Citrus Sinensis ID: 016657

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKTLSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASIGRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQECINAAEVKEENGIPDNDENKKTDGTISQLSMAIDALSLSSE
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccc
ccccccEEEcccccccccccEccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccEEccccccccccccccccccEcccccccccccccccccccccccccccccEEEEEccHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEcccccHHccccccHHHHHHHHHHHHccccEccHHHHHHHHHHHcccccccccccccHHHHHHcccccccccccHHHHHcccccHHHHHHHHHHcccccc
msgatrvrsmnvaesetrpvlgpagnktgslsawkpaskpsrkiekspvevnaaeekktlspsskaatppasklspkshslsvpsILRRHEQLLQSNlslnascssdastdsfhsrasigrltrsnsvgirrkpfpskprsvvsdggldspppdgsqtkkrcawvtpntdpcyaafhdeewgvpvhddkKLFELLVLSGalseltwpailskrhifrevfvgfdpiaVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVshkpivsrfryprqvpvktpkadviskdlvrrgfrsvgpTIIYSFMQVagvtndhltSCFRFQECINAAevkeengipdndenkktdgtISQLSMAIDALSLSSE
msgatrvrsmnvaesetrpvlgpagnktgslsawkpaskpsrkiekspvevnaaeekktlspsskaatppasklspkshSLSVPSILRRHEQLLQSNLSLNASCSSDastdsfhsrasigrltrsnsvgirrkpfpskprsvvsdggldspppdgsqtkkrcawVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFryprqvpvktpkadviskdlvrrgfRSVGPTIIYSFMQVAGVTNDHLTSCFRFQECINAAEvkeengipdndenkktdgtisQLSMAIdalslsse
MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKtlspsskaatppasklspksHSLSVPSILRRHEqllqsnlslnascssdasTDSFHSRASIGRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNekkllaagsaassllselklRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQECINAAEVKEENGIPDNDENKKTDGTISQLSMAIDALSLSSE
****************************************************************************************************************************************************************RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQECINAAE***********************************
*****R*************VLG*****************************************************************************************************************************************KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQEC******************************AIDALSL***
**************SETRPVLGPAGN********************************************************VPSILRRHEQLLQSNLSLNA************SRASIGRLTRSNSVGIRRKPF*************************RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQECINAAEVKEENGIPDNDENKKTDGTISQLSMAIDALSLSSE
**************S************************************************************************************************************************************************KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQECINAA******************************L*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKTLSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASIGRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQECINAAEVKEENGIPDNDENKKTDGTISQLSMAIDALSLSSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query385 2.2.26 [Sep-21-2011]
Q7VG78 1375 Probable GMP synthase [gl yes no 0.488 0.136 0.450 5e-43
P05100187 DNA-3-methyladenine glyco N/A no 0.462 0.951 0.411 2e-37
P44321185 DNA-3-methyladenine glyco yes no 0.459 0.956 0.391 3e-32
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1 Back     alignment and function desciption
 Score =  175 bits (444), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 154 DGSQTKKRCAWVTPNTDPC---YAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAIL 210
           +G + K RCAW T   +     Y  +HD EWG P+H+DKKLFE LVL G  + L+W  IL
Sbjct: 780 EGVREKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWITIL 839

Query: 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG 270
            KR  FR  F  FDP  V+  +E K+         + +  K+ A I NA+    V  EFG
Sbjct: 840 KKREAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAVQREFG 899

Query: 271 SFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAG 330
           SF+ YIW FV  KPI++ F     +P  TP +D I+KDL +RGF+ VG T +Y+ MQ  G
Sbjct: 900 SFDKYIWGFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYAMMQSIG 959

Query: 331 VTNDHLTSCFR 341
           + NDHLTSCF+
Sbjct: 960 MVNDHLTSCFK 970
Catalyzes the synthesis of GMP from XMP.
Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 2
>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1 Back     alignment and function description
>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
255576987380 DNA-3-methyladenine glycosylase, putativ 0.979 0.992 0.788 1e-173
224091765381 predicted protein [Populus trichocarpa] 0.979 0.989 0.768 1e-164
224142383380 predicted protein [Populus trichocarpa] 0.981 0.994 0.772 1e-163
357480071375 Methyladenine glycosylase protein-like p 0.961 0.986 0.738 1e-159
356516982383 PREDICTED: probable GMP synthase [glutam 0.987 0.992 0.744 1e-159
356562573373 PREDICTED: probable GMP synthase [glutam 0.963 0.994 0.754 1e-157
356500655371 PREDICTED: probable GMP synthase [glutam 0.961 0.997 0.735 1e-155
225445871375 PREDICTED: probable GMP synthase [glutam 0.971 0.997 0.725 1e-145
15242914347 DNA-3-methyladenine glycosylase I [Arabi 0.883 0.979 0.676 1e-132
297793315349 methyladenine glycosylase family protein 0.896 0.988 0.666 1e-129
>gi|255576987|ref|XP_002529378.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] gi|223531126|gb|EEF32974.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 306/388 (78%), Positives = 334/388 (86%), Gaps = 11/388 (2%)

Query: 1   MSGATRVRSMNVAESETRPVLGPAGN-KTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKT 59
           MSGA RVRSMNVA+SETRPVLGP GN K GSLSA KPASK  RK+E SP  V   +EKK 
Sbjct: 1   MSGAPRVRSMNVADSETRPVLGPTGNNKAGSLSAKKPASKQLRKVETSPEAVKLGQEKKL 60

Query: 60  LSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASI 119
           ++       P AS LSPKSHS+SVPS+LRRHEQLL SNLSLNASCSSDASTDSFHSRAS 
Sbjct: 61  VT------VPTASALSPKSHSVSVPSVLRRHEQLLHSNLSLNASCSSDASTDSFHSRAST 114

Query: 120 GRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPP-DGSQTKKRCAWVTPNTDPCYAAFHD 178
           GRLTRSNS+G RRK +  KPRSVVSDGGL+SPPP DGSQ KK CAWVTPN DPCY AFHD
Sbjct: 115 GRLTRSNSLGTRRKQYALKPRSVVSDGGLESPPPSDGSQAKKSCAWVTPNADPCYTAFHD 174

Query: 179 EEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238
           EEWG+PVHDDKKLFELLVLSGAL+ELTWPAILSKRHIFREVF  FDP+ VSK NEKK++A
Sbjct: 175 EEWGIPVHDDKKLFELLVLSGALAELTWPAILSKRHIFREVFANFDPVVVSKFNEKKIIA 234

Query: 239 AGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVK 298
            GS ASSLLSE+KLRAIIENARQISKV DE GSF+ YIWSFV++KPIVSRFRYPRQVPVK
Sbjct: 235 PGSTASSLLSEIKLRAIIENARQISKVTDELGSFDKYIWSFVNYKPIVSRFRYPRQVPVK 294

Query: 299 TPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQECINAAEVKEENGIP 358
           TPKADVISKDLVRRGFRSVGPT++YSFMQVAG+TNDHL SCFRFQECINAAE KEENG+ 
Sbjct: 295 TPKADVISKDLVRRGFRSVGPTVVYSFMQVAGLTNDHLISCFRFQECINAAEGKEENGV- 353

Query: 359 DNDENKKTDGTI-SQLSMAIDALSLSSE 385
              E+K TDG + SQ+S+A+D LS SSE
Sbjct: 354 -KVEDKITDGVVESQISIAMDELSFSSE 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224091765|ref|XP_002309346.1| predicted protein [Populus trichocarpa] gi|222855322|gb|EEE92869.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142383|ref|XP_002324538.1| predicted protein [Populus trichocarpa] gi|222865972|gb|EEF03103.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357480071|ref|XP_003610321.1| Methyladenine glycosylase protein-like protein [Medicago truncatula] gi|355511376|gb|AES92518.1| Methyladenine glycosylase protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356516982|ref|XP_003527169.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max] Back     alignment and taxonomy information
>gi|356562573|ref|XP_003549544.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max] Back     alignment and taxonomy information
>gi|356500655|ref|XP_003519147.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max] Back     alignment and taxonomy information
>gi|225445871|ref|XP_002276173.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing] [Vitis vinifera] gi|297743642|emb|CBI36525.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15242914|ref|NP_200605.1| DNA-3-methyladenine glycosylase I [Arabidopsis thaliana] gi|79331243|ref|NP_001032091.1| DNA-3-methyladenine glycosylase I [Arabidopsis thaliana] gi|9758366|dbj|BAB08867.1| unnamed protein product [Arabidopsis thaliana] gi|27765038|gb|AAO23640.1| At5g57970 [Arabidopsis thaliana] gi|110742914|dbj|BAE99353.1| hypothetical protein [Arabidopsis thaliana] gi|332009596|gb|AED96979.1| DNA-3-methyladenine glycosylase I [Arabidopsis thaliana] gi|332009597|gb|AED96980.1| DNA-3-methyladenine glycosylase I [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297793315|ref|XP_002864542.1| methyladenine glycosylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297310377|gb|EFH40801.1| methyladenine glycosylase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
TAIR|locus:2174373347 AT5G57970 [Arabidopsis thalian 0.883 0.979 0.592 8.6e-104
TAIR|locus:2025697327 AT1G80850 [Arabidopsis thalian 0.683 0.804 0.516 4.7e-74
TAIR|locus:2200447352 AT1G15970 [Arabidopsis thalian 0.867 0.948 0.467 3.2e-72
TAIR|locus:2037268329 AT1G75090 [Arabidopsis thalian 0.529 0.620 0.528 1.6e-61
TAIR|locus:1006230719311 AT1G13635 [Arabidopsis thalian 0.511 0.633 0.456 1.2e-51
TAIR|locus:2156329353 AT5G44680 [Arabidopsis thalian 0.485 0.529 0.486 1.1e-50
TAIR|locus:2087710312 AT3G12710 [Arabidopsis thalian 0.496 0.612 0.466 1.8e-46
TIGR_CMR|GSU_0567191 GSU_0567 "DNA-3-methyladenine 0.475 0.958 0.432 1.1e-39
TIGR_CMR|CBU_0383212 CBU_0383 "DNA-3-methyladenine 0.485 0.882 0.423 1.4e-39
TIGR_CMR|CPS_2351194 CPS_2351 "DNA-3-methyladenine 0.464 0.922 0.395 5.8e-34
TAIR|locus:2174373 AT5G57970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 205/346 (59%), Positives = 232/346 (67%)

Query:     1 MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKXX 60
             MSGA RV+SMNVAE+ETR  LG    K       K  SK  RK+E+S      ++EK   
Sbjct:     1 MSGAPRVQSMNVAEAETRSTLGSTAKKASPFITHKAVSKSLRKLERSSSGRTGSDEK--- 57

Query:    61 XXXXXXXXXXXXXXXXXXHSLSVPSILRRHEXXXXXXXXXXXXXXXXXXTDSFHSRASIG 120
                               H+L+  SILRRHE                   DSFHSRAS G
Sbjct:    58 --TSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNLSLNASFSSDASMDSFHSRASTG 115

Query:   121 RLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEE 180
             RL RS SVG R K +PSKPRSVVS+G LDSPP +GS+TKKRC WVTPN+DPCY  FHDEE
Sbjct:   116 RLIRSYSVGSRSKSYPSKPRSVVSEGALDSPP-NGSETKKRCTWVTPNSDPCYIVFHDEE 174

Query:   181 WGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNXXXXXXXX 240
             WGVPVHDDK+LFELLVLSGAL+E TWP ILSKR  FREVF  FDP A+ K+N        
Sbjct:   175 WGVPVHDDKRLFELLVLSGALAEHTWPTILSKRQAFREVFADFDPNAIVKINEKKIIGPG 234

Query:   241 XXXXXXXXXXXXRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTP 300
                         RA+IENARQI KVI+E+GSF+ YIWSFV +K IVS+FRY RQVP KTP
Sbjct:   235 SPASTLLSDLKLRAVIENARQILKVIEEYGSFDKYIWSFVKNKAIVSKFRYQRQVPAKTP 294

Query:   301 KADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQECI 346
             KA+VISKDLVRRGFRSVGPT++YSFMQ AG+TNDHLTSCFRF  CI
Sbjct:   295 KAEVISKDLVRRGFRSVGPTVVYSFMQAAGITNDHLTSCFRFHHCI 340
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA;ISS
GO:0006284 "base-excision repair" evidence=IEA
GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS
GO:0006306 "DNA methylation" evidence=RCA
TAIR|locus:2025697 AT1G80850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200447 AT1G15970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037268 AT1G75090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230719 AT1G13635 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156329 AT5G44680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087710 AT3G12710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0567 GSU_0567 "DNA-3-methyladenine glycosylase I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0383 CBU_0383 "DNA-3-methyladenine glycosidase I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2351 CPS_2351 "DNA-3-methyladenine glycosylase I" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.20LOW CONFIDENCE prediction!
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
pfam03352179 pfam03352, Adenine_glyco, Methyladenine glycosylas 1e-101
COG2818188 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA 3e-66
PRK10353187 PRK10353, PRK10353, 3-methyl-adenine DNA glycosyla 1e-50
TIGR00624179 TIGR00624, tag, DNA-3-methyladenine glycosylase I 6e-50
>gnl|CDD|190612 pfam03352, Adenine_glyco, Methyladenine glycosylase Back     alignment and domain information 
 Score =  297 bits (762), Expect = e-101
 Identities = 98/181 (54%), Positives = 123/181 (67%), Gaps = 2/181 (1%)

Query: 164 WVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGF 223
           W T  +DP Y A+HDEEWGVPVHDD+KLFELL L G  + L+W  IL KR  FRE F GF
Sbjct: 1   WAT--SDPLYVAYHDEEWGVPVHDDRKLFELLCLEGFQAGLSWITILKKREAFREAFAGF 58

Query: 224 DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHK 283
           DP  V+   E  +    +    + + LK+ A I NAR I K+ +EFGSF+ Y+WSFV  K
Sbjct: 59  DPEKVAAFTEADVERLLADPGIIRNRLKIEATINNARAILKLQEEFGSFSAYLWSFVDGK 118

Query: 284 PIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSCFRFQ 343
           PIV+R++   +VP KTP +D ISKDL +RGF+ VGPTI+Y+FMQ  G+ NDHL  CFR  
Sbjct: 119 PIVNRWKSLAEVPAKTPLSDAISKDLKKRGFKFVGPTIVYAFMQAVGMVNDHLVDCFRHA 178

Query: 344 E 344
           E
Sbjct: 179 E 179

The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA. Length = 179
>gnl|CDD|225374 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|182401 PRK10353, PRK10353, 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information
>gnl|CDD|129711 TIGR00624, tag, DNA-3-methyladenine glycosylase I Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 385
PRK10353187 3-methyl-adenine DNA glycosylase I; Provisional 100.0
TIGR00624179 tag DNA-3-methyladenine glycosylase I. This family 100.0
PF03352179 Adenine_glyco: Methyladenine glycosylase; InterPro 100.0
COG2818188 Tag 3-methyladenine DNA glycosylase [DNA replicati 100.0
cd00056158 ENDO3c endonuclease III; includes endonuclease III 95.57
TIGR03252177 uncharacterized HhH-GPD family protein. This model 95.03
PRK13913218 3-methyladenine DNA glycosylase; Provisional 94.61
TIGR01083191 nth endonuclease III. This equivalog model identif 94.26
smart00478149 ENDO3c endonuclease III. includes endonuclease III 93.62
PRK10702211 endonuclease III; Provisional 91.4
PRK10880 350 adenine DNA glycosylase; Provisional 91.37
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 89.46
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 88.78
PRK01229208 N-glycosylase/DNA lyase; Provisional 83.45
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 82.47
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.9e-86  Score=603.17  Aligned_cols=183  Identities=41%  Similarity=0.782  Sum_probs=180.1

Q ss_pred             CCCCCCCCCCChhhhhhhhcCCCccccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 016657          160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAA  239 (385)
Q Consensus       160 ~RC~Wat~~sdply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~L  239 (385)
                      .||.|++  +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||++|||++||+|+|+||++|
T Consensus         2 ~rC~W~~--~~~l~~~YHD~eWG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~L   79 (187)
T PRK10353          2 ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERL   79 (187)
T ss_pred             CCCCCCC--CChHHHHhhhccCCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHH
Confidence            6999996  89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccch
Q 016657          240 GSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGP  319 (385)
Q Consensus       240 m~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGP  319 (385)
                      |+|++|||||+||+|||+|||++++|++|||||++|||+||+++||+|++.+..++|++|++|++|||+||||||+||||
T Consensus        80 l~d~~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~ylW~fv~~~p~~~~~~~~~~~P~~t~~S~~lskdLKkrGFkFvGp  159 (187)
T PRK10353         80 VQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGT  159 (187)
T ss_pred             hcCchhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhccCCCcccCCccchhcCCCCCHHHHHHHHHHHHcCCcccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhccccCcccccchhhh
Q 016657          320 TIIYSFMQVAGVTNDHLTSCFRFQE  344 (385)
Q Consensus       320 TtvYSFMQAvGivNDHlv~Cfr~~~  344 (385)
                      ||||+||||+||||||+++|+++..
T Consensus       160 t~~ysfmqA~G~vndH~~~C~~~~~  184 (187)
T PRK10353        160 TICYSFMQACGLVNDHVVGCCCHPG  184 (187)
T ss_pred             HHHHHHHHHHCCccccccCccccCC
Confidence            9999999999999999999998853

>TIGR00624 tag DNA-3-methyladenine glycosylase I Back     alignment and domain information
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3 Back     alignment and domain information
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
1lmz_A187 Solution Structure Of 3-Methyladenine Dna Glycosyla 6e-37
2ofk_A183 Crystal Structure Of 3-Methyladenine Dna Glycosylas 2e-36
2ofi_A184 Crystal Structure Of 3-Methyladenine Dna Glycosylas 1e-34
4ai5_A188 Crystal Structure Of Y16f Of 3-Methyladenine Dna Gl 3e-26
4aia_A188 The Structural Basis Of 3-Methyladenine Recognition 7e-26
4ai4_A188 Crystal Structure Of E38q Mutant Of 3-Methyladenine 8e-26
2jg6_A186 Crystal Structure Of A 3-Methyladenine Dna Glycosyl 9e-26
>pdb|1LMZ|A Chain A, Solution Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 187 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (381), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 102/180 (56%), Gaps = 2/180 (1%)
Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
           +RC WV+   DP Y A+HD EWGVP  D KKLFE++ L G  + L+W  +L KR  +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 220 FVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENARQISKVIDEFGSFNNYIWSF 279
           F  FDP+ V+ +                     +AII NAR   ++      F +++WSF
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119
Query: 280 VSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSC 339
           V+H+P +++     ++P  TP +D +SK L +RGF+ VG TI YSFMQ  G+ NDH+  C
Sbjct: 120 VNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179
>pdb|2OFK|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 183 Back     alignment and structure
>pdb|2OFI|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Bound To Dna3MA Length = 184 Back     alignment and structure
>pdb|4AI5|A Chain A, Crystal Structure Of Y16f Of 3-Methyladenine Dna Glycosylase I (Tag) In Complex With 3-Methyladenine Length = 188 Back     alignment and structure
>pdb|4AIA|A Chain A, The Structural Basis Of 3-Methyladenine Recognition By 3-Methyladenine Dna Glycosylase I (Tag) From Staphylococcus Aureus Length = 188 Back     alignment and structure
>pdb|4AI4|A Chain A, Crystal Structure Of E38q Mutant Of 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 188 Back     alignment and structure
>pdb|2JG6|A Chain A, Crystal Structure Of A 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 186 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 1e-107
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 1e-105
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Length = 186 Back     alignment and structure
 Score =  312 bits (801), Expect = e-107
 Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 2/186 (1%)

Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
             CA+ T   DP Y  +HD  WG P++D K LF+LL L    + L+W  IL K+  + E 
Sbjct: 2   NECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEA 59

Query: 220 FVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSF 279
           F  F+P  V+++  + +    +  + +    KL AI+  A+   K+   +GSF+ ++WS+
Sbjct: 60  FYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSY 119

Query: 280 VSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSC 339
           V+ KP   ++ +          A  +SKDL + GF+ +GP  ++SF++ AG+ + HL  C
Sbjct: 120 VNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDC 179

Query: 340 FRFQEC 345
               + 
Sbjct: 180 PSKPKH 185
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Length = 183 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 100.0
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 100.0
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 97.51
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 96.4
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 96.36
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 96.33
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 96.21
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 95.88
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 95.84
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 95.83
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 95.6
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 95.56
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 95.36
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 94.98
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 94.51
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 92.92
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 92.55
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 91.74
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 90.22
2d3d_A88 VTS1 protein; RNA binding, SAM domain, SRE hairpin 82.65
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Back     alignment and structure
Probab=100.00  E-value=1.3e-89  Score=626.31  Aligned_cols=183  Identities=32%  Similarity=0.624  Sum_probs=179.9

Q ss_pred             CCCCCCCCCCCChhhhhhhhcCCCccccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 016657          159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA  238 (385)
Q Consensus       159 ~~RC~Wat~~sdply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~  238 (385)
                      ++||.|++  +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|+||++
T Consensus         1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~   78 (186)
T 2jg6_A            1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR   78 (186)
T ss_dssp             CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            46999996  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccc
Q 016657          239 AGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVG  318 (385)
Q Consensus       239 Lm~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVG  318 (385)
                      ||+|++|||||+||+|||+|||++++|++|||||++|||+|++++||+|++++..+||++||+|++|||+||||||+|||
T Consensus        79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG  158 (186)
T 2jg6_A           79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG  158 (186)
T ss_dssp             HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred             HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccCcccccchhh
Q 016657          319 PTIIYSFMQVAGVTNDHLTSCFRFQ  343 (385)
Q Consensus       319 PTtvYSFMQAvGivNDHlv~Cfr~~  343 (385)
                      |||||+||||+||||||+++|+++.
T Consensus       159 pt~~YafmQA~G~vndH~~~C~~~~  183 (186)
T 2jg6_A          159 PVTVFSFLEAAGLYDAHLKDCPSKP  183 (186)
T ss_dssp             HHHHHHHHHHTTSEECCCTTCTTCC
T ss_pred             hHHHHHHHHHhcccCccccCccccC
Confidence            9999999999999999999998874
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 385
d1nkua_187 a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (T 6e-76
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Length = 187 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

 Score =  231 bits (590), Expect = 6e-76
 Identities = 74/185 (40%), Positives = 110/185 (59%), Gaps = 2/185 (1%)

Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
           +RC WV+   DP Y A+HD EWGVP  D KKLFE++ L G  + L+W  +L KR  +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 220 FVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSF 279
           F  FDP+ V+ + E+ +      A  +    K++AII NAR   ++      F +++WSF
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119

Query: 280 VSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSC 339
           V+H+P +++     ++P  TP +D +SK L +RGF+ VG TI YSFMQ  G+ NDH+  C
Sbjct: 120 VNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179

Query: 340 FRFQE 344
             +  
Sbjct: 180 CCYPG 184

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 96.01
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 95.31
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 95.08
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 94.79
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 94.05
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 92.61
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 91.56
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 88.3
d1oxja162 RNA-binding protein Smaug {Drosophila melanogaster 87.57
d1dxsa_57 C-terminal domain of p73 {Human (Homo sapiens) [Ta 83.23
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 80.25
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-86  Score=604.05  Aligned_cols=185  Identities=40%  Similarity=0.774  Sum_probs=182.1

Q ss_pred             CCCCCCCCCCCChhhhhhhhcCCCccccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 016657          159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA  238 (385)
Q Consensus       159 ~~RC~Wat~~sdply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~  238 (385)
                      ++||+|++  +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|++|++
T Consensus         1 ~~RC~W~~--~~~~~~~YHD~eWG~p~~dD~~LFE~L~Le~fQaGLsW~~IL~Kr~~fr~aF~~Fd~~~vA~~~e~~ie~   78 (187)
T d1nkua_           1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_dssp             CCCCSSCC--SCHHHHHHHHHSSSSCCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHhccCCCcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCHHHHHcCCHHHHHH
Confidence            47999997  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccc
Q 016657          239 AGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVG  318 (385)
Q Consensus       239 Lm~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVG  318 (385)
                      ||+|++|||||+||+|||+|||++++|++|+|||++|||+|++++|++|++.+..+||++|++|++|||+|||+||+|||
T Consensus        79 Ll~d~~IIRNr~KI~Avi~NAr~~l~i~~e~gsf~~~lw~f~~~~p~~~~~~~~~~ip~~t~~s~~lsk~LKk~GfkFvG  158 (187)
T d1nkua_          79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVG  158 (187)
T ss_dssp             HHTCCSSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTCCEECCCSSGGGSCSCCHHHHHHHHHHHHHTCCCCC
T ss_pred             HhccCCeeechHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCcCCCccCHHHhhcCCHHHHHHHHHHHhcCCeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccCcccccchhhhh
Q 016657          319 PTIIYSFMQVAGVTNDHLTSCFRFQEC  345 (385)
Q Consensus       319 PTtvYSFMQAvGivNDHlv~Cfr~~~~  345 (385)
                      ||||||||||+||||||+++||+|+++
T Consensus       159 pt~~ysfmqa~G~vndH~~~C~~~~~~  185 (187)
T d1nkua_         159 TTICYSFMQACGLVNDHVVGCCCYPGN  185 (187)
T ss_dssp             HHHHHHHHHHHTSEECCCSSSSSCCSS
T ss_pred             hHHHHHHHHHcCCcCcccCCCCCCCCC
Confidence            999999999999999999999999763
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure