Citrus Sinensis ID: 016678
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 385 | ||||||
| 255576509 | 497 | Protein PNS1, putative [Ricinus communis | 0.981 | 0.760 | 0.878 | 0.0 | |
| 225423919 | 504 | PREDICTED: CTL-like protein DDB_G0274487 | 0.981 | 0.75 | 0.841 | 0.0 | |
| 356534376 | 440 | PREDICTED: CTL-like protein DDB_G0274487 | 0.976 | 0.854 | 0.837 | 0.0 | |
| 356574175 | 493 | PREDICTED: CTL-like protein DDB_G0274487 | 0.979 | 0.764 | 0.827 | 0.0 | |
| 357488431 | 486 | Choline transporter-like protein 5-A [Me | 0.968 | 0.767 | 0.825 | 1e-180 | |
| 356498302 | 459 | PREDICTED: CTL-like protein DDB_G0274487 | 0.958 | 0.803 | 0.829 | 1e-180 | |
| 449434644 | 502 | PREDICTED: CTL-like protein DDB_G0274487 | 0.987 | 0.756 | 0.810 | 1e-177 | |
| 357142674 | 518 | PREDICTED: CTL-like protein DDB_G0274487 | 0.942 | 0.700 | 0.763 | 1e-164 | |
| 242065550 | 530 | hypothetical protein SORBIDRAFT_04g02403 | 0.963 | 0.7 | 0.750 | 1e-163 | |
| 326491085 | 511 | predicted protein [Hordeum vulgare subsp | 0.963 | 0.726 | 0.745 | 1e-161 |
| >gi|255576509|ref|XP_002529146.1| Protein PNS1, putative [Ricinus communis] gi|223531425|gb|EEF33259.1| Protein PNS1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/378 (87%), Positives = 355/378 (93%)
Query: 8 SPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTML 67
S ANQM+KISVHILTTYLAVISVLCFWC+QFFWGVAFA AALQFLYVISVI+RL FTML
Sbjct: 120 SRANQMMKISVHILTTYLAVISVLCFWCEQFFWGVAFAIGAALQFLYVISVIERLPFTML 179
Query: 68 VLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVS 127
VLQKAVKMVWSLPEV RVAY FM VMLLWM IWSFG AGVVAS M++GGRWWLL+VLSVS
Sbjct: 180 VLQKAVKMVWSLPEVMRVAYAFMLVMLLWMAIWSFGAAGVVASSMENGGRWWLLVVLSVS 239
Query: 128 LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLF 187
LFWTGAVLCNTVHVIVSGMVFLVLIHDGR++ SMP NPL+KSLRYAVTTS GSICYGSLF
Sbjct: 240 LFWTGAVLCNTVHVIVSGMVFLVLIHDGREAASMPPNPLLKSLRYAVTTSFGSICYGSLF 299
Query: 188 TAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRS 247
TAAIRTLRWEIRG+RSKIG NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGK FN S
Sbjct: 300 TAAIRTLRWEIRGLRSKIGKNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNHS 359
Query: 248 ARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTA 307
ARDAWELFQSTGVEALVAYDCSGAVLLMGT++ GLITGTC+G WT KW+DRV+MVGSTA
Sbjct: 360 ARDAWELFQSTGVEALVAYDCSGAVLLMGTVLSGLITGTCSGVWTRIKWNDRVIMVGSTA 419
Query: 308 MLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAR 367
MLMGMVLVG+AMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQ+SETLHQRLQ+RSARAR
Sbjct: 420 MLMGMVLVGVAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQLSETLHQRLQHRSARAR 479
Query: 368 EVLTNNRFDSHTQESLSV 385
EV+++NRFD H +ES+ V
Sbjct: 480 EVVSSNRFDIHIRESIPV 497
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423919|ref|XP_002282011.1| PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera] gi|297737849|emb|CBI27050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356534376|ref|XP_003535731.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356574175|ref|XP_003555227.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357488431|ref|XP_003614503.1| Choline transporter-like protein 5-A [Medicago truncatula] gi|355515838|gb|AES97461.1| Choline transporter-like protein 5-A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356498302|ref|XP_003517992.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449434644|ref|XP_004135106.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] gi|449527986|ref|XP_004170988.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357142674|ref|XP_003572653.1| PREDICTED: CTL-like protein DDB_G0274487-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
| >gi|242065550|ref|XP_002454064.1| hypothetical protein SORBIDRAFT_04g024030 [Sorghum bicolor] gi|241933895|gb|EES07040.1| hypothetical protein SORBIDRAFT_04g024030 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
| >gi|326491085|dbj|BAK05642.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326518310|dbj|BAJ88184.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 385 | ||||||
| TAIR|locus:2031235 | 488 | AT1G25500 [Arabidopsis thalian | 0.963 | 0.760 | 0.739 | 3.2e-145 | |
| DICTYBASE|DDB_G0274487 | 555 | DDB_G0274487 "Protein PNS1" [D | 0.909 | 0.630 | 0.270 | 1.4e-34 | |
| TAIR|locus:2177110 | 569 | AT5G13760 "AT5G13760" [Arabido | 0.802 | 0.543 | 0.266 | 1.3e-27 | |
| TAIR|locus:2079444 | 482 | AT3G03700 [Arabidopsis thalian | 0.893 | 0.713 | 0.228 | 1.6e-15 | |
| TAIR|locus:2100865 | 482 | AT3G04440 [Arabidopsis thalian | 0.893 | 0.713 | 0.228 | 1.6e-15 | |
| DICTYBASE|DDB_G0269978 | 506 | DDB_G0269978 [Dictyostelium di | 0.701 | 0.533 | 0.229 | 2.1e-15 | |
| CGD|CAL0005194 | 518 | orf19.6077 [Candida albicans ( | 0.350 | 0.260 | 0.333 | 3e-15 | |
| UNIPROTKB|Q5AB93 | 518 | PNS1 "Protein PNS1" [Candida a | 0.350 | 0.260 | 0.333 | 3e-15 | |
| ASPGD|ASPL0000039512 | 533 | AN10377 [Emericella nidulans ( | 0.594 | 0.429 | 0.274 | 1e-14 | |
| SGD|S000005687 | 539 | PNS1 "Protein of unknown funct | 0.350 | 0.250 | 0.321 | 2e-13 |
| TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 275/372 (73%), Positives = 303/372 (81%)
Query: 1 MWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVID 60
+W LLLGS AN+M+K+SVHILTTYLAV+SVLCFWC FFWG AFA + LQFLYVISVID
Sbjct: 115 VWSLLLGSYANEMMKVSVHILTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVID 174
Query: 61 RLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRXXX 120
RL FTMLVL+KA+K+VW LP+V VA+ F VMLLWM +WSFG AGVVAS M D GR
Sbjct: 175 RLPFTMLVLRKALKLVWGLPKVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWL 234
Query: 121 XXXXXXXXFWTGAVLCNTVHVIVSGMVFLVLIHDGRD-SVSMPHNPLVKSLRYAVTTSLG 179
FWTGAVLCNTVHVIVSGMVF VL H G++ S S+P + LV SLRYAVTTS G
Sbjct: 235 LVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSFG 294
Query: 180 SICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAV 239
SICYGSLFTAAIRTLRWEIRG RSKI NECLLCCVDFLFHLVETLVRFFNKYAYVQIAV
Sbjct: 295 SICYGSLFTAAIRTLRWEIRGFRSKICGNECLLCCVDFLFHLVETLVRFFNKYAYVQIAV 354
Query: 240 YGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDR 299
YGKGFN+SARDAWELFQSTGVEALVAYDCSGAVLLMGTI GGLITG+C G W + K+ DR
Sbjct: 355 YGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKYSDR 414
Query: 300 VVMVGSTXXXXXXXXXXXXXXXXESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRL 359
V+MV ST ESAVTSIYIC+AEDPLLI RWDA+F+ +MSE LH+RL
Sbjct: 415 VIMVASTAMLMGMVLVGLGMVVVESAVTSIYICFAEDPLLIQRWDADFYTEMSEVLHRRL 474
Query: 360 QYRSARAREVLT 371
Q+RS+RAREVLT
Sbjct: 475 QHRSSRAREVLT 486
|
|
| DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0269978 DDB_G0269978 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0005194 orf19.6077 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5AB93 PNS1 "Protein PNS1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| SGD|S000005687 PNS1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 385 | |||
| pfam04515 | 327 | pfam04515, Choline_transpo, Plasma-membrane cholin | 5e-77 |
| >gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 5e-77
Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 25/329 (7%)
Query: 39 FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMG 98
+ F + L +I + R+ + +L+ A V P + V + + ++
Sbjct: 1 IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60
Query: 99 IWSFGTAGVVAS---DMDDGGR------------WWLLLVLSVSLFWTGAVLCNTVHVIV 143
+W + S ++GG LL+ L LFWT V+ HV +
Sbjct: 61 LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120
Query: 144 SGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRS 203
+G+V +MP P + S + A+T S GSIC+GSL A I+ +R + +R
Sbjct: 121 AGVVATWYFA--GGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRR 178
Query: 204 KIGNNE-----CLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 258
K+ ++ LLCC+ +E V + N+ AYV IA+YGKGF SA+D WEL +
Sbjct: 179 KLKGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRN 238
Query: 259 GVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRV---VMVGSTAMLMGMVLV 315
G+ ALV G VL +G + +TG A W + + + + A L+ ++
Sbjct: 239 GLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIA 298
Query: 316 GLAMVVVESAVTSIYICYAEDPLLIHRWD 344
+ M V ES V +I++C+AEDP L+
Sbjct: 299 SVFMSVYESGVDTIFVCFAEDPELLRNDG 327
|
This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 385 | |||
| KOG1362 | 577 | consensus Choline transporter-like protein [Lipid | 100.0 | |
| PF04515 | 334 | Choline_transpo: Plasma-membrane choline transport | 100.0 |
| >KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=561.33 Aligned_cols=361 Identities=31% Similarity=0.525 Sum_probs=309.8
Q ss_pred CHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hHHHH-HHHHHHHHHHHHHHH
Q 016678 1 MWLLLLGSPANQMLKISVHILTTYLAVISVLCFW-------------------------CDQFF-WGVAFATAAALQFLY 54 (385)
Q Consensus 1 ~wl~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~-~~ii~~i~~~l~~~~ 54 (385)
+|+.++|.+++.++|....+....++...-.+++ ..+.. .||++.++.++.+++
T Consensus 165 i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~ 244 (577)
T KOG1362|consen 165 IFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLDAVGIVLTVISVVLVLY 244 (577)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998876544333333323332 13333 699999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhcccccc----------cCCCc---hHHHH
Q 016678 55 VISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD----------MDDGG---RWWLL 121 (385)
Q Consensus 55 ~~~~r~rI~~a~~ll~~a~~~i~~~p~l~~v~~~~~~~~~~~~~~w~~~~~g~~~~~----------~~~~~---~~~~~ 121 (385)
.+.+|+||+++++++|+|+|++.+.|++.+.|..+.++.++|..+|+.+..+....+ .++++ .||++
T Consensus 245 ~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~gg~~~~~~~~~~~~~~~~~ 324 (577)
T KOG1362|consen 245 IIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEGGCACTYSGGSLRILFWLL 324 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCceeeccCCcchhHhHHH
Confidence 999999999999999999999999999999999999999899999998766554444 11222 44555
Q ss_pred HHHHHHHHHHHHHHhhccccceeceeeeeecccCCCCCCCCCchHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHH
Q 016678 122 LVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGI 201 (385)
Q Consensus 122 ~~~~f~~~W~~~~l~~~~~~tvAg~va~WYF~~~~~~~~~~~~p~~~s~~ra~~~h~GSi~~GSlivaiv~~lr~il~~~ 201 (385)
++.. ++|+++|+.|++|+++||++++|||++++ +|+|..|+..|++|+++||+||+|+|||++++++++|.++|++
T Consensus 325 vv~~--l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GSliv~iV~i~R~iL~~i 400 (577)
T KOG1362|consen 325 VVGS--LIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGSLLVALVRILRVILRYI 400 (577)
T ss_pred HHHH--HHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHH
Confidence 5444 99999999999999999999999999874 7999999999999999999999999999999999999999999
Q ss_pred HhccCC--c---hhHHHhHHHHHHHHHHHHHHHhHHhHhhHhhcCCChhHHHHHHHHHHHhccchhhhhhchhhHHHH-H
Q 016678 202 RSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLL-M 275 (385)
Q Consensus 202 ~~~~~~--~---~~l~~c~~c~l~~~e~~l~~~n~~Ayi~iai~G~~F~~Sak~a~~L~~~n~~~~~~~~~~~~~~l~-l 275 (385)
|+|.|+ | ++++||++||+||+|++++++|||||+++|+||++||+||||+|++++|| ...+++.|.++++++ +
T Consensus 401 ~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N-v~~vv~~d~vs~~llfl 479 (577)
T KOG1362|consen 401 RHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN-VLRVVDVDLVSDFLLFL 479 (577)
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHH
Confidence 998875 3 58999999999999999999999999999999999999999999999999 666899999999876 5
Q ss_pred HHHHhHHHHHhhhhHhhhhhccC--chhHHHHHHHHHH-HHHHHHhHhHHHHHHHHHHHHHhcccccccCCChhHHHHHH
Q 016678 276 GTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMS 352 (385)
Q Consensus 276 g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~-~~v~~~f~~v~~~~vdTifvCf~eD~e~~~~~~p~~~~~m~ 352 (385)
||+.++..++ +++.+.+...++ +.+.+.+.++++| |++++.|+++++|+|||+|+||+||||+||++ ||+|++|+
T Consensus 480 gk~l~~~~~g-~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD~e~n~gs-~~~p~~~~ 557 (577)
T KOG1362|consen 480 GKLLGAIGSG-VAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAEDPESNDGS-PEKPQFMS 557 (577)
T ss_pred HHHHHHHHHH-HHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEecHhhcCCC-CCcceeee
Confidence 7766554444 567766666666 6778888999999 99999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcchhccc
Q 016678 353 ETLHQRLQYRSARARE 368 (385)
Q Consensus 353 ~~~~~~~~~~~~~~~~ 368 (385)
|.+++.++++++.+++
T Consensus 558 ~~l~~~~~~~~~~~~~ 573 (577)
T KOG1362|consen 558 EQLLEILGRSNKAPRV 573 (577)
T ss_pred HHHHHhcccccccchh
Confidence 9999999999774443
|
|
| >PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00