Citrus Sinensis ID: 016692

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINHHHHHHQHPHSHSPVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKGTGVSAVMSSGAGCGGGYNNNNNNINLNTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPSNSYPPSLLLCNTTPSAAAAAPMCANTTPLVQKPLNQLLGYYPTNGTNPKQATHHQAHVLNSPTATSQSSLTILEEPNSNSCKTKLFGVPLQSKKRVHPEYASNYPANTETNKARLVMDKDDLGLNLMPPSTC
cccccccccccccccccccccccHHHHHHHHHHccccccccEEEccccccEEEEccccHHHHHHHccccccccHHHHHHHHcccccccccccEEEEccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccc
ccccccccccccccccccccccccHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccEEEEEEccccccccccccccccccccccccEEEEEcccccccccccccc
MALMLDNCEGILLSldshksvpapfltktyqlvddpttdhvvswgeddttfvvwrppefardllpnyfkhnnfSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRrktaqpqvainhhhhhhqhphshspvlvngpsffpfpnrvsispsdsdehvnnwcdspprggkgtgVSAVMssgagcgggynnnnnninLNTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQnhvkpvtpsnsyppslllcnttpsaaaaapmcanttplvqkplnqllgyyptngtnpkqathhqahvlnsptatsqssltileepnsnscktklfgvplqskkrvhpeyasnypantetnkarlvmdkddlglnlmppstc
MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINHHHHHHQHPHSHSPVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKGTGVSAVMSSGAGCGGGYNNNNNNINLNTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPSNSYPPSLLLCNTTPSAAAAAPMCANTTPLVQKPLNQLLGYYPTNGTNPKQATHHQAHVLNSPTATSQSSLTILeepnsnsckTKLFGvplqskkrvhpeyasnypantetnkarLVMDKDdlglnlmppstc
MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINhhhhhhqhphshspVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKgtgvsavmssgagcgggynnnnnninlntsvtaLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPSNSYPPSLLLCNttpsaaaaapmcanttpLVQKPLNQLLGYYPTNGTNPKQATHHQAHVLNSPTATSQSSLTILEEPNSNSCKTKLFGVPLQSKKRVHPEYASNYPANTETNKARLVMDKDDLGLNLMPPSTC
****LDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIH******************************************************************************************************************ELAHMRKLYNDIIYFVQNHVKPVTPSNSYPPSLLLCNTTPSAAAAAPMCANTTPLVQKPLNQLLGYYP******************************************************************************************
*************************LTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCE*****************************************************************************************************************************************************************************************************************************************************************VMDKDDLGLNLM*****
MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAI**************PVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKGTGVSAVMSSGAGCGGGYNNNNNNINLNTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPSNSYPPSLLLCNTTPSAAAAAPMCANTTPLVQKPLNQLLGYYPTNGTNPKQATHHQAHVLNSPTATSQSSLTILEEPNSNSCKTKLFGVPLQSKKRVHPEYASNYPANTETNKARLVMDKDDLGLNLMPPSTC
********************VPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHR******************************P**********************************************************LNTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPSNSYPPSLLLCNT*****************************************************************SNSCKTKLFGVPLQS******************NKARLVMDKDDLGLNLMPPSTC
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MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINHHHHHHQHPHSHSPVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKGTGVSAVMSSGAGCGGGYNNNNNNINLNTSxxxxxxxxxxxxxxxxxxxxxLAHMRKLYNDIIYFVQNHVKPVTPSNSYPPSLLLCNTTPSAAAAAPMCANTTPLVQKPLNQLLGYYPTNGTNPKQATHHQAHVLNSPTATSQSSLTILEEPNSNSCKTKLFGVPLQSKKRVHPEYASNYPANTETNKARLVMDKDDLGLNLMPPSTC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query384 2.2.26 [Sep-21-2011]
Q9C635348 Heat stress transcription yes no 0.846 0.933 0.538 1e-94
Q7XHZ0310 Heat stress transcription yes no 0.557 0.690 0.529 6e-65
Q10KX8305 Heat stress transcription no no 0.570 0.718 0.525 9e-62
Q67U94394 Heat stress transcription no no 0.841 0.819 0.422 1e-60
Q652B0454 Heat stress transcription no no 0.567 0.480 0.441 1e-49
Q6Z9R8380 Putative heat stress tran no no 0.242 0.244 0.826 7e-46
Q6Z9C8390 Heat stress transcription no no 0.255 0.251 0.795 1e-45
Q9T0D3377 Heat stress transcription no no 0.270 0.275 0.75 4e-45
Q9SCW4299 Heat stress transcription no no 0.531 0.682 0.418 3e-44
P22335301 Heat shock factor protein N/A no 0.497 0.634 0.428 9e-43
>sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1 Back     alignment and function desciption
 Score =  347 bits (889), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 218/405 (53%), Positives = 244/405 (60%), Gaps = 80/405 (19%)

Query: 1   MALMLDNC---------EGILLSLDSH-KSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTT 50
           MA+M++N          E I L ++   K+VPAPFLTKTYQLVDDP TDHVVSWG+DDTT
Sbjct: 1   MAMMVENSYGGYGGGGGERIQLMVEGQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTT 60

Query: 51  FVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCE 110
           FVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFK+GEKHLLCE
Sbjct: 61  FVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCE 120

Query: 111 IHRRKTAQ--PQVAINHHHHHHQHPHSHSPVLVNGPSFFPFPNRVSISPSDSDEHVNNWC 168
           IHRRKT+Q  PQ       HHH  P     +  +G SFFP P     +P    E  + WC
Sbjct: 121 IHRRKTSQMIPQQHSPFMSHHHAPPQ----IPFSGGSFFPLPPPRVTTP----EEDHYWC 172

Query: 169 -DSPPRGGKGTGVSAVMSSGAGCGGGYNNNNNNINLNTSVTALSEDNERLRRSNNMLMSE 227
            DSPP   +                        I+    VTALSEDNERLRRSN +LMSE
Sbjct: 173 DDSPPSRPRVIP-------------------QQIDTAAQVTALSEDNERLRRSNTVLMSE 213

Query: 228 LAHMRKLYNDIIYFVQNHVKPVTPSN--SYPPSLLLCNTTPSAAAAAPMCANTTPLVQKP 285
           LAHM+KLYNDIIYFVQNHVKPV PSN  SY  S L                         
Sbjct: 214 LAHMKKLYNDIIYFVQNHVKPVAPSNNSSYLSSFLQKQQQQQPPT--------------- 258

Query: 286 LNQLLGYYPTNGTNPKQATHHQAHVLNSPTATSQSSLTILEE------PNSNSCKTKLFG 339
               L YY T   N   AT+  A  LNS   TSQSS+T+LE+        SN  KTKLFG
Sbjct: 259 ----LDYYNTATVN---ATNLNA--LNSSPPTSQSSITVLEDDHTNHHDQSNMRKTKLFG 309

Query: 340 VPL-QSKKRVHPEYASNYPANTETNKARLVMDKDDLGLNLMPPST 383
           V L  SKKR H         + +T+K RLV+D+ DL LNLM  ST
Sbjct: 310 VSLPSSKKRSH-------HFSDQTSKTRLVLDQSDLALNLMTAST 347
Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XHZ0|HFB4B_ORYSJ Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1 Back     alignment and function description
>sp|Q10KX8|HFB4D_ORYSJ Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1 Back     alignment and function description
>sp|Q67U94|HFB4C_ORYSJ Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1 Back     alignment and function description
>sp|Q652B0|HFB2C_ORYSJ Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1 Back     alignment and function description
>sp|Q6Z9R8|HFB4A_ORYSJ Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1 Back     alignment and function description
>sp|Q6Z9C8|HFB2B_ORYSJ Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1 Back     alignment and function description
>sp|Q9T0D3|HFB2B_ARATH Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1 Back     alignment and function description
>sp|Q9SCW4|HFB2A_ARATH Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1 Back     alignment and function description
>sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
118488115368 unknown [Populus trichocarpa] 0.953 0.994 0.787 1e-155
255538270362 DNA binding protein, putative [Ricinus c 0.932 0.988 0.755 1e-152
357465547373 Heat stress transcription factor B-4 [Me 0.924 0.951 0.691 1e-145
225458643363 PREDICTED: heat stress transcription fac 0.927 0.980 0.734 1e-143
356510438363 PREDICTED: heat stress transcription fac 0.924 0.977 0.724 1e-143
224137554346 predicted protein [Populus trichocarpa] 0.898 0.997 0.748 1e-142
356519266363 PREDICTED: heat stress transcription fac 0.927 0.980 0.726 1e-142
671868370 heat shock transcription factor 5 [Glyci 0.906 0.940 0.652 1e-130
359807116370 uncharacterized protein LOC100782841 [Gl 0.906 0.940 0.650 1e-129
449450526374 PREDICTED: heat stress transcription fac 0.932 0.957 0.645 1e-129
>gi|118488115|gb|ABK95877.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 304/386 (78%), Positives = 319/386 (82%), Gaps = 20/386 (5%)

Query: 1   MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFA 60
           MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDP TDH+VSWGEDDTTFVVWRPPEFA
Sbjct: 1   MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFA 60

Query: 61  RDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQ 120
           RDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQ
Sbjct: 61  RDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQ 120

Query: 121 VAINHHHHHHQHPHSHSPVLVNGPSFFPFPNRVSISPSDSDEHV-NNWCDSPPRGGKGTG 179
           VAIN HHHH    H HSP  VNGPSFFPF +R SISPSDSDE   NNWCDSPP      G
Sbjct: 121 VAINQHHHHQH--HPHSPFGVNGPSFFPFSSRTSISPSDSDEQANNNWCDSPPLTSPPRG 178

Query: 180 VSAVMSSGAGCGGGYNNNNNNINLNTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDII 239
           V++  ++  G GGGY         N+SV ALSEDNERLRRSNNMLMSELAHM+KLYNDII
Sbjct: 179 VAS--ATVIGGGGGY---------NSSVFALSEDNERLRRSNNMLMSELAHMKKLYNDII 227

Query: 240 YFVQNHVKPVTPSNSYPPSLLLCNTTPSAAAAAPMCANTTPLVQKPLNQLLGYYPTNG-T 298
           YFVQNHVKPV PSNSY  SLLLC   P  A A P+ +N + L QKPLNQLLGYYPT    
Sbjct: 228 YFVQNHVKPVAPSNSYSSSLLLCGPAP-YATANPVTSNGS-LAQKPLNQLLGYYPTTAPN 285

Query: 299 NPKQATHHQAHVLNSPTATSQSSLTILEEPNSNSCKTKLFGVPLQSKKRVHPEYASNYPA 358
           NPKQA   Q HVLNSPT TSQSSLT LEE N+N CKTKLFGVPL SKKR+HPEY SN P 
Sbjct: 286 NPKQAP--QVHVLNSPTTTSQSSLTFLEEANNNGCKTKLFGVPLHSKKRLHPEYGSN-PG 342

Query: 359 NTETNKARLVMDKDDLGLNLMPPSTC 384
           N ETNKAR+V+DKDDLGLNLMPPS C
Sbjct: 343 NMETNKARMVLDKDDLGLNLMPPSRC 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538270|ref|XP_002510200.1| DNA binding protein, putative [Ricinus communis] gi|223550901|gb|EEF52387.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357465547|ref|XP_003603058.1| Heat stress transcription factor B-4 [Medicago truncatula] gi|355492106|gb|AES73309.1| Heat stress transcription factor B-4 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225458643|ref|XP_002284836.1| PREDICTED: heat stress transcription factor B-4 [Vitis vinifera] gi|147768919|emb|CAN66983.1| hypothetical protein VITISV_004457 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510438|ref|XP_003523945.1| PREDICTED: heat stress transcription factor B-4-like [Glycine max] gi|83853818|gb|ABC47851.1| heat shock transcription factor [Glycine max] Back     alignment and taxonomy information
>gi|224137554|ref|XP_002327155.1| predicted protein [Populus trichocarpa] gi|222835470|gb|EEE73905.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356519266|ref|XP_003528294.1| PREDICTED: heat stress transcription factor B-4-like [Glycine max] gi|83853831|gb|ABC47863.1| Heat shock transcription factor (HSF) [Glycine max] Back     alignment and taxonomy information
>gi|671868|emb|CAA87080.1| heat shock transcription factor 5 [Glycine max] Back     alignment and taxonomy information
>gi|359807116|ref|NP_001241604.1| uncharacterized protein LOC100782841 [Glycine max] gi|255634694|gb|ACU17709.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449450526|ref|XP_004143013.1| PREDICTED: heat stress transcription factor B-4-like [Cucumis sativus] gi|449518787|ref|XP_004166417.1| PREDICTED: heat stress transcription factor B-4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
TAIR|locus:2825726348 HSFB4 "AT1G46264" [Arabidopsis 0.411 0.454 0.674 1.8e-76
TAIR|locus:2115015284 HSF4 "AT4G36990" [Arabidopsis 0.260 0.352 0.7 1e-47
TAIR|locus:2139792377 AT-HSFB2B [Arabidopsis thalian 0.554 0.564 0.445 1.6e-45
TAIR|locus:2174043299 HSFB2A "AT5G62020" [Arabidopsi 0.278 0.357 0.648 7.6e-44
TAIR|locus:2005495495 HSF1 "AT4G17750" [Arabidopsis 0.257 0.2 0.696 3.2e-41
TAIR|locus:2028326485 HSFA1D "AT1G32330" [Arabidopsi 0.263 0.208 0.683 1.1e-40
TAIR|locus:2117139401 HSF A4A "AT4G18880" [Arabidops 0.255 0.244 0.636 6.5e-40
TAIR|locus:2075447468 HSFA1E "AT3G02990" [Arabidopsi 0.291 0.239 0.620 9.4e-40
TAIR|locus:2149050481 HSF3 "AT5G16820" [Arabidopsis 0.260 0.207 0.673 1.2e-37
TAIR|locus:2094339406 HSFA6B "AT3G22830" [Arabidopsi 0.260 0.246 0.67 1.9e-37
TAIR|locus:2825726 HSFB4 "AT1G46264" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 567 (204.7 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
 Identities = 112/166 (67%), Positives = 124/166 (74%)

Query:     9 EGILLSLDSH-KSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNY 67
             E I L ++   K+VPAPFLTKTYQLVDDP TDHVVSWG+DDTTFVVWRPPEFARDLLPNY
Sbjct:    18 ERIQLMVEGQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNY 77

Query:    68 FKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXX 127
             FKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFK+GEKHLLCEIHRRKT+Q  +      
Sbjct:    78 FKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQ--MIPQQHS 135

Query:   128 XXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWCD-SPP 172
                        +  +G SFFP P     +P +  +H   WCD SPP
Sbjct:   136 PFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEE--DHY--WCDDSPP 177
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0008356 "asymmetric cell division" evidence=IMP
GO:0009408 "response to heat" evidence=RCA
TAIR|locus:2115015 HSF4 "AT4G36990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139792 AT-HSFB2B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174043 HSFB2A "AT5G62020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C635HSFB4_ARATHNo assigned EC number0.53820.84630.9339yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
pfam0044796 pfam00447, HSF_DNA-bind, HSF-type DNA-binding 6e-52
smart00415105 smart00415, HSF, heat shock factor 9e-50
COG5169282 COG5169, HSF1, Heat shock transcription factor [Tr 3e-25
>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding Back     alignment and domain information 
 Score =  168 bits (427), Expect = 6e-52
 Identities = 55/95 (57%), Positives = 73/95 (76%), Gaps = 2/95 (2%)

Query: 24  PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 83
           PFL K Y++++DP+ D ++SW ED  +F++W P EFA+ +LP YFKHNNFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 84  GFRKIVPDR--WEFANEFFKKGEKHLLCEIHRRKT 116
           GF K+  DR  WEFA+  FK+G+K LL +I RRK+
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKS 95

Length = 96
>gnl|CDD|214654 smart00415, HSF, heat shock factor Back     alignment and domain information
>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 384
KOG0627304 consensus Heat shock transcription factor [Transcr 100.0
PF00447103 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0 100.0
smart00415105 HSF heat shock factor. 100.0
COG5169282 HSF1 Heat shock transcription factor [Transcriptio 99.96
PF0017885 Ets: Ets-domain; InterPro: IPR000418 Transcription 95.36
smart0041387 ETS erythroblast transformation specific domain. v 93.65
PF07407 420 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: 92.43
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 89.57
PRK13169110 DNA replication intiation control protein YabA; Re 88.58
KOG3806177 consensus Predicted transcription factor [Transcri 88.18
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 88.1
smart0033865 BRLZ basic region leucin zipper. 87.54
PRK13922276 rod shape-determining protein MreC; Provisional 87.26
PRK14872 337 rod shape-determining protein MreC; Provisional 87.17
KOG4196135 consensus bZIP transcription factor MafK [Transcri 86.53
PF0234432 Myc-LZ: Myc leucine zipper domain; InterPro: IPR00 85.29
KOG3119269 consensus Basic region leucine zipper transcriptio 85.09
PF0733476 IFP_35_N: Interferon-induced 35 kDa protein (IFP 3 84.53
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 83.66
PF08961243 DUF1875: Domain of unknown function (DUF1875); Int 81.98
PF08172248 CASP_C: CASP C terminal; InterPro: IPR012955 This 81.56
TIGR00219283 mreC rod shape-determining protein MreC. MreC (mur 80.89
>KOG0627 consensus Heat shock transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-36  Score=292.56  Aligned_cols=106  Identities=58%  Similarity=1.033  Sum_probs=99.8

Q ss_pred             cCCCCCCchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeee--CCce
Q 016692           16 DSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIV--PDRW   93 (384)
Q Consensus        16 ~s~k~vP~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~--~d~~   93 (384)
                      ....+.+.+|+.|||+||+||.+++||+|+++|++|||||+.+|.+.+||+||||+||+|||||||+|||+|+.  +++|
T Consensus         6 ~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~w   85 (304)
T KOG0627|consen    6 LSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRW   85 (304)
T ss_pred             ccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCce
Confidence            34455778999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             eEecCCcCCCChhhhccccccCCCCCCc
Q 016692           94 EFANEFFKKGEKHLLCEIHRRKTAQPQV  121 (384)
Q Consensus        94 eF~He~FrRG~p~LL~~IkRRK~~~~~~  121 (384)
                      ||+|++|+||+++||++|+|||......
T Consensus        86 EF~n~~F~rg~~~LL~~I~rrk~~~~~~  113 (304)
T KOG0627|consen   86 EFSNPCFVRGQKLLLKNIKRRKSASRIF  113 (304)
T ss_pred             eecChhHhcChHHHHHHHhhhccccCCc
Confidence            9999999999999999999999876544

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs [] Back     alignment and domain information
>smart00415 HSF heat shock factor Back     alignment and domain information
>COG5169 HSF1 Heat shock transcription factor [Transcription] Back     alignment and domain information
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription [] Back     alignment and domain information
>smart00413 ETS erythroblast transformation specific domain Back     alignment and domain information
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>KOG3806 consensus Predicted transcription factor [Transcription] Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>PRK13922 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>PRK14872 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>KOG4196 consensus bZIP transcription factor MafK [Transcription] Back     alignment and domain information
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes Back     alignment and domain information
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription] Back     alignment and domain information
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration [] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function Back     alignment and domain information
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins Back     alignment and domain information
>TIGR00219 mreC rod shape-determining protein MreC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
2ldu_A125 Solution Nmr Structure Of Heat Shock Factor Protein 1e-18
1hks_A106 Solution Structure Of The Dna-Binding Domain Of Dro 2e-17
3hts_B102 Heat Shock Transcription FactorDNA COMPLEX Length = 7e-12
1fym_A92 Serendipitous Crystal Structure Containing The Heat 1e-11
1fbu_A90 Heat Shock Transcription Factor Dna Binding Domain 1e-11
1fyk_A92 Serendipitous Crystal Structure Containing The Heat 5e-11
1fbs_A90 Heat Shock Transcription Factor Dna Binding Domain 6e-11
1fbq_A90 Heat Shock Transcription Factor Dna Binding Domain 7e-11
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125 Back     alignment and structure 
Iteration: 1

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 12/108 (11%)
Query: 21  VPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQL 80
           VPA FLTK + LV DP TD ++ W     +F V+   +FA+++LP YFKHNN +SFVRQL
Sbjct: 17  VPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQL 75
Query: 81  NTYGFRKIV---------PDR--WEFANEFFKKGEKHLLCEIHRRKTA 117
           N YGFRK+V         P+R   EF +  F +G++ LL  I R+ T+
Sbjct: 76  NMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106 Back     alignment and structure
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102 Back     alignment and structure
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92 Back     alignment and structure
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90 Back     alignment and structure
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92 Back     alignment and structure
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90 Back     alignment and structure
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
1hks_A106 Heat-shock transcription factor; transcription reg 3e-51
2ldu_A125 Heat shock factor protein 1; structural genomics, 1e-48
3hts_B102 Heat shock transcription factor; transcription reg 2e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106 Back     alignment and structure
 Score =  165 bits (421), Expect = 3e-51
 Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 10/105 (9%)

Query: 20  SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQ 79
           S    FL K ++LVDD  T+ ++ W +D  +FV+    +FA++LLP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 80  LNTYGFRKIV----------PDRWEFANEFFKKGEKHLLCEIHRR 114
           LN YGF KI            D  EF++ FFK+    LL +I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
1hks_A106 Heat-shock transcription factor; transcription reg 100.0
2ldu_A125 Heat shock factor protein 1; structural genomics, 100.0
3hts_B102 Heat shock transcription factor; transcription reg 99.96
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 91.6
1awc_A110 Protein (GA binding protein alpha); complex (trans 90.84
1fli_A98 FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: 90.63
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 90.16
4avp_A106 ETS translocation variant 1; transcription, transc 90.13
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 89.95
2ypr_A102 Protein FEV; transcription; 2.64A {Homo sapiens} P 89.92
3w03_C184 DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS 89.59
1bc8_C93 SAP-1, protein (SAP-1 ETS domain); DNA-binding dom 89.22
1wwx_A107 E74-like factor 5 ESE-2B; DNA binding, transcripti 89.13
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 88.9
1gvj_A146 C-ETS-1 protein, P54; transcription, autoinhibitio 87.84
2dao_A118 Transcription factor ETV6; ETS domain, structural 86.34
2nny_A171 C-ETS-1 protein, P54; protein-DNA complex, transcr 86.2
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 84.48
1yo5_C97 SAM pointed domain containing ETS transcription fa 84.0
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 83.07
1deb_A54 APC protein, adenomatous polyposis coli protein; c 83.06
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 82.92
2j5u_A255 MREC protein; bacterial cell shape determining pro 82.81
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 82.71
1hbx_G157 ETS-domain protein ELK-4; gene regulation, transcr 82.47
3jtg_A103 ETS-related transcription factor ELF-3; ELF3, prot 81.56
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 81.26
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 80.02
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Back     alignment and structure
Probab=100.00  E-value=4.4e-38  Score=263.75  Aligned_cols=92  Identities=46%  Similarity=0.871  Sum_probs=88.4

Q ss_pred             chHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeee----------CCc
Q 016692           23 APFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIV----------PDR   92 (384)
Q Consensus        23 ~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~----------~d~   92 (384)
                      .+|+.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||+|+||+||+||||+|||+|+.          ++.
T Consensus         5 p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~   84 (106)
T 1hks_A            5 PAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDE   84 (106)
T ss_dssp             CTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTST
T ss_pred             CcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCc
Confidence            3699999999999999999999999999999999999999999999999999999999999999985          367


Q ss_pred             eeEecCCcCCCChhhhcccccc
Q 016692           93 WEFANEFFKKGEKHLLCEIHRR  114 (384)
Q Consensus        93 ~eF~He~FrRG~p~LL~~IkRR  114 (384)
                      |+|+|++|+||+++||..|+||
T Consensus        85 ~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           85 IEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TEECCTTCCSSCTTSTTTCCCC
T ss_pred             eEEECcCccCcCHHHHhhCcCC
Confidence            9999999999999999999986
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A Back     alignment and structure
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens} Back     alignment and structure
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C* Back     alignment and structure
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A* Back     alignment and structure
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1 Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes} Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 384
d1hksa_106 a.4.5.22 (A:) Heat-shock transcription factor {Dro 1e-38
d2htsa_92 a.4.5.22 (A:) Heat-shock transcription factor {Mil 1e-32
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  131 bits (332), Expect = 1e-38
 Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 10/105 (9%)

Query: 20  SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQ 79
           S    FL K ++LVDD  T+ ++ W +D  +FV+    +FA++LLP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 80  LNTYGFRKIV----------PDRWEFANEFFKKGEKHLLCEIHRR 114
           LN YGF KI            D  EF++ FFK+    LL +I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
d1hksa_106 Heat-shock transcription factor {Drosophila melano 100.0
d2htsa_92 Heat-shock transcription factor {Milk yeast (Kluyv 99.95
d1pp7u_114 39 kda initiator binding protein, IBP39, N-termina 93.03
d1flia_98 Fli-1 {Human (Homo sapiens) [TaxId: 9606]} 92.64
d1awca_110 GA binding protein (GABP) alpha {Mouse (Mus muscul 92.58
d1duxc_86 Elk-1 {Human (Homo sapiens) [TaxId: 9606]} 90.65
d1gvja_142 ETS-1 transcription factor, residues 331-440 {Huma 90.34
d1hbxg_155 Serum response factor accessory protein 1a, SAP-1 89.1
d1puee_88 Transcription factor PU.1, residues 171-259 {Mouse 84.79
d1wwxa194 E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta 81.72
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=1.5e-35  Score=245.95  Aligned_cols=94  Identities=47%  Similarity=0.896  Sum_probs=88.5

Q ss_pred             CCCchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeeeC---------
Q 016692           20 SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVP---------   90 (384)
Q Consensus        20 ~vP~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~~---------   90 (384)
                      +|| +|+.|||+||+|+++++||+|++||++|||+|+.+|+++|||+||+|++|+||+||||+|||+|+..         
T Consensus         3 ~vp-~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           3 GVP-AFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TCC-TTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCC-cHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            566 5999999999999999999999999999999999999999999999999999999999999999853         


Q ss_pred             -CceeEecCCcCCCChhhhcccccc
Q 016692           91 -DRWEFANEFFKKGEKHLLCEIHRR  114 (384)
Q Consensus        91 -d~~eF~He~FrRG~p~LL~~IkRR  114 (384)
                       +.++|+|++|+||+++||..|+||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence             468899999999999999999876
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]} Back     information, alignment and structure
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure