Citrus Sinensis ID: 016688

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
MRLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNFFKPLEEII
cccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHccccccccHHHHHHHHHHccccccccccEEEEcccccccccccHHHHHHHHHHcHHHccccHHHHHHHHHHcccccccccccccHHcHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHccccEEEcccccHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHcccccHHHHHHHHHHccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHc
ccHHEccccHHHHHHHHccccccccccccHcHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHHccEEEEcccHcHHHHHHHccccccEEEHccccHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHccccEEccccHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHccccHEEHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHc
mrlvqrlplMANSLAttglsktswqsrpllsfLRTQTLLNSLSLYPKINYLLLCscsqsqtspdfsnlileqsskrgplepglylvatpignleDITLRALRVLKSANVilsedtrhsgkllqyyniktpllsyhkfneSQREQTVLNRLKQGEIVALIsdagtpgisdpgtELAKLcvdekipvvpipgASAFVAALSasglatdeftfvgflpkharSRTERLMLSANEVKtqifyvpphkllqFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAkeafsshqpkgeitVLVEGKAicvvetpsedQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNFfkpleeii
mrlvqrlpLMANSLAttglsktswqsrpLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVilsedtrhsgkllQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISdagtpgisDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNFFKPLEEII
MRLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYlllcscsqsqTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTffflflqkflvflvfnffkplEEII
*****************GLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCS**********************EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAF*****KGEITVLVEGKAICVVETP***QLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNFFKPL****
*********MAN**************RPLLSFLRTQTLLNSLSLYPKI***********************************YLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHAR**TERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA***********LEKELRGLISA*H***MVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNFFKPLEEII
MRLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNFFKPLEEII
*RLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQS*KRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNFFKPLEEII
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MRLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNFFKPLEEII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query384 2.2.26 [Sep-21-2011]
P74038279 Ribosomal RNA small subun N/A no 0.664 0.913 0.482 4e-63
Q9KGL2289 Ribosomal RNA small subun yes no 0.604 0.802 0.467 4e-52
P45298283 Ribosomal RNA small subun yes no 0.572 0.777 0.468 1e-51
Q9CN04281 Ribosomal RNA small subun yes no 0.572 0.782 0.463 2e-51
Q9HVZ3282 Ribosomal RNA small subun yes no 0.570 0.776 0.488 1e-50
P67087286 Ribosomal RNA small subun N/A no 0.598 0.804 0.439 8e-49
P67088286 Ribosomal RNA small subun N/A no 0.598 0.804 0.439 8e-49
Q9KUD9288 Ribosomal RNA small subun yes no 0.575 0.767 0.457 3e-48
Q87B70273 Ribosomal RNA small subun yes no 0.580 0.816 0.446 2e-47
Q9PFV5273 Ribosomal RNA small subun yes no 0.580 0.816 0.442 5e-47
>sp|P74038|RSMI_SYNY3 Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsmI PE=3 SV=1 Back     alignment and function desciption
 Score =  242 bits (617), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 123/255 (48%), Positives = 162/255 (63%)

Query: 83  LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
           LYLVATPIGNL D+T RA+  L++ ++I +EDTRH+GKLLQ++ I TP +SYH  N   R
Sbjct: 4   LYLVATPIGNLGDMTPRAVETLQTVDLIAAEDTRHTGKLLQHFQITTPQISYHDHNRHGR 63

Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
            Q +L +L+ G+ +AL+SDAGTPGISDPG EL   C +  I V+PIPGA+A +AAL +SG
Sbjct: 64  TQELLAKLQAGQNIALVSDAGTPGISDPGQELVAACGEANIEVIPIPGATALIAALISSG 123

Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
           LATD F F GFL    R R + L   A E +T I Y  PH+LL  L +     G  R   
Sbjct: 124 LATDRFVFEGFLSTKNRPRQQLLQSLAQEERTIILYEAPHRLLATLTDLQTFLGQERSLT 183

Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGL 322
           +ARE+TK HE+FWRGTL  A   F+ + PKGE  +++ G       + SE+ L  ELR L
Sbjct: 184 VARELTKYHEQFWRGTLQTAIAYFTENTPKGEFCLVIAGATPEDRPSFSEENLRDELRSL 243

Query: 323 ISAGHNLSMVTTTLV 337
           ++ G   S  +  L 
Sbjct: 244 MAKGLTRSQASRQLA 258
Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 8
>sp|Q9KGL2|RSMI_BACHD Ribosomal RNA small subunit methyltransferase I OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|P45298|RSMI_HAEIN Ribosomal RNA small subunit methyltransferase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q9CN04|RSMI_PASMU Ribosomal RNA small subunit methyltransferase I OS=Pasteurella multocida (strain Pm70) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q9HVZ3|RSMI_PSEAE Ribosomal RNA small subunit methyltransferase I OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|P67087|RSMI_ECOLI Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli (strain K12) GN=rsmI PE=1 SV=1 Back     alignment and function description
>sp|P67088|RSMI_ECO57 Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli O157:H7 GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q9KUD9|RSMI_VIBCH Ribosomal RNA small subunit methyltransferase I OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q87B70|RSMI_XYLFT Ribosomal RNA small subunit methyltransferase I OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q9PFV5|RSMI_XYLFA Ribosomal RNA small subunit methyltransferase I OS=Xylella fastidiosa (strain 9a5c) GN=rsmI PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
255538768363 uroporphyrin-III methyltransferase, puta 0.841 0.889 0.723 1e-131
302142558374 unnamed protein product [Vitis vinifera] 0.835 0.858 0.693 1e-123
449469947365 PREDICTED: ribosomal RNA small subunit m 0.846 0.890 0.709 1e-122
225458161351 PREDICTED: ribosomal RNA small subunit m 0.817 0.894 0.699 1e-122
30693914343 tetrapyrrole (corrin/porphyrin)methylase 0.794 0.889 0.694 1e-118
297846856342 tetrapyrrole methylase family protein [A 0.729 0.818 0.732 1e-117
7767663366 F27F5.18 [Arabidopsis thaliana] 0.770 0.808 0.623 1e-108
363814508352 uncharacterized protein LOC100819709 [Gl 0.721 0.786 0.686 1e-108
242034467336 hypothetical protein SORBIDRAFT_01g02206 0.778 0.889 0.657 1e-103
115482004335 Os10g0414500 [Oryza sativa Japonica Grou 0.786 0.901 0.655 1e-103
>gi|255538768|ref|XP_002510449.1| uroporphyrin-III methyltransferase, putative [Ricinus communis] gi|223551150|gb|EEF52636.1| uroporphyrin-III methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/333 (72%), Positives = 273/333 (81%), Gaps = 10/333 (3%)

Query: 3   LVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQT---LLNSLSLYPKINYLLLCSCSQS 59
           L++RLP ++ +L     +  SW+  P  +F RT+     L S+S +PKI  L  C  +Q 
Sbjct: 4   LLRRLPPVSITLT----AALSWRQLPS-NFFRTELDLLSLKSISAHPKIPTLSFCFTTQ- 57

Query: 60  QTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG 119
             SPDF+NLILE SSKRG L+PGLYLV TPIGNLEDITLRALRVLKSA VIL+EDTRHSG
Sbjct: 58  -VSPDFTNLILEDSSKRGALKPGLYLVGTPIGNLEDITLRALRVLKSAQVILAEDTRHSG 116

Query: 120 KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV 179
           KLL YYNI TPLLSYHKFNESQRE  VL RLKQGEIVALISDAG PGISDPG +LAKLCV
Sbjct: 117 KLLHYYNITTPLLSYHKFNESQRECLVLKRLKQGEIVALISDAGMPGISDPGAQLAKLCV 176

Query: 180 DEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYV 239
           DE IPV+PIPG SA VAA+SASGL+TDEFTFVGFL KHARSR ERL+ SA+E +TQIFYV
Sbjct: 177 DENIPVIPIPGPSAVVAAISASGLSTDEFTFVGFLSKHARSRRERLIASADETRTQIFYV 236

Query: 240 PPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLV 299
           PPHKL +FL+ETS LFG SRRCVIARE+TK+HEEFWRGTLGEAKEAF+ HQPKGEIT+L+
Sbjct: 237 PPHKLSRFLDETSTLFGDSRRCVIAREMTKIHEEFWRGTLGEAKEAFADHQPKGEITLLI 296

Query: 300 EGKAICVVETPSEDQLEKELRGLISAGHNLSMV 332
           EGK  C+VETPSE QLE +L  LIS GH+LSM 
Sbjct: 297 EGKINCLVETPSESQLEHDLGDLISNGHSLSMA 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302142558|emb|CBI19761.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449469947|ref|XP_004152680.1| PREDICTED: ribosomal RNA small subunit methyltransferase I-like [Cucumis sativus] gi|449515758|ref|XP_004164915.1| PREDICTED: ribosomal RNA small subunit methyltransferase I-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225458161|ref|XP_002281008.1| PREDICTED: ribosomal RNA small subunit methyltransferase I-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|30693914|ref|NP_175126.2| tetrapyrrole (corrin/porphyrin)methylase [Arabidopsis thaliana] gi|34365739|gb|AAQ65181.1| At1g45110 [Arabidopsis thaliana] gi|110738768|dbj|BAF01308.1| hypothetical protein [Arabidopsis thaliana] gi|332193960|gb|AEE32081.1| tetrapyrrole (corrin/porphyrin)methylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297846856|ref|XP_002891309.1| tetrapyrrole methylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337151|gb|EFH67568.1| tetrapyrrole methylase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7767663|gb|AAF69160.1|AC007915_12 F27F5.18 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|363814508|ref|NP_001242889.1| uncharacterized protein LOC100819709 [Glycine max] gi|255635241|gb|ACU17975.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|242034467|ref|XP_002464628.1| hypothetical protein SORBIDRAFT_01g022060 [Sorghum bicolor] gi|241918482|gb|EER91626.1| hypothetical protein SORBIDRAFT_01g022060 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|115482004|ref|NP_001064595.1| Os10g0414500 [Oryza sativa Japonica Group] gi|78708633|gb|ABB47608.1| expressed protein [Oryza sativa Japonica Group] gi|110289078|gb|ABG66076.1| expressed protein [Oryza sativa Japonica Group] gi|113639204|dbj|BAF26509.1| Os10g0414500 [Oryza sativa Japonica Group] gi|215695389|dbj|BAG90580.1| unnamed protein product [Oryza sativa Japonica Group] gi|222612824|gb|EEE50956.1| hypothetical protein OsJ_31511 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
TAIR|locus:2028215343 AT1G45110 [Arabidopsis thalian 0.786 0.880 0.689 2.1e-107
UNIPROTKB|Q3AG07269 rsmI "Ribosomal RNA small subu 0.619 0.884 0.487 3.3e-56
TIGR_CMR|CHY_0055269 CHY_0055 "conserved hypothetic 0.619 0.884 0.487 3.3e-56
UNIPROTKB|Q74FF6286 rsmI "Ribosomal RNA small subu 0.617 0.828 0.485 2.4e-51
TIGR_CMR|GSU_0653286 GSU_0653 "tetrapyrrole methyla 0.617 0.828 0.485 2.4e-51
UNIPROTKB|Q820W0285 rsmI "Ribosomal RNA small subu 0.653 0.880 0.472 1.7e-50
TIGR_CMR|CBU_1739285 CBU_1739 "tetrapyrrole (Corrin 0.653 0.880 0.472 1.7e-50
UNIPROTKB|Q48EE8332 rsmI "Ribosomal RNA small subu 0.614 0.710 0.457 8.5e-49
UNIPROTKB|Q4K6I3290 yraL "Ribosomal RNA small subu 0.585 0.775 0.469 8.8e-47
TIGR_CMR|DET_0386274 DET_0386 "tetrapyrrole methyla 0.614 0.861 0.448 1.8e-46
TAIR|locus:2028215 AT1G45110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 211/306 (68%), Positives = 245/306 (80%)

Query:    31 SFLRTQTLLNSLSLYPKINYXXXXXXXXXXTSPDFSNLILEQSSKRGPLEPGLYLVATPI 90
             SFLRT TL    S+  +             +S +F++ + +  SKRGPL+PGLYLV TPI
Sbjct:     9 SFLRTSTL----SILFRSPILSTTAAISFCSSSEFADSVAKDDSKRGPLKPGLYLVGTPI 64

Query:    91 GNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRL 150
             GNLEDITLRA+RVL+SA+VILSEDTRHSGKLLQYYNIK  LLSYHKFNE+QREQ VL RL
Sbjct:    65 GNLEDITLRAIRVLRSADVILSEDTRHSGKLLQYYNIKAQLLSYHKFNEAQREQAVLTRL 124

Query:   151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTF 210
             KQGEIVALISDAGTPGISDPGT+LAK+C  E I V+PIPGA A VAALSASGL TDEFTF
Sbjct:   125 KQGEIVALISDAGTPGISDPGTQLAKMCAKENIDVIPIPGACAVVAALSASGLETDEFTF 184

Query:   211 VGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKM 270
             VGFLPKH+ +R ERL++S+NE +TQIFYVPPHKL QFLEET+  FG SR+CVIAREITK+
Sbjct:   185 VGFLPKHSGTRKERLIVSSNETRTQIFYVPPHKLSQFLEETTPYFGESRQCVIAREITKL 244

Query:   271 HEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLS 330
             HEEFWRG++ EAK+ F   QPKGEIT+L+EGK     E P+E QLE+ELRGLIS GH+LS
Sbjct:   245 HEEFWRGSIAEAKQEFLIRQPKGEITLLIEGKEETKAENPTESQLEEELRGLISDGHSLS 304

Query:   331 MVTTTL 336
                 T+
Sbjct:   305 TAVKTV 310
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0008168 "methyltransferase activity" evidence=IEA;ISS
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
UNIPROTKB|Q3AG07 rsmI "Ribosomal RNA small subunit methyltransferase I" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0055 CHY_0055 "conserved hypothetical protein TIGR00096" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q74FF6 rsmI "Ribosomal RNA small subunit methyltransferase I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0653 GSU_0653 "tetrapyrrole methylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q820W0 rsmI "Ribosomal RNA small subunit methyltransferase I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1739 CBU_1739 "tetrapyrrole (Corrin/Porphyrin) methylase domain protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q48EE8 rsmI "Ribosomal RNA small subunit methyltransferase I" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K6I3 yraL "Ribosomal RNA small subunit methyltransferase I" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0386 DET_0386 "tetrapyrrole methylase family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
cd11648218 cd11648, RsmI, Ribosomal RNA small subunit methylt 1e-125
COG0313275 COG0313, COG0313, Predicted methyltransferases [Ge 1e-106
PRK14994287 PRK14994, PRK14994, SAM-dependent 16S ribosomal RN 2e-66
TIGR00096276 TIGR00096, TIGR00096, probable S-adenosylmethionin 4e-48
cd11649229 cd11649, RsmI_like, Uncharacterized subfamily of t 4e-38
pfam00590202 pfam00590, TP_methylase, Tetrapyrrole (Corrin/Porp 1e-29
cd09815224 cd09815, TP_methylase, S-AdoMet dependent tetrapyr 2e-28
cd11724255 cd11724, TP_methylase_like, Uncharacterized subfam 2e-09
COG0007244 COG0007, CysG, Uroporphyrinogen-III methylase [Coe 4e-09
cd11647241 cd11647, Diphthine_synthase, Diphthine synthase, a 4e-08
COG1010249 COG1010, CobJ, Precorrin-3B methylase [Coenzyme me 9e-08
cd11646240 cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-m 3e-07
cd11645226 cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methy 2e-06
COG1798260 COG1798, DPH5, Diphthamide biosynthesis methyltran 3e-06
TIGR01466239 TIGR01466, cobJ_cbiH, precorrin-3B C17-methyltrans 4e-06
PLN02625263 PLN02625, PLN02625, uroporphyrin-III C-methyltrans 8e-06
TIGR01469236 TIGR01469, cobA_cysG_Cterm, uroporphyrin-III C-met 9e-06
COG2241210 COG2241, CobL, Precorrin-6B methylase 1 [Coenzyme 4e-05
PRK04160258 PRK04160, PRK04160, diphthine synthase; Provisiona 5e-05
TIGR02467204 TIGR02467, CbiE, precorrin-6y C5,15-methyltransfer 8e-05
COG2243234 COG2243, CobF, Precorrin-2 methylase [Coenzyme met 1e-04
cd11642233 cd11642, SUMT, Uroporphyrin-III C-methyltransferas 2e-04
TIGR01465247 TIGR01465, cobM_cbiF, precorrin-4 C11-methyltransf 5e-04
cd11644201 cd11644, Precorrin-6Y-methylase, Precorrin-6Y meth 7e-04
PRK05787210 PRK05787, PRK05787, cobalt-precorrin-6Y C(5)-methy 8e-04
PTZ00175270 PTZ00175, PTZ00175, diphthine synthase; Provisiona 0.001
PRK05576229 PRK05576, PRK05576, cobalt-precorrin-2 C(20)-methy 0.002
TIGR01467230 TIGR01467, cobI_cbiL, precorrin-2 C20-methyltransf 0.002
>gnl|CDD|212507 cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I, also known as rRNA (cytidine-2'-O-)-methyltransferase RsmI Back     alignment and domain information 
 Score =  359 bits (925), Expect = e-125
 Identities = 123/219 (56%), Positives = 159/219 (72%), Gaps = 1/219 (0%)

Query: 83  LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
           LYLVATPIGNLEDITLRAL VLK  ++I  EDTRH+ KLL +Y IK PL+SYH+ NE +R
Sbjct: 1   LYLVATPIGNLEDITLRALEVLKEVDLIACEDTRHTKKLLNHYGIKKPLISYHEHNEEER 60

Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
            + ++ RLK+G+ VAL+SDAGTP ISDPG  L +  ++  IPVVPIPG SA + ALSASG
Sbjct: 61  AEEIIERLKEGKSVALVSDAGTPLISDPGYRLVRAAIEAGIPVVPIPGPSALITALSASG 120

Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
           L TD FTF+GFLP+    R + L   ANE +T +FY  PH+LL+ LE+ + + G  R   
Sbjct: 121 LPTDRFTFLGFLPRKKGERRKLLEELANEPRTLVFYESPHRLLKTLEDLAEVGG-DREIA 179

Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG 301
           +ARE+TK+HEEF+RGTL E       ++PKGE  +++EG
Sbjct: 180 VARELTKLHEEFFRGTLSELLAHLEENEPKGEFVLVIEG 218

Proteins in this family catalyze the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA using S-adenosyl-L-methionine (SAM or Ado-Met) as the methyl donor. RsmI proteins employ the 30S subunit (not the 16S rRNA) as a substrate, suggesting that the methylation reaction occurs at a late step during 30S assembly in the cell. Length = 218
>gnl|CDD|223390 COG0313, COG0313, Predicted methyltransferases [General function prediction only] Back     alignment and domain information
>gnl|CDD|184956 PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|129204 TIGR00096, TIGR00096, probable S-adenosylmethionine-dependent methyltransferase, YraL family Back     alignment and domain information
>gnl|CDD|212508 cd11649, RsmI_like, Uncharacterized subfamily of the tetrapyrrole methylase family similar to ribosomal RNA small subunit methyltransferase I (RsmI) Back     alignment and domain information
>gnl|CDD|216012 pfam00590, TP_methylase, Tetrapyrrole (Corrin/Porphyrin) Methylases Back     alignment and domain information
>gnl|CDD|212499 cd09815, TP_methylase, S-AdoMet dependent tetrapyrrole methylases Back     alignment and domain information
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet dependent tetrapyrrole methylases Back     alignment and domain information
>gnl|CDD|223086 COG0007, CysG, Uroporphyrinogen-III methylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212506 cd11647, Diphthine_synthase, Diphthine synthase, also known as DPH5 Back     alignment and domain information
>gnl|CDD|223942 COG1010, CobJ, Precorrin-3B methylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212505 cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (CobJ/CbiH) Back     alignment and domain information
>gnl|CDD|212504 cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase, also named CobI or CbiL Back     alignment and domain information
>gnl|CDD|224711 COG1798, DPH5, Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|233424 TIGR01466, cobJ_cbiH, precorrin-3B C17-methyltransferase Back     alignment and domain information
>gnl|CDD|178232 PLN02625, PLN02625, uroporphyrin-III C-methyltransferase Back     alignment and domain information
>gnl|CDD|233426 TIGR01469, cobA_cysG_Cterm, uroporphyrin-III C-methyltransferase Back     alignment and domain information
>gnl|CDD|225150 COG2241, CobL, Precorrin-6B methylase 1 [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|235231 PRK04160, PRK04160, diphthine synthase; Provisional Back     alignment and domain information
>gnl|CDD|233878 TIGR02467, CbiE, precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit Back     alignment and domain information
>gnl|CDD|225152 COG2243, CobF, Precorrin-2 methylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212501 cd11642, SUMT, Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT) Back     alignment and domain information
>gnl|CDD|200107 TIGR01465, cobM_cbiF, precorrin-4 C11-methyltransferase Back     alignment and domain information
>gnl|CDD|212503 cd11644, Precorrin-6Y-methylase, Precorrin-6Y methyltransferase, the cobalamin biosynthesis enzyme CbiE Back     alignment and domain information
>gnl|CDD|235609 PRK05787, PRK05787, cobalt-precorrin-6Y C(5)-methyltransferase; Validated Back     alignment and domain information
>gnl|CDD|185500 PTZ00175, PTZ00175, diphthine synthase; Provisional Back     alignment and domain information
>gnl|CDD|235512 PRK05576, PRK05576, cobalt-precorrin-2 C(20)-methyltransferase; Validated Back     alignment and domain information
>gnl|CDD|233425 TIGR01467, cobI_cbiL, precorrin-2 C20-methyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 384
COG0313275 Predicted methyltransferases [General function pre 100.0
PRK14994287 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O- 100.0
TIGR00096276 probable S-adenosylmethionine-dependent methyltran 100.0
PRK06136249 uroporphyrin-III C-methyltransferase; Reviewed 100.0
PRK15473257 cbiF cobalt-precorrin-4 C(11)-methyltransferase; P 100.0
TIGR01469236 cobA_cysG_Cterm uroporphyrin-III C-methyltransfera 100.0
TIGR01465229 cobM_cbiF precorrin-4 C11-methyltransferase. This 100.0
PRK05765246 precorrin-3B C17-methyltransferase; Provisional 100.0
PLN02625263 uroporphyrin-III C-methyltransferase 100.0
COG2875254 CobM Precorrin-4 methylase [Coenzyme metabolism] 100.0
PRK15478241 cbiH cobalt-precorrin-3B C(17)-methyltransferase; 100.0
COG0007244 CysG Uroporphyrinogen-III methylase [Coenzyme meta 100.0
PF00590210 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Meth 100.0
COG1010249 CobJ Precorrin-3B methylase [Coenzyme metabolism] 100.0
PRK07168 474 bifunctional uroporphyrinogen-III methyltransferas 100.0
TIGR01466239 cobJ_cbiH precorrin-3B C17-methyltransferase. This 100.0
TIGR01467230 cobI_cbiL precorrin-2 C20-methyltransferase. This 100.0
PRK05991250 precorrin-3B C17-methyltransferase; Provisional 100.0
PRK10637457 cysG siroheme synthase; Provisional 100.0
PRK05576229 cobalt-precorrin-2 C(20)-methyltransferase; Valida 100.0
PRK05787210 cobalt-precorrin-6Y C(5)-methyltransferase; Valida 99.97
TIGR00522257 dph5 diphthine synthase. This protein participates 99.97
PRK05948238 precorrin-2 methyltransferase; Provisional 99.97
TIGR02467204 CbiE precorrin-6y C5,15-methyltransferase (decarbo 99.97
PTZ00175270 diphthine synthase; Provisional 99.97
PRK04160258 diphthine synthase; Provisional 99.96
PRK05990241 precorrin-2 C(20)-methyltransferase; Reviewed 99.96
PRK08284253 precorrin 6A synthase; Provisional 99.95
COG2243234 CobF Precorrin-2 methylase [Coenzyme metabolism] 99.95
TIGR02434249 CobF precorrin-6A synthase (deacetylating). This m 99.95
COG2241210 CobL Precorrin-6B methylase 1 [Coenzyme metabolism 99.95
KOG1527506 consensus Uroporphyrin III methyltransferase [Coen 99.94
COG1798260 DPH5 Diphthamide biosynthesis methyltransferase [T 99.89
KOG3123272 consensus Diphthine synthase [Translation, ribosom 99.72
COG3956 488 Protein containing tetrapyrrole methyltransferase 99.21
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 91.34
PF0370151 UPF0181: Uncharacterised protein family (UPF0181); 84.83
TIGR00334174 5S_RNA_mat_M5 ribonuclease M5. This family of orth 83.29
>COG0313 Predicted methyltransferases [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-65  Score=489.84  Aligned_cols=269  Identities=47%  Similarity=0.675  Sum_probs=250.3

Q ss_pred             CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEE
Q 016688           78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA  157 (384)
Q Consensus        78 ~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Va  157 (384)
                      .++|+||+|+|||||++|||+||+++|++||+|+|||||++++||++|+++.+++++|+||+++....+++.+++|++||
T Consensus         2 ~~~g~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~va   81 (275)
T COG0313           2 MMMGTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVA   81 (275)
T ss_pred             CCCceEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEE
Q 016688          158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF  237 (384)
Q Consensus       158 llSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVl  237 (384)
                      +|||||+|+|+|||+.||++|+++||+|+++||+||+++|++.||+|.++|+|.||||.+.++|.+.++.+++...|+||
T Consensus        82 lVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~~~~~t~If  161 (275)
T COG0313          82 LVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKSKERRKRLEALANEPRTLIF  161 (275)
T ss_pred             EEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHHhcCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCcccCCCCChHHHHH
Q 016688          238 YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEK  317 (384)
Q Consensus       238 ye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~~~~~~~~~~~~~~  317 (384)
                      ||+|||+.++|+++.+.+|.+++++|||||||.+|++++|++.++.+++.+...|||+|+||.|+....    .+.....
T Consensus       162 yEsphRl~~tL~d~~~~~g~~r~v~vaRELTK~~Ee~~~g~~~e~~~~~~~~~~KGE~vlvv~~~~~~~----~~~~~~~  237 (275)
T COG0313         162 YESPHRLLATLEDIVEVLGSDREVVVARELTKLFEEIYRGTLSELIEWLEEDTLKGEFVLVVEGKNKAE----AELSLDA  237 (275)
T ss_pred             EecchhHHHHHHHHHHHcCCCceEEEEeecccchhheecccHHHHHHHhhhcCCcccEEEEEeCCcccc----cccchhH
Confidence            999999999999999999989999999999999999999999999999866437999999999976532    1112333


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHH
Q 016688          318 ELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCR  354 (384)
Q Consensus       318 ~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~  354 (384)
                      ....++.+++++|+|++.+|+.+|+    +||.||+.
T Consensus       238 ~~~~~~~~~l~~k~A~~~~a~~~~~----~k~~LY~~  270 (275)
T COG0313         238 EITLLLLQALPLKKAAKLAAKITGL----NKKELYQL  270 (275)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHCc----CHHHHHHH
Confidence            3444555679999999999999999    99999994

>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional Back     alignment and domain information
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family Back     alignment and domain information
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed Back     alignment and domain information
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional Back     alignment and domain information
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase Back     alignment and domain information
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase Back     alignment and domain information
>PRK05765 precorrin-3B C17-methyltransferase; Provisional Back     alignment and domain information
>PLN02625 uroporphyrin-III C-methyltransferase Back     alignment and domain information
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism] Back     alignment and domain information
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional Back     alignment and domain information
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism] Back     alignment and domain information
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family Back     alignment and domain information
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism] Back     alignment and domain information
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed Back     alignment and domain information
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase Back     alignment and domain information
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase Back     alignment and domain information
>PRK05991 precorrin-3B C17-methyltransferase; Provisional Back     alignment and domain information
>PRK10637 cysG siroheme synthase; Provisional Back     alignment and domain information
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated Back     alignment and domain information
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated Back     alignment and domain information
>TIGR00522 dph5 diphthine synthase Back     alignment and domain information
>PRK05948 precorrin-2 methyltransferase; Provisional Back     alignment and domain information
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit Back     alignment and domain information
>PTZ00175 diphthine synthase; Provisional Back     alignment and domain information
>PRK04160 diphthine synthase; Provisional Back     alignment and domain information
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed Back     alignment and domain information
>PRK08284 precorrin 6A synthase; Provisional Back     alignment and domain information
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02434 CobF precorrin-6A synthase (deacetylating) Back     alignment and domain information
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism] Back     alignment and domain information
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only] Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function Back     alignment and domain information
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
3kwp_A296 Crystal Structure Of Putative Methyltransferase Fro 3e-50
3hh1_B117 The Structure Of A Tetrapyrrole Methylase Family Pr 5e-24
3fq6_A115 The Crystal Structure Of A Methyltransferase Domain 5e-21
3ffy_A115 Putative Tetrapyrrole (CorrinPORPHYRIN) METHYLTRANS 5e-20
1wyz_A242 X-Ray Structure Of The Putative Methyltransferase F 2e-11
1ve2_A235 Crystal Structure Of Uroporphyrin-Iii-C-Methyltrans 2e-06
>pdb|3KWP|A Chain A, Crystal Structure Of Putative Methyltransferase From Lactobacillus Brevis Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  196 bits (497), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 139/219 (63%)
Query: 83  LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
           LYLV TPIGNL+D T RA++ L + ++I +EDTR++ KLL ++ I T  +S+H+ N  +R
Sbjct: 18  LYLVPTPIGNLDDXTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQER 77
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
              ++ +LKQG  +A +SDAG P ISDPG EL   C+D  IPVVP+PGA+A + AL ASG
Sbjct: 78  IPQLIAKLKQGXQIAQVSDAGXPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASG 137
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
           LA   F F GFL +  + R   +   A   +T IFY  PH+L + L+  +  FG  R  V
Sbjct: 138 LAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFYEAPHRLKKTLQNLAAGFGDERPAV 197
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG 301
           + RE+TK +EEF RG+L E     ++   +GE  VLV G
Sbjct: 198 LCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGG 236
>pdb|3FQ6|A Chain A, The Crystal Structure Of A Methyltransferase Domain From Bacteroides Thetaiotaomicron Vpi Length = 115 Back     alignment and structure
>pdb|3FFY|A Chain A, Putative Tetrapyrrole (CorrinPORPHYRIN) METHYLTRANSFERASE FROM Bacteroides Fragilis Length = 115 Back     alignment and structure
>pdb|1WYZ|A Chain A, X-Ray Structure Of The Putative Methyltransferase From Bacteroides Thetaiotaomicron Vpi-5482 At The Resolution 2.5 A. Norteast Structural Genomics Consortium Target Btr28 Length = 242 Back     alignment and structure
>pdb|1VE2|A Chain A, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase From Thermus Thermophilus Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
3kwp_A296 Predicted methyltransferase; putative methyltransf 1e-132
1wyz_A242 Putative S-adenosylmethionine-dependent methyltra; 1e-113
3hh1_A117 Tetrapyrrole methylase family protein; chlorobium 2e-69
3ffy_A115 Putative tetrapyrrole (corrin/porphyrin) methylas; 1e-47
1vhv_A268 Diphthine synthase; structural genomics, transfera 1e-34
1wde_A294 Probable diphthine synthase; structural genomics, 2e-23
3i4t_A292 Diphthine synthase; niaid, ssgcid, infectious dise 6e-19
2z6r_A265 Diphthine synthase; methyltransferase, S-adenosyl- 1e-17
2zvb_A295 Precorrin-3 C17-methyltransferase; plasmid, struct 1e-11
3nut_A251 Precorrin-3 methylase; vitamin B12 pathway, cobala 5e-11
1cbf_A285 Cobalt-precorrin-4 transmethylase; precorrin-4 met 1e-08
4e16_A253 Precorrin-4 C(11)-methyltransferase; structural ge 1e-08
3ndc_A264 Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH 3e-08
2e0n_A259 Precorrin-2 C20-methyltransferase; cobalt-factor I 4e-08
2npn_A251 Putative cobalamin synthesis related protein; COBF 8e-07
2qbu_A232 Precorrin-2 methyltransferase; HET: SAH; 2.10A {Me 2e-06
3nd1_A275 Precorrin-6A synthase/COBF protein; methyltransfer 9e-06
1pjq_A457 CYSG, siroheme synthase; rossman fold, nucleotide 2e-04
2bb3_A221 Cobalamin biosynthesis precorrin-6Y methylase (CB; 2e-04
2z67_A456 O-phosphoseryl-tRNA(SEC) selenium transferase; sel 3e-04
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} Length = 296 Back     alignment and structure
 Score =  379 bits (976), Expect = e-132
 Identities = 106/268 (39%), Positives = 157/268 (58%), Gaps = 4/268 (1%)

Query: 67  NLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN 126
             + +Q S +      LYLV TPIGNL+D+T RA++ L + ++I +EDTR++ KLL ++ 
Sbjct: 2   GHMEQQRSFQTETGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFE 61

Query: 127 IKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVV 186
           I T  +S+H+ N  +R   ++ +LKQG  +A +SDAG P ISDPG EL   C+D  IPVV
Sbjct: 62  ITTKQISFHEHNTQERIPQLIAKLKQGMQIAQVSDAGMPSISDPGHELVNACIDAHIPVV 121

Query: 187 PIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQ 246
           P+PGA+A + AL ASGLA   F F GFL +  + R   +   A   +T IFY  PH+L +
Sbjct: 122 PLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFYEAPHRLKK 181

Query: 247 FLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICV 306
            L+  +  FG  R  V+ RE+TK +EEF RG+L E     ++   +GE  VLV G     
Sbjct: 182 TLQNLAAGFGDERPAVLCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGGNPAPT 241

Query: 307 VETPSE----DQLEKELRGLISAGHNLS 330
               +     + ++ ++  LI+AG   +
Sbjct: 242 TAATTAVDLSEPIDVQVDRLIAAGEKPN 269
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1 Length = 242 Back     alignment and structure
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A Length = 115 Back     alignment and structure
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Length = 268 Back     alignment and structure
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1 Length = 294 Back     alignment and structure
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} Length = 292 Back     alignment and structure
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... Length = 265 Back     alignment and structure
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A* Length = 295 Back     alignment and structure
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus} Length = 251 Back     alignment and structure
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A* Length = 285 Back     alignment and structure
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile} Length = 253 Back     alignment and structure
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A Length = 264 Back     alignment and structure
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* Length = 259 Back     alignment and structure
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae} Length = 251 Back     alignment and structure
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 232 Back     alignment and structure
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus} Length = 275 Back     alignment and structure
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Length = 457 Back     alignment and structure
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Length = 221 Back     alignment and structure
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
3kwp_A296 Predicted methyltransferase; putative methyltransf 100.0
1wyz_A242 Putative S-adenosylmethionine-dependent methyltra; 100.0
4e16_A253 Precorrin-4 C(11)-methyltransferase; structural ge 100.0
3ndc_A264 Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH 100.0
1cbf_A285 Cobalt-precorrin-4 transmethylase; precorrin-4 met 100.0
2ybo_A294 Methyltransferase; SUMT, NIRE, heme D1 biosynthesi 100.0
1s4d_A280 Uroporphyrin-III C-methyltransferase; tetrapyrrole 100.0
3nut_A251 Precorrin-3 methylase; vitamin B12 pathway, cobala 100.0
1ve2_A235 Uroporphyrin-III C-methyltransferase; heme, biosyn 100.0
1va0_A239 Uroporphyrin-III C-methyltransferase; structural g 100.0
1pjq_A457 CYSG, siroheme synthase; rossman fold, nucleotide 100.0
2e0n_A259 Precorrin-2 C20-methyltransferase; cobalt-factor I 100.0
2qbu_A232 Precorrin-2 methyltransferase; HET: SAH; 2.10A {Me 100.0
2zvb_A295 Precorrin-3 C17-methyltransferase; plasmid, struct 100.0
3i4t_A292 Diphthine synthase; niaid, ssgcid, infectious dise 100.0
3nd1_A275 Precorrin-6A synthase/COBF protein; methyltransfer 100.0
2z6r_A265 Diphthine synthase; methyltransferase, S-adenosyl- 100.0
1vhv_A268 Diphthine synthase; structural genomics, transfera 100.0
2npn_A251 Putative cobalamin synthesis related protein; COBF 100.0
1wde_A294 Probable diphthine synthase; structural genomics, 100.0
2bb3_A221 Cobalamin biosynthesis precorrin-6Y methylase (CB; 99.97
3hh1_A117 Tetrapyrrole methylase family protein; chlorobium 99.95
3ffy_A115 Putative tetrapyrrole (corrin/porphyrin) methylas; 99.95
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} Back     alignment and structure
Probab=100.00  E-value=1.2e-59  Score=458.78  Aligned_cols=273  Identities=38%  Similarity=0.619  Sum_probs=215.9

Q ss_pred             CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEE
Q 016688           79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL  158 (384)
Q Consensus        79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Val  158 (384)
                      |+|+||+||+|||||+|||+||+++|++||+|+|||+|++.++|++++++++++++|+||+++..+.+++.+++|++||+
T Consensus        14 ~~G~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~~~~~~~~~~~~~li~~l~~G~~Va~   93 (296)
T 3kwp_A           14 TGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQERIPQLIAKLKQGMQIAQ   93 (296)
T ss_dssp             CCCEEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEECSTTTHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCceEEEeccCCCCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeeehhhcchhhHhHHHHHHHhcCceEEE
Confidence            67999999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             EccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEEe
Q 016688          159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFY  238 (384)
Q Consensus       159 lSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVly  238 (384)
                      +||+|||+|||||.++++.+++.|++|+++||+||+++|++++|+|+++|.|+||+|.+..++...|+.+++.+.|+|||
T Consensus        94 lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f~f~g~~p~~~~~r~~~l~~l~~~~~tlV~y  173 (296)
T 3kwp_A           94 VSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFY  173 (296)
T ss_dssp             ECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSEEEEEECCSSHHHHHHHHHTTTTCCSEEEEE
T ss_pred             eccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCceeEEeeccCCcHHHHHHHHHhhcCCceeEee
Confidence            99999999999999999999999999999999999999999999999999999999988767778899999999999999


Q ss_pred             cCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCcccCCCC--Ch--HH
Q 016688          239 VPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETP--SE--DQ  314 (384)
Q Consensus       239 e~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~~~~~~~--~~--~~  314 (384)
                      ++|||+.++++.|.+.++++++++|++++|+++|++++|+++++.++..++.++||+||||.|+........  .+  .+
T Consensus       174 ~~~~rl~~~l~~L~~~~g~~~~v~v~~~lt~~~E~i~~gtl~el~~~~~~~~~~ge~vlvv~~~~~~~~~~~~~~~~~~~  253 (296)
T 3kwp_A          174 EAPHRLKKTLQNLAAGFGDERPAVLCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGGNPAPTTAATTAVDLSEP  253 (296)
T ss_dssp             ECGGGHHHHHHHHHHHHCTTCEEEEEESTTSTTCEEEEEEHHHHHHHHHHSCCCSCEEEEECCCSSCC------------
T ss_pred             eCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHhccHHHHHhhhcccccceeEEEEEcCCCCCCcccchhcccccc
Confidence            999999999999999888889999999999999999999999999998777789999999988654221110  11  23


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHh
Q 016688          315 LEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRI  355 (384)
Q Consensus       315 ~~~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~  355 (384)
                      +.+++..++++|+++|+|+|.+|+.+|+    +||.+|+++
T Consensus       254 ~~~~~~~~~~~~~~~k~a~~~~a~~~g~----~~~~~y~~~  290 (296)
T 3kwp_A          254 IDVQVDRLIAAGEKPNDAIKEVAKLRGA----KKQEIYRQY  290 (296)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHhccc----hHHHHHHHh
Confidence            4456677777799999999999999999    999999964
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1 Back     alignment and structure
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile} Back     alignment and structure
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A Back     alignment and structure
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A* Back     alignment and structure
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A* Back     alignment and structure
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1 Back     alignment and structure
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus} Back     alignment and structure
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1 Back     alignment and structure
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A Back     alignment and structure
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Back     alignment and structure
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* Back     alignment and structure
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A* Back     alignment and structure
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} Back     alignment and structure
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus} Back     alignment and structure
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... Back     alignment and structure
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Back     alignment and structure
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae} Back     alignment and structure
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1 Back     alignment and structure
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Back     alignment and structure
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 384
d1wdea_289 c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum 2e-42
d1wyza1233 c.90.1.1 (A:2-234) Putative methytransferase BT419 4e-41
d1cbfa_239 c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase 6e-36
d1vhva_251 c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon A 2e-35
d2deka1265 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyroc 2e-34
d1s4da_265 c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase 1e-31
d1ve2a1235 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransf 2e-31
d1va0a1225 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 { 1e-29
d1pjqa2242 c.90.1.1 (A:216-457) Siroheme synthase CysG, domai 5e-29
d2bb3a1195 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE {Ar 2e-19
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 56636]} Length = 289 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tetrapyrrole methylase
superfamily: Tetrapyrrole methylase
family: Tetrapyrrole methylase
domain: Diphthine synthase, DphB
species: Aeropyrum pernix [TaxId: 56636]

 Score =  147 bits (372), Expect = 2e-42
 Identities = 42/246 (17%), Positives = 76/246 (30%), Gaps = 36/246 (14%)

Query: 83  LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQY-----YNIKTPLLSYHKF 137
           L LV          TL AL  ++ A+V+  E     G    Y        +  ++   + 
Sbjct: 5   LLLVGWGYAP-GMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRR 63

Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
           +  +R + +++R     +  +   AG P ++   + LA   ++  + V  IPG S   AA
Sbjct: 64  DLEERSREIVSRALDAVVAVVT--AGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAA 121

Query: 198 LSASGLATDEFTFVGFLPKHARSRT------ERLMLSANEVKTQIFY---------VPPH 242
             A+ L+   F     LP   R  T         +     + T              P  
Sbjct: 122 RGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQ 181

Query: 243 KLLQFLE---------ETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKG 293
            +   LE             L       ++       H   +  +L            +G
Sbjct: 182 GVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLST----ADVEG 237

Query: 294 EITVLV 299
            +  +V
Sbjct: 238 GVYSIV 243
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 233 Back     information, alignment and structure
>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]} Length = 239 Back     information, alignment and structure
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 251 Back     information, alignment and structure
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]} Length = 265 Back     information, alignment and structure
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]} Length = 265 Back     information, alignment and structure
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]} Length = 235 Back     information, alignment and structure
>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus thermophilus [TaxId: 274]} Length = 225 Back     information, alignment and structure
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]} Length = 242 Back     information, alignment and structure
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE {Archaeoglobus fulgidus [TaxId: 2234]} Length = 195 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
d1wyza1233 Putative methytransferase BT4190 {Bacteroides thet 100.0
d1s4da_265 Uroporphyrin-III C-methyltransferase (SUMT, UROM, 100.0
d1cbfa_239 Cobalt precorrin-4 methyltransferase CbiF {Bacillu 100.0
d1wdea_289 Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 100.0
d1ve2a1235 Uroporphyrin-III C-methyltransferase (SUMT, UROM, 100.0
d1vhva_251 Diphthine synthase, DphB {Archaeon Archaeoglobus f 100.0
d1pjqa2242 Siroheme synthase CysG, domains 4 and 5 {Salmonell 100.0
d2deka1265 Diphthine synthase, DphB {Pyrococcus horikoshii [T 99.97
d2bb3a1195 Precorrin-6y methylase CbiE {Archaeoglobus fulgidu 99.97
d1va0a1225 Hypothetical protein TTHA0667 {Thermus thermophilu 99.96
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 86.1
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tetrapyrrole methylase
superfamily: Tetrapyrrole methylase
family: Tetrapyrrole methylase
domain: Putative methytransferase BT4190
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=100.00  E-value=4.4e-48  Score=361.81  Aligned_cols=218  Identities=23%  Similarity=0.384  Sum_probs=190.4

Q ss_pred             CeEEEEecCCCCc---cchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCc-----EEecCCcchhhHHHHHHHHHhC
Q 016688           81 PGLYLVATPIGNL---EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-----LLSYHKFNESQREQTVLNRLKQ  152 (384)
Q Consensus        81 g~LyiVGtGpGnp---~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~-----lis~~~~ne~~~~~~Ii~~l~~  152 (384)
                      +.||+|||||||+   +|||+||+++|++||+|+|||||+++++|++++++.+     ...+|++++++..+.+++.+.+
T Consensus         2 ~~Lylv~tpiGnl~~~~~it~ra~~~l~~~d~i~~Edtr~~~~lL~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~   81 (233)
T d1wyza1           2 TALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAG   81 (233)
T ss_dssp             CSEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCCchhhhcCHHHHHHHHhCCEEEEEeCHHHHHHHHHcCCccccchhhhhhhhhhhhHHHhHHHHHHHhc
Confidence            5799999999996   7999999999999999999999999999999987654     5688999999999999999999


Q ss_pred             CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHh----h
Q 016688          153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLML----S  228 (384)
Q Consensus       153 Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~----l  228 (384)
                      |++|+++||+|||+|+|||++++++|+++|++|+++||+||+++|++.+|+|.++|.|.||+|...+.+...+..    .
T Consensus        82 g~~v~lvsDaG~P~IsDPG~~lV~~~~~~gi~v~iiPG~SA~~aA~s~sG~~~~~~~f~gfl~~~~~~~~~~~~~l~~~~  161 (233)
T d1wyza1          82 GASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRV  161 (233)
T ss_dssp             TCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSEEEEEECCSSTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEeccccccccchhhhhhhhhhcccccccccccCcchheeeeeccccccccccceeeeeecCcccchhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999887766554433    3


Q ss_pred             hcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEE
Q 016688          229 ANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLV  299 (384)
Q Consensus       229 ~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII  299 (384)
                      .....|+|+|++|||+.++++.|.+.++++++++|++++|+++|++++|+++++.+...+. .|+++++||
T Consensus       162 ~~~~~t~v~~e~~~r~~~~l~~l~~~~~~~t~v~I~~elTk~~E~i~~gtl~~i~~~~~~~-~k~p~viii  231 (233)
T d1wyza1         162 YAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPEL-SKIPCIFLL  231 (233)
T ss_dssp             HHHTCEEEEEECGGGHHHHHHHHHHHSCSSSEEEEEESTTSSSCEEEEEEHHHHSSCCC----CCCEEEEE
T ss_pred             hccCceeEEEecchhHHHHHHHHHHhcCCCCEEEEEEeCCccceEEEEeEHHHHHHhhhhc-CCCCEEEEE
Confidence            5567899999999999999999999998899999999999999999999999998765433 378976665
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]} Back     information, alignment and structure
>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure