Citrus Sinensis ID: 016678


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
MWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
cHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
cHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHEHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHccccccccccccHHHHHHHccccccccccccccc
mwllllgspanqMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGtagvvasdmddgGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIhdgrdsvsmphnplvKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIrskignnecLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLItgtcagawtytkwhdRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYIcyaedpllihRWDAEFFNQMSETLHQRLQYRSARAREVltnnrfdshtqeslsv
MWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVltnnrfdshtqeslsv
MWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRwwlllvlsvslFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTamlmgmvlvglamvvvESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
*WLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQY************************
MWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETL******************************
MWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRF**********
MWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNN************
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query385 2.2.26 [Sep-21-2011]
Q869R1555 CTL-like protein DDB_G027 yes no 0.893 0.619 0.288 3e-36
Q6BIV4513 Protein PNS1 OS=Debaryomy yes no 0.766 0.575 0.237 3e-19
Q6CY85553 Protein PNS1 OS=Kluyverom yes no 0.623 0.433 0.258 6e-19
Q4I8E9538 Protein PNS1 OS=Gibberell yes no 0.6 0.429 0.275 8e-19
Q75EG5553 Protein PNS1 OS=Ashbya go yes no 0.589 0.410 0.275 6e-17
Q5AB93518 Protein PNS1 OS=Candida a N/A no 0.597 0.444 0.270 1e-16
Q4PIP8602 Protein PNS1 OS=Ustilago N/A no 0.589 0.377 0.261 5e-16
Q870V7554 Protein PNS1 OS=Neurospor N/A no 0.802 0.557 0.248 1e-15
Q6C938571 Protein PNS1 OS=Yarrowia yes no 0.831 0.560 0.249 1e-15
Q4WYG7537 Protein pns1 OS=Neosartor yes no 0.618 0.443 0.249 1e-15
>sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1 Back     alignment and function desciption
 Score =  152 bits (385), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 188/368 (51%), Gaps = 24/368 (6%)

Query: 2   WLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFF-WG-----VAFATAAALQFLYV 55
           WL L  + A  ++K S      +   + ++  +C  FF WG     + FA  A    L+ 
Sbjct: 201 WLKLAANHAESLIKYS------FFGAMGLMIGYCVFFFVWGAIYLGIIFAIMAFFIILFY 254

Query: 56  ISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDG 115
           IS   R+ FT  +L  AV ++   P V R  YV + +  +W  +W  G+A    + +  G
Sbjct: 255 ISCRSRIPFTATLLSNAVAIIKEYPSVIRAGYVSIFINFVWFIVW--GSAFARVNMVYTG 312

Query: 116 G-RWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAV 174
             +  + + L  +L+W   V+ NT+H  VSG++       G + V MPHNP + S R A+
Sbjct: 313 AIQTCINIYLVFTLYWVFHVIKNTLHTTVSGLLATWYFCSGPNGVGMPHNPTLGSARRAL 372

Query: 175 TTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFH----LVETLVRFFN 230
           TTS GSIC+GSL  + I TLR+  + +   I N   ++  + ++F+    ++ ++V+FFN
Sbjct: 373 TTSFGSICFGSLIISLIETLRYLSQMM---INNRNVVVKIIGYIFNCILSMLSSIVQFFN 429

Query: 231 KYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGA 290
            YA+  +A+YGK F  SA+  + +F++     ++  +  G  + +G +V  L+  +  GA
Sbjct: 430 TYAFTHVAIYGKSFCDSAKSTFTMFENRLGSTIINDNFVGTTIAIGGLVASLLL-SILGA 488

Query: 291 WTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQ 350
                + D  V  G+ A+ +G +++   + VV S+  S+++CY  +P ++     + +  
Sbjct: 489 LISIPF-DMSVYGGALALFIGYLVIITNLEVVYSSTISLFVCYVMEPEVLAHTKPQLYQL 547

Query: 351 MSETLHQR 358
            S T H R
Sbjct: 548 YSSTYHLR 555





Dictyostelium discoideum (taxid: 44689)
>sp|Q6BIV4|PNS1_DEBHA Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2 Back     alignment and function description
>sp|Q6CY85|PNS1_KLULA Protein PNS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q75EG5|PNS1_ASHGO Protein PNS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q5AB93|PNS1_CANAL Protein PNS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q4PIP8|PNS1_USTMA Protein PNS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q870V7|PNS1_NEUCR Protein PNS1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pns-1 PE=3 SV=1 Back     alignment and function description
>sp|Q6C938|PNS1_YARLI Protein PNS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q4WYG7|PNS1_ASPFU Protein pns1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pns1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
255576509 497 Protein PNS1, putative [Ricinus communis 0.981 0.760 0.878 0.0
225423919 504 PREDICTED: CTL-like protein DDB_G0274487 0.981 0.75 0.841 0.0
356534376440 PREDICTED: CTL-like protein DDB_G0274487 0.976 0.854 0.837 0.0
356574175 493 PREDICTED: CTL-like protein DDB_G0274487 0.979 0.764 0.827 0.0
357488431 486 Choline transporter-like protein 5-A [Me 0.968 0.767 0.825 1e-180
356498302459 PREDICTED: CTL-like protein DDB_G0274487 0.958 0.803 0.829 1e-180
449434644 502 PREDICTED: CTL-like protein DDB_G0274487 0.987 0.756 0.810 1e-177
357142674 518 PREDICTED: CTL-like protein DDB_G0274487 0.942 0.700 0.763 1e-164
242065550 530 hypothetical protein SORBIDRAFT_04g02403 0.963 0.7 0.750 1e-163
326491085 511 predicted protein [Hordeum vulgare subsp 0.963 0.726 0.745 1e-161
>gi|255576509|ref|XP_002529146.1| Protein PNS1, putative [Ricinus communis] gi|223531425|gb|EEF33259.1| Protein PNS1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/378 (87%), Positives = 355/378 (93%)

Query: 8   SPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTML 67
           S ANQM+KISVHILTTYLAVISVLCFWC+QFFWGVAFA  AALQFLYVISVI+RL FTML
Sbjct: 120 SRANQMMKISVHILTTYLAVISVLCFWCEQFFWGVAFAIGAALQFLYVISVIERLPFTML 179

Query: 68  VLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVS 127
           VLQKAVKMVWSLPEV RVAY FM VMLLWM IWSFG AGVVAS M++GGRWWLL+VLSVS
Sbjct: 180 VLQKAVKMVWSLPEVMRVAYAFMLVMLLWMAIWSFGAAGVVASSMENGGRWWLLVVLSVS 239

Query: 128 LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLF 187
           LFWTGAVLCNTVHVIVSGMVFLVLIHDGR++ SMP NPL+KSLRYAVTTS GSICYGSLF
Sbjct: 240 LFWTGAVLCNTVHVIVSGMVFLVLIHDGREAASMPPNPLLKSLRYAVTTSFGSICYGSLF 299

Query: 188 TAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRS 247
           TAAIRTLRWEIRG+RSKIG NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGK FN S
Sbjct: 300 TAAIRTLRWEIRGLRSKIGKNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNHS 359

Query: 248 ARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTA 307
           ARDAWELFQSTGVEALVAYDCSGAVLLMGT++ GLITGTC+G WT  KW+DRV+MVGSTA
Sbjct: 360 ARDAWELFQSTGVEALVAYDCSGAVLLMGTVLSGLITGTCSGVWTRIKWNDRVIMVGSTA 419

Query: 308 MLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAR 367
           MLMGMVLVG+AMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQ+SETLHQRLQ+RSARAR
Sbjct: 420 MLMGMVLVGVAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQLSETLHQRLQHRSARAR 479

Query: 368 EVLTNNRFDSHTQESLSV 385
           EV+++NRFD H +ES+ V
Sbjct: 480 EVVSSNRFDIHIRESIPV 497




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423919|ref|XP_002282011.1| PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera] gi|297737849|emb|CBI27050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356534376|ref|XP_003535731.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|356574175|ref|XP_003555227.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|357488431|ref|XP_003614503.1| Choline transporter-like protein 5-A [Medicago truncatula] gi|355515838|gb|AES97461.1| Choline transporter-like protein 5-A [Medicago truncatula] Back     alignment and taxonomy information
>gi|356498302|ref|XP_003517992.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|449434644|ref|XP_004135106.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] gi|449527986|ref|XP_004170988.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357142674|ref|XP_003572653.1| PREDICTED: CTL-like protein DDB_G0274487-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242065550|ref|XP_002454064.1| hypothetical protein SORBIDRAFT_04g024030 [Sorghum bicolor] gi|241933895|gb|EES07040.1| hypothetical protein SORBIDRAFT_04g024030 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|326491085|dbj|BAK05642.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326518310|dbj|BAJ88184.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
TAIR|locus:2031235488 AT1G25500 [Arabidopsis thalian 0.963 0.760 0.739 3.2e-145
DICTYBASE|DDB_G0274487555 DDB_G0274487 "Protein PNS1" [D 0.909 0.630 0.270 1.4e-34
TAIR|locus:2177110569 AT5G13760 "AT5G13760" [Arabido 0.802 0.543 0.266 1.3e-27
TAIR|locus:2079444482 AT3G03700 [Arabidopsis thalian 0.893 0.713 0.228 1.6e-15
TAIR|locus:2100865482 AT3G04440 [Arabidopsis thalian 0.893 0.713 0.228 1.6e-15
DICTYBASE|DDB_G0269978506 DDB_G0269978 [Dictyostelium di 0.701 0.533 0.229 2.1e-15
CGD|CAL0005194518 orf19.6077 [Candida albicans ( 0.350 0.260 0.333 3e-15
UNIPROTKB|Q5AB93518 PNS1 "Protein PNS1" [Candida a 0.350 0.260 0.333 3e-15
ASPGD|ASPL0000039512533 AN10377 [Emericella nidulans ( 0.594 0.429 0.274 1e-14
SGD|S000005687539 PNS1 "Protein of unknown funct 0.350 0.250 0.321 2e-13
TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
 Identities = 275/372 (73%), Positives = 303/372 (81%)

Query:     1 MWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVID 60
             +W LLLGS AN+M+K+SVHILTTYLAV+SVLCFWC  FFWG AFA  + LQFLYVISVID
Sbjct:   115 VWSLLLGSYANEMMKVSVHILTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVID 174

Query:    61 RLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRXXX 120
             RL FTMLVL+KA+K+VW LP+V  VA+ F  VMLLWM +WSFG AGVVAS M D GR   
Sbjct:   175 RLPFTMLVLRKALKLVWGLPKVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWL 234

Query:   121 XXXXXXXXFWTGAVLCNTVHVIVSGMVFLVLIHDGRD-SVSMPHNPLVKSLRYAVTTSLG 179
                     FWTGAVLCNTVHVIVSGMVF VL H G++ S S+P + LV SLRYAVTTS G
Sbjct:   235 LVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSFG 294

Query:   180 SICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAV 239
             SICYGSLFTAAIRTLRWEIRG RSKI  NECLLCCVDFLFHLVETLVRFFNKYAYVQIAV
Sbjct:   295 SICYGSLFTAAIRTLRWEIRGFRSKICGNECLLCCVDFLFHLVETLVRFFNKYAYVQIAV 354

Query:   240 YGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDR 299
             YGKGFN+SARDAWELFQSTGVEALVAYDCSGAVLLMGTI GGLITG+C G W + K+ DR
Sbjct:   355 YGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKYSDR 414

Query:   300 VVMVGSTXXXXXXXXXXXXXXXXESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRL 359
             V+MV ST                ESAVTSIYIC+AEDPLLI RWDA+F+ +MSE LH+RL
Sbjct:   415 VIMVASTAMLMGMVLVGLGMVVVESAVTSIYICFAEDPLLIQRWDADFYTEMSEVLHRRL 474

Query:   360 QYRSARAREVLT 371
             Q+RS+RAREVLT
Sbjct:   475 QHRSSRAREVLT 486




GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269978 DDB_G0269978 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0005194 orf19.6077 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AB93 PNS1 "Protein PNS1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000005687 PNS1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
pfam04515327 pfam04515, Choline_transpo, Plasma-membrane cholin 5e-77
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter Back     alignment and domain information
 Score =  240 bits (615), Expect = 5e-77
 Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 25/329 (7%)

Query: 39  FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMG 98
              + F     +  L +I +  R+   + +L+ A   V   P +  V  +    +  ++ 
Sbjct: 1   IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60

Query: 99  IWSFGTAGVVAS---DMDDGGR------------WWLLLVLSVSLFWTGAVLCNTVHVIV 143
           +W      +  S     ++GG               LL+ L   LFWT  V+    HV +
Sbjct: 61  LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120

Query: 144 SGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRS 203
           +G+V            +MP  P + S + A+T S GSIC+GSL  A I+ +R  +  +R 
Sbjct: 121 AGVVATWYFA--GGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRR 178

Query: 204 KIGNNE-----CLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 258
           K+  ++      LLCC+      +E  V + N+ AYV IA+YGKGF  SA+D WEL +  
Sbjct: 179 KLKGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRN 238

Query: 259 GVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRV---VMVGSTAMLMGMVLV 315
           G+ ALV     G VL +G +    +TG  A  W     +  +    +  + A L+  ++ 
Sbjct: 239 GLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIA 298

Query: 316 GLAMVVVESAVTSIYICYAEDPLLIHRWD 344
            + M V ES V +I++C+AEDP L+    
Sbjct: 299 SVFMSVYESGVDTIFVCFAEDPELLRNDG 327


This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 385
KOG1362577 consensus Choline transporter-like protein [Lipid 100.0
PF04515334 Choline_transpo: Plasma-membrane choline transport 100.0
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=1.4e-70  Score=561.33  Aligned_cols=361  Identities=31%  Similarity=0.525  Sum_probs=309.8

Q ss_pred             CHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hHHHH-HHHHHHHHHHHHHHH
Q 016678            1 MWLLLLGSPANQMLKISVHILTTYLAVISVLCFW-------------------------CDQFF-WGVAFATAAALQFLY   54 (385)
Q Consensus         1 ~wl~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~-~~ii~~i~~~l~~~~   54 (385)
                      +|+.++|.+++.++|....+....++...-.+++                         ..+.. .||++.++.++.+++
T Consensus       165 i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~  244 (577)
T KOG1362|consen  165 IFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLDAVGIVLTVISVVLVLY  244 (577)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999998876544333333323332                         13333 699999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhcccccc----------cCCCc---hHHHH
Q 016678           55 VISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD----------MDDGG---RWWLL  121 (385)
Q Consensus        55 ~~~~r~rI~~a~~ll~~a~~~i~~~p~l~~v~~~~~~~~~~~~~~w~~~~~g~~~~~----------~~~~~---~~~~~  121 (385)
                      .+.+|+||+++++++|+|+|++.+.|++.+.|..+.++.++|..+|+.+..+....+          .++++   .||++
T Consensus       245 ~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~gg~~~~~~~~~~~~~~~~~  324 (577)
T KOG1362|consen  245 IIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEGGCACTYSGGSLRILFWLL  324 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCceeeccCCcchhHhHHH
Confidence            999999999999999999999999999999999999999899999998766554444          11222   44555


Q ss_pred             HHHHHHHHHHHHHHhhccccceeceeeeeecccCCCCCCCCCchHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHH
Q 016678          122 LVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGI  201 (385)
Q Consensus       122 ~~~~f~~~W~~~~l~~~~~~tvAg~va~WYF~~~~~~~~~~~~p~~~s~~ra~~~h~GSi~~GSlivaiv~~lr~il~~~  201 (385)
                      ++..  ++|+++|+.|++|+++||++++|||++++  +|+|..|+..|++|+++||+||+|+|||++++++++|.++|++
T Consensus       325 vv~~--l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GSliv~iV~i~R~iL~~i  400 (577)
T KOG1362|consen  325 VVGS--LIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGSLLVALVRILRVILRYI  400 (577)
T ss_pred             HHHH--HHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHH
Confidence            5444  99999999999999999999999999874  7999999999999999999999999999999999999999999


Q ss_pred             HhccCC--c---hhHHHhHHHHHHHHHHHHHHHhHHhHhhHhhcCCChhHHHHHHHHHHHhccchhhhhhchhhHHHH-H
Q 016678          202 RSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLL-M  275 (385)
Q Consensus       202 ~~~~~~--~---~~l~~c~~c~l~~~e~~l~~~n~~Ayi~iai~G~~F~~Sak~a~~L~~~n~~~~~~~~~~~~~~l~-l  275 (385)
                      |+|.|+  |   ++++||++||+||+|++++++|||||+++|+||++||+||||+|++++|| ...+++.|.++++++ +
T Consensus       401 ~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N-v~~vv~~d~vs~~llfl  479 (577)
T KOG1362|consen  401 RHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN-VLRVVDVDLVSDFLLFL  479 (577)
T ss_pred             HHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHH
Confidence            998875  3   58999999999999999999999999999999999999999999999999 666899999999876 5


Q ss_pred             HHHHhHHHHHhhhhHhhhhhccC--chhHHHHHHHHHH-HHHHHHhHhHHHHHHHHHHHHHhcccccccCCChhHHHHHH
Q 016678          276 GTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMS  352 (385)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~-~~v~~~f~~v~~~~vdTifvCf~eD~e~~~~~~p~~~~~m~  352 (385)
                      ||+.++..++ +++.+.+...++  +.+.+.+.++++| |++++.|+++++|+|||+|+||+||||+||++ ||+|++|+
T Consensus       480 gk~l~~~~~g-~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD~e~n~gs-~~~p~~~~  557 (577)
T KOG1362|consen  480 GKLLGAIGSG-VAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAEDPESNDGS-PEKPQFMS  557 (577)
T ss_pred             HHHHHHHHHH-HHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEecHhhcCCC-CCcceeee
Confidence            7766554444 567766666666  6778888999999 99999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHhcchhccc
Q 016678          353 ETLHQRLQYRSARARE  368 (385)
Q Consensus       353 ~~~~~~~~~~~~~~~~  368 (385)
                      |.+++.++++++.+++
T Consensus       558 ~~l~~~~~~~~~~~~~  573 (577)
T KOG1362|consen  558 EQLLEILGRSNKAPRV  573 (577)
T ss_pred             HHHHHhcccccccchh
Confidence            9999999999774443



>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00