELAQLQSEILD  358 (429)
T ss_dssp             ---ECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHH--------------C-CTTHH----HHHHHHHHHHHH
T ss_pred             ---eCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhc--------------C-CHHHH----HHHHHHHHHHHH
Confidence               223322  2256789999997   3445555555543211              0 11111    122333467788


Q ss_pred             HHHhhhccCCeEEEEecc
Q 016644          221 ARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g  238 (385)
                      .-++-|+|||+|+++...
T Consensus       359 ~a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          359 AIWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             HHGGGEEEEEEEEEEESC
T ss_pred             HHHHhcCCCCEEEEEECC
Confidence            888999999999998744

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.13  E-value=0.0015  Score=63.65  Aligned_cols=78  Identities=12%  Similarity=0.135  Sum_probs=43.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        .        +..+|+.-|+.. ....+-+.+..          .+-..++ 
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~--------~--------g~~~V~~vD~s~-~~~~a~~~~~~----------~~l~~~v-  101 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQ--------A--------GARKIYAVEAST-MAQHAEVLVKS----------NNLTDRI-  101 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEEECST-HHHHHHHHHHH----------TTCTTTE-
T ss_pred             CcCEEEEcCCCccHHHHHHHh--------C--------CCCEEEEECCHH-HHHHHHHHHHH----------cCCCCcE-
Confidence            347999999999998877652        1        235888889842 32222111110          0000122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLH  172 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alH  172 (385)
                       ..+.++ +..+-+++++|+|+|...++
T Consensus       102 -~~~~~d-~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A          102 -VVIPGK-VEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             -EEEESC-TTTCCCSSCEEEEEECCCBT
T ss_pred             -EEEEcc-hhhCCCCCceeEEEEeCchh
Confidence             123335 33443347899999997654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.12  E-value=0.0014  Score=61.93  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=66.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..+..+..        .       .|..++...|+-..-....-+.++.....    .  + .+++ 
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~a~~~~~~~~~~----~--~-~~~v~  135 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCK--------Y-------KSVENIDICEIDETVIEVSKIYFKNISCG----Y--E-DKRVN  135 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTT--------C-------TTCCEEEEEESCHHHHHHHHHHCTTTSGG----G--G-STTEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHhHHhccc----c--C-CCcEE
Confidence            467999999999998877651        1       14568888898543333333344422100    0  0 1121 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      ++.+   +..+-+ ..++++|+|++....+|..  +..+..                                ..|++..
T Consensus       136 ~~~~---D~~~~l~~~~~~fD~Ii~d~~~~~~~--~~~l~~--------------------------------~~~l~~~  178 (283)
T 2i7c_A          136 VFIE---DASKFLENVTNTYDVIIVDSSDPIGP--AETLFN--------------------------------QNFYEKI  178 (283)
T ss_dssp             EEES---CHHHHHHHCCSCEEEEEEECCCTTTG--GGGGSS--------------------------------HHHHHHH
T ss_pred             EEEC---ChHHHHHhCCCCceEEEEcCCCCCCc--chhhhH--------------------------------HHHHHHH
Confidence            2222   332222 1378999999977666521  111100                                3566777


Q ss_pred             HhhhccCCeEEEEec
Q 016644          223 SKEMKRCGSMFLVCL  237 (385)
Q Consensus       223 a~EL~pGG~lvl~~~  237 (385)
                      .+-|+|||+|++...
T Consensus       179 ~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          179 YNALKPNGYCVAQCE  193 (283)
T ss_dssp             HHHEEEEEEEEEECC
T ss_pred             HHhcCCCcEEEEECC
Confidence            899999999988753

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.10  E-value=0.00029  Score=64.34  Aligned_cols=104  Identities=15%  Similarity=0.107  Sum_probs=61.0

Q ss_pred             eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcC-Cceee
Q 016644           67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTH-RSYFA  145 (385)
Q Consensus        67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~-~~~f~  145 (385)
                      .+|+|+|||+|..|+.+...+              ++..+|+..|+-.......-+.+...          .-. .++  
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~~----------g~~~~~i--  111 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGL--------------ADNTTLTCIDPESEHQRQAKALFREA----------GYSPSRV--  111 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHS--------------CTTSEEEEECSCHHHHHHHHHHHHHT----------TCCGGGE--
T ss_pred             CCEEEEcCCchHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHc----------CCCcCcE--
Confidence            489999999999999886322              13578899998544333332222110          000 122  


Q ss_pred             ccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       146 ~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..+-|+..+-+  ++++++|+||+...   ..                                      ++..||..-.
T Consensus       112 ~~~~gda~~~l~~~~~~~fD~V~~d~~---~~--------------------------------------~~~~~l~~~~  150 (221)
T 3dr5_A          112 RFLLSRPLDVMSRLANDSYQLVFGQVS---PM--------------------------------------DLKALVDAAW  150 (221)
T ss_dssp             EEECSCHHHHGGGSCTTCEEEEEECCC---TT--------------------------------------THHHHHHHHH
T ss_pred             EEEEcCHHHHHHHhcCCCcCeEEEcCc---HH--------------------------------------HHHHHHHHHH
Confidence            12233443333  34789999987531   11                                      1223455567


Q ss_pred             hhhccCCeEEEEec
Q 016644          224 KEMKRCGSMFLVCL  237 (385)
Q Consensus       224 ~EL~pGG~lvl~~~  237 (385)
                      +-|+|||++++...
T Consensus       151 ~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          151 PLLRRGGALVLADA  164 (221)
T ss_dssp             HHEEEEEEEEETTT
T ss_pred             HHcCCCcEEEEeCC
Confidence            88999999998553

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.10  E-value=0.00077  Score=65.17  Aligned_cols=114  Identities=11%  Similarity=0.008  Sum_probs=66.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..+..+..        .       .|..+|+.-|+-..-....-+.++......      + .+++ 
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDis~~~l~~ar~~~~~~~~~~------~-~~~v~  173 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCK--------Y-------KSVENIDICEIDETVIEVSKIYFKNISCGY------E-DKRVN  173 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTT--------C-------TTCCEEEEEESCHHHHHHHHHHCTTTSGGG------G-STTEE
T ss_pred             CCCEEEEEcCCccHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHHHhhcccc------C-CCcEE
Confidence            457999999999998887751        1       145788999985544444444444210000      0 1122 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      ++.   ++..+-+ .+++++|+|++...-+|-  .+..+.                                -..|++.-
T Consensus       174 ~~~---~D~~~~l~~~~~~fDvIi~d~~~p~~--~~~~l~--------------------------------~~~~l~~~  216 (321)
T 2pt6_A          174 VFI---EDASKFLENVTNTYDVIIVDSSDPIG--PAETLF--------------------------------NQNFYEKI  216 (321)
T ss_dssp             EEE---SCHHHHHHHCCSCEEEEEEECCCSSS--GGGGGS--------------------------------SHHHHHHH
T ss_pred             EEE---ccHHHHHhhcCCCceEEEECCcCCCC--cchhhh--------------------------------HHHHHHHH
Confidence            222   3433222 246899999997654441  011110                                03466667


Q ss_pred             HhhhccCCeEEEEec
Q 016644          223 SKEMKRCGSMFLVCL  237 (385)
Q Consensus       223 a~EL~pGG~lvl~~~  237 (385)
                      .+-|+|||+|++...
T Consensus       217 ~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          217 YNALKPNGYCVAQCE  231 (321)
T ss_dssp             HHHEEEEEEEEEEEC
T ss_pred             HHhcCCCcEEEEEcC
Confidence            899999999998763

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.08  E-value=0.0002  Score=62.09  Aligned_cols=80  Identities=10%  Similarity=-0.046  Sum_probs=45.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.+        .        +..+|+..|+-.......-+.+..          ..-..++ 
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~--------~--------~~~~v~~vD~~~~~~~~a~~~~~~----------~~~~~~~-   96 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVS--------R--------GMDKSICIEKNFAALKVIKENIAI----------TKEPEKF-   96 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHH--------T--------TCSEEEEEESCHHHHHHHHHHHHH----------HTCGGGE-
T ss_pred             CCCCEEEeCCccCHHHHHHHH--------c--------CCCEEEEEECCHHHHHHHHHHHHH----------hCCCcce-
Confidence            346899999999999887652        1        235788889854333332222210          0000111 


Q ss_pred             eccccCcccccc----CCCCcccEEEcccccc
Q 016644          145 AAGVPGSFYRRL----FPTRSIDFFHSAFSLH  172 (385)
Q Consensus       145 ~~~vpgSFy~rL----fP~~Svd~~~Ss~alH  172 (385)
                       ..+.+++.+-+    ++++++|+++++..+|
T Consensus        97 -~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~  127 (187)
T 2fhp_A           97 -EVRKMDANRALEQFYEEKLQFDLVLLDPPYA  127 (187)
T ss_dssp             -EEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred             -EEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence             12234554422    2378999999987655

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.04  E-value=0.00024  Score=65.01  Aligned_cols=35  Identities=14%  Similarity=0.331  Sum_probs=25.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      ..+|+|+|||+|..++.+....              ++..+|+..|.-.
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~   95 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASAL--------------PEDGKILCCDVSE   95 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHS--------------CTTCEEEEEESCH
T ss_pred             cCEEEEEeCCCCHHHHHHHHhC--------------CCCCEEEEEECCH
Confidence            4689999999999998876322              1135777777643

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.04  E-value=0.00033  Score=62.96  Aligned_cols=39  Identities=8%  Similarity=0.092  Sum_probs=28.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCch
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDF  117 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDF  117 (385)
                      ++.+|+|+|||+|..|+.+...+              ++..+|+..|+-....
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~   96 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGL--------------SSGGRVVTLEASEKHA   96 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTC--------------CSSCEEEEEESCHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHhC--------------CCCCEEEEEECCHHHH
Confidence            35799999999999998876321              1257889999854333

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.01  E-value=0.00091  Score=63.00  Aligned_cols=102  Identities=9%  Similarity=-0.088  Sum_probs=61.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      ..+|+|+|||+|..|+.+...        .       +. +|+..|+-......+-+++...          .-.+.+ |
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~--------~-------~~-~V~~vD~s~~~~~~a~~n~~~n----------~~~~~v~~  179 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVY--------G-------KA-KVIAIEKDPYTFKFLVENIHLN----------KVEDRMSA  179 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHH--------T-------CC-EEEEECCCHHHHHHHHHHHHHT----------TCTTTEEE
T ss_pred             CCEEEEecccCCHHHHHHHHh--------C-------CC-EEEEEECCHHHHHHHHHHHHHc----------CCCceEEE
Confidence            468999999999999888632        1       33 7899998554443333322100          001122 3


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +.+   +.. .+.+++++|++++.        .|...                                  ..||..-.+
T Consensus       180 ~~~---D~~-~~~~~~~fD~Vi~~--------~p~~~----------------------------------~~~l~~~~~  213 (278)
T 2frn_A          180 YNM---DNR-DFPGENIADRILMG--------YVVRT----------------------------------HEFIPKALS  213 (278)
T ss_dssp             ECS---CTT-TCCCCSCEEEEEEC--------CCSSG----------------------------------GGGHHHHHH
T ss_pred             EEC---CHH-HhcccCCccEEEEC--------CchhH----------------------------------HHHHHHHHH
Confidence            333   533 33348899999884        22111                                  123344567


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      -|+|||++++.....
T Consensus       214 ~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          214 IAKDGAIIHYHNTVP  228 (278)
T ss_dssp             HEEEEEEEEEEEEEE
T ss_pred             HCCCCeEEEEEEeec
Confidence            899999999988664

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.99  E-value=0.00037  Score=62.63  Aligned_cols=38  Identities=13%  Similarity=0.196  Sum_probs=27.8

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCch
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDF  117 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDF  117 (385)
                      +.+|+|+|||+|..|+.+...+              ++..+|+.-|+-....
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~  102 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLAL--------------PKDGTLITCDVDEKST  102 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTC--------------CTTCEEEEEESCHHHH
T ss_pred             CCEEEEeCCcchHHHHHHHHhC--------------CCCCEEEEEeCCHHHH
Confidence            4699999999999998886322              1257889999854333

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.97  E-value=0.00055  Score=66.11  Aligned_cols=113  Identities=12%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..+..+..        .       .|..+|..-|+-..-....-+.++.....    .   ..+++ 
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~Ar~~~~~~~~~----~---~~~rv~  165 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLK--------H-------ESVEKVTMCEIDEMVIDVAKKFLPGMSCG----F---SHPKLD  165 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTT--------C-------TTCCEEEEECSCHHHHHHHHHHCTTTSGG----G---GCTTEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHHHHhccc----c---CCCCEE
Confidence            457999999999998887751        1       14578899998543333333344421000    0   01122 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +.   -++..+-+ .+++++|+|++...-||-  .+..+                         |.       ..|++.-
T Consensus       166 ~~---~~D~~~~l~~~~~~fD~Ii~d~~~~~~--~~~~l-------------------------~t-------~~~l~~~  208 (314)
T 2b2c_A          166 LF---CGDGFEFLKNHKNEFDVIITDSSDPVG--PAESL-------------------------FG-------QSYYELL  208 (314)
T ss_dssp             EE---CSCHHHHHHHCTTCEEEEEECCC-----------------------------------------------HHHHH
T ss_pred             EE---EChHHHHHHhcCCCceEEEEcCCCCCC--cchhh-------------------------hH-------HHHHHHH
Confidence            22   23433222 267899999997654431  00000                         00       4566777


Q ss_pred             HhhhccCCeEEEEe
Q 016644          223 SKEMKRCGSMFLVC  236 (385)
Q Consensus       223 a~EL~pGG~lvl~~  236 (385)
                      .+-|+|||+|++..
T Consensus       209 ~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          209 RDALKEDGILSSQG  222 (314)
T ss_dssp             HHHEEEEEEEEEEC
T ss_pred             HhhcCCCeEEEEEC
Confidence            89999999999876

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.97  E-value=0.0025  Score=61.88  Aligned_cols=116  Identities=10%  Similarity=-0.044  Sum_probs=69.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+....              .|..+++-.|.-.......-+++..           .....+ 
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~--------------~~~~~v~g~Di~~~~i~~a~~n~~~-----------~g~~~i-  256 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTL--------------GPTSPVYAGDLDEKRLGLAREAALA-----------SGLSWI-  256 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHH--------------CTTSCEEEEESCHHHHHHHHHHHHH-----------TTCTTC-
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhh--------------CCCceEEEEECCHHHHHHHHHHHHH-----------cCCCce-
Confidence            34689999999999888775322              0347888999854443333333221           000111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-+++.+-..|.+++|+++++--.+|.....                              .....+...++..-.+
T Consensus       257 -~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~------------------------------~~~~~~~~~~~~~~~~  305 (354)
T 3tma_A          257 -RFLRADARHLPRFFPEVDRILANPPHGLRLGRK------------------------------EGLFHLYWDFLRGALA  305 (354)
T ss_dssp             -EEEECCGGGGGGTCCCCSEEEECCCSCC----C------------------------------HHHHHHHHHHHHHHHH
T ss_pred             -EEEeCChhhCccccCCCCEEEECCCCcCccCCc------------------------------ccHHHHHHHHHHHHHH
Confidence             122336544446677789999976655521100                              1223445678888889


Q ss_pred             hhccCCeEEEEec
Q 016644          225 EMKRCGSMFLVCL  237 (385)
Q Consensus       225 EL~pGG~lvl~~~  237 (385)
                      -|+|||++++...
T Consensus       306 ~LkpgG~l~i~t~  318 (354)
T 3tma_A          306 LLPPGGRVALLTL  318 (354)
T ss_dssp             TSCTTCEEEEEES
T ss_pred             hcCCCcEEEEEeC
Confidence            9999999999864

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.96  E-value=0.0023  Score=60.29  Aligned_cols=114  Identities=14%  Similarity=0.101  Sum_probs=65.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..+..+.+        +       .+..+|..-|+-..-....-+.++....      ..+ .+++ 
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vEid~~~v~~ar~~~~~~~~------~~~-~~rv~  132 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILK--------H-------PSVKKATLVDIDGKVIEYSKKFLPSIAG------KLD-DPRVD  132 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTT--------C-------TTCSEEEEEESCHHHHHHHHHHCHHHHT------TTT-STTEE
T ss_pred             CCCEEEEECCchHHHHHHHHh--------C-------CCCceEEEEECCHHHHHHHHHHhHhhcc------ccC-CCceE
Confidence            468999999999998877651        1       1346788888854333333333321000      000 1121 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      ++.   ++..+-| .+++++|+|++....+|..  +..+.                                -..|++.-
T Consensus       133 v~~---~D~~~~l~~~~~~fD~Ii~d~~~~~~~--~~~l~--------------------------------~~~~~~~~  175 (275)
T 1iy9_A          133 VQV---DDGFMHIAKSENQYDVIMVDSTEPVGP--AVNLF--------------------------------TKGFYAGI  175 (275)
T ss_dssp             EEE---SCSHHHHHTCCSCEEEEEESCSSCCSC--CCCCS--------------------------------TTHHHHHH
T ss_pred             EEE---CcHHHHHhhCCCCeeEEEECCCCCCCc--chhhh--------------------------------HHHHHHHH
Confidence            222   2433222 2468999999987766631  22211                                02355666


Q ss_pred             HhhhccCCeEEEEec
Q 016644          223 SKEMKRCGSMFLVCL  237 (385)
Q Consensus       223 a~EL~pGG~lvl~~~  237 (385)
                      .+-|+|||+|++...
T Consensus       176 ~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          176 AKALKEDGIFVAQTD  190 (275)
T ss_dssp             HHHEEEEEEEEEECC
T ss_pred             HHhcCCCcEEEEEcC
Confidence            789999999988753

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.92  E-value=0.0013  Score=63.34  Aligned_cols=127  Identities=13%  Similarity=0.015  Sum_probs=68.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..|+.+.+.+              .+..+|+..|+-......+-+.+..          . ...++  
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~--------------~~~~~v~avD~s~~~l~~a~~~~~~----------~-g~~~v--  171 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLM--------------RNDGVIYAFDVDENRLRETRLNLSR----------L-GVLNV--  171 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHT--------------TTCSEEEEECSCHHHHHHHHHHHHH----------H-TCCSE--
T ss_pred             CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEcCCHHHHHHHHHHHHH----------h-CCCeE--
Confidence            4689999999999999886332              1246889999865444444333321          0 01121  


Q ss_pred             ccccCccccccCCCCcccEEEccc---ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAF---SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~---alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      ..+-+++..-..+++++|.|++..   .+.-+.+.|.....               -+++.    .....+....+|..-
T Consensus       172 ~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~---------------~~~~~----~~~~~~~q~~~L~~~  232 (315)
T 1ixk_A          172 ILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWN---------------RTMDD----IKFCQGLQMRLLEKG  232 (315)
T ss_dssp             EEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC-----------------------CCHHH----HHHHHHHHHHHHHHH
T ss_pred             EEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhc---------------CCHHH----HHHHHHHHHHHHHHH
Confidence            112234322112467899999742   12222233322110               01221    122334456788888


Q ss_pred             HhhhccCCeEEEEecc
Q 016644          223 SKEMKRCGSMFLVCLG  238 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g  238 (385)
                      ++-|+|||+|++++..
T Consensus       233 ~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          233 LEVLKPGGILVYSTCS  248 (315)
T ss_dssp             HHHEEEEEEEEEEESC
T ss_pred             HHhCCCCCEEEEEeCC
Confidence            9999999999997643

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=96.85  E-value=0.00023  Score=66.48  Aligned_cols=117  Identities=14%  Similarity=0.074  Sum_probs=68.9

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +.+-+|+|+|||+|+.++..+                  +...+...|+-...-+.+-+.+..+           ..+--
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~------------------~~~~y~a~DId~~~i~~ar~~~~~~-----------g~~~~  154 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER------------------GIASVWGCDIHQGLGDVITPFAREK-----------DWDFT  154 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT------------------TCSEEEEEESBHHHHHHHHHHHHHT-----------TCEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc------------------cCCeEEEEeCCHHHHHHHHHHHHhc-----------CCCce
Confidence            357899999999999998876                  3578888888544333332222110           00111


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCC-------CHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGA-------NEHTANAYKKQFQT  213 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~-------~~~v~~ay~~q~~~  213 (385)
                      |..   .++.... |+.+.|++.++-++|-|.+.......+.-..+|.++|.++--       ++-..+-|+.+|++
T Consensus       155 ~~v---~D~~~~~-~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~  227 (253)
T 3frh_A          155 FAL---QDVLCAP-PAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEG  227 (253)
T ss_dssp             EEE---CCTTTSC-CCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHH
T ss_pred             EEE---eecccCC-CCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHH
Confidence            222   2444445 555999999999999997766554334444666666665542       22244555555444

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.85  E-value=0.00076  Score=65.69  Aligned_cols=113  Identities=11%  Similarity=0.022  Sum_probs=65.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..++.+..        +       .|..+|+.-|+-.......-+.++..       ...-..+++ 
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~--------~-------~~~~~V~~VDis~~~l~~Ar~~~~~~-------~~gl~~~rv~  177 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVAR--------H-------ASIEQIDMCEIDKMVVDVSKQFFPDV-------AIGYEDPRVN  177 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTT--------C-------TTCCEEEEEESCHHHHHHHHHHCHHH-------HGGGGSTTEE
T ss_pred             CCCEEEEECCCccHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHHHhh-------ccccCCCcEE
Confidence            457999999999998887751        1       14578899998554333333333210       000001122 


Q ss_pred             eeccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       144 f~~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      ++.   ++..+-+  ++++++|+|++....+|-  .+..+.                                ...|++.
T Consensus       178 ~~~---~D~~~~l~~~~~~~fDlIi~d~~~p~~--~~~~l~--------------------------------~~~~l~~  220 (334)
T 1xj5_A          178 LVI---GDGVAFLKNAAEGSYDAVIVDSSDPIG--PAKELF--------------------------------EKPFFQS  220 (334)
T ss_dssp             EEE---SCHHHHHHTSCTTCEEEEEECCCCTTS--GGGGGG--------------------------------SHHHHHH
T ss_pred             EEE---CCHHHHHHhccCCCccEEEECCCCccC--cchhhh--------------------------------HHHHHHH
Confidence            222   3433322  357899999997664441  111110                                1356677


Q ss_pred             HHhhhccCCeEEEEe
Q 016644          222 RSKEMKRCGSMFLVC  236 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~  236 (385)
                      -.+-|+|||+|++..
T Consensus       221 ~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          221 VARALRPGGVVCTQA  235 (334)
T ss_dssp             HHHHEEEEEEEEEEC
T ss_pred             HHHhcCCCcEEEEec
Confidence            788999999998864

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.83  E-value=0.00084  Score=61.98  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=27.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN  115 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N  115 (385)
                      ++.+|+|+|||+|..|+.+...+              ++..+|+.-|+-..
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~--------------~~~~~v~~iD~~~~   96 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLAL--------------PDDGQVITCDINEG   96 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTS--------------CTTCEEEEEECCCS
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhC--------------CCCCEEEEEECCHH
Confidence            35699999999999999876322              12578888888543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.83  E-value=0.00033  Score=66.23  Aligned_cols=122  Identities=13%  Similarity=0.074  Sum_probs=77.3

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +.+-+|+|+|||.|+.|+.++.               ..|..+++..|.-...-..+-..+..+           ..+.-
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~---------------~~p~a~y~a~DId~~~le~a~~~l~~~-----------g~~~~  184 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMG---------------LPAETVYIASDIDARLVGFVDEALTRL-----------NVPHR  184 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTT---------------CCTTCEEEEEESBHHHHHHHHHHHHHT-----------TCCEE
T ss_pred             CCCceeeeeccCccHHHHHHHh---------------hCCCCEEEEEeCCHHHHHHHHHHHHhc-----------CCCce
Confidence            3478999999999999998872               236789999998443222222222110           00111


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCC-------CHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGA-------NEHTANAYKKQFQTDL  215 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~-------~~~v~~ay~~q~~~D~  215 (385)
                      |..   .++-... |+...|++.++-++|-|.+......=+.-.++|.+.|.++--       ++...+-|+++|+++.
T Consensus       185 ~~v---~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~  259 (281)
T 3lcv_B          185 TNV---ADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQA  259 (281)
T ss_dssp             EEE---CCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHH
T ss_pred             EEE---eeecccC-CCCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHH
Confidence            111   1333333 788899999999999996655432225666788889887652       3336788888876654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.82  E-value=0.00054  Score=63.52  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=28.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCch
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDF  117 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDF  117 (385)
                      ++.+|+|+|||+|..|+.+...+              ++..+|+.-|.-....
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~--------------~~~~~v~~iD~s~~~~  117 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAI--------------PEDGKILAMDINKENY  117 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHS--------------CTTCEEEEEESCCHHH
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhC--------------CCCCEEEEEECCHHHH
Confidence            35699999999999998876322              1257889999855333

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.78  E-value=0.00047  Score=64.77  Aligned_cols=124  Identities=7%  Similarity=-0.047  Sum_probs=65.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..|..+.+..        .      ...+|+..|+-..-...+-+.+..           ....++  
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~--------~------~~~~v~avD~~~~~l~~~~~~~~~-----------~g~~~v--  136 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLM--------K------NKGTIVAVEISKTRTKALKSNINR-----------MGVLNT--  136 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHT--------T------TCSEEEEEESCHHHHHHHHHHHHH-----------TTCCSE--
T ss_pred             cCEEEEeCCCccHHHHHHHHHc--------C------CCCEEEEECCCHHHHHHHHHHHHH-----------hCCCcE--
Confidence            4689999999999998876322        0      136889999855444433333211           001121  


Q ss_pred             ccccCccccccC----CCCcccEEEccc---ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYRRLF----PTRSIDFFHSAF---SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAF  218 (385)
Q Consensus       146 ~~vpgSFy~rLf----P~~Svd~~~Ss~---alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~F  218 (385)
                      ..+-+++..-..    +.+++|+|++..   .+..+.+.|..                   +++    -.....++...+
T Consensus       137 ~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~-------------------~~~----~~~~~~~~~~~~  193 (274)
T 3ajd_A          137 IIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV-------------------SEE----DIKYCSLRQKEL  193 (274)
T ss_dssp             EEEESCHHHHHHHHHHTTCCEEEEEEEECCC-------------------------------HH----HHTGGGTCHHHH
T ss_pred             EEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCC-------------------CHH----HHHHHHHHHHHH
Confidence            112234322111    367899998752   22333332200                   000    011122345678


Q ss_pred             HHHHHhhhccCCeEEEEeccC
Q 016644          219 LGARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       219 L~~Ra~EL~pGG~lvl~~~g~  239 (385)
                      |..-++-|+|||+|+++....
T Consensus       194 l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          194 IDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHhCCCCCEEEEEECCC
Confidence            888889999999999987544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.76  E-value=0.0022  Score=65.39  Aligned_cols=78  Identities=12%  Similarity=0.123  Sum_probs=42.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.        + .       +..+|+.-|+.. ....+-+.+..          .+-..++ 
T Consensus       158 ~~~~VLDiGcGtG~la~~la--------~-~-------~~~~V~gvD~s~-~l~~A~~~~~~----------~gl~~~v-  209 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAA--------Q-A-------GARKIYAVEAST-MAQHAEVLVKS----------NNLTDRI-  209 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHH--------H-T-------TCSEEEEEECHH-HHHHHHHHHHH----------TTCTTTE-
T ss_pred             CCCEEEEecCcccHHHHHHH--------H-c-------CCCEEEEEEcHH-HHHHHHHHHHH----------cCCCCcE-
Confidence            34799999999999777554        1 1       346889999843 22222111110          0000122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLH  172 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alH  172 (385)
                       ..+.+++.+ +-+++++|+|+|+..++
T Consensus       210 -~~~~~d~~~-~~~~~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          210 -VVIPGKVEE-VSLPEQVDIIISEPMGY  235 (480)
T ss_dssp             -EEEESCTTT-CCCSSCEEEEECCCCHH
T ss_pred             -EEEECchhh-CccCCCeEEEEEeCchH
Confidence             123345433 32346899999986633

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.70  E-value=0.0037  Score=63.09  Aligned_cols=128  Identities=11%  Similarity=0.096  Sum_probs=70.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..|..+...+        .      ...+|+.+|....-...+-+.+...           ...++- 
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~--------~------~~~~v~a~D~s~~~l~~~~~~~~~~-----------g~~~v~-  313 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELM--------K------NKGKIYAFDVDKMRMKRLKDFVKRM-----------GIKIVK-  313 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHT--------T------TCSEEEEECSCHHHHHHHHHHHHHT-----------TCCSEE-
T ss_pred             cCEEEEeCCCccHHHHHHHHHc--------C------CCCEEEEEcCCHHHHHHHHHHHHHc-----------CCCcEE-
Confidence            4689999999999999886332        0      1268899998654444433332110           011221 


Q ss_pred             ccccCcccc--ccCCCCcccEEEc---ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYR--RLFPTRSIDFFHS---AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       146 ~~vpgSFy~--rLfP~~Svd~~~S---s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                       .+-+++..  .-++++++|.|++   .+.+.-+.+.|......               +++..    ....+.-..+|.
T Consensus       314 -~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~---------------~~~~~----~~l~~~q~~iL~  373 (450)
T 2yxl_A          314 -PLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRL---------------REDKI----NEMSQLQRELLE  373 (450)
T ss_dssp             -EECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHC---------------CTTSH----HHHHHHHHHHHH
T ss_pred             -EEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhC---------------CHHHH----HHHHHHHHHHHH
Confidence             12223322  1155688999996   23344444444432110               11100    111222256778


Q ss_pred             HHHhhhccCCeEEEEeccC
Q 016644          221 ARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .-++-|+|||+|+++....
T Consensus       374 ~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          374 SAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             HHHTTEEEEEEEEEEESCC
T ss_pred             HHHHhcCCCcEEEEEeCCC
Confidence            8889999999999877543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.70  E-value=0.0017  Score=61.38  Aligned_cols=120  Identities=11%  Similarity=0.096  Sum_probs=63.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..+..+..               . +..+|..-|+-..-....-+.+ .......+.......+++ 
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~---------------~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~  137 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQ---------------H-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAK  137 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTT---------------S-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHh---------------C-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEE
Confidence            457999999999998887751               1 3357888887543333333333 210000000000001122 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ++.+-...|...   ++++|+|++....+|-.  +..+.                                -..|++.-+
T Consensus       138 ~~~~D~~~~l~~---~~~fD~Ii~d~~~~~~~--~~~l~--------------------------------~~~~l~~~~  180 (281)
T 1mjf_A          138 LTIGDGFEFIKN---NRGFDVIIADSTDPVGP--AKVLF--------------------------------SEEFYRYVY  180 (281)
T ss_dssp             EEESCHHHHHHH---CCCEEEEEEECCCCC-------TT--------------------------------SHHHHHHHH
T ss_pred             EEECchHHHhcc---cCCeeEEEECCCCCCCc--chhhh--------------------------------HHHHHHHHH
Confidence            222211122222   67899999877666521  11110                                134566678


Q ss_pred             hhhccCCeEEEEecc
Q 016644          224 KEMKRCGSMFLVCLG  238 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g  238 (385)
                      +-|+|||+|++....
T Consensus       181 ~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          181 DALNNPGIYVTQAGS  195 (281)
T ss_dssp             HHEEEEEEEEEEEEE
T ss_pred             HhcCCCcEEEEEcCC
Confidence            899999999988543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=96.67  E-value=0.0043  Score=56.22  Aligned_cols=75  Identities=9%  Similarity=0.021  Sum_probs=42.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+.+.                 ..+++..|+-..-....-+.+...          .-..++ 
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~-----------------~~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~~-  142 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV-----------------AGEVWTFEAVEEFYKTAQKNLKKF----------NLGKNV-  142 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH-----------------SSEEEEECSCHHHHHHHHHHHHHT----------TCCTTE-
T ss_pred             CCCEEEEeCCCccHHHHHHHHh-----------------CCEEEEEecCHHHHHHHHHHHHHc----------CCCCcE-
Confidence            3468999999999988877632                 147788887443333222221100          000111 


Q ss_pred             eccccCccccccCCCCcccEEEcc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSA  168 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss  168 (385)
                       ..+.+++.+.+++++++|++++.
T Consensus       143 -~~~~~d~~~~~~~~~~~D~v~~~  165 (248)
T 2yvl_A          143 -KFFNVDFKDAEVPEGIFHAAFVD  165 (248)
T ss_dssp             -EEECSCTTTSCCCTTCBSEEEEC
T ss_pred             -EEEEcChhhcccCCCcccEEEEC
Confidence             12334555533477899999973

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.65  E-value=0.00032  Score=62.61  Aligned_cols=35  Identities=14%  Similarity=0.132  Sum_probs=25.9

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      +.+|+|+|||+|..|+.+...+              ++..+|+.-|+-.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~   91 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAI--------------SISSRVVMIDPDR   91 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTS--------------CTTCEEEEEESCH
T ss_pred             CCEEEEEcCCccHHHHHHHHhC--------------CCCCEEEEEECCH
Confidence            4689999999999998876221              1246888888743

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.62  E-value=0.00077  Score=64.66  Aligned_cols=115  Identities=13%  Similarity=0.076  Sum_probs=63.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      ++.+|+|+|||+|..++.+.+        +       .+..+|+.-|+-..-....-+.++..    ....  + .+++ 
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~ar~~~~~~----~~~~--~-~~rv~  152 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVK--------H-------PSVESVVQCEIDEDVIQVSKKFLPGM----AIGY--S-SSKLT  152 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTT--------C-------TTCCEEEEEESCHHHHHHHHHHCHHH----HGGG--G-CTTEE
T ss_pred             CCCEEEEECCCchHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHhHHh----hccc--C-CCcEE
Confidence            457999999999998887751        1       14578888898543333333333210    0000  0 1122 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      ++.   ++..+-| .+++++|+|++....+|-.  +..+                                ....|++.-
T Consensus       153 v~~---~Da~~~l~~~~~~fD~Ii~d~~~~~~~--~~~l--------------------------------~~~~~l~~~  195 (304)
T 2o07_A          153 LHV---GDGFEFMKQNQDAFDVIITDSSDPMGP--AESL--------------------------------FKESYYQLM  195 (304)
T ss_dssp             EEE---SCHHHHHHTCSSCEEEEEEECC---------------------------------------------CHHHHHH
T ss_pred             EEE---CcHHHHHhhCCCCceEEEECCCCCCCc--chhh--------------------------------hHHHHHHHH
Confidence            222   2333222 2578999999977665521  1101                                113466777


Q ss_pred             HhhhccCCeEEEEecc
Q 016644          223 SKEMKRCGSMFLVCLG  238 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g  238 (385)
                      .+-|+|||+|++....
T Consensus       196 ~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          196 KTALKEDGVLCCQGEC  211 (304)
T ss_dssp             HHHEEEEEEEEEEEEC
T ss_pred             HhccCCCeEEEEecCC
Confidence            8999999999987644

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.61  E-value=0.0031  Score=61.11  Aligned_cols=128  Identities=10%  Similarity=0.075  Sum_probs=69.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|.|||+|..++.+...+-    +..      ....+++..|+-..-....-..+.         ..+  ...- 
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~----~~~------~~~~~v~GiDi~~~~~~~a~~n~~---------~~g--~~~~-  187 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLE----LKG------DVDVHASGVDVDDLLISLALVGAD---------LQR--QKMT-  187 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHH----TTS------SCEEEEEEEESCHHHHHHHHHHHH---------HHT--CCCE-
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHH----Hhc------CCCceEEEEECCHHHHHHHHHHHH---------hCC--CCce-
Confidence            468999999999998887764431    100      123788999983222222211111         000  0111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHH-HHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDL-AAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~-~~FL~~Ra  223 (385)
                        .+-+++... .+..++|+|+++--++|......  ...-.+...+|.-                   |. ..|+..-.
T Consensus       188 --i~~~D~l~~-~~~~~fD~Ii~NPPfg~~~~~~~--~~~~~~~~~~g~~-------------------~~~~~~l~~~~  243 (344)
T 2f8l_A          188 --LLHQDGLAN-LLVDPVDVVISDLPVGYYPDDEN--AKTFELCREEGHS-------------------FAHFLFIEQGM  243 (344)
T ss_dssp             --EEESCTTSC-CCCCCEEEEEEECCCSEESCHHH--HTTSTTCCSSSCE-------------------EHHHHHHHHHH
T ss_pred             --EEECCCCCc-cccCCccEEEECCCCCCcCchhh--hhhccccCCCCcc-------------------hHHHHHHHHHH
Confidence              122344443 35688999999988877542111  0000000011111                   12 24667778


Q ss_pred             hhhccCCeEEEEecc
Q 016644          224 KEMKRCGSMFLVCLG  238 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g  238 (385)
                      +-|+|||++++++..
T Consensus       244 ~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          244 RYTKPGGYLFFLVPD  258 (344)
T ss_dssp             HTEEEEEEEEEEEEG
T ss_pred             HHhCCCCEEEEEECc
Confidence            889999999998854

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.59  E-value=0.0015  Score=60.00  Aligned_cols=36  Identities=17%  Similarity=0.095  Sum_probs=27.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      ++.+|+|+|||+|..|+.+...+              ++..+++..|+-.
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~--------------~~~~~v~~iD~~~  105 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSI--------------PDDGKITAIDFDR  105 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHS--------------CTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhC--------------CCCCEEEEEECCH
Confidence            35799999999999998886432              1257888888743

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.56  E-value=0.006  Score=57.69  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=25.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      ..+|+|+|||+|..++.+...                |..+|+..|+-.
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~----------------~~~~v~~vDis~  156 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF----------------SDAIVFATDVSS  156 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH----------------SSCEEEEEESCH
T ss_pred             CCEEEEEeCchhHHHHHHHHC----------------CCCEEEEEECCH
Confidence            368999999999998877521                347889999854

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=96.51  E-value=0.0031  Score=59.21  Aligned_cols=104  Identities=9%  Similarity=-0.025  Sum_probs=61.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcC-Cce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTH-RSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~-~~~  143 (385)
                      +..+|+|+|||+|..|+.+....               +..+|+..|+-..-...+-+++..           ... +..
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~---------------~~~~V~~vD~s~~av~~a~~n~~~-----------n~l~~~~  172 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYS---------------KPKLVYAIEKNPTAYHYLCENIKL-----------NKLNNVI  172 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHT---------------CCSEEEEEECCHHHHHHHHHHHHH-----------TTCSSEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhC---------------CCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCEE
Confidence            34689999999999999886322               345889999844333333222210           111 122


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |+.+   +..+ +-..+++|++++....        ..                                  ..+|..-.
T Consensus       173 ~~~~---d~~~-~~~~~~~D~Vi~d~p~--------~~----------------------------------~~~l~~~~  206 (272)
T 3a27_A          173 PILA---DNRD-VELKDVADRVIMGYVH--------KT----------------------------------HKFLDKTF  206 (272)
T ss_dssp             EEES---CGGG-CCCTTCEEEEEECCCS--------SG----------------------------------GGGHHHHH
T ss_pred             EEEC---ChHH-cCccCCceEEEECCcc--------cH----------------------------------HHHHHHHH
Confidence            4333   4322 2115789999876332        11                                  12334456


Q ss_pred             hhhccCCeEEEEeccCC
Q 016644          224 KEMKRCGSMFLVCLGRT  240 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~  240 (385)
                      +.|+|||+++++.....
T Consensus       207 ~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          207 EFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             HHEEEEEEEEEEEEEEG
T ss_pred             HHcCCCCEEEEEEcCcc
Confidence            78999999999887663

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.50  E-value=0.014  Score=57.47  Aligned_cols=121  Identities=13%  Similarity=0.146  Sum_probs=65.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+.+..        .      +..+++..|+-..-....                    .++  
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~--------~------~~~~i~gvDi~~~~~~~a--------------------~~~--   83 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAH--------G------TAYRFVGVEIDPKALDLP--------------------PWA--   83 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHH--------C------SCSEEEEEESCTTTCCCC--------------------TTE--
T ss_pred             CCEEEECCCCChHHHHHHHHHh--------C------CCCeEEEEECCHHHHHhC--------------------CCC--
Confidence            4599999999999888776332        0      346788888743221100                    011  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHH------HHHHHHHH
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQF------QTDLAAFL  219 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~------~~D~~~FL  219 (385)
                      ..+-+++.. ..+.+++|+|+++=-.........              +. ....++..+.|....      ...+..||
T Consensus        84 ~~~~~D~~~-~~~~~~fD~Ii~NPPy~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fl  147 (421)
T 2ih2_A           84 EGILADFLL-WEPGEAFDLILGNPPYGIVGEASK--------------YP-IHVFKAVKDLYKKAFSTWKGKYNLYGAFL  147 (421)
T ss_dssp             EEEESCGGG-CCCSSCEEEEEECCCCCCBSCTTT--------------CS-BCCCHHHHHHHHHHCTTCCTTCCHHHHHH
T ss_pred             cEEeCChhh-cCccCCCCEEEECcCccCcccccc--------------cc-cccCHHHHHHHHHhhhcccCCccHHHHHH
Confidence            112335443 345678999999622222111000              00 000122222222110      11345788


Q ss_pred             HHHHhhhccCCeEEEEecc
Q 016644          220 GARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g  238 (385)
                      ..-.+-|+|||++++.+..
T Consensus       148 ~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          148 EKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             HHHHHHEEEEEEEEEEEEG
T ss_pred             HHHHHHhCCCCEEEEEECh
Confidence            8889999999999998864

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.41  E-value=0.0012  Score=59.30  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=27.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSND  116 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~ND  116 (385)
                      +..+|+|+|||+|..|+.+...+              ++..+|+..|+-..-
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~  106 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALAL--------------PADGRVVTCEVDAQP  106 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEESCSHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHhC--------------CCCCEEEEEECCHHH
Confidence            35699999999999988876321              124688888985433

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.37  E-value=0.0036  Score=63.92  Aligned_cols=127  Identities=8%  Similarity=0.043  Sum_probs=71.8

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      ..+|+|+|||+|..|+.+.+.+              .+.-+|+.+|+-......+-+++..          . ...++ +
T Consensus       118 g~~VLDl~aGpG~kt~~lA~~~--------------~~~g~V~avDis~~~l~~~~~n~~r----------~-g~~nv~~  172 (479)
T 2frx_A          118 PQRVMDVAAAPGSKTTQISARM--------------NNEGAILANEFSASRVKVLHANISR----------C-GISNVAL  172 (479)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHT--------------TTCSEEEEECSSHHHHHHHHHHHHH----------H-TCCSEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHH----------c-CCCcEEE
Confidence            4789999999999999887432              1246899999865554444443321          0 01122 2


Q ss_pred             eccccCcccccc-CCCCcccEEEc---ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHS---AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~S---s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      +.+   +...-. .+++++|.|++   .+...-+.+.|.....               -+++..    ....+.-..+|.
T Consensus       173 ~~~---D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~---------------~~~~~~----~~l~~~q~~iL~  230 (479)
T 2frx_A          173 THF---DGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN---------------WSPESN----QEIAATQRELID  230 (479)
T ss_dssp             ECC---CSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSS---------------CCHHHH----HHHHHHHHHHHH
T ss_pred             EeC---CHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhh---------------cCHhHH----HHHHHHHHHHHH
Confidence            222   321111 14678999987   2334444444433210               122211    222223356788


Q ss_pred             HHHhhhccCCeEEEEeccC
Q 016644          221 ARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .-++-|+|||+||.++...
T Consensus       231 ~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          231 SAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             HHHHHEEEEEEEEEEESCC
T ss_pred             HHHHhcCCCCEEEEecccC
Confidence            8889999999999887443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.36  E-value=0.0073  Score=59.41  Aligned_cols=113  Identities=11%  Similarity=-0.051  Sum_probs=66.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      ..+|+|+|||+|..|+.+...                 ..+|+..|+-..-...+-+++.           .....++ |
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~-----------------~~~v~~vD~s~~~~~~a~~n~~-----------~n~~~~~~~  261 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG-----------------FREVVAVDSSAEALRRAEENAR-----------LNGLGNVRV  261 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH-----------------EEEEEEEESCHHHHHHHHHHHH-----------HTTCTTEEE
T ss_pred             CCeEEEeeeccCHHHHHHHHh-----------------CCEEEEEECCHHHHHHHHHHHH-----------HcCCCCceE
Confidence            368999999999999888631                 1467888874322222222211           0011111 2


Q ss_pred             eccccCccccccC----CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLF----PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rLf----P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      +.   ++..+-+.    ...++|+|++        +.|.....       +.         .     .....+++..+|.
T Consensus       262 ~~---~d~~~~~~~~~~~~~~fD~Ii~--------dpP~~~~~-------~~---------~-----~~~~~~~~~~~l~  309 (382)
T 1wxx_A          262 LE---ANAFDLLRRLEKEGERFDLVVL--------DPPAFAKG-------KK---------D-----VERAYRAYKEVNL  309 (382)
T ss_dssp             EE---SCHHHHHHHHHHTTCCEEEEEE--------CCCCSCCS-------TT---------S-----HHHHHHHHHHHHH
T ss_pred             EE---CCHHHHHHHHHhcCCCeeEEEE--------CCCCCCCC-------hh---------H-----HHHHHHHHHHHHH
Confidence            22   34333221    2678999986        33432110       10         0     1344577888999


Q ss_pred             HHHhhhccCCeEEEEecc
Q 016644          221 ARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g  238 (385)
                      .-.+-|+|||+|+++...
T Consensus       310 ~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          310 RAIKLLKEGGILATASCS  327 (382)
T ss_dssp             HHHHTEEEEEEEEEEECC
T ss_pred             HHHHhcCCCCEEEEEECC
Confidence            999999999999888744

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.26  E-value=0.004  Score=63.34  Aligned_cols=127  Identities=9%  Similarity=-0.038  Sum_probs=70.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|+.+.+.+              ...-+|+.+|+-......+-+++..          .. ..-.+
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~--------------~~~g~V~AvDis~~~l~~a~~n~~r----------~G-~~v~~  155 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARM--------------GGKGLLLANEVDGKRVRGLLENVER----------WG-APLAV  155 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHT--------------TTCSEEEEECSCHHHHHHHHHHHHH----------HC-CCCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHH----------cC-CeEEE
Confidence            34799999999999999887432              1235789999865444444333321          00 11112


Q ss_pred             eccccCcccccc-CCCCcccEEEcc---cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSA---FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss---~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      +.   ++...-. ++++++|.|++.   +..--+.+.|.....               .+++..    ....+.-..+|.
T Consensus       156 ~~---~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~---------------~~~~~~----~~l~~~Q~~iL~  213 (464)
T 3m6w_A          156 TQ---APPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARH---------------WGPSAP----KRMAEVQKALLA  213 (464)
T ss_dssp             EC---SCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGG---------------CCTTHH----HHHHHHHHHHHH
T ss_pred             EE---CCHHHhhhhccccCCEEEECCCcCCccccccChHHhhh---------------cCHHHH----HHHHHHHHHHHH
Confidence            22   2322111 246889999852   222223333433211               112211    122333467888


Q ss_pred             HHHhhhccCCeEEEEecc
Q 016644          221 ARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g  238 (385)
                      .-++-|+|||+||.++..
T Consensus       214 ~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          214 QASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             HHHTTEEEEEEEEEEESC
T ss_pred             HHHHhcCCCcEEEEEecc
Confidence            889999999999987643

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.24  E-value=0.0082  Score=58.19  Aligned_cols=119  Identities=10%  Similarity=0.043  Sum_probs=66.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        .         ..+|+..|+-..-...+-+++..        ...+..+--|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~--------~---------ga~V~~VD~s~~al~~a~~n~~~--------~gl~~~~v~~  207 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAA--------A---------GAEVTHVDASKKAIGWAKENQVL--------AGLEQAPIRW  207 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHHHH--------HTCTTSCEEE
T ss_pred             CCCcEEEcccccCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHH--------cCCCccceEE
Confidence            346899999999999988762        1         13889999854333333222210        0000000113


Q ss_pred             eccccCccccccC----CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLF----PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rLf----P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      +.   ++..+-+.    ..+++|+|++.        .|..-..      .++.++              ...+|+..+|.
T Consensus       208 i~---~D~~~~l~~~~~~~~~fD~Ii~d--------PP~~~~~------~~~~~~--------------~~~~~~~~ll~  256 (332)
T 2igt_A          208 IC---EDAMKFIQREERRGSTYDIILTD--------PPKFGRG------THGEVW--------------QLFDHLPLMLD  256 (332)
T ss_dssp             EC---SCHHHHHHHHHHHTCCBSEEEEC--------CCSEEEC------TTCCEE--------------EHHHHHHHHHH
T ss_pred             EE---CcHHHHHHHHHhcCCCceEEEEC--------CccccCC------chHHHH--------------HHHHHHHHHHH
Confidence            32   24333221    15789999984        2211100      001111              12456778888


Q ss_pred             HHHhhhccCCeEEEEeccC
Q 016644          221 ARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .-.+-|+|||+++++....
T Consensus       257 ~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          257 ICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHHHTBCTTCCEEEEEECC
T ss_pred             HHHHhcCcCcEEEEEECCC
Confidence            8899999999988877554

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.19  E-value=0.0021  Score=58.64  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=25.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      +.+|+|+|||+|..|+.+...+              ++..+++.-|.-.
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~iD~~~  107 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQL--------------PPDGQIIACDQDP  107 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEESCH
T ss_pred             CCEEEEecCCCCHHHHHHHHhC--------------CCCCEEEEEECCH
Confidence            4689999999999998876321              1246788888743

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.16  E-value=0.0087  Score=52.61  Aligned_cols=75  Identities=11%  Similarity=-0.083  Sum_probs=43.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        .        +.-+|+.-|+-.......-+.+.               +--|
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~--------~--------~~~~v~~vD~~~~~~~~a~~~~~---------------~~~~   99 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYL--------L--------GAESVTAFDIDPDAIETAKRNCG---------------GVNF   99 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHH--------T--------TBSEEEEEESCHHHHHHHHHHCT---------------TSEE
T ss_pred             CCCEEEEEeCCccHHHHHHHH--------c--------CCCEEEEEECCHHHHHHHHHhcC---------------CCEE
Confidence            457899999999998887641        1        22468888874333222222221               1112


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccC
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQ  176 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~  176 (385)
                      +   -+++.+  +| +++|+|+++..+||+++
T Consensus       100 ~---~~d~~~--~~-~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A          100 M---VADVSE--IS-GKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             E---ECCGGG--CC-CCEEEEEECCCC-----
T ss_pred             E---ECcHHH--CC-CCeeEEEECCCchhccC
Confidence            2   234433  34 79999999999999864

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.11  E-value=0.0094  Score=59.24  Aligned_cols=113  Identities=13%  Similarity=0.028  Sum_probs=64.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..|+.+..        ..       .  .|+..|+-......+-+++..           .....-+.
T Consensus       215 g~~VLDlg~GtG~~sl~~a~--------~g-------a--~V~avDis~~al~~a~~n~~~-----------ng~~~~~~  266 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAAR--------KG-------A--YALAVDKDLEALGVLDQAALR-----------LGLRVDIR  266 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHH--------TT-------C--EEEEEESCHHHHHHHHHHHHH-----------HTCCCEEE
T ss_pred             CCeEEEcccchhHHHHHHHH--------cC-------C--eEEEEECCHHHHHHHHHHHHH-----------hCCCCcEE
Confidence            46899999999999998862        11       2  388899865444433332210           00011122


Q ss_pred             ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .   ++..+-+ ...+.+|+|++.        .|....                +...     .....+|+..++..-.+
T Consensus       267 ~---~D~~~~l~~~~~~fD~Ii~d--------pP~f~~----------------~~~~-----~~~~~~~~~~ll~~a~~  314 (393)
T 4dmg_A          267 H---GEALPTLRGLEGPFHHVLLD--------PPTLVK----------------RPEE-----LPAMKRHLVDLVREALR  314 (393)
T ss_dssp             E---SCHHHHHHTCCCCEEEEEEC--------CCCCCS----------------SGGG-----HHHHHHHHHHHHHHHHH
T ss_pred             E---ccHHHHHHHhcCCCCEEEEC--------CCcCCC----------------CHHH-----HHHHHHHHHHHHHHHHH
Confidence            2   2333222 113349999864        332111                0011     23456788889999999


Q ss_pred             hhccCCeEEEEecc
Q 016644          225 EMKRCGSMFLVCLG  238 (385)
Q Consensus       225 EL~pGG~lvl~~~g  238 (385)
                      -|+|||+|+++...
T Consensus       315 ~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          315 LLAEEGFLWLSSCS  328 (393)
T ss_dssp             TEEEEEEEEEEECC
T ss_pred             hcCCCCEEEEEECC
Confidence            99999999865533

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=96.02  E-value=0.0061  Score=56.09  Aligned_cols=44  Identities=16%  Similarity=0.148  Sum_probs=31.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQL  123 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~  123 (385)
                      +..+|+|+|||||..++.+..        ..       |.-+|+..|.-..-....-++
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~--------~~-------~~~~V~avDi~~~al~~A~~N   58 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVE--------RG-------QIKSAIAGEVVEGPYQSAVKN   58 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHH--------TT-------SEEEEEEEESSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHH
Confidence            347999999999999998862        21       567899999854444444333

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.95  E-value=0.0074  Score=61.23  Aligned_cols=125  Identities=10%  Similarity=0.004  Sum_probs=69.3

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      ..+|+|+|||+|.-|+.+.+.+        .      ..-+|+.+|+-..-...+-+++..          .. ..++ +
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~--------~------~~g~V~AvDis~~rl~~~~~n~~r----------~g-~~nv~v  160 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQM--------K------GKGLLVTNEIFPKRAKILSENIER----------WG-VSNAIV  160 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHH--------T------TCSEEEEECSSHHHHHHHHHHHHH----------HT-CSSEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHc--------C------CCCEEEEEeCCHHHHHHHHHHHHH----------cC-CCceEE
Confidence            4799999999999999887433        1      236889999855444444333321          00 1122 2


Q ss_pred             eccccCcccccc--CCCCcccEEEcc---cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL--FPTRSIDFFHSA---FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       145 ~~~vpgSFy~rL--fP~~Svd~~~Ss---~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      +.   ++.- .+  ..++++|.|++.   +.+.-+.+.|.....               .+++    ......+.-..+|
T Consensus       161 ~~---~Da~-~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~---------------~~~~----~~~~l~~~Q~~iL  217 (456)
T 3m4x_A          161 TN---HAPA-ELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKE---------------WTEE----SPLYCQKRQQEIL  217 (456)
T ss_dssp             EC---CCHH-HHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHH---------------CCTT----HHHHHHHHHHHHH
T ss_pred             Ee---CCHH-HhhhhccccCCEEEECCCCCCccccccCHHHhhh---------------cCHH----HHHHHHHHHHHHH
Confidence            22   2321 11  235789999862   122222222322110               0111    1123334446788


Q ss_pred             HHHHhhhccCCeEEEEecc
Q 016644          220 GARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g  238 (385)
                      ..-++-|+|||+||.++..
T Consensus       218 ~~a~~~LkpGG~LvYsTCs  236 (456)
T 3m4x_A          218 SSAIKMLKNKGQLIYSTCT  236 (456)
T ss_dssp             HHHHHTEEEEEEEEEEESC
T ss_pred             HHHHHhcCCCcEEEEEEee
Confidence            8899999999999987643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=95.89  E-value=0.0078  Score=56.07  Aligned_cols=105  Identities=12%  Similarity=0.074  Sum_probs=64.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        ..       |.-+|+..|.-..-....-+++...          +-...+ 
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~--------~~-------~~~~V~avDi~~~al~~A~~N~~~~----------gl~~~I-   74 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVK--------NQ-------TASFAIAGEVVDGPFQSAQKQVRSS----------GLTEQI-   74 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHH--------TT-------SEEEEEEEESSHHHHHHHHHHHHHT----------TCTTTE-
T ss_pred             CCCEEEEECCccHHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHHHHHc----------CCCceE-
Confidence            347999999999999998862        21       5568999998554444444433210          001112 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ...-|+-++-+.|..++|++++.           ..                  .           ..-+..||....+
T Consensus        75 -~v~~gD~l~~~~~~~~~D~Ivia-----------gm------------------G-----------g~lI~~IL~~~~~  113 (244)
T 3gnl_A           75 -DVRKGNGLAVIEKKDAIDTIVIA-----------GM------------------G-----------GTLIRTILEEGAA  113 (244)
T ss_dssp             -EEEECSGGGGCCGGGCCCEEEEE-----------EE------------------C-----------HHHHHHHHHHTGG
T ss_pred             -EEEecchhhccCccccccEEEEe-----------CC------------------c-----------hHHHHHHHHHHHH
Confidence             12334666666655568988752           11                  0           0114456666778


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+++|+||++-
T Consensus       114 ~L~~~~~lIlq~  125 (244)
T 3gnl_A          114 KLAGVTKLILQP  125 (244)
T ss_dssp             GGTTCCEEEEEE
T ss_pred             HhCCCCEEEEEc
Confidence            889999998875

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=95.66  E-value=0.011  Score=54.61  Aligned_cols=105  Identities=9%  Similarity=0.041  Sum_probs=64.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||||..++.+..        ..       |.-+|+..|+-..-....-+++...          +-...+ 
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~--------~~-------~~~~V~AvDi~~~al~~A~~N~~~~----------gl~~~I-   74 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQ--------MG-------YCDFAIAGEVVNGPYQSALKNVSEH----------GLTSKI-   74 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHH--------TT-------CEEEEEEEESSHHHHHHHHHHHHHT----------TCTTTE-
T ss_pred             CCCEEEEECCchHHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHHHHHc----------CCCCcE-
Confidence            347999999999999998862        21       5568999998654555444433210          001112 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+-|+-++-+.|.+.+|++++.           ..                  ..           .-+..||....+
T Consensus        75 -~~~~gD~l~~~~~~~~~D~Ivia-----------Gm------------------Gg-----------~lI~~IL~~~~~  113 (230)
T 3lec_A           75 -DVRLANGLSAFEEADNIDTITIC-----------GM------------------GG-----------RLIADILNNDID  113 (230)
T ss_dssp             -EEEECSGGGGCCGGGCCCEEEEE-----------EE------------------CH-----------HHHHHHHHHTGG
T ss_pred             -EEEECchhhccccccccCEEEEe-----------CC------------------ch-----------HHHHHHHHHHHH
Confidence             12334666666665678887742           11                  00           114456666677


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+++|+||++-
T Consensus       114 ~l~~~~~lIlqp  125 (230)
T 3lec_A          114 KLQHVKTLVLQP  125 (230)
T ss_dssp             GGTTCCEEEEEE
T ss_pred             HhCcCCEEEEEC
Confidence            799999998876

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=95.40  E-value=0.0091  Score=58.63  Aligned_cols=81  Identities=11%  Similarity=-0.080  Sum_probs=47.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+...        .       +..+|+-.|+-.......-+++...         +-...--|
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~--------~-------~~~~v~g~Dis~~~l~~A~~n~~~~---------gl~~~i~~  272 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALR--------R-------YSGEIIGIEKYRKHLIGAEMNALAA---------GVLDKIKF  272 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHT--------T-------CCSCEEEEESCHHHHHHHHHHHHHT---------TCGGGCEE
T ss_pred             CCCEEEEccCcCcHHHHHHHHh--------C-------CCCeEEEEeCCHHHHHHHHHHHHHc---------CCCCceEE
Confidence            3468999999999988877521        1       2237888898554444433332210         00001112


Q ss_pred             eccccCccccccCCCCcccEEEcccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLH  172 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alH  172 (385)
                      .   -+++.+--+|++++|+|+++--++
T Consensus       273 ~---~~D~~~~~~~~~~fD~Ii~npPyg  297 (373)
T 3tm4_A          273 I---QGDATQLSQYVDSVDFAISNLPYG  297 (373)
T ss_dssp             E---ECCGGGGGGTCSCEEEEEEECCCC
T ss_pred             E---ECChhhCCcccCCcCEEEECCCCC
Confidence            2   236555446789999999975544

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=95.33  E-value=0.026  Score=55.58  Aligned_cols=114  Identities=11%  Similarity=-0.030  Sum_probs=66.3

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCC-c-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHR-S-Y  143 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~-~-~  143 (385)
                      ..+|+|+|||+|..|+.+..        .        ..-+|+..|+-..-...+-+++..           .... + -
T Consensus       218 ~~~VLDl~~G~G~~~~~la~--------~--------g~~~v~~vD~s~~~l~~a~~n~~~-----------n~~~~~v~  270 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAI--------A--------GADEVIGIDKSPRAIETAKENAKL-----------NGVEDRMK  270 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHH--------T--------TCSEEEEEESCHHHHHHHHHHHHH-----------TTCGGGEE
T ss_pred             CCeEEEecCCCCHHHHHHHH--------C--------CCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCccce
Confidence            46899999999999988762        1        124788888744333222222210           0000 1 1


Q ss_pred             eeccccCccccccC----CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLF----PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL  219 (385)
Q Consensus       144 f~~~vpgSFy~rLf----P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL  219 (385)
                      |+.   ++..+-+.    +.+++|+|++.        .|....       ++         ..+     ....+++..+|
T Consensus       271 ~~~---~d~~~~~~~~~~~~~~fD~Vi~d--------pP~~~~-------~~---------~~~-----~~~~~~~~~~l  318 (396)
T 2as0_A          271 FIV---GSAFEEMEKLQKKGEKFDIVVLD--------PPAFVQ-------HE---------KDL-----KAGLRAYFNVN  318 (396)
T ss_dssp             EEE---SCHHHHHHHHHHTTCCEEEEEEC--------CCCSCS-------SG---------GGH-----HHHHHHHHHHH
T ss_pred             EEE---CCHHHHHHHHHhhCCCCCEEEEC--------CCCCCC-------CH---------HHH-----HHHHHHHHHHH
Confidence            333   24333221    26789999863        332111       00         011     34457888899


Q ss_pred             HHHHhhhccCCeEEEEecc
Q 016644          220 GARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       220 ~~Ra~EL~pGG~lvl~~~g  238 (385)
                      ..-.+-|+|||+|+++...
T Consensus       319 ~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          319 FAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             HHHHTTEEEEEEEEEEECC
T ss_pred             HHHHHhcCCCcEEEEEECC
Confidence            9999999999999887744

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=95.12  E-value=0.017  Score=54.11  Aligned_cols=33  Identities=3%  Similarity=-0.322  Sum_probs=24.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      .+.+|+|+|||+|..+..++               .. + .+|...|+-.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll---------------~~-~-~~v~~veid~  104 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLF---------------KY-D-THIDFVQADE  104 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHT---------------TS-S-CEEEEECSCH
T ss_pred             CCCEEEEEeCCcCHHHHHHH---------------hC-C-CEEEEEECCH
Confidence            45799999999998776654               11 3 5788888743

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=95.00  E-value=0.13  Score=48.66  Aligned_cols=50  Identities=10%  Similarity=0.022  Sum_probs=33.7

Q ss_pred             cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHH-HHHHHHHHHHHhhhccC-CeEE
Q 016644          156 LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQ-TDLAAFLGARSKEMKRC-GSMF  233 (385)
Q Consensus       156 LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~-~D~~~FL~~Ra~EL~pG-G~lv  233 (385)
                      -++.+.+|+|.|..+.+  |-.+.                            .++++ -++   |..-.+-|+|| |.||
T Consensus       135 ~l~~~~~DlVlsD~apn--sG~~~----------------------------~D~~rs~~L---L~~a~~~LkpG~G~FV  181 (277)
T 3evf_A          135 RLEPVKCDTLLCDIGES--SSSSV----------------------------TEGERTVRV---LDTVEKWLACGVDNFC  181 (277)
T ss_dssp             TSCCCCCSEEEECCCCC--CSCHH----------------------------HHHHHHHHH---HHHHHHHHTTCCSEEE
T ss_pred             hcCCCCccEEEecCccC--cCchH----------------------------HHHHHHHHH---HHHHHHHhCCCCCeEE
Confidence            36788999999998876  32221                            11111 122   66667889999 9999


Q ss_pred             EEecc
Q 016644          234 LVCLG  238 (385)
Q Consensus       234 l~~~g  238 (385)
                      +-.+.
T Consensus       182 ~KVf~  186 (277)
T 3evf_A          182 VKVLA  186 (277)
T ss_dssp             EEESC
T ss_pred             EEecC
Confidence            98876

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=94.97  E-value=0.068  Score=56.96  Aligned_cols=120  Identities=13%  Similarity=0.042  Sum_probs=66.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+|||+|..|+.+..        ..       . -+|+..|+-..-...+-+++...        ..+..+--|+
T Consensus       540 g~~VLDlg~GtG~~sl~aa~--------~g-------a-~~V~aVD~s~~al~~a~~N~~~n--------gl~~~~v~~i  595 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGL--------GG-------A-RSTTTVDMSRTYLEWAERNLRLN--------GLTGRAHRLI  595 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHH--------TT-------C-SEEEEEESCHHHHHHHHHHHHHT--------TCCSTTEEEE
T ss_pred             CCcEEEeeechhHHHHHHHH--------CC-------C-CEEEEEeCCHHHHHHHHHHHHHc--------CCCccceEEE
Confidence            35899999999998887651        11       2 46888998543333332222100        0000011122


Q ss_pred             ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .   ++.++-+ ...+++|+|++.        .|.....+.                 ...  ..+..+|+..++..-.+
T Consensus       596 ~---~D~~~~l~~~~~~fD~Ii~D--------PP~f~~~~~-----------------~~~--~~~~~~~~~~ll~~a~~  645 (703)
T 3v97_A          596 Q---ADCLAWLREANEQFDLIFID--------PPTFSNSKR-----------------MED--AFDVQRDHLALMKDLKR  645 (703)
T ss_dssp             E---SCHHHHHHHCCCCEEEEEEC--------CCSBC--------------------------CCBHHHHHHHHHHHHHH
T ss_pred             e---cCHHHHHHhcCCCccEEEEC--------CccccCCcc-----------------chh--HHHHHHHHHHHHHHHHH
Confidence            2   2433322 245789999863        333211100                 000  01345678888888999


Q ss_pred             hhccCCeEEEEeccC
Q 016644          225 EMKRCGSMFLVCLGR  239 (385)
Q Consensus       225 EL~pGG~lvl~~~g~  239 (385)
                      -|+|||+|++++..+
T Consensus       646 ~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          646 LLRAGGTIMFSNNKR  660 (703)
T ss_dssp             HEEEEEEEEEEECCT
T ss_pred             hcCCCcEEEEEECCc
Confidence            999999999887554

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=94.88  E-value=0.07  Score=52.51  Aligned_cols=117  Identities=8%  Similarity=-0.021  Sum_probs=65.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcC-Ccee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTH-RSYF  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~-~~~f  144 (385)
                      .-+|+|+|||+|..|+.+..        .        .--+|+..|+-..-...+-+++...        .. .. +--|
T Consensus       213 ~~~VLDl~cGtG~~sl~la~--------~--------ga~~V~~vD~s~~al~~A~~N~~~n--------~~-~~~~v~~  267 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAM--------G--------GAMATTSVDLAKRSRALSLAHFEAN--------HL-DMANHQL  267 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHH--------T--------TBSEEEEEESCTTHHHHHHHHHHHT--------TC-CCTTEEE
T ss_pred             CCeEEEEeeccCHHHHHHHH--------C--------CCCEEEEEECCHHHHHHHHHHHHHc--------CC-CccceEE
Confidence            36899999999999988752        1        1137888898655444443332110        00 00 1123


Q ss_pred             eccccCcccccc---C-CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL---F-PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rL---f-P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                      +.+   +..+-+   . ...++|+|++.        .|.....       ++.              ..+..+++..++.
T Consensus       268 ~~~---D~~~~l~~~~~~~~~fD~Ii~D--------PP~~~~~-------~~~--------------~~~~~~~~~~ll~  315 (385)
T 2b78_A          268 VVM---DVFDYFKYARRHHLTYDIIIID--------PPSFARN-------KKE--------------VFSVSKDYHKLIR  315 (385)
T ss_dssp             EES---CHHHHHHHHHHTTCCEEEEEEC--------CCCC------------C--------------CCCHHHHHHHHHH
T ss_pred             EEC---CHHHHHHHHHHhCCCccEEEEC--------CCCCCCC-------hhh--------------HHHHHHHHHHHHH
Confidence            333   433222   1 14589999863        2321100       000              1123456777888


Q ss_pred             HHHhhhccCCeEEEEeccC
Q 016644          221 ARSKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~~g~  239 (385)
                      .-.+-|+|||+++++....
T Consensus       316 ~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          316 QGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             HHHHTEEEEEEEEEEECCT
T ss_pred             HHHHhcCCCcEEEEEeCCC
Confidence            8889999999999887443

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=94.85  E-value=0.039  Score=53.95  Aligned_cols=105  Identities=10%  Similarity=-0.021  Sum_probs=63.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+| |+|..++.+..        ..       |..+|+.-|+........-+.+..           ....++  
T Consensus       173 ~~~VLDlG-G~G~~~~~la~--------~~-------~~~~v~~vDi~~~~l~~a~~~~~~-----------~g~~~v--  223 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALML--------SG-------LPKRIAVLDIDERLTKFIEKAANE-----------IGYEDI--  223 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHH--------HT-------CCSEEEEECSCHHHHHHHHHHHHH-----------HTCCCE--
T ss_pred             CCEEEEEC-CCCHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHHHHH-----------cCCCCE--
Confidence            47899999 99999887642        11       446899999854333333222211           001122  


Q ss_pred             ccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       146 ~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..+.+++.+.|  .+++++|+|+++.-+|+.                                       +...||+.-.
T Consensus       224 ~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~---------------------------------------~~~~~l~~~~  264 (373)
T 2qm3_A          224 EIFTFDLRKPLPDYALHKFDTFITDPPETLE---------------------------------------AIRAFVGRGI  264 (373)
T ss_dssp             EEECCCTTSCCCTTTSSCBSEEEECCCSSHH---------------------------------------HHHHHHHHHH
T ss_pred             EEEEChhhhhchhhccCCccEEEECCCCchH---------------------------------------HHHHHHHHHH
Confidence            22344654433  134789999987544431                                       1256778888


Q ss_pred             hhhccCCeE-EEEecc
Q 016644          224 KEMKRCGSM-FLVCLG  238 (385)
Q Consensus       224 ~EL~pGG~l-vl~~~g  238 (385)
                      +-|+|||++ ++++..
T Consensus       265 ~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          265 ATLKGPRCAGYFGITR  280 (373)
T ss_dssp             HTBCSTTCEEEEEECT
T ss_pred             HHcccCCeEEEEEEec
Confidence            999999965 665543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=94.66  E-value=0.16  Score=44.50  Aligned_cols=79  Identities=13%  Similarity=0.085  Sum_probs=47.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..++.+..        ..       + -+|+..|+-..-...+-+.+...           .. ++ 
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~--------~~-------~-~~v~~vD~~~~~~~~a~~~~~~~-----------~~-~~-   99 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALL--------LG-------A-KEVICVEVDKEAVDVLIENLGEF-----------KG-KF-   99 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH--------TT-------C-SEEEEEESCHHHHHHHHHHTGGG-----------TT-SE-
T ss_pred             CcCEEEEeeCCCCHHHHHHHH--------cC-------C-CEEEEEECCHHHHHHHHHHHHHc-----------CC-CE-
Confidence            347899999999998887652        11       2 36888887443333333333210           01 11 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccC
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQ  176 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~  176 (385)
                       ..+-+++.+  +| +++|+++++-.+||.++
T Consensus       100 -~~~~~d~~~--~~-~~~D~v~~~~p~~~~~~  127 (207)
T 1wy7_A          100 -KVFIGDVSE--FN-SRVDIVIMNPPFGSQRK  127 (207)
T ss_dssp             -EEEESCGGG--CC-CCCSEEEECCCCSSSST
T ss_pred             -EEEECchHH--cC-CCCCEEEEcCCCccccC
Confidence             122335433  24 58999999999888764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=94.62  E-value=0.052  Score=51.74  Aligned_cols=79  Identities=8%  Similarity=-0.066  Sum_probs=49.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+...        .         .+|+.-|+-......+-+.+..             ..++ 
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~--------~---------~~V~aVEid~~li~~a~~~~~~-------------~~~v-   98 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKN--------A---------KKVYVIEIDKSLEPYANKLKEL-------------YNNI-   98 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--------S---------SEEEEEESCGGGHHHHHHHHHH-------------CSSE-
T ss_pred             CcCEEEEECCCchHHHHHHHhc--------C---------CEEEEEECCHHHHHHHHHHhcc-------------CCCe-
Confidence            3468999999999999988732        1         4677777754443333322210             1121 


Q ss_pred             eccccCccccccCCCCcccEEEccccccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS  175 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS  175 (385)
                       ..+-|++..--+|+.++|.++++...||-+
T Consensus        99 -~vi~gD~l~~~~~~~~fD~Iv~NlPy~is~  128 (295)
T 3gru_A           99 -EIIWGDALKVDLNKLDFNKVVANLPYQISS  128 (295)
T ss_dssp             -EEEESCTTTSCGGGSCCSEEEEECCGGGHH
T ss_pred             -EEEECchhhCCcccCCccEEEEeCcccccH
Confidence             123346555446777899999998888854

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=94.28  E-value=0.051  Score=51.17  Aligned_cols=83  Identities=12%  Similarity=0.099  Sum_probs=48.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+...        .         .+|+.-|+-......+-+.+...          ....++ 
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~--------~---------~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~v-   79 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEK--------A---------KKVVACELDPRLVAELHKRVQGT----------PVASKL-   79 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH--------S---------SEEEEEESCHHHHHHHHHHHTTS----------TTGGGE-
T ss_pred             CCCEEEEEcCcccHHHHHHHhh--------C---------CEEEEEECCHHHHHHHHHHHHhc----------CCCCce-
Confidence            3478999999999999988632        1         36777787443333333322210          000111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVP  178 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P  178 (385)
                       ..+-+++..--+|  ++|.++|+...||.+..-
T Consensus        80 -~~~~~D~~~~~~~--~fD~vv~nlpy~~~~~~~  110 (285)
T 1zq9_A           80 -QVLVGDVLKTDLP--FFDTCVANLPYQISSPFV  110 (285)
T ss_dssp             -EEEESCTTTSCCC--CCSEEEEECCGGGHHHHH
T ss_pred             -EEEEcceecccch--hhcEEEEecCcccchHHH
Confidence             1123354432233  789999999999976443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=93.83  E-value=0.069  Score=56.22  Aligned_cols=104  Identities=15%  Similarity=0.039  Sum_probs=58.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEec
Q 016644           31 ANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFS  110 (385)
Q Consensus        31 ~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~n  110 (385)
                      -+....|+++..+++..+.+.-         ...+..+|+|+|||+|+.+...+...-     +..      -.+.||.-
T Consensus       332 vKy~~Ye~AI~~Al~d~~~~~~---------~~~~~~vVldVGaGrGpLv~~al~A~a-----~~~------~~vkVyAV  391 (637)
T 4gqb_A          332 IKYSQYQQAIYKCLLDRVPEEE---------KDTNVQVLMVLGAGRGPLVNASLRAAK-----QAD------RRIKLYAV  391 (637)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGG---------TTTCEEEEEEESCTTSHHHHHHHHHHH-----HTT------CEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHhhhhcc---------ccCCCcEEEEECCCCcHHHHHHHHHHH-----hcC------CCcEEEEE
Confidence            4666777776666655443211         123567899999999999887775441     111      24778876


Q ss_pred             CCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcc
Q 016644          111 DLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSA  168 (385)
Q Consensus       111 DLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss  168 (385)
                      +-  |.-..+.+.+-          +.+..... +..+-|. -+.+-++..+|+++|=
T Consensus       392 Ek--np~A~~a~~~v----------~~N~~~dk-VtVI~gd-~eev~LPEKVDIIVSE  435 (637)
T 4gqb_A          392 EK--NPNAVVTLENW----------QFEEWGSQ-VTVVSSD-MREWVAPEKADIIVSE  435 (637)
T ss_dssp             ES--CHHHHHHHHHH----------HHHTTGGG-EEEEESC-TTTCCCSSCEEEEECC
T ss_pred             EC--CHHHHHHHHHH----------HhccCCCe-EEEEeCc-ceeccCCcccCEEEEE
Confidence            65  32111211111          00111111 2234455 6777777899999983

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=93.45  E-value=0.079  Score=51.10  Aligned_cols=37  Identities=11%  Similarity=0.125  Sum_probs=26.2

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHH
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL  120 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~l  120 (385)
                      ..+|+|+|||+|..|+. ..                 ...+|+..|+-..-...+
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~-----------------~~~~V~~vD~s~~ai~~a  232 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CK-----------------NAKKIYAIDINPHAIELL  232 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TT-----------------TSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEccCccCHHHHh-cc-----------------CCCEEEEEECCHHHHHHH
Confidence            46899999999998887 62                 125789999844333333

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=93.27  E-value=0.075  Score=55.04  Aligned_cols=82  Identities=17%  Similarity=0.269  Sum_probs=50.8

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +++.+|+|+|||.|..|..+.        +.         ..+|.--|+........-.....          ....+--
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la--------~~---------ga~V~giD~~~~~i~~a~~~a~~----------~~~~~~~  117 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLA--------SK---------GATIVGIDFQQENINVCRALAEE----------NPDFAAE  117 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHHT----------STTSEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHH--------hC---------CCEEEEECCCHHHHHHHHHHHHh----------cCCCceE
Confidence            367999999999999888775        21         36788889865433322111100          0000111


Q ss_pred             eeccccCcccccc---CCCCcccEEEcccccccccC
Q 016644          144 FAAGVPGSFYRRL---FPTRSIDFFHSAFSLHWLSQ  176 (385)
Q Consensus       144 f~~~vpgSFy~rL---fP~~Svd~~~Ss~alHWLS~  176 (385)
                      |..+   + .+.|   ++++++|+|.|.-.||++.+
T Consensus       118 ~~~~---~-~~~~~~~~~~~~fD~v~~~e~~ehv~~  149 (569)
T 4azs_A          118 FRVG---R-IEEVIAALEEGEFDLAIGLSVFHHIVH  149 (569)
T ss_dssp             EEEC---C-HHHHHHHCCTTSCSEEEEESCHHHHHH
T ss_pred             EEEC---C-HHHHhhhccCCCccEEEECcchhcCCC
Confidence            3333   2 2343   56889999999999999865

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=93.25  E-value=0.12  Score=48.80  Aligned_cols=42  Identities=14%  Similarity=0.054  Sum_probs=29.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhc
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQL  123 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~  123 (385)
                      --+|+|+|||+|+.|+.+..        +        ...+|+..|+-..-+..+-++
T Consensus       126 g~~VlD~~aG~G~~~i~~a~--------~--------g~~~V~avD~np~a~~~~~~N  167 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIAV--------Y--------GKAKVIAIEKDPYTFKFLVEN  167 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHHH--------H--------TCCEEEEECCCHHHHHHHHHH
T ss_pred             CCEEEEecCcCcHHHHHHHH--------h--------cCCeEEEEECCHHHHHHHHHH
Confidence            47899999999999998752        1        125799999854444444443

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=93.24  E-value=0.18  Score=46.89  Aligned_cols=21  Identities=24%  Similarity=0.312  Sum_probs=18.0

Q ss_pred             CceEEeeeCCCCCcchHHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIVD   85 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~   85 (385)
                      +..+|+|+|||+|..|..+..
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~   49 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLT   49 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTT
T ss_pred             CcCEEEEEcccccHHHHHHHH
Confidence            346899999999999998863

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=93.24  E-value=0.51  Score=51.02  Aligned_cols=128  Identities=8%  Similarity=-0.037  Sum_probs=68.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHH--HhcCCC--CCCchhHhhhcCcC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTL--FQLLPP--IGSSMEECLASDTH  140 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~l--F~~l~~--~~~~~~~~~~~~~~  140 (385)
                      ...+|+|.|||+|...+.+...+        .    .....+++..|+-..-....  -.++..  ..         ...
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l--------~----ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Ll---------hGi  379 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGF--------N----NVMPRQIWANDIETLFLELLSIRLGLLFPQLV---------SSN  379 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTS--------T----TCCGGGEEEECSCGGGHHHHHHHHHTTSTTTC---------BTT
T ss_pred             CCCEEEECCCCccHHHHHHHHHh--------c----ccCCCeEEEEECCHHHHHHHHHHHHHHHhhhh---------cCC
Confidence            35799999999999776654222        1    01236889999854333322  112211  00         000


Q ss_pred             CceeeccccCcccc-ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHH------
Q 016644          141 RSYFAAGVPGSFYR-RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQT------  213 (385)
Q Consensus       141 ~~~f~~~vpgSFy~-rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~------  213 (385)
                      ...  ....++|.. ...+...+|+|+++         |+....              ...+...+.|...+..      
T Consensus       380 ~~~--~I~~dD~L~~~~~~~~kFDVVIgN---------PPYg~~--------------~~~~~e~kd~~~r~~~g~p~~p  434 (878)
T 3s1s_A          380 NAP--TITGEDVCSLNPEDFANVSVVVMN---------PPYVSG--------------VTDPAIKRKFAHKIIQLTGNRP  434 (878)
T ss_dssp             BCC--EEECCCGGGCCGGGGTTEEEEEEC---------CBCCSS--------------CCCHHHHHHHHHHHHHHHSSCC
T ss_pred             Ccc--eEEecchhcccccccCCCCEEEEC---------CCcccc--------------ccchhhhhhHHHHhhhhccccc
Confidence            110  112344443 23456788998886         333210              0112222333332222      


Q ss_pred             --------HHHHHHHHHHhhhccCCeEEEEecc
Q 016644          214 --------DLAAFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       214 --------D~~~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                              -...|+..-.+-|+|||++++.++.
T Consensus       435 ~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          435 QTLFGQIGVEALFLELVTELVQDGTVISAIMPK  467 (878)
T ss_dssp             SSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred             cccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence                    2556888899999999999999864

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=93.13  E-value=0.23  Score=49.71  Aligned_cols=23  Identities=22%  Similarity=0.135  Sum_probs=18.9

Q ss_pred             HHHHHHHHhhhccCCeEEEEecc
Q 016644          216 AAFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       216 ~~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                      ..||..-.+-|+|||+++++++.
T Consensus       287 ~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          287 LNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHHHHHHhccCCEEEEEECC
Confidence            36777788899999999988853

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=92.93  E-value=0.64  Score=47.93  Aligned_cols=145  Identities=14%  Similarity=0.167  Sum_probs=68.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      +.+|+|.+||||...+.+...+.+.-..............+++-.|+-..-....-.++.         +.+- ..++  
T Consensus       245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~---------l~gi-~~~i--  312 (544)
T 3khk_A          245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMV---------IRGI-DFNF--  312 (544)
T ss_dssp             SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHH---------HTTC-CCBC--
T ss_pred             CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHH---------HhCC-Cccc--
Confidence            459999999999877766554432211100000000014788888883222222111111         0000 0111  


Q ss_pred             ccccCc-cccccCCCCcccEEEcc--ccc-ccccCCchhhhcccccccCCCc---eEEcCCCHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGS-FYRRLFPTRSIDFFHSA--FSL-HWLSQVPESALDKRSMAYNKGK---VYIHGANEHTANAYKKQFQTDLAAF  218 (385)
Q Consensus       146 ~~vpgS-Fy~rLfP~~Svd~~~Ss--~al-HWLS~~P~~l~~~~~~~~nkg~---i~~~~~~~~v~~ay~~q~~~D~~~F  218 (385)
                      ..+-|+ +....++...+|+|+++  +.. .|-...   +...  +.+.-|.   ...  ..++..+       .|+ .|
T Consensus       313 ~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~---~~~d--~r~~~g~~~~~~~--~~~~~~~-------~~~-~F  377 (544)
T 3khk_A          313 GKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEK---LADD--PRWTINTNGEKRI--LTPPTGN-------ANF-AW  377 (544)
T ss_dssp             CSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGG---GTTC--GGGEECCC--CEE--CCCCTTC-------THH-HH
T ss_pred             ceeccchhcCcccccccccEEEECCCcCCccccchh---hhhh--hhhhcCccccccc--ccCCCcc-------hhH-HH
Confidence            012233 44555778899999996  332 354321   1110  0000000   000  0011001       122 48


Q ss_pred             HHHHHhhhccCCeEEEEec
Q 016644          219 LGARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       219 L~~Ra~EL~pGG~lvl~~~  237 (385)
                      |.+-.+-|+|||+++++++
T Consensus       378 l~~~l~~Lk~gGr~aiVlP  396 (544)
T 3khk_A          378 MLHMLYHLAPTGSMALLLA  396 (544)
T ss_dssp             HHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHhccCceEEEEec
Confidence            8888999999999998884

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=92.92  E-value=0.045  Score=53.91  Aligned_cols=25  Identities=4%  Similarity=-0.019  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhhhccCCeEEEEecc
Q 016644          214 DLAAFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       214 D~~~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                      ++..+|..-.+.|+|||+++++...
T Consensus       317 ~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          317 GYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            5666777788999999999988743

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=92.79  E-value=0.19  Score=50.26  Aligned_cols=32  Identities=16%  Similarity=0.131  Sum_probs=24.3

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      .-+|+|+|||+|..|+.+...                 ..+|+..|+-.
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~-----------------~~~V~gvD~s~  322 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKR-----------------GFNVKGFDSNE  322 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHT-----------------TCEEEEEESCH
T ss_pred             CCEEEEeeccchHHHHHHHHc-----------------CCEEEEEECCH
Confidence            468999999999999877521                 14788888744

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=92.76  E-value=0.91  Score=43.20  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=17.6

Q ss_pred             CceEEeeeCCCCCcchHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~   84 (385)
                      +-.+|+|||||.|..|.-++
T Consensus        81 ~g~~vlDLGaaPGgWsqva~  100 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAA  100 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHH
T ss_pred             CCCEEEEcCCCCCHHHHHHH
Confidence            45899999999999998776

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=92.67  E-value=0.41  Score=45.21  Aligned_cols=19  Identities=32%  Similarity=0.580  Sum_probs=16.6

Q ss_pred             ceEEeeeCCCCCcchHHHH
Q 016644           66 PFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~   84 (385)
                      ..+|+|||||.|..|.-++
T Consensus        91 ~~~VLDLGaAPGGWsQvAa  109 (282)
T 3gcz_A           91 TGIVVDLGCGRGGWSYYAA  109 (282)
T ss_dssp             CEEEEEETCTTCHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHH
Confidence            4689999999999988765

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=92.54  E-value=0.075  Score=48.78  Aligned_cols=77  Identities=14%  Similarity=0.094  Sum_probs=43.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+.+.        .         .+|+.-|+-......+-+.+..             ..++ 
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~--------~---------~~v~~vD~~~~~~~~a~~~~~~-------------~~~v-   78 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQR--------C---------NFVTAIEIDHKLCKTTENKLVD-------------HDNF-   78 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--------S---------SEEEEECSCHHHHHHHHHHTTT-------------CCSE-
T ss_pred             CCCEEEEEeCCchHHHHHHHHc--------C---------CeEEEEECCHHHHHHHHHhhcc-------------CCCe-
Confidence            3468999999999999887632        1         4677888754333333333321             0111 


Q ss_pred             eccccCccccccCCC-CcccEEEcccccccc
Q 016644          145 AAGVPGSFYRRLFPT-RSIDFFHSAFSLHWL  174 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~-~Svd~~~Ss~alHWL  174 (385)
                       ..+-+++.+--+++ .++ .++|+...+|-
T Consensus        79 -~~~~~D~~~~~~~~~~~~-~vv~nlPy~~~  107 (244)
T 1qam_A           79 -QVLNKDILQFKFPKNQSY-KIFGNIPYNIS  107 (244)
T ss_dssp             -EEECCCGGGCCCCSSCCC-EEEEECCGGGH
T ss_pred             -EEEEChHHhCCcccCCCe-EEEEeCCcccC
Confidence             12334654433553 344 57777666653

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=92.50  E-value=0.18  Score=52.12  Aligned_cols=132  Identities=18%  Similarity=0.156  Sum_probs=69.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC--CCCCCchhHhhhcCcCCc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL--PPIGSSMEECLASDTHRS  142 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l--~~~~~~~~~~~~~~~~~~  142 (385)
                      ...+|+|.+||||...+.+...+.            .....+++-.|+-..-+...-.++  ...           ...+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~------------~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi-----------~~~~  277 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSR------------QPQTVVYFGQELNTSTYNLARMNMILHGV-----------PIEN  277 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCS------------CTTTCEEEEEESCHHHHHHHHHHHHHTTC-----------CGGG
T ss_pred             CCCEEeecccchhHHHHHHHHHHH------------hccCceEEEEECcHHHHHHHHHHHHHcCC-----------CcCc
Confidence            457999999999998777764331            113578898888332222222211  110           0001


Q ss_pred             eeeccccCccccc---cCCCCcccEEEcc--cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHH
Q 016644          143 YFAAGVPGSFYRR---LFPTRSIDFFHSA--FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAA  217 (385)
Q Consensus       143 ~f~~~vpgSFy~r---LfP~~Svd~~~Ss--~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~  217 (385)
                      .  ..+-|+++..   .++...+|+|+++  +...|-.. .....+.....+  |.+ ...+            ..|+ .
T Consensus       278 ~--~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~-~~~~~d~rf~~~--G~~-~~~s------------~~~~-~  338 (542)
T 3lkd_A          278 Q--FLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSAS-SGFMDDPRFSPF--GKL-APKS------------KADF-A  338 (542)
T ss_dssp             E--EEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCC-GGGGGSTTTGGG--SSC-CCTT------------CCHH-H
T ss_pred             c--ceEecceecccccccccccccEEEecCCcCCccccc-hhhhhhhhhhhh--hhc-CCCc------------hhhH-H
Confidence            1  1122344433   3567899999998  55566322 111111110001  100 0000            0123 4


Q ss_pred             HHHHHHhhhc-cCCeEEEEecc
Q 016644          218 FLGARSKEMK-RCGSMFLVCLG  238 (385)
Q Consensus       218 FL~~Ra~EL~-pGG~lvl~~~g  238 (385)
                      |+..-.+-|+ |||+++++++.
T Consensus       339 Fl~~~l~~Lk~~gGr~a~VlP~  360 (542)
T 3lkd_A          339 FLLHGYYHLKQDNGVMAIVLPH  360 (542)
T ss_dssp             HHHHHHHTBCTTTCEEEEEEET
T ss_pred             HHHHHHHHhCCCceeEEEEecc
Confidence            8888889999 99999988854

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=92.26  E-value=0.11  Score=49.11  Aligned_cols=80  Identities=13%  Similarity=0.097  Sum_probs=45.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+..        +         ..+|+.-|+-......+-+.+..           ....++ 
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~--------~---------~~~v~~vDi~~~~~~~a~~~~~~-----------~~~~~v-   92 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLP--------L---------AKKVITIDIDSRMISEVKKRCLY-----------EGYNNL-   92 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTT--------T---------SSEEEEECSCHHHHHHHHHHHHH-----------TTCCCE-
T ss_pred             CcCEEEEEcCcCcHHHHHHHh--------c---------CCEEEEEECCHHHHHHHHHHHHH-----------cCCCce-
Confidence            346899999999999988752        1         14778888743332222222110           001121 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccC
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQ  176 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~  176 (385)
                       ..+-+++..  +|..++|+|+++...||.+.
T Consensus        93 -~~~~~D~~~--~~~~~~D~Vv~n~py~~~~~  121 (299)
T 2h1r_A           93 -EVYEGDAIK--TVFPKFDVCTANIPYKISSP  121 (299)
T ss_dssp             -EC----CCS--SCCCCCSEEEEECCGGGHHH
T ss_pred             -EEEECchhh--CCcccCCEEEEcCCcccccH
Confidence             122335443  23458999999999998653

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=92.23  E-value=0.062  Score=50.59  Aligned_cols=80  Identities=13%  Similarity=0.078  Sum_probs=48.0

Q ss_pred             hhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHH
Q 016644           15 LEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKR   94 (385)
Q Consensus        15 ~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~   94 (385)
                      +++.+.+.|=.-..+|-+|-..+..++..+...+.       .      .+. +|+|+|||+|..|..+....       
T Consensus        10 ~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~-------~------~~~-~VLEIG~G~G~lt~~L~~~~-------   68 (271)
T 3fut_A           10 VRALLERHGLFADKRFGQNFLVSEAHLRRIVEAAR-------P------FTG-PVFEVGPGLGALTRALLEAG-------   68 (271)
T ss_dssp             HHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHC-------C------CCS-CEEEECCTTSHHHHHHHHTT-------
T ss_pred             HHHHHHhcCCCccccCCccccCCHHHHHHHHHhcC-------C------CCC-eEEEEeCchHHHHHHHHHcC-------
Confidence            44555554444446777777666666555443332       1      234 89999999999999887321       


Q ss_pred             HHhcCCCCCceeEEecCCCCCchHHHHhcCC
Q 016644           95 YEASGYEPPEFSAFFSDLPSNDFNTLFQLLP  125 (385)
Q Consensus        95 ~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~  125 (385)
                                .+|+.-|+-......+-+.++
T Consensus        69 ----------~~V~avEid~~~~~~l~~~~~   89 (271)
T 3fut_A           69 ----------AEVTAIEKDLRLRPVLEETLS   89 (271)
T ss_dssp             ----------CCEEEEESCGGGHHHHHHHTT
T ss_pred             ----------CEEEEEECCHHHHHHHHHhcC
Confidence                      356666765544444444443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=88.88  E-value=0.4  Score=45.09  Aligned_cols=21  Identities=14%  Similarity=0.105  Sum_probs=18.2

Q ss_pred             CceEEeeeCCCCCcchHHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIVD   85 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~   85 (385)
                      +..+|+|+|||+|..|..+..
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~   62 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIA   62 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHH
T ss_pred             CcCEEEEEccccHHHHHHHHH
Confidence            347899999999999998874

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=88.72  E-value=0.95  Score=44.73  Aligned_cols=76  Identities=14%  Similarity=0.098  Sum_probs=44.5

Q ss_pred             CCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 016644           24 GNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPP  103 (385)
Q Consensus        24 g~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p  103 (385)
                      |.....|+-+...=+.....+...+.+.   .        .+..+|+|++||+|..++.+.+..        .      .
T Consensus        22 ~~~~~Ffn~~~~~nR~l~~~~~~~~~~~---~--------~~g~~VLDlfaGtG~~sl~aa~~~--------~------g   76 (392)
T 3axs_A           22 SDMPVFYNPRMRVNRDLAVLGLEYLCKK---L--------GRPVKVADPLSASGIRAIRFLLET--------S------C   76 (392)
T ss_dssp             TTCCSSCCGGGHHHHHHHHHHHHHHHHH---H--------CSCEEEEESSCTTSHHHHHHHHHC--------S------C
T ss_pred             CCCCEEEcCCcHHHHHHHHHHHHHHhhc---c--------CCCCEEEECCCcccHHHHHHHHhC--------C------C
Confidence            3355788666555554443333333210   0        124789999999999999887422        0      1


Q ss_pred             ceeEEecCCCCCchHHHHhcC
Q 016644          104 EFSAFFSDLPSNDFNTLFQLL  124 (385)
Q Consensus       104 ~~qv~~nDLp~NDFn~lF~~l  124 (385)
                      --+|+.+|+-..-...+-+++
T Consensus        77 a~~V~avDi~~~av~~~~~N~   97 (392)
T 3axs_A           77 VEKAYANDISSKAIEIMKENF   97 (392)
T ss_dssp             EEEEEEECSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHH
Confidence            257899998544444444433

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=87.43  E-value=0.38  Score=43.73  Aligned_cols=20  Identities=15%  Similarity=0.154  Sum_probs=17.7

Q ss_pred             CceEEeeeCCCCCcchHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~   84 (385)
                      +..+|+|+|||+|..|..+.
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~   48 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLA   48 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHH
T ss_pred             CCCEEEEEeCCCCHHHHHHH
Confidence            45789999999999999886

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=87.18  E-value=2.2  Score=42.03  Aligned_cols=20  Identities=15%  Similarity=0.120  Sum_probs=16.3

Q ss_pred             ceEEeeeCCCCCcchHHHHH
Q 016644           66 PFALADLGCSCGNNTLYIVD   85 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~   85 (385)
                      ..+|+|.|||||...+....
T Consensus       202 ~~~vlDp~CGSGt~~ieaa~  221 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAAL  221 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHH
Confidence            46799999999998776653

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=87.14  E-value=0.39  Score=45.75  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=26.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCch
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDF  117 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDF  117 (385)
                      ..+|+|+|||+|..|+.+.+..               |..+|+.-|+-....
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~---------------~~~~VigvD~d~~al   63 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHC---------------PGCRIIGIDVDSEVL   63 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHC---------------TTCEEEEEESCHHHH
T ss_pred             CCEEEEEeCCcCHHHHHHHHHC---------------CCCEEEEEECCHHHH
Confidence            4689999999999999887432               345677777644333

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=87.03  E-value=0.71  Score=42.65  Aligned_cols=16  Identities=19%  Similarity=0.125  Sum_probs=14.6

Q ss_pred             ceEEeeeCCCCCcchH
Q 016644           66 PFALADLGCSCGNNTL   81 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl   81 (385)
                      ..+|+|+|||+|..|.
T Consensus        22 ~~~VLEIG~G~G~lt~   37 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE   37 (252)
T ss_dssp             TCCEEEECCTTTTTHH
T ss_pred             cCEEEEECCCCcHHHH
Confidence            4689999999999999

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=86.96  E-value=1.4  Score=41.82  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhc
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQL  123 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~  123 (385)
                      ..+|+|+|||+|.-|+.+...+        .      +.-+|+.+|+-..-...+-++
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~--------~------~~g~V~a~D~~~~~l~~~~~n  146 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALL--------K------NQGKIFAFDLDAKRLASMATL  146 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHH--------T------TCSEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEeCCChhHHHHHHHHHh--------C------CCCEEEEEeCCHHHHHHHHHH
Confidence            4689999999999999886432        0      346889999855444444443

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=86.28  E-value=1.8  Score=42.41  Aligned_cols=20  Identities=20%  Similarity=0.164  Sum_probs=16.6

Q ss_pred             ceEEeeeCCCCCcchHHHHH
Q 016644           66 PFALADLGCSCGNNTLYIVD   85 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~   85 (385)
                      ..+|+|.|||||...+.+..
T Consensus       196 ~~~vlDp~CGSGt~lieaa~  215 (385)
T 3ldu_A          196 GRVLVDPMCGSGTILIEAAM  215 (385)
T ss_dssp             TSCEEETTCTTCHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHH
Confidence            46899999999998887654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=85.05  E-value=1.7  Score=44.58  Aligned_cols=21  Identities=14%  Similarity=0.196  Sum_probs=18.1

Q ss_pred             HHHHHHHhhhccCCeEEEEec
Q 016644          217 AFLGARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       217 ~FL~~Ra~EL~pGG~lvl~~~  237 (385)
                      .||..-.+-|+|||+++++++
T Consensus       293 ~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          293 CFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEec
Confidence            578888889999999999875

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=84.93  E-value=3.7  Score=40.21  Aligned_cols=20  Identities=15%  Similarity=0.195  Sum_probs=16.3

Q ss_pred             ceEEeeeCCCCCcchHHHHH
Q 016644           66 PFALADLGCSCGNNTLYIVD   85 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~   85 (385)
                      ...|+|.+||||...+....
T Consensus       195 ~~~llDp~CGSGt~lIEAa~  214 (384)
T 3ldg_A          195 DKPFVDPTCGSGTFCIEAAM  214 (384)
T ss_dssp             TSCEEETTCTTSHHHHHHHH
T ss_pred             CCeEEEeCCcCCHHHHHHHH
Confidence            36799999999988876653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=84.65  E-value=0.41  Score=44.13  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=17.4

Q ss_pred             CceEEeeeCCCCCcchHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~   84 (385)
                      +..+|+|+|||+|..|..+.
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~   50 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLL   50 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHT
T ss_pred             CcCEEEEEcCchHHHHHHHH
Confidence            34689999999999998886

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=80.58  E-value=2.1  Score=40.08  Aligned_cols=28  Identities=14%  Similarity=0.166  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHhhhccCCeEEEEec
Q 016644          210 QFQTDLAAFLGARSKEMKRCGSMFLVCL  237 (385)
Q Consensus       210 q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  237 (385)
                      .+-.++..++..-.+-|+|||.|++...
T Consensus        71 ~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           71 AFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             HHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            3445566777888899999999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	385
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	1e-116

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  341 bits (875), Expect = e-116
 Identities = 130/376 (34%), Positives = 179/376 (47%), Gaps = 28/376 (7%)

Query: 14  KLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLG 73
            +  +L MKGG GE SYA NS  Q         +    +  +   +  +     A+ADLG
Sbjct: 2   DVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTT--RLAIADLG 59

Query: 74  CSCGNNTLYIVDVIIKHISKRYEASGYEP-PEFSAFFSDLPSNDFNTLFQLLPPIGSSME 132
           CS G N L+ V  +IK + +  +  G E  PE+  F +DLP NDFN +F+ LP       
Sbjct: 60  CSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI------ 113

Query: 133 ECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKG 192
               +D     F  GVPGSFY RLFP  ++ F HS++SL WLSQVP        +  NKG
Sbjct: 114 ---ENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIG------IESNKG 164

Query: 193 KVYIHGA-NEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPG 251
            +Y+     +   NAY KQFQ D A FL  R++E+   G M L  LGR S D        
Sbjct: 165 NIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTEC-- 222

Query: 252 ILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFK- 310
            L       A N +V EGLI  EK D FNIP Y  S  E +  +   GSF+I+ +E  + 
Sbjct: 223 CLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEI 282

Query: 311 --GGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERR-GSCYAK 367
                           E G  +A   R+VA  L+  H G+ + E++F R +       +K
Sbjct: 283 YWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSK 342

Query: 368 ELIEQLQFFHIVASLS 383
           E  +   F +++ SL 
Sbjct: 343 EKTK---FINVIVSLI 355

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	385
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.21
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.2
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.14
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.12
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.12
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.09
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.09
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.05
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.05
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.03
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.99
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.97
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.94
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.9
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.87
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.85
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.8
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.77
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.76
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.72
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.72
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.7
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.63
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.63
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.58
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.54
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.52
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.49
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.32
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.27
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.25
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.24
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.22
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.17
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.08
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.95
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.93
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.92
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.89
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.86
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.86
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.85
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.84
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.71
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.69
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.68
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.57
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.55
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.54
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.53
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.37
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.17
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.91
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.83
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.69
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	96.44
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.02
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	95.94
d2h00a1	250	Methyltransferase 10 domain containing protein MET	95.19
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	94.49
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	94.49
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	93.53
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	93.3
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	92.96
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	89.58
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	88.44
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	87.57
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	87.18
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	86.43
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	83.57
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	82.86
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	82.15
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	81.17
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	81.05

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=8.4e-102  Score=763.51  Aligned_cols=350  Identities=37%  Similarity=0.562  Sum_probs=315.2

Q ss_pred             cchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHH
Q 016644           13 RKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHIS   92 (385)
Q Consensus        13 ~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~   92 (385)
                      |+|+++|||+||+|++||++||.+|++++..++|+|++||.++....  ..+++++|||||||+|+||+.+|++||++|+
T Consensus         1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~--~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~   78 (359)
T d1m6ex_           1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGD--TVTTRLAIADLGCSSGPNALFAVTELIKTVE   78 (359)
T ss_dssp             CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSS--SSSSEECCEEESCCSSTTTTTGGGTTHHHHH
T ss_pred             CCccEeeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCceEEEEeCCCCCccHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999986522  1246799999999999999999999999999


Q ss_pred             HHHHhcCC-CCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEccccc
Q 016644           93 KRYEASGY-EPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSL  171 (385)
Q Consensus        93 ~~~~~~~~-~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~al  171 (385)
                      ++|.+.+. ++|+|||||||||+||||+||++|+...         +..++||++|||||||+||||++|+||+||++||
T Consensus        79 ~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~---------~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~al  149 (359)
T d1m6ex_          79 ELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---------DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSL  149 (359)
T ss_dssp             HHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---------SCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCT
T ss_pred             HHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc---------cCCCCeEEEecCCchhhhcCCCCceEEeeehhhh
Confidence            99987664 5789999999999999999999998642         2357899999999999999999999999999999


Q ss_pred             ccccCCchhhhcccccccCCCceEEcCCCHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCC
Q 016644          172 HWLSQVPESALDKRSMAYNKGKVYIHGANEH-TANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGP  250 (385)
Q Consensus       172 HWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~  250 (385)
                      ||||++|+.+.+      |||+||+.+++|+ |.+||++||++||.+||++||+||+|||+||++++||++.++...+ .
T Consensus       150 HWLS~vP~~l~~------n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~-~  222 (359)
T d1m6ex_         150 MWLSQVPIGIES------NKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTE-C  222 (359)
T ss_dssp             TBCSSCCSCCCC------CTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTT-T
T ss_pred             hhhhcCCccccC------CCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCCc-c
Confidence            999999998854      9999999887766 9999999999999999999999999999999999999887766532 2


Q ss_pred             ccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCC-CCc--ccCCCchhhhH
Q 016644          251 GILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGS-PLV--VKQPDDAAEVG  327 (385)
Q Consensus       251 ~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~-~~~--~~~~~d~~~~~  327 (385)
                      +..| ++|.++|++||.||+|++||+|+||+|+|+||++||+++|+++|+|+|+++|+++.++ +..  .....|..++|
T Consensus       223 ~~~~-~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~  301 (359)
T d1m6ex_         223 CLIW-QLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEG  301 (359)
T ss_dssp             STTT-HHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTT
T ss_pred             chHH-HHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeeecccccccccccccccHHHHH
Confidence            3444 8999999999999999999999999999999999999999999999999999998443 221  11234566889


Q ss_pred             HHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhchhHhhhcccceEEEEEEEe
Q 016644          328 QALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLS  383 (385)
Q Consensus       328 ~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~l~  383 (385)
                      +.+++++|||+||+|.+|||++|+|+||+||+++++++  ++.++++|++++++|+
T Consensus       302 ~~~a~~~RA~~e~~l~~hfg~~i~D~lF~r~~~~v~~~--~~~~~~~~~~~~~sL~  355 (359)
T d1m6ex_         302 YNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIER--MSKEKTKFINVIVSLI  355 (359)
T ss_dssp             THHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HHSSCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHhh--HhhcCCceEEEEEEEE
Confidence            99999999999999999999999999999999999999  4578999999999986

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.1e-10  Score=106.32  Aligned_cols=189  Identities=12%  Similarity=0.175  Sum_probs=106.9

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEe
Q 016644           30 YANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFF  109 (385)
Q Consensus        30 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~  109 (385)
                      |-+||...+.....+.+.+.+.+..+.     ..++.++|+|+|||+|..|..++..+.    .++     +...+.+..
T Consensus        10 ~~~~s~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~~VLDiGcG~G~~~~~ll~~l~----~~~-----~~~~~~~~~   75 (280)
T d1jqea_          10 FLNHSTEHQCMQEFMDKKLPGIIGRIG-----DTKSEIKILSIGGGAGEIDLQILSKVQ----AQY-----PGVCINNEV   75 (280)
T ss_dssp             HHHTBSHHHHHHHHHHHTHHHHTTTTT-----TTCSEEEEEEETCTTSHHHHHHHHHHH----HHS-----TTCEEEEEE
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHhc-----cCCCCCeEEEEcCCCCHHHHHHHHHhh----hhc-----cCCceEEEE
Confidence            455555554444444444444333332     124568999999999998888875542    333     124467777


Q ss_pred             cCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e-eccccC-cc---ccccCCCCcccEEEcccccccccCCchhhhc
Q 016644          110 SDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F-AAGVPG-SF---YRRLFPTRSIDFFHSAFSLHWLSQVPESALD  183 (385)
Q Consensus       110 nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f-~~~vpg-SF---y~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~  183 (385)
                      -|.-.+.....-+.+....          ....+ + ....+. +|   ...-++++++|+|+|+.+|||+.+.+..   
T Consensus        76 vD~s~~~l~~a~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~---  142 (280)
T d1jqea_          76 VEPSAEQIAKYKELVAKIS----------NLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPAT---  142 (280)
T ss_dssp             ECCCHHHHHHHHHHHTTCC----------SCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHH---
T ss_pred             EeCcHHHHHHHHHHHhhcc----------ccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHH---
Confidence            8864444333333222110          00111 0 000111 11   1335789999999999999999764433   


Q ss_pred             ccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHH
Q 016644          184 KRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWN  263 (385)
Q Consensus       184 ~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~  263 (385)
                                                         |+.-.+-|+|||.|+++.....           ..    ....|.
T Consensus       143 -----------------------------------l~~l~~~LkpgG~l~i~~~~~~-----------~~----~~~l~~  172 (280)
T d1jqea_         143 -----------------------------------LKFFHSLLGTNAKMLIIVVSGS-----------SG----WDKLWK  172 (280)
T ss_dssp             -----------------------------------HHHHHHTEEEEEEEEEEEECTT-----------SH----HHHHHH
T ss_pred             -----------------------------------HHHHHhhCCCCCEEEEEEecCc-----------ch----HHHHHH
Confidence                                               3567899999999999876542           11    233344


Q ss_pred             HHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          264 DLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       264 ~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      .+...-  .    +.  ....+.+.+++...+++.| |...
T Consensus       173 ~~~~~~--~----~~--~~~~~~~~~~~~~~L~~~G-~~~~  204 (280)
T d1jqea_         173 KYGSRF--P----QD--DLCQYITSDDLTQMLDNLG-LKYE  204 (280)
T ss_dssp             HHGGGS--C----CC--TTSCCCCHHHHHHHHHHHT-CCEE
T ss_pred             HHHHhc--C----CC--cccccCCHHHHHHHHHHCC-CceE
Confidence            432211  0    11  1223567899999999999 7543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.20  E-value=2.8e-11  Score=108.55  Aligned_cols=153  Identities=14%  Similarity=0.196  Sum_probs=95.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..|+.+..        +.         -+|+..|+-.+.-...-+.+..           ...+++ 
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~--------~~---------~~v~gvD~s~~~i~~A~~~~~~-----------~~~~~i~   66 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAP--------FV---------KKVVAFDLTEDILKVARAFIEG-----------NGHQQVE   66 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGG--------GS---------SEEEEEESCHHHHHHHHHHHHH-----------TTCCSEE
T ss_pred             CcCEEEEecccCcHHHHHHHH--------hC---------CEEEEEECCHHHHhhhhhcccc-----------ccccccc
Confidence            458999999999999877641        11         3677788855433322111110           011232 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      |..+   +. +.+ ||++++|+|+|..++||+.+..                                      .+|+.-
T Consensus        67 ~~~~---d~-~~l~~~~~~fD~v~~~~~l~~~~d~~--------------------------------------~~l~~~  104 (231)
T d1vl5a_          67 YVQG---DA-EQMPFTDERFHIVTCRIAAHHFPNPA--------------------------------------SFVSEA  104 (231)
T ss_dssp             EEEC---CC--CCCSCTTCEEEEEEESCGGGCSCHH--------------------------------------HHHHHH
T ss_pred             cccc---cc-ccccccccccccccccccccccCCHH--------------------------------------HHHHHH
Confidence            3333   53 445 8999999999999999996633                                      334667


Q ss_pred             HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      ++-|+|||+|++........         ..+ +.+.+.+......            ....+.+.+++.+.+++.| |+
T Consensus       105 ~r~LkpgG~l~i~~~~~~~~---------~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~aG-f~  161 (231)
T d1vl5a_         105 YRVLKKGGQLLLVDNSAPEN---------DAF-DVFYNYVEKERDY------------SHHRAWKKSDWLKMLEEAG-FE  161 (231)
T ss_dssp             HHHEEEEEEEEEEEEEBCSS---------HHH-HHHHHHHHHHHCT------------TCCCCCBHHHHHHHHHHHT-CE
T ss_pred             HHhcCCCcEEEEEeCCCCCC---------HHH-HHHHHHHHhhccc------------CcccCCCHHHHHHHHHHCC-CE
Confidence            89999999999977654310         111 2222222211110            1123557899999999999 99


Q ss_pred             ecEEEEEe
Q 016644          303 INKLEVFK  310 (385)
Q Consensus       303 i~~le~~~  310 (385)
                      +++++.+.
T Consensus       162 ~~~~~~~~  169 (231)
T d1vl5a_         162 LEELHCFH  169 (231)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            98888775

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.14  E-value=7.2e-11  Score=106.18  Aligned_cols=165  Identities=16%  Similarity=0.140  Sum_probs=102.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|+.+....             ..|..+|+.-|+...+....-+.+...          .....+ 
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~-------------~~~~~~v~giD~S~~ml~~A~~~~~~~----------~~~~~~-   94 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQPMVERCRQHIAAY----------HSEIPV-   94 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTC-------------CCSSCEEEEECSCHHHHHHHHHHHHTS----------CCSSCE-
T ss_pred             CCCEEEEeccchhhHHHHHHHhh-------------cCCCCceEEeCCCHHHHHHHHHHhHhh----------cccchh-
Confidence            34689999999999998876321             236789999999776655543333211          001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ...-+++. . +|....|+++|++++||++..                                    |...+|+.-.+
T Consensus        95 -~~~~~d~~-~-~~~~~~d~i~~~~~l~~~~~~------------------------------------d~~~~l~~i~~  135 (225)
T d1im8a_          95 -EILCNDIR-H-VEIKNASMVILNFTLQFLPPE------------------------------------DRIALLTKIYE  135 (225)
T ss_dssp             -EEECSCTT-T-CCCCSEEEEEEESCGGGSCGG------------------------------------GHHHHHHHHHH
T ss_pred             -hhccchhh-c-cccccceeeEEeeeccccChh------------------------------------hHHHHHHHHHH
Confidence             11222322 2 467788999999999998531                                    24456677899


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccc----cccccccCCHHHHHHHHHhcCc
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDS----FNIPVYASSLQEFKEVVEANGS  300 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~----f~~P~y~ps~~Ev~~~le~~gs  300 (385)
                      -|+|||+|++.-......         ......+...+..+....-.++.+...    ...-.+..|.+|+...+++.| 
T Consensus       136 ~LkpgG~li~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aG-  205 (225)
T d1im8a_         136 GLNPNGVLVLSEKFRFED---------TKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVG-  205 (225)
T ss_dssp             HEEEEEEEEEEEECCCSS---------HHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHT-
T ss_pred             hCCCCceeeccccccccc---------chhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcC-
Confidence            999999999975554311         111123444455554433344333222    222345679999999999999 


Q ss_pred             eE
Q 016644          301 FV  302 (385)
Q Consensus       301 F~  302 (385)
                      |+
T Consensus       206 F~  207 (225)
T d1im8a_         206 FS  207 (225)
T ss_dssp             CS
T ss_pred             CC
Confidence            86

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=3.1e-11  Score=107.24  Aligned_cols=130  Identities=16%  Similarity=0.227  Sum_probs=86.5

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEe
Q 016644           30 YANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFF  109 (385)
Q Consensus        30 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~  109 (385)
                      ++.+...++.-+..+.+++++.+           ++..+|+|+|||+|..|..+.        +.         ..+|+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~ILDiGcG~G~~~~~la--------~~---------~~~v~g   64 (226)
T d1ve3a1          13 TDINSQEYRSRIETLEPLLMKYM-----------KKRGKVLDLACGVGGFSFLLE--------DY---------GFEVVG   64 (226)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHSC-----------CSCCEEEEETCTTSHHHHHHH--------HT---------TCEEEE
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhc-----------CCCCEEEEECCCcchhhhhHh--------hh---------hccccc
Confidence            34455566666777777777633           234789999999999887664        21         257888


Q ss_pred             cCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccc
Q 016644          110 SDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMA  188 (385)
Q Consensus       110 nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~  188 (385)
                      .|+-.+.....-+.+..           .....-++.+   + ...+ ++++++|+|+|+.++||++.            
T Consensus        65 iD~S~~~i~~ak~~~~~-----------~~~~~~~~~~---d-~~~l~~~~~~fD~I~~~~~l~~~~~------------  117 (226)
T d1ve3a1          65 VDISEDMIRKAREYAKS-----------RESNVEFIVG---D-ARKLSFEDKTFDYVIFIDSIVHFEP------------  117 (226)
T ss_dssp             EESCHHHHHHHHHHHHH-----------TTCCCEEEEC---C-TTSCCSCTTCEEEEEEESCGGGCCH------------
T ss_pred             ccccccchhhhhhhhcc-----------cccccccccc---c-cccccccCcCceEEEEecchhhCCh------------
Confidence            89865544333222211           0011223332   4 3334 88999999999999999732            


Q ss_pred             cCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEecc
Q 016644          189 YNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       189 ~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                                              .|+..+|+.-++-|+|||+|++.+..
T Consensus       118 ------------------------~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         118 ------------------------LELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             ------------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------------------------hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence                                    14566778889999999999988754

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-10  Score=105.12  Aligned_cols=166  Identities=13%  Similarity=0.010  Sum_probs=106.6

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCch-----hHhh-h-
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSM-----EECL-A-  136 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~-----~~~~-~-  136 (385)
                      .+..+|+|+|||+|..++.+.+        .        .--+|+..|+..+.-..+-+.+.......     ..+. . 
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~--------~--------~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~  113 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAAC--------D--------SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL  113 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGG--------G--------TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhc--------c--------ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence            3568999999999998876541        1        12468888887666555433322110000     0000 0 


Q ss_pred             -c-------------CcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHH
Q 016644          137 -S-------------DTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEH  202 (385)
Q Consensus       137 -~-------------~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~  202 (385)
                       .             ..........+..+.....++.+++|+++|..+|||+...+                        
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~------------------------  169 (257)
T d2a14a1         114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL------------------------  169 (257)
T ss_dssp             TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSH------------------------
T ss_pred             ccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccH------------------------
Confidence             0             00001111123334445568999999999999999986533                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccc
Q 016644          203 TANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIP  282 (385)
Q Consensus       203 v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P  282 (385)
                                .|+..+|+..++-|||||+|++......+.           +                    .......+
T Consensus       170 ----------~~~~~~l~~i~~~LkpGG~li~~~~~~~~~-----------~--------------------~~~~~~~~  208 (257)
T d2a14a1         170 ----------DAYRAALCNLASLLKPGGHLVTTVTLRLPS-----------Y--------------------MVGKREFS  208 (257)
T ss_dssp             ----------HHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----------E--------------------EETTEEEE
T ss_pred             ----------HHHHHHHHHHHhccCCCcEEEEEEeccccc-----------c--------------------eecccccc
Confidence                      256778888999999999999987654210           1                    01122356


Q ss_pred             cccCCHHHHHHHHHhcCceEecEEEEEeC
Q 016644          283 VYASSLQEFKEVVEANGSFVINKLEVFKG  311 (385)
Q Consensus       283 ~y~ps~~Ev~~~le~~gsF~i~~le~~~~  311 (385)
                      .+..+.++++++++++| |+|..++....
T Consensus       209 ~~~~~~~~~~~~l~~aG-f~v~~~~~~~~  236 (257)
T d2a14a1         209 CVALEKGEVEQAVLDAG-FDIEQLLHSPQ  236 (257)
T ss_dssp             CCCCCHHHHHHHHHHTT-EEEEEEEEECC
T ss_pred             ccCCCHHHHHHHHHHCC-CEEEEEEEecc
Confidence            77889999999999999 99999987753

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=1.5e-10  Score=104.54  Aligned_cols=152  Identities=19%  Similarity=0.263  Sum_probs=95.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc-ee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS-YF  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-~f  144 (385)
                      -.+|+|+|||+|..|..+.+        +.         .+|+--|+..+.....-+.+..           ....+ -|
T Consensus        17 ~~rILDiGcGtG~~~~~la~--------~~---------~~v~gvD~S~~~l~~A~~~~~~-----------~~~~~~~~   68 (234)
T d1xxla_          17 EHRVLDIGAGAGHTALAFSP--------YV---------QECIGVDATKEMVEVASSFAQE-----------KGVENVRF   68 (234)
T ss_dssp             TCEEEEESCTTSHHHHHHGG--------GS---------SEEEEEESCHHHHHHHHHHHHH-----------HTCCSEEE
T ss_pred             CCEEEEeCCcCcHHHHHHHH--------hC---------CeEEEEeCChhhhhhhhhhhcc-----------cccccccc
Confidence            47899999999999987752        11         3577778765444333222210           00112 23


Q ss_pred             eccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      +.+   + .+.+ ||++++|+|+|+.++||+.+.+.                                      +|+...
T Consensus        69 ~~~---d-~~~~~~~~~~fD~v~~~~~l~~~~d~~~--------------------------------------~l~~~~  106 (234)
T d1xxla_          69 QQG---T-AESLPFPDDSFDIITCRYAAHHFSDVRK--------------------------------------AVREVA  106 (234)
T ss_dssp             EEC---B-TTBCCSCTTCEEEEEEESCGGGCSCHHH--------------------------------------HHHHHH
T ss_pred             ccc---c-cccccccccccceeeeeceeecccCHHH--------------------------------------HHHHHH
Confidence            333   5 3445 89999999999999999866333                                      345678


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||+++++.......             ..+...+......  .     +.  ......+..++...+++.| |.+
T Consensus       107 r~LkpgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~--~-----~~--~~~~~~~~~~~~~~~~~~g-f~~  163 (234)
T d1xxla_         107 RVLKQDGRFLLVDHYAPED-------------PVLDEFVNHLNRL--R-----DP--SHVRESSLSEWQAMFSANQ-LAY  163 (234)
T ss_dssp             HHEEEEEEEEEEEECBCSS-------------HHHHHHHHHHHHH--H-----CT--TCCCCCBHHHHHHHHHHTT-EEE
T ss_pred             HeeCCCcEEEEEEcCCCCC-------------HHHHHHHHHHHhh--C-----CC--cccccCCHHHHHHHHHHCC-Cce
Confidence            9999999999987655311             1122222222110  0     00  1222347899999999999 999


Q ss_pred             cEEEEEe
Q 016644          304 NKLEVFK  310 (385)
Q Consensus       304 ~~le~~~  310 (385)
                      ..++.+.
T Consensus       164 ~~~~~~~  170 (234)
T d1xxla_         164 QDIQKWN  170 (234)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEee
Confidence            8888775

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.09  E-value=2.2e-09  Score=99.54  Aligned_cols=150  Identities=14%  Similarity=0.129  Sum_probs=91.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..+..+.        +++        ..+|+--|+....-...-+....          .+-..++ 
T Consensus        67 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvD~s~~~i~~a~~~~~~----------~gl~~~v~  120 (282)
T d2o57a1          67 RQAKGLDLGAGYGGAARFLV--------RKF--------GVSIDCLNIAPVQNKRNEEYNNQ----------AGLADNIT  120 (282)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHHHHHHHHHHH----------HTCTTTEE
T ss_pred             CCCEEEEeCCCCcHHHhhhh--------ccC--------CcEEEEEeccchhhhhhhccccc----------cccccccc
Confidence            45899999999999877765        222        35778888754432222221110          0001122 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |..   +++.+-=+|++++|+|+|..++||+.+..                                      .+|+.-.
T Consensus       121 ~~~---~d~~~l~~~~~sfD~V~~~~~l~h~~d~~--------------------------------------~~l~~~~  159 (282)
T d2o57a1         121 VKY---GSFLEIPCEDNSYDFIWSQDAFLHSPDKL--------------------------------------KVFQECA  159 (282)
T ss_dssp             EEE---CCTTSCSSCTTCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHH
T ss_pred             ccc---cccccccccccccchhhccchhhhccCHH--------------------------------------HHHHHHH
Confidence            333   46544338999999999999999985432                                      2345678


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||+|++..........       .   ..+...+...              ..| ..++.+++...+++.| |+.
T Consensus       160 ~~LkpgG~l~~~~~~~~~~~~-------~---~~~~~~~~~~--------------~~~-~~~s~~~~~~~l~~~G-f~~  213 (282)
T d2o57a1         160 RVLKPRGVMAITDPMKEDGID-------K---SSIQPILDRI--------------KLH-DMGSLGLYRSLAKECG-LVT  213 (282)
T ss_dssp             HHEEEEEEEEEEEEEECTTCC-------G---GGGHHHHHHH--------------TCS-SCCCHHHHHHHHHHTT-EEE
T ss_pred             HhcCCCcEEEEEEeecCCCCc-------h---hHHHHHHHHh--------------ccC-CCCCHHHHHHHHHHcC-Cce
Confidence            999999999998655432110       0   0012222211              112 3468899999999999 875


Q ss_pred             cEEE
Q 016644          304 NKLE  307 (385)
Q Consensus       304 ~~le  307 (385)
                      ...+
T Consensus       214 i~~~  217 (282)
T d2o57a1         214 LRTF  217 (282)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.05  E-value=3.9e-10  Score=103.88  Aligned_cols=144  Identities=15%  Similarity=0.147  Sum_probs=94.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|+|||+|..|..++...               . -+|..-|.-.......-+.+..             .+.+ 
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~---------------~-~~v~~vD~s~~~l~~a~~~~~~-------------~~~~~  143 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKL---------------Y-ATTDLLEPVKHMLEEAKRELAG-------------MPVGK  143 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH---------------C-SEEEEEESCHHHHHHHHHHTTT-------------SSEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhc---------------C-ceEEEEcCCHHHHHhhhccccc-------------cccce
Confidence            56899999999999998775322               2 3677788755444443333331             1111 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |..   +++.+--++++++|+|+|..++||+++                                    .|+..||+..+
T Consensus       144 ~~~---~d~~~~~~~~~~fD~I~~~~vl~hl~d------------------------------------~d~~~~l~~~~  184 (254)
T d1xtpa_         144 FIL---ASMETATLPPNTYDLIVIQWTAIYLTD------------------------------------ADFVKFFKHCQ  184 (254)
T ss_dssp             EEE---SCGGGCCCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHH
T ss_pred             eEE---ccccccccCCCccceEEeeccccccch------------------------------------hhhHHHHHHHH
Confidence            222   253333378899999999999999854                                    24567888899


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +.|+|||++++.-......        ...                      .+. .-+...+|.++++++++++| |++
T Consensus       185 ~~LkpgG~iii~e~~~~~~--------~~~----------------------~d~-~d~~~~rs~~~~~~l~~~aG-f~i  232 (254)
T d1xtpa_         185 QALTPNGYIFFKENCSTGD--------RFL----------------------VDK-EDSSLTRSDIHYKRLFNESG-VRV  232 (254)
T ss_dssp             HHEEEEEEEEEEEEBC--C--------CEE----------------------EET-TTTEEEBCHHHHHHHHHHHT-CCE
T ss_pred             HhcCCCcEEEEEecCCCCC--------cce----------------------ecc-cCCceeCCHHHHHHHHHHcC-CEE
Confidence            9999999999865433210        010                      011 12445679999999999999 988


Q ss_pred             cEEEE
Q 016644          304 NKLEV  308 (385)
Q Consensus       304 ~~le~  308 (385)
                      .+.+.
T Consensus       233 i~~~~  237 (254)
T d1xtpa_         233 VKEAF  237 (254)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76554

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.05  E-value=5.8e-10  Score=102.31  Aligned_cols=159  Identities=18%  Similarity=0.209  Sum_probs=99.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +.-+|+|+|||+|..++.+.        +++       |..+++.-|+|. .....-+.+..          ..-..++ 
T Consensus        80 ~~~~VLDvGcG~G~~~~~la--------~~~-------p~~~~~~~D~~~-~~~~a~~~~~~----------~~~~~rv-  132 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIA--------RRA-------PHVSATVLEMAG-TVDTARSYLKD----------EGLSDRV-  132 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECTT-HHHHHHHHHHH----------TTCTTTE-
T ss_pred             cCCEEEEeCCCCCHHHHHHH--------Hhc-------ceeEEEEccCHH-HHHHHHHHHHH----------hhcccch-
Confidence            45789999999999988886        333       778999999974 33333222221          0001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..++++|++.. | .++|+++++++||.+++.                                    +...+|+.-++
T Consensus       133 -~~~~~D~~~~~-~-~~~D~v~~~~vlh~~~d~------------------------------------~~~~~L~~~~~  173 (253)
T d1tw3a2         133 -DVVEGDFFEPL-P-RKADAIILSFVLLNWPDH------------------------------------DAVRILTRCAE  173 (253)
T ss_dssp             -EEEECCTTSCC-S-SCEEEEEEESCGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             -hhccccchhhc-c-cchhheeeccccccCCch------------------------------------hhHHHHHHHHH
Confidence             34567887643 3 569999999999975431                                    22346677889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      .|+|||+|++.-.......     ......   ....+.-|+.-|             -..+|.+|+++++++.| |++.
T Consensus       174 ~LkPGG~l~i~e~~~~~~~-----~~~~~~---~~~dl~~~~~~~-------------g~~rt~~e~~~ll~~AG-f~~~  231 (253)
T d1tw3a2         174 ALEPGGRILIHERDDLHEN-----SFNEQF---TELDLRMLVFLG-------------GALRTREKWDGLAASAG-LVVE  231 (253)
T ss_dssp             TEEEEEEEEEEECCBCGGG-----CCSHHH---HHHHHHHHHHHS-------------CCCCBHHHHHHHHHHTT-EEEE
T ss_pred             hcCCCcEEEEEeccCCCCC-----cchhHH---HHhhHHHHhhCC-------------CcCCCHHHHHHHHHHCC-CeEE
Confidence            9999999988643322110     000110   111122222222             13478999999999999 9999


Q ss_pred             EEEEEeC
Q 016644          305 KLEVFKG  311 (385)
Q Consensus       305 ~le~~~~  311 (385)
                      ++..+..
T Consensus       232 ~v~~~~~  238 (253)
T d1tw3a2         232 EVRQLPS  238 (253)
T ss_dssp             EEEEEEC
T ss_pred             EEEECCC
Confidence            8888763

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=1e-09  Score=96.82  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=63.1

Q ss_pred             ccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeE
Q 016644          154 RRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSM  232 (385)
Q Consensus       154 ~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  232 (385)
                      +.+ ++++++|+|+|+.+|||+.+..                                      .+|+.-++-|+|||+|
T Consensus        83 ~~l~~~~~~fD~I~~~~~l~h~~d~~--------------------------------------~~l~~~~~~L~pgG~l  124 (208)
T d1vlma_          83 ENLPLKDESFDFALMVTTICFVDDPE--------------------------------------RALKEAYRILKKGGYL  124 (208)
T ss_dssp             TBCCSCTTCEEEEEEESCGGGSSCHH--------------------------------------HHHHHHHHHEEEEEEE
T ss_pred             cccccccccccccccccccccccccc--------------------------------------cchhhhhhcCCCCceE
Confidence            444 8899999999999999996522                                      2446678899999999


Q ss_pred             EEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEE
Q 016644          233 FLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEV  308 (385)
Q Consensus       233 vl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~  308 (385)
                      ++..+...+            +   +...+.    ...    ....+..-.+++|.+|+..++++.| |++.++..
T Consensus       125 ~i~~~~~~~------------~---~~~~~~----~~~----~~~~~~~~~~~~s~~~l~~~l~~~G-f~~i~v~~  176 (208)
T d1vlma_         125 IVGIVDRES------------F---LGREYE----KNK----EKSVFYKNARFFSTEELMDLMRKAG-FEEFKVVQ  176 (208)
T ss_dssp             EEEEECSSS------------H---HHHHHH----HTT----TC-CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEE
T ss_pred             EEEecCCcc------------h---hHHhhh----hcc----ccccccccccCCCHHHHHHHHHHcC-CeEEEEEE
Confidence            999876531            1   111111    110    0112223345789999999999999 98766554

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.4e-09  Score=97.19  Aligned_cols=150  Identities=9%  Similarity=-0.003  Sum_probs=95.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      ..+|+|+|||+|..+..+.        +++        ..+|+--|+-.......-+....          ..-..++ |
T Consensus        34 g~~VLDiGCG~G~~~~~la--------~~~--------~~~v~GvD~s~~~~~~ar~~~~~----------~gl~~~v~~   87 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWA--------RDH--------GITGTGIDMSSLFTAQAKRRAEE----------LGVSERVHF   87 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHH--------HHT--------CCEEEEEESCHHHHHHHHHHHHH----------TTCTTTEEE
T ss_pred             CCEEEEEcCCCCHHHHHHH--------Hhc--------CCEEEEEecccchhhHHHHHHHH----------hhccccchh
Confidence            4789999999998777654        222        36788889855443322221110          0001122 4


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..   +++ ..++|++++|+|+|..++||+.+.+..+                                      +...+
T Consensus        88 ~~---~d~-~~~~~~~~fD~v~~~~~~~~~~d~~~~l--------------------------------------~~~~r  125 (245)
T d1nkva_          88 IH---NDA-AGYVANEKCDVAACVGATWIAGGFAGAE--------------------------------------ELLAQ  125 (245)
T ss_dssp             EE---SCC-TTCCCSSCEEEEEEESCGGGTSSSHHHH--------------------------------------HHHTT
T ss_pred             hh---hHH-hhccccCceeEEEEEehhhccCCHHHHH--------------------------------------HHHHH
Confidence            43   464 4568999999999999999998755444                                      55789


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN  304 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~  304 (385)
                      -|+|||++++...+......         . +.+...|.               ...+..+.+..++...+++.| |++.
T Consensus       126 ~LkPGG~l~i~~~~~~~~~~---------~-~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~aG-~~~v  179 (245)
T d1nkva_         126 SLKPGGIMLIGEPYWRQLPA---------T-EEIAQACG---------------VSSTSDFLTLPGLVGAFDDLG-YDVV  179 (245)
T ss_dssp             SEEEEEEEEEEEEEETTCCS---------S-HHHHHTTT---------------CSCGGGSCCHHHHHHHHHTTT-BCCC
T ss_pred             HcCcCcEEEEEeccccCCCC---------h-HHHHHHhc---------------cCCCcccCCHHHHHHHHHHcC-CEEE
Confidence            99999999998877642110         0 11222221               011223568899999999999 8876


Q ss_pred             EEEEE
Q 016644          305 KLEVF  309 (385)
Q Consensus       305 ~le~~  309 (385)
                      .+...
T Consensus       180 ~~~~~  184 (245)
T d1nkva_         180 EMVLA  184 (245)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            65543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=6e-09  Score=97.36  Aligned_cols=163  Identities=17%  Similarity=0.163  Sum_probs=99.0

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +-.+|+|+|||.|..++.+.        +++       + .+|.--|+..+.....-+....          .+-...+ 
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a--------~~~-------g-~~v~gi~ls~~q~~~a~~~~~~----------~~l~~~~~  105 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAV--------ERF-------D-VNVIGLTLSKNQHARCEQVLAS----------IDTNRSRQ  105 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHH-------C-CEEEEEESCHHHHHHHHHHHHT----------SCCSSCEE
T ss_pred             CCCEEEEecCCchHHHHHHH--------HhC-------c-eeEEEecchHHHHHHHHHHHHh----------hccccchh
Confidence            35899999999999887765        232       2 6888888876654433222211          0001112 


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      +...   . |.  .+++++|.|+|..+++.+.+                                    +++..||+..+
T Consensus       106 ~~~~---d-~~--~~~~~fD~i~si~~~eh~~~------------------------------------~~~~~~f~~i~  143 (280)
T d2fk8a1         106 VLLQ---G-WE--DFAEPVDRIVSIEAFEHFGH------------------------------------ENYDDFFKRCF  143 (280)
T ss_dssp             EEES---C-GG--GCCCCCSEEEEESCGGGTCG------------------------------------GGHHHHHHHHH
T ss_pred             hhhh---h-hh--hhccchhhhhHhhHHHHhhh------------------------------------hhHHHHHHHHH
Confidence            2211   2 22  34689999999999988643                                    13567788899


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccc-ccCCHHHHHHHHHhcCceE
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPV-YASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~~Ev~~~le~~gsF~  302 (385)
                      +-|||||+|++...+..+........  ... ..-..-+.+.+.          .+.+|- +.||.+|+..++++.| |+
T Consensus       144 ~~LkpgG~~~i~~i~~~~~~~~~~~~--~~~-~~~~~~~~dfI~----------kyifPgg~lPS~~~l~~~~e~aG-f~  209 (280)
T d2fk8a1         144 NIMPADGRMTVQSSVSYHPYEMAARG--KKL-SFETARFIKFIV----------TEIFPGGRLPSTEMMVEHGEKAG-FT  209 (280)
T ss_dssp             HHSCTTCEEEEEEEECCCHHHHHTTC--HHH-HHHHHHHHHHHH----------HHTSTTCCCCCHHHHHHHHHHTT-CB
T ss_pred             hccCCCceEEEEEeeccCcchhhhcc--ccc-ccccccccchhh----------hhccCCCcccchHhhhhhHHhhc-cc
Confidence            99999999999876653210000000  000 000111122222          234565 6799999999999998 99


Q ss_pred             ecEEEEE
Q 016644          303 INKLEVF  309 (385)
Q Consensus       303 i~~le~~  309 (385)
                      +..++.+
T Consensus       210 v~~~~~~  216 (280)
T d2fk8a1         210 VPEPLSL  216 (280)
T ss_dssp             CCCCEEC
T ss_pred             cceeeec
Confidence            8877765

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.2e-09  Score=100.77  Aligned_cols=97  Identities=18%  Similarity=0.199  Sum_probs=72.5

Q ss_pred             cCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016644          149 PGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKR  228 (385)
Q Consensus       149 pgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p  228 (385)
                      ++.+...-++++++|+|.|+++|||++..+.                                  |+..+|+..++-|||
T Consensus       145 ~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~----------------------------------~~~~~l~~~~~~LkP  190 (263)
T d2g72a1         145 PQPLGAGSPAPLPADALVSAFCLEAVSPDLA----------------------------------SFQRALDHITTLLRP  190 (263)
T ss_dssp             SSTTCSSCSSCSSEEEEEEESCHHHHCSSHH----------------------------------HHHHHHHHHHTTEEE
T ss_pred             CCccccCCcCcCccCeeeeHHHHHHHccCHH----------------------------------HHHHHHHHHHHHcCC
Confidence            3344444467889999999999999876432                                  466778889999999


Q ss_pred             CCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEE
Q 016644          229 CGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEV  308 (385)
Q Consensus       229 GG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~  308 (385)
                      ||.|++....+.+           .+                    .+..-..+.+..+.+|+++++++.| |++.+++.
T Consensus       191 GG~li~~~~~~~~-----------~~--------------------~~~~~~~~~~~~t~e~v~~~l~~aG-f~v~~~~~  238 (263)
T d2g72a1         191 GGHLLLIGALEES-----------WY--------------------LAGEARLTVVPVSEEEVREALVRSG-YKVRDLRT  238 (263)
T ss_dssp             EEEEEEEEEESCC-----------EE--------------------EETTEEEECCCCCHHHHHHHHHHTT-EEEEEEEE
T ss_pred             CCEEEEecccCCc-----------cc--------------------ccCCcccccCCCCHHHHHHHHHHCC-CeEEEEEE
Confidence            9999988765421           00                    0112234678889999999999999 99999988


Q ss_pred             EeC
Q 016644          309 FKG  311 (385)
Q Consensus       309 ~~~  311 (385)
                      ...
T Consensus       239 ~~~  241 (263)
T d2g72a1         239 YIM  241 (263)
T ss_dssp             EEC
T ss_pred             eec
Confidence            763

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.1e-09  Score=98.02  Aligned_cols=145  Identities=13%  Similarity=0.082  Sum_probs=97.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc-e
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS-Y  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-~  143 (385)
                      +..+|+|+|||+|.++..+++..               + -+|+.-|+..+.....-+.+...           ...+ -
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~---------------~-~~v~~vD~s~~~l~~ak~~~~~~-----------~~~~~~  112 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPL---------------F-REVDMVDITEDFLVQAKTYLGEE-----------GKRVRN  112 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT---------------C-SEEEEEESCHHHHHHHHHHTGGG-----------GGGEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhc---------------C-CEEEEeecCHHHhhccccccccc-----------cccccc
Confidence            45789999999999988775211               2 36888898776555544444310           0111 2


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |..   +++.+--++++++|+|+|..++|++.+ |                                   |+..+|+.-+
T Consensus       113 f~~---~d~~~~~~~~~~fD~I~~~~~l~h~~~-~-----------------------------------~~~~~l~~i~  153 (222)
T d2ex4a1         113 YFC---CGLQDFTPEPDSYDVIWIQWVIGHLTD-Q-----------------------------------HLAEFLRRCK  153 (222)
T ss_dssp             EEE---CCGGGCCCCSSCEEEEEEESCGGGSCH-H-----------------------------------HHHHHHHHHH
T ss_pred             ccc---ccccccccccccccccccccccccchh-h-----------------------------------hhhhHHHHHH
Confidence            333   476665588999999999999999854 1                                   2445667788


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      +-|+|||++++......+.         ..+                      + ..-..+.++.++++++++++| |++
T Consensus       154 ~~Lk~~G~~~i~~~~~~~~---------~~~----------------------~-~~~~~~~~~~~~~~~l~~~aG-f~i  200 (222)
T d2ex4a1         154 GSLRPNGIIVIKDNMAQEG---------VIL----------------------D-DVDSSVCRDLDVVRRIICSAG-LSL  200 (222)
T ss_dssp             HHEEEEEEEEEEEEEBSSS---------EEE----------------------E-TTTTEEEEBHHHHHHHHHHTT-CCE
T ss_pred             HhcCCcceEEEEEcccccc---------ccc----------------------c-cCCceeeCCHHHHHHHHHHcC-CEE
Confidence            9999999999876433210         101                      0 012445678999999999999 988


Q ss_pred             cEEEE
Q 016644          304 NKLEV  308 (385)
Q Consensus       304 ~~le~  308 (385)
                      .+.+.
T Consensus       201 i~~~~  205 (222)
T d2ex4a1         201 LAEER  205 (222)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77664

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.87  E-value=1.2e-09  Score=94.41  Aligned_cols=166  Identities=10%  Similarity=0.068  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCC
Q 016644           46 HLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLP  125 (385)
Q Consensus        46 ~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~  125 (385)
                      |-|++.+..+..      ++..+|+|+|||+|.+++.+.+        +         .++|+-.|+..+.-....+...
T Consensus         7 ~~~~~~~~~l~~------~~~~rvLd~GCG~G~~a~~la~--------~---------G~~V~gvD~S~~~i~~a~~~~~   63 (201)
T d1pjza_           7 KDLQQYWSSLNV------VPGARVLVPLCGKSQDMSWLSG--------Q---------GYHVVGAELSEAAVERYFTERG   63 (201)
T ss_dssp             HHHHHHHHHHCC------CTTCEEEETTTCCSHHHHHHHH--------H---------CCEEEEEEECHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCC------CCCCEEEEecCcCCHHHHHHHH--------c---------CCceEeecccHHHHHHHHHHhc
Confidence            335555555532      3467999999999999998862        2         3788888988777666655543


Q ss_pred             CCCCchh--HhhhcCcCCceeeccccCccccc-cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHH
Q 016644          126 PIGSSME--ECLASDTHRSYFAAGVPGSFYRR-LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEH  202 (385)
Q Consensus       126 ~~~~~~~--~~~~~~~~~~~f~~~vpgSFy~r-LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~  202 (385)
                      .......  ..........-|..   +++..- ..+..++|+++|+.++|++..                          
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~~~~D~i~~~~~l~~l~~--------------------------  114 (201)
T d1pjza_          64 EQPHITSQGDFKVYAAPGIEIWC---GDFFALTARDIGHCAAFYDRAAMIALPA--------------------------  114 (201)
T ss_dssp             SCSEEEEETTEEEEECSSSEEEE---ECCSSSTHHHHHSEEEEEEESCGGGSCH--------------------------
T ss_pred             cccchhhhhhhhhccccccceec---ccccccccccccceeEEEEEeeeEecch--------------------------
Confidence            2110000  00000000111211   233221 145678999999999999754                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccc
Q 016644          203 TANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIP  282 (385)
Q Consensus       203 v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P  282 (385)
                                .++..+++.-++.|+|||++++.........                                   ..-|
T Consensus       115 ----------~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~-----------------------------------~~~p  149 (201)
T d1pjza_         115 ----------DMRERYVQHLEALMPQACSGLLITLEYDQAL-----------------------------------LEGP  149 (201)
T ss_dssp             ----------HHHHHHHHHHHHHSCSEEEEEEEEESSCSSS-----------------------------------SSSC
T ss_pred             ----------hhhHHHHHHHHHhcCCCcEEEEEEccccccc-----------------------------------CCCc
Confidence                      1244556778999999999988876653110                                   1136


Q ss_pred             cccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644          283 VYASSLQEFKEVVEANGSFVINKLEVFK  310 (385)
Q Consensus       283 ~y~ps~~Ev~~~le~~gsF~i~~le~~~  310 (385)
                      .|..+.+|+++++. .+ |++..++..+
T Consensus       150 ~~~~~~~el~~l~~-~~-~~i~~~~~~~  175 (201)
T d1pjza_         150 PFSVPQTWLHRVMS-GN-WEVTKVGGQD  175 (201)
T ss_dssp             CCCCCHHHHHHTSC-SS-EEEEEEEESS
T ss_pred             cccCCHHHHHHHhC-CC-cEEEEEEEec
Confidence            66778888887764 44 8877766543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.85  E-value=5.1e-09  Score=93.93  Aligned_cols=153  Identities=13%  Similarity=0.116  Sum_probs=90.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      +-+|+|+|||+|..+..+.+        .         -.+|+.-|+-.+.-+..-+.+.              .+--|+
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~--------~---------g~~v~giD~s~~~i~~a~~~~~--------------~~~~~~   69 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQE--------H---------FNDITCVEASEEAISHAQGRLK--------------DGITYI   69 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTT--------T---------CSCEEEEESCHHHHHHHHHHSC--------------SCEEEE
T ss_pred             CCcEEEEeCCCcHHHHHHHH--------c---------CCeEEEEeCcHHHhhhhhcccc--------------cccccc
Confidence            45799999999999887641        1         1357778864332222222221              111233


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      .   ++ .+.+.+++++|+|++..+|||+++....+.                                     +.+.+-
T Consensus        70 ~---~~-~~~~~~~~~fD~I~~~~vleh~~d~~~~l~-------------------------------------~i~~~~  108 (225)
T d2p7ia1          70 H---SR-FEDAQLPRRYDNIVLTHVLEHIDDPVALLK-------------------------------------RINDDW  108 (225)
T ss_dssp             E---SC-GGGCCCSSCEEEEEEESCGGGCSSHHHHHH-------------------------------------HHHHTT
T ss_pred             c---cc-ccccccccccccccccceeEecCCHHHHHH-------------------------------------HHHHHh
Confidence            3   24 445667899999999999999976443331                                     223477


Q ss_pred             hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccc-c--ccccc-cccCCHHHHHHHHHhcCce
Q 016644          226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKR-D--SFNIP-VYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~-d--~f~~P-~y~ps~~Ev~~~le~~gsF  301 (385)
                      |+|||.++++++-..           . ++. ....+     .|.+..... .  ....+ ....+.++++..+++.| |
T Consensus       109 Lk~gG~l~i~~pn~~-----------~-~~~-~~~~~-----~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~G-f  169 (225)
T d2p7ia1         109 LAEGGRLFLVCPNAN-----------A-VSR-QIAVK-----MGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG-L  169 (225)
T ss_dssp             EEEEEEEEEEEECTT-----------C-HHH-HHHHH-----TTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT-C
T ss_pred             cCCCceEEEEeCCcc-----------c-HHH-HHHHH-----hhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCC-C
Confidence            999999999986542           1 111 11111     122211110 0  01111 22348999999999999 9


Q ss_pred             EecEEEEE
Q 016644          302 VINKLEVF  309 (385)
Q Consensus       302 ~i~~le~~  309 (385)
                      +|.+.+.+
T Consensus       170 ~i~~~~~~  177 (225)
T d2p7ia1         170 QVTYRSGI  177 (225)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99887754

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=3.8e-08  Score=92.36  Aligned_cols=168  Identities=13%  Similarity=0.142  Sum_probs=100.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHH---HHhcCCCCCCchhHhhhcCcCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNT---LFQLLPPIGSSMEECLASDTHR  141 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~---lF~~l~~~~~~~~~~~~~~~~~  141 (385)
                      +-.+|+|+|||.|..++.+.        +++       + .+|.--|+..+...-   ..+.+.-            ...
T Consensus        61 ~G~~VLDiGCG~G~~~~~~a--------~~~-------g-~~v~git~s~~q~~~a~~~~~~~~l------------~~~  112 (291)
T d1kpia_          61 PGMTLLDIGCGWGSTMRHAV--------AEY-------D-VNVIGLTLSENQYAHDKAMFDEVDS------------PRR  112 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHH-------C-CEEEEEESCHHHHHHHHHHHHHSCC------------SSC
T ss_pred             CCCEEEEecCcchHHHHHHH--------Hhc-------C-cceeeccchHHHHHHHHHHHHhhcc------------chh
Confidence            34899999999999887765        333       3 577777776543222   1222110            001


Q ss_pred             ceeeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          142 SYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       142 ~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      ..+...   + |  -++++++|.|+|--++.-+.+......                             .+.|..|++.
T Consensus       113 v~~~~~---d-~--~~~~~~fD~i~sie~~eH~~~~~~~~~-----------------------------~~~~~~~f~~  157 (291)
T d1kpia_         113 KEVRIQ---G-W--EEFDEPVDRIVSLGAFEHFADGAGDAG-----------------------------FERYDTFFKK  157 (291)
T ss_dssp             EEEEEC---C-G--GGCCCCCSEEEEESCGGGTTCCSSCCS-----------------------------TTHHHHHHHH
T ss_pred             hhhhhh---c-c--cccccccceEeechhHHhcchhhhhhH-----------------------------HHHHHHHHHH
Confidence            111111   2 2  267899999999999965544222110                             2347788999


Q ss_pred             HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccc-ccCCHHHHHHHHHhcCc
Q 016644          222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPV-YASSLQEFKEVVEANGS  300 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~~Ev~~~le~~gs  300 (385)
                      .++-|+|||+|++...+..+.....+.......   -.....+.....          .+|- +.||.+|+...+++.| 
T Consensus       158 i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~---~~~~~~~fi~ky----------iFpgg~lps~~~~~~~~e~~g-  223 (291)
T d1kpia_         158 FYNLTPDDGRMLLHTITIPDKEEAQELGLTSPM---SLLRFIKFILTE----------IFPGGRLPRISQVDYYSSNAG-  223 (291)
T ss_dssp             HHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCH---HHHHHHHHHHHH----------TCTTCCCCCHHHHHHHHHHHT-
T ss_pred             HHHhCCCCCceEEEEEeccCcchhhhccCCCch---hhcccchHHHHH----------hcCCCCCCCHHHHHhhhcccc-
Confidence            999999999999998886432000000000000   111122232222          2453 6789999999999999 


Q ss_pred             eEecEEEEE
Q 016644          301 FVINKLEVF  309 (385)
Q Consensus       301 F~i~~le~~  309 (385)
                      |+|+..+.+
T Consensus       224 l~v~~~~~~  232 (291)
T d1kpia_         224 WKVERYHRI  232 (291)
T ss_dssp             CEEEEEEEC
T ss_pred             cccceeeec
Confidence            999888765

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=4.4e-09  Score=97.29  Aligned_cols=100  Identities=21%  Similarity=0.266  Sum_probs=69.0

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      .+..+|+|+|||+|..+..+.+.        .       |..+++-.|+-...-....+..+               +--
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~--------~-------~~~~~~giD~s~~~~~~a~~~~~---------------~~~  132 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADA--------L-------PEITTFGLDVSKVAIKAAAKRYP---------------QVT  132 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHT--------C-------TTSEEEEEESCHHHHHHHHHHCT---------------TSE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHH--------C-------CCCEEEEecchHhhhhhhhcccc---------------ccc
Confidence            35689999999999999887632        2       66788888985544333333222               112


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |..+   +...--|+++++|+|++..++|++.+                                             -+
T Consensus       133 ~~~~---d~~~l~~~~~sfD~v~~~~~~~~~~e---------------------------------------------~~  164 (268)
T d1p91a_         133 FCVA---SSHRLPFSDTSMDAIIRIYAPCKAEE---------------------------------------------LA  164 (268)
T ss_dssp             EEEC---CTTSCSBCTTCEEEEEEESCCCCHHH---------------------------------------------HH
T ss_pred             ceee---ehhhccCCCCCEEEEeecCCHHHHHH---------------------------------------------HH
Confidence            3333   54333389999999999888777421                                             24


Q ss_pred             hhhccCCeEEEEeccCCC
Q 016644          224 KEMKRCGSMFLVCLGRTS  241 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~  241 (385)
                      +-|||||+|+++.++.+.
T Consensus       165 rvLkpgG~l~~~~p~~~~  182 (268)
T d1p91a_         165 RVVKPGGWVITATPGPRH  182 (268)
T ss_dssp             HHEEEEEEEEEEEECTTT
T ss_pred             HHhCCCcEEEEEeeCCcc
Confidence            679999999999988753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=8.3e-07  Score=82.68  Aligned_cols=162  Identities=19%  Similarity=0.296  Sum_probs=93.9

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      -.+|+|+|||.|..++.+...        +        ..+|.--++..+.....-+....          .+....+ +
T Consensus        63 G~~VLDiGCG~G~~a~~~a~~--------~--------g~~v~git~s~~Q~~~a~~~~~~----------~g~~~~v~~  116 (285)
T d1kpga_          63 GMTLLDVGCGWGATMMRAVEK--------Y--------DVNVVGLTLSKNQANHVQQLVAN----------SENLRSKRV  116 (285)
T ss_dssp             TCEEEEETCTTSHHHHHHHHH--------H--------CCEEEEEESCHHHHHHHHHHHHT----------CCCCSCEEE
T ss_pred             CCEEEEecCcchHHHHHHHhc--------C--------CcceEEEeccHHHHHHHHHHHHh----------hhhhhhhHH
Confidence            489999999999988887632        2        25666556544333322111100          0001111 2


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .   -++| ..  .++++|-++|-.++..+...                                    ++..|++...+
T Consensus       117 ~---~~d~-~~--~~~~fD~i~si~~~eh~~~~------------------------------------~~~~~~~~~~r  154 (285)
T d1kpga_         117 L---LAGW-EQ--FDEPVDRIVSIGAFEHFGHE------------------------------------RYDAFFSLAHR  154 (285)
T ss_dssp             E---ESCG-GG--CCCCCSEEEEESCGGGTCTT------------------------------------THHHHHHHHHH
T ss_pred             H---Hhhh-hc--ccccccceeeehhhhhcCch------------------------------------hHHHHHHHHHh
Confidence            2   2243 22  35799999999998886431                                    24567788999


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccc-cccCCHHHHHHHHHhcCceEe
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIP-VYASSLQEFKEVVEANGSFVI  303 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~~Ev~~~le~~gsF~i  303 (385)
                      -|+|||+|++...+...........  ..... ......+.+..-+          +| -+.||.+++...+++.| |+|
T Consensus       155 ~LkpgG~~~l~~i~~~~~~~~~~~~--~~~~~-~~~~~~~fi~kyi----------Fpgg~lPsl~~~~~~~e~ag-f~v  220 (285)
T d1kpga_         155 LLPADGVMLLHTITGLHPKEIHERG--LPMSF-TFARFLKFIVTEI----------FPGGRLPSIPMVQECASANG-FTV  220 (285)
T ss_dssp             HSCTTCEEEEEEEEECCHHHHTTTT--CSCHH-HHHHHHHHHHHHT----------STTCCCCCHHHHHHHHHTTT-CEE
T ss_pred             hcCCCCcEEEEEEeccCchhhcccc--CCcch-hhhchhhHHHHHh----------ccCCCCCChhhHHHHHHHhc-hhh
Confidence            9999999999888753210000000  11101 1111122323221          23 35689999999999999 998


Q ss_pred             cEEEEE
Q 016644          304 NKLEVF  309 (385)
Q Consensus       304 ~~le~~  309 (385)
                      +.++.+
T Consensus       221 ~~~~~~  226 (285)
T d1kpga_         221 TRVQSL  226 (285)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            777654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.72  E-value=1.2e-08  Score=91.89  Aligned_cols=106  Identities=15%  Similarity=0.170  Sum_probs=72.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +.-+|+|+|||+|..|+.+.+        .         ..+|+..|+..+.-...-+.++.           ...+.-|
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~--------~---------~~~v~gvD~s~~mi~~a~~~~~~-----------~~~~i~~   92 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAE--------R---------GYEVVGLDLHEEMLRVARRKAKE-----------RNLKIEF   92 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHH-----------TTCCCEE
T ss_pred             CCCEEEEeCCCCCccchhhcc--------c---------ceEEEEEeecccccccccccccc-----------ccccchh
Confidence            456899999999998887652        1         25788889876655544333221           0111223


Q ss_pred             eccccCccccccCCCCcccEEEcc-cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSA-FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss-~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      ..+   + .+.|-+++++|+|+|. .++||++.                                    .|+..+|+..+
T Consensus        93 ~~~---d-~~~l~~~~~fD~I~~~~~~~~~~~~------------------------------------~~~~~~L~~~~  132 (251)
T d1wzna1          93 LQG---D-VLEIAFKNEFDAVTMFFSTIMYFDE------------------------------------EDLRKLFSKVA  132 (251)
T ss_dssp             EES---C-GGGCCCCSCEEEEEECSSGGGGSCH------------------------------------HHHHHHHHHHH
T ss_pred             eeh---h-hhhcccccccchHhhhhhhhhcCCh------------------------------------HHHHHHHHHHH
Confidence            333   5 4666566899999986 67888732                                    14567889999


Q ss_pred             hhhccCCeEEEEecc
Q 016644          224 KEMKRCGSMFLVCLG  238 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g  238 (385)
                      +-|+|||++++.+..
T Consensus       133 ~~LkpgG~lii~~~~  147 (251)
T d1wzna1         133 EALKPGGVFITDFPC  147 (251)
T ss_dssp             HHEEEEEEEEEEEEC
T ss_pred             HHcCCCcEEEEEecc
Confidence            999999999998755

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.72  E-value=2.4e-08  Score=91.66  Aligned_cols=156  Identities=17%  Similarity=0.222  Sum_probs=95.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ..-+|+|+|||+|..+..+.        +++       |.++++.-|+|.. -...-+.+..          ......  
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~--------~~~-------P~~~~~~~Dlp~~-~~~a~~~~~~----------~~~~~r--  132 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIA--------LRA-------PHLRGTLVELAGP-AERARRRFAD----------AGLADR--  132 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH-HHHHHHHHHH----------TTCTTT--
T ss_pred             cCCEEEEECCCCCHHHHHHH--------Hhh-------cCcEEEEecChHH-HHHHHHHHhh----------cCCcce--
Confidence            34689999999998887776        344       7889999999842 1111111110          000112  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +.-++++|+..+ | .+.|+++..+.||=+++                                    ++...+|+.-++
T Consensus       133 i~~~~~d~~~~~-p-~~~D~v~~~~vLh~~~d------------------------------------~~~~~lL~~i~~  174 (256)
T d1qzza2         133 VTVAEGDFFKPL-P-VTADVVLLSFVLLNWSD------------------------------------EDALTILRGCVR  174 (256)
T ss_dssp             EEEEECCTTSCC-S-CCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHH
T ss_pred             eeeeeeeccccc-c-ccchhhhccccccccCc------------------------------------HHHHHHHHHHHh
Confidence            224667888753 4 45899999999984332                                    123456777899


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH---HHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND---LVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF  301 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~---mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF  301 (385)
                      .|+|||++++.=.-..+..     .  .   .....++.+   |+..|             -..+|.+|+++++++.| |
T Consensus       175 ~LkpgG~llI~d~~~~~~~-----~--~---~~~~~~~~d~~ml~~~~-------------g~~rt~~e~~~ll~~AG-f  230 (256)
T d1qzza2         175 ALEPGGRLLVLDRADVEGD-----G--A---DRFFSTLLDLRMLTFMG-------------GRVRTRDEVVDLAGSAG-L  230 (256)
T ss_dssp             HEEEEEEEEEEECCH-----------------HHHHHHHHHHHHHHHS-------------CCCCCHHHHHHHHHTTT-E
T ss_pred             hcCCcceeEEEEeccCCCC-----c--c---cHHHHHHHHHHHHhhCC-------------CccCCHHHHHHHHHHCC-C
Confidence            9999999987643221110     0  0   011222222   22211             23478999999999999 9


Q ss_pred             EecEEEEEe
Q 016644          302 VINKLEVFK  310 (385)
Q Consensus       302 ~i~~le~~~  310 (385)
                      ++.+.....
T Consensus       231 ~~~~~~~~~  239 (256)
T d1qzza2         231 ALASERTSG  239 (256)
T ss_dssp             EEEEEEEEC
T ss_pred             ceeEEEEeC
Confidence            988877654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=9.6e-09  Score=91.85  Aligned_cols=99  Identities=13%  Similarity=0.181  Sum_probs=67.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..+..+.        +         ...+|+..|+.......+-+..                ...+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~--------~---------~~~~v~giD~s~~~l~~a~~~~----------------~~~~   88 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQ--------E---------RGFEVVLVDPSKEMLEVAREKG----------------VKNV   88 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHH--------T---------TTCEEEEEESCHHHHHHHHHHT----------------CSCE
T ss_pred             CCCEEEEECCCCchhccccc--------c---------cceEEEEeeccccccccccccc----------------cccc
Confidence            45789999999999998774        1         1257888898654333221111                1122


Q ss_pred             eccccCcccccc-CCCCcccEEEcc-cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSA-FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss-~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      +.+   + .+.| ||++++|+|+|. .++||+.+...                                      +|+.-
T Consensus        89 ~~~---~-~~~l~~~~~~fD~ii~~~~~~~~~~d~~~--------------------------------------~l~~i  126 (246)
T d2avna1          89 VEA---K-AEDLPFPSGAFEAVLALGDVLSYVENKDK--------------------------------------AFSEI  126 (246)
T ss_dssp             EEC---C-TTSCCSCTTCEEEEEECSSHHHHCSCHHH--------------------------------------HHHHH
T ss_pred             ccc---c-ccccccccccccceeeecchhhhhhhHHH--------------------------------------HHHHH
Confidence            322   4 3445 899999999985 68999866333                                      34556


Q ss_pred             HhhhccCCeEEEEecc
Q 016644          223 SKEMKRCGSMFLVCLG  238 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g  238 (385)
                      .+-|+|||.+++++..
T Consensus       127 ~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         127 RRVLVPDGLLIATVDN  142 (246)
T ss_dssp             HHHEEEEEEEEEEEEB
T ss_pred             HhhcCcCcEEEEEECC
Confidence            7899999999998853

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.63  E-value=3.1e-08  Score=89.46  Aligned_cols=108  Identities=18%  Similarity=0.211  Sum_probs=72.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ++-+|+|+|||+|..|+.+.        +.         -.+|+--|+.........+..+.           ...+.-|
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~--------~~---------g~~v~GvD~S~~ml~~A~~~~~~-----------~~~~v~~   88 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLC--------PK---------FKNTWAVDLSQEMLSEAENKFRS-----------QGLKPRL   88 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHG--------GG---------SSEEEEECSCHHHHHHHHHHHHH-----------TTCCCEE
T ss_pred             CCCeEEEEeCcCCHHHHHHH--------Hh---------CCccEeeccchhhhhhccccccc-----------cCcccee
Confidence            45789999999999888775        11         25788889876655544332221           0011113


Q ss_pred             eccccCccccccCCCCcccEEEcc-cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSA-FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss-~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      +.+   +. ..+-+++++|+|+|. .+++|+...                                   +|+..+|+..+
T Consensus        89 ~~~---d~-~~~~~~~~fD~i~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~  129 (246)
T d1y8ca_          89 ACQ---DI-SNLNINRKFDLITCCLDSTNYIIDS-----------------------------------DDLKKYFKAVS  129 (246)
T ss_dssp             ECC---CG-GGCCCSCCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHH
T ss_pred             ecc---ch-hhhcccccccccceeeeeeeccCCH-----------------------------------HHHHHHHHHHH
Confidence            333   53 334457899999986 678886541                                   35677889999


Q ss_pred             hhhccCCeEEEEeccC
Q 016644          224 KEMKRCGSMFLVCLGR  239 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~  239 (385)
                      +-|+|||+|++.+...
T Consensus       130 ~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_         130 NHLKEGGVFIFDINSY  145 (246)
T ss_dssp             TTEEEEEEEEEEEECH
T ss_pred             HhCCCCeEEEEEeCCH
Confidence            9999999999876543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.8e-07  Score=83.81  Aligned_cols=153  Identities=11%  Similarity=0.040  Sum_probs=98.2

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCc--hhH-----hhhc
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSS--MEE-----CLAS  137 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~--~~~-----~~~~  137 (385)
                      +..+|+|+|||+|.+++.+.+                 .-.+|+--|+...--...++........  ...     ..+.
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~-----------------~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFAD-----------------RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHH-----------------TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHh-----------------CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            457999999999999998862                 1378898898876655555554321000  000     0000


Q ss_pred             CcCCceeeccccCccccc-cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHH
Q 016644          138 DTHRSYFAAGVPGSFYRR-LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLA  216 (385)
Q Consensus       138 ~~~~~~f~~~vpgSFy~r-LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~  216 (385)
                      .....-|.+   ++++.- -.+.+++|++++..++|.+..  ..                                  ..
T Consensus       108 ~~~~v~~~~---~d~~~l~~~~~~~fd~i~~~~~l~~~~~--~~----------------------------------r~  148 (229)
T d2bzga1         108 SSGNISLYC---CSIFDLPRTNIGKFDMIWDRGALVAINP--GD----------------------------------RK  148 (229)
T ss_dssp             TTSSEEEEE---SCGGGGGGSCCCCEEEEEESSSTTTSCG--GG----------------------------------HH
T ss_pred             cCCcEEEEE---cchhhccccccCceeEEEEEEEEEeccc--hh----------------------------------hH
Confidence            000111222   244433 377899999999999999742  21                                  23


Q ss_pred             HHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHH
Q 016644          217 AFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVE  296 (385)
Q Consensus       217 ~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le  296 (385)
                      .+++.-++-|+|||++++..+.....                                   ...-|-|.-+.+|++.++.
T Consensus       149 ~~~~~~~~~LkpgG~~~l~~~~~~~~-----------------------------------~~~gpp~~~~~~el~~lf~  193 (229)
T d2bzga1         149 CYADTMFSLLGKKFQYLLCVLSYDPT-----------------------------------KHPGPPFYVPHAEIERLFG  193 (229)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEEECCTT-----------------------------------TCCCSSCCCCHHHHHHHHT
T ss_pred             HHHHHHHhhcCCcceEEEEEcccCCC-----------------------------------CCCCCCCCCCHHHHHHHhc
Confidence            34456789999999999988776311                                   0012557779999999995


Q ss_pred             hcCceEecEEEEEe
Q 016644          297 ANGSFVINKLEVFK  310 (385)
Q Consensus       297 ~~gsF~i~~le~~~  310 (385)
                      . + |+|+.+|..+
T Consensus       194 ~-~-~~i~~le~~~  205 (229)
T d2bzga1         194 K-I-CNIRCLEKVD  205 (229)
T ss_dssp             T-T-EEEEEEEEEE
T ss_pred             C-C-CEEEEEEEec
Confidence            3 4 9999998876

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.58  E-value=1.8e-08  Score=88.43  Aligned_cols=107  Identities=18%  Similarity=0.245  Sum_probs=72.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      +-+|+|+|||+|.+++.+.+        +         -.+|+--|+.......+-+....           .....+  
T Consensus        31 ~grvLDiGcG~G~~~~~la~--------~---------g~~v~gvD~s~~~l~~a~~~~~~-----------~~~~~~--   80 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAA--------N---------GYDVTAWDKNPASMANLERIKAA-----------EGLDNL--   80 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHH-----------TTCTTE--
T ss_pred             CCcEEEECCCCCHHHHHHHH--------H---------hhhhccccCcHHHHHHHHHHhhh-----------ccccch--
Confidence            45899999999999997752        1         25778888866555543222110           011121  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ...-++ ..++.|++++|+|+|+.++|++..   .                                 ++..+|+.-++-
T Consensus        81 ~~~~~d-~~~~~~~~~fD~I~~~~~~~~~~~---~---------------------------------~~~~~l~~~~~~  123 (198)
T d2i6ga1          81 QTDLVD-LNTLTFDGEYDFILSTVVMMFLEA---Q---------------------------------TIPGLIANMQRC  123 (198)
T ss_dssp             EEEECC-TTTCCCCCCEEEEEEESCGGGSCT---T---------------------------------HHHHHHHHHHHT
T ss_pred             hhhhee-cccccccccccEEEEeeeeecCCH---H---------------------------------HHHHHHHHHHHH
Confidence            112224 455668899999999999999743   1                                 245577888999


Q ss_pred             hccCCeEEEEeccC
Q 016644          226 MKRCGSMFLVCLGR  239 (385)
Q Consensus       226 L~pGG~lvl~~~g~  239 (385)
                      |+|||++++..+..
T Consensus       124 L~pgG~~~~~~~~~  137 (198)
T d2i6ga1         124 TKPGGYNLIVAAMD  137 (198)
T ss_dssp             EEEEEEEEEEEEBC
T ss_pred             cCCCcEEEEEEecC
Confidence            99999999987654

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.54  E-value=3.3e-07  Score=83.58  Aligned_cols=149  Identities=19%  Similarity=0.271  Sum_probs=95.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ..-+|+|+|||+|..++.++        +++       |.++++.-|||.     ....-..             ...  
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~-----vi~~~~~-------------~~r--  125 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELII--------SKY-------PLIKGINFDLPQ-----VIENAPP-------------LSG--  125 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHH-----HHTTCCC-------------CTT--
T ss_pred             CCcEEEEecCCCcHHHHHHH--------HHC-------CCCeEEEecchh-----hhhccCC-------------CCC--
Confidence            45789999999999888877        444       889999999984     1111110             112  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +..++|+|++.+ |..  |+++.+..||..++-                                    +-.+.|+..++
T Consensus       126 i~~~~gd~~~~~-p~~--D~~~l~~vLh~~~de------------------------------------~~~~iL~~~~~  166 (244)
T d1fp1d2         126 IEHVGGDMFASV-PQG--DAMILKAVCHNWSDE------------------------------------KCIEFLSNCHK  166 (244)
T ss_dssp             EEEEECCTTTCC-CCE--EEEEEESSGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             eEEecCCccccc-ccc--eEEEEehhhhhCCHH------------------------------------HHHHHHHHHHH
Confidence            335788999764 644  999999999975431                                    22356777889


Q ss_pred             hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHH--HHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644          225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWN--DLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV  302 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~--~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~  302 (385)
                      .|+|||++++.=.-.++....      ... ..+...+.  -|+.-|             -..+|.+|+++++++.| |+
T Consensus       167 aL~pgg~llI~e~v~~~~~~~------~~~-~~~~~~~d~~m~~~~~-------------g~ert~~e~~~ll~~AG-F~  225 (244)
T d1fp1d2         167 ALSPNGKVIIVEFILPEEPNT------SEE-SKLVSTLDNLMFITVG-------------GRERTEKQYEKLSKLSG-FS  225 (244)
T ss_dssp             HEEEEEEEEEEEEEECSSCCS------SHH-HHHHHHHHHHHHHHHS-------------CCCEEHHHHHHHHHHTT-CS
T ss_pred             HcCCCcEEEEEEEEecCCCCC------chH-HHHHHHHHHHHHhhCC-------------CcCCCHHHHHHHHHHcC-CC
Confidence            999999998876554321110      110 11111111  122211             12368999999999999 98


Q ss_pred             ecEEEE
Q 016644          303 INKLEV  308 (385)
Q Consensus       303 i~~le~  308 (385)
                      ..++..
T Consensus       226 ~v~v~~  231 (244)
T d1fp1d2         226 KFQVAC  231 (244)
T ss_dssp             EEEEEE
T ss_pred             ceEEEe
Confidence            766543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.52  E-value=2e-08  Score=93.40  Aligned_cols=107  Identities=17%  Similarity=0.145  Sum_probs=69.2

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      .++.+|+|+|||+|..+..+..        .+      ++..+|+.-|+..+.....-+.....           ..+.-
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~--------~~------~~~~~v~giD~s~~~l~~a~~~~~~~-----------~~~~~   80 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMP--------LL------PEGSKYTGIDSGETLLAEARELFRLL-----------PYDSE   80 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTT--------TS------CTTCEEEEEECCHHHHHHHHHHHHSS-----------SSEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHH--------hC------CCCCEEEEEecchhHhhhhhcccccc-----------ccccc
Confidence            4679999999999998877752        11      12367888888654444332222110           01112


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |..+   ++ ..+-+++++|+|+|+.++||+++...                                      +|+.-.
T Consensus        81 f~~~---d~-~~~~~~~~fD~v~~~~~l~~~~d~~~--------------------------------------~l~~~~  118 (281)
T d2gh1a1          81 FLEG---DA-TEIELNDKYDIAICHAFLLHMTTPET--------------------------------------MLQKMI  118 (281)
T ss_dssp             EEES---CT-TTCCCSSCEEEEEEESCGGGCSSHHH--------------------------------------HHHHHH
T ss_pred             cccc---cc-ccccccCCceEEEEehhhhcCCCHHH--------------------------------------HHHHHH
Confidence            3333   53 34534678999999999999976333                                      235567


Q ss_pred             hhhccCCeEEEEec
Q 016644          224 KEMKRCGSMFLVCL  237 (385)
Q Consensus       224 ~EL~pGG~lvl~~~  237 (385)
                      +-|||||++++.-+
T Consensus       119 ~~LkpgG~lii~~~  132 (281)
T d2gh1a1         119 HSVKKGGKIICFEP  132 (281)
T ss_dssp             HTEEEEEEEEEEEC
T ss_pred             HHcCcCcEEEEEEC
Confidence            89999999988764

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.49  E-value=2.2e-07  Score=84.31  Aligned_cols=111  Identities=16%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +.-+|+|+|||+|..+..+..        .        ..-+|+--|+.........+.....          ....++ 
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~--------~--------~~~~v~GiD~S~~~l~~A~~r~~~~----------~~~~~v~   77 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYER--------A--------GIGEYYGVDIAEVSINDARVRARNM----------KRRFKVF   77 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHH--------H--------TCSEEEEEESCHHHHHHHHHHHHTS----------CCSSEEE
T ss_pred             CcCEEEEecccCcHHHHHHHH--------c--------CCCeEEEecCCHHHHHHHHHHHHhc----------CCCcceE
Confidence            447899999999998776641        1        1246888898766555443322110          011122 


Q ss_pred             eeccccCcccc-ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYR-RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~-rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      |..+   +-+. .+.+.+++|+|+|..++||+-..+                                  +|+..+|+..
T Consensus        78 f~~~---D~~~~~~~~~~~fD~V~~~~~l~~~~~~~----------------------------------~~~~~~l~~i  120 (252)
T d1ri5a_          78 FRAQ---DSYGRHMDLGKEFDVISSQFSFHYAFSTS----------------------------------ESLDIAQRNI  120 (252)
T ss_dssp             EEES---CTTTSCCCCSSCEEEEEEESCGGGGGSSH----------------------------------HHHHHHHHHH
T ss_pred             EEEc---chhhhcccccccceEEEEcceeeecCCCH----------------------------------HHHHHHHHHH
Confidence            3332   3333 344788999999999999975432                                  3567788889


Q ss_pred             HhhhccCCeEEEEecc
Q 016644          223 SKEMKRCGSMFLVCLG  238 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g  238 (385)
                      ++-|+|||+|+++++.
T Consensus       121 ~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         121 ARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             HHTEEEEEEEEEEEEC
T ss_pred             hceeCCCCEEEEEecC
Confidence            9999999999998753

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=2.8e-07  Score=81.86  Aligned_cols=112  Identities=15%  Similarity=0.173  Sum_probs=73.3

Q ss_pred             EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-eec
Q 016644           68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-FAA  146 (385)
Q Consensus        68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~~  146 (385)
                      .|+|+|||+|.+++.+.        +..       |+..++--|+-.+-...+.+....           ....++ |+.
T Consensus        32 lvLeIGcG~G~~~~~lA--------~~~-------p~~~~iGiD~~~~~i~~a~~~~~~-----------~~l~Nv~~~~   85 (204)
T d2fcaa1          32 IHIEVGTGKGQFISGMA--------KQN-------PDINYIGIELFKSVIVTAVQKVKD-----------SEAQNVKLLN   85 (204)
T ss_dssp             EEEEECCTTSHHHHHHH--------HHC-------TTSEEEEECSCHHHHHHHHHHHHH-----------SCCSSEEEEC
T ss_pred             eEEEEEecCcHHHHHHH--------HhC-------CCCcEEEeecchHHHHHHHHHHHH-----------HhccCchhcc
Confidence            58999999999998886        222       889999999865555544333211           112344 333


Q ss_pred             cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644          147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM  226 (385)
Q Consensus       147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL  226 (385)
                      + .....-+.||++++|.++..+...|..+.-..-           ++    .               ...||..-++-|
T Consensus        86 ~-Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~-----------Rl----~---------------~~~~l~~~~r~L  134 (204)
T d2fcaa1          86 I-DADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKR-----------RL----T---------------YSHFLKKYEEVM  134 (204)
T ss_dssp             C-CGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGG-----------ST----T---------------SHHHHHHHHHHH
T ss_pred             c-chhhhhcccCchhhhccccccccccchhhhcch-----------hh----h---------------HHHHHHHHHHhC
Confidence            2 222233569999999999999999965421110           10    0               134667788999


Q ss_pred             ccCCeEEEEe
Q 016644          227 KRCGSMFLVC  236 (385)
Q Consensus       227 ~pGG~lvl~~  236 (385)
                      ||||.|++.+
T Consensus       135 kpgG~l~i~T  144 (204)
T d2fcaa1         135 GKGGSIHFKT  144 (204)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9999998865

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.27  E-value=1e-05  Score=73.12  Aligned_cols=148  Identities=20%  Similarity=0.257  Sum_probs=90.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ..-+|+|+|||+|..++.++        +++       |.++++.-|||.-        +...          .....  
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------i~~~----------~~~~r--  125 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIV--------SKY-------PTIKGINFDLPHV--------IEDA----------PSYPG--  125 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHH--------HHC-------TTSEEEEEECTTT--------TTTC----------CCCTT--
T ss_pred             CCcEEEEecCCCcHHHHHHH--------HHC-------CCCeEEEcccHHh--------hhhc----------ccCCc--
Confidence            35689999999999988887        444       7899999999962        2111          00112  


Q ss_pred             eccccCccccccCCCCcccEEEcccccc-cccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLH-WLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alH-WLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      +..++++|++.+ |..  |+.+-.+.+| |    +.                                 +|...+|+..+
T Consensus       126 ~~~~~~d~~~~~-P~a--d~~~l~~vlh~~----~d---------------------------------~~~~~iL~~~~  165 (243)
T d1kyza2         126 VEHVGGDMFVSI-PKA--DAVFMKWICHDW----SD---------------------------------EHCLKFLKNCY  165 (243)
T ss_dssp             EEEEECCTTTCC-CCC--SCEECSSSSTTS----CH---------------------------------HHHHHHHHHHH
T ss_pred             eEEecccccccC-CCc--ceEEEEEEeecC----CH---------------------------------HHHHHHHHHHH
Confidence            335778998864 765  4444455555 4    11                                 23456778889


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH---HHHcCCcccccccccccccccCCHHHHHHHHHhcCc
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND---LVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGS  300 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~---mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gs  300 (385)
                      +.|+|||++++.=.-..+....      ..  ......+.+   |+..            .--..+|.+|+++++++.| 
T Consensus       166 ~al~pgg~~li~d~~~~~~~~~------~~--~~~~~~~~d~~ml~~~------------~~g~ert~~e~~~ll~~AG-  224 (243)
T d1kyza2         166 EALPDNGKVIVAECILPVAPDS------SL--ATKGVVHIDVIMLAHN------------PGGKERTQKEFEDLAKGAG-  224 (243)
T ss_dssp             HHCCSSSCEEEEECEECSSCCC------CH--HHHHHHHHHHHHHHHC------------SSCCCEEHHHHHHHHHHHC-
T ss_pred             HhcCCCceEEEEEEEecCCCCC------ch--hhHHHHHHHHHHHhhC------------CCCCcCCHHHHHHHHHHcC-
Confidence            9999999998764332211000      11  112222333   2221            0112478999999999999 


Q ss_pred             eEecEEEE
Q 016644          301 FVINKLEV  308 (385)
Q Consensus       301 F~i~~le~  308 (385)
                      |+..++..
T Consensus       225 f~~vkv~~  232 (243)
T d1kyza2         225 FQGFKVHC  232 (243)
T ss_dssp             CSCEEEEE
T ss_pred             CCcEEEEE
Confidence            98877653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.25  E-value=8.4e-07  Score=80.09  Aligned_cols=109  Identities=11%  Similarity=0.028  Sum_probs=67.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|||+|||+|..+..+.+ +       .       |.-+||--|+..-....+-.....            ..+..+
T Consensus        74 pG~~VLDlGcGsG~~~~~la~-~-------~-------~~g~V~aVDiS~~~i~~a~~~a~~------------~~ni~~  126 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVAD-I-------A-------DKGIVYAIEYAPRIMRELLDACAE------------RENIIP  126 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHH-H-------T-------TTSEEEEEESCHHHHHHHHHHTTT------------CTTEEE
T ss_pred             CCCEEEEeCEEcCHHHHHHHH-h-------C-------CCCEEEEEeCcHHHHHHHHHHHhh------------hcccce
Confidence            458999999999998887763 2       1       556889888864333333222211            112223


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +.+...  .-.-.++.+.|+.++...+||..+..                                      .+++...+
T Consensus       127 i~~d~~--~~~~~~~~~~~v~~i~~~~~~~~~~~--------------------------------------~~l~~~~r  166 (230)
T d1g8sa_         127 ILGDAN--KPQEYANIVEKVDVIYEDVAQPNQAE--------------------------------------ILIKNAKW  166 (230)
T ss_dssp             EECCTT--CGGGGTTTCCCEEEEEECCCSTTHHH--------------------------------------HHHHHHHH
T ss_pred             EEEeec--cCcccccccceeEEeeccccchHHHH--------------------------------------HHHHHHHH
Confidence            333222  22234566778878877787754422                                      33455678


Q ss_pred             hhccCCeEEEEeccCC
Q 016644          225 EMKRCGSMFLVCLGRT  240 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~  240 (385)
                      -|+|||+++++...+.
T Consensus       167 ~LKpgG~~~i~~k~~~  182 (230)
T d1g8sa_         167 FLKKGGYGMIAIKARS  182 (230)
T ss_dssp             HEEEEEEEEEEEEGGG
T ss_pred             hcccCceEEEEeeccc
Confidence            9999999999887664

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.24  E-value=3.7e-06  Score=76.38  Aligned_cols=147  Identities=16%  Similarity=0.225  Sum_probs=94.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ..-+|+|+|||+|..++.+.        +++       |.++++.-|||.     +....+.             ..+  
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~-----vi~~~~~-------------~~r--  124 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIIC--------ETF-------PKLKCIVFDRPQ-----VVENLSG-------------SNN--  124 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHH-----HHTTCCC-------------BTT--
T ss_pred             CceEEEEecCCccHHHHHHH--------HhC-------CCCeEEEecCHH-----HHHhCcc-------------cCc--
Confidence            45689999999999888776        444       889999999983     2222221             112  


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +..++|+|++.. |  ..|+++..+.||-.++.                                    +-.++|+..++
T Consensus       125 v~~~~gD~f~~~-p--~aD~~~l~~vLHdw~d~------------------------------------~~~~iL~~~~~  165 (244)
T d1fp2a2         125 LTYVGGDMFTSI-P--NADAVLLKYILHNWTDK------------------------------------DCLRILKKCKE  165 (244)
T ss_dssp             EEEEECCTTTCC-C--CCSEEEEESCGGGSCHH------------------------------------HHHHHHHHHHH
T ss_pred             eEEEecCcccCC-C--CCcEEEEEeecccCChH------------------------------------HHHHHHHHHHH
Confidence            335778999863 4  46999999999965441                                    23456788899


Q ss_pred             hhccC---CeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHH---HcCCcccccccccccccccCCHHHHHHHHHhc
Q 016644          225 EMKRC---GSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLV---QEGLITGEKRDSFNIPVYASSLQEFKEVVEAN  298 (385)
Q Consensus       225 EL~pG---G~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv---~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~  298 (385)
                      .|+||   |++++.=.-.++. +.     ...  ......+.++.   -.|              ..||.+|+++++++.
T Consensus       166 al~pgg~~~~lli~e~~~~~~-~~-----~~~--~~~~~~~~dl~m~~~~G--------------~ert~~e~~~ll~~A  223 (244)
T d1fp2a2         166 AVTNDGKRGKVTIIDMVIDKK-KD-----ENQ--VTQIKLLMDVNMACLNG--------------KERNEEEWKKLFIEA  223 (244)
T ss_dssp             HHSGGGCCCEEEEEECEECTT-TS-----CHH--HHHHHHHHHHHGGGGTC--------------CCEEHHHHHHHHHHT
T ss_pred             HcCcccCCcEEEEEEeecCCC-CC-----Cch--HHHHHHHHHHHHHhCCC--------------cCCCHHHHHHHHHHc
Confidence            99999   6665543322211 00     011  11123333331   122              357999999999999


Q ss_pred             CceEecEEEE
Q 016644          299 GSFVINKLEV  308 (385)
Q Consensus       299 gsF~i~~le~  308 (385)
                      | |++.++.-
T Consensus       224 G-f~~~~i~~  232 (244)
T d1fp2a2         224 G-FQHYKISP  232 (244)
T ss_dssp             T-CCEEEEEE
T ss_pred             C-CceEEEEE
Confidence            9 98877654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=1.1e-06  Score=78.26  Aligned_cols=83  Identities=10%  Similarity=0.067  Sum_probs=52.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+...+              .+.-.|+..|.-..-....-+.+..          ..-.+..+
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~--------------~~~g~V~~id~~~~~~~~a~~~~~~----------~~~~n~~~  130 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVV--------------GEKGLVVSVEYSRKICEIAKRNVER----------LGIENVIF  130 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEEESCHHHHHHHHHHHHH----------TTCCSEEE
T ss_pred             ccceEEEecCccchhHHHHHHHh--------------CCCCcEEEeecchhhHHHhhhhHhh----------hccccccc
Confidence            45899999999999998776322              1446788888654333333332221          01112233


Q ss_pred             eccccCccccccCCCCcccEEEcccccccc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWL  174 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWL  174 (385)
                      +.   ++..+-+++++++|.|++..+++++
T Consensus       131 ~~---~d~~~~~~~~~~fD~I~~~~~~~~~  157 (213)
T d1dl5a1         131 VC---GDGYYGVPEFSPYDVIFVTVGVDEV  157 (213)
T ss_dssp             EE---SCGGGCCGGGCCEEEEEECSBBSCC
T ss_pred             cc---CchHHccccccchhhhhhhccHHHh
Confidence            33   4655666778899999999999874

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=1e-06  Score=81.51  Aligned_cols=116  Identities=10%  Similarity=0.072  Sum_probs=73.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+|||+|..|+.+.+        .         ..+|+--|+..+.-+..-+......... ...     ...  
T Consensus        57 ~~~vLD~GcG~G~~~~~la~--------~---------g~~v~gvD~S~~ml~~A~~~~~~~~~~~-~~~-----~~~--  111 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVE--------E---------GFSVTSVDASDKMLKYALKERWNRRKEP-AFD-----KWV--  111 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTTSH-HHH-----TCE--
T ss_pred             CCEEEEecCCCcHHHHHHHH--------c---------CCeeeeccCchHHHHHHHHHHHhccccc-ccc-----eee--
Confidence            46899999999999888752        1         2678999987766554433221100000 000     000  


Q ss_pred             ccccCccc---cccCCCCcccEEEcc-cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFY---RRLFPTRSIDFFHSA-FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       146 ~~vpgSFy---~rLfP~~Svd~~~Ss-~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                       ....+|.   ..+.+..++|+|++. .+++++...-...                               .|...+|+.
T Consensus       112 -~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~-------------------------------~~~~~~l~~  159 (292)
T d1xvaa_         112 -IEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQ-------------------------------SEHRLALKN  159 (292)
T ss_dssp             -EEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSS-------------------------------HHHHHHHHH
T ss_pred             -eeeccccccccccCCCCCceEEEEecCchhhcCCcccCh-------------------------------HHHHHHHHH
Confidence             1122333   345567899999875 5888875532221                               357788899


Q ss_pred             HHhhhccCCeEEEEecc
Q 016644          222 RSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g  238 (385)
                      .++-|+|||+|++.+..
T Consensus       160 ~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         160 IASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             HHHTEEEEEEEEEEEEC
T ss_pred             HHHHcCcCcEEEEeecC
Confidence            99999999999998753

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.08  E-value=2.1e-06  Score=76.09  Aligned_cols=112  Identities=13%  Similarity=0.146  Sum_probs=73.3

Q ss_pred             EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-eec
Q 016644           68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-FAA  146 (385)
Q Consensus        68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~~  146 (385)
                      .|+|+|||+|.+++.+..        .+       |+..++--|+-.+-...+.+....           ....++ +..
T Consensus        34 lvLdIGcG~G~~~~~lA~--------~~-------p~~~~iGid~~~~~v~~a~~~~~~-----------~~l~Ni~~~~   87 (204)
T d1yzha1          34 IHVEVGSGKGAFVSGMAK--------QN-------PDINYIGIDIQKSVLSYALDKVLE-----------VGVPNIKLLW   87 (204)
T ss_dssp             EEEEESCTTSHHHHHHHH--------HC-------TTSEEEEEESCHHHHHHHHHHHHH-----------HCCSSEEEEE
T ss_pred             eEEEEeccCCHHHHHHHH--------HC-------CCCceEEEeccHHHHHHHHHhhhh-----------hccccceeee
Confidence            579999999999988863        22       889999999865555544332211           112233 333


Q ss_pred             cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644          147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM  226 (385)
Q Consensus       147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL  226 (385)
                      +-... ..+.||++++|.++..+.-.|-.+....-           ++    .               -..||..-++-|
T Consensus        88 ~da~~-l~~~~~~~~~~~i~i~fPdPw~K~~h~kr-----------Rl----~---------------~~~~l~~~~~~L  136 (204)
T d1yzha1          88 VDGSD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKR-----------RL----T---------------YKTFLDTFKRIL  136 (204)
T ss_dssp             CCSSC-GGGTSCTTCCSEEEEESCCCCCSGGGGGG-----------ST----T---------------SHHHHHHHHHHS
T ss_pred             cCHHH-HhhhccCCceehhcccccccccchhhhhh-----------hh----h---------------HHHHHHHHHHhC
Confidence            32223 34679999999999999999965422110           00    0               135667789999


Q ss_pred             ccCCeEEEEe
Q 016644          227 KRCGSMFLVC  236 (385)
Q Consensus       227 ~pGG~lvl~~  236 (385)
                      +|||.|.+.+
T Consensus       137 kpgG~l~i~T  146 (204)
T d1yzha1         137 PENGEIHFKT  146 (204)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9999998765

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.95  E-value=2.7e-06  Score=74.03  Aligned_cols=106  Identities=13%  Similarity=0.146  Sum_probs=64.9

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +.-+|+|+|||+|..++.+.        +.+       +  +|+..|+-.......-+++..        ... ...++ 
T Consensus        52 ~~~~VLDiGcG~G~~~~~la--------~~~-------~--~v~~iD~s~~~i~~a~~n~~~--------~~l-~~~~i-  104 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALA--------DEV-------K--STTMADINRRAIKLAKENIKL--------NNL-DNYDI-  104 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHG--------GGS-------S--EEEEEESCHHHHHHHHHHHHH--------TTC-TTSCE-
T ss_pred             CCCeEEEEeecCChhHHHHH--------hhc-------c--ccceeeeccccchhHHHHHHH--------hCC-ccceE-
Confidence            45789999999999887664        222       3  567778744333333222110        000 01122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.+++++ -++++++|+|+|+..+|+..+                                     .+..||..-.+
T Consensus       105 -~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~-------------------------------------~~~~~l~~~~~  145 (194)
T d1dusa_         105 -RVVHSDLYE-NVKDRKYNKIITNPPIRAGKE-------------------------------------VLHRIIEEGKE  145 (194)
T ss_dssp             -EEEECSTTT-TCTTSCEEEEEECCCSTTCHH-------------------------------------HHHHHHHHHHH
T ss_pred             -EEEEcchhh-hhccCCceEEEEcccEEecch-------------------------------------hhhhHHHHHHH
Confidence             233456666 568899999999887776321                                     12345666778


Q ss_pred             hhccCCeEEEEe
Q 016644          225 EMKRCGSMFLVC  236 (385)
Q Consensus       225 EL~pGG~lvl~~  236 (385)
                      -|+|||+|++..
T Consensus       146 ~LkpgG~l~i~~  157 (194)
T d1dusa_         146 LLKDNGEIWVVI  157 (194)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             hcCcCcEEEEEE
Confidence            899999998765

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.93  E-value=1.5e-05  Score=73.15  Aligned_cols=129  Identities=12%  Similarity=0.114  Sum_probs=78.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh-cCCCCCCchhHhhhcCcCCce
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ-LLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~-~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      +-.+|+|+|||+|..|+.+...+              .|.-+|+--|.-. ++-...+ ++..       .......+..
T Consensus        96 PG~~VLE~G~GsG~lt~~La~~v--------------gp~G~V~~~d~~~-~~~~~Ar~n~~~-------~~~~~~~nv~  153 (264)
T d1i9ga_          96 PGARVLEAGAGSGALTLSLLRAV--------------GPAGQVISYEQRA-DHAEHARRNVSG-------CYGQPPDNWR  153 (264)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEECSCH-HHHHHHHHHHHH-------HHTSCCTTEE
T ss_pred             CCCEEEecCcCCcHHHHHHHHhh--------------CCCcEEEEecCCH-HHHHHHHHhhhh-------hccCCCceEE
Confidence            35899999999999999997554              1567888778643 3333322 2211       0000011222


Q ss_pred             eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      |..   +++.+.-+|++++|.||.        ++|.+-                                   .+|..-+
T Consensus       154 ~~~---~d~~~~~~~~~~fDaV~l--------dlp~P~-----------------------------------~~l~~~~  187 (264)
T d1i9ga_         154 LVV---SDLADSELPDGSVDRAVL--------DMLAPW-----------------------------------EVLDAVS  187 (264)
T ss_dssp             EEC---SCGGGCCCCTTCEEEEEE--------ESSCGG-----------------------------------GGHHHHH
T ss_pred             EEe---cccccccccCCCcceEEE--------ecCCHH-----------------------------------HHHHHHH
Confidence            333   476666689999999985        244331                                   1124468


Q ss_pred             hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcC-Cccccccc
Q 016644          224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEG-LITGEKRD  277 (385)
Q Consensus       224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG-~i~~e~~d  277 (385)
                      +.|||||+|++..+..                +.+.+.+..|..++ ..+.+.++
T Consensus       188 ~~LkpGG~lv~~~P~i----------------~Qv~~~~~~l~~~~~f~~i~~~E  226 (264)
T d1i9ga_         188 RLLVAGGVLMVYVATV----------------TQLSRIVEALRAKQCWTEPRAWE  226 (264)
T ss_dssp             HHEEEEEEEEEEESSH----------------HHHHHHHHHHHHHSSBCCCEEEC
T ss_pred             hccCCCCEEEEEeCcc----------------ChHHHHHHHHHHcCCeecceEEE
Confidence            9999999998877543                34666777665554 44444433

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.92  E-value=7.8e-06  Score=74.52  Aligned_cols=75  Identities=11%  Similarity=0.092  Sum_probs=45.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHH-HHhcCCCCCCchhHhhhcCcCCcee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNT-LFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~-lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      -.+|+|+|||+|..|+.+...+              .|.-+|+--|.-. +|-. .-+++..+          ....++ 
T Consensus        86 G~rVLEiG~GsG~lt~~la~~v--------------~~~g~V~~vD~~e-~~~~~A~~n~~~~----------~~~~nv-  139 (250)
T d1yb2a1          86 GMDILEVGVGSGNMSSYILYAL--------------NGKGTLTVVERDE-DNLKKAMDNLSEF----------YDIGNV-  139 (250)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHH--------------TTSSEEEEECSCH-HHHHHHHHHHHTT----------SCCTTE-
T ss_pred             cCEEEEeeeeCcHHHHHHHHHh--------------CCCcEEEEEECCH-HHHHHHHHHHHHh----------cCCCce-
Confidence            4899999999999999887544              1556888888643 3333 22233221          011122 


Q ss_pred             eccccCccccccCCCCcccEEEcc
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSA  168 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss  168 (385)
                       ...-+++. ..+|++++|.++..
T Consensus       140 -~~~~~Di~-~~~~~~~fD~V~ld  161 (250)
T d1yb2a1         140 -RTSRSDIA-DFISDQMYDAVIAD  161 (250)
T ss_dssp             -EEECSCTT-TCCCSCCEEEEEEC
T ss_pred             -EEEEeeee-cccccceeeeeeec
Confidence             12224644 45789999999863

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.89  E-value=2.3e-06  Score=78.34  Aligned_cols=74  Identities=18%  Similarity=0.125  Sum_probs=44.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|..++.+.        +.         -.+|+.-|.-...-...-++..           ......-|.
T Consensus       121 g~~VLDiGcGsG~l~i~aa--------~~---------g~~V~gvDis~~av~~A~~na~-----------~n~~~~~~~  172 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAE--------KL---------GGKALGVDIDPMVLPQAEANAK-----------RNGVRPRFL  172 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCGGGHHHHHHHHH-----------HTTCCCEEE
T ss_pred             cCEEEEcccchhHHHHHHH--------hc---------CCEEEEEECChHHHHHHHHHHH-----------HcCCceeEE
Confidence            4699999999999887553        11         2468888986544443333221           111122233


Q ss_pred             ccccCccccccCCCCcccEEEccccc
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSL  171 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~al  171 (385)
                      .+   +. ...+|.+++|+++++...
T Consensus       173 ~~---d~-~~~~~~~~fD~V~ani~~  194 (254)
T d2nxca1         173 EG---SL-EAALPFGPFDLLVANLYA  194 (254)
T ss_dssp             ES---CH-HHHGGGCCEEEEEEECCH
T ss_pred             ec---cc-cccccccccchhhhcccc
Confidence            22   32 346788999999987443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.86  E-value=1.4e-05  Score=70.69  Aligned_cols=42  Identities=17%  Similarity=0.175  Sum_probs=30.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLF  121 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF  121 (385)
                      +-.+|+|+|||+|..+..+. ++       .       |+-+|+--|........+-
T Consensus        56 pg~~VLDlGcG~G~~~~~la-~~-------v-------~~g~V~gvDis~~~i~~a~   97 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLA-DI-------V-------DEGIIYAVEYSAKPFEKLL   97 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHH-HH-------T-------TTSEEEEECCCHHHHHHHH
T ss_pred             CCCEEEEeCCcCCHHHHHHH-Hh-------c-------cCCeEEEEeCCHHHHHHHH
Confidence            35899999999999777664 22       1       4568999998765555443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.86  E-value=3.3e-05  Score=69.20  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=65.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +-.+|+|+|||+|..|..+.+.+              .|.-.||--|+-......+-+.....            .....
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~V--------------G~~G~V~aVD~s~~~l~~a~~~a~~~------------~~~~~  126 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIV--------------GWEGKIFGIEFSPRVLRELVPIVEER------------RNIVP  126 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHH--------------CTTSEEEEEESCHHHHHHHHHHHSSC------------TTEEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHHh--------------CCCCEEEEEeCcHHHHHHHHHHHHhc------------CCceE
Confidence            34899999999999998886433              15578898888654444333322210            11122


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +.+..+.-..--.+..++|++++..+.+     +                                   +-..|+....+
T Consensus       127 i~~d~~~~~~~~~~~~~vD~i~~d~~~~-----~-----------------------------------~~~~~l~~~~~  166 (227)
T d1g8aa_         127 ILGDATKPEEYRALVPKVDVIFEDVAQP-----T-----------------------------------QAKILIDNAEV  166 (227)
T ss_dssp             EECCTTCGGGGTTTCCCEEEEEECCCST-----T-----------------------------------HHHHHHHHHHH
T ss_pred             EEEECCCcccccccccceEEEEEEcccc-----c-----------------------------------hHHHHHHHHHH
Confidence            2232222222224456899988653221     1                                   11234566778


Q ss_pred             hhccCCeEEEEeccCC
Q 016644          225 EMKRCGSMFLVCLGRT  240 (385)
Q Consensus       225 EL~pGG~lvl~~~g~~  240 (385)
                      -|+|||+++++..++.
T Consensus       167 ~LkpgG~lvi~~ka~~  182 (227)
T d1g8aa_         167 YLKRGGYGMIAVKSRS  182 (227)
T ss_dssp             HEEEEEEEEEEEEGGG
T ss_pred             hcccCCeEEEEEECCc
Confidence            9999999999987764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=2.3e-05  Score=73.27  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=65.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+|||+|..|+.+.+        ..       + -+|+.-|...+ ...+-+....          ..-..++  
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~--------~G-------a-~~V~avd~s~~-~~~a~~~~~~----------n~~~~~v--   84 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAK--------AG-------A-RKVIGIECSSI-SDYAVKIVKA----------NKLDHVV--   84 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHH--------TT-------C-SEEEEEECSTT-HHHHHHHHHH----------TTCTTTE--
T ss_pred             cCEEEEEecCCcHHHHHHHH--------hC-------C-CEEEEEcCcHH-HhhhhhHHHH----------hCCcccc--
Confidence            35799999999998887652        11       2 47888886532 2222221110          0001122  


Q ss_pred             ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE  225 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E  225 (385)
                      ..+-|+..+--+|.+++|+++|....|.+-...                                   ++..+|.+|.+-
T Consensus        85 ~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~-----------------------------------~~~~~l~~~~r~  129 (316)
T d1oria_          85 TIIKGKVEEVELPVEKVDIIISEWMGYCLFYES-----------------------------------MLNTVLHARDKW  129 (316)
T ss_dssp             EEEESCTTTCCCSSSCEEEEEECCCBBTBTBTC-----------------------------------CHHHHHHHHHHH
T ss_pred             ceEeccHHHcccccceeEEEeeeeeeeeeccHH-----------------------------------HHHHHHHHHHhc
Confidence            123346444448999999999988877754311                                   245677889999


Q ss_pred             hccCCeEE
Q 016644          226 MKRCGSMF  233 (385)
Q Consensus       226 L~pGG~lv  233 (385)
                      |+|||+++
T Consensus       130 Lkp~G~ii  137 (316)
T d1oria_         130 LAPDGLIF  137 (316)
T ss_dssp             EEEEEEEE
T ss_pred             CCCCeEEE
Confidence            99999986

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=1.2e-05  Score=75.55  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f  144 (385)
                      .-+|+|+|||+|..|+.+.+        ..       . -+|+.-|...  .-...+...         .+.+....+ +
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~--------~G-------a-~~V~avd~s~--~~~~a~~~~---------~~~~~~~~i~~   91 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAK--------HG-------A-KHVIGVDMSS--IIEMAKELV---------ELNGFSDKITL   91 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHH--------TC-------C-SEEEEEESST--HHHHHHHHH---------HHTTCTTTEEE
T ss_pred             cCEEEEeCCCCCHHHHHHHH--------hC-------C-CEEEEEeCCH--HHHHHHHHH---------HHhCccccceE
Confidence            46899999999998877651        11       1 4788888642  222222110         000111122 3


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      +.   ++..+--+|++++|+++|....+.+....                                   ++..++.+|.+
T Consensus        92 i~---~~~~~l~~~~~~~D~i~se~~~~~~~~e~-----------------------------------~~~~~~~a~~r  133 (328)
T d1g6q1_          92 LR---GKLEDVHLPFPKVDIIISEWMGYFLLYES-----------------------------------MMDTVLYARDH  133 (328)
T ss_dssp             EE---SCTTTSCCSSSCEEEEEECCCBTTBSTTC-----------------------------------CHHHHHHHHHH
T ss_pred             EE---eehhhccCcccceeEEEEEecceeeccch-----------------------------------hHHHHHHHHHh
Confidence            33   35444448999999999998888765422                                   24456677889


Q ss_pred             hhccCCeEE
Q 016644          225 EMKRCGSMF  233 (385)
Q Consensus       225 EL~pGG~lv  233 (385)
                      -|+|||+++
T Consensus       134 ~LkpgG~ii  142 (328)
T d1g6q1_         134 YLVEGGLIF  142 (328)
T ss_dssp             HEEEEEEEE
T ss_pred             ccCCCeEEE
Confidence            999999984

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.9e-05  Score=70.40  Aligned_cols=110  Identities=11%  Similarity=-0.002  Sum_probs=59.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|||+|||+|..+..+.        +.       .+ -+++.-|+-......+-+....           ...+..+
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a--------~~-------~~-~~v~~id~s~~~~~~a~~~~~~-----------~~~~~~~  105 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQ--------EA-------PI-DEHWIIECNDGVFQRLRDWAPR-----------QTHKVIP  105 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHH--------TS-------CE-EEEEEEECCHHHHHHHHHHGGG-----------CSSEEEE
T ss_pred             CCCeEEEeeccchHHHHHHH--------Hc-------CC-CeEEEeCCCHHHHHHHHHHhhh-----------ccccccc
Confidence            34799999999998776664        11       13 5678888754333333222211           0011111


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      ..+ .......-+|++++|+++.-......  ....                               ..|...||+...+
T Consensus       106 ~~~-~~~~~~~~~~~~~fD~i~fD~~~~~~--~~~~-------------------------------~~~~~~~~~~~~r  151 (229)
T d1zx0a1         106 LKG-LWEDVAPTLPDGHFDGILYDTYPLSE--ETWH-------------------------------THQFNFIKNHAFR  151 (229)
T ss_dssp             EES-CHHHHGGGSCTTCEEEEEECCCCCBG--GGTT-------------------------------THHHHHHHHTHHH
T ss_pred             ccc-cccccccccccccccceeeccccccc--cccc-------------------------------ccCHHHHHHHHHH
Confidence            111 11222333788999998732211110  0000                               1245567777889


Q ss_pred             hhccCCeEEEE
Q 016644          225 EMKRCGSMFLV  235 (385)
Q Consensus       225 EL~pGG~lvl~  235 (385)
                      -|||||+|++.
T Consensus       152 ~LkpGG~~~~~  162 (229)
T d1zx0a1         152 LLKPGGVLTYC  162 (229)
T ss_dssp             HEEEEEEEEEC
T ss_pred             HcCCCcEEEEE
Confidence            99999999763

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.7e-05  Score=70.79  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=63.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +.-+|+|+|||+|..++.+.+        ..       + -+|+..|...+-.  ..+..-         .+.+....+.
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~--------~G-------a-~~V~aid~s~~~~--~a~~~~---------~~~~~~~~i~   87 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAK--------AG-------A-KKVLGVDQSEILY--QAMDII---------RLNKLEDTIT   87 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------TT-------C-SEEEEEESSTHHH--HHHHHH---------HHTTCTTTEE
T ss_pred             CcCEEEEECCCCCHHHHHHHH--------cC-------C-CEEEEEeCHHHHH--HHHHHH---------HHhCCCccce
Confidence            346899999999998887652        11       2 5789889754321  111110         0001112221


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                        -+.++..+--+|+.++|+++|....|-+...  .                                 .+..++.+|.+
T Consensus        88 --~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e--~---------------------------------~~~~~~~a~~~  130 (311)
T d2fyta1          88 --LIKGKIEEVHLPVEKVDVIISEWMGYFLLFE--S---------------------------------MLDSVLYAKNK  130 (311)
T ss_dssp             --EEESCTTTSCCSCSCEEEEEECCCBTTBTTT--C---------------------------------HHHHHHHHHHH
T ss_pred             --EEEeeHHHhcCccccceEEEEeeeeeecccc--c---------------------------------ccHHHHHHHHh
Confidence              2334533333789999999998777654331  1                                 14456677889


Q ss_pred             hhccCCeEE
Q 016644          225 EMKRCGSMF  233 (385)
Q Consensus       225 EL~pGG~lv  233 (385)
                      -|+|||+++
T Consensus       131 ~Lkp~G~ii  139 (311)
T d2fyta1         131 YLAKGGSVY  139 (311)
T ss_dssp             HEEEEEEEE
T ss_pred             cCCCCcEEe
Confidence            999999997

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=9.4e-06  Score=72.61  Aligned_cols=92  Identities=13%  Similarity=-0.025  Sum_probs=53.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+..-+              .|.-+|+--|.-..-....-+.+...  .+ ....   ..++ 
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~--------------~~~g~V~~ie~~~~l~~~a~~~l~~~--~~-~~~~---~~~~-  134 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMV--------------GCTGKVIGIDHIKELVDDSVNNVRKD--DP-TLLS---SGRV-  134 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH--------------CTTCEEEEEESCHHHHHHHHHHHHHH--CT-HHHH---TSSE-
T ss_pred             CCCeEEEecCCCCHHHHHHHHHh--------------CCCceEEEEcCCHHHHHHHHHhcccc--Cc-cccc---ccce-
Confidence            34799999999999998775322              14567887777543333322222110  00 0000   0111 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESA  181 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l  181 (385)
                       ..+-|+-+.-.++.+++|.|++..++++   +|..+
T Consensus       135 -~~~~gD~~~~~~~~~~fD~I~~~~~~~~---ip~~l  167 (224)
T d1i1na_         135 -QLVVGDGRMGYAEEAPYDAIHVGAAAPV---VPQAL  167 (224)
T ss_dssp             -EEEESCGGGCCGGGCCEEEEEECSBBSS---CCHHH
T ss_pred             -EEEEeecccccchhhhhhhhhhhcchhh---cCHHH
Confidence             1223455666678889999999999886   46554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.57  E-value=5.4e-05  Score=65.08  Aligned_cols=104  Identities=18%  Similarity=0.135  Sum_probs=64.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +--+|+|+|||+|..|+.+.        +.+         -+|+.-|.-.+.-...-+++...          .-..++ 
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA--------~~~---------~~V~avD~~~~~l~~a~~n~~~~----------gl~~~v-   84 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELA--------GRV---------RRVYAIDRNPEAISTTEMNLQRH----------GLGDNV-   84 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------TTS---------SEEEEEESCHHHHHHHHHHHHHT----------TCCTTE-
T ss_pred             CCCEEEEEECCeEccccccc--------ccc---------eEEEEecCCHHHHHHHHHHHHHc----------CCCcce-
Confidence            45789999999999998764        111         36788887554444443333210          001122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                       ..+.|++.+-+++..++|++++.-..+   .                                      +..++..-.+
T Consensus        85 -~~~~gda~~~~~~~~~~D~v~~~~~~~---~--------------------------------------~~~~~~~~~~  122 (186)
T d1l3ia_          85 -TLMEGDAPEALCKIPDIDIAVVGGSGG---E--------------------------------------LQEILRIIKD  122 (186)
T ss_dssp             -EEEESCHHHHHTTSCCEEEEEESCCTT---C--------------------------------------HHHHHHHHHH
T ss_pred             -EEEECchhhcccccCCcCEEEEeCccc---c--------------------------------------chHHHHHHHH
Confidence             123457777778889999999753211   1                                      1223455677


Q ss_pred             hhccCCeEEEEecc
Q 016644          225 EMKRCGSMFLVCLG  238 (385)
Q Consensus       225 EL~pGG~lvl~~~g  238 (385)
                      .|+|||+|++....
T Consensus       123 ~LkpgG~lvi~~~~  136 (186)
T d1l3ia_         123 KLKPGGRIIVTAIL  136 (186)
T ss_dssp             TEEEEEEEEEEECB
T ss_pred             HhCcCCEEEEEeec
Confidence            89999999887643

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=4.4e-05  Score=70.31  Aligned_cols=126  Identities=12%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      ++.+|+|+|||||.-++.+....               |..+|+..|.-..=.+..-++...        .   ...++ 
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~---------------p~~~v~avDis~~Al~~A~~Na~~--------~---~~~~v-  160 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASER---------------PDCEIIAVDRMPDAVSLAQRNAQH--------L---AIKNI-  160 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHC---------------TTSEEEEECSSHHHHHHHHHHHHH--------H---TCCSE-
T ss_pred             cccceeeeehhhhHHHHHHHhhC---------------CcceeeeccchhHHHhHHHHHHHH--------h---Ccccc-
Confidence            56889999999999988876322               678999999854333332222210        0   11222 


Q ss_pred             eccccCccccccCCCCcccEEEcccccc----cccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLH----WLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG  220 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alH----WLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~  220 (385)
                       ..+-+++++.+ +.+++|+++|+=-.-    | ...|..+......+...         .       .---..+..|+.
T Consensus       161 -~~~~~d~~~~~-~~~~fDlIvsNPPYi~~~~~-~~~~~v~~~eP~~AL~~---------g-------~dGl~~~~~i~~  221 (274)
T d2b3ta1         161 -HILQSDWFSAL-AGQQFAMIVSNPPYIDEQDP-HLQQGDVRFEPLTALVA---------A-------DSGMADIVHIIE  221 (274)
T ss_dssp             -EEECCSTTGGG-TTCCEEEEEECCCCBCTTCH-HHHSSGGGSSCSTTTBC---------H-------HHHTHHHHHHHH
T ss_pred             -eeeeccccccc-CCCceeEEEecchhhhhhhh-cccccccccchhhhccc---------c-------cccchHHHHHHH
Confidence             12445777764 678999999981100    0 00001110000111100         0       111233456667


Q ss_pred             HHHhhhccCCeEEEEe
Q 016644          221 ARSKEMKRCGSMFLVC  236 (385)
Q Consensus       221 ~Ra~EL~pGG~lvl~~  236 (385)
                      .-.+-|+|||.|++.+
T Consensus       222 ~a~~~L~~~G~l~lEi  237 (274)
T d2b3ta1         222 QSRNALVSGGFLLLEH  237 (274)
T ss_dssp             HHGGGEEEEEEEEEEC
T ss_pred             HHHHhcCCCCEEEEEE
Confidence            7788899999999986

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=9.3e-05  Score=67.69  Aligned_cols=36  Identities=11%  Similarity=0.066  Sum_probs=27.5

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      +-.+|+|+|||+|..|+.+...+              .|.-+|+--|.-.
T Consensus       103 pG~~VLDiG~GsG~lt~~lA~~~--------------~~~G~V~~vD~~~  138 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLARAV--------------GSSGKVFAYEKRE  138 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHT--------------TTTCEEEEECCCH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHh--------------CCCcEEEEEeCCH
Confidence            45899999999999999886333              1456888888754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=2.8e-05  Score=75.48  Aligned_cols=51  Identities=18%  Similarity=0.167  Sum_probs=34.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchH
Q 016644           47 LLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFN  118 (385)
Q Consensus        47 ~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn  118 (385)
                      .+.+.++.+..      .+..+|+|+|||+|..++.+....               +.-+++--|+..+.-.
T Consensus       204 ~i~~Il~~l~L------kpgd~fLDLGCG~G~~vl~aA~~~---------------g~~~v~GIDiS~~~i~  254 (406)
T d1u2za_         204 FLSDVYQQCQL------KKGDTFMDLGSGVGNCVVQAALEC---------------GCALSFGCEIMDDASD  254 (406)
T ss_dssp             HHHHHHHHTTC------CTTCEEEEESCTTSHHHHHHHHHH---------------CCSEEEEEECCHHHHH
T ss_pred             HHHHHHHHhCC------CCCCEEEeCCCCCcHHHHHHHHHc---------------CCCeEEEEeCCHHHHH
Confidence            44445555543      234789999999999998886433               4357888888754433

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.37  E-value=0.00014  Score=64.79  Aligned_cols=82  Identities=12%  Similarity=-0.017  Sum_probs=45.1

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||+|..|..+. .+       .         -+|+--|.-..-....-+.+..            ..+.-+
T Consensus        70 ~g~~VLdIG~GsGy~ta~La-~l-------~---------~~V~aiE~~~~~~~~A~~~~~~------------~~nv~~  120 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTALIA-EI-------V---------DKVVSVEINEKMYNYASKLLSY------------YNNIKL  120 (224)
T ss_dssp             TTCEEEEECCTTSHHHHHHH-HH-------S---------SEEEEEESCHHHHHHHHHHHTT------------CSSEEE
T ss_pred             ccceEEEecCCCCHHHHHHH-HH-------h---------cccccccccHHHHHHHHHHHhc------------cccccc
Confidence            45799999999999987654 22       1         2455555432222222222211            011123


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESA  181 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l  181 (385)
                      ..   ++.+.-....+.+|.|+...++++   +|..+
T Consensus       121 ~~---~d~~~g~~~~~pfD~Iiv~~a~~~---ip~~l  151 (224)
T d1vbfa_         121 IL---GDGTLGYEEEKPYDRVVVWATAPT---LLCKP  151 (224)
T ss_dssp             EE---SCGGGCCGGGCCEEEEEESSBBSS---CCHHH
T ss_pred             cc---CchhhcchhhhhHHHHHhhcchhh---hhHHH
Confidence            32   243333344577999999988765   46554

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0001  Score=69.35  Aligned_cols=36  Identities=14%  Similarity=0.047  Sum_probs=25.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN  115 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N  115 (385)
                      +..+|+|+|||+|..++.+..        .+       +...++--|+-.+
T Consensus       151 ~~~~vlD~GcG~G~~~~~~a~--------~~-------~~~~~~Gid~s~~  186 (328)
T d1nw3a_         151 DDDLFVDLGSGVGQVVLQVAA--------AT-------NCKHHYGVEKADI  186 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------HC-------CCSEEEEEECSHH
T ss_pred             CCCEEEEcCCCCCHHHHHHHH--------Hh-------CCCeEEEEeCCHH
Confidence            357899999999998887652        21       3346777887543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.91  E-value=0.00048  Score=59.52  Aligned_cols=44  Identities=16%  Similarity=0.263  Sum_probs=28.1

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS  114 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~  114 (385)
                      .++++|.+.|||||-=.-.+.-.    +.+...   .....++++..|.-.
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~----l~e~~~---~~~~~~~I~atDi~~   66 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAIT----LADALG---MAPGRWKVFASDIDT   66 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHH----HHHHHC---SCTTSEEEEEEESCH
T ss_pred             CCCeEEEEeCCCCchhHHHHHHH----HHHhhh---hcCCceEEEeecCCh
Confidence            46799999999999855443321    222221   122468999999843

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.83  E-value=0.0007  Score=60.04  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=50.4

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||||..|..+. .++       ...+ ..+..+|+--|.-..-+....+.+..     ...... ...++ 
T Consensus        80 ~g~~VLeIGtGsGY~ta~la-~l~-------g~~g-~~~~~~V~~iE~~~~l~~~a~~~l~~-----~~~~~~-~~~nv-  143 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFY-RYI-------KAKG-VDADTRIVGIEHQAELVRRSKANLNT-----DDRSML-DSGQL-  143 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHH-HHH-------HHSC-CCTTCEEEEEESCHHHHHHHHHHHHH-----HHHHHH-HHTSE-
T ss_pred             CCCeEEEecCCCCHHHHHHH-HHh-------hhcc-CCcccEEEEEecCHHHHHHHHHhhhh-----cchhhc-CccEE-
Confidence            45799999999999998874 222       1111 11234566555421111111111210     000000 01122 


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESA  181 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l  181 (385)
                       ..+-|+.++-..+.+.+|.|+...+++   ++|..+
T Consensus       144 -~~~~~d~~~~~~~~~~fD~Iiv~~a~~---~~p~~l  176 (223)
T d1r18a_         144 -LIVEGDGRKGYPPNAPYNAIHVGAAAP---DTPTEL  176 (223)
T ss_dssp             -EEEESCGGGCCGGGCSEEEEEECSCBS---SCCHHH
T ss_pred             -EEEecccccccccccceeeEEEEeech---hchHHH
Confidence             122346556667788999999999974   667654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0008  Score=63.03  Aligned_cols=34  Identities=9%  Similarity=0.171  Sum_probs=26.6

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCC
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDL  112 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL  112 (385)
                      +..+|+|+|||+|..|+.+...+              .|.-+|+--|.
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~v--------------g~~G~V~t~E~  131 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAV--------------GSQGRVISFEV  131 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEEES
T ss_pred             CCCEEEEecccccHHHHHHHHHh--------------CCCcEEEEecC
Confidence            34899999999999999987554              15567777776

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.44  E-value=0.0025  Score=56.09  Aligned_cols=85  Identities=13%  Similarity=0.098  Sum_probs=46.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|+|||||..|..+. .+       +        .-+|+.-|.-..-....-+.+.          +.+-.+..+
T Consensus        78 ~g~~VLeIGsGsGY~taila-~l-------~--------g~~V~~ie~~~~l~~~a~~~l~----------~~g~~nv~~  131 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALIS-EI-------V--------KTDVYTIERIPELVEFAKRNLE----------RAGVKNVHV  131 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHH-HH-------H--------CSCEEEEESCHHHHHHHHHHHH----------HTTCCSEEE
T ss_pred             ccceEEEecCCCChhHHHHH-Hh-------h--------CceeEEEeccHHHHHHHHHHHH----------HcCCceeEE
Confidence            45799999999999998664 22       1        1224433331110111111111          011122234


Q ss_pred             eccccCccccccCCCCcccEEEcccccccccCCchhh
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESA  181 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l  181 (385)
                      ..+   +-+.-..+.+.+|.++...++..   +|..+
T Consensus       132 ~~g---d~~~g~~~~~pfD~Iiv~~a~~~---ip~~l  162 (215)
T d1jg1a_         132 ILG---DGSKGFPPKAPYDVIIVTAGAPK---IPEPL  162 (215)
T ss_dssp             EES---CGGGCCGGGCCEEEEEECSBBSS---CCHHH
T ss_pred             EEC---ccccCCcccCcceeEEeeccccc---CCHHH
Confidence            433   44555567888999999999864   67665

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.02  E-value=0.0075  Score=55.86  Aligned_cols=115  Identities=11%  Similarity=-0.050  Sum_probs=67.7

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc-ee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS-YF  144 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-~f  144 (385)
                      --+|+|++|++|..|+.+..        .         -.+|+..|.-..--..+-+++..           ....+ -|
T Consensus       146 g~rVLDl~~gtG~~s~~~a~--------g---------~~~V~~vD~s~~al~~a~~n~~~-----------ngl~~~~~  197 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLAL--------G---------FREVVAVDSSAEALRRAEENARL-----------NGLGNVRV  197 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHH--------H---------EEEEEEEESCHHHHHHHHHHHHH-----------TTCTTEEE
T ss_pred             CCeeeccCCCCcHHHHHHHh--------c---------CCcEEeecchHHHHHHHHHHHHH-----------cCCCCcce
Confidence            47999999999999876531        1         25788888854333333332210           11112 23


Q ss_pred             eccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS  223 (385)
Q Consensus       145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra  223 (385)
                      +.+-...+.+++ -...++|+|+..        .|+....                ..     -.....+++..++..-.
T Consensus       198 i~~d~~~~~~~~~~~~~~fD~Vi~D--------pP~~~~~----------------~~-----~~~~~~~~~~~l~~~a~  248 (318)
T d1wxxa2         198 LEANAFDLLRRLEKEGERFDLVVLD--------PPAFAKG----------------KK-----DVERAYRAYKEVNLRAI  248 (318)
T ss_dssp             EESCHHHHHHHHHHTTCCEEEEEEC--------CCCSCCS----------------TT-----SHHHHHHHHHHHHHHHH
T ss_pred             eeccHHHHhhhhHhhhcCCCEEEEc--------CCccccc----------------hH-----HHHHHHHHHHHHHHHHH
Confidence            333223333444 345689998864        3432211                01     12345567778888999


Q ss_pred             hhhccCCeEEEEec
Q 016644          224 KEMKRCGSMFLVCL  237 (385)
Q Consensus       224 ~EL~pGG~lvl~~~  237 (385)
                      +-|+|||.|+++.-
T Consensus       249 ~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         249 KLLKEGGILATASC  262 (318)
T ss_dssp             HTEEEEEEEEEEEC
T ss_pred             HHcCCCCEEEEEeC
Confidence            99999999988763

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.94  E-value=0.0018  Score=55.94  Aligned_cols=38  Identities=16%  Similarity=0.129  Sum_probs=29.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchH
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFN  118 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn  118 (385)
                      ..+|+|.+||+|.-|..+++.+               |...|+.-|.-.....
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~---------------~~~~vi~~D~d~~~l~   61 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHC---------------PGCRIIGIDVDSEVLR   61 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHC---------------TTCEEEEEESCHHHHH
T ss_pred             CCEEEEecCCCcHHHHHHHhcC---------------CCCeEEEeechHHHHH
Confidence            4689999999999999888443               5678999998443333

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.013  Score=52.38  Aligned_cols=80  Identities=9%  Similarity=-0.036  Sum_probs=49.7

Q ss_pred             CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644           64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY  143 (385)
Q Consensus        64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~  143 (385)
                      .+..+|+|+|||+|.-++.+....               |..+++..|.-..-.+..-+++...          +-...+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~---------------~~~~~~~~Di~~~al~~A~~N~~~n----------~l~~~~  114 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATL---------------NGWYFLATEVDDMCFNYAKKNVEQN----------NLSDLI  114 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHH---------------HCCEEEEEESCHHHHHHHHHHHHHT----------TCTTTE
T ss_pred             cccceEEEeCCCchHHHHHHHHhC---------------CCccccceecCHHHHHHHHHHHHHh----------CCCcce
Confidence            356899999999999999887443               5689999998654444443332210          001122


Q ss_pred             ee--ccccCccccccC--CCCcccEEEcc
Q 016644          144 FA--AGVPGSFYRRLF--PTRSIDFFHSA  168 (385)
Q Consensus       144 f~--~~vpgSFy~rLf--P~~Svd~~~Ss  168 (385)
                      .+  ......++..++  ..+++|+++|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~fD~ivsN  143 (250)
T d2h00a1         115 KVVKVPQKTLLMDALKEESEIIYDFCMCN  143 (250)
T ss_dssp             EEEECCTTCSSTTTSTTCCSCCBSEEEEC
T ss_pred             eeeeeccHHhhhhhhhhcccCceeEEEec
Confidence            21  223445555553  46689999996

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.49  E-value=0.043  Score=50.17  Aligned_cols=128  Identities=10%  Similarity=0.058  Sum_probs=66.7

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF  144 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f  144 (385)
                      +..+|+|.|||+|...+.++..+    .++      ..+..+++-.|+-..-.......+.         ...  ....+
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l----~~~------~~~~~~~~g~di~~~~~~~a~~~~~---------~~~--~~~~~  175 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQL----ELK------GDVDVHASGVDVDDLLISLALVGAD---------LQR--QKMTL  175 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHH----HTT------SSCEEEEEEEESCHHHHHHHHHHHH---------HHT--CCCEE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHH----Hhc------cCccceEEEecccHHHHHHHHHHHH---------Hhh--hhhhh
Confidence            56899999999998776665443    121      2356888988873222211111110         000  11111


Q ss_pred             eccccCccccccCCCCcccEEEcccc--cccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          145 AAGVPGSFYRRLFPTRSIDFFHSAFS--LHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       145 ~~~vpgSFy~rLfP~~Svd~~~Ss~a--lHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      .   -+++. ...+...+|+|+++==  .+|...    ...........++.          .        -...|+..-
T Consensus       176 ~---~~d~~-~~~~~~~fD~vi~NPPy~~~~~~~----~~~~~~~~~~~~~~----------~--------~~~~Fi~~~  229 (328)
T d2f8la1         176 L---HQDGL-ANLLVDPVDVVISDLPVGYYPDDE----NAKTFELCREEGHS----------F--------AHFLFIEQG  229 (328)
T ss_dssp             E---ESCTT-SCCCCCCEEEEEEECCCSEESCHH----HHTTSTTCCSSSCE----------E--------HHHHHHHHH
T ss_pred             h---ccccc-cccccccccccccCCCCCCCccch----hhhhcchhcccCcc----------h--------HHHHHHHHH
Confidence            1   12322 2357788999999832  222211    00000000111111          0        123578888


Q ss_pred             HhhhccCCeEEEEeccC
Q 016644          223 SKEMKRCGSMFLVCLGR  239 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g~  239 (385)
                      .+-|+|||++++.++..
T Consensus       230 ~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         230 MRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             HHTEEEEEEEEEEEEGG
T ss_pred             HHhcCCCCceEEEecCc
Confidence            89999999999988754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.097  Score=47.04  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      ..+|+|+|||+|.-++.+. .        .       |..+|+..|.-..=....-++...          .+....+++
T Consensus       111 ~~~vld~g~GsG~i~~~la-~--------~-------~~~~v~a~Dis~~Al~~A~~Na~~----------~~~~~~~~i  164 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVA-K--------F-------SDAIVFATDVSSKAVEIARKNAER----------HGVSDRFFV  164 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHH-H--------H-------SSCEEEEEESCHHHHHHHHHHHHH----------TTCTTSEEE
T ss_pred             ccEEEEeeeeeehhhhhhh-h--------c-------ccceeeechhhhhHHHHHHHHHHH----------cCCCceeEE
Confidence            4689999999998666543 1        1       578999999854333333332211          011123332


Q ss_pred             ccccCccccccC-CCCcccEEEcc
Q 016644          146 AGVPGSFYRRLF-PTRSIDFFHSA  168 (385)
Q Consensus       146 ~~vpgSFy~rLf-P~~Svd~~~Ss  168 (385)
                        .-+++++-+. ..+.+|+++|+
T Consensus       165 --~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         165 --RKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             --EESSTTGGGGGGTTTCCEEEEC
T ss_pred             --eecccccccccccCcccEEEEc
Confidence              3356666542 23689999997

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.53  E-value=0.027  Score=51.93  Aligned_cols=116  Identities=14%  Similarity=-0.022  Sum_probs=65.4

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      -.+|+|+||++|..|+.+..        ..       . -+|+..|+-..--...-+++...        .. ..+.-|.
T Consensus       146 g~~VLDl~~g~G~~si~~a~--------~g-------a-~~V~~vD~s~~al~~a~~N~~~n--------gl-~~~~~~~  200 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAI--------AG-------A-DEVIGIDKSPRAIETAKENAKLN--------GV-EDRMKFI  200 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHH--------TT-------C-SEEEEEESCHHHHHHHHHHHHHT--------TC-GGGEEEE
T ss_pred             CCeeecccCcccchhhhhhh--------cC-------C-cEEEeecCCHHHHHHHHHHHHHc--------CC-Cccceee
Confidence            36899999999999986641        11       2 47888888532222222221100        00 0011122


Q ss_pred             ccccCcccc---cc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644          146 AGVPGSFYR---RL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA  221 (385)
Q Consensus       146 ~~vpgSFy~---rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~  221 (385)
                      .   ++.++   ++ ....++|+|++.        .|.....                 +.   . .....+++..++..
T Consensus       201 ~---~d~~~~~~~~~~~~~~fD~Vi~D--------pP~~~~~-----------------~~---~-~~~~~~~y~~l~~~  248 (324)
T d2as0a2         201 V---GSAFEEMEKLQKKGEKFDIVVLD--------PPAFVQH-----------------EK---D-LKAGLRAYFNVNFA  248 (324)
T ss_dssp             E---SCHHHHHHHHHHTTCCEEEEEEC--------CCCSCSS-----------------GG---G-HHHHHHHHHHHHHH
T ss_pred             e---chhhhhhHHHHhccCCCCchhcC--------CccccCC-----------------HH---H-HHHHHHHHHHHHHH
Confidence            2   24332   22 345688988863        3432211                 00   0 13345677888888


Q ss_pred             HHhhhccCCeEEEEecc
Q 016644          222 RSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       222 Ra~EL~pGG~lvl~~~g  238 (385)
                      -.+-|+|||+|+++...
T Consensus       249 a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         249 GLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             HHTTEEEEEEEEEEECC
T ss_pred             HHHHcCCCcEEEEEeCC
Confidence            99999999999988744

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.30  E-value=0.059  Score=48.14  Aligned_cols=73  Identities=11%  Similarity=-0.048  Sum_probs=43.6

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+|||+|+.|+.+.+        +        ...+|+..|+-.+-+..+-+++...        +.  .+.+- 
T Consensus       108 g~~VlD~~aG~G~~~l~~a~--------~--------~~~~V~avd~n~~a~~~~~~N~~~n--------~l--~~~v~-  160 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAV--------Y--------GKAKVIAIEKDPYTFKFLVENIHLN--------KV--EDRMS-  160 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHH--------H--------TCCEEEEECCCHHHHHHHHHHHHHT--------TC--TTTEE-
T ss_pred             ccEEEECcceEcHHHHHHHH--------h--------CCcEEEEecCCHHHHHHHHHHHHHh--------CC--CceEE-
Confidence            47899999999999987752        1        1257999999554444444433210        00  11221 


Q ss_pred             ccccCccccccCCCCcccEEEc
Q 016644          146 AGVPGSFYRRLFPTRSIDFFHS  167 (385)
Q Consensus       146 ~~vpgSFy~rLfP~~Svd~~~S  167 (385)
                       .+-|+. ..+.+.+.+|.|+.
T Consensus       161 -~~~~D~-~~~~~~~~~D~Ii~  180 (260)
T d2frna1         161 -AYNMDN-RDFPGENIADRILM  180 (260)
T ss_dssp             -EECSCT-TTCCCCSCEEEEEE
T ss_pred             -EEEcch-HHhccCCCCCEEEE
Confidence             223453 34566788898875

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.96  E-value=0.33  Score=40.64  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhhhccCCeEEEEecc
Q 016644          215 LAAFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       215 ~~~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                      ...|+..-.+-|+|||++++.++.
T Consensus       123 ~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1         123 YGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             HHHHHHHHHHhcccCCceEEEEee
Confidence            356778888889999999998864

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.58  E-value=0.28  Score=44.72  Aligned_cols=120  Identities=13%  Similarity=0.063  Sum_probs=64.8

Q ss_pred             CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644           65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-  143 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-  143 (385)
                      +..+|+|++|+||..|+.+..        .         -.+|++-|....--...-+++.-         ..-...++ 
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~--------~---------GA~V~~VD~s~~al~~a~~N~~l---------n~~~~~~~~  185 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAA--------A---------GAEVTHVDASKKAIGWAKENQVL---------AGLEQAPIR  185 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHHHH---------HTCTTSCEE
T ss_pred             CCCeEEEecCCCcHHHHHHHh--------C---------CCeEEEEeChHHHHHHHHHhhhh---------hcccCCcEE
Confidence            457999999999999887652        1         24788888754333333222210         00001122 


Q ss_pred             eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644          144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR  222 (385)
Q Consensus       144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R  222 (385)
                      |+.+=--.|..+. ...+.+|+|+.-        .|.....      .|+.++              ..+.|+...+...
T Consensus       186 ~i~~D~~~~l~~~~~~~~~fD~IilD--------PP~f~~~------~~~~~~--------------~~~~~~~~l~~~~  237 (309)
T d2igta1         186 WICEDAMKFIQREERRGSTYDIILTD--------PPKFGRG------THGEVW--------------QLFDHLPLMLDIC  237 (309)
T ss_dssp             EECSCHHHHHHHHHHHTCCBSEEEEC--------CCSEEEC------TTCCEE--------------EHHHHHHHHHHHH
T ss_pred             EEeCCHHHhHHHHhhcCCCCCEEEEC--------CCccccc------ccchhH--------------HHHHHHHHHHHHH
Confidence            4443222333443 345778888763        3433221      111121              1234455666677


Q ss_pred             HhhhccCCeEEEEecc
Q 016644          223 SKEMKRCGSMFLVCLG  238 (385)
Q Consensus       223 a~EL~pGG~lvl~~~g  238 (385)
                      .+-|+|||.+++.+..
T Consensus       238 ~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         238 REILSPKALGLVLTAY  253 (309)
T ss_dssp             HHTBCTTCCEEEEEEC
T ss_pred             HHhcCCCCCEEEEecC
Confidence            7888999987776643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=88.44  E-value=0.14  Score=46.95  Aligned_cols=120  Identities=10%  Similarity=-0.002  Sum_probs=64.5

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA  145 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~  145 (385)
                      .-+|+|+.|++|..|+....        .        ---+|+.-|+...--...-.++..        +..+..+.-|+
T Consensus       145 g~~VLdlf~~~G~~sl~aa~--------~--------ga~~V~~vD~s~~a~~~a~~N~~~--------n~l~~~~~~~i  200 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAM--------G--------GAMATTSVDLAKRSRALSLAHFEA--------NHLDMANHQLV  200 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHH--------T--------TBSEEEEEESCTTHHHHHHHHHHH--------TTCCCTTEEEE
T ss_pred             CCceeecCCCCcHHHHHHHh--------C--------CCceEEEecCCHHHHHHHHHHHHH--------hcccCcceEEE
Confidence            36899999999998876541        1        124678888854333333222210        00000111244


Q ss_pred             ccccCccccccCC-CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644          146 AGVPGSFYRRLFP-TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK  224 (385)
Q Consensus       146 ~~vpgSFy~rLfP-~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~  224 (385)
                      .+---.|.+++-. ...+|+|+.-        .|....       ++..+              ....+|+...+..-.+
T Consensus       201 ~~d~~~~l~~~~~~~~~fD~Ii~D--------PP~f~~-------~~~~~--------------~~~~~~~~~L~~~a~~  251 (317)
T d2b78a2         201 VMDVFDYFKYARRHHLTYDIIIID--------PPSFAR-------NKKEV--------------FSVSKDYHKLIRQGLE  251 (317)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEEEEC--------CCCC------------CC--------------CCHHHHHHHHHHHHHH
T ss_pred             EccHHHHHHHHHhhcCCCCEEEEc--------Chhhcc-------chhHH--------------HHHHHHHHHHHHHHHH
Confidence            4322233344432 3578888764        332211       11111              1245667777888888


Q ss_pred             hhccCCeEEEEecc
Q 016644          225 EMKRCGSMFLVCLG  238 (385)
Q Consensus       225 EL~pGG~lvl~~~g  238 (385)
                      -|+|||.|+++.-.
T Consensus       252 ll~pgG~l~~~scs  265 (317)
T d2b78a2         252 ILSENGLIIASTNA  265 (317)
T ss_dssp             TEEEEEEEEEEECC
T ss_pred             HcCCCCEEEEEeCC
Confidence            99999999987743

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=87.57  E-value=0.39  Score=41.89  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=18.4

Q ss_pred             CceEEeeeCCCCCcchHHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIVD   85 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~   85 (385)
                      +.-+|+|+|||+|..|..+++
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~   41 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQ   41 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCeEEEECCCchHHHHHHHh
Confidence            457899999999999998874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.18  E-value=0.12  Score=44.18  Aligned_cols=19  Identities=16%  Similarity=-0.024  Sum_probs=15.3

Q ss_pred             ceEEeeeCCCCCcchHHHH
Q 016644           66 PFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~   84 (385)
                      --+|+|+|||+|..++.+.
T Consensus        49 Gk~VLDlGcGtG~l~i~a~   67 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSY   67 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHH
T ss_pred             CCEEEEeCCCCcHHHHHHH
Confidence            4689999999998776543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.43  E-value=0.26  Score=41.81  Aligned_cols=43  Identities=16%  Similarity=0.141  Sum_probs=28.2

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL  124 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l  124 (385)
                      ..+|+|+|||+|..++.+..        +        ....|+..|.-..-...+-+++
T Consensus        47 g~~vLDlg~GtG~l~i~a~~--------~--------g~~~v~~vdi~~~~~~~a~~N~   89 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALL--------L--------GAKEVICVEVDKEAVDVLIENL   89 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHH--------T--------TCSEEEEEESCHHHHHHHHHHT
T ss_pred             CCEEEECcCcchHHHHHHHH--------c--------CCCEEEEEcCcHHHHHHHHHHH
Confidence            46899999999998776541        1        2258889897543334444444

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=83.57  E-value=0.48  Score=38.94  Aligned_cols=20  Identities=15%  Similarity=-0.106  Sum_probs=15.9

Q ss_pred             CceEEeeeCCCCCcchHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~   84 (385)
                      +.-+|+|+|||+|..++..+
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~   60 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAA   60 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHH
T ss_pred             CCCeEEEeccccchhhhhhh
Confidence            34689999999998876554

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.86  E-value=0.26  Score=39.70  Aligned_cols=42  Identities=14%  Similarity=0.004  Sum_probs=28.1

Q ss_pred             ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhc
Q 016644           66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQL  123 (385)
Q Consensus        66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~  123 (385)
                      --+|+|+|||||..++..++        +.       . -+|++-|+-.+-...+-++
T Consensus        15 g~~vlDl~~GtG~~~iea~~--------rg-------a-~~v~~ve~~~~a~~~~~~n   56 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVS--------RG-------M-SAAVLVEKNRKAQAIIQDN   56 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHH--------TT-------C-CEEEEECCCHHHHHHHHHH
T ss_pred             CCeEEEcCCccCHHHHHHHH--------hC-------c-ceeeeehhchhhhhhhhhh
Confidence            46899999999998876541        11       3 4889999854444444443

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=82.15  E-value=0.72  Score=40.34  Aligned_cols=20  Identities=15%  Similarity=0.154  Sum_probs=17.9

Q ss_pred             CceEEeeeCCCCCcchHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIV   84 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~   84 (385)
                      +.-+|+|+|||+|..|..++
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~   48 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLA   48 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHH
T ss_pred             CCCeEEEECCCccHHHHHHH
Confidence            45889999999999999886

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.17  E-value=2.8  Score=36.90  Aligned_cols=22  Identities=9%  Similarity=-0.004  Sum_probs=17.2

Q ss_pred             HHHHHHHhhhccCCeEEEEecc
Q 016644          217 AFLGARSKEMKRCGSMFLVCLG  238 (385)
Q Consensus       217 ~FL~~Ra~EL~pGG~lvl~~~g  238 (385)
                      .|++...+-|+|||.+++....
T Consensus       171 eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         171 EFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHhhHhhcCCCceEEEecCC
Confidence            4667778999999999877643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=81.05  E-value=0.67  Score=40.09  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=19.3

Q ss_pred             CceEEeeeCCCCCcchHHHHHHH
Q 016644           65 IPFALADLGCSCGNNTLYIVDVI   87 (385)
Q Consensus        65 ~~~~IaDlGCs~G~NSl~~~~~i   87 (385)
                      ++-+|+++|+++|.-|+.+...+
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al   81 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAI   81 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHS
T ss_pred             CCCcEEEecchhhhhHHHHHhhC
Confidence            46799999999999999887443