Citrus Sinensis ID: 016667

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQVSFNACKKSTIMYSNVELFILMHVVRHFRL
Secondary Structure (PSIPRED)
cEEEccHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEcEEEEEEccccccccEEEEcHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEccccEEEHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHHHcccHHHHcccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEccHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHcccEEEccccEEHHHHHHHHHHHHHHHHcHHHHHccccHHHHcccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHEHHHHccccEEEEccHHHHHHHHHEHHccc
Coil and Loop (DISEMBL)
mymveskaGAIVCMLFSLFFLGTWPAIMTLLerrgrppqhtylDYTMTNLLAAIIIAFTlgefgdarpNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGStfnyflddkinkaeilFPGIACFLVAVGLGSavhssnaadnkaklnnlpsdskpgtratfiptscetlpengikdpevgndtvgklkagtAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCfslfspafnlatNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCgfgnglqfmggqaagyaAADAVQVSFNACKKSTIMYSNVELFILMHVVRHFRL
Flexible Loop (DISEMBL)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSnaadnkaklnnlpsdskpgtratfiptscetlpengikdpevgndTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQVSFNACKKSTIMYSNVELFILMHVVRHFRL
Low Complexity Region (SEG)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLsvtevisssitvvigstFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSnaadnkaklnnlPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMggqaagyaaadaVQVSFNACKKSTIMYSNVELFILMHVVRHFRL
Disordered region (IsUnstruct)
*******AGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAV***********************************************DTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQVSFNACKKSTIMYSNVELFILMHVVRHF**
Disordered Region (DISOPRED)
MYM*ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGS********************SKPGTRATFIPTS***********************AGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQVSFNACKKSTIMYSNVELFILMHVVRHFRL
Disordered Region (DISEMBL)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQVSFNACKKSTIMYSNVELFILMHVVRHFRL
Disordered Region (DISPRO)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNK*********************************************AGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQVSFNACKKSTIMYSNVELFILMHVVRHFRL
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQVSFNACKKSTIMYSNVELFILMHVVRHFRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
Q9ZPR7	390	Ureide permease 1 OS=Arab	yes	no	0.844	0.833	0.722	1e-140
Q9ZQ89	398	Ureide permease 2 OS=Arab	no	no	0.896	0.866	0.709	1e-136
Q41706	376	Probable ureide permease	N/A	no	0.880	0.901	0.672	1e-131
Q93Z75	413	Ureide permease 5 OS=Arab	no	no	0.903	0.842	0.667	1e-130
Q9ZQ88	401	Ureide permease 4 OS=Arab	no	no	0.903	0.867	0.673	1e-127
Q9ZPR6	256	Ureide permease 3 OS=Arab	no	no	0.664	1.0	0.665	1e-102
Q8NYZ3	287	Putative sugar uptake pro	N/A	no	0.371	0.498	0.288	0.0009
P0C0G9	287	Putative sugar uptake pro	N/A	no	0.371	0.498	0.288	0.0009
P0DB51	287	Putative sugar uptake pro	yes	no	0.371	0.498	0.288	0.0009
P0DB50	287	Putative sugar uptake pro	N/A	no	0.371	0.498	0.288	0.0009

>sp|Q9ZPR7|UPS1_ARATH Ureide permease 1 OS=Arabidopsis thaliana GN=UPS1 PE=1 SV=1

 Score =  499 bits (1284), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/342 (72%), Positives = 280/342 (81%), Gaps = 17/342 (4%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct: 1   MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGLSVTEVI++SI
Sbjct: 61  GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVITASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK KL N  S    
Sbjct: 119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKTKLQNFKSLE-- 176

Query: 181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
            T ++F     ET+   NG+        T GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct: 177 -TTSSF---EMETISASNGL--------TKGKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           L ITFFAG+CFSLFSPAFNLATNDQWH LK GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct: 225 LVITFFAGICFSLFSPAFNLATNDQWHTLKHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFM 341
           L+ PIL   RSSFKAYLNDWNGRGW+ LAG LCGFGNGLQFM
Sbjct: 285 LYWPILGLPRSSFKAYLNDWNGRGWSFLAGFLCGFGNGLQFM 326

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient. Cotransports protons.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ89|UPS2_ARATH Ureide permease 2 OS=Arabidopsis thaliana GN=UPS2 PE=2 SV=2

 Score =  485 bits (1248), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/358 (70%), Positives = 291/358 (81%), Gaps = 13/358 (3%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML +L  LGTWPA++TLLERRGR PQHTYLDY++TNLLAAIIIAFT 
Sbjct: 1   MYLVESKGGAIACMLLALLSLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAIIIAFTF 60

Query: 61  GEFGDARP---NFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           G+ G  +P   NF+ QL +  DNWPSV+FAMAGG+VLS+GNL+TQYAWA VGLSVTEVI+
Sbjct: 61  GQIGSTKPDSPNFITQLAQ--DNWPSVMFAMAGGIVLSLGNLSTQYAWALVGLSVTEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           SSITVVIGST NYFLDDKINKAEILFPG+ACFL+AV LGSAVH SNA DNKAKL +  + 
Sbjct: 119 SSITVVIGSTLNYFLDDKINKAEILFPGVACFLIAVCLGSAVHRSNADDNKAKLRDFETA 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
            +  +  +        +  N  KD E    T  K K GTA FL+E+EN R+IKVFGK  +
Sbjct: 179 KQEASGPS------TEIGTNSSKDLETNVTT--KPKEGTARFLIELENTRAIKVFGKRKI 230

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGLAITFFAG+CFSLFSPAFNLATNDQW+ LK+GVP L+VYTAFFYFSVS F+IALILN+
Sbjct: 231 IGLAITFFAGLCFSLFSPAFNLATNDQWNRLKQGVPKLVVYTAFFYFSVSCFIIALILNV 290

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ 355
            FL+ P+L   +SSFKAYLNDWNGR WA LAG LCGFGNGLQFMGGQAAGYAAAD+VQ
Sbjct: 291 VFLYYPVLGLPKSSFKAYLNDWNGRYWAFLAGFLCGFGNGLQFMGGQAAGYAAADSVQ 348

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41706|UPSA3_VIGUN Probable ureide permease A3 (Fragment) OS=Vigna unguiculata GN=A3 PE=2 SV=2

 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/351 (67%), Positives = 281/351 (80%), Gaps = 12/351 (3%)

Query: 2   YMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLG 61
           ++VESK GAI CM  +LFFLGTWPA++T+LERRGR PQHTYLDY++TN  AA++IAFT G
Sbjct: 1   HLVESKGGAIACMFLALFFLGTWPALLTMLERRGRLPQHTYLDYSITNFFAALLIAFTFG 60

Query: 62  EFGDARP---NFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISS 118
           E G  +P   NF+ QL +  DNWPSVLFAM GGVVLS+GNL++QYA+AFVGLSVTEVI++
Sbjct: 61  EIGKGKPDEPNFLAQLAQ--DNWPSVLFAMGGGVVLSLGNLSSQYAFAFVGLSVTEVITA 118

Query: 119 SITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLG-SAVHSSNAADNKAKLNNLPSD 177
           SITVVIG+T NYFLDDKINKAEILFPG+ CFL+AV LG    +SSNA+DNKAKL+N  SD
Sbjct: 119 SITVVIGTTLNYFLDDKINKAEILFPGVGCFLIAVFLGFCRFNSSNASDNKAKLSNYTSD 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
            K       +  S +       KD E G+ +   ++AGTA FL+E+E RR+IKVFGKS L
Sbjct: 179 YKE------VAISSKESDLVKSKDLERGSSSADNVEAGTAVFLLELEERRAIKVFGKSTL 232

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGLA+TF AG+CFS+FSPAFNLATNDQWH L  G+PHL VYTAFFYFS+S FVIA+ILNI
Sbjct: 233 IGLALTFSAGLCFSMFSPAFNLATNDQWHTLPNGIPHLTVYTAFFYFSISCFVIAIILNI 292

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGY 348
            FL+ P+L+  +SS KAYL D +GR WALLAGLLCGFGN LQFMGGQAAGY
Sbjct: 293 TFLYHPVLNLPKSSLKAYLADSDGRIWALLAGLLCGFGNSLQFMGGQAAGY 343

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Vigna unguiculata (taxid: 3917)

>sp|Q93Z75|UPS5_ARATH Ureide permease 5 OS=Arabidopsis thaliana GN=UPS5 PE=2 SV=1

 Score =  465 bits (1196), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/358 (66%), Positives = 290/358 (81%), Gaps = 10/358 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           +Y+VESK GAI+C+L SL  LGTWPA+M LLERRGR PQHTYLDY++TN LAAI IAF  
Sbjct: 9   IYVVESKGGAILCLLLSLLCLGTWPALMALLERRGRLPQHTYLDYSITNFLAAIFIAFVF 68

Query: 61  GEFGDAR---PNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           G  G++    P+F+ QLT+++DNWPSVLFAMAGGV LSIGNLATQY+ AFVGLSVTEV +
Sbjct: 69  GGIGESTHEAPSFITQLTQIQDNWPSVLFAMAGGVGLSIGNLATQYSLAFVGLSVTEVTA 128

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           +SITVV+G+T NYFLD+ +N+A+ILF G+ CF+VAV LGSAVHSSN+AD KAKL  L  D
Sbjct: 129 ASITVVVGTTVNYFLDNGLNRADILFSGVGCFMVAVCLGSAVHSSNSADIKAKLGKLSGD 188

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
            +     T  P  C+ L   G+++ E     +  +K G+A FL+ +EN+R+IKV GKS++
Sbjct: 189 CE-----TVTPEECQRL--FGVEEEEEEEKEMENVKEGSAAFLIALENKRAIKVLGKSMV 241

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           +GL ITFFAG+ FSLFSP FNLATNDQWH LK+GVP LIVYTAFFYFS+S FVIA+ LNI
Sbjct: 242 VGLGITFFAGLSFSLFSPLFNLATNDQWHTLKQGVPKLIVYTAFFYFSLSCFVIAVALNI 301

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ 355
            FL+ P+LD+ RSSF+ YL+DWNGRGWAL AGLLCGFGNGLQFMGGQAAGYAA+DAVQ
Sbjct: 302 SFLYKPVLDSPRSSFREYLSDWNGRGWALAAGLLCGFGNGLQFMGGQAAGYAASDAVQ 359

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ88|UPS4_ARATH Ureide permease 4 OS=Arabidopsis thaliana GN=UPS4 PE=2 SV=2

 Score =  456 bits (1172), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/358 (67%), Positives = 285/358 (79%), Gaps = 10/358 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESKAGAI CM+ SL  LG+WPAI+TLLERRGR PQHT+LD+   NLLAAI+IAF+L
Sbjct: 1   MYVVESKAGAIGCMILSLCCLGSWPAILTLLERRGRLPQHTFLDFATANLLAAIVIAFSL 60

Query: 61  GEFGDA---RPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           GE G +   +P+F  QL +  DNWPSVL A+AGGV+LSIGNLATQYA+AFVGLSVTEVI+
Sbjct: 61  GEIGKSTFLKPDFTTQLPQ--DNWPSVLLAVAGGVLLSIGNLATQYAFAFVGLSVTEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           +SITVVIG+T NYFLD+KINKAEILFPG+ CFL+AV LG+AVH+SNAAD K KL +LPS+
Sbjct: 119 ASITVVIGTTLNYFLDNKINKAEILFPGVGCFLIAVFLGAAVHASNAADVKEKLKSLPSE 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
               +       + E  PE    D E       K KAGTAGF VE+EN+R+IKVFGKSI+
Sbjct: 179 DLYSSI-----ENGEDKPEIEKTDVESQEKLAEKAKAGTAGFYVELENKRAIKVFGKSIM 233

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGL IT FAG+  SLFSPAFNLATNDQW  L KGVP L+VYTAFFYFS++GF+I+LILN+
Sbjct: 234 IGLFITLFAGISLSLFSPAFNLATNDQWSTLPKGVPKLVVYTAFFYFSIAGFLISLILNL 293

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ 355
            FL+ P++   RSS K Y+ D  GRGWA+ AG LCGFGNGLQFMGGQAAGYAAAD+VQ
Sbjct: 294 IFLYRPMVGLARSSLKKYIYDSKGRGWAVFAGFLCGFGNGLQFMGGQAAGYAAADSVQ 351

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPR6|UPS3_ARATH Ureide permease 3 OS=Arabidopsis thaliana GN=UPS3 PE=2 SV=2

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/275 (66%), Positives = 213/275 (77%), Gaps = 19/275 (6%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY++ESK G I CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIAFTL
Sbjct: 1   MYVIESKGGTITCMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIAFTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE   +RPNF  QL++  DNWPSV+FAMAGG+ LS+G LATQYAWAFVGLSVTEVI++SI
Sbjct: 61  GEISPSRPNFTTQLSQ--DNWPSVMFAMAGGIFLSLGTLATQYAWAFVGLSVTEVITASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
            VVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK+KL    S    
Sbjct: 119 AVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKSKLQGFKS---- 174

Query: 181 GTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGL 240
                   TS   +  + IK+        GK K GTA FL+E+E +R+IKVFGKS +IGL
Sbjct: 175 -----LETTSSFQMETSSIKE--------GKAKVGTADFLIEVEKQRAIKVFGKSTIIGL 221

Query: 241 AITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHL 275
           AITFFAG+CFSL SPA +LATNDQWH LK GV  L
Sbjct: 222 AITFFAGICFSLISPAVSLATNDQWHTLKHGVGTL 256

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8NYZ3|Y2243_STRP8 Putative sugar uptake protein spyM18_2243 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=spyM18_2243 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 23  TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWP 82
           TW +I  +  + G  P    L  T   LL      F+L  +   RP    QL      W 
Sbjct: 13  TWGSIGFVSNKIGGKPSQQTLGMTFGALL------FSLAVWLIVRPEMTLQL------W- 59

Query: 83  SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINK-AEI 141
             LF + GG + SIG     +A  ++G+SV   +SS   +V+GS     +  +  +  + 
Sbjct: 60  --LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQF 117

Query: 142 LFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRA 184
           +   +A  L+ VG      SS   D  A++N+L + SK G RA
Sbjct: 118 VVGSLALLLLIVGF---YFSSKQDDANAQVNHLHNFSK-GFRA 156

Streptococcus pyogenes serotype M18 (taxid: 301451)

>sp|P0C0G9|Y2205_STRP1 Putative sugar uptake protein SPy_2205/M5005_Spy1856 OS=Streptococcus pyogenes serotype M1 GN=SPy_2205 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 23  TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWP 82
           TW +I  +  + G  P    L  T   LL      F+L  +   RP    QL      W 
Sbjct: 13  TWGSIGFVSNKIGGKPSQQTLGMTFGALL------FSLAVWLIVRPEMTLQL------W- 59

Query: 83  SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINK-AEI 141
             LF + GG + SIG     +A  ++G+SV   +SS   +V+GS     +  +  +  + 
Sbjct: 60  --LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQF 117

Query: 142 LFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRA 184
           +   +A  L+ VG      SS   D  A++N+L + SK G RA
Sbjct: 118 VVGSLALLLLIVGF---YFSSKQDDANAQVNHLHNFSK-GFRA 156

Streptococcus pyogenes serotype M1 (taxid: 301447)

>sp|P0DB51|Y1856_STRPQ Putative sugar uptake protein SPs1852 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=SPs1852 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 23  TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWP 82
           TW +I  +  + G  P    L  T   LL      F+L  +   RP    QL      W 
Sbjct: 13  TWGSIGFVSNKIGGKPSQQTLGMTFGALL------FSLAVWLIVRPEMTLQL------W- 59

Query: 83  SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINK-AEI 141
             LF + GG + SIG     +A  ++G+SV   +SS   +V+GS     +  +  +  + 
Sbjct: 60  --LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQF 117

Query: 142 LFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRA 184
           +   +A  L+ VG      SS   D  A++N+L + SK G RA
Sbjct: 118 VVGSLALLLLIVGF---YFSSKQDDANAQVNHLHNFSK-GFRA 156

Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567)

>sp|P0DB50|Y1856_STRP3 Putative sugar uptake protein SpyM3_1856 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=SpyM3_1856 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 23  TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWP 82
           TW +I  +  + G  P    L  T   LL      F+L  +   RP    QL      W 
Sbjct: 13  TWGSIGFVSNKIGGKPSQQTLGMTFGALL------FSLAVWLIVRPEMTLQL------W- 59

Query: 83  SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINK-AEI 141
             LF + GG + SIG     +A  ++G+SV   +SS   +V+GS     +  +  +  + 
Sbjct: 60  --LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQF 117

Query: 142 LFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRA 184
           +   +A  L+ VG      SS   D  A++N+L + SK G RA
Sbjct: 118 VVGSLALLLLIVGF---YFSSKQDDANAQVNHLHNFSK-GFRA 156

Streptococcus pyogenes serotype M3 (taxid: 301448)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
224098968	398	predicted protein [Populus trichocarpa]	0.862	0.834	0.741	1e-146
357487617	397	Ureide permease [Medicago truncatula] gi	0.862	0.836	0.754	1e-143
356499891	395	PREDICTED: ureide permease 2-like [Glyci	0.859	0.837	0.747	1e-142
255542034	406	Ureide permease, putative [Ricinus commu	0.880	0.834	0.735	1e-140
359472811	397	PREDICTED: ureide permease 2-like [Vitis	0.846	0.821	0.734	1e-139
18395580	390	ureide permease 1 [Arabidopsis thaliana]	0.844	0.833	0.722	1e-138
110738430	390	hypothetical protein [Arabidopsis thalia	0.844	0.833	0.719	1e-138
449475503	375	PREDICTED: LOW QUALITY PROTEIN: ureide p	0.932	0.957	0.691	1e-137
297814656	402	hypothetical protein ARALYDRAFT_484262 [	0.901	0.863	0.713	1e-136
297814672	390	predicted protein [Arabidopsis lyrata su	0.844	0.833	0.710	1e-136

>gi|224098968|ref|XP_002311338.1| predicted protein [Populus trichocarpa] gi|222851158|gb|EEE88705.1| predicted protein [Populus trichocarpa]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/344 (74%), Positives = 292/344 (84%), Gaps = 12/344 (3%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML +LFFLGTWPA+MTLLERRGR PQHTYLDY++TNLLAA+IIAFT 
Sbjct: 1   MYVVESKGGAIACMLLALFFLGTWPAVMTLLERRGRLPQHTYLDYSITNLLAAVIIAFTF 60

Query: 61  GEFGDAR---PNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           GE G +    PNF+ QL++L DNWPSV+FAMAGGVVLS+GNL+TQYAWAFVGLSVTEVI+
Sbjct: 61  GEIGKSTHEAPNFLTQLSQLSDNWPSVMFAMAGGVVLSLGNLSTQYAWAFVGLSVTEVIT 120

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           +SITVVIG+T NYFLDDKINKAEILFPG+ CFL+AV LGSAVHSSNAADN+AKL  L SD
Sbjct: 121 ASITVVIGTTLNYFLDDKINKAEILFPGVGCFLIAVCLGSAVHSSNAADNRAKLKGLTSD 180

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
           +K  T   FI +         +KD E G+ T  + KAGTA FL+E+ENRRSIKVFG+S L
Sbjct: 181 NKNVTEYAFIFS---------LKDMENGSSTPERAKAGTADFLIELENRRSIKVFGRSTL 231

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGL+ITFFAG CFSLFSPAFNLATNDQWH LKKGVP L+VYTAFF+FSVS FV+A+ILN+
Sbjct: 232 IGLSITFFAGFCFSLFSPAFNLATNDQWHTLKKGVPKLVVYTAFFWFSVSCFVLAIILNV 291

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFM 341
            FL+ P+L+  RSS KAY+NDWNGRGWA LAGLLCGFGNGLQFM
Sbjct: 292 TFLYRPVLNLPRSSLKAYVNDWNGRGWAFLAGLLCGFGNGLQFM 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487617|ref|XP_003614096.1| Ureide permease [Medicago truncatula] gi|355515431|gb|AES97054.1| Ureide permease [Medicago truncatula]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/342 (75%), Positives = 285/342 (83%), Gaps = 10/342 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYMVES+ GAIVCML SLFFLGTWPA+MTLLERRGR PQHTYLDYT+TNLLAA+IIAFT 
Sbjct: 1   MYMVESRGGAIVCMLVSLFFLGTWPAVMTLLERRGRLPQHTYLDYTITNLLAAVIIAFTF 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           G+ G   PNF+ QL++  DN PSVLFAMAGGVVLSIGNL+TQYAWAFVGLSV EVI+SSI
Sbjct: 61  GQIGTDHPNFLSQLSQ--DNLPSVLFAMAGGVVLSIGNLSTQYAWAFVGLSVVEVITSSI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDDKINKAEILFPG+ CFLVAV LGSAVHSSN ADN+AKL++   D   
Sbjct: 119 TVVIGTTLNYFLDDKINKAEILFPGVGCFLVAVCLGSAVHSSNTADNQAKLSSHHKDVVQ 178

Query: 181 GTRATFIPTSCETLPENGIKD-PEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
           GT       +  TL E    D  ++ N T  K KAGTA FL+E+E +RSIKVFGKS  IG
Sbjct: 179 GT-------NLSTLNEESKDDSKDLENGTANKAKAGTAVFLIELEKKRSIKVFGKSTFIG 231

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           LAITFFAGVCFSLFSPAFNLATNDQWH LKKGVPHL VYTAFFYFSVS FV+A+ILNI F
Sbjct: 232 LAITFFAGVCFSLFSPAFNLATNDQWHTLKKGVPHLSVYTAFFYFSVSCFVVAIILNITF 291

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFM 341
           L+ P+L+  +SS KAYL DWNGRGWALLAGLLCGFGNGLQFM
Sbjct: 292 LYHPVLNLPKSSLKAYLGDWNGRGWALLAGLLCGFGNGLQFM 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499891|ref|XP_003518769.1| PREDICTED: ureide permease 2-like [Glycine max]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/341 (74%), Positives = 284/341 (83%), Gaps = 10/341 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML SLFFLGTWPA+MTLLERRGR PQHTYLDYT+TNL+AA+IIAFT 
Sbjct: 1   MYVVESKVGAIGCMLVSLFFLGTWPAVMTLLERRGRLPQHTYLDYTLTNLMAAVIIAFTF 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           G+ G+A+PNF+ QL++  DNWPSVLFAM GGVVLS+GNL+TQYAWAFVGLSV EVI+SSI
Sbjct: 61  GQIGNAQPNFLSQLSQ--DNWPSVLFAMGGGVVLSVGNLSTQYAWAFVGLSVVEVITSSI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDDKINKAEILFPG+ CFL+AV LGSAVHSSN  DNKAKL    SD K 
Sbjct: 119 TVVIGTTLNYFLDDKINKAEILFPGVGCFLIAVCLGSAVHSSNTVDNKAKL----SDYKD 174

Query: 181 GTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGL 240
             + T + T  ET  E   KD E   D   K KAGTA FL+E+E +RSIKV GKS  IGL
Sbjct: 175 AAKGTSVTTFKET-SEVESKDLE---DGTHKAKAGTAAFLIELEKKRSIKVLGKSTFIGL 230

Query: 241 AITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFL 300
           AITFFAGVCFSLFSPAFNLATNDQWH LKKGV HL VYTAFFYFSVS FVIA+ILNI FL
Sbjct: 231 AITFFAGVCFSLFSPAFNLATNDQWHTLKKGVHHLSVYTAFFYFSVSCFVIAIILNITFL 290

Query: 301 FSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFM 341
           + P+L+  +SS KAYL+DW+GRGWA LAGLLCGFGNGLQFM
Sbjct: 291 YHPVLNLPKSSLKAYLSDWDGRGWAFLAGLLCGFGNGLQFM 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542034|ref|XP_002512081.1| Ureide permease, putative [Ricinus communis] gi|223549261|gb|EEF50750.1| Ureide permease, putative [Ricinus communis]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/344 (73%), Positives = 291/344 (84%), Gaps = 5/344 (1%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI+CML SLFFLGTWPAIMTLLERRGR PQHTYLDY++TNLLAA+IIA T 
Sbjct: 1   MYMIESKGGAIICMLLSLFFLGTWPAIMTLLERRGRLPQHTYLDYSITNLLAAVIIALTF 60

Query: 61  GEFGDA---RPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           GE G++    PNF+ Q+++  DNWPS++FAMAGG+VLSIGNL+TQYAWAFVGLSV EVI+
Sbjct: 61  GEIGNSTPESPNFLTQISQ--DNWPSIMFAMAGGIVLSIGNLSTQYAWAFVGLSVVEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           SSITVV+G+T NYFLDD+IN+AEILFPG+ CFL+AV LGSAVHSSNAADNKAKL N  SD
Sbjct: 119 SSITVVLGTTMNYFLDDRINRAEILFPGVGCFLIAVCLGSAVHSSNAADNKAKLKNFSSD 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
            K  T  T    + E    NG KDPE GN   GK KAGTA FLVE+E++RSIKVFGKS L
Sbjct: 179 YKLRTVDTGSSITKEESTSNGSKDPETGNVPAGKAKAGTAAFLVELESKRSIKVFGKSTL 238

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGLAITFFAGVCFSLFSPAFN+ATNDQWH LKKGVP L+VYTAFF+FSVS F++A+ILNI
Sbjct: 239 IGLAITFFAGVCFSLFSPAFNIATNDQWHTLKKGVPKLVVYTAFFWFSVSCFILAIILNI 298

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFM 341
            FL+ P+L+  +S+ KAY+ND NGRGWA LAG LCGFGNGLQFM
Sbjct: 299 IFLYRPVLNLPKSTLKAYVNDGNGRGWAFLAGFLCGFGNGLQFM 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472811|ref|XP_003631196.1| PREDICTED: ureide permease 2-like [Vitis vinifera]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/347 (73%), Positives = 283/347 (81%), Gaps = 21/347 (6%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML SL FLGTWPAIMTLLERRGR PQHTYLDYT+TNLLAA+IIA T 
Sbjct: 1   MYLVESKGGAIACMLLSLSFLGTWPAIMTLLERRGRLPQHTYLDYTITNLLAAVIIALTF 60

Query: 61  GEFGDAR---PNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           G+ G +    PNF+ QL++  DNWP +L AMAGGVVLS+GNL+TQYAWAFVGLSVTEVI+
Sbjct: 61  GQIGSSTAEVPNFLTQLSQ--DNWPCILLAMAGGVVLSLGNLSTQYAWAFVGLSVTEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           SSITVVIG+T NYFLDDKINKAEILFPG+ CFL+AV L SAVHSSNAADNKAKL      
Sbjct: 119 SSITVVIGTTLNYFLDDKINKAEILFPGVGCFLIAVCLASAVHSSNAADNKAKL------ 172

Query: 178 SKPGTRATFIPTSC--ETLPENGIKDPEVGND-TVGKLKAGTAGFLVEIENRRSIKVFGK 234
                 A  I TS   E  P NG  DPE G+  T  K K GTA FL+E+E RRSIKVFGK
Sbjct: 173 -----MAQGIDTSVVKEASPNNG--DPENGSSGTAPKAKFGTADFLIEVEKRRSIKVFGK 225

Query: 235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALI 294
           S LIGL ITFFAGVCFSLFSPAFNLATNDQWH LK+GVPHL+VYTAFFYFSVS FV+ALI
Sbjct: 226 STLIGLVITFFAGVCFSLFSPAFNLATNDQWHTLKEGVPHLVVYTAFFYFSVSCFVLALI 285

Query: 295 LNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFM 341
           LNI FL+ P++D  +S+ +AYL+DWNGRGWA LAGLLCGFGNGLQFM
Sbjct: 286 LNIIFLYRPVMDAPKSTLRAYLSDWNGRGWAFLAGLLCGFGNGLQFM 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395580|ref|NP_565303.1| ureide permease 1 [Arabidopsis thaliana] gi|68566149|sp|Q9ZPR7.1|UPS1_ARATH RecName: Full=Ureide permease 1; Short=AtUPS1 gi|4406756|gb|AAD20067.1| expressed protein [Arabidopsis thaliana] gi|21554091|gb|AAM63172.1| putative integral membrane protein [Arabidopsis thaliana] gi|115646808|gb|ABJ17125.1| At2g03590 [Arabidopsis thaliana] gi|330250624|gb|AEC05718.1| ureide permease 1 [Arabidopsis thaliana]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/342 (72%), Positives = 280/342 (81%), Gaps = 17/342 (4%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct: 1   MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGLSVTEVI++SI
Sbjct: 61  GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVITASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK KL N  S    
Sbjct: 119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKTKLQNFKSLE-- 176

Query: 181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
            T ++F     ET+   NG+        T GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct: 177 -TTSSF---EMETISASNGL--------TKGKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           L ITFFAG+CFSLFSPAFNLATNDQWH LK GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct: 225 LVITFFAGICFSLFSPAFNLATNDQWHTLKHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFM 341
           L+ PIL   RSSFKAYLNDWNGRGW+ LAG LCGFGNGLQFM
Sbjct: 285 LYWPILGLPRSSFKAYLNDWNGRGWSFLAGFLCGFGNGLQFM 326

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738430|dbj|BAF01141.1| hypothetical protein [Arabidopsis thaliana]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/342 (71%), Positives = 280/342 (81%), Gaps = 17/342 (4%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct: 1   MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGLSVTEVI++SI
Sbjct: 61  GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVITASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK KL N  S    
Sbjct: 119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKTKLQNFKSLE-- 176

Query: 181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
            T ++F     ET+   NG+        T GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct: 177 -TTSSF---EMETISASNGL--------TKGKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           L ITFFAG+CFSLFSPAFNLATNDQWH LK GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct: 225 LVITFFAGICFSLFSPAFNLATNDQWHTLKHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFM 341
           L+ PIL   RSSFKAYLNDWNGRGW+ LAG LCGFG+GLQFM
Sbjct: 285 LYWPILGLPRSSFKAYLNDWNGRGWSFLAGFLCGFGDGLQFM 326

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475503|ref|XP_004154473.1| PREDICTED: LOW QUALITY PROTEIN: ureide permease 2-like [Cucumis sativus]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 255/369 (69%), Positives = 302/369 (81%), Gaps = 10/369 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CM+F+L  LGTWPA++TLLERRGR PQHTYLDY++TNLLAA+II F  
Sbjct: 1   MYVVESKGGAIACMVFALMLLGTWPALLTLLERRGRLPQHTYLDYSITNLLAALIIXFNF 60

Query: 61  GEFGDA---RPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           GE G++    PNF+ QL++  DNWPSV+FAMAGG+VLS+GNL+TQYAWAFVGLSVTEVI+
Sbjct: 61  GEIGNSSLHHPNFIQQLSQ--DNWPSVMFAMAGGIVLSLGNLSTQYAWAFVGLSVTEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           S ITVVIG+T NYFLDDKINKAEILFPG+ACFL+AV LGSAVHSSN ADNKAKL +L  +
Sbjct: 119 SGITVVIGTTLNYFLDDKINKAEILFPGVACFLIAVCLGSAVHSSNTADNKAKLKSLSHN 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
           +   ++  F+      L      D E  + +  K K GTA FL+++E RRSIKVFGKS L
Sbjct: 179 TNQESKYIFV-----ALLILXSSDLENADSSSLKAKFGTADFLIQLEKRRSIKVFGKSTL 233

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGL+ITFFAG+CFSLFSPAFNLATNDQWH L  GVPHL VYTAFFYFSVS F+IA++LN+
Sbjct: 234 IGLSITFFAGICFSLFSPAFNLATNDQWHTLNNGVPHLSVYTAFFYFSVSCFIIAIVLNV 293

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQVS 357
            FL+ PIL++ +++ KAY+NDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ  
Sbjct: 294 VFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQFD 353

Query: 358 FNACKKSTI 366
            +  KK  +
Sbjct: 354 VSFHKKDAL 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814656|ref|XP_002875211.1| hypothetical protein ARALYDRAFT_484262 [Arabidopsis lyrata subsp. lyrata] gi|297321049|gb|EFH51470.1| hypothetical protein ARALYDRAFT_484262 [Arabidopsis lyrata subsp. lyrata]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/360 (71%), Positives = 294/360 (81%), Gaps = 13/360 (3%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML +L  LGTWPAI+TLLERRGR PQHTYLDY++TNLLAAIIIAFT 
Sbjct: 1   MYLVESKGGAIACMLLALLSLGTWPAILTLLERRGRLPQHTYLDYSITNLLAAIIIAFTF 60

Query: 61  GEFGDARP---NFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           G+ G  +P   NF+ QL +  DNWPSV+FAMAGG+VLS+GNLATQYAWA VGLSVTEV++
Sbjct: 61  GQIGSTKPDSPNFITQLAQ--DNWPSVMFAMAGGIVLSLGNLATQYAWALVGLSVTEVVT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           SSITVVIGST NYFLDDKINKAEILFPG+ACFL+AV LGSAVH SNA DNKAKL +    
Sbjct: 119 SSITVVIGSTLNYFLDDKINKAEILFPGVACFLIAVCLGSAVHRSNADDNKAKLRDFEMA 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPE--VGNDTVGKLKAGTAGFLVEIENRRSIKVFGKS 235
            +  +  +        +  N  KD E  V ++T  K K GTA FL+E+EN+R+IKVFGK 
Sbjct: 179 KQEASGPS------TEIGTNSSKDLETNVTDETSTKPKEGTARFLIELENKRAIKVFGKR 232

Query: 236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALIL 295
            +IGLAITFFAG+CFSLFSPAFNLATNDQWH LK+GVP L++YTAFFYFSVS F+IALIL
Sbjct: 233 KIIGLAITFFAGLCFSLFSPAFNLATNDQWHRLKQGVPKLVLYTAFFYFSVSCFIIALIL 292

Query: 296 NIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ 355
           NI FL+ P+L   +SSFKAYLNDWNGR WA LAG LCGFGNGLQFMGGQAAGYAAAD+VQ
Sbjct: 293 NIGFLYHPVLGLPKSSFKAYLNDWNGRYWAFLAGFLCGFGNGLQFMGGQAAGYAAADSVQ 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814672|ref|XP_002875219.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297321057|gb|EFH51478.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/342 (71%), Positives = 279/342 (81%), Gaps = 17/342 (4%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct: 1   MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGLSVTEVI++SI
Sbjct: 61  GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVIAASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK+K  +  S    
Sbjct: 119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKSKFQDFKSLE-- 176

Query: 181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
            T ++F     ET+   NG+          GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct: 177 -TASSF---EMETVSANNGLAK--------GKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           LAITFFAG+CFSLFSPAFNLATNDQWH L+ GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct: 225 LAITFFAGICFSLFSPAFNLATNDQWHTLEHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFM 341
           L+ PIL   RSSFK YLNDWNGRGW+ LAG LCGFGNGLQFM
Sbjct: 285 LYWPILGLPRSSFKDYLNDWNGRGWSFLAGFLCGFGNGLQFM 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
TAIR|locus:2044214	390	UPS1 "ureide permease 1" [Arab	0.880	0.869	0.634	3.9e-115
TAIR|locus:2063814	398	UPS2 "AT2G03530" [Arabidopsis	0.896	0.866	0.617	6.8e-111
TAIR|locus:2197995	413	UPS5 "ureide permease 5" [Arab	0.903	0.842	0.581	4.4e-107
TAIR|locus:2063851	401	UPS4 "ureide permease 4" [Arab	0.903	0.867	0.583	1.3e-102

TAIR|locus:2044214 UPS1 "ureide permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 226/356 (63%), Positives = 256/356 (71%)

Query:     1 MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
             MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct:     1 MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query:    61 GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLXXXXXXXXXX 120
             GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGL          
Sbjct:    61 GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVITASI 118

Query:   121 XXXXXXXFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSXXXXXXXXXXXXPSDSKP 180
                     NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH S             S    
Sbjct:   119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKTKLQNFKSLE-- 176

Query:   181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
              T ++F     ET+   NG+        T GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct:   177 -TTSSF---EMETISASNGL--------TKGKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query:   240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
             L ITFFAG+CFSLFSPAFNLATNDQWH LK GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct:   225 LVITFFAGICFSLFSPAFNLATNDQWHTLKHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query:   300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMXXXXXXXXXXXXVQ 355
             L+ PIL   RSSFKAYLNDWNGRGW+ LAG LCGFGNGLQFM            VQ
Sbjct:   285 LYWPILGLPRSSFKAYLNDWNGRGWSFLAGFLCGFGNGLQFMGGQAAGYAAADAVQ 340

GO:0005739 "mitochondrion" evidence=ISM

GO:0005274 "allantoin uptake transmembrane transporter activity" evidence=IDA

GO:0015720 "allantoin transport" evidence=IDA

GO:0015931 "nucleobase-containing compound transport" evidence=IDA

TAIR|locus:2063814 UPS2 "AT2G03530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 221/358 (61%), Positives = 255/358 (71%)

Query:     1 MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
             MY+VESK GAI CML +L  LGTWPA++TLLERRGR PQHTYLDY++TNLLAAIIIAFT 
Sbjct:     1 MYLVESKGGAIACMLLALLSLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAIIIAFTF 60

Query:    61 GEFGDARP---NFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLXXXXXXX 117
             G+ G  +P   NF+ QL +  DNWPSV+FAMAGG+VLS+GNL+TQYAWA VGL       
Sbjct:    61 GQIGSTKPDSPNFITQLAQ--DNWPSVMFAMAGGIVLSLGNLSTQYAWALVGLSVTEVIT 118

Query:   118 XXXXXXXXXXFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSXXXXXXXXXXXXPSD 177
                        NYFLDDKINKAEILFPG+ACFL+AV LGSAVH S              D
Sbjct:   119 SSITVVIGSTLNYFLDDKINKAEILFPGVACFLIAVCLGSAVHRSNADDNKAKLR----D 174

Query:   178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
              +   +    P++   +  N  KD E    T  K K GTA FL+E+EN R+IKVFGK  +
Sbjct:   175 FETAKQEASGPST--EIGTNSSKDLETNVTT--KPKEGTARFLIELENTRAIKVFGKRKI 230

Query:   238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
             IGLAITFFAG+CFSLFSPAFNLATNDQW+ LK+GVP L+VYTAFFYFSVS F+IALILN+
Sbjct:   231 IGLAITFFAGLCFSLFSPAFNLATNDQWNRLKQGVPKLVVYTAFFYFSVSCFIIALILNV 290

Query:   298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMXXXXXXXXXXXXVQ 355
              FL+ P+L   +SSFKAYLNDWNGR WA LAG LCGFGNGLQFM            VQ
Sbjct:   291 VFLYYPVLGLPKSSFKAYLNDWNGRYWAFLAGFLCGFGNGLQFMGGQAAGYAAADSVQ 348

GO:0015505 "uracil:cation symporter activity" evidence=IGI

GO:0015931 "nucleobase-containing compound transport" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2197995 UPS5 "ureide permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 208/358 (58%), Positives = 253/358 (70%)

Query:     1 MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
             +Y+VESK GAI+C+L SL  LGTWPA+M LLERRGR PQHTYLDY++TN LAAI IAF  
Sbjct:     9 IYVVESKGGAILCLLLSLLCLGTWPALMALLERRGRLPQHTYLDYSITNFLAAIFIAFVF 68

Query:    61 GEFGDAR---PNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLXXXXXXX 117
             G  G++    P+F+ QLT+++DNWPSVLFAMAGGV LSIGNLATQY+ AFVGL       
Sbjct:    69 GGIGESTHEAPSFITQLTQIQDNWPSVLFAMAGGVGLSIGNLATQYSLAFVGLSVTEVTA 128

Query:   118 XXXXXXXXXXFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSXXXXXXXXXXXXPSD 177
                        NYFLD+ +N+A+ILF G+ CF+VAV LGSAVHSS              D
Sbjct:   129 ASITVVVGTTVNYFLDNGLNRADILFSGVGCFMVAVCLGSAVHSSNSADIKAKLGKLSGD 188

Query:   178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
              +     T  P  C+ L   G+++ E     +  +K G+A FL+ +EN+R+IKV GKS++
Sbjct:   189 CE-----TVTPEECQRL--FGVEEEEEEEKEMENVKEGSAAFLIALENKRAIKVLGKSMV 241

Query:   238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
             +GL ITFFAG+ FSLFSP FNLATNDQWH LK+GVP LIVYTAFFYFS+S FVIA+ LNI
Sbjct:   242 VGLGITFFAGLSFSLFSPLFNLATNDQWHTLKQGVPKLIVYTAFFYFSLSCFVIAVALNI 301

Query:   298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMXXXXXXXXXXXXVQ 355
              FL+ P+LD+ RSSF+ YL+DWNGRGWAL AGLLCGFGNGLQFM            VQ
Sbjct:   302 SFLYKPVLDSPRSSFREYLSDWNGRGWALAAGLLCGFGNGLQFMGGQAAGYAASDAVQ 359

GO:0005739 "mitochondrion" evidence=ISM

GO:0005274 "allantoin uptake transmembrane transporter activity" evidence=IDA

GO:0015210 "uracil transmembrane transporter activity" evidence=IDA

GO:0015720 "allantoin transport" evidence=IGI

GO:0015857 "uracil transport" evidence=IGI

GO:0015931 "nucleobase-containing compound transport" evidence=IDA

GO:0042906 "xanthine transport" evidence=IGI

GO:0042907 "xanthine transmembrane transporter activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2063851 UPS4 "ureide permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 209/358 (58%), Positives = 247/358 (68%)

Query:     1 MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
             MY+VESKAGAI CM+ SL  LG+WPAI+TLLERRGR PQHT+LD+   NLLAAI+IAF+L
Sbjct:     1 MYVVESKAGAIGCMILSLCCLGSWPAILTLLERRGRLPQHTFLDFATANLLAAIVIAFSL 60

Query:    61 GEFGDA---RPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLXXXXXXX 117
             GE G +   +P+F  QL +  DNWPSVL A+AGGV+LSIGNLATQYA+AFVGL       
Sbjct:    61 GEIGKSTFLKPDFTTQLPQ--DNWPSVLLAVAGGVLLSIGNLATQYAFAFVGLSVTEVIT 118

Query:   118 XXXXXXXXXXFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSXXXXXXXXXXXXPSD 177
                        NYFLD+KINKAEILFPG+ CFL+AV LG+AVH+S            PS+
Sbjct:   119 ASITVVIGTTLNYFLDNKINKAEILFPGVGCFLIAVFLGAAVHASNAADVKEKLKSLPSE 178

Query:   178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
                 +    I    E  PE    D E       K KAGTAGF VE+EN+R+IKVFGKSI+
Sbjct:   179 DLYSS----IENG-EDKPEIEKTDVESQEKLAEKAKAGTAGFYVELENKRAIKVFGKSIM 233

Query:   238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
             IGL IT FAG+  SLFSPAFNLATNDQW  L KGVP L+VYTAFFYFS++GF+I+LILN+
Sbjct:   234 IGLFITLFAGISLSLFSPAFNLATNDQWSTLPKGVPKLVVYTAFFYFSIAGFLISLILNL 293

Query:   298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMXXXXXXXXXXXXVQ 355
              FL+ P++   RSS K Y+ D  GRGWA+ AG LCGFGNGLQFM            VQ
Sbjct:   294 IFLYRPMVGLARSSLKKYIYDSKGRGWAVFAGFLCGFGNGLQFMGGQAAGYAAADSVQ 351


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.142   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      385       344   0.00097  116 3  11 22  0.43    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  229 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.83u 0.12s 24.95t   Elapsed:  00:00:02
  Total cpu time:  24.83u 0.12s 24.95t   Elapsed:  00:00:02
  Start:  Mon May 20 19:48:07 2013   End:  Mon May 20 19:48:09 2013

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPR7	UPS1_ARATH	No assigned EC number	0.7222	0.8441	0.8333	yes	no
Q41706	UPSA3_VIGUN	No assigned EC number	0.6723	0.8805	0.9015	N/A	no
Q9ZQ89	UPS2_ARATH	No assigned EC number	0.7094	0.8961	0.8668	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	385
pfam07168	336	pfam07168, Ureide_permease, Ureide permease	0.0

>gnl|CDD|191696 pfam07168, Ureide_permease, Ureide permease

 Score =  554 bits (1428), Expect = 0.0
 Identities = 251/345 (72%), Positives = 281/345 (81%), Gaps = 12/345 (3%)

Query: 14  MLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDA---RPNF 70
           M+ SL FLGTWPA++TLLERRGR PQHTYLDY++TNLLAA +IAFT GE G      PNF
Sbjct: 1   MVLSLLFLGTWPALLTLLERRGRLPQHTYLDYSVTNLLAAAVIAFTFGEIGKTSPGMPNF 60

Query: 71  VYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNY 130
             QLT+  DNWPSVLFAMAGG+VLSIGNLA+QYAWAFVGLSVTEVI++SITVVIG+T NY
Sbjct: 61  FTQLTQ--DNWPSVLFAMAGGIVLSIGNLASQYAWAFVGLSVTEVITASITVVIGTTLNY 118

Query: 131 FLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTS 190
           FLDD+IN+AEILFPG+ACFL+AV LGSAVHSSNAADNK KLN   +     + ++     
Sbjct: 119 FLDDRINRAEILFPGVACFLIAVFLGSAVHSSNAADNKEKLNAFENYQSEFSISSL---- 174

Query: 191 CETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCF 250
            E +     +D E G       KAGTA FLVE+E RR+IKVFGKS  IGL IT FAG+CF
Sbjct: 175 -ELMSRMNSEDLENGEAD--DAKAGTAEFLVELEKRRAIKVFGKSTWIGLGITLFAGICF 231

Query: 251 SLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRS 310
           SLFSPAFNLATNDQWH L+KGVPHL VYTAFFYFS+S FVIA+ILNIRFL+ P+L   RS
Sbjct: 232 SLFSPAFNLATNDQWHTLRKGVPHLTVYTAFFYFSISCFVIAIILNIRFLYRPVLGLPRS 291

Query: 311 SFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ 355
           S KAYL DWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ
Sbjct: 292 SLKAYLGDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ 336

Heterocyclic nitrogen compounds may serve as nitrogen sources or nitrogen transport compounds in plants that are not able to fix nitrogen. This family represents ureide permease, a transporter of a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine; it has 10 putative transmembrane domains with a large cytosolic central domain containing a 'Walker A' motif. Ureide permease is likely to transport other purine degradation products when nitrogen sources are low. Transport is dependent on glucose and a proton gradient. The family is found in bacteria, plants and yeast. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	100.0
PRK13499	345	rhamnose-proton symporter; Provisional	100.0
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.65
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.57
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.5
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	98.48
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	98.42
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.54
PRK13499	345	rhamnose-proton symporter; Provisional	93.55
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	92.25
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	91.55
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	90.71
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	89.63
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	89.0
PRK15430	296	putative chloramphenical resistance permease RarD;	88.89

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=100.00  E-value=4.9e-140  Score=1016.78  Aligned_cols=333  Identities=66%  Similarity=1.097  Sum_probs=314.8

Q ss_pred             HHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCC---CCCcchHhhhhhcccCchhHHHHHHH
Q 016667           14 MLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFG---DARPNFVYQLTELKDNWPSVLFAMAG   90 (385)
Q Consensus        14 m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG---~~~~nFl~qL~Q~~~~~~sv~~AmaG   90 (385)
                      |++||+|||||||+|||+|||||+||||||||+|||+|+|+++|||+||+|   +++|||++||+|  |||||+++||+|
T Consensus         1 M~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q--~n~~sv~~A~aG   78 (336)
T PF07168_consen    1 MVITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQ--ANWPSVLFAMAG   78 (336)
T ss_pred             CeeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhc--CChHHHHHHHHh
Confidence            789999999999999999999999999999999999999999999999999   567999999999  999999999999


Q ss_pred             HHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeeecccCCCceeeEcchhHHHHHHHHHhhhhcccchhchHHh
Q 016667           91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAK  170 (385)
Q Consensus        91 GvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~r~n~a~iLFpGV~cfliAI~L~a~ah~sNaad~~~K  170 (385)
                      |++||+|||++|||||++||||||||++|||||+||++|||+|||+|||+||||||+||+|||++|+++|+||++|+|+|
T Consensus        79 GvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lga~ah~sn~~d~~~k  158 (336)
T PF07168_consen   79 GVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILGAAAHKSNAADNKAK  158 (336)
T ss_pred             hHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHHHHHHhcchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccchhHHHHHHHHHHh
Q 016667          171 LNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCF  250 (385)
Q Consensus       171 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~ia~~aG~~~  250 (385)
                      +++++++++..+.++     .+...+.++||+|++.  ++|+|+|||+||+|+|+||||||+||++++|+.|++++|+|+
T Consensus       159 l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~gta~~l~~le~~rsikv~g~~~~~Gl~i~~faG~c~  231 (336)
T PF07168_consen  159 LKNFPNSYSRSTVSS-----AEMGFELESKDLENGE--AEKAKAGTAEFLIELENKRSIKVFGSSTLIGLGIAFFAGLCF  231 (336)
T ss_pred             hhcCCCccccccccc-----cccccccCccchhcCC--cccccccHHHHHHHHHhhhhhhhccccceeeehHHHHHhHHH
Confidence            987644343333222     2223333677777665  789999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHHHHHH
Q 016667          251 SLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGL  330 (385)
Q Consensus       251 s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~LaG~  330 (385)
                      |+|||+||+|||||||+|+||||||+|||||||||++||++++++|++|||||++|.||||+++|++||+||.||+|||+
T Consensus       232 slFSPafNlAtNDqwhtL~~gvP~L~VYtafFyFs~s~fv~~~~lni~~Ly~P~~g~p~Ssl~ay~~D~~gR~wa~lAG~  311 (336)
T PF07168_consen  232 SLFSPAFNLATNDQWHTLKPGVPHLVVYTAFFYFSLSCFVVAIILNIWFLYRPVLGVPKSSLKAYLKDWNGRGWAFLAGL  311 (336)
T ss_pred             HhcCchhhccccccccccCCCCCceEEEeehHHHHHHHHHHHHHHHhhheeccccCCChhhHHHHhhccCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhhccccchhhhHHHHHH
Q 016667          331 LCGFGNGLQFMGGQAAGYAAADAVQ  355 (385)
Q Consensus       331 iwg~Gn~lqfmggqaAGyAaAdavq  355 (385)
                      +||+||++|||||||||||||||||
T Consensus       312 lCg~GNglQFmgGQAaGYAaADaVQ  336 (336)
T PF07168_consen  312 LCGFGNGLQFMGGQAAGYAAADAVQ  336 (336)
T ss_pred             HHhCCceeeecccchhhhhhhhhcC
Confidence            9999999999999999999999998

Transport is dependent on glucose and a proton gradient [].

>PRK13499 rhamnose-proton symporter; Provisional

Probab=100.00  E-value=5.5e-36  Score=295.68  Aligned_cols=270  Identities=15%  Similarity=0.127  Sum_probs=232.6

Q ss_pred             cchhHHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhH
Q 016667            5 ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV   84 (385)
Q Consensus         5 es~~~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv   84 (385)
                      ++-...+.+|+++++|||||.+.+|. -|+||+ |.| || +.++ +..++..+|+|+++.  |+|.++++|  .+...+
T Consensus         3 ~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~w-E~~-W~-v~gi-~~wl~~~~~~g~~~~--~~f~~~~~~--~~~~~~   73 (345)
T PRK13499          3 NAIILGIIWHLIGGASSGSFYAPFKK-VKKWSW-ETM-WS-VGGI-FSWLILPWLIAALLL--PDFWAYYSS--FSGSTL   73 (345)
T ss_pred             chhHHHHHHHHHHHHHhhcccccccc-cCCCch-hHH-HH-HHHH-HHHHHHHHHHHHHHh--hhHHHHHHh--cCHHHH
Confidence            45667899999999999999999998 788999 887 99 6666 799999999999997  999999999  999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeee---------eeecccCCCceeeEcchhHHHHHHHHH
Q 016667           85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTF---------NYFLDDKINKAEILFPGIACFLVAVGL  155 (385)
Q Consensus        85 ~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~l---------NYfld~r~n~a~iLFpGV~cfliAI~L  155 (385)
                      .+++++|+.+++||+....++.+.|+|+++||+.|+++|+||.+         ||+..+++   .+++.||++.+++|++
T Consensus        74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g---~~~~~gv~liliGi~l  150 (345)
T PRK13499         74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGG---RMTLLGVLVALIGVAI  150 (345)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchH---HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999         99998888   4599999999999999


Q ss_pred             hhhhcccchhchHHhhcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcc
Q 016667          156 GSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKS  235 (385)
Q Consensus       156 ~a~ah~sNaad~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~  235 (385)
                      .+.|+.        |.++  + +                     +++|                    ++       +++
T Consensus       151 ~s~Ag~--------~k~~--~-~---------------------~~~~--------------------~~-------~~~  171 (345)
T PRK13499        151 VGRAGQ--------LKER--K-M---------------------GIKK--------------------AE-------EFN  171 (345)
T ss_pred             HHHhhh--------hccc--c-c---------------------cccc--------------------cc-------ccc
Confidence            999993        2221  0 0                     0000                    00       345


Q ss_pred             cchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHH---HHHHHHHHHHHHHHhcCcCCCCCcCcH
Q 016667          236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFS---VSGFVIALILNIRFLFSPILDTHRSSF  312 (385)
Q Consensus       236 ~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FS---v~~fv~~~ilN~~lm~~Pv~G~p~ss~  312 (385)
                      .+||+++++++|+.++.|+++++.++..+..  .+..+..++|++...+.   +|.|++|+++|.+.|++   + ++.+.
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~--a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k---~-~~~~~  245 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEA--AAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAK---N-KDLSL  245 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhh--hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---C-CCccc
Confidence            7899999999999999999999999863322  35567788999999999   99999999999999998   3 33566


Q ss_pred             HHHhhc-----CCCchHHHHHHHHHhhchhhhhccccchhhhHH
Q 016667          313 KAYLND-----WNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAA  351 (385)
Q Consensus       313 ~~Y~~d-----~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyAaA  351 (385)
                      ++|++.     ++.|..++|+|++|++||.+.+|+.+++|-+.+
T Consensus       246 ~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~  289 (345)
T PRK13499        246 KADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYD  289 (345)
T ss_pred             chhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence            677775     679999999999999999999999998865443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.65  E-value=6.4e-16  Score=149.32  Aligned_cols=211  Identities=20%  Similarity=0.263  Sum_probs=157.3

Q ss_pred             eeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccC--chhHHHHHHHHHHHhhHHHHHHHHHHhhcceeeeee
Q 016667           39 QHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDN--WPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVI  116 (385)
Q Consensus        39 qh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~--~~sv~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi  116 (385)
                      ..=-+--++|.++++++..+.               .|++-+  ..+++.++++|+.+++||+....+....|+|.|+|+
T Consensus        13 ~~Q~lG~t~Gali~alv~~~~---------------~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPi   77 (269)
T PF06800_consen   13 ANQILGTTIGALIFALVVFLF---------------RQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPI   77 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------hCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeecc
Confidence            333445566777777666654               232233  478999999999999999999999999999999999


Q ss_pred             ccceeeeeeeeeee--ecccCCCc-eeeEcchhHHHHHHHHHhhhhcccchhchHHhhcCCCCCCCCCCCccccCCcCCC
Q 016667          117 SSSITVVIGSTFNY--FLDDKINK-AEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCET  193 (385)
Q Consensus       117 ~~glavViGt~lNY--fld~r~n~-a~iLFpGV~cfliAI~L~a~ah~sNaad~~~Kl~~~~~~~~~~~~~~~~~~~~~~  193 (385)
                      +.|+.+|.++.+++  |.|-+..+ ..+-+.+++++++.++|.+...         |-+     +               
T Consensus        78 Stg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~---------~~~-----~---------------  128 (269)
T PF06800_consen   78 STGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD---------KKS-----D---------------  128 (269)
T ss_pred             chhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc---------ccc-----c---------------
Confidence            99999999999886  67666533 2334667777777777776522         110     0               


Q ss_pred             CCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCC
Q 016667          194 LPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVP  273 (385)
Q Consensus       194 ~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~  273 (385)
                            ++++                             +++.+||+...+++.+-+ .+|+.+..+            .
T Consensus       129 ------~~~~-----------------------------~~~~~kgi~~Ll~stigy-~~Y~~~~~~------------~  160 (269)
T PF06800_consen  129 ------KSSS-----------------------------KSNMKKGILALLISTIGY-WIYSVIPKA------------F  160 (269)
T ss_pred             ------cccc-----------------------------ccchhhHHHHHHHHHHHH-HHHHHHHHh------------c
Confidence                  0000                             224578888877766655 557766555            4


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHHHHHHHHhhchhhhhccccchhhhHHHH
Q 016667          274 HLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA  353 (385)
Q Consensus       274 ~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyAaAda  353 (385)
                      +.++|+++|-.|+|.++.++++|... ++|+..             +.++..+++|++|++||.+.+++.+..|+|+|+.
T Consensus       161 ~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~-------------k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~  226 (269)
T PF06800_consen  161 HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFE-------------KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFT  226 (269)
T ss_pred             CCChhHhHHHHHHHHHHHHHHHhhcc-cccccc-------------cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhh
Confidence            56799999999999999999999887 444322             2466789999999999999999999999999998


Q ss_pred             HH
Q 016667          354 VQ  355 (385)
Q Consensus       354 vq  355 (385)
                      +-
T Consensus       227 lS  228 (269)
T PF06800_consen  227 LS  228 (269)
T ss_pred             HH
Confidence            64

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.57  E-value=3.7e-15  Score=142.21  Aligned_cols=240  Identities=17%  Similarity=0.235  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHH
Q 016667           10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA   89 (385)
Q Consensus        10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Ama   89 (385)
                      .+.+++++++||||++...|...  +..|++.. +-+++.++..++.+++-    .  |.      .  +++..+.++++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~-~~~~g~l~~~~~~~~~~----~--~~------~--~~~~~~~~g~l   64 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL-GTTFGALILSIAIAIFV----L--PE------F--WALSIFLVGLL   64 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH-HHHHHHHHHHHHHHHHh----C--Cc------c--cccHHHHHHHH
Confidence            47899999999999999999877  44555554 67777777777776631    0  11      1  44678889999


Q ss_pred             HHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeeec--ccCC-CceeeEcchhHHHHHHHHHhhhhcccchhc
Q 016667           90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFL--DDKI-NKAEILFPGIACFLVAVGLGSAVHSSNAAD  166 (385)
Q Consensus        90 GGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYfl--d~r~-n~a~iLFpGV~cfliAI~L~a~ah~sNaad  166 (385)
                      +|+.+++||++...++...|+|+|+|+..++..++++...++.  |.+. .+..+...|+++.++.+++-+..+      
T Consensus        65 ~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~------  138 (290)
T TIGR00776        65 SGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK------  138 (290)
T ss_pred             HHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc------
Confidence            9999999999999999999999999999999999998888763  2222 123344566666666666642211      


Q ss_pred             hHHhhcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccchhHHHHHHH
Q 016667          167 NKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFA  246 (385)
Q Consensus       167 ~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~ia~~a  246 (385)
                          .    + +                    .++.+                             .++.+||+..++++
T Consensus       139 ----~----~-~--------------------~~~~~-----------------------------~~~~~~Gi~~~l~s  160 (290)
T TIGR00776       139 ----D----K-S--------------------AGIKS-----------------------------EFNFKKGILLLLMS  160 (290)
T ss_pred             ----c----c-c--------------------ccccc-----------------------------ccchhhHHHHHHHH
Confidence                0    0 0                    00000                             01346899999999


Q ss_pred             HHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHH
Q 016667          247 GVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWAL  326 (385)
Q Consensus       247 G~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~  326 (385)
                      |+++++..-+....             +.+|++..|...++.++.+.++|....++    .|      + . .+.-+..+
T Consensus       161 g~~y~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~------~-~-~~~~~~~~  215 (290)
T TIGR00776       161 TIGYLVYVVVAKAF-------------GVDGLSVLLPQAIGMVIGGIIFNLGHILA----KP------L-K-KYAILLNI  215 (290)
T ss_pred             HHHHHHHHHHHHHc-------------CCCcceehhHHHHHHHHHHHHHHHHHhcc----cc------h-H-HHHHHHHH
Confidence            99997766554422             15689999999999999999999766211    11      1 1 11223477


Q ss_pred             HHHHHHhhchhhhhcccc-chhhhHHHHHH
Q 016667          327 LAGLLCGFGNGLQFMGGQ-AAGYAAADAVQ  355 (385)
Q Consensus       327 LaG~iwg~Gn~lqfmggq-aAGyAaAdavq  355 (385)
                      +.|++|++++.+.+++.+ ..|++.+.-+-
T Consensus       216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls  245 (290)
T TIGR00776       216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLS  245 (290)
T ss_pred             HHHHHHHHHHHHHHHHcccccchhhHHHHH
Confidence            799999999999999998 88887776543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.50  E-value=7.2e-08  Score=93.75  Aligned_cols=237  Identities=19%  Similarity=0.260  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHH
Q 016667           10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA   89 (385)
Q Consensus        10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Ama   89 (385)
                      .+..-++-++.||+-|-+   +.+++--|++-.+--+++-+++|++..+.               .+|--++..+.+++.
T Consensus         3 ~~liaL~P~l~WGsip~v---~~k~GG~p~qQ~lGtT~GALifaiiv~~~---------------~~p~~T~~~~iv~~i   64 (288)
T COG4975           3 DLLIALLPALGWGSIPLV---ANKFGGKPYQQTLGTTLGALIFAIIVFLF---------------VSPELTLTIFIVGFI   64 (288)
T ss_pred             hHHHHHHHHHHhccccee---eeecCCChhHhhhhccHHHHHHHHHHhee---------------ecCccchhhHHHHHH
Confidence            355667889999998865   45556667888899999999999998876               122266779999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeeecccCCCcee---eEcchhHHHHHHHHHhhhhcccchhc
Q 016667           90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAE---ILFPGIACFLVAVGLGSAVHSSNAAD  166 (385)
Q Consensus        90 GGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~r~n~a~---iLFpGV~cfliAI~L~a~ah~sNaad  166 (385)
                      +|...++|.+.-.=|+.+.|.|.|.|++.|.=+|.++..--|.=..=.++.   +=|..++++++.+.+.+.-       
T Consensus        65 sG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~-------  137 (288)
T COG4975          65 SGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQ-------  137 (288)
T ss_pred             hhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeee-------
Confidence            999999999999999999999999999999999887776655322111111   1122233333333333220       


Q ss_pred             hHHhhcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccchhHHHHHHH
Q 016667          167 NKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFA  246 (385)
Q Consensus       167 ~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~ia~~a  246 (385)
                         +                          +++||+|+                            .++-+||+.+-++.
T Consensus       138 ---~--------------------------~~nk~~~~----------------------------~~n~kkgi~~L~iS  160 (288)
T COG4975         138 ---D--------------------------RNNKEEEN----------------------------PSNLKKGIVILLIS  160 (288)
T ss_pred             ---c--------------------------cccccccC----------------------------hHhhhhheeeeeee
Confidence               0                          01122221                            22345676664443


Q ss_pred             HHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHH
Q 016667          247 GVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWAL  326 (385)
Q Consensus       247 G~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~  326 (385)
                          ++.|-.+.... +.+.        -...+|.+--|+|-.+++++++..=|      ++++.=..|+        -+
T Consensus       161 ----t~GYv~yvvl~-~~f~--------v~g~saiLPqAiGMv~~ali~~~~~~------~~~~~K~t~~--------ni  213 (288)
T COG4975         161 ----TLGYVGYVVLF-QLFD--------VDGLSAILPQAIGMVIGALILGFFKM------EKRFNKYTWL--------NI  213 (288)
T ss_pred             ----ccceeeeEeee-cccc--------ccchhhhhHHHHHHHHHHHHHhhccc------ccchHHHHHH--------HH
Confidence                33444333332 2222        23567888889999999999886543      2322222333        58


Q ss_pred             HHHHHHhhchhhhhccccchhhhHHHHHH
Q 016667          327 LAGLLCGFGNGLQFMGGQAAGYAAADAVQ  355 (385)
Q Consensus       327 LaG~iwg~Gn~lqfmggqaAGyAaAdavq  355 (385)
                      +-|++|++||-+-+++.|++|-|.+..+-
T Consensus       214 i~G~~Wa~GNl~ml~a~~~~GvAt~FSlS  242 (288)
T COG4975         214 IPGLIWAIGNLFMLLAAQKVGVATSFSLS  242 (288)
T ss_pred             hhHHHHHhhHHHHHHhhhhhceeeeeeHh
Confidence            89999999999999999999999988753

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=98.48  E-value=1e-07  Score=92.07  Aligned_cols=130  Identities=18%  Similarity=0.232  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHHH
Q 016667           11 IVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAG   90 (385)
Q Consensus        11 I~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~AmaG   90 (385)
                      +++|++|.++.||--.=.|-.+..  -+-.+-|=-++++++.++++.+..+.     |             +-.-.||+|
T Consensus         2 ~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~-----p-------------~f~p~amlg   61 (254)
T PF07857_consen    2 YIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGF-----P-------------PFYPWAMLG   61 (254)
T ss_pred             chhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCC-----C-------------cceeHHHhh
Confidence            468999999999998888765543  24577788999999999998887433     1             234589999


Q ss_pred             HHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeee---eecc-c-CCCceeeEcchhHHHHHHHHHhhhhc
Q 016667           91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFN---YFLD-D-KINKAEILFPGIACFLVAVGLGSAVH  160 (385)
Q Consensus        91 GvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lN---Yfld-~-r~n~a~iLFpGV~cfliAI~L~a~ah  160 (385)
                      |.++..||++..-.+--+||+++..+-.+..++.|=..-   .|.. + ...++.+=..|++|.++...+=+..-
T Consensus        62 G~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik  136 (254)
T PF07857_consen   62 GALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK  136 (254)
T ss_pred             hhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence            999999999999999999999999999988888875443   3422 2 33356666889999988888776654

The region concerned is approximately 280 residues long.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=98.42  E-value=1e-06  Score=88.48  Aligned_cols=263  Identities=19%  Similarity=0.260  Sum_probs=174.2

Q ss_pred             chhHHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhH-HHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhH
Q 016667            6 SKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDY-TMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV   84 (385)
Q Consensus         6 s~~~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY-~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv   84 (385)
                      +.-..|++.++.=+|-||.-.=+|-. |+|.. |-+..=. .+.-+++-.+.|+.      ..|+|.+-++|  .+.+.+
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsW-Es~Wlv~gi~swli~P~~~a~l------~ip~~~~i~~~--~~~~~l   73 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWSW-ESYWLVQGIFSWLIVPWLWALL------AIPDFFSIYSA--TPASTL   73 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCccH-HHHHHHHHHHHHHHHHHHHHHH------hCCcHHHHHHh--CChhHH
Confidence            34567888888889999988777753 33554 4332222 23334444555554      14899999999  888888


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeeecccC------CCceeeEcchhHHHHHHHHHhhh
Q 016667           85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDK------INKAEILFPGIACFLVAVGLGSA  158 (385)
Q Consensus        85 ~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~r------~n~a~iLFpGV~cfliAI~L~a~  158 (385)
                      +.+++=|+..-+|++----++.+.|+|.+..|..|++.++||.+-=+.+++      .+.-.++..||+..++.|.+.+.
T Consensus        74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~  153 (344)
T PF06379_consen   74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK  153 (344)
T ss_pred             HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999994443322      22345788999999999999988


Q ss_pred             hcccchhchHHhhcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccch
Q 016667          159 VHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILI  238 (385)
Q Consensus       159 ah~sNaad~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~  238 (385)
                      |-.       .|-++. + +                      +                             +.+++-+|
T Consensus       154 AG~-------~Ke~~~-~-~----------------------~-----------------------------~~efn~~k  173 (344)
T PF06379_consen  154 AGS-------MKEKEL-G-E----------------------E-----------------------------AKEFNFKK  173 (344)
T ss_pred             HHH-------hhhhhh-c-c----------------------c-----------------------------hhhhhhhh
Confidence            763       111100 0 0                      0                             00335679


Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCcccc-chhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhh
Q 016667          239 GLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIV-YTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLN  317 (385)
Q Consensus       239 Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~Ltp-YTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~  317 (385)
                      ||+|++++|++=+.|+-..+.+....-...+.|++.+-. =-++++-=.|-|+.|++.-.+.+.+   . +.-|+++|++
T Consensus       174 Gl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~---~-k~~s~~~d~~  249 (344)
T PF06379_consen  174 GLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAK---N-KNWSWKGDYS  249 (344)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhh---c-CCCccccccc
Confidence            999999999987777766655443222222334443322 1234555568888888766555432   1 1134555543


Q ss_pred             cC-----CCchHHHHHHHHHhh-----chhhhhcc
Q 016667          318 DW-----NGRGWALLAGLLCGF-----GNGLQFMG  342 (385)
Q Consensus       318 d~-----~gr~~a~LaG~iwg~-----Gn~lqfmg  342 (385)
                      ..     +.-.++.|+|.+|=.     |++=++|+
T Consensus       250 ~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg  284 (344)
T PF06379_consen  250 VAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLG  284 (344)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22     245678899999954     55556666

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.54  E-value=0.058  Score=53.20  Aligned_cols=121  Identities=20%  Similarity=0.256  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHH
Q 016667           10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA   89 (385)
Q Consensus        10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Ama   89 (385)
                      .+.+.++|-+.......+.|+..-++   ....+--++|+++.++++.+-.      .    +++.+     +..+..++
T Consensus       139 gi~~Ll~stigy~~Y~~~~~~~~~~~---~~~~lPqaiGm~i~a~i~~~~~------~----~~~~~-----k~~~~nil  200 (269)
T PF06800_consen  139 GILALLISTIGYWIYSVIPKAFHVSG---WSAFLPQAIGMLIGAFIFNLFS------K----KPFFE-----KKSWKNIL  200 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCh---hHhHHHHHHHHHHHHHHHhhcc------c----ccccc-----cchHHhhH
Confidence            45555556555555666666643322   4455566899999999998754      1    11122     34566789


Q ss_pred             HHHHHhhHHHHHHHHHHhhcceeeeeec---cceeeeeeeeeeeecccCCCceeeEcchhHHHHH
Q 016667           90 GGVVLSIGNLATQYAWAFVGLSVTEVIS---SSITVVIGSTFNYFLDDKINKAEILFPGIACFLV  151 (385)
Q Consensus        90 GGvvfnlgNl~lq~aia~aGLSVa~pi~---~glavViGt~lNYfld~r~n~a~iLFpGV~cfli  151 (385)
                      +|+++++||+....+..-.|.+++++++   +-++..-|..  ++.|.|. |.|+.+..++|+++
T Consensus       201 ~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~--il~E~Kt-~ke~~~~~~G~~Li  262 (269)
T PF06800_consen  201 TGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIF--ILKEKKT-KKEMIYTLIGLILI  262 (269)
T ss_pred             HHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhhe--EEEecCc-hhhHHHHHHHHHHH
Confidence            9999999999999999999999999987   3333333433  4667777 45777666665554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=93.55  E-value=0.11  Score=52.69  Aligned_cols=102  Identities=21%  Similarity=0.273  Sum_probs=68.6

Q ss_pred             ccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHH
Q 016667          235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKA  314 (385)
Q Consensus       235 ~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~  314 (385)
                      +...|++..+++++|.|.||=-+.+.-+=+|++              ||. ++.++.-++ ..+.+-  ..+.|  ++-+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~--------------~W~-v~gi~~wl~-~~~~~g--~~~~~--~f~~   63 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWET--------------MWS-VGGIFSWLI-LPWLIA--ALLLP--DFWA   63 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccccCCCchhH--------------HHH-HHHHHHHHH-HHHHHH--HHHhh--hHHH
Confidence            467899999999999999998777754445552              355 444433333 332222  12333  6667


Q ss_pred             HhhcC--CCchHHHHHHHHHhhchhhhhccccchhhh----HHHHHHH
Q 016667          315 YLNDW--NGRGWALLAGLLCGFGNGLQFMGGQAAGYA----AADAVQV  356 (385)
Q Consensus       315 Y~~d~--~gr~~a~LaG~iwg~Gn~lqfmggqaAGyA----aAdavqa  356 (385)
                      +++..  ..-.+++++|++|++||.+|+.+=+..|-+    ++-..|.
T Consensus        64 ~~~~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~l  111 (345)
T PRK13499         64 YYSSFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITL  111 (345)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHH
Confidence            77733  388899999999999999999876666554    4555554

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=92.25  E-value=1.1  Score=42.52  Aligned_cols=130  Identities=12%  Similarity=0.171  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHH
Q 016667           10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA   89 (385)
Q Consensus        10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Ama   89 (385)
                      ++.+-+++.+||-.|-...|-..++    ++...||.. .+.+.++..+.+-..  .++.+    +.  .++......++
T Consensus         2 ~~~~~~~aa~~~a~~~~~~k~~~~~----~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~~----~~--~~~~~~~~~~~   68 (281)
T TIGR03340         2 ALTLVVFSALMHAGWNLMAKSHADK----EPDFLWWAL-LAHSVLLTPYGLWYL--AQVGW----SR--LPATFWLLLAI   68 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCc----hhHHHHHHH-HHHHHHHHHHHHHhc--ccCCC----CC--cchhhHHHHHH
Confidence            5788899999999999988843333    222235444 221222222332110  01111    11  12223345666


Q ss_pred             HHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeee-cccCCCceeeEcchhHHHHHHHHH
Q 016667           90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPGIACFLVAVGL  155 (385)
Q Consensus        90 GGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYf-ld~r~n~a~iLFpGV~cfliAI~L  155 (385)
                      +|+.....+.++.++......+++.|+.... -++-+++-++ .++|.++.++  .|+++.++.+++
T Consensus        69 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-p~~~~l~~~~~~~e~~~~~~~--~g~~~~~~Gv~l  132 (281)
T TIGR03340        69 SAVANMVYFLGLAQAYHHADVGLVYPLARSS-PLLVAIWATLTLGETLSPLAW--LGILIITLGLLV  132 (281)
T ss_pred             HHHHHHHHHHHHHHHHhcCChhhhhhHHhhh-HHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHHHH
Confidence            7777778888999999999999988876543 3333333333 4566655454  377777766655

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=91.55  E-value=0.28  Score=47.97  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHHHHHHHHhhchhhhhccccchhhhHHHHH----HH
Q 016667          281 FFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAV----QV  356 (385)
Q Consensus       281 ~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyAaAdav----qa  356 (385)
                      -++.|.++|+.+++.|.+.      +.|+           =+.||+|||++|+.||.+..-.=+.+|-+.+-.+    +.
T Consensus        31 Qw~~~~~i~~~g~~v~~~~------~~p~-----------f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~   93 (254)
T PF07857_consen   31 QWVMCSGIFLVGLVVNLIL------GFPP-----------FYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNC   93 (254)
T ss_pred             HHHHHHHHHHHHHHHHHhc------CCCc-----------ceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHH
Confidence            4678999999999999874      2231           4789999999999999999887777777777654    44


Q ss_pred             HHhhcc
Q 016667          357 SFNACK  362 (385)
Q Consensus       357 ~~~~~~  362 (385)
                      +..+|.
T Consensus        94 l~Gw~~   99 (254)
T PF07857_consen   94 LTGWAS   99 (254)
T ss_pred             HHHHHH
Confidence            555553

The region concerned is approximately 280 residues long.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=90.71  E-value=2  Score=39.39  Aligned_cols=115  Identities=10%  Similarity=0.011  Sum_probs=65.0

Q ss_pred             hcChHHHHHh-hhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHHHHHHHhhHHH
Q 016667           21 LGTWPAIMTL-LERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNL   99 (385)
Q Consensus        21 wGTWpn~~kL-~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~AmaGGvvfnlgNl   99 (385)
                      ||+=....|. ++.....-+..++-+.++.++...+.-..            .+.+      +.......|++.+.+.++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------------~~~~------~~~~~~~~~~~~~~l~~~   62 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------------PPLK------RLLRLLLLGALQIGVFYV   62 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------------cCHh------HHHHHHHHHHHHHHHHHH
Confidence            5554445555 44433332456666666666554433221            1111      234567778888899999


Q ss_pred             HHHHHHHhhcceeeeeeccceeeeeeeeeeeecccCCCceeeEcchhHHHHHHHHH
Q 016667          100 ATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGL  155 (385)
Q Consensus       100 ~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~r~n~a~iLFpGV~cfliAI~L  155 (385)
                      +..+|....+.+.+-++....-+..-..-.-+..+|.++.++  .|+.+-++.+++
T Consensus        63 ~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~--~gi~i~~~Gv~l  116 (260)
T TIGR00950        63 LYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVL--LAAVLGLAGAVL  116 (260)
T ss_pred             HHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHH--HHHHHHHHhHHh
Confidence            999999998888775554322222222223345567755444  466666666655

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=89.63  E-value=0.082  Score=42.05  Aligned_cols=122  Identities=14%  Similarity=0.247  Sum_probs=76.1

Q ss_pred             HhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHHHHHHHhhHH
Q 016667           19 FFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGN   98 (385)
Q Consensus        19 lcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~AmaGGvvfnlgN   98 (385)
                      +|||+.....|..-++...++.+.|.+.++.. ..++..+. ++..      ..+.+.  .  ........|++...+++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~------~~~~~~--~--~~~~~~~~~~~~~~~~~   68 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLIL-GRKP------FKNLSP--R--QWLWLLFLGLLGTALAY   68 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhh-cccc------ccCCCh--h--hhhhhhHhhccceehHH
Confidence            58999999999888776666777777777765 22222222 2221      111111  1  22334555666678899


Q ss_pred             HHHHHHHHhhcceeeeeeccceeeeeeeeeeeeccc-CCCceeeEcchhHHHHHHHHH
Q 016667           99 LATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDD-KINKAEILFPGIACFLVAVGL  155 (385)
Q Consensus        99 l~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~-r~n~a~iLFpGV~cfliAI~L  155 (385)
                      ++.+++....+.+.+-++.. +..++..++-++.-+ +.+  ..-..|+.+.++++++
T Consensus        69 ~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~--~~~~~g~~l~~~g~~l  123 (126)
T PF00892_consen   69 LLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPS--WRQIIGIILIIIGVVL  123 (126)
T ss_pred             HHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHH
Confidence            99999999999888887765 455566666655433 332  2335566666666655

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=89.00  E-value=1.3  Score=42.83  Aligned_cols=93  Identities=13%  Similarity=0.140  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhc
Q 016667          239 GLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLND  318 (385)
Q Consensus       239 Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d  318 (385)
                      |+++++++++|.|.++.......  +|.          +.-.. -..++.++.....-.  .+.|     +      .++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~----------~~~~~-~~~~g~l~~~~~~~~--~~~~-----~------~~~   55 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGP----------YSQTL-GTTFGALILSIAIAI--FVLP-----E------FWA   55 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCH----------HHHHH-HHHHHHHHHHHHHHH--HhCC-----c------ccc
Confidence            67899999999999999886653  222          11111 133344433333222  2323     1      122


Q ss_pred             CCCchHHHHHHHHHhhchhhhhccccchhhhHH----HHHHHH
Q 016667          319 WNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAA----DAVQVS  357 (385)
Q Consensus       319 ~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyAaA----davqa~  357 (385)
                      +.--.+++++|++|++||-++|.+=+..|.+.|    ...|-.
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v   98 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLV   98 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHH
Confidence            345577999999999999999999999999999    656543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=88.89  E-value=0.31  Score=46.70  Aligned_cols=103  Identities=9%  Similarity=0.044  Sum_probs=68.7

Q ss_pred             cchhHHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhH
Q 016667            5 ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV   84 (385)
Q Consensus         5 es~~~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv   84 (385)
                      +++.-++++++++.++||+-+...|++++-... |...+.+.++.++...+.... ++    .+.+.++  .  .+++..
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~~~~~~~-~~~~~R~~~a~~~l~~~~~~~-~~----~~~~~~~--~--~~~~~~   73 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLIYYVPAD-EILTHRVIWSFFFMVVLMSIC-RQ----WSYLKTL--I--QTPQKI   73 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHH-cc----HHHHHHH--H--cCHHHH
Confidence            355667899999999999999999987542322 677788887755443333222 21    1112111  1  345565


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcceeeeeec
Q 016667           85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS  117 (385)
Q Consensus        85 ~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi~  117 (385)
                      ...++|+....+.+.+..+++.....+.+-.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~  106 (296)
T PRK15430         74 FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGY  106 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence            666688888888999999999988877765554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00