Citrus Sinensis ID: 016694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKEKIEPTLQVQ
Secondary Structure (PSIPRED)
cEEcccccEEEEEccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEEcccccEEcccccccccccccccccccccEEEEEccccccEEccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccEEEccccccccccccccccccEEEcccccccccccccccccccccccEEEEccccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHcEEEHcccccHHHHHcccccccccccccEEEEEcccccHHHcccHHHHHHHHHHcEEEEcccccHHEEEEcccccccccccEEEcccccEEEEcccccccHcccccccccEcccccEEEEEccccccEcccHHHHHHHHHHcccEEcccccEEEEcccccccccccccccccEEEEEcccHcHHHHcccccccccccccHcEEEccccHHHHHcccccccccccEEEEEEcccccHEEccHHHHHHHHHHcEEEEcccHHHHEEEccccccccccEEEcccccEEEEcccccccHccccccccccccccEEEEEcccccEEEccccccccccEEEEEccccccccHHHHcccHHHHHHHHHHHcccccccccEEEEc
Coil and Loop (DISEMBL)
migfrdikylqlghfprlqeiwhgqalpvsffnnlrHLVVDDCTNMLSAIPANLIRCLNnlrwlevrncdsleevlhleelnadkehigplfpklfeltlmdlpklkrFCNFTENIIEMpelrylaiencpdmetfISNSVVhvttdnkepekltseenffltdqiqplfdekvafpqLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSklqklvtpswhlenlatlevskCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEelgylgldclpsltsfclgnyalefpslehvvvrqcptmkifsqgvvdapklnkvkpteeedgddegcwegnLNDTIKKLFNEMNskekieptlqvq
Flexible Loop (DISEMBL)
MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLtlstseslvnlGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKifsqgvvdapklnkvkpteeedgddegcwegNLNDTIKKLFnemnskekieptlqvq
Low Complexity Region (SEG)
MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTeeedgddegcwegNLNDTIKKLFNEMNSKEKIEPTLQVQ
Disordered region (IsUnstruct)
**GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTT***********ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA******************CWEGNLN**I********************
Disordered Region (DISOPRED)
MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII**********CVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG*VDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNS*EKIEPTLQV*
Disordered Region (DISEMBL)
MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNK***********EGCWEGNLNDTIKKLFNEMNSKE*********
Disordered Region (DISPRO)
MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKEKIEPTLQVQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKEKIEPTLQVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.890	0.255	0.384	5e-48
224083436	758	predicted protein [Populus trichocarpa]	0.934	0.473	0.303	2e-41
147787802	1517	hypothetical protein VITISV_005047 [Viti	0.934	0.236	0.304	2e-37
302143647	759	unnamed protein product [Vitis vinifera]	0.955	0.483	0.282	3e-37
358344895	906	Resistance protein RGC2, partial [Medica	0.906	0.384	0.325	5e-37
357439633	1039	Rpp4 candidate [Medicago truncatula] gi|	0.921	0.340	0.284	3e-35
147826471	1271	hypothetical protein VITISV_031250 [Viti	0.929	0.280	0.284	2e-34
255574526	1232	Disease resistance protein RFL1, putativ	0.752	0.234	0.296	5e-34
255581680	1126	Disease resistance protein RPS2, putativ	0.898	0.306	0.304	5e-33
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.486	0.076	0.405	3e-32

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 207/369 (56%), Gaps = 27/369 (7%)

Query: 20   EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE 79
            E+W+GQ L +SF  NLR L++ +C ++L   P++L + L NL  L+V NC+ LEE+  LE
Sbjct: 920  EVWNGQ-LSLSF-GNLRSLMMQNCMSLLKVFPSSLFQSLQNLEVLKVENCNQLEEIFDLE 977

Query: 80   ELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPE----------LRYLAIEN 129
             LN D  H+G L PKL E+ L     L+        IIE+ +          LR L+I  
Sbjct: 978  GLNVDGGHVG-LLPKLEEMCLTGCIPLEELILDGSRIIEIWQEQFPVESFCRLRVLSICE 1036

Query: 130  CPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTD--QIQPLFDEK---VAFPQLRYLEL 184
              D+   I +S++         EKLT      + +  Q++ L DE+    A  +LR LEL
Sbjct: 1037 YRDILVVIPSSMLQRL---HTLEKLTVRSCGSVKEVVQLEGLVDEENHFRALARLRELEL 1093

Query: 185  SRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN 244
            + L ++++LWKEN      F NL  LKI +C  L  LV  S    NLA+L++S C  LIN
Sbjct: 1094 NDLPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVPSSVSFHNLASLDISYCCSLIN 1153

Query: 245  VLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFC 304
            +L    ++SLV     KI    M+++++  + GE A   + F +L  + L  LP+LTSFC
Sbjct: 1154 LLPPLIAKSLVQHKIFKIGRSDMMKEVVANE-GENAGDEITFCKLEEIELCVLPNLTSFC 1212

Query: 305  LGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTI 364
             G Y+L FP LE VVV +CP MKIFSQG++  P+L++V     E G+++  W+ +LN TI
Sbjct: 1213 SGVYSLSFPVLERVVVEECPKMKIFSQGLLVTPRLDRV-----EVGNNKEHWKDDLNTTI 1267

Query: 365  KKLFNEMNS 373
              LFN  N+
Sbjct: 1268 HLLFNTCNA 1276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083436|ref|XP_002307026.1| predicted protein [Populus trichocarpa] gi|222856475|gb|EEE94022.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 209/432 (48%), Gaps = 73/432 (16%)

Query: 2   IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNL 61
           +GF  +K L++  FP+L++ WH Q LP +FF+NL  L VD+    L A+P+ L++ +N+L
Sbjct: 326 VGFDGVKRLKVSDFPQLKKRWHCQ-LPFNFFSNLTSLTVDEYCYSLDALPSTLLQFMNDL 384

Query: 62  RWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMP 120
             L+VRNCD LE V  L+ L  ++  +    P L+EL L+ L  L+  CN   + I+E  
Sbjct: 385 LELQVRNCDLLEGVFDLKGLGPEEGRV--WLPCLYELNLIGLSSLRHICNTDPQGILEFR 442

Query: 121 ELRYLAIENCPDMETFISNSV----VH----VTTDNKEPEKLTSEENFFLTDQIQPLFDE 172
            L +L + +C  +    + S+    VH    V  +  + E++ ++E     + +      
Sbjct: 443 NLNFLEVHDCSSLINIFTPSMALSLVHLQKIVIRNCDKMEEIITKERAGEEEAMN----- 497

Query: 173 KVAFPQLRYLELSRLHKVQHLW-------------------------------------- 194
           K+ FP L+ + L  L ++ +++                                      
Sbjct: 498 KIIFPVLKVIILESLPELSNIYSGSGVLNLTSLEEICIDDCPNMKIFISSLVEEPEPNSV 557

Query: 195 ------KENDESNKAFANLIRLKISECSKLQKL---------VTPSWHLENLATLEVSKC 239
                 ++    N  F  L+  K++   +L+KL         VT            +  C
Sbjct: 558 GKGKEQRQGQGGNYNFTALLNYKVA-FPELKKLRVDWNTIMEVTQRGQFRTEFFCRLKSC 616

Query: 240 HGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 299
            GL+N+ T ST++SLV L ++ IA CK +  ++  Q G+EA   ++F +L YL L  L +
Sbjct: 617 LGLLNLFTSSTAKSLVQLVKLTIAHCKKMTVVVARQGGDEADDEIIFSKLEYLELLDLQN 676

Query: 300 LTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGN 359
           LTSFC  NYA  FPSL+ +VV +CP MK FS GV+  PKL  V   +         W GN
Sbjct: 677 LTSFCFENYAFRFPSLKEMVVEECPNMKSFSPGVLSTPKLQGVHWKKYSKNTVH--WHGN 734

Query: 360 LNDTIKKLFNEM 371
           L+ TI+ L+ EM
Sbjct: 735 LDITIQHLYTEM 746

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera]

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 201/417 (48%), Gaps = 58/417 (13%)

Query: 7    IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEV 66
            +  L L   P++++IW+     +  F NL+ + +D+C ++ +  PA+L+R L  L+ L V
Sbjct: 1029 LSQLILRSLPKVEKIWNEDPHGILNFQNLQSITIDECQSLKNLFPASLVRDLVQLQELHV 1088

Query: 67   RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 126
              C  +EE++  +  N        +FPK+  L L  L +L+ F          P L+ L 
Sbjct: 1089 LCC-GIEEIVAKD--NGVDTQATFVFPKVTSLELSYLHQLRSFYPGAHPSW-WPSLKQLT 1144

Query: 127  IENCPDMETFISNSVV----HVTTDNKEP------------EKLTSEENFFLTDQIQPLF 170
            +  C  +  F   +      H   +   P            E+LT + N     +I P  
Sbjct: 1145 VRECYKVNVFAFENPTFRQRHHEGNLDMPLSLLQPVEFPNLEELTLDHN--KDTEIWPEQ 1202

Query: 171  DEKVAFPQLRYLE----------------------LSRLHKV--------QHLWKENDES 200
                +FP+LR L+                      L RL ++         HLWKEN + 
Sbjct: 1203 FPVDSFPRLRVLDDVIQFKEVFQLEGLDNENQAKRLGRLREIWLCDLPELTHLWKENSKP 1262

Query: 201  NKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRM 260
                 +L  L++  C +L  LV  S   +NLATL+V  C  L ++++ S ++SLV L  +
Sbjct: 1263 GLDLLSLKSLEVRNCVRLINLVPSSASFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTL 1322

Query: 261  KIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 320
            KI    M+E+++  + GE A   + F +L ++ L CL +LTSF  G Y   FPSLEH+V+
Sbjct: 1323 KIGGSHMMEEVVANEEGEAADE-IAFCKLQHMALKCLSNLTSFSSGGYIFSFPSLEHMVL 1381

Query: 321  RQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKEKI 377
            ++CP MKIFS G+V  P+L ++K      GDDE  W+ +LN TI  LF   + +E I
Sbjct: 1382 KKCPKMKIFSPGLVTTPRLERIKV-----GDDEWHWQDDLNTTIHNLFINKHDEETI 1433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 86/453 (18%)

Query: 2   IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNL 61
           +    +  L L   P++++IW+     +  F NL+ + +D C ++ +  PA+L++ L  L
Sbjct: 307 VTVTQLSQLILRLLPKVEKIWNKDPHGILNFQNLKSIFIDKCQSLKNLFPASLVKDLVQL 366

Query: 62  RWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPE 121
             LE+R+C  +EE++  +  N  +     +FPK+  L L++L +L+ F     +  + P 
Sbjct: 367 EKLELRSC-GIEEIVAKD--NEAETAAKFVFPKVTSLILVNLHQLRSFYP-GAHTSQWPL 422

Query: 122 LRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ-PLFDEKV------ 174
           L+ L +  C  +  F S +       ++    + S +  FL  Q+  P  +E +      
Sbjct: 423 LKELIVRACDKVNVFASETPTFQRRHHEGSFDMPSLQPLFLLQQVALPYLEELILNDNGN 482

Query: 175 -----------AFPQLRYLE---------------------------------------- 183
                      +FP+LRYL+                                        
Sbjct: 483 TEIWQEQFPMDSFPRLRYLKVYGYIDILVVIPSFMLQRSHNLEKLNVRRCSSVKEIFQLE 542

Query: 184 ----------LSRLHKV--------QHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 225
                     L RL ++         HLWKEN +S     +L  L++  C  L  LV  S
Sbjct: 543 GLDEENQAQRLGRLREIWLRDLPALTHLWKENSKSILDLQSLESLEVWNCDSLISLVPCS 602

Query: 226 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVV 285
              +NL TL+V  C  L ++++ S ++SLV L ++KI    M+E+++  + G EA   + 
Sbjct: 603 VSFQNLDTLDVWSCSNLRSLISPSVAKSLVKLRKLKIGGLHMMEEVVANE-GGEAVDEIA 661

Query: 286 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPT 345
           F +L ++ L CLP+LTSF  G Y   FPSLEH+VV +CP MKIFS  +V  PKL +V   
Sbjct: 662 FYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKMKIFSPSLVTTPKLERV--- 718

Query: 346 EEEDGDDEGCWEGNLNDTIKKLFNEMNSKEKIE 378
             E  DDE  W  +LN TI  LF + +   ++E
Sbjct: 719 --EVADDEWHWHNDLNTTIHNLFKKTHGNVEVE 749

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344895|ref|XP_003636521.1| Resistance protein RGC2, partial [Medicago truncatula] gi|355502456|gb|AES83659.1| Resistance protein RGC2, partial [Medicago truncatula]

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 190/362 (52%), Gaps = 14/362 (3%)

Query: 7   IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEV 66
           +K L+L + P+L+ +W         F NL  + V DC +++S  P ++ R +  L+ L V
Sbjct: 113 LKKLKLSNLPKLKHVWKEDPHYTMRFQNLSVVSVADCKSLISLFPLSVARDMMQLQSLLV 172

Query: 67  RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 126
            NC  +EE++  EE     E +  +FP L  + L +L KLK F     ++ +   L+ + 
Sbjct: 173 SNC-GIEEIVVKEE--GPDEMVKFVFPHLTSIELDNLTKLKAFFVGVHSL-QCKSLKTIK 228

Query: 127 IENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 186
           +  CP +E F +  +    +     + +++ +  F+ ++   L     + PQ R LEL +
Sbjct: 229 LFKCPRIELFKAEPLKLQESSKNVEQNISTYQPLFVFEE--ELLTSVESTPQFRELELLQ 286

Query: 187 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 246
           LHK++++ KE  + +     L  + + +CS L KLV  S     +  LEV+ C+GLIN++
Sbjct: 287 LHKLKYICKEGFQMDPFLHFLESIDVCQCSSLIKLVPSSVTFSYMTYLEVTNCNGLINLI 346

Query: 247 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 306
           T ST++SLV L  MKI  C  +E I+  +  E+    +VF  L  L L  L  L  FC  
Sbjct: 347 THSTAKSLVKLTTMKIEMCNWLEDIVNGK--EDETNEIVFCSLQTLELISLQRLIRFCSC 404

Query: 307 NYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKK 366
              + FP LE VVV++CP M++FS GV +   L  V+       D+E   EG+LN TIKK
Sbjct: 405 PCPIMFPLLEVVVVKECPRMELFSLGVTNTTNLQNVQ------TDEENHREGDLNRTIKK 458

Query: 367 LF 368
           +F
Sbjct: 459 MF 460

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula]

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 200/419 (47%), Gaps = 65/419 (15%)

Query: 7   IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEV 66
           +K L+L + P+L+ +W         F NL  + V++CT+++S  P  + R +  L+ L V
Sbjct: 109 LKKLKLSNVPKLKHVWKEDPHDTMRFQNLSEVSVEECTSLISIFPLTVARDMMQLQSLRV 168

Query: 67  RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 126
            NC  +EE++  EE     E +  +F  L  + L  LPKLK F     ++ +   L+ + 
Sbjct: 169 SNC-GIEEIVAKEE--GTNEIVNFVFSHLTFIRLELLPKLKAFFVGVHSL-QCKSLKTIY 224

Query: 127 IENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ---------------PLFD 171
           +  CP +E F    + H  +   +   +++ +  F+ ++ Q                 + 
Sbjct: 225 LFGCPKIELF-KTELRHQESSRSDVLNISTYQPLFVIEESQYSGVQFNNVKHIDVCEFYT 283

Query: 172 EKVAFP----------------------------------------QLRYLELSRLHKVQ 191
           E+  FP                                        +L+ LEL +LH++Q
Sbjct: 284 EEATFPYWFLKNVPSLESLLVQWSLFTEIFQGEQLISTEKETQISPRLKQLELGQLHRLQ 343

Query: 192 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTS 251
           ++ KE  + +     +  + ++ CS L KLV  S     L  LEV+ C+GLIN++T ST+
Sbjct: 344 YICKEGFKMDPILHFIESINVNHCSSLIKLVPSSVTFTYLTYLEVTSCNGLINLITYSTA 403

Query: 252 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALE 311
           +SLV L  MKI  C ++E I+  +  E  +  + F  L  L L  LP +  FC     + 
Sbjct: 404 KSLVKLTTMKIKMCNLLEDIVNGKEDETKE--IEFCSLQSLELISLPRVCRFCSCPCPIT 461

Query: 312 FPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNE 370
           FP LE VVV++CP M++ S GV + P L  V+    E+ ++E  WEG+LN ++KKLF++
Sbjct: 462 FPLLEVVVVKECPRMELLSLGVTNTPNLQIVQI---EESNEENHWEGDLNRSVKKLFDD 517

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826471|emb|CAN72797.1| hypothetical protein VITISV_031250 [Vitis vinifera]

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 200/432 (46%), Gaps = 75/432 (17%)

Query: 3    GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLR 62
             F  ++ L + +   ++ +WH Q    SF+  L+HL V  C  +L+  P ++ + L  L 
Sbjct: 842  AFPXLEXLHVENLDNVRALWHNQLSADSFYK-LKHLHVASCNKILNVFPLSVAKALVQLE 900

Query: 63   WLEVRNCDSLEEVLHLEELNADKEHIGPLF--PKLFELTLMDLPKLKRFCNFTENIIEMP 120
             L + +C+ LE ++  E+ + D++   PLF  PKL   TL  L +LKRF +        P
Sbjct: 901  DLCILSCEXLEVIVVNEDEDEDEDETTPLFLFPKLTSFTLESLHQLKRFYS-GRFASRWP 959

Query: 121  ELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDE-------- 172
             L+ L + NC  +E       +    DNK  + L     F +  +  P  +E        
Sbjct: 960  LLKELKVCNCDKVEILFQEIGLEGELDNKIQQSL-----FLVEKEAFPNLEELRLTLKGX 1014

Query: 173  ---------KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS------K 217
                     +V+F +LR L +++ H +  +   N    +   NL RL++++C       +
Sbjct: 1015 VEIWRGQFSRVSFSKLRVLNITKCHGILVVISSN--MVQILHNLERLEVTKCDSVNEVIQ 1072

Query: 218  LQKLVTPSWH---------------------------LENLATLEVSKCHGLINVLTLST 250
            +++L +  +H                           L++  TLE+  C  LIN++TLS 
Sbjct: 1073 VERLSSEEFHVDTLPRLTEIHLEDLPMLMHLSGLSRYLQSFETLEIVSCGSLINLVTLSM 1132

Query: 251  SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 310
            ++ LV L  + I +C M+++I+  +  E     + F  L  L LDCLP+L SFC   YA 
Sbjct: 1133 AKRLVQLKTLIIKECHMVKEIVANEGDEPPNDEIDFTRLTRLELDCLPNLKSFCSARYAF 1192

Query: 311  EFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDD--------------EGCW 356
             FPSLE + V  CP MK F +GV+D P+L  V+  +  +  D              E CW
Sbjct: 1193 RFPSLEEISVAACPKMKFFCKGVLDTPRLKCVQTGDHSEVLDTPRLQCVQMGDLFFERCW 1252

Query: 357  EGNLNDTIKKLF 368
            E +LN TI K+F
Sbjct: 1253 ESDLNTTIHKMF 1264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 170/354 (48%), Gaps = 65/354 (18%)

Query: 19   QEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHL 78
            + IWHG+       ++L+ L+V++C +       ++IR    L  LE+ NC+ +E ++  
Sbjct: 934  ETIWHGELSTAC--SHLKSLIVENCRDWKYLFTLSMIRSFIRLEKLEICNCEFMEGIIRT 991

Query: 79   EELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF-I 137
            EE + ++  I  +FP+                           L +L ++N  D+ +  I
Sbjct: 992  EEFSEEEGMIKLMFPR---------------------------LNFLKLKNLSDVSSLRI 1024

Query: 138  SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN 197
             + ++                                  P LR+LEL+RL+ ++++W  N
Sbjct: 1025 GHGLIEC--------------------------------PSLRHLELNRLNDLKNIWSRN 1052

Query: 198  DESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL 257
               +    N+  LK+  C  L  L  PS   +NL  LEV  C  +IN++T S + S+V L
Sbjct: 1053 IHFDPFLQNVEILKVQFCENLTNLAMPSASFQNLTCLEVLHCSKVINLVTSSVATSMVQL 1112

Query: 258  GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH 317
              M I DC M+  I+  +  E A G ++F +L  L L  L +LTSFCL      FPSLE 
Sbjct: 1113 VTMHIEDCDMLTGIVADEKDETA-GEIIFTKLKTLALVRLQNLTSFCLRGNTFNFPSLEE 1171

Query: 318  VVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEM 371
            V V +CP +++FS G+  A KL +V    E   +D+  WEGNLN TI+++++EM
Sbjct: 1172 VTVAKCPKLRVFSPGITIASKLERV--LIEFPSEDKWRWEGNLNATIEQMYSEM 1223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581680|ref|XP_002531643.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223528728|gb|EEF30739.1| Disease resistance protein RPS2, putative [Ricinus communis]

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 195/420 (46%), Gaps = 75/420 (17%)

Query: 22   WHGQALPVSF-FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 80
            W G     SF F NL+ L V  C+ +      ++   L  L+ LEV++CD + E+++ E 
Sbjct: 712  WQG-----SFDFKNLKILKVHSCSKLRYVFTPSMCLGLVQLQELEVKSCDVMAEIIN-EG 765

Query: 81   LNADKEHIGPLFPKLFELTLMDLPKLKRF-------------------------CNF--- 112
            L  ++ +   LFP L  + L  LP+L  F                         C F   
Sbjct: 766  LAMEETNKEVLFPLLNSIILESLPRLINFSSGSSVVQCPSLKEIRIVDCPTAFTCTFLGE 825

Query: 113  -----TENIIE----MPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF-- 161
                 T  IIE     P L  L I N  +++   S+ +   +    +  K+   E     
Sbjct: 826  AEANATHGIIEPEVVFPNLEELQILNMDNLKMIWSSQLQSDSFGKVKVLKMEQSEKLLKI 885

Query: 162  -----------LTDQI-------QPLFD--------EKVAFPQLRYLELSRLHKVQHLWK 195
                       L D I       + +FD        EKVA  QLR L +  L  ++H+W 
Sbjct: 886  YPSGMLRSLRNLEDLIIKKCSTLEVVFDLKEVTNIKEKVA-SQLRKLVMEDLPNLKHVWN 944

Query: 196  ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 255
            E+     +F  L  + +S+C  L  L   S   ++L TL++ KC+ L +++  ST++SL+
Sbjct: 945  EDRLGLVSFDKLSSVYVSQCDSLITLAPSSACFQSLTTLDLVKCNKLESLVASSTAKSLI 1004

Query: 256  NLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSL 315
             L  M I +C  +++I+  + G+E    ++F  L  L L CLPSL SFC   +  +FP L
Sbjct: 1005 QLTEMSIKECDGMKEILTNE-GDEPNEEIIFSRLRSLKLQCLPSLLSFCSSVHCFKFPFL 1063

Query: 316  EHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKE 375
              V+VRQCP M++FS+G V  PKL  V+   E+  D E  W GNLN TI++LF +M   E
Sbjct: 1064 TQVIVRQCPKMQVFSRGSVITPKLQSVQQLTEDKTDKER-WSGNLNATIQQLFIDMVDDE 1122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 124/195 (63%), Gaps = 8/195 (4%)

Query: 179  LRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 238
            LR+L L+ L  ++ +W +  + N++  NL  L++  C KL  L   S   +NLA+LEV +
Sbjct: 1376 LRHLTLNSLRDIRRIWNQECQPNQSLQNLETLEVMYCKKLINLAPSSATFKNLASLEVHE 1435

Query: 239  CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 298
            C+GL+++LT +T++SLV LG MK+++CKM+ +I+  + G+E +  + F +L  L LD L 
Sbjct: 1436 CNGLVSLLTSTTAKSLVQLGEMKVSNCKMLREIVANE-GDEMESEITFSKLESLRLDDLT 1494

Query: 299  SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWE- 357
             LT+ C  N  ++FPSLE ++V  CP M+ FS G++ APKL KV  T+E D      W  
Sbjct: 1495 RLTTVCSVNCRVKFPSLEELIVTACPRMEFFSHGIITAPKLEKVSLTKEGDK-----WRS 1549

Query: 358  -GNLNDTIKKLFNEM 371
             G+LN T ++L+ EM
Sbjct: 1550 VGDLNTTTQQLYREM 1564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.299	0.121	0.264	0.00043

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00043, Sum P(3) = 0.00043
 Identities = 33/125 (26%), Positives = 62/125 (49%)

Query:   206 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 265
             N++ + I     +Q+ + P +  +N+ T+ + +C  L ++  L  +  L   G + +++C
Sbjct:   700 NILEITIDWRCTIQREIIPQF--QNIRTMTIHRCEYLRDLTWLLLAPCL---GELSVSEC 754

Query:   266 KMIEQIIQLQVGEEAKGCVV---FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 322
               +E++I         G      F+ L  L LD LP L S       L FP LE++V+R+
Sbjct:   755 PQMEEVISKDKAMAKLGNTSEQPFQNLTKLVLDGLPKLESIYWT--PLPFPVLEYLVIRR 812

Query:   323 CPTMK 327
             CP ++
Sbjct:   813 CPELR 817

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-06

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 31/248 (12%)

Query: 29  VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHI 88
           +S   NL  L + DC++++  +P++ I+ LN L  L++  C++LE +             
Sbjct: 653 LSMATNLETLKLSDCSSLVE-LPSS-IQYLNKLEDLDMSRCENLEIL-----------PT 699

Query: 89  GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDN 148
           G     L+ L L    +LK F + + NI  + +L   AIE  P        S + +  +N
Sbjct: 700 GINLKSLYRLNLSGCSRLKSFPDISTNISWL-DLDETAIEEFP--------SNLRL--EN 748

Query: 149 KEPEKLTSEENFFLTDQIQPLFD-EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANL 207
            +   L   ++  L +++QPL     +  P L  L LS +  +  L      S +    L
Sbjct: 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKL 804

Query: 208 IRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 267
             L+I  C  L+ L T   +LE+L +L++S C  L     +ST+ S +NL R  I +   
Sbjct: 805 EHLEIENCINLETLPT-GINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW 863

Query: 268 -IEQIIQL 274
            IE+   L
Sbjct: 864 WIEKFSNL 871

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.7
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.6
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.58
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.55
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
KOG4341	483	consensus F-box protein containing LRR [General fu	99.38
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.33
KOG4341	483	consensus F-box protein containing LRR [General fu	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.18
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.12
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.07
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.9
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.89
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.74
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.43
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.42
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.18
PRK15386	426	type III secretion protein GogB; Provisional	98.17
PRK15386	426	type III secretion protein GogB; Provisional	98.16
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.15
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.86
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.65
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.55
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.49
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.49
PLN03150	623	hypothetical protein; Provisional	97.49
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.48
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.24
PLN03150	623	hypothetical protein; Provisional	97.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.86
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.07
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.55
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.37
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.61
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.67
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.73
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	89.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	87.58
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.41
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.43
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	82.07

>PLN03210 Resistant to P

Probab=99.89  E-value=5.4e-22  Score=211.54  Aligned_cols=288  Identities=20%  Similarity=0.337  Sum_probs=177.1

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +.+|++|++.++ .++.+|.+    +..+++|++|++++|.+++.+|.   +..+++|++|++.+|..+..+|....   
T Consensus       610 ~~~L~~L~L~~s-~l~~L~~~----~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~---  678 (1153)
T PLN03210        610 PENLVKLQMQGS-KLEKLWDG----VHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQ---  678 (1153)
T ss_pred             ccCCcEEECcCc-cccccccc----cccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhh---
Confidence            356777787777 57777543    46788888888888877776654   35778888888888877777665432   


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCcccccccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFF  161 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~  161 (384)
                             .+++|+.|++.+|..++.+|.   .+ .+++|+.|++++|..++.+|  ..+|++|.++++....++...   
T Consensus       679 -------~L~~L~~L~L~~c~~L~~Lp~---~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~---  744 (1153)
T PLN03210        679 -------YLNKLEDLDMSRCENLEILPT---GI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL---  744 (1153)
T ss_pred             -------ccCCCCEEeCCCCCCcCccCC---cC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc---
Confidence                   677888888888888888876   22 67888888888888877776  356788888766543333211   


Q ss_pred             ccCCcccccCCccccCCccEEeccccccccccccccc--c--cccccccccEEeeccCcccccccCCcccCCCcCEEEee
Q 016694          162 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND--E--SNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS  237 (384)
Q Consensus       162 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~--~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  237 (384)
                                   .+++|++|.+.++... .++....  .  ....+++|+.|++++|+.+..+|..+..+++|+.|+++
T Consensus       745 -------------~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls  810 (1153)
T PLN03210        745 -------------RLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE  810 (1153)
T ss_pred             -------------cccccccccccccchh-hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence                         2455555555543211 1111000  0  01234566677777666666666666666777777777


Q ss_pred             cCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccE
Q 016694          238 KCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH  317 (384)
Q Consensus       238 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~  317 (384)
                      +|+.++.++..  . .+++|+.|++++|..+..++..           .++|+.|++.+ ..++.++.  ....+++|++
T Consensus       811 ~C~~L~~LP~~--~-~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~  873 (1153)
T PLN03210        811 NCINLETLPTG--I-NLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSR-TGIEEVPW--WIEKFSNLSF  873 (1153)
T ss_pred             CCCCcCeeCCC--C-CccccCEEECCCCCcccccccc-----------ccccCEeECCC-CCCccChH--HHhcCCCCCE
Confidence            76666665321  1 4566677777766665544332           34555555554 24444433  2344556666


Q ss_pred             EEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          318 VVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       318 L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      |++++|++++.+|..+..+++|+.+++++|
T Consensus       874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        874 LDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             EECCCCCCcCccCcccccccCCCeeecCCC
Confidence            666666666555555555555555555555

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=8.3e-21  Score=201.30  Aligned_cols=61  Identities=16%  Similarity=0.118  Sum_probs=26.8

Q ss_pred             cccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecc
Q 016694          202 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD  264 (384)
Q Consensus       202 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~  264 (384)
                      ..+++|+.|+++++.....+|..+..+++|++|++++|.-...+  +..+..+++|+.|++++
T Consensus       257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI--PELVIQLQNLEILHLFS  317 (968)
T ss_pred             hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC--ChhHcCCCCCcEEECCC
Confidence            34445555555554333334444444555555555544311111  22333444555555544

>PLN03210 Resistant to P

Probab=99.84  E-value=6e-20  Score=195.94  Aligned_cols=276  Identities=24%  Similarity=0.362  Sum_probs=202.3

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++|+.|+++++..+..+    | .++.+++|++|++.+|..+..+|..  ++++++|++|++++|..++.+|...  
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~i----p-~ls~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~~i--  701 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEI----P-DLSMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPTGI--  701 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcC----C-ccccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCCcC--
Confidence            46789999999998777765    5 3688999999999999888887554  6799999999999998888887544  


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----CCCeeEEEecCCCCcccccc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSE  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~i~~~~~~~~~~~  157 (384)
                               .+++|++|++++|..++.+|.      ..++|+.|++.++. ++.+|    +++|++|.+.......+...
T Consensus       702 ---------~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        702 ---------NLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             ---------CCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCCc-cccccccccccccccccccccchhhcccc
Confidence                     678999999999988887775      24678999998854 55555    34567776655332211110


Q ss_pred             ccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEee
Q 016694          158 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS  237 (384)
Q Consensus       158 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  237 (384)
                      +.     .+...  ....+++|+.|++++++.+..++..    ...+++|+.|++++|..++.+|... .+++|+.|+++
T Consensus       766 ~~-----~l~~~--~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls  833 (1153)
T PLN03210        766 VQ-----PLTPL--MTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS  833 (1153)
T ss_pred             cc-----ccchh--hhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence            00     00000  0113578899999988777766443    4678899999999998888887665 68889999999


Q ss_pred             cCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccE
Q 016694          238 KCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH  317 (384)
Q Consensus       238 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~  317 (384)
                      +|..+..++  .   ...+|++|++.+ ..++.++..        ...+++|+.|++.+|++|+.++..  ...+++|+.
T Consensus       834 ~c~~L~~~p--~---~~~nL~~L~Ls~-n~i~~iP~s--------i~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~  897 (1153)
T PLN03210        834 GCSRLRTFP--D---ISTNISDLNLSR-TGIEEVPWW--------IEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLET  897 (1153)
T ss_pred             CCCcccccc--c---cccccCEeECCC-CCCccChHH--------HhcCCCCCEEECCCCCCcCccCcc--cccccCCCe
Confidence            998777652  2   236788888887 445555432        233888999999999998887663  567888899


Q ss_pred             EEeccCCCCCccC
Q 016694          318 VVVRQCPTMKIFS  330 (384)
Q Consensus       318 L~l~~c~~l~~lp  330 (384)
                      +++++|..++.++
T Consensus       898 L~l~~C~~L~~~~  910 (1153)
T PLN03210        898 VDFSDCGALTEAS  910 (1153)
T ss_pred             eecCCCccccccc
Confidence            9999998887554

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.83  E-value=4.1e-20  Score=196.05  Aligned_cols=236  Identities=15%  Similarity=0.095  Sum_probs=124.7

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|++|+++++.....+    |.  +.+++|++|++++| .+.+..|.. ++.+++|++|++++| .+....+.... 
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~----p~--~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~-  185 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSI----PR--GSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLT-  185 (968)
T ss_pred             cCCCCCEEECcCCcccccc----Cc--cccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccC-cccccCChhhh-
Confidence            5678888888888433333    32  46778888888877 444443433 467788888888877 44433222211 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCcc-ccc
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK-LTS  156 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~-~~~  156 (384)
                              .+++|++|+++++.....+|.   ....+++|+.|+++++......|     .++|++|+++++.... .+.
T Consensus       186 --------~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        186 --------NLTSLEFLTLASNQLVGQIPR---ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             --------hCcCCCeeeccCCCCcCcCCh---HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence                    566777777776664444444   45566677777776654332333     3456666666554321 111


Q ss_pred             cc---------cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCccc
Q 016694          157 EE---------NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH  227 (384)
Q Consensus       157 ~~---------~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~  227 (384)
                      .+         .+..+.-...++...+.+++|++|+++++.-...++..    ...+++|+.|+++++.....+|..+..
T Consensus       255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~l~~n~~~~~~~~~~~~  330 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL----VIQLQNLEILHLFSNNFTGKIPVALTS  330 (968)
T ss_pred             hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh----HcCCCCCcEEECCCCccCCcCChhHhc
Confidence            00         00001000111222334566666666655221121110    234566666666665544455555566


Q ss_pred             CCCcCEEEeecCCCCeeecccccccccCcccEEeeccc
Q 016694          228 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC  265 (384)
Q Consensus       228 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c  265 (384)
                      +++|+.|++++|.-...+  +..+..+++|+.|+++++
T Consensus       331 l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        331 LPRLQVLQLWSNKFSGEI--PKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             CCCCCEEECcCCCCcCcC--ChHHhCCCCCcEEECCCC
Confidence            666666666665422222  333455566666666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.70  E-value=4.7e-19  Score=166.90  Aligned_cols=292  Identities=15%  Similarity=0.143  Sum_probs=164.2

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      ++.||.+.+.++ +++..  +.|+.|..+..|.+|+|+.+ +++..|..  ...-+++-.|++++| +|+.+|...+.  
T Consensus        77 Lp~LRsv~~R~N-~LKns--GiP~diF~l~dLt~lDLShN-qL~EvP~~--LE~AKn~iVLNLS~N-~IetIPn~lfi--  147 (1255)
T KOG0444|consen   77 LPRLRSVIVRDN-NLKNS--GIPTDIFRLKDLTILDLSHN-QLREVPTN--LEYAKNSIVLNLSYN-NIETIPNSLFI--  147 (1255)
T ss_pred             chhhHHHhhhcc-ccccC--CCCchhcccccceeeecchh-hhhhcchh--hhhhcCcEEEEcccC-ccccCCchHHH--
Confidence            444444444444 33321  12555555555555555555 45544322  234455555555555 55555443332  


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCC----ccccc-CCCeeEEEecCCCCccccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD----METFI-SNSVVHVTTDNKEPEKLTSEE  158 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~----l~~~~-~~~L~~L~i~~~~~~~~~~~~  158 (384)
                             .+.-|-.|+++++. ++.+|+   .+..+.+|+.|.+++.|-    +..+| +++|..|+++++.-       
T Consensus       148 -------nLtDLLfLDLS~Nr-Le~LPP---Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR-------  209 (1255)
T KOG0444|consen  148 -------NLTDLLFLDLSNNR-LEMLPP---QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR-------  209 (1255)
T ss_pred             -------hhHhHhhhccccch-hhhcCH---HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc-------
Confidence                   33444455555444 555555   445555566666665442    22332 33444444444321       


Q ss_pred             cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeec
Q 016694          159 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK  238 (384)
Q Consensus       159 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  238 (384)
                            .+..++.++..+.+|+.+|++.+ ++..++..    ...+.+|+.|+++++ .++.+....+...+|+.|+++.
T Consensus       210 ------Tl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPec----ly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr  277 (1255)
T KOG0444|consen  210 ------TLDNIPTSLDDLHNLRDVDLSEN-NLPIVPEC----LYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR  277 (1255)
T ss_pred             ------hhhcCCCchhhhhhhhhcccccc-CCCcchHH----HhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc
Confidence                  22233344445667777777665 55554433    346677777777774 5666655556666777777776


Q ss_pred             CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEE
Q 016694          239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHV  318 (384)
Q Consensus       239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L  318 (384)
                      . .++.+  |+-...+++|++|.+.+ ++++      -.|++..+-.+.+|+.+...+ .+|+-++.  .+.+|+.|++|
T Consensus       278 N-QLt~L--P~avcKL~kL~kLy~n~-NkL~------FeGiPSGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL  344 (1255)
T KOG0444|consen  278 N-QLTVL--PDAVCKLTKLTKLYANN-NKLT------FEGIPSGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKL  344 (1255)
T ss_pred             c-hhccc--hHHHhhhHHHHHHHhcc-Cccc------ccCCccchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHh
Confidence            4 46665  44556677777777765 3332      223333333466666666655 45666554  36778888998


Q ss_pred             EeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694          319 VVRQCPTMKIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       319 ~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                      .++++ .+-++|+++.-++.|+++++.+|+
T Consensus       345 ~L~~N-rLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  345 KLDHN-RLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccccc-ceeechhhhhhcCCcceeeccCCc
Confidence            88554 566888888778889999988875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.60  E-value=2.3e-16  Score=147.79  Aligned_cols=307  Identities=14%  Similarity=0.096  Sum_probs=155.2

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      -.+++|+.+++..+ .++.|    |.-.+...+|+.|+|..| .+.++.... ...++.|+.||++.| .+.+++...+-
T Consensus        99 ~nl~nLq~v~l~~N-~Lt~I----P~f~~~sghl~~L~L~~N-~I~sv~se~-L~~l~alrslDLSrN-~is~i~~~sfp  170 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKN-ELTRI----PRFGHESGHLEKLDLRHN-LISSVTSEE-LSALPALRSLDLSRN-LISEIPKPSFP  170 (873)
T ss_pred             hcCCcceeeeeccc-hhhhc----ccccccccceeEEeeecc-ccccccHHH-HHhHhhhhhhhhhhc-hhhcccCCCCC
Confidence            46789999999988 67777    765455677999999887 556653333 457788888888888 77766543321


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCcccc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLT  155 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~  155 (384)
                               .-+++++|++.++. ++.+..  .....+.+|..|.+++ ++++.+|      ++.|+.|++..+.+.+.-
T Consensus       171 ---------~~~ni~~L~La~N~-It~l~~--~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  171 ---------AKVNIKKLNLASNR-ITTLET--GHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             ---------CCCCceEEeecccc-cccccc--ccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeeh
Confidence                     23457777776665 444432  1233444566666655 3444444      233444444443322110


Q ss_pred             ccccccccC----------Ccc----cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccc
Q 016694          156 SEENFFLTD----------QIQ----PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL  221 (384)
Q Consensus       156 ~~~~~~~~~----------~l~----~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l  221 (384)
                       +..+-+..          .+.    +.|.   .+.+++.|+++.+ ++..+..++   ...+++|+.|+++++ .+..+
T Consensus       238 -~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy---~l~kme~l~L~~N-~l~~vn~g~---lfgLt~L~~L~lS~N-aI~ri  308 (873)
T KOG4194|consen  238 -GLTFQGLPSLQNLKLQRNDISKLDDGAFY---GLEKMEHLNLETN-RLQAVNEGW---LFGLTSLEQLDLSYN-AIQRI  308 (873)
T ss_pred             -hhhhcCchhhhhhhhhhcCcccccCccee---eecccceeecccc-hhhhhhccc---ccccchhhhhccchh-hhhee
Confidence             00000000          000    0111   3455555555543 333332221   123445555555542 23333


Q ss_pred             cCC-cccCCCcCEEEeecCCCCeeecc-----------------------cccccccCcccEEeecccccccEecccccC
Q 016694          222 VTP-SWHLENLATLEVSKCHGLINVLT-----------------------LSTSESLVNLGRMKIADCKMIEQIIQLQVG  277 (384)
Q Consensus       222 ~~~-~~~~~~L~~L~l~~c~~l~~l~~-----------------------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  277 (384)
                      ... +..+++|+.|++++. .++.+..                       ...+..+.+|++|++.+ +.+. |... +.
T Consensus       309 h~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~-N~ls-~~IE-Da  384 (873)
T KOG4194|consen  309 HIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS-NELS-WCIE-DA  384 (873)
T ss_pred             ecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC-CeEE-EEEe-cc
Confidence            222 223344555555542 2333321                       12234455566666655 2232 2111 11


Q ss_pred             ccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          278 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                        ......++.|+.|.+.+ .+++.++..+ +.+++.||.|++.++...+.-|.++.++ .|+++.+...
T Consensus       385 --a~~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  385 --AVAFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             --hhhhccchhhhheeecC-ceeeecchhh-hccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence              12233366677777666 4566665543 5566777777776665444444555544 6666666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.58  E-value=5.6e-16  Score=145.27  Aligned_cols=312  Identities=15%  Similarity=0.122  Sum_probs=174.1

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      +.-+.|+++++ .+..+ .  +..+-+++||+.+++.+| .++.+|-.  ..-..+|+.|++..| .|.++.++...   
T Consensus        78 ~~t~~LdlsnN-kl~~i-d--~~~f~nl~nLq~v~l~~N-~Lt~IP~f--~~~sghl~~L~L~~N-~I~sv~se~L~---  146 (873)
T KOG4194|consen   78 SQTQTLDLSNN-KLSHI-D--FEFFYNLPNLQEVNLNKN-ELTRIPRF--GHESGHLEKLDLRHN-LISSVTSEELS---  146 (873)
T ss_pred             cceeeeecccc-ccccC-c--HHHHhcCCcceeeeeccc-hhhhcccc--cccccceeEEeeecc-ccccccHHHHH---
Confidence            44567999999 56653 2  444678999999999998 77877654  345577999999999 88888666643   


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCccccccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEE  158 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~  158 (384)
                            .++.|++|+++.+. +.+++.  .....-.++++|+++.. +++.+.      +.+|..|.++.+....++...
T Consensus       147 ------~l~alrslDLSrN~-is~i~~--~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~  216 (873)
T KOG4194|consen  147 ------ALPALRSLDLSRNL-ISEIPK--PSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRS  216 (873)
T ss_pred             ------hHhhhhhhhhhhch-hhcccC--CCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHH
Confidence                  78999999999876 666664  12222357999999984 555443      345778888877655444211


Q ss_pred             cc-------cc--cCCcccc-cCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccccc-CCccc
Q 016694          159 NF-------FL--TDQIQPL-FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWH  227 (384)
Q Consensus       159 ~~-------~~--~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~  227 (384)
                      .-       .+  ...++.+ +-.+..+++|+.|.+..+ ++..+-.+.   ...+.++++|++..+ .+..+. .++..
T Consensus       217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~---Fy~l~kme~l~L~~N-~l~~vn~g~lfg  291 (873)
T KOG4194|consen  217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGA---FYGLEKMEHLNLETN-RLQAVNEGWLFG  291 (873)
T ss_pred             hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcc---eeeecccceeecccc-hhhhhhcccccc
Confidence            00       00  0000000 001113344444443332 111111111   144566777777653 344432 23456


Q ss_pred             CCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCc-----------------cccceeeecccc
Q 016694          228 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGE-----------------EAKGCVVFEELG  290 (384)
Q Consensus       228 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~-----------------~~~~~~~~~~L~  290 (384)
                      +..|+.|++++. .+..+-...| ...++|++|+++. +.+++.....-.+                 ......++.+|+
T Consensus       292 Lt~L~~L~lS~N-aI~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  292 LTSLEQLDLSYN-AIQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH  368 (873)
T ss_pred             cchhhhhccchh-hhheeecchh-hhcccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence            777788888774 3555433333 3456777777776 3454443210000                 011222344444


Q ss_pred             eeecccCCCCceec--CCCcccCCCCccEEEeccCCCCCccCCC-CcCCCCCeeeccCCC
Q 016694          291 YLGLDCLPSLTSFC--LGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  347 (384)
Q Consensus       291 ~L~l~~c~~L~~l~--~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~i~~~  347 (384)
                      +|++++.. +...-  ....+..+++|++|.+.++ +++.+|.. +.+++.|+.+++.+|
T Consensus       369 ~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  369 KLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             hhcCcCCe-EEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence            44444321 11000  0012334777777777665 66777643 345777777777776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.56  E-value=1.8e-16  Score=149.74  Aligned_cols=272  Identities=22%  Similarity=0.260  Sum_probs=197.5

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +..|..|+++++ .+.++    |..+..-+|+-+|+|+.+ ++..+ |.+++-++..|-.||+++| .++.+|+...   
T Consensus       102 l~dLt~lDLShN-qL~Ev----P~~LE~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLDLS~N-rLe~LPPQ~R---  170 (1255)
T KOG0444|consen  102 LKDLTILDLSHN-QLREV----PTNLEYAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLDLSNN-RLEMLPPQIR---  170 (1255)
T ss_pred             cccceeeecchh-hhhhc----chhhhhhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhccccc-hhhhcCHHHH---
Confidence            567889999999 67777    888888899999999997 77777 5555669999999999999 9999998774   


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCC-ccccc-----CCCeeEEEecCCCCcccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD-METFI-----SNSVVHVTTDNKEPEKLTSE  157 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~-----~~~L~~L~i~~~~~~~~~~~  157 (384)
                             .+..|++|.+++++ +..+..  ...-.+++|++|.+++..+ +..+|     +.+|+.++++.++       
T Consensus       171 -------RL~~LqtL~Ls~NP-L~hfQL--rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-------  233 (1255)
T KOG0444|consen  171 -------RLSMLQTLKLSNNP-LNHFQL--RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-------  233 (1255)
T ss_pred             -------HHhhhhhhhcCCCh-hhHHHH--hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-------
Confidence                   78899999999988 544433  1223355677777777554 33444     3467777776544       


Q ss_pred             ccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEee
Q 016694          158 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS  237 (384)
Q Consensus       158 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  237 (384)
                              +..++...-++++|+.|+++++ .++.+...    .....+|+.|+++.+ .++.+|..+..+++|+.|.+.
T Consensus       234 --------Lp~vPecly~l~~LrrLNLS~N-~iteL~~~----~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n  299 (1255)
T KOG0444|consen  234 --------LPIVPECLYKLRNLRRLNLSGN-KITELNMT----EGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYAN  299 (1255)
T ss_pred             --------CCcchHHHhhhhhhheeccCcC-ceeeeecc----HHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhc
Confidence                    3333333336889999999987 45554222    255678999999874 688999999999999999887


Q ss_pred             cCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccE
Q 016694          238 KCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH  317 (384)
Q Consensus       238 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~  317 (384)
                      +. +++.-..|+.++.+.+|+.++.++ +.++-++.        ....++.|+.|.+.. ..|-.++.  ...-++-|+.
T Consensus       300 ~N-kL~FeGiPSGIGKL~~Levf~aan-N~LElVPE--------glcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~v  366 (1255)
T KOG0444|consen  300 NN-KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE--------GLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKV  366 (1255)
T ss_pred             cC-cccccCCccchhhhhhhHHHHhhc-cccccCch--------hhhhhHHHHHhcccc-cceeechh--hhhhcCCcce
Confidence            74 576666677788888889888886 45654432        233478888888854 55555554  2445788888


Q ss_pred             EEeccCCCCCccC
Q 016694          318 VVVRQCPTMKIFS  330 (384)
Q Consensus       318 L~l~~c~~l~~lp  330 (384)
                      |+++.++++-.=|
T Consensus       367 LDlreNpnLVMPP  379 (1255)
T KOG0444|consen  367 LDLRENPNLVMPP  379 (1255)
T ss_pred             eeccCCcCccCCC
Confidence            9988888774433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.55  E-value=9.5e-14  Score=139.63  Aligned_cols=252  Identities=19%  Similarity=0.154  Sum_probs=174.8

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      .-..|+++++ .+..+    |+.+.  .+|+.|++.+| +++.+|.     ..++|++|++++| .++.+|.        
T Consensus       202 ~~~~LdLs~~-~LtsL----P~~l~--~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~--------  259 (788)
T PRK15387        202 GNAVLNVGES-GLTTL----PDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV--------  259 (788)
T ss_pred             CCcEEEcCCC-CCCcC----Ccchh--cCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccC--------
Confidence            3567888888 67666    77654  58999999987 7887753     3589999999998 8887763        


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCcccccccccccc
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                           ..++|++|++.++. +..++.      ..++|+.|++.++ .++.+|  +++|++|+++.+.+..++        
T Consensus       260 -----lp~sL~~L~Ls~N~-L~~Lp~------lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp--------  318 (788)
T PRK15387        260 -----LPPGLLELSIFSNP-LTHLPA------LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLP--------  318 (788)
T ss_pred             -----cccccceeeccCCc-hhhhhh------chhhcCEEECcCC-ccccccccccccceeECCCCccccCC--------
Confidence                 34688899998876 666654      2357888888885 566665  467888888775532211        


Q ss_pred             CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCe
Q 016694          164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI  243 (384)
Q Consensus       164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  243 (384)
                             .   ...+|+.|+++++ .+..++.       ...+|+.|+++++ .++.+|..   .++|+.|+++++ .+.
T Consensus       319 -------~---lp~~L~~L~Ls~N-~L~~LP~-------lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L~  375 (788)
T PRK15387        319 -------A---LPSELCKLWAYNN-QLTSLPT-------LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLT  375 (788)
T ss_pred             -------C---CcccccccccccC-ccccccc-------cccccceEecCCC-ccCCCCCC---Ccccceehhhcc-ccc
Confidence                   1   1335777777765 4544321       2357889999874 57777653   356778888775 455


Q ss_pred             eecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 016694          244 NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC  323 (384)
Q Consensus       244 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c  323 (384)
                      .++  .   ..++|+.|+++++ .+..++..           +++|+.|+++++ .++.++.     ...+|+.|+++++
T Consensus       376 ~LP--~---l~~~L~~LdLs~N-~Lt~LP~l-----------~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~N  432 (788)
T PRK15387        376 SLP--A---LPSGLKELIVSGN-RLTSLPVL-----------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN  432 (788)
T ss_pred             cCc--c---cccccceEEecCC-cccCCCCc-----------ccCCCEEEccCC-cCCCCCc-----chhhhhhhhhccC
Confidence            542  2   2357888999874 46655433           568899999885 4666543     2357888888876


Q ss_pred             CCCCccCCCCcCCCCCeeeccCCC
Q 016694          324 PTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       324 ~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                       +++.+|..+..+++|+.+++++|
T Consensus       433 -qLt~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        433 -QLTRLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             -cccccChHHhhccCCCeEECCCC
Confidence             57889988888889999999988

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.48  E-value=1.6e-16  Score=142.75  Aligned_cols=303  Identities=15%  Similarity=0.109  Sum_probs=189.5

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      +++.|++|+...+ .++.+    |+.++.+.+|..||+.++ ++..+|.   +.+|..|++|+++.+ .++.++++... 
T Consensus       181 ~m~~L~~ld~~~N-~L~tl----P~~lg~l~~L~~LyL~~N-ki~~lPe---f~gcs~L~Elh~g~N-~i~~lpae~~~-  249 (565)
T KOG0472|consen  181 AMKRLKHLDCNSN-LLETL----PPELGGLESLELLYLRRN-KIRFLPE---FPGCSLLKELHVGEN-QIEMLPAEHLK-  249 (565)
T ss_pred             HHHHHHhcccchh-hhhcC----ChhhcchhhhHHHHhhhc-ccccCCC---CCccHHHHHHHhccc-HHHhhHHHHhc-
Confidence            3556777776666 56666    777888888888888887 5666642   467777777777777 67777665532 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccC--C--CeeEEEecCCCCccccc--
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS--N--SVVHVTTDNKEPEKLTS--  156 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~--~L~~L~i~~~~~~~~~~--  156 (384)
                              .++++..|++.++. ++++|.   .+..+.+|.+|++++ ..++.+|+  +  .|+.|.+.|+++...-+  
T Consensus       250 --------~L~~l~vLDLRdNk-lke~Pd---e~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGNPlrTiRr~i  316 (565)
T KOG0472|consen  250 --------HLNSLLVLDLRDNK-LKEVPD---EICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGNPLRTIRREI  316 (565)
T ss_pred             --------ccccceeeeccccc-cccCch---HHHHhhhhhhhcccC-CccccCCcccccceeeehhhcCCchHHHHHHH
Confidence                    67788888888776 777777   667777888888887 45666653  2  35566666655432210  


Q ss_pred             --cc---------cccccC--------------CcccccCCccccCCccEEecccccccccccccccccccccccccEEe
Q 016694          157 --EE---------NFFLTD--------------QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLK  211 (384)
Q Consensus       157 --~~---------~~~~~~--------------~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~  211 (384)
                        +.         ..+.|+              .....|+....+.+.+.|+++.- ++..++.+-|.. +.-.-....+
T Consensus       317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea-~~~~~Vt~Vn  394 (565)
T KOG0472|consen  317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEA-AKSEIVTSVN  394 (565)
T ss_pred             HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHH-hhhcceEEEe
Confidence              00         001111              12223333335567777777664 333332221100 0000112222


Q ss_pred             ec-----------------------cCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccc
Q 016694          212 IS-----------------------ECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI  268 (384)
Q Consensus       212 l~-----------------------~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l  268 (384)
                      ++                       ....+..+|..+..+++|..|++++. -+.++  |.-.+++..|+.|+++.+ .+
T Consensus       395 fskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~L--P~e~~~lv~Lq~LnlS~N-rF  470 (565)
T KOG0472|consen  395 FSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDL--PEEMGSLVRLQTLNLSFN-RF  470 (565)
T ss_pred             cccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhc--chhhhhhhhhheeccccc-cc
Confidence            22                       22345566667788999999999985 36677  444567788999999874 55


Q ss_pred             cEecccccCccccceeeecccceeec--ccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCC
Q 016694          269 EQIIQLQVGEEAKGCVVFEELGYLGL--DCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTE  346 (384)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~L~~L~l--~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~  346 (384)
                      ...+..           +-.++.+++  ..-..+..++.. ...++.+|..|++.++ .+..+|.+++++++|+.+.+++
T Consensus       471 r~lP~~-----------~y~lq~lEtllas~nqi~~vd~~-~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~g  537 (565)
T KOG0472|consen  471 RMLPEC-----------LYELQTLETLLASNNQIGSVDPS-GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDG  537 (565)
T ss_pred             ccchHH-----------HhhHHHHHHHHhccccccccChH-HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecC
Confidence            544433           333333332  233456666654 2678999999999775 6889999999999999999999


Q ss_pred             CC
Q 016694          347 EE  348 (384)
Q Consensus       347 ~~  348 (384)
                      ++
T Consensus       538 Np  539 (565)
T KOG0472|consen  538 NP  539 (565)
T ss_pred             Cc
Confidence            94

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=3.6e-12  Score=128.41  Aligned_cols=235  Identities=18%  Similarity=0.111  Sum_probs=166.7

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|+.|++.++ .++.+    |.   ..++|++|++++| +++.+|..     .++|++|++.+| .+..++.       
T Consensus       222 ~~L~~L~L~~N-~Lt~L----P~---lp~~Lk~LdLs~N-~LtsLP~l-----p~sL~~L~Ls~N-~L~~Lp~-------  279 (788)
T PRK15387        222 AHITTLVIPDN-NLTSL----PA---LPPELRTLEVSGN-QLTSLPVL-----PPGLLELSIFSN-PLTHLPA-------  279 (788)
T ss_pred             cCCCEEEccCC-cCCCC----CC---CCCCCcEEEecCC-ccCcccCc-----ccccceeeccCC-chhhhhh-------
Confidence            46899999998 67766    53   3589999999998 88887532     378999999999 7777654       


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCccccccccccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL  162 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~  162 (384)
                            ...+|+.|++.++. ++.+|.      ..++|+.|+++++ .++.+|  +..|+.|.+.++.+..         
T Consensus       280 ------lp~~L~~L~Ls~N~-Lt~LP~------~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~---------  336 (788)
T PRK15387        280 ------LPSGLCKLWIFGNQ-LTSLPV------LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTS---------  336 (788)
T ss_pred             ------chhhcCEEECcCCc-cccccc------cccccceeECCCC-ccccCCCCcccccccccccCcccc---------
Confidence                  33578889998875 676765      3578999999985 566554  3467777777654321         


Q ss_pred             cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCC
Q 016694          163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL  242 (384)
Q Consensus       163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  242 (384)
                            +..   ...+|+.|+++++ ++..++.       ..++|+.|+++++ .+..+|..   ..+|+.|+++++ .+
T Consensus       337 ------LP~---lp~~Lq~LdLS~N-~Ls~LP~-------lp~~L~~L~Ls~N-~L~~LP~l---~~~L~~LdLs~N-~L  394 (788)
T PRK15387        337 ------LPT---LPSGLQELSVSDN-QLASLPT-------LPSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RL  394 (788)
T ss_pred             ------ccc---cccccceEecCCC-ccCCCCC-------CCcccceehhhcc-ccccCccc---ccccceEEecCC-cc
Confidence                  111   2347899999886 5665532       2357888888874 56777643   357899999986 46


Q ss_pred             eeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 016694          243 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ  322 (384)
Q Consensus       243 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~  322 (384)
                      +.++  .   ..++|+.|+++++ .+..++..           +.+|+.|++++ .+++.++.  .+..+++|+.|++++
T Consensus       395 t~LP--~---l~s~L~~LdLS~N-~LssIP~l-----------~~~L~~L~Ls~-NqLt~LP~--sl~~L~~L~~LdLs~  454 (788)
T PRK15387        395 TSLP--V---LPSELKELMVSGN-RLTSLPML-----------PSGLLSLSVYR-NQLTRLPE--SLIHLSSETTVNLEG  454 (788)
T ss_pred             cCCC--C---cccCCCEEEccCC-cCCCCCcc-----------hhhhhhhhhcc-CcccccCh--HHhhccCCCeEECCC
Confidence            6552  2   2367899999985 46665543           56788899877 45777654  366789999999999


Q ss_pred             CCCC
Q 016694          323 CPTM  326 (384)
Q Consensus       323 c~~l  326 (384)
                      ++.-
T Consensus       455 N~Ls  458 (788)
T PRK15387        455 NPLS  458 (788)
T ss_pred             CCCC
Confidence            8643

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.38  E-value=3.1e-15  Score=135.28  Aligned_cols=308  Identities=18%  Similarity=0.193  Sum_probs=188.0

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ..||.|.+.++..+..--...  -...++|++.|.+.+|.++++....++...|++|++|++.+|..++...-.      
T Consensus       138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk------  209 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK------  209 (483)
T ss_pred             cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH------
Confidence            358889999987665421111  124789999999999999998877888889999999999999777644211      


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccC-------CCeeEEEecCCCCcccccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS-------NSVVHVTTDNKEPEKLTSE  157 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-------~~L~~L~i~~~~~~~~~~~  157 (384)
                        .+...+++|++++++.|+.+..=.. ......+..++.+..++|...+.-.+       ..+.++++..         
T Consensus       210 --~la~gC~kL~~lNlSwc~qi~~~gv-~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~---------  277 (483)
T KOG4341|consen  210 --YLAEGCRKLKYLNLSWCPQISGNGV-QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH---------  277 (483)
T ss_pred             --HHHHhhhhHHHhhhccCchhhcCcc-hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh---------
Confidence              1112789999999999986654111 12233455677776677755432110       0122222222         


Q ss_pred             ccccccCCccc--ccCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccccc--CCcccCCCcCE
Q 016694          158 ENFFLTDQIQP--LFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLAT  233 (384)
Q Consensus       158 ~~~~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~  233 (384)
                           |..+.+  ++..-..+..|+.|+.++|.++.+......  .+.+.+|+.|.+..|..++..-  .-...++.|+.
T Consensus       278 -----c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~  350 (483)
T KOG4341|consen  278 -----CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLER  350 (483)
T ss_pred             -----hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhh
Confidence                 111111  001011466777788777776655433211  2456788888888877655431  11235677888


Q ss_pred             EEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcc---ccceeeecccceeecccCCCCceecCCCccc
Q 016694          234 LEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEE---AKGCVVFEELGYLGLDCLPSLTSFCLGNYAL  310 (384)
Q Consensus       234 L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~  310 (384)
                      +++..|....+......+.+++.|+.+.+++|..+++      .|+   .........|+.+++++||.+++-... ...
T Consensus       351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD------~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~  423 (483)
T KOG4341|consen  351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD------EGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLS  423 (483)
T ss_pred             hcccccceehhhhHhhhccCCchhccCChhhhhhhhh------hhhhhhhhccccccccceeeecCCCCchHHHHH-HHh
Confidence            8888876665543444556778888888888876652      221   112234667888888888877665442 355


Q ss_pred             CCCCccEEEeccCCCCCccCCC--CcCCCCCeeeccCC
Q 016694          311 EFPSLEHVVVRQCPTMKIFSQG--VVDAPKLNKVKPTE  346 (384)
Q Consensus       311 ~~~~L~~L~l~~c~~l~~lp~~--~~~~~~L~~l~i~~  346 (384)
                      .++.||.+++.+|..++.-+..  ..++|++++.....
T Consensus       424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA  461 (483)
T ss_pred             hCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence            6788888888888777654322  23566666655443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.34  E-value=7.4e-14  Score=137.55  Aligned_cols=64  Identities=22%  Similarity=0.349  Sum_probs=41.6

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceec
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVL   76 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   76 (384)
                      +.+|+.|+++.+ .+.++    |.++.++.+|+++.|.++ .+... |.+ +..+++|++|+++++ .+...|
T Consensus        67 l~~L~~ln~s~n-~i~~v----p~s~~~~~~l~~lnL~~n-~l~~l-P~~-~~~lknl~~LdlS~N-~f~~~P  130 (1081)
T KOG0618|consen   67 LSHLRQLNLSRN-YIRSV----PSSCSNMRNLQYLNLKNN-RLQSL-PAS-ISELKNLQYLDLSFN-HFGPIP  130 (1081)
T ss_pred             HHHHhhcccchh-hHhhC----chhhhhhhcchhheeccc-hhhcC-chh-HHhhhcccccccchh-ccCCCc
Confidence            345666666666 45555    666677788888888765 54555 333 467888888888887 554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.33  E-value=5.6e-15  Score=132.95  Aligned_cols=262  Identities=20%  Similarity=0.163  Sum_probs=178.8

Q ss_pred             CceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccc
Q 016694            7 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE   86 (384)
Q Consensus         7 L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   86 (384)
                      |+.|.++++ .++.+    -+.+.++..|.++++.++ ++...|+.  ++.+..++.++++.+ ++..+|.+.+      
T Consensus        47 l~~lils~N-~l~~l----~~dl~nL~~l~vl~~~~n-~l~~lp~a--ig~l~~l~~l~vs~n-~ls~lp~~i~------  111 (565)
T KOG0472|consen   47 LQKLILSHN-DLEVL----REDLKNLACLTVLNVHDN-KLSQLPAA--IGELEALKSLNVSHN-KLSELPEQIG------  111 (565)
T ss_pred             hhhhhhccC-chhhc----cHhhhcccceeEEEeccc-hhhhCCHH--HHHHHHHHHhhcccc-hHhhccHHHh------
Confidence            445556665 34443    334566777777777776 66666555  667777777777777 6777766554      


Q ss_pred             ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCc
Q 016694           87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQI  166 (384)
Q Consensus        87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l  166 (384)
                          ..++|..++.+... +.+++.   .++.+..|..++-.+.                                  .+
T Consensus       112 ----s~~~l~~l~~s~n~-~~el~~---~i~~~~~l~dl~~~~N----------------------------------~i  149 (565)
T KOG0472|consen  112 ----SLISLVKLDCSSNE-LKELPD---SIGRLLDLEDLDATNN----------------------------------QI  149 (565)
T ss_pred             ----hhhhhhhhhccccc-eeecCc---hHHHHhhhhhhhcccc----------------------------------cc
Confidence                56667777776665 444544   4455555555544442                                  22


Q ss_pred             ccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeec
Q 016694          167 QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL  246 (384)
Q Consensus       167 ~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~  246 (384)
                      ..+++..+.+.+|..+++.+. .+..++..    ..++..|++|+... +.++++|+.++.+.+|..|++... ++..+ 
T Consensus       150 ~slp~~~~~~~~l~~l~~~~n-~l~~l~~~----~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~l-  221 (565)
T KOG0472|consen  150 SSLPEDMVNLSKLSKLDLEGN-KLKALPEN----HIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFL-  221 (565)
T ss_pred             ccCchHHHHHHHHHHhhcccc-chhhCCHH----HHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccC-
Confidence            223333335667777777776 44444332    24588899988866 368999999999999999999885 56666 


Q ss_pred             ccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCC
Q 016694          247 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM  326 (384)
Q Consensus       247 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l  326 (384)
                       | .+.++..|++|+++. +.++-+++.       -..-++++..|++++ .++++++.+  ..-+++|++|+++++ .+
T Consensus       222 -P-ef~gcs~L~Elh~g~-N~i~~lpae-------~~~~L~~l~vLDLRd-Nklke~Pde--~clLrsL~rLDlSNN-~i  287 (565)
T KOG0472|consen  222 -P-EFPGCSLLKELHVGE-NQIEMLPAE-------HLKHLNSLLVLDLRD-NKLKEVPDE--ICLLRSLERLDLSNN-DI  287 (565)
T ss_pred             -C-CCCccHHHHHHHhcc-cHHHhhHHH-------Hhcccccceeeeccc-cccccCchH--HHHhhhhhhhcccCC-cc
Confidence             3 356788899999987 556655443       111378888999988 588888764  556889999999886 68


Q ss_pred             CccCCCCcCCCCCeeeccCCCC
Q 016694          327 KIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       327 ~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                      +.+|...+++ .|+.+.+++++
T Consensus       288 s~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  288 SSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ccCCcccccc-eeeehhhcCCc
Confidence            8999998877 89999999984

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.31  E-value=2.8e-14  Score=129.19  Aligned_cols=302  Identities=15%  Similarity=0.178  Sum_probs=205.4

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      .-||.|.+++|......+...+...++++++|.+.+|..+++.-        +..+...+++|++|++..|..+++... 
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s--------~~sla~~C~~l~~l~L~~c~~iT~~~L-  208 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS--------LLSLARYCRKLRHLNLHSCSSITDVSL-  208 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH--------HHHHHHhcchhhhhhhcccchhHHHHH-
Confidence            36899999999888877777778899999999999996554321        111123789999999999998888765 


Q ss_pred             cccccCCCCceeEeeccCCCcccccCC-------CeeEEEecCCCCccccccccccccCCcc--cccCCccccCCccEEe
Q 016694          113 TENIIEMPELRYLAIENCPDMETFISN-------SVVHVTTDNKEPEKLTSEENFFLTDQIQ--PLFDEKVAFPQLRYLE  183 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~L~~L~i~~~~~~~~~~~~~~~~~~~l~--~l~~~~~~~~~L~~L~  183 (384)
                      ......|++|+++++++|+.++.-...       .++.+...              +|....  .+....+.++-+.+++
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k--------------GC~e~~le~l~~~~~~~~~i~~ln  274 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK--------------GCLELELEALLKAAAYCLEILKLN  274 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc--------------ccccccHHHHHHHhccChHhhccc
Confidence            445667999999999999988752111       11112111              232221  1111122456677778


Q ss_pred             cccccccccccccccccccccccccEEeeccCcccccccC--CcccCCCcCEEEeecCCCCeeecccccccccCcccEEe
Q 016694          184 LSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT--PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMK  261 (384)
Q Consensus       184 l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~  261 (384)
                      +..|..+++.....  ....+..|+.|..++|..++..+.  -..++++|+.+.+++|..+++........+.+.|+.++
T Consensus       275 l~~c~~lTD~~~~~--i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~  352 (483)
T KOG4341|consen  275 LQHCNQLTDEDLWL--IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD  352 (483)
T ss_pred             hhhhccccchHHHH--HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence            77886666532110  124578899999999988775432  23478999999999999988875556667889999999


Q ss_pred             ecccccccEecccccCccccceeeecccceeecccCCCCceecCC---CcccCCCCccEEEeccCCCCCccCCC-CcCCC
Q 016694          262 IADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAP  337 (384)
Q Consensus       262 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~---~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~  337 (384)
                      +.+|..+.+-      ........+|.|+.|.++.|..+++-.+.   ....++..|+.+++++|+.++.-..+ ....+
T Consensus       353 ~e~~~~~~d~------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  353 LEECGLITDG------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             ccccceehhh------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            9998755422      12335566999999999999888776331   12345788999999999987643222 23477


Q ss_pred             CCeeeccCCCCCCCCccccCCchHHHHHHHHhhcccc
Q 016694          338 KLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSK  374 (384)
Q Consensus       338 ~L~~l~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  374 (384)
                      +|+.+++..+.         +-..++|..+-...|+.
T Consensus       427 ~Leri~l~~~q---------~vtk~~i~~~~~~lp~i  454 (483)
T KOG4341|consen  427 NLERIELIDCQ---------DVTKEAISRFATHLPNI  454 (483)
T ss_pred             ccceeeeechh---------hhhhhhhHHHHhhCccc
Confidence            89988888771         11224566665555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.31  E-value=9.9e-12  Score=125.73  Aligned_cols=243  Identities=15%  Similarity=0.161  Sum_probs=125.4

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      +...|+++++ .+..+    |..+  .++|+.|++++| +++.+|.. +   ..+|++|++++| .++.++..       
T Consensus       179 ~~~~L~L~~~-~LtsL----P~~I--p~~L~~L~Ls~N-~LtsLP~~-l---~~nL~~L~Ls~N-~LtsLP~~-------  238 (754)
T PRK15370        179 NKTELRLKIL-GLTTI----PACI--PEQITTLILDNN-ELKSLPEN-L---QGNIKTLYANSN-QLTSIPAT-------  238 (754)
T ss_pred             CceEEEeCCC-CcCcC----Cccc--ccCCcEEEecCC-CCCcCChh-h---ccCCCEEECCCC-ccccCChh-------
Confidence            4567777776 55555    5443  247888888877 66766432 2   257888888887 67766431       


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCC
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ  165 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~  165 (384)
                           ..++|+.|+++++. ++.+|.   .+  ..+|+.|+++++ .++.+|.                           
T Consensus       239 -----l~~~L~~L~Ls~N~-L~~LP~---~l--~s~L~~L~Ls~N-~L~~LP~---------------------------  279 (754)
T PRK15370        239 -----LPDTIQEMELSINR-ITELPE---RL--PSALQSLDLFHN-KISCLPE---------------------------  279 (754)
T ss_pred             -----hhccccEEECcCCc-cCcCCh---hH--hCCCCEEECcCC-ccCcccc---------------------------
Confidence                 23467788887776 556654   11  246777777653 4443331                           


Q ss_pred             cccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeee
Q 016694          166 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINV  245 (384)
Q Consensus       166 l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  245 (384)
                            .  -.++|+.|+++++ ++..++..      ..++|+.|+++++ .++.+|..+  .++|+.|++++|. ++.+
T Consensus       280 ------~--l~~sL~~L~Ls~N-~Lt~LP~~------lp~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~-Lt~L  340 (754)
T PRK15370        280 ------N--LPEELRYLSVYDN-SIRTLPAH------LPSGITHLNVQSN-SLTALPETL--PPGLKTLEAGENA-LTSL  340 (754)
T ss_pred             ------c--cCCCCcEEECCCC-ccccCccc------chhhHHHHHhcCC-ccccCCccc--cccceeccccCCc-cccC
Confidence                  0  1234555555554 34333211      1234555555553 344443322  2456666666553 4333


Q ss_pred             cccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 016694          246 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT  325 (384)
Q Consensus       246 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~  325 (384)
                      +  ...  .++|+.|++++| .+..++..          ..++|+.|++++| +|+.++..  .  .++|+.|++++| +
T Consensus       341 P--~~l--~~sL~~L~Ls~N-~L~~LP~~----------lp~~L~~LdLs~N-~Lt~LP~~--l--~~sL~~LdLs~N-~  399 (754)
T PRK15370        341 P--ASL--PPELQVLDVSKN-QITVLPET----------LPPTITTLDVSRN-ALTNLPEN--L--PAALQIMQASRN-N  399 (754)
T ss_pred             C--hhh--cCcccEEECCCC-CCCcCChh----------hcCCcCEEECCCC-cCCCCCHh--H--HHHHHHHhhccC-C
Confidence            1  111  145666666654 23333211          1345666666654 34444321  1  134666666654 3


Q ss_pred             CCccCCCCc----CCCCCeeeccCCC
Q 016694          326 MKIFSQGVV----DAPKLNKVKPTEE  347 (384)
Q Consensus       326 l~~lp~~~~----~~~~L~~l~i~~~  347 (384)
                      +..+|..+.    ..+++..+.+.+|
T Consensus       400 L~~LP~sl~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        400 LVRLPESLPHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             cccCchhHHHHhhcCCCccEEEeeCC
Confidence            445554332    1355566666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.18  E-value=6.1e-11  Score=120.07  Aligned_cols=101  Identities=20%  Similarity=0.253  Sum_probs=74.3

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|+.|+++++ .+..+    |..+  +.+|++|++++| +++.+|. .+   .++|++|++++| .+..+|...     
T Consensus       199 ~~L~~L~Ls~N-~LtsL----P~~l--~~nL~~L~Ls~N-~LtsLP~-~l---~~~L~~L~Ls~N-~L~~LP~~l-----  260 (754)
T PRK15370        199 EQITTLILDNN-ELKSL----PENL--QGNIKTLYANSN-QLTSIPA-TL---PDTIQEMELSIN-RITELPERL-----  260 (754)
T ss_pred             cCCcEEEecCC-CCCcC----Chhh--ccCCCEEECCCC-ccccCCh-hh---hccccEEECcCC-ccCcCChhH-----
Confidence            46899999999 67776    6543  469999999998 7887743 22   258999999999 787775422     


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI  137 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  137 (384)
                             ..+|+.|+++++. ++.+|.   .+  .++|+.|++++| .++.+|
T Consensus       261 -------~s~L~~L~Ls~N~-L~~LP~---~l--~~sL~~L~Ls~N-~Lt~LP  299 (754)
T PRK15370        261 -------PSALQSLDLFHNK-ISCLPE---NL--PEELRYLSVYDN-SIRTLP  299 (754)
T ss_pred             -------hCCCCEEECcCCc-cCcccc---cc--CCCCcEEECCCC-ccccCc
Confidence                   3579999998765 777765   22  358999999886 455443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.12  E-value=1.8e-11  Score=125.75  Aligned_cols=284  Identities=20%  Similarity=0.258  Sum_probs=158.6

Q ss_pred             CCCCceEecCCCcC-cceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            4 FRDIKYLQLGHFPR-LQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         4 ~~~L~~L~l~~~~~-~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      ++.|+.|-+.++.. +..+   ..+.+..++.|++|++++|..+..+|..  ++.|-+||+|+++++ .++.+|....  
T Consensus       544 ~~~L~tLll~~n~~~l~~i---s~~ff~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~t-~I~~LP~~l~--  615 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEI---SGEFFRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSDT-GISHLPSGLG--  615 (889)
T ss_pred             CCccceEEEeecchhhhhc---CHHHHhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccCC-CccccchHHH--
Confidence            34566666666632 2222   0112456788888888887777777544  677888888888887 7777766543  


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC-Cccccc---CCCeeEE---EecCCCCcccc
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP-DMETFI---SNSVVHV---TTDNKEPEKLT  155 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~---~~~L~~L---~i~~~~~~~~~  155 (384)
                              .+.+|.+|++..+..+..++.   ....+++|++|.+..-. ..+...   ..+|++|   .+......   
T Consensus       616 --------~Lk~L~~Lnl~~~~~l~~~~~---i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~---  681 (889)
T KOG4658|consen  616 --------NLKKLIYLNLEVTGRLESIPG---ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL---  681 (889)
T ss_pred             --------HHHhhheeccccccccccccc---hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH---
Confidence                    667778888877776655533   44457788888776532 111111   1122222   22211100   


Q ss_pred             ccccccccCCcccccCCccccCCccEE----ecccccccccccccccccccccccccEEeeccCcccccccCC-----cc
Q 016694          156 SEENFFLTDQIQPLFDEKVAFPQLRYL----ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-----SW  226 (384)
Q Consensus       156 ~~~~~~~~~~l~~l~~~~~~~~~L~~L----~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-----~~  226 (384)
                               .+.++    ..++.|.++    .+.++ .....    ......+.+|+.|.+.+|...+.....     ..
T Consensus       682 ---------~~e~l----~~~~~L~~~~~~l~~~~~-~~~~~----~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~  743 (889)
T KOG4658|consen  682 ---------LLEDL----LGMTRLRSLLQSLSIEGC-SKRTL----ISSLGSLGNLEELSILDCGISEIVIEWEESLIVL  743 (889)
T ss_pred             ---------hHhhh----hhhHHHHHHhHhhhhccc-cccee----ecccccccCcceEEEEcCCCchhhcccccccchh
Confidence                     00000    012222211    11111 11111    111356777888888887654322111     11


Q ss_pred             -cCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcc--ccceeeeccccee-ecccCCCCce
Q 016694          227 -HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEE--AKGCVVFEELGYL-GLDCLPSLTS  302 (384)
Q Consensus       227 -~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~--~~~~~~~~~L~~L-~l~~c~~L~~  302 (384)
                       .|+++..+.+.+|....++..   ..-.|+|+.|.+.+|..+++++.....-.  ......|..+..+ .+.+.+.++.
T Consensus       744 ~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~  820 (889)
T KOG4658|consen  744 LCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQ  820 (889)
T ss_pred             hhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCce
Confidence             255677777777776666533   23457888888888887777765421111  1134567777777 4666666666


Q ss_pred             ecCCCcccCCCCccEEEeccCCCCCccCCC
Q 016694          303 FCLGNYALEFPSLEHVVVRQCPTMKIFSQG  332 (384)
Q Consensus       303 l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~  332 (384)
                      +...  ....+.|+.+.+..|+++..+|..
T Consensus       821 i~~~--~l~~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  821 LYWL--PLSFLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             eEec--ccCccchhheehhcCcccccCccc
Confidence            6553  334566888899999888888854

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.07  E-value=1.4e-11  Score=121.85  Aligned_cols=253  Identities=19%  Similarity=0.173  Sum_probs=164.0

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|+.|+.++|+.. .+.. .    ..-.+|++++++.+ ++..+|  .+++.|.+|+.+.+..| .+..++....    
T Consensus       219 ~~l~~L~a~~n~l~-~~~~-~----p~p~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~N-~l~~lp~ri~----  284 (1081)
T KOG0618|consen  219 PSLTALYADHNPLT-TLDV-H----PVPLNLQYLDISHN-NLSNLP--EWIGACANLEALNANHN-RLVALPLRIS----  284 (1081)
T ss_pred             cchheeeeccCcce-eecc-c----cccccceeeecchh-hhhcch--HHHHhcccceEecccch-hHHhhHHHHh----
Confidence            56777777777533 2211 1    23468999999988 777775  66889999999999998 7777765543    


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCC-------CeeEEEecCCCCcccccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISN-------SVVHVTTDNKEPEKLTSE  157 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~L~~L~i~~~~~~~~~~~  157 (384)
                            ...+|+.|.+..+. ++.++.   ....+..|++|++.. ..+..+|..       .++.++.+.++....++-
T Consensus       285 ------~~~~L~~l~~~~ne-l~yip~---~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~  353 (1081)
T KOG0618|consen  285 ------RITSLVSLSAAYNE-LEYIPP---FLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY  353 (1081)
T ss_pred             ------hhhhHHHHHhhhhh-hhhCCC---cccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence                  56678888887776 777776   555678888888877 355555521       134444444444333311


Q ss_pred             c-------cccccC---CcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCccc
Q 016694          158 E-------NFFLTD---QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH  227 (384)
Q Consensus       158 ~-------~~~~~~---~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~  227 (384)
                      .       ..+.++   --..+|+.+..+.+|+.|+|+++ .+..++...   ..++..|++|++++ ++++.+|..+..
T Consensus       354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~---~~kle~LeeL~LSG-NkL~~Lp~tva~  428 (1081)
T KOG0618|consen  354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASK---LRKLEELEELNLSG-NKLTTLPDTVAN  428 (1081)
T ss_pred             cchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHH---HhchHHhHHHhccc-chhhhhhHHHHh
Confidence            0       011111   11234444457888899998887 566544432   25677888888888 478888887888


Q ss_pred             CCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCC
Q 016694          228 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS  299 (384)
Q Consensus       228 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  299 (384)
                      +..|++|...+. .+...  | -...++.|+.+|++. +.+.++... ..      ..-|+|++|++++.+.
T Consensus       429 ~~~L~tL~ahsN-~l~~f--P-e~~~l~qL~~lDlS~-N~L~~~~l~-~~------~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  429 LGRLHTLRAHSN-QLLSF--P-ELAQLPQLKVLDLSC-NNLSEVTLP-EA------LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhHHHhhcCC-ceeec--h-hhhhcCcceEEeccc-chhhhhhhh-hh------CCCcccceeeccCCcc
Confidence            888888877764 35444  3 345678888888885 556554322 11      1127889999888765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.90  E-value=1.4e-10  Score=107.44  Aligned_cols=39  Identities=15%  Similarity=0.034  Sum_probs=22.0

Q ss_pred             CCCCCccEEEeecCCCCcccC---chhHHhcCCCCCEEEEecc
Q 016694           30 SFFNNLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEVRNC   69 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~~   69 (384)
                      ..+.+|+.|++++| .++...   ........+.|++|+++++
T Consensus        20 ~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~   61 (319)
T cd00116          20 PKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLN   61 (319)
T ss_pred             HHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEecccc
Confidence            34566777787777 443211   1112335566777777766

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.89  E-value=6.4e-11  Score=95.29  Aligned_cols=160  Identities=21%  Similarity=0.203  Sum_probs=115.7

Q ss_pred             CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694           29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR  108 (384)
Q Consensus        29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  108 (384)
                      +..+.+...|.++.+ +++.+||.  +..+.+|+.|++.++ .++++|....          .+++|++|++.-+ .+..
T Consensus        29 Lf~~s~ITrLtLSHN-Kl~~vppn--ia~l~nlevln~~nn-qie~lp~~is----------sl~klr~lnvgmn-rl~~   93 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHN-KLTVVPPN--IAELKNLEVLNLSNN-QIEELPTSIS----------SLPKLRILNVGMN-RLNI   93 (264)
T ss_pred             ccchhhhhhhhcccC-ceeecCCc--HHHhhhhhhhhcccc-hhhhcChhhh----------hchhhhheecchh-hhhc
Confidence            456788899999998 77888665  569999999999999 8998887653          7889999998744 3666


Q ss_pred             cccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694          109 FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH  188 (384)
Q Consensus       109 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~  188 (384)
                      +|.   ..+.+|.|+.|++.... +.+-                            ++..-|.   .+..|+.|+++.+ 
T Consensus        94 lpr---gfgs~p~levldltynn-l~e~----------------------------~lpgnff---~m~tlralyl~dn-  137 (264)
T KOG0617|consen   94 LPR---GFGSFPALEVLDLTYNN-LNEN----------------------------SLPGNFF---YMTTLRALYLGDN-  137 (264)
T ss_pred             Ccc---ccCCCchhhhhhccccc-cccc----------------------------cCCcchh---HHHHHHHHHhcCC-
Confidence            666   77889999999998743 3221                            1111111   3566677777665 


Q ss_pred             ccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeee
Q 016694          189 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINV  245 (384)
Q Consensus       189 ~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  245 (384)
                      ..+.++.+    .+.+++|+.|.+++. .+-++|..++.+.+|++|+|.+. .++.+
T Consensus       138 dfe~lp~d----vg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn-rl~vl  188 (264)
T KOG0617|consen  138 DFEILPPD----VGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN-RLTVL  188 (264)
T ss_pred             CcccCChh----hhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc-eeeec
Confidence            44444332    477888888888874 56678888888888888888885 46655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.81  E-value=1.6e-10  Score=92.99  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=39.3

Q ss_pred             cccCCccEEeccccccccccccccccc-ccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeeccccccc
Q 016694          174 VAFPQLRYLELSRLHKVQHLWKENDES-NKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE  252 (384)
Q Consensus       174 ~~~~~L~~L~l~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~  252 (384)
                      |.+|.|+.||+.++ ++.+-.   .|+ ...+.-|+.|.+++. ..+.+|+.++.+.+|+.|.+.... +-++  +.-.+
T Consensus        99 gs~p~levldltyn-nl~e~~---lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~l--pkeig  170 (264)
T KOG0617|consen   99 GSFPALEVLDLTYN-NLNENS---LPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSL--PKEIG  170 (264)
T ss_pred             CCCchhhhhhcccc-cccccc---CCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhC--cHHHH
Confidence            35555666666554 222110   111 123444555555552 455555555666666666555532 3233  33334


Q ss_pred             ccCcccEEeecc
Q 016694          253 SLVNLGRMKIAD  264 (384)
Q Consensus       253 ~l~~L~~L~l~~  264 (384)
                      .+..|++|+|.+
T Consensus       171 ~lt~lrelhiqg  182 (264)
T KOG0617|consen  171 DLTRLRELHIQG  182 (264)
T ss_pred             HHHHHHHHhccc
Confidence            555566666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=5.2e-09  Score=107.90  Aligned_cols=250  Identities=20%  Similarity=0.225  Sum_probs=139.8

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCC-CcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTN-MLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ..+...+.++ .+..+    +.. ...++|++|-+.++.. +... +..++..++.|+.||+++|..+.++|....    
T Consensus       524 ~~rr~s~~~~-~~~~~----~~~-~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~----  592 (889)
T KOG4658|consen  524 SVRRMSLMNN-KIEHI----AGS-SENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIG----  592 (889)
T ss_pred             heeEEEEecc-chhhc----cCC-CCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHh----
Confidence            3444454444 34443    333 2455899999988753 4444 444567899999999999988888877664    


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCcccccccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEEN  159 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~~~~~~~  159 (384)
                            .+-+|++|+++++. +.++|.   .+.++..|.+|++.....+...+     +++|++|.+-....       .
T Consensus       593 ------~Li~LryL~L~~t~-I~~LP~---~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~-------~  655 (889)
T KOG4658|consen  593 ------ELVHLRYLDLSDTG-ISHLPS---GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL-------S  655 (889)
T ss_pred             ------hhhhhhcccccCCC-ccccch---HHHHHHhhheeccccccccccccchhhhcccccEEEeecccc-------c
Confidence                  67789999999876 778887   78888899999988766555443     45566666643210       0


Q ss_pred             ccccCCcccccCCccccCCccEEeccccccccccccccccccccccccc----EEeeccCcccccccCCcccCCCcCEEE
Q 016694          160 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI----RLKISECSKLQKLVTPSWHLENLATLE  235 (384)
Q Consensus       160 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~----~L~l~~~~~l~~l~~~~~~~~~L~~L~  235 (384)
                       .+...+..+    ..+.+|+.+....... ..+  .   ....+..|.    .+.+.+| .....+..+..+.+|+.|.
T Consensus       656 -~~~~~l~el----~~Le~L~~ls~~~~s~-~~~--e---~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~  723 (889)
T KOG4658|consen  656 -NDKLLLKEL----ENLEHLENLSITISSV-LLL--E---DLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELS  723 (889)
T ss_pred             -cchhhHHhh----hcccchhhheeecchh-HhH--h---hhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEE
Confidence             000001111    1344444444432211 000  0   001122222    3333332 2334445567777788888


Q ss_pred             eecCCCCeeec---ccccccc-cCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceec
Q 016694          236 VSKCHGLINVL---TLSTSES-LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFC  304 (384)
Q Consensus       236 l~~c~~l~~l~---~~~~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  304 (384)
                      +.+|...+...   ....... ++++..+.+.+|........         ....|+|+.|.+..|+.++++-
T Consensus       724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---------~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---------LLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             EEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch---------hhccCcccEEEEecccccccCC
Confidence            88876543221   0011111 45566666666655443321         1237788888888777766653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.74  E-value=1e-09  Score=101.65  Aligned_cols=119  Identities=15%  Similarity=0.017  Sum_probs=62.5

Q ss_pred             CCCCCceEecCCCcCcce-ecccCCCCCCCCCCccEEEeecCCCCcccC-----chhHHhcCCCCCEEEEecccCcceec
Q 016694            3 GFRDIKYLQLGHFPRLQE-IWHGQALPVSFFNNLRHLVVDDCTNMLSAI-----PANLIRCLNNLRWLEVRNCDSLEEVL   76 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~-i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~-----~~~~~~~l~~L~~L~l~~~~~l~~~~   76 (384)
                      .+.+|++|++.++. +.. -....+..+...++|++++++++. +...+     ....++.+++|++|++++| .+....
T Consensus        21 ~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~   97 (319)
T cd00116          21 KLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDG   97 (319)
T ss_pred             HHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhH
Confidence            35679999999984 421 011113345677889999998873 33111     1123456889999999998 444221


Q ss_pred             ccccccccccccCCcccccceeccCccccccc--cccCcccccCC-CCceeEeeccCC
Q 016694           77 HLEELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEM-PELRYLAIENCP  131 (384)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~-~~L~~L~l~~c~  131 (384)
                      ..... ....    . ++|++|+++++. +..  .+........+ ++|+.|++++|.
T Consensus        98 ~~~~~-~l~~----~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          98 CGVLE-SLLR----S-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HHHHH-HHhc----c-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            11110 0000    2 347777777665 221  00000122233 566666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=7.4e-09  Score=94.95  Aligned_cols=193  Identities=20%  Similarity=0.259  Sum_probs=114.9

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF  109 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  109 (384)
                      .++..|+.+.|++| .+...+....+..|++++.|+++.+ -+..+.+..   ..+.    .+|+|+.|+++.+. +..+
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~---~i~e----qLp~Le~LNls~Nr-l~~~  187 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVL---KIAE----QLPSLENLNLSSNR-LSNF  187 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHH---HHHH----hcccchhccccccc-ccCC
Confidence            46777888888876 4343332234667888888888877 443332211   1112    67778888887765 3333


Q ss_pred             ccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694          110 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK  189 (384)
Q Consensus       110 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~  189 (384)
                      .. ......++.|+.|.++.|.. +.-                            .+..+..   .+|+|+.|+++++..
T Consensus       188 ~~-s~~~~~l~~lK~L~l~~CGl-s~k----------------------------~V~~~~~---~fPsl~~L~L~~N~~  234 (505)
T KOG3207|consen  188 IS-SNTTLLLSHLKQLVLNSCGL-SWK----------------------------DVQWILL---TFPSLEVLYLEANEI  234 (505)
T ss_pred             cc-ccchhhhhhhheEEeccCCC-CHH----------------------------HHHHHHH---hCCcHHHhhhhcccc
Confidence            32 22333566777777777621 100                            1111111   588999999988742


Q ss_pred             cccccccccccccccccccEEeeccCccccccc--CCcccCCCcCEEEeecCCCCeeeccccc-----ccccCcccEEee
Q 016694          190 VQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLATLEVSKCHGLINVLTLST-----SESLVNLGRMKI  262 (384)
Q Consensus       190 l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----~~~l~~L~~L~l  262 (384)
                      ...   .. .....++.|++|+|++++.+. ++  ...+.++.|+.|.++.| ++.++..++.     ...+|+|++|.+
T Consensus       235 ~~~---~~-~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i  308 (505)
T KOG3207|consen  235 ILI---KA-TSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNI  308 (505)
T ss_pred             cce---ec-chhhhhhHHhhccccCCcccc-cccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeec
Confidence            211   11 113567789999999865443 33  45678899999999886 4666644433     346788888888


Q ss_pred             cccccccEec
Q 016694          263 ADCKMIEQII  272 (384)
Q Consensus       263 ~~c~~l~~~~  272 (384)
                      .+ +.+.+|.
T Consensus       309 ~~-N~I~~w~  317 (505)
T KOG3207|consen  309 SE-NNIRDWR  317 (505)
T ss_pred             cc-Ccccccc
Confidence            87 4455443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.3e-09  Score=93.68  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=62.1

Q ss_pred             CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCc
Q 016694           34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT  113 (384)
Q Consensus        34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  113 (384)
                      .|++++|++. .++......+..+|.+|+.|.+.|. .+.+-.....     .    .-.+|+.|+++.|..+++... .
T Consensus       186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~i-----A----kN~~L~~lnlsm~sG~t~n~~-~  253 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTI-----A----KNSNLVRLNLSMCSGFTENAL-Q  253 (419)
T ss_pred             hhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHH-----h----ccccceeeccccccccchhHH-H
Confidence            5888888875 5554444456778899999999887 5543322221     1    456789999999988877654 4


Q ss_pred             ccccCCCCceeEeeccCCCcc
Q 016694          114 ENIIEMPELRYLAIENCPDME  134 (384)
Q Consensus       114 ~~~~~~~~L~~L~l~~c~~l~  134 (384)
                      ....+|.+|..|++++|...+
T Consensus       254 ll~~scs~L~~LNlsWc~l~~  274 (419)
T KOG2120|consen  254 LLLSSCSRLDELNLSWCFLFT  274 (419)
T ss_pred             HHHHhhhhHhhcCchHhhccc
Confidence            455678889999999986544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.48  E-value=3e-09  Score=96.33  Aligned_cols=88  Identities=15%  Similarity=0.108  Sum_probs=53.8

Q ss_pred             cccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCcc
Q 016694          250 TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF  329 (384)
Q Consensus       250 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~l  329 (384)
                      -++.+++|++|++++ +.++.+-..       .+.....++.|.+.. .+++.+... .+.++..|+.|.++++ +++.+
T Consensus       269 cf~~L~~L~~lnlsn-N~i~~i~~~-------aFe~~a~l~eL~L~~-N~l~~v~~~-~f~~ls~L~tL~L~~N-~it~~  337 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSN-NKITRIEDG-------AFEGAAELQELYLTR-NKLEFVSSG-MFQGLSGLKTLSLYDN-QITTV  337 (498)
T ss_pred             HHhhcccceEeccCC-Cccchhhhh-------hhcchhhhhhhhcCc-chHHHHHHH-hhhccccceeeeecCC-eeEEE
Confidence            356777888888876 445544221       222255666666655 355555433 2556778888888886 45544


Q ss_pred             -CCCCcCCCCCeeeccCCCC
Q 016694          330 -SQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       330 -p~~~~~~~~L~~l~i~~~~  348 (384)
                       |..+..+.+|..+.+-.|+
T Consensus       338 ~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  338 APGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             ecccccccceeeeeehccCc
Confidence             4445667788888877763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=4e-08  Score=90.25  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=86.2

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCccc-CchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSA-IPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      .+.+|+++.+.++ .++....  -+....|++++.|+|+++ -+... +-..++.+||+|+.|+++.| .+....+..-.
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~--~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~  193 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGI--EEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTT  193 (505)
T ss_pred             hHHhhhheeecCc-cccccch--hhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccch
Confidence            3567888888888 4554311  023467999999999997 44443 33457889999999999999 55433222210


Q ss_pred             cccccccCCcccccceeccCcccc-ccccccCcccccCCCCceeEeeccCCCcccc--c---CCCeeEEEecCCC
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPK-LKRFCNFTENIIEMPELRYLAIENCPDMETF--I---SNSVVHVTTDNKE  150 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--~---~~~L~~L~i~~~~  150 (384)
                              ..+++|+.|.+++|.. ..++   .+....||+|+.|++.....+...  +   +..|+.|+++++.
T Consensus       194 --------~~l~~lK~L~l~~CGls~k~V---~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  194 --------LLLSHLKQLVLNSCGLSWKDV---QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             --------hhhhhhheEEeccCCCCHHHH---HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence                    1678999999999972 2333   336677999999999887433211  1   2335555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.42  E-value=1.2e-08  Score=100.18  Aligned_cols=97  Identities=19%  Similarity=0.187  Sum_probs=54.3

Q ss_pred             CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecc-cCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC-DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF  109 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  109 (384)
                      .+++|+.+.+.+|..++......++..+++|++|++++| ......+  ........    .+++|+.|++..+..+++.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~----~~~~L~~l~l~~~~~isd~  259 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP--LLLLLLLS----ICRKLKSLDLSGCGLVTDI  259 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch--hHhhhhhh----hcCCcCccchhhhhccCch
Confidence            367777777777777666443444567777888877763 1111111  00011111    5567777777777655444


Q ss_pred             ccCcccccCCCCceeEeeccCCCcc
Q 016694          110 CNFTENIIEMPELRYLAIENCPDME  134 (384)
Q Consensus       110 ~~~~~~~~~~~~L~~L~l~~c~~l~  134 (384)
                      .. ......+++|+.|.+..|..++
T Consensus       260 ~l-~~l~~~c~~L~~L~l~~c~~lt  283 (482)
T KOG1947|consen  260 GL-SALASRCPNLETLSLSNCSNLT  283 (482)
T ss_pred             hH-HHHHhhCCCcceEccCCCCccc
Confidence            32 1122336777777777776554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.40  E-value=2.3e-07  Score=77.32  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=36.5

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCC-CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      +..++++|++.++ .+..|     +.++ .+.+|+.|++++| .++.+..   +..+++|++|++++| .++++.+....
T Consensus        17 n~~~~~~L~L~~n-~I~~I-----e~L~~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i~~~l~~   85 (175)
T PF14580_consen   17 NPVKLRELNLRGN-QISTI-----ENLGATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSISEGLDK   85 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CHHHHH
T ss_pred             ccccccccccccc-ccccc-----cchhhhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCccccchHH
Confidence            3456788888888 67664     2244 5788899999988 6676643   357788999999988 78776432211


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCC
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD  132 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~  132 (384)
                               .+|+|++|++.++. +.++.. -.....+|+|+.|++.++|-
T Consensus        86 ---------~lp~L~~L~L~~N~-I~~l~~-l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   86 ---------NLPNLQELYLSNNK-ISDLNE-LEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             ---------H-TT--EEE-TTS----SCCC-CGGGGG-TT--EEE-TT-GG
T ss_pred             ---------hCCcCCEEECcCCc-CCChHH-hHHHHcCCCcceeeccCCcc
Confidence                     57889999888775 555443 23456688888888887653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=5e-08  Score=85.51  Aligned_cols=203  Identities=19%  Similarity=0.133  Sum_probs=119.3

Q ss_pred             CCceEecCCCcCccee-cccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            6 DIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i-~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      .|++|+++.. .++.. -.+   -+..|+.|+.|.+.+. .+.+-.-.. +..-.+|+.|+++.|.++++.....    .
T Consensus       186 Rlq~lDLS~s-~it~stl~~---iLs~C~kLk~lSlEg~-~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~l----l  255 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHG---ILSQCSKLKNLSLEGL-RLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQL----L  255 (419)
T ss_pred             hhHHhhcchh-heeHHHHHH---HHHHHHhhhhcccccc-ccCcHHHHH-HhccccceeeccccccccchhHHHH----H
Confidence            4777787765 34321 011   1356778888888886 444432333 3355788888888887776442211    1


Q ss_pred             ccccCCcccccceeccCccccccccccCcccc-cCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENI-IEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                      ++    .+..|.+|+++.|...++...  ..+ .--++|+.|++++|.+.-...                          
T Consensus       256 ~~----scs~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrnl~~s--------------------------  303 (419)
T KOG2120|consen  256 LS----SCSRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRNLQKS--------------------------  303 (419)
T ss_pred             HH----hhhhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhhhhhh--------------------------
Confidence            22    567788888887764433311  111 124578888888885532110                          


Q ss_pred             CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccc-ccCCcccCCCcCEEEeecCCCC
Q 016694          164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK-LVTPSWHLENLATLEVSKCHGL  242 (384)
Q Consensus       164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l  242 (384)
                       .+..+..   .+|+|..||++.+..++.=   -+.....++.|++|.++.|..+.. --..+.+.|.|.+|++.+|-.-
T Consensus       304 -h~~tL~~---rcp~l~~LDLSD~v~l~~~---~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  304 -HLSTLVR---RCPNLVHLDLSDSVMLKND---CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             -HHHHHHH---hCCceeeeccccccccCch---HHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence             1111222   6888999999888666541   111235678899999998876541 1134577889999999998533


Q ss_pred             eeecccccccccCcccE
Q 016694          243 INVLTLSTSESLVNLGR  259 (384)
Q Consensus       243 ~~l~~~~~~~~l~~L~~  259 (384)
                      +..  ......+|+|+.
T Consensus       377 t~m--el~~e~~~~lki  391 (419)
T KOG2120|consen  377 TTM--ELLKEMLSHLKI  391 (419)
T ss_pred             hHH--HHHHHhCccccc
Confidence            322  223345666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.18  E-value=1.8e-06  Score=71.97  Aligned_cols=110  Identities=22%  Similarity=0.273  Sum_probs=50.5

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+.+|+.|++++| .+..+     +.+..+++|+.|++++| +++++.. .+...+++|++|.+++| .+.++....   
T Consensus        40 ~l~~L~~L~Ls~N-~I~~l-----~~l~~L~~L~~L~L~~N-~I~~i~~-~l~~~lp~L~~L~L~~N-~I~~l~~l~---  107 (175)
T PF14580_consen   40 TLDKLEVLDLSNN-QITKL-----EGLPGLPRLKTLDLSNN-RISSISE-GLDKNLPNLQELYLSNN-KISDLNELE---  107 (175)
T ss_dssp             T-TT--EEE-TTS---S-------TT----TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS----SCCCCG---
T ss_pred             hhcCCCEEECCCC-CCccc-----cCccChhhhhhcccCCC-CCCcccc-chHHhCCcCCEEECcCC-cCCChHHhH---
Confidence            3678999999999 78875     23668999999999998 7777743 23357899999999999 887664322   


Q ss_pred             ccccccCCcccccceeccCccccccccccCc-ccccCCCCceeEeeccC
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMPELRYLAIENC  130 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c  130 (384)
                       .+.    .+++|++|++.+++ ++.-+.+. ..+..+|+|+.||-...
T Consensus       108 -~L~----~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  108 -PLS----SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -GGG----G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             -HHH----cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence             223    78999999999998 33332211 13445888888875543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.17  E-value=8.9e-06  Score=76.18  Aligned_cols=59  Identities=20%  Similarity=0.260  Sum_probs=32.9

Q ss_pred             cCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCee
Q 016694          176 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN  244 (384)
Q Consensus       176 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~  244 (384)
                      +.+++.|++++| .++.++.       ..++|++|.+++|..++.+|..+  .++|+.|.+++|..+..
T Consensus        51 ~~~l~~L~Is~c-~L~sLP~-------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLPV-------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG  109 (426)
T ss_pred             hcCCCEEEeCCC-CCcccCC-------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc
Confidence            455666666666 5555431       12356666666666666555432  24566666666654443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.16  E-value=1.7e-05  Score=74.32  Aligned_cols=138  Identities=20%  Similarity=0.278  Sum_probs=71.8

Q ss_pred             cCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccc
Q 016694           57 CLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF  136 (384)
Q Consensus        57 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  136 (384)
                      .++++..|++++| .++.+|.             .-++|++|.+.+|..++.+|.   .+  .++|++|++.+|..+..+
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~-------------LP~sLtsL~Lsnc~nLtsLP~---~L--P~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPV-------------LPNELTEITIENCNNLTTLPG---SI--PEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCC-------------CCCCCcEEEccCCCCcccCCc---hh--hhhhhheEccCccccccc
Confidence            4677777777777 6666651             223577777777777666654   11  346777777777666554


Q ss_pred             cCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCc
Q 016694          137 ISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS  216 (384)
Q Consensus       137 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~  216 (384)
                      | .+|+.|.+.+..            |..+..+      .++|+.|.+..+........   + ...+++|++|.+.+|.
T Consensus       111 P-~sLe~L~L~~n~------------~~~L~~L------PssLk~L~I~~~n~~~~~~l---p-~~LPsSLk~L~Is~c~  167 (426)
T PRK15386        111 P-ESVRSLEIKGSA------------TDSIKNV------PNGLTSLSINSYNPENQARI---D-NLISPSLKTLSLTGCS  167 (426)
T ss_pred             c-cccceEEeCCCC------------CcccccC------cchHhheecccccccccccc---c-cccCCcccEEEecCCC
Confidence            3 345556554322            1112211      23566666543211110000   0 1223567777777766


Q ss_pred             ccccccCCcccCCCcCEEEeecC
Q 016694          217 KLQKLVTPSWHLENLATLEVSKC  239 (384)
Q Consensus       217 ~l~~l~~~~~~~~~L~~L~l~~c  239 (384)
                      .+. +|..+.  .+|+.|.++.+
T Consensus       168 ~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        168 NII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             ccc-Cccccc--ccCcEEEeccc
Confidence            442 222211  46777776653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.15  E-value=3.6e-06  Score=57.36  Aligned_cols=58  Identities=31%  Similarity=0.421  Sum_probs=39.5

Q ss_pred             CCCceEecCCCcCcceecccCC-CCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQA-LPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC   69 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p-~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~   69 (384)
                      |+|++|+++++ .+..+    | ..+..+++|++|++++| +++.+++. .+.++++|++|++++|
T Consensus         1 p~L~~L~l~~n-~l~~i----~~~~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEI----PPDSFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEE----CTTTTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCcc----CHHHHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCC
Confidence            46777777777 66665    3 34566777777777766 66666443 3567777777777776

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.15  E-value=5.2e-08  Score=88.44  Aligned_cols=234  Identities=16%  Similarity=0.148  Sum_probs=124.8

Q ss_pred             CCceEecCCCcCcceecccCCC-CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQAL-PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~-~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      .-..+++..+ .|..|    |+ +++.+++||.|+|++| ++..+.|.+ ++++++|-+|-+.++++|++++...+.   
T Consensus        68 ~tveirLdqN-~I~~i----P~~aF~~l~~LRrLdLS~N-~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~---  137 (498)
T KOG4237|consen   68 ETVEIRLDQN-QISSI----PPGAFKTLHRLRRLDLSKN-NISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGAFG---  137 (498)
T ss_pred             cceEEEeccC-CcccC----Chhhccchhhhceeccccc-chhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhHhh---
Confidence            3456888888 78877    54 5678999999999998 888886665 568999999988885599988876644   


Q ss_pred             ccccCCcccccceeccCcccc-----------------------ccccccCcccccCCCCceeEeeccCCCc--------
Q 016694           85 KEHIGPLFPKLFELTLMDLPK-----------------------LKRFCNFTENIIEMPELRYLAIENCPDM--------  133 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~-----------------------l~~~~~~~~~~~~~~~L~~L~l~~c~~l--------  133 (384)
                            .+.+|+.|.+.-+.-                       ...++.  .....+..++.+.+...+.+        
T Consensus       138 ------gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~--~tf~~l~~i~tlhlA~np~icdCnL~wl  209 (498)
T KOG4237|consen  138 ------GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK--GTFQGLAAIKTLHLAQNPFICDCNLPWL  209 (498)
T ss_pred             ------hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc--ccccchhccchHhhhcCccccccccchh
Confidence                  333444433322210                       111111  11222333333333322211        


Q ss_pred             ccc----cC--CC--------eeEEEecCCCCcccc-ccccc-----cccCCcccccC-CccccCCccEEeccccccccc
Q 016694          134 ETF----IS--NS--------VVHVTTDNKEPEKLT-SEENF-----FLTDQIQPLFD-EKVAFPQLRYLELSRLHKVQH  192 (384)
Q Consensus       134 ~~~----~~--~~--------L~~L~i~~~~~~~~~-~~~~~-----~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~  192 (384)
                      +++    |.  +.        +..-++...+...+. +...+     ..|......+. .++++++|++|+++++ .++.
T Consensus       210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~  288 (498)
T KOG4237|consen  210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITR  288 (498)
T ss_pred             hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccch
Confidence            100    00  00        000000000000000 00000     00100000000 0337899999999887 5666


Q ss_pred             ccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecc
Q 016694          193 LWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD  264 (384)
Q Consensus       193 l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~  264 (384)
                      +....|   ...+++++|.+..+ ++..+.. .+..+..|+.|++.+. +++.+. +..+..+..|.+|.+-.
T Consensus       289 i~~~aF---e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~-~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  289 IEDGAF---EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVA-PGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             hhhhhh---cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEe-cccccccceeeeeehcc
Confidence            544333   45677888888774 4555432 3456778888999885 466553 33456677778887754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.09  E-value=4.2e-06  Score=57.00  Aligned_cols=60  Identities=23%  Similarity=0.210  Sum_probs=43.7

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccc
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  104 (384)
                      ++|++|++++| +++.+++. .+.++++|++|++++| .+..+++..+.         .+++|++|+++++.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~-~f~~l~~L~~L~l~~N-~l~~i~~~~f~---------~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPD-SFSNLPNLETLDLSNN-NLTSIPPDAFS---------NLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTT-TTTTGTTESEEEETSS-SESEEETTTTT---------TSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHH-HHcCCCCCCEeEccCC-ccCccCHHHHc---------CCCCCCEEeCcCCc
Confidence            46888888887 77777544 3567888888888877 77777665543         67788888877664

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.99  E-value=3.5e-07  Score=89.71  Aligned_cols=121  Identities=19%  Similarity=0.210  Sum_probs=80.9

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecC-CCCcccC--chhHHhcCCCCCEEEEecccCcceecccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDC-TNMLSAI--PANLIRCLNNLRWLEVRNCDSLEEVLHLE   79 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   79 (384)
                      .++.|+.|.+.++..+...+..  +....+++|+.|++++| ......+  .......+++|+.|++++|..+.+..   
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~---  260 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLD--ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG---  260 (482)
T ss_pred             hCchhhHhhhcccccCChhhHH--HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh---
Confidence            3678899999988777653211  22357899999999983 3333222  22345678999999999995444331   


Q ss_pred             cccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcc
Q 016694           80 ELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME  134 (384)
Q Consensus        80 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~  134 (384)
                       ......    .+++|++|.+.+|..+++-.. ......+++|++|+++.|..++
T Consensus       261 -l~~l~~----~c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  261 -LSALAS----RCPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             -HHHHHh----hCCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCccch
Confidence             111112    588999999888886544332 2355678999999999998774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.86  E-value=1.2e-05  Score=76.82  Aligned_cols=175  Identities=23%  Similarity=0.284  Sum_probs=101.0

Q ss_pred             CCCCCCCccEEEeecCCCCcccCchhHHhcCC-CCCEEEEecccCcceecccccccccccccCCcccccceeccCccccc
Q 016694           28 PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKL  106 (384)
Q Consensus        28 ~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  106 (384)
                      .+..+++++.|++.++ +++++++.  ..... +|++|+++++ .+..++....          .++.|+.|+++++. +
T Consensus       111 ~~~~~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~N-~i~~l~~~~~----------~l~~L~~L~l~~N~-l  175 (394)
T COG4886         111 ELLELTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSDN-KIESLPSPLR----------NLPNLKNLDLSFND-L  175 (394)
T ss_pred             hhhcccceeEEecCCc-ccccCccc--cccchhhccccccccc-chhhhhhhhh----------ccccccccccCCch-h
Confidence            3456678888888887 77777665  33443 8999999998 7777742221          78889999998887 6


Q ss_pred             cccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccc
Q 016694          107 KRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR  186 (384)
Q Consensus       107 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~  186 (384)
                      .+++.   .....++|+.|++++. .++.+|..                                 .+...+|+++.+.+
T Consensus       176 ~~l~~---~~~~~~~L~~L~ls~N-~i~~l~~~---------------------------------~~~~~~L~~l~~~~  218 (394)
T COG4886         176 SDLPK---LLSNLSNLNNLDLSGN-KISDLPPE---------------------------------IELLSALEELDLSN  218 (394)
T ss_pred             hhhhh---hhhhhhhhhheeccCC-ccccCchh---------------------------------hhhhhhhhhhhhcC
Confidence            67765   3336778888888874 44433311                                 01233355555555


Q ss_pred             ccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecc
Q 016694          187 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD  264 (384)
Q Consensus       187 ~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~  264 (384)
                      ....+.+..     ...+.++..+.+.+. .+..++..+..+++++.|+++++. +.++..   ...+.+|+.|++++
T Consensus       219 N~~~~~~~~-----~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~---~~~~~~l~~L~~s~  286 (394)
T COG4886         219 NSIIELLSS-----LSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQ-ISSISS---LGSLTNLRELDLSG  286 (394)
T ss_pred             Ccceecchh-----hhhcccccccccCCc-eeeeccchhccccccceecccccc-cccccc---ccccCccCEEeccC
Confidence            421221100     133444444443332 233334445555666666666642 444421   44556666666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.76  E-value=2.6e-05  Score=74.59  Aligned_cols=190  Identities=23%  Similarity=0.253  Sum_probs=119.9

Q ss_pred             EEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcc-cccceeccCccccccccccCccc
Q 016694           37 HLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF-PKLFELTLMDLPKLKRFCNFTEN  115 (384)
Q Consensus        37 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~  115 (384)
                      .+++..+........   +..++.+..|++.++ .+.++++...          .. ++|++|++.+.. ++.++.   .
T Consensus        97 ~l~~~~~~~~~~~~~---~~~~~~l~~L~l~~n-~i~~i~~~~~----------~~~~nL~~L~l~~N~-i~~l~~---~  158 (394)
T COG4886          97 SLDLNLNRLRSNISE---LLELTNLTSLDLDNN-NITDIPPLIG----------LLKSNLKELDLSDNK-IESLPS---P  158 (394)
T ss_pred             eeeccccccccCchh---hhcccceeEEecCCc-ccccCccccc----------cchhhcccccccccc-hhhhhh---h
Confidence            466666532122222   346678999999988 7888877663          34 279999998876 665643   4


Q ss_pred             ccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccc
Q 016694          116 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK  195 (384)
Q Consensus       116 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~  195 (384)
                      +..+++|+.|++..++ ++++                                 ....+..++|+.|+++++ .+..++.
T Consensus       159 ~~~l~~L~~L~l~~N~-l~~l---------------------------------~~~~~~~~~L~~L~ls~N-~i~~l~~  203 (394)
T COG4886         159 LRNLPNLKNLDLSFND-LSDL---------------------------------PKLLSNLSNLNNLDLSGN-KISDLPP  203 (394)
T ss_pred             hhccccccccccCCch-hhhh---------------------------------hhhhhhhhhhhheeccCC-ccccCch
Confidence            5778899999988863 3222                                 111224678888888887 5555433


Q ss_pred             cccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccc
Q 016694          196 ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ  275 (384)
Q Consensus       196 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  275 (384)
                      .    ...+.+|++|.+.+.+ ....+..+..+.++..+.+.+. .+..+  +.....++++++|++.+ +.+.++..  
T Consensus       204 ~----~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~--~~~~~~l~~l~~L~~s~-n~i~~i~~--  272 (394)
T COG4886         204 E----IELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDL--PESIGNLSNLETLDLSN-NQISSISS--  272 (394)
T ss_pred             h----hhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeec--cchhccccccceecccc-cccccccc--
Confidence            2    1245568888888754 3344455666777777775543 34332  44556778899999987 44554432  


Q ss_pred             cCccccceeeecccceeecccC
Q 016694          276 VGEEAKGCVVFEELGYLGLDCL  297 (384)
Q Consensus       276 ~~~~~~~~~~~~~L~~L~l~~c  297 (384)
                             .....+++.|++++.
T Consensus       273 -------~~~~~~l~~L~~s~n  287 (394)
T COG4886         273 -------LGSLTNLRELDLSGN  287 (394)
T ss_pred             -------ccccCccCEEeccCc
Confidence                   123678888888764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=1.5e-05  Score=70.30  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=69.9

Q ss_pred             ccCCccEEecccccccccccccccccccccccccEEeeccCcccccc--cCCcccCCCcCEEEeecCCCCeeeccccccc
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL--VTPSWHLENLATLEVSKCHGLINVLTLSTSE  252 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~  252 (384)
                      .+|.+++|.++.+ ++..+-.+.--....-+.+++|++..|......  -.-...||++..+.+..|+ +++...+..+.
T Consensus       144 ~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se  221 (418)
T KOG2982|consen  144 DLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSE  221 (418)
T ss_pred             cchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCC
Confidence            5777788877765 333322221111123346777777777643321  1123467888888888876 66665556666


Q ss_pred             ccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCcee
Q 016694          253 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSF  303 (384)
Q Consensus       253 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  303 (384)
                      .+|.+..|.++. .++.+|-..      .....||.|..|.+.+.|-...+
T Consensus       222 ~~p~~~~LnL~~-~~idswasv------D~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  222 PFPSLSCLNLGA-NNIDSWASV------DALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             CCCcchhhhhcc-cccccHHHH------HHHcCCchhheeeccCCcccccc
Confidence            777777777776 456655432      12223788888887776655444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.63  E-value=3.2e-06  Score=80.53  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=87.0

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      .|+.+.+.++ .+..+    |.+++.+..|.+++++.+ ++..+|+.  +..|+ |+.|-++++ +++.+|.+.+     
T Consensus        99 ~Le~liLy~n-~~r~i----p~~i~~L~~lt~l~ls~N-qlS~lp~~--lC~lp-Lkvli~sNN-kl~~lp~~ig-----  163 (722)
T KOG0532|consen   99 SLESLILYHN-CIRTI----PEAICNLEALTFLDLSSN-QLSHLPDG--LCDLP-LKVLIVSNN-KLTSLPEEIG-----  163 (722)
T ss_pred             HHHHHHHHhc-cceec----chhhhhhhHHHHhhhccc-hhhcCChh--hhcCc-ceeEEEecC-ccccCCcccc-----
Confidence            3444555554 34445    777788888888888887 55655443  33444 888888888 7887776664     


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccC----CCeeEEEecCCCCcccccccccc
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS----NSVVHVTTDNKEPEKLTSEENFF  161 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~L~~L~i~~~~~~~~~~~~~~~  161 (384)
                           ..+.|.+|+++.|. +..++.   ..+.+.+|+.|++++. .+..+|.    -.|.+|+++.++           
T Consensus       164 -----~~~tl~~ld~s~ne-i~slps---ql~~l~slr~l~vrRn-~l~~lp~El~~LpLi~lDfScNk-----------  222 (722)
T KOG0532|consen  164 -----LLPTLAHLDVSKNE-IQSLPS---QLGYLTSLRDLNVRRN-HLEDLPEELCSLPLIRLDFSCNK-----------  222 (722)
T ss_pred             -----cchhHHHhhhhhhh-hhhchH---HhhhHHHHHHHHHhhh-hhhhCCHHHhCCceeeeecccCc-----------
Confidence                 56677888888776 556665   5667777777877773 3333431    124555555333           


Q ss_pred             ccCCcccccCCccccCCccEEecccc
Q 016694          162 LTDQIQPLFDEKVAFPQLRYLELSRL  187 (384)
Q Consensus       162 ~~~~l~~l~~~~~~~~~L~~L~l~~~  187 (384)
                          +..++-.+-++.+|++|-|.++
T Consensus       223 ----is~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  223 ----ISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             ----eeecchhhhhhhhheeeeeccC
Confidence                2222222235666666666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.59  E-value=3.1e-05  Score=78.43  Aligned_cols=108  Identities=17%  Similarity=0.321  Sum_probs=56.4

Q ss_pred             CCCceEecCCCcCcceecccCCCCCC-CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      .+|++|++++......-|...   ++ .||+|++|.+.+- .+...-...+..++|+|..||++++ +++.+.+..    
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~k---ig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS----  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKK---IGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLSGIS----  192 (699)
T ss_pred             HhhhhcCccccchhhccHHHH---HhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcHHHh----
Confidence            356667776654443334322   33 3577777777663 2221112334556777777777777 666553333    


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                             .+++|+.|.+.+.. .+.... ...+..+++|+.|||++-
T Consensus       193 -------~LknLq~L~mrnLe-~e~~~~-l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  193 -------RLKNLQVLSMRNLE-FESYQD-LIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             -------ccccHHHHhccCCC-CCchhh-HHHHhcccCCCeeecccc
Confidence                   45566666555544 222111 123445667777777664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.58  E-value=2.2e-06  Score=81.55  Aligned_cols=65  Identities=26%  Similarity=0.316  Sum_probs=37.2

Q ss_pred             ccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694          169 LFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       169 l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  240 (384)
                      +....+.+.+|+.|.+..+ ++.+++.+     ...=.|..|+++ |+++..+|..+..+..|++|.+.+++
T Consensus       181 lpsql~~l~slr~l~vrRn-~l~~lp~E-----l~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  181 LPSQLGYLTSLRDLNVRRN-HLEDLPEE-----LCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             chHHhhhHHHHHHHHHhhh-hhhhCCHH-----HhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCC
Confidence            3333445556666666554 34443332     112346666666 45677777777777777777777655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.55  E-value=2.5e-05  Score=68.98  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=19.2

Q ss_pred             CCCCccEEEeecCCCCc-------ccCchhHHhcCCCCCEEEEecc
Q 016694           31 FFNNLRHLVVDDCTNML-------SAIPANLIRCLNNLRWLEVRNC   69 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~-------~~~~~~~~~~l~~L~~L~l~~~   69 (384)
                      .+..|++|.++..+.--       ...+.. ..-+++|+.+.++.|
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~-l~~f~~l~~~~~s~~  224 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFN-LNAFRNLKTLKFSAL  224 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccc-hHHhhhhheeeeecc
Confidence            45667777776543110       111111 123467777777777

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.49  E-value=8.2e-06  Score=73.33  Aligned_cols=13  Identities=23%  Similarity=0.284  Sum_probs=7.9

Q ss_pred             CCCccEEEeccCC
Q 016694          312 FPSLEHVVVRQCP  324 (384)
Q Consensus       312 ~~~L~~L~l~~c~  324 (384)
                      .|.|++|++++|.
T Consensus       297 k~dL~kLnLngN~  309 (382)
T KOG1909|consen  297 KPDLEKLNLNGNR  309 (382)
T ss_pred             chhhHHhcCCccc
Confidence            5666666666653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.49  E-value=9.1e-05  Score=46.52  Aligned_cols=38  Identities=24%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCccee
Q 016694           34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV   75 (384)
Q Consensus        34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   75 (384)
                      +|++|++++| +++++++.  +++|++|++|++++| .++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBE
T ss_pred             cceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCC
Confidence            4556666655 55555431  345666666666666 45544

...

>PLN03150 hypothetical protein; Provisional

Probab=97.49  E-value=0.00018  Score=72.82  Aligned_cols=82  Identities=17%  Similarity=0.149  Sum_probs=45.4

Q ss_pred             ccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcc
Q 016694           35 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE  114 (384)
Q Consensus        35 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  114 (384)
                      ++.|+|+++ .+.+..|.. ++.+++|+.|++++| .+.+..+....         .+++|+.|+++++..-..+|.   
T Consensus       420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~---------~l~~L~~LdLs~N~lsg~iP~---  484 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLG---------SITSLEVLDLSYNSFNGSIPE---  484 (623)
T ss_pred             EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHh---------CCCCCCEEECCCCCCCCCCch---
Confidence            556666665 444443443 446666666666666 45433232211         556666666666653334444   


Q ss_pred             cccCCCCceeEeeccCC
Q 016694          115 NIIEMPELRYLAIENCP  131 (384)
Q Consensus       115 ~~~~~~~L~~L~l~~c~  131 (384)
                      .+..+++|+.|+++++.
T Consensus       485 ~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        485 SLGQLTSLRILNLNGNS  501 (623)
T ss_pred             HHhcCCCCCEEECcCCc
Confidence            45566666666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.48  E-value=0.00016  Score=45.40  Aligned_cols=41  Identities=17%  Similarity=0.329  Sum_probs=29.8

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIP   51 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~   51 (384)
                      ++|++|+++++ .++++    |+.++.+++|++|++++| +++++++
T Consensus         1 ~~L~~L~l~~N-~i~~l----~~~l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDL----PPELSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             TT-SEEEETSS-S-SSH----GGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred             CcceEEEccCC-CCccc----CchHhCCCCCCEEEecCC-CCCCCcC
Confidence            47888888888 67776    655788888888888888 6666543

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.28  E-value=4.6e-05  Score=67.34  Aligned_cols=56  Identities=23%  Similarity=0.353  Sum_probs=39.7

Q ss_pred             CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           59 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        59 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                      +.|+++|+++| .++.+....      +    ..|+++.|+++.+. +..+.    +...+++|+.|++++.
T Consensus       284 q~LtelDLS~N-~I~~iDESv------K----L~Pkir~L~lS~N~-i~~v~----nLa~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  284 QELTELDLSGN-LITQIDESV------K----LAPKLRRLILSQNR-IRTVQ----NLAELPQLQLLDLSGN  339 (490)
T ss_pred             hhhhhcccccc-chhhhhhhh------h----hccceeEEeccccc-eeeeh----hhhhcccceEeecccc
Confidence            66888899888 676653222      2    67889999988876 44343    3566888889988874

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.24  E-value=0.0001  Score=74.63  Aligned_cols=36  Identities=25%  Similarity=0.316  Sum_probs=17.3

Q ss_pred             CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecc
Q 016694           34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC   69 (384)
Q Consensus        34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~   69 (384)
                      +|++|++++-..+..--+..+...||.|+.|.+.|-
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~  158 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR  158 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCc
Confidence            555555555443333323333334555555555553

>PLN03150 hypothetical protein; Provisional

Probab=97.09  E-value=0.00078  Score=68.23  Aligned_cols=111  Identities=14%  Similarity=0.062  Sum_probs=80.9

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      .++.|+++++.-...+    |..++.+++|+.|+|++| ++.+..|.. ++.+++|+.|++++| .+....+....    
T Consensus       419 ~v~~L~L~~n~L~g~i----p~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~l~----  487 (623)
T PLN03150        419 FIDGLGLDNQGLRGFI----PNDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPESLG----  487 (623)
T ss_pred             EEEEEECCCCCccccC----CHHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCC-CCCCCCchHHh----
Confidence            3778899988433344    777899999999999998 666554544 579999999999999 77755454432    


Q ss_pred             cccCCcccccceeccCccccccccccCcccccC-CCCceeEeeccCCCccc
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE-MPELRYLAIENCPDMET  135 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~  135 (384)
                           .+++|++|+++++..-..+|.   .+.. ..++..+++.+++.+-.
T Consensus       488 -----~L~~L~~L~Ls~N~l~g~iP~---~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        488 -----QLTSLRILNLNGNSLSGRVPA---ALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             -----cCCCCCEEECcCCcccccCCh---HHhhccccCceEEecCCccccC
Confidence                 788999999999875556665   2222 34667788887665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.07  E-value=9.3e-06  Score=79.54  Aligned_cols=19  Identities=26%  Similarity=0.529  Sum_probs=14.7

Q ss_pred             CCCCCCCCCccEEEeecCC
Q 016694           26 ALPVSFFNNLRHLVVDDCT   44 (384)
Q Consensus        26 p~~i~~l~~L~~L~l~~c~   44 (384)
                      |-+|..|.+||+|.+++|+
T Consensus       102 pi~ifpF~sLr~LElrg~~  120 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCD  120 (1096)
T ss_pred             CceeccccceeeEEecCcc
Confidence            4456778888888888884

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.86  E-value=3.3e-05  Score=69.57  Aligned_cols=228  Identities=14%  Similarity=0.101  Sum_probs=120.2

Q ss_pred             CCCCCceEecCCCcCcceecccCCC-------CCCCCCCccEEEeecCCCCcccCc---hhHHhcCCCCCEEEEecccCc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQAL-------PVSFFNNLRHLVVDDCTNMLSAIP---ANLIRCLNNLRWLEVRNCDSL   72 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~-------~i~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l   72 (384)
                      +.++|+..+++++ .....-...|+       .+-.++.|++|+|++| .+....+   ..++.++..|++|.+.+| ++
T Consensus        56 ~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~-Gl  132 (382)
T KOG1909|consen   56 SKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNC-GL  132 (382)
T ss_pred             hcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcC-CC
Confidence            3456777777776 33221111132       2345668888888887 4443222   224667888999999888 66


Q ss_pred             ceeccccccc-----ccccccCCcccccceeccCcccccccccc--CcccccCCCCceeEeeccCCCcccccCCCeeEEE
Q 016694           73 EEVLHLEELN-----ADKEHIGPLFPKLFELTLMDLPKLKRFCN--FTENIIEMPELRYLAIENCPDMETFISNSVVHVT  145 (384)
Q Consensus        73 ~~~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~  145 (384)
                      ....+...+.     ...+ .-..-++|+.+...++. +...+.  ........+.|+.+.+........          
T Consensus       133 g~~ag~~l~~al~~l~~~k-k~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~e----------  200 (382)
T KOG1909|consen  133 GPEAGGRLGRALFELAVNK-KAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPE----------  200 (382)
T ss_pred             ChhHHHHHHHHHHHHHHHh-ccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCc----------
Confidence            4322211000     0000 00134678888887765 443322  011233457788887766421110          


Q ss_pred             ecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccc-cccccccccEEeeccCccccc----
Q 016694          146 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQK----  220 (384)
Q Consensus       146 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~~~~l~~----  220 (384)
                                         +..-++..+..+++|+.|||..+.--..- ...+. ....+++|++|++++|..-+.    
T Consensus       201 -------------------G~~al~eal~~~~~LevLdl~DNtft~eg-s~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  201 -------------------GVTALAEALEHCPHLEVLDLRDNTFTLEG-SVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             -------------------hhHHHHHHHHhCCcceeeecccchhhhHH-HHHHHHHhcccchheeecccccccccccHHH
Confidence                               11112222337889999999876321110 00000 125677899999999853221    


Q ss_pred             ccCC-cccCCCcCEEEeecCCCCeeecc---cccccccCcccEEeecccc
Q 016694          221 LVTP-SWHLENLATLEVSKCHGLINVLT---LSTSESLVNLGRMKIADCK  266 (384)
Q Consensus       221 l~~~-~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~  266 (384)
                      +... -...|+|+++.+.+|. ++.-..   .......|.|++|.+.+|.
T Consensus       261 ~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            1111 1357889999988874 332110   0111236888999998864

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.54  E-value=0.0058  Score=51.32  Aligned_cols=89  Identities=27%  Similarity=0.379  Sum_probs=50.6

Q ss_pred             CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694           29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR  108 (384)
Q Consensus        29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  108 (384)
                      +..++.|.+|.+++| +++.+.|. +..-+++|+.|.+.+| ++.++.+...    +.    .+|+|++|.+-+++ .++
T Consensus        60 lp~l~rL~tLll~nN-rIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~p----La----~~p~L~~Ltll~Np-v~~  127 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNN-RITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDP----LA----SCPKLEYLTLLGNP-VEH  127 (233)
T ss_pred             CCCccccceEEecCC-cceeeccc-hhhhccccceEEecCc-chhhhhhcch----hc----cCCccceeeecCCc-hhc
Confidence            345667777777776 66666433 3345577777777777 5555433221    22    66777777776665 333


Q ss_pred             cccCc-ccccCCCCceeEeecc
Q 016694          109 FCNFT-ENIIEMPELRYLAIEN  129 (384)
Q Consensus       109 ~~~~~-~~~~~~~~L~~L~l~~  129 (384)
                      -..+. --+..+|+|+.|++..
T Consensus       128 k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  128 KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ccCceeEEEEecCcceEeehhh
Confidence            22211 1234567777777655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.002  Score=57.17  Aligned_cols=20  Identities=30%  Similarity=0.507  Sum_probs=12.6

Q ss_pred             cccccccEEeeccCcccccc
Q 016694          202 KAFANLIRLKISECSKLQKL  221 (384)
Q Consensus       202 ~~~~~L~~L~l~~~~~l~~l  221 (384)
                      ..+++|..|++...|....+
T Consensus       246 n~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  246 NGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             cCCchhheeeccCCcccccc
Confidence            45667777777766655544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.00011  Score=64.30  Aligned_cols=104  Identities=22%  Similarity=0.222  Sum_probs=67.9

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +.+.+.|++.+| .+.+|..     ...|+.|++|.|+-| +++.+.|.   .+|++|++|.+..| .|.++....+.  
T Consensus        18 l~~vkKLNcwg~-~L~DIsi-----c~kMp~lEVLsLSvN-kIssL~pl---~rCtrLkElYLRkN-~I~sldEL~YL--   84 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISI-----CEKMPLLEVLSLSVN-KISSLAPL---QRCTRLKELYLRKN-CIESLDELEYL--   84 (388)
T ss_pred             HHHhhhhcccCC-CccHHHH-----HHhcccceeEEeecc-ccccchhH---HHHHHHHHHHHHhc-ccccHHHHHHH--
Confidence            345667777777 5665422     246888999999877 66766554   68899999999888 77776544443  


Q ss_pred             cccccCCcccccceeccCcccccccccc-Cc-ccccCCCCceeEe
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCN-FT-ENIIEMPELRYLA  126 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-~~~~~~~~L~~L~  126 (384)
                        .    .+|+|+.|.+..++....-+. +. .-+..+|+|++|+
T Consensus        85 --k----nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   85 --K----NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             --h----cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence              2    788888888887764432211 00 0123477777775

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.07  E-value=0.00021  Score=70.44  Aligned_cols=105  Identities=20%  Similarity=0.279  Sum_probs=66.9

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      ++.|++|++++| ++.++     +.+..++.|++|+|+.| .+..+|-.+.. .|+ |+.|.+++| .++.+-+.+    
T Consensus       186 l~ale~LnLshN-k~~~v-----~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~-gc~-L~~L~lrnN-~l~tL~gie----  251 (1096)
T KOG1859|consen  186 LPALESLNLSHN-KFTKV-----DNLRRLPKLKHLDLSYN-CLRHVPQLSMV-GCK-LQLLNLRNN-ALTTLRGIE----  251 (1096)
T ss_pred             HHHhhhhccchh-hhhhh-----HHHHhcccccccccccc-hhccccccchh-hhh-heeeeeccc-HHHhhhhHH----
Confidence            467888888888 44443     23567888888888876 66666655543 444 888888888 777665555    


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                             .+.+|+.|+++++- +..... -.....+..|++|++.++|
T Consensus       252 -------~LksL~~LDlsyNl-l~~hse-L~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  252 -------NLKSLYGLDLSYNL-LSEHSE-LEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             -------hhhhhhccchhHhh-hhcchh-hhHHHHHHHHHHHhhcCCc
Confidence                   66778888887664 322222 1123345566777766543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.97  E-value=0.0029  Score=60.95  Aligned_cols=82  Identities=18%  Similarity=0.198  Sum_probs=41.5

Q ss_pred             CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694           29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR  108 (384)
Q Consensus        29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  108 (384)
                      +..+++|..|++.++ ++..+...  ...+++|++|+++++ .|+.+.+..           .++.|+.|++.++. ++.
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i~~~--l~~~~~L~~L~ls~N-~I~~i~~l~-----------~l~~L~~L~l~~N~-i~~  154 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKIENL--LSSLVNLQVLDLSFN-KITKLEGLS-----------TLTLLKELNLSGNL-ISD  154 (414)
T ss_pred             cccccceeeeecccc-chhhcccc--hhhhhcchheecccc-ccccccchh-----------hccchhhheeccCc-chh
Confidence            345556666666655 44444331  234566666666666 555554433           44445666665554 333


Q ss_pred             cccCcccccCCCCceeEeeccC
Q 016694          109 FCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus       109 ~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                      +..    ...+++|+.+++.++
T Consensus       155 ~~~----~~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen  155 ISG----LESLKSLKLLDLSYN  172 (414)
T ss_pred             ccC----CccchhhhcccCCcc
Confidence            332    122555555555553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.55  E-value=0.032  Score=46.98  Aligned_cols=83  Identities=17%  Similarity=0.288  Sum_probs=57.4

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      .+...++++++ .+.....   +.++++|.+|.+.+| .|..+.+....         .+|+|..|.+.++. +.++.. 
T Consensus        42 d~~d~iDLtdN-dl~~l~~---lp~l~rL~tLll~nN-rIt~I~p~L~~---------~~p~l~~L~LtnNs-i~~l~d-  105 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLDN---LPHLPRLHTLLLNNN-RITRIDPDLDT---------FLPNLKTLILTNNS-IQELGD-  105 (233)
T ss_pred             cccceeccccc-chhhccc---CCCccccceEEecCC-cceeeccchhh---------hccccceEEecCcc-hhhhhh-
Confidence            46677888887 4444322   247799999999998 88888665532         78889999998765 444443 


Q ss_pred             cccccCCCCceeEeeccCC
Q 016694          113 TENIIEMPELRYLAIENCP  131 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c~  131 (384)
                      ......||.|++|.+-+.+
T Consensus       106 l~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen  106 LDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             cchhccCCccceeeecCCc
Confidence            2245668888888877643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.41  E-value=0.0052  Score=59.21  Aligned_cols=104  Identities=19%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|+.|++.++ .++.+    ...+..+++|++|+++++ .++++...   ..+..|+.|++.+| .+..+....   
T Consensus        93 ~~~~l~~l~l~~n-~i~~i----~~~l~~~~~L~~L~ls~N-~I~~i~~l---~~l~~L~~L~l~~N-~i~~~~~~~---  159 (414)
T KOG0531|consen   93 KLKSLEALDLYDN-KIEKI----ENLLSSLVNLQVLDLSFN-KITKLEGL---STLTLLKELNLSGN-LISDISGLE---  159 (414)
T ss_pred             cccceeeeecccc-chhhc----ccchhhhhcchheecccc-ccccccch---hhccchhhheeccC-cchhccCCc---
Confidence            5677888888887 56665    332567888888888887 66666554   46677888888888 676665433   


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                              .+++|+.++++++. ++.+.. .. ...+.+++.+++.+.
T Consensus       160 --------~l~~L~~l~l~~n~-i~~ie~-~~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  160 --------SLKSLKLLDLSYNR-IVDIEN-DE-LSELISLEELDLGGN  196 (414)
T ss_pred             --------cchhhhcccCCcch-hhhhhh-hh-hhhccchHHHhccCC
Confidence                    46677777777776 333322 00 345666666666664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.0016  Score=57.21  Aligned_cols=85  Identities=19%  Similarity=0.239  Sum_probs=65.6

Q ss_pred             CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC  110 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  110 (384)
                      .+.+.+.|++-+| .+.++   +++..++.|+.|.++=| +|+.+.+..           .|.+|++|.+..+. +.++.
T Consensus        17 dl~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~pl~-----------rCtrLkElYLRkN~-I~sld   79 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLAPLQ-----------RCTRLKELYLRKNC-IESLD   79 (388)
T ss_pred             HHHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccchhHH-----------HHHHHHHHHHHhcc-cccHH
Confidence            3567888888888 55644   55789999999999998 888886655           88999999998765 55554


Q ss_pred             cCcccccCCCCceeEeeccCCCc
Q 016694          111 NFTENIIEMPELRYLAIENCPDM  133 (384)
Q Consensus       111 ~~~~~~~~~~~L~~L~l~~c~~l  133 (384)
                      . .....++|+|+.|++...|-.
T Consensus        80 E-L~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   80 E-LEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             H-HHHHhcCchhhhHhhccCCcc
Confidence            4 345678999999999876543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.19  E-value=0.0031  Score=52.86  Aligned_cols=40  Identities=25%  Similarity=0.378  Sum_probs=20.5

Q ss_pred             cccccceeccCccccccccccCcccccCCCCceeEeeccCCC
Q 016694           91 LFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD  132 (384)
Q Consensus        91 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~  132 (384)
                      ..++|+.|++++|+.+++...  ..+..+++|+.|.+.+.+.
T Consensus       149 ~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             cccchheeeccCCCeechhHH--HHHHHhhhhHHHHhcCchh
Confidence            445566666666655554332  1234455555555555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.67  E-value=0.0033  Score=52.73  Aligned_cols=37  Identities=22%  Similarity=0.211  Sum_probs=15.1

Q ss_pred             ecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 016694          286 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC  323 (384)
Q Consensus       286 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c  323 (384)
                      .++|+.|+|++|+.+++.... .+..+++|+.|.+.+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDL  186 (221)
T ss_pred             ccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCc
Confidence            444444444444444443321 1333444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.39  E-value=0.018  Score=50.27  Aligned_cols=35  Identities=37%  Similarity=0.515  Sum_probs=15.3

Q ss_pred             ccccEEeeccCcc--cccccCCcccCCCcCEEEeecCC
Q 016694          205 ANLIRLKISECSK--LQKLVTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       205 ~~L~~L~l~~~~~--l~~l~~~~~~~~~L~~L~l~~c~  240 (384)
                      ++|++|+++++..  +.++ ..+..+.+|..|++.+|.
T Consensus        91 P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CceeEEeecCCcccccccc-chhhhhcchhhhhcccCC
Confidence            5555555554321  2222 223344445555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.61  E-value=0.031  Score=48.85  Aligned_cols=112  Identities=16%  Similarity=0.231  Sum_probs=65.9

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCC--CCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCT--NMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~--~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      +..|+.|.+.++ .+..+ ..    +-.+++||+|.++.+.  -..++...  +..+++|++|++++| ++..+....  
T Consensus        42 ~~~le~ls~~n~-gltt~-~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~N-ki~~lstl~--  110 (260)
T KOG2739|consen   42 FVELELLSVINV-GLTTL-TN----FPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGN-KIKDLSTLR--  110 (260)
T ss_pred             ccchhhhhhhcc-ceeec-cc----CCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCC-ccccccccc--
Confidence            455666666665 33331 12    2367899999999873  22233333  567799999999999 665321111  


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccc-cCCCCceeEeeccCCCc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENI-IEMPELRYLAIENCPDM  133 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~c~~l  133 (384)
                        .+.    .+.+|..|++.+|... .+..+...+ .-+|+|++|+-..+..-
T Consensus       111 --pl~----~l~nL~~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  111 --PLK----ELENLKSLDLFNCSVT-NLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             --hhh----hhcchhhhhcccCCcc-ccccHHHHHHHHhhhhccccccccCCc
Confidence              111    5677888888888733 233212222 23678888876665443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.82  E-value=0.14  Score=24.77  Aligned_cols=17  Identities=12%  Similarity=0.288  Sum_probs=7.3

Q ss_pred             CCccEEEeccCCCCCccC
Q 016694          313 PSLEHVVVRQCPTMKIFS  330 (384)
Q Consensus       313 ~~L~~L~l~~c~~l~~lp  330 (384)
                      ++|++|++++|. ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            355666666664 44443

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.67  E-value=0.11  Score=26.97  Aligned_cols=19  Identities=11%  Similarity=0.137  Sum_probs=13.0

Q ss_pred             CccEEEeccCCCCCccCCCC
Q 016694          314 SLEHVVVRQCPTMKIFSQGV  333 (384)
Q Consensus       314 ~L~~L~l~~c~~l~~lp~~~  333 (384)
                      +|++|++++| .++.+|.++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSS-EESEEGTTT
T ss_pred             CccEEECCCC-cCEeCChhh
Confidence            4677777777 666777654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.73  E-value=2.7  Score=32.61  Aligned_cols=36  Identities=11%  Similarity=0.097  Sum_probs=12.7

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEec
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRN   68 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~   68 (384)
                      ..+.+|+.+.+..  .+..+... .+.++++|+.+.+.+
T Consensus         9 ~~~~~l~~i~~~~--~~~~I~~~-~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    9 YNCSNLESITFPN--TIKKIGEN-AFSNCTSLKSINFPN   44 (129)
T ss_dssp             TT-TT--EEEETS--T--EE-TT-TTTT-TT-SEEEESS
T ss_pred             hCCCCCCEEEECC--CeeEeChh-hcccccccccccccc
Confidence            3444555555543  23333222 234555555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=89.43  E-value=0.052  Score=42.94  Aligned_cols=83  Identities=17%  Similarity=0.290  Sum_probs=51.9

Q ss_pred             CccEEEeecCCCCcccCc-hhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           34 NLRHLVVDDCTNMLSAIP-ANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        34 ~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      .+..++|+.| .+..++. .+......+|...++++| .++++++..-.         .+|-++.|++.++. +.++|. 
T Consensus        28 E~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~---------kf~t~t~lNl~~ne-isdvPe-   94 (177)
T KOG4579|consen   28 ELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTI---------KFPTATTLNLANNE-ISDVPE-   94 (177)
T ss_pred             Hhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhh---------ccchhhhhhcchhh-hhhchH-
Confidence            4455666776 3332211 112335566777788887 77777654432         56677888887766 667776 


Q ss_pred             cccccCCCCceeEeeccCC
Q 016694          113 TENIIEMPELRYLAIENCP  131 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c~  131 (384)
                        ....+|.|+.++++..+
T Consensus        95 --E~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   95 --ELAAMPALRSLNLRFNP  111 (177)
T ss_pred             --HHhhhHHhhhcccccCc
Confidence              46778888888887754

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=87.58  E-value=0.039  Score=43.63  Aligned_cols=84  Identities=19%  Similarity=0.139  Sum_probs=59.6

Q ss_pred             CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694           29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR  108 (384)
Q Consensus        29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  108 (384)
                      +.....|+.+++++| .+.++ |..+....+....|+++++ .+.++|.+. .         .+|.|+.|++..++ +..
T Consensus        49 l~~~~el~~i~ls~N-~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPeE~-A---------am~aLr~lNl~~N~-l~~  114 (177)
T KOG4579|consen   49 LSKGYELTKISLSDN-GFKKF-PKKFTIKFPTATTLNLANN-EISDVPEEL-A---------AMPALRSLNLRFNP-LNA  114 (177)
T ss_pred             HhCCceEEEEecccc-hhhhC-CHHHhhccchhhhhhcchh-hhhhchHHH-h---------hhHHhhhcccccCc-ccc
Confidence            346678999999998 77777 4445557788999999999 899997664 2         78999999999887 433


Q ss_pred             cccCcccccCCCCceeEeecc
Q 016694          109 FCNFTENIIEMPELRYLAIEN  129 (384)
Q Consensus       109 ~~~~~~~~~~~~~L~~L~l~~  129 (384)
                      .+.   -+..+.++-.|+..+
T Consensus       115 ~p~---vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  115 EPR---VIAPLIKLDMLDSPE  132 (177)
T ss_pred             chH---HHHHHHhHHHhcCCC
Confidence            433   233344555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.41  E-value=0.15  Score=45.03  Aligned_cols=93  Identities=12%  Similarity=-0.017  Sum_probs=47.3

Q ss_pred             CCCCceEecCCCcCcce--ecccCCCCCCCCCCccEEEeecCC--CCcccCc------hhHHhcCCCCCEEEEecccCcc
Q 016694            4 FRDIKYLQLGHFPRLQE--IWHGQALPVSFFNNLRHLVVDDCT--NMLSAIP------ANLIRCLNNLRWLEVRNCDSLE   73 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~--i~~~~p~~i~~l~~L~~L~l~~c~--~l~~~~~------~~~~~~l~~L~~L~l~~~~~l~   73 (384)
                      +..+..++++++.--++  -|.  ...|.+-.+|+..++++-.  ...+..+      ....-+||+|++.++++| .+.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l--~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg  105 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEEL--CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFG  105 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHH--HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccC
Confidence            44567778887742221  122  2234556677777776531  1111111      112337888888888888 443


Q ss_pred             eecccccccccccccCCcccccceeccCccc
Q 016694           74 EVLHLEELNADKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  104 (384)
                      ...++..+ +.+.    .-..|++|.+.+|.
T Consensus       106 ~~~~e~L~-d~is----~~t~l~HL~l~NnG  131 (388)
T COG5238         106 SEFPEELG-DLIS----SSTDLVHLKLNNNG  131 (388)
T ss_pred             cccchHHH-HHHh----cCCCceeEEeecCC
Confidence            22222111 1111    34567888887775

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.43  E-value=0.46  Score=25.69  Aligned_cols=16  Identities=25%  Similarity=0.264  Sum_probs=8.4

Q ss_pred             cccceeecccCCCCce
Q 016694          287 EELGYLGLDCLPSLTS  302 (384)
Q Consensus       287 ~~L~~L~l~~c~~L~~  302 (384)
                      ++|++|++++|+++++
T Consensus         2 ~~L~~L~l~~C~~itD   17 (26)
T smart00367        2 PNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCEeCCCCCCCcCH
Confidence            4455555555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=82.07  E-value=5  Score=31.03  Aligned_cols=105  Identities=11%  Similarity=0.145  Sum_probs=54.5

Q ss_pred             CCCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccc
Q 016694            1 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE   80 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (384)
                      |..+++|+.+.+..  .++.+.   ..++..+++|+.+++..  .+..+.. ..+.+++.|+++.+.+  .+..+....+
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~---~~~F~~~~~l~~i~~~~--~~~~i~~-~~F~~~~~l~~i~~~~--~~~~i~~~~F   77 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIG---ENAFSNCTSLKSINFPN--NLTSIGD-NAFSNCKSLESITFPN--NLKSIGDNAF   77 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE----TTTTTT-TT-SEEEESS--TTSCE-T-TTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred             HhCCCCCCEEEECC--CeeEeC---hhhcccccccccccccc--cccccce-eeeecccccccccccc--cccccccccc
Confidence            45667899999874  355552   23467788999999987  4565533 3456888899999965  4555554432


Q ss_pred             ccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeecc
Q 016694           81 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN  129 (384)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  129 (384)
                      .         .+++|+.+.+..  .+..++.  .....+ +|+.+.+..
T Consensus        78 ~---------~~~~l~~i~~~~--~~~~i~~--~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   78 S---------NCTNLKNIDIPS--NITEIGS--SSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T---------T-TTECEEEETT--T-BEEHT--TTTTT--T--EEE-TT
T ss_pred             c---------ccccccccccCc--cccEEch--hhhcCC-CceEEEECC
Confidence            1         477888888854  2445544  122334 777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 49/322 (15%), Positives = 106/322 (32%), Gaps = 54/322 (16%)

Query: 36  RHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC-----DSLEEVLHLEELNADKEHIGP 90
            H+ +  C    +A P  L R   NLR L+++        +L        +      I  
Sbjct: 53  EHVTMALCY---TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISN 109

Query: 91  LFPKLFELTLMDLPKLKRFCNFTENIIE------MPELRYLAIENCPDMETFISNSVVHV 144
              +L  +         R    ++  ++        +L  L ++ C     F ++ ++ +
Sbjct: 110 NLRQLKSVHF-------RRMIVSDLDLDRLAKARADDLETLKLDKCSG---FTTDGLLSI 159

Query: 145 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAF 204
            T  ++ + L  EE+ F     + L +       L  L            K + +  +  
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT----EFAKISPKDLETI 215

Query: 205 A----NLIRLKISECSK--LQKLVTPSWHLENLATLEVSKCHGLI-NVLTLSTSESLVNL 257
           A    +L+ +K+ +     L      + +LE      +++  G+    + L     L  L
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 258 GRMKIADCKMI------EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSF----CLGN 307
           G   +   +M        QI +L +       ++  E     +   P+L        +G+
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLL----YALLETEDHCTLIQKCPNLEVLETRNVIGD 331

Query: 308 YALEF-----PSLEHVVVRQCP 324
             LE        L+ + + +  
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGA 353

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 56/351 (15%), Positives = 107/351 (30%), Gaps = 57/351 (16%)

Query: 25  QALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD-------SLEEVL- 76
             L  +  ++L  L +D C+   +    +++     ++ L +            L E+  
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 77  ---HLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 133
               LE LN        + PK  E    +   L         I+E+      A  N  + 
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA-ANLEEF 248

Query: 134 ETFISNSVVHVTT---DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS----- 185
                N  + +     +   P KL      ++     P+        Q+R L+L      
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA--AQIRKLDLLYALLE 306

Query: 186 ---------RLHKVQHLWKEN---DESNKAFA----NLIRLKISECSKLQKLVTPSWHLE 229
                    +   ++ L   N   D   +  A     L RL+I   +  Q +      + 
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 230 NLATLEVSK-CHGLINVLTLS----TSESLVNLGRM-------KIADCKMIEQIIQLQ-- 275
               + +++ C  L   + +     T+ESL ++G         ++      E+I  L   
Sbjct: 367 QRGLIALAQGCQEL-EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425

Query: 276 --VGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 324
             V     GC          L     LT   L       P++  +++    
Sbjct: 426 NGVRSLLIGCKKLRRF-AFYLRQ-GGLTDLGLSYIGQYSPNVRWMLLGYVG 474

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 57/318 (17%), Positives = 100/318 (31%), Gaps = 87/318 (27%)

Query: 4   FRDIKYLQLGHFPRLQEIWH-GQALPVSFFNNLRH---LVVDDCTNM---------LSAI 50
           + D +     +  RLQ      QAL       LR    +++D    +         L   
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQAL-----LELRPAKNVLID---GVLGSGKTWVALDVC 171

Query: 51  PANLIRCLNNLR--WLEVRNCDSLEEVL-HLEEL--NADKE-HIGPLFPKLFELTLMDL- 103
            +  ++C  + +  WL ++NC+S E VL  L++L    D             +L +  + 
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 104 PKLKRFCNFTENIIEMPELRYLAI----ENCPDMETFISNSVVHVTTDNKEPEKLTSEEN 159
            +L+R       +   P    L +    +N      F  +  + +TT  K+         
Sbjct: 232 AELRRL------LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ--------- 276

Query: 160 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ 219
             +TD +                 +S  H    L    DE        +  +       Q
Sbjct: 277 --VTDFLSA----------ATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRP------Q 316

Query: 220 KLVTPSWHLENLATLEVSKCHGL-INVLTLSTSESLVNLGRMKIADCKMIEQIIQ--LQV 276
            L  P          EV   +   ++++  S  + L      K  +C  +  II+  L V
Sbjct: 317 DL--PR---------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 277 GEEA------KGCVVFEE 288
            E A          VF  
Sbjct: 366 LEPAEYRKMFDRLSVFPP 383

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 40/333 (12%), Positives = 107/333 (32%), Gaps = 45/333 (13%)

Query: 7   IKYLQLGHFPRLQ--EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWL 64
           ++ L  G +      +++ G ++ +S    LR L      + + A    +    + L  L
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL--SGFWDAVPAYLPAVYSVCSRLTTL 294

Query: 65  EVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRY 124
            +         L           +    PKL  L ++D  +               +LR 
Sbjct: 295 NLSYATVQSYDL---------VKLLCQCPKLQRLWVLDYIEDAGLEVLAST---CKDLRE 342

Query: 125 LAIENCPDME----TFISN-SVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQL 179
           L +             ++   +V V+    + E +       +T+    L       P +
Sbjct: 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAA--LITIARNRPNM 399

Query: 180 RYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 239
               L  +      +   +  +  F  ++      C  L++L   S  L +     +   
Sbjct: 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH----CKDLRRLSL-SGLLTDKVFEYIGTY 454

Query: 240 HGLINVLTLS----TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLD 295
              + +L+++    +   + ++       C  + ++       E + C   ++       
Sbjct: 455 AKKMEMLSVAFAGDSDLGMHHVLS----GCDSLRKL-------EIRDCPFGDKALLANAS 503

Query: 296 CLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 328
            L ++ S  + + ++ F + +  + ++ P + +
Sbjct: 504 KLETMRSLWMSSCSVSFGACKL-LGQKMPKLNV 535

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 49/337 (14%), Positives = 90/337 (26%), Gaps = 64/337 (18%)

Query: 32  FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLH-----------LEE 80
           F N + LV+  C    +   A +     NL+ L++R  D  +   H           L  
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188

Query: 81  LN----------ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130
           LN          +  E +    P L  L L     L++     +     P+L  L     
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR---APQLEELGTGGY 245

Query: 131 PDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS----- 185
                    S + V     +  +  S     +   +  ++       +L  L LS     
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS---VCSRLTTLNLSYATVQ 302

Query: 186 ---------RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 236
                    +  K+Q LW  +   +     L       C  L++L      +       +
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST----CKDLREL-----RVFPSEPFVM 353

Query: 237 SKCHGLINVLTLSTSESLVNLGRMKIADCKMI--EQIIQLQVGEEAKGCVVFEELGYLGL 294
                L     +S S     L    +  C+ +    +I +     A+            +
Sbjct: 354 EPNVALTEQGLVSVSMGCPKL-ESVLYFCRQMTNAALITI-----ARNRPNMTRFRLCII 407

Query: 295 DCL------PSLTSFCLGNYALEFPSLEHVVVRQCPT 325
           +                G        L  + +    T
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLT 444

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.59
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.56
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.56
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.53
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.49
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.46
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.41
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.4
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.38
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.38
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.37
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.32
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.31
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.28
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.28
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.25
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.19
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.15
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.1
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.03
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.97
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.95
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.91
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.87
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.84
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.84
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.78
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.77
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.66
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.05
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.03
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.92
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.76
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.94
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.56
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	88.88
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	85.74

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=3.9e-21  Score=182.09  Aligned_cols=293  Identities=13%  Similarity=0.115  Sum_probs=177.2

Q ss_pred             CCCCceEecCCCcCcceecccCCCC-CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALP-VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~-i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      ++++++|++.++ .+..+    |.. +..+++|++|++++| .+.++++.. ++.+++|++|++++| .+..+++.... 
T Consensus        44 l~~l~~l~l~~~-~l~~l----~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~-  114 (390)
T 3o6n_A           44 LNNQKIVTFKNS-TMRKL----PAALLDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQ-  114 (390)
T ss_dssp             GCCCSEEEEESC-EESEE----CTHHHHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT-
T ss_pred             cCCceEEEecCC-chhhC----ChhHhcccccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCC-CCCcCCHHHhc-
Confidence            456666666666 45554    432 245666666666666 455554332 346666666666666 55555443322 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCccccc
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTS  156 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~  156 (384)
                              .+++|++|+++++. ++.++.  .....+++|++|+++++. ++.++      .++|++|+++++.....+ 
T Consensus       115 --------~l~~L~~L~L~~n~-l~~l~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-  181 (390)
T 3o6n_A          115 --------NVPLLTVLVLERND-LSSLPR--GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD-  181 (390)
T ss_dssp             --------TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC-
T ss_pred             --------CCCCCCEEECCCCc-cCcCCH--HHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc-
Confidence                    55666666666654 444543  122456666666666643 22221      244666666655432211 


Q ss_pred             cccccccCCcccc------cCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCC
Q 016694          157 EENFFLTDQIQPL------FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN  230 (384)
Q Consensus       157 ~~~~~~~~~l~~l------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  230 (384)
                         ...+..+..+      +...+..++|++|+++++ .+..++.      ..+++|+.|+++++. ++.. ..+..+++
T Consensus       182 ---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n-~l~~~~~------~~~~~L~~L~l~~n~-l~~~-~~l~~l~~  249 (390)
T 3o6n_A          182 ---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRG------PVNVELTILKLQHNN-LTDT-AWLLNYPG  249 (390)
T ss_dssp             ---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS-CCCEEEC------CCCSSCCEEECCSSC-CCCC-GGGGGCTT
T ss_pred             ---cccccccceeecccccccccCCCCcceEEECCCC-eeeeccc------cccccccEEECCCCC-Cccc-HHHcCCCC
Confidence               0000000000      000113456777777765 3443322      335789999999864 5554 46778899


Q ss_pred             cCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCccc
Q 016694          231 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL  310 (384)
Q Consensus       231 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~  310 (384)
                      |++|+++++. ++.+. +..+..+++|++|+++++ .+..++.. .       ..+++|++|+++++ .++.++.  ...
T Consensus       250 L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~-~-------~~l~~L~~L~L~~n-~l~~~~~--~~~  315 (390)
T 3o6n_A          250 LVEVDLSYNE-LEKIM-YHPFVKMQRLERLYISNN-RLVALNLY-G-------QPIPTLKVLDLSHN-HLLHVER--NQP  315 (390)
T ss_dssp             CSEEECCSSC-CCEEE-SGGGTTCSSCCEEECCSS-CCCEEECS-S-------SCCTTCCEEECCSS-CCCCCGG--GHH
T ss_pred             ccEEECCCCc-CCCcC-hhHccccccCCEEECCCC-cCcccCcc-c-------CCCCCCCEEECCCC-cceecCc--ccc
Confidence            9999999975 55542 345678899999999985 46655432 1       23889999999987 5666644  356


Q ss_pred             CCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          311 EFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       311 ~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      .+++|++|++++|+ ++.++  +..+++|+++++++|
T Consensus       316 ~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          316 QFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             HHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSS
T ss_pred             ccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCC
Confidence            78999999999985 66666  455889999999998

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=3.4e-21  Score=179.51  Aligned_cols=207  Identities=13%  Similarity=0.214  Sum_probs=126.8

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|++|++.++ .+..+    + .+..+++|++|++++| +++++++   +.++++|++|++++| .+..++.-    
T Consensus        42 ~l~~L~~L~l~~~-~i~~~----~-~~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~~~~----  106 (347)
T 4fmz_A           42 ELESITKLVVAGE-KVASI----Q-GIEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDISAL----  106 (347)
T ss_dssp             HHTTCSEEECCSS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGG----
T ss_pred             hcccccEEEEeCC-ccccc----h-hhhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCchHH----
Confidence            4578899999988 56554    3 3678899999999988 7777655   568899999999998 77766421    


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----CCCeeEEEecCCCCccccccc
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEE  158 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~i~~~~~~~~~~~~  158 (384)
                         .    .+++|++|+++++. ++.++.    ...+++|+.|++++|......+    .++|++|.+.++.....+.  
T Consensus       107 ---~----~l~~L~~L~l~~n~-i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--  172 (347)
T 4fmz_A          107 ---Q----NLTNLRELYLNEDN-ISDISP----LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--  172 (347)
T ss_dssp             ---T----TCTTCSEEECTTSC-CCCCGG----GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--
T ss_pred             ---c----CCCcCCEEECcCCc-ccCchh----hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--
Confidence               1    77889999998876 555543    5678889999998887665543    4568888888765432211  


Q ss_pred             cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeec
Q 016694          159 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK  238 (384)
Q Consensus       159 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  238 (384)
                                    .+.+++|++|+++++ .+..+..     ...+++|+.|+++++ .+..++. +..+++|++|++++
T Consensus       173 --------------~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          173 --------------IANLTDLYSLSLNYN-QIEDISP-----LASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGN  230 (347)
T ss_dssp             --------------GGGCTTCSEEECTTS-CCCCCGG-----GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred             --------------hccCCCCCEEEccCC-ccccccc-----ccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccC
Confidence                          124556666666655 2222211     234445555555543 2332222 34445555555555


Q ss_pred             CCCCeeecccccccccCcccEEeecc
Q 016694          239 CHGLINVLTLSTSESLVNLGRMKIAD  264 (384)
Q Consensus       239 c~~l~~l~~~~~~~~l~~L~~L~l~~  264 (384)
                      |. ++.++.   +..+++|++|++++
T Consensus       231 n~-l~~~~~---~~~l~~L~~L~l~~  252 (347)
T 4fmz_A          231 NK-ITDLSP---LANLSQLTWLEIGT  252 (347)
T ss_dssp             SC-CCCCGG---GTTCTTCCEEECCS
T ss_pred             Cc-cCCCcc---hhcCCCCCEEECCC
Confidence            42 333211   33445555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=1.9e-20  Score=180.80  Aligned_cols=314  Identities=14%  Similarity=0.103  Sum_probs=204.0

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|++|+++++ .+..+   .|..++.+++|++|++++|.....+++ ..++++++|++|++++| .+..+.+....   
T Consensus        30 ~~l~~L~Ls~n-~i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---  100 (455)
T 3v47_A           30 AHVNYVDLSLN-SIAEL---NETSFSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYN-QFLQLETGAFN---  100 (455)
T ss_dssp             TTCCEEECCSS-CCCEE---CTTTTSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTC-TTCEECTTTTT---
T ss_pred             CccCEEEecCC-ccCcC---ChhHhccCccccEEECcCCcccceECc-ccccccccCCEEeCCCC-ccCccChhhcc---
Confidence            57899999998 56553   156678899999999999843334433 33578899999999998 77777554432   


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCcccc-cc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLT-SE  157 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~-~~  157 (384)
                            .+++|++|+++++..-..++. ......+++|++|+++++......|      .++|++|+++++...... ..
T Consensus       101 ------~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  173 (455)
T 3v47_A          101 ------GLANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED  173 (455)
T ss_dssp             ------TCTTCCEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred             ------CcccCCEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence                  678888888888863222333 2235668888888888864322212      456888888777654321 11


Q ss_pred             ccc--------ccc--CCccccc---------CCccccCCccEEecccccc----------------cccccccc-----
Q 016694          158 ENF--------FLT--DQIQPLF---------DEKVAFPQLRYLELSRLHK----------------VQHLWKEN-----  197 (384)
Q Consensus       158 ~~~--------~~~--~~l~~l~---------~~~~~~~~L~~L~l~~~~~----------------l~~l~~~~-----  197 (384)
                      ..-        ...  ..+..+.         .....+++|++|+++++.-                ++.+...+     
T Consensus       174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  253 (455)
T 3v47_A          174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG  253 (455)
T ss_dssp             SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred             hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence            100        000  0011100         0011346778888777621                11111000     


Q ss_pred             -------cc-----c--ccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeec
Q 016694          198 -------DE-----S--NKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA  263 (384)
Q Consensus       198 -------~~-----~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~  263 (384)
                             +.     .  ....++|+.|+++++......|..+..+++|++|+++++. ++.+. +..+..+++|++|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls  331 (455)
T 3v47_A          254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKID-DNAFWGLTHLLKLNLS  331 (455)
T ss_dssp             CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECC
T ss_pred             cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccC-hhHhcCcccCCEEECC
Confidence                   00     0  0123689999999876555566678889999999999975 55542 3356788999999999


Q ss_pred             ccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeee
Q 016694          264 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKV  342 (384)
Q Consensus       264 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l  342 (384)
                      +| .+..+...       ....+++|++|+++++ .++.+... .+..+++|++|++++| .++.+|.+. ..+++|+++
T Consensus       332 ~N-~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  400 (455)
T 3v47_A          332 QN-FLGSIDSR-------MFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI  400 (455)
T ss_dssp             SS-CCCEECGG-------GGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             CC-ccCCcChh-------HhcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence            96 45655432       1223899999999986 56666443 3678999999999997 567777654 578999999


Q ss_pred             ccCCC
Q 016694          343 KPTEE  347 (384)
Q Consensus       343 ~i~~~  347 (384)
                      ++++|
T Consensus       401 ~l~~N  405 (455)
T 3v47_A          401 WLHTN  405 (455)
T ss_dssp             ECCSS
T ss_pred             EccCC
Confidence            99999

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=1.4e-21  Score=200.94  Aligned_cols=239  Identities=15%  Similarity=0.049  Sum_probs=138.0

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +++|++|+++++.-...+    |..++.+++|++|++++| ++.+..|...++++++|++|++++| .+.+..+....  
T Consensus       293 ~~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~--  364 (768)
T 3rgz_A          293 CDTLTGLDLSGNHFYGAV----PPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLT--  364 (768)
T ss_dssp             CTTCSEEECCSSEEEECC----CGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSS-EEEECCCTTHH--
T ss_pred             cCcCCEEECcCCcCCCcc----chHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHHHH--
Confidence            589999999999432234    777889999999999998 5564445555678999999999999 66533332211  


Q ss_pred             cccccCCccc-ccceeccCccccccccccCcccccC--CCCceeEeeccCCCccccc-----CCCeeEEEecCCCCcc-c
Q 016694           84 DKEHIGPLFP-KLFELTLMDLPKLKRFCNFTENIIE--MPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK-L  154 (384)
Q Consensus        84 ~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~--~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~-~  154 (384)
                             .++ +|++|+++++.....++.   ....  +++|++|++++|.....+|     .++|++|+++++.... .
T Consensus       365 -------~l~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          365 -------NLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             -------HHTTTCSEEECCSSEEEEECCT---TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             -------hhhcCCcEEEccCCCcCCCcCh---hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence                   233 555555555542222222   1111  3444444444442211111     2334444444433221 1


Q ss_pred             cccc---------cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCc
Q 016694          155 TSEE---------NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS  225 (384)
Q Consensus       155 ~~~~---------~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  225 (384)
                      +..+         .+..+.-...++...+.+++|++|+++++.-...++..    ...+++|++|++++|.....+|..+
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH----HhcCCCCCEEEccCCccCCcCChHH
Confidence            1000         00011111122333446778888888877322222221    3567888888888876555777777


Q ss_pred             ccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccc
Q 016694          226 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK  266 (384)
Q Consensus       226 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~  266 (384)
                      ..+++|++|++++|.-...+  +..+..+++|++|++++|.
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSE
T ss_pred             hcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCc
Confidence            88888888888887533343  4456778888888888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.87  E-value=1.4e-20  Score=175.28  Aligned_cols=278  Identities=17%  Similarity=0.237  Sum_probs=210.9

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++|++|+++++ .+..+    +. +..+++|++|++++| .++.++ .  ++++++|++|++++| .+..+++..  
T Consensus        63 ~~~~~L~~L~l~~n-~i~~~----~~-~~~l~~L~~L~L~~n-~i~~~~-~--~~~l~~L~~L~l~~n-~i~~~~~~~--  129 (347)
T 4fmz_A           63 EYLTNLEYLNLNGN-QITDI----SP-LSNLVKLTNLYIGTN-KITDIS-A--LQNLTNLRELYLNED-NISDISPLA--  129 (347)
T ss_dssp             GGCTTCCEEECCSS-CCCCC----GG-GTTCTTCCEEECCSS-CCCCCG-G--GTTCTTCSEEECTTS-CCCCCGGGT--
T ss_pred             hhcCCccEEEccCC-ccccc----hh-hhcCCcCCEEEccCC-cccCch-H--HcCCCcCCEEECcCC-cccCchhhc--
Confidence            45789999999999 66665    44 788999999999998 777763 2  579999999999999 787775522  


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCccccccc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEE  158 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~~  158 (384)
                               .+++|++|+++++.....++.    ...+++|++|++++|......+   .++|++|+++++....++   
T Consensus       130 ---------~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---  193 (347)
T 4fmz_A          130 ---------NLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS---  193 (347)
T ss_dssp             ---------TCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG---
T ss_pred             ---------cCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc---
Confidence                     789999999999976665543    6789999999999975432222   567999999876632211   


Q ss_pred             cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeec
Q 016694          159 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK  238 (384)
Q Consensus       159 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  238 (384)
                               .    .+.+++|+.|+++++ .+..+..     ...+++|++|++++| .++.++. +..+++|++|++++
T Consensus       194 ---------~----~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~  252 (347)
T 4fmz_A          194 ---------P----LASLTSLHYFTAYVN-QITDITP-----VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGT  252 (347)
T ss_dssp             ---------G----GGGCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred             ---------c----ccCCCccceeecccC-CCCCCch-----hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCC
Confidence                     1    236889999999987 4444321     367899999999997 4666655 78899999999999


Q ss_pred             CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEE
Q 016694          239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHV  318 (384)
Q Consensus       239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L  318 (384)
                      |. ++.+   ..+..+++|++|++++| .+..+.         ....+++|++|++++|. ++..... .+..+++|++|
T Consensus       253 n~-l~~~---~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L  316 (347)
T 4fmz_A          253 NQ-ISDI---NAVKDLTKLKMLNVGSN-QISDIS---------VLNNLSQLNSLFLNNNQ-LGNEDME-VIGGLTNLTTL  316 (347)
T ss_dssp             SC-CCCC---GGGTTCTTCCEEECCSS-CCCCCG---------GGGGCTTCSEEECCSSC-CCGGGHH-HHHTCTTCSEE
T ss_pred             Cc-cCCC---hhHhcCCCcCEEEccCC-ccCCCh---------hhcCCCCCCEEECcCCc-CCCcChh-HhhccccCCEE
Confidence            84 6554   34678899999999996 455442         12238999999999974 4444321 25679999999


Q ss_pred             EeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          319 VVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       319 ~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      ++++|+ ++.++. +..+++|+++++++|
T Consensus       317 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          317 FLSQNH-ITDIRP-LASLSKMDSADFANQ  343 (347)
T ss_dssp             ECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred             EccCCc-cccccC-hhhhhccceeehhhh
Confidence            999996 555554 667999999999998

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=2.1e-21  Score=199.58  Aligned_cols=310  Identities=11%  Similarity=0.008  Sum_probs=206.6

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++|++|+++++.-...+    |..++.+++|++|++++| .+.+..+.   ..+++|++|++++| .+.+..+....
T Consensus       220 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n-~l~~~~~~---~~l~~L~~L~L~~n-~l~~~ip~~~~  290 (768)
T 3rgz_A          220 GDCSALQHLDISGNKLSGDF----SRAISTCTELKLLNISSN-QFVGPIPP---LPLKSLQYLSLAEN-KFTGEIPDFLS  290 (768)
T ss_dssp             TTCCSCCEEECCSSCCCSCH----HHHTTTCSSCCEEECCSS-CCEESCCC---CCCTTCCEEECCSS-EEEESCCCCSC
T ss_pred             ccCCCCCEEECcCCcCCCcc----cHHHhcCCCCCEEECCCC-cccCccCc---cccCCCCEEECcCC-ccCCccCHHHH
Confidence            46789999999999433344    666788999999999998 55655454   27899999999999 66633332211


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCc-cc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPE-KL  154 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~-~~  154 (384)
                              ..+++|++|+++++.....++.   ....+++|++|++++|.....+|      .++|++|+++++... .+
T Consensus       291 --------~~~~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~  359 (768)
T 3rgz_A          291 --------GACDTLTGLDLSGNHFYGAVPP---FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL  359 (768)
T ss_dssp             --------TTCTTCSEEECCSSEEEECCCG---GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred             --------hhcCcCCEEECcCCcCCCccch---HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence                    1357888888888874434444   56678888888888865432333      456888888776543 22


Q ss_pred             cccc-------ccc---ccCCcccccCCccc--cCCccEEecccccccccccccccccccccccccEEeeccCccccccc
Q 016694          155 TSEE-------NFF---LTDQIQPLFDEKVA--FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV  222 (384)
Q Consensus       155 ~~~~-------~~~---~~~~l~~l~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  222 (384)
                      +..+       ..+   .+.-...++...+.  +++|++|+++++.-...++..    ...+++|++|++++|.....+|
T Consensus       360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG----GGGCTTCCEEECCSSEEESCCC
T ss_pred             cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH----HhcCCCCCEEECcCCcccCccc
Confidence            2111       000   01000111222222  567888888777322222221    3677889999998876555677


Q ss_pred             CCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCce
Q 016694          223 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTS  302 (384)
Q Consensus       223 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~  302 (384)
                      ..+..+++|+.|++++|.-...+  +..+..+++|++|++++|.....++.        ....+++|++|+++++.--..
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~--------~l~~l~~L~~L~L~~N~l~~~  505 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEIPS--------GLSNCTNLNWISLSNNRLTGE  505 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCCSC
T ss_pred             HHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccCcCCH--------HHhcCCCCCEEEccCCccCCc
Confidence            77888889999999987633333  44567788999999988653222221        222378899999988754334


Q ss_pred             ecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          303 FCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       303 l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      ++.  .+..+++|++|++++|.....+|..+..+++|+++++++|
T Consensus       506 ~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          506 IPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             CCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            433  3677899999999999776688988888999999999988

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=1e-19  Score=182.20  Aligned_cols=109  Identities=13%  Similarity=0.086  Sum_probs=50.1

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|++|+++++ .+..+   .|..++.+++|++|++++| +++..++.. ++++++|++|++++| .+..+.+.... 
T Consensus        55 ~l~~L~~L~Ls~n-~i~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~i~~l~~~~~~-  126 (606)
T 3t6q_A           55 RLINLTFLDLTRC-QIYWI---HEDTFQSQHRLDTLVLTAN-PLIFMAETA-LSGPKALKHLFFIQT-GISSIDFIPLH-  126 (606)
T ss_dssp             TCTTCSEEECTTC-CCCEE---CTTTTTTCTTCCEEECTTC-CCSEECTTT-TSSCTTCCEEECTTS-CCSCGGGSCCT-
T ss_pred             cCccceEEECCCC-cccee---ChhhccCccccCeeeCCCC-cccccChhh-hcccccccEeecccc-CcccCCcchhc-
Confidence            3455555555555 23322   1334455555555555555 344443322 345555555555555 44443222211 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                              .+++|++|+++++. ++.++.  .....+++|++|+++++
T Consensus       127 --------~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A          127 --------NQKTLESLYLGSNH-ISSIKL--PKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             --------TCTTCCEEECCSSC-CCCCCC--CTTCCCTTCCEEECCSS
T ss_pred             --------cCCcccEEECCCCc-ccccCc--ccccCCcccCEEEcccC
Confidence                    45566666666554 333321  01222556666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=3.1e-20  Score=180.54  Aligned_cols=293  Identities=17%  Similarity=0.149  Sum_probs=214.7

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      +++++|+++++ .+..+   .+..+..+++|++|++++| .++.+.+.. ++++++|++|++++| .+..++.....   
T Consensus        32 ~~l~~L~L~~n-~l~~~---~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---  101 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTL---NQDEFASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-RLKLIPLGVFT---  101 (477)
T ss_dssp             TTCSEEECCSS-CCCEE---CTTTTTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCTTSST---
T ss_pred             CCCcEEECCCC-ccceE---CHhHccCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-cCCccCccccc---
Confidence            57899999998 56664   1456788999999999988 777775544 568999999999998 78877655432   


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCccccccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEE  158 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~  158 (384)
                            .+++|++|+++++. ++.+..  .....+++|++|+++++. ++.++      .++|++|+++++....++.  
T Consensus       102 ------~l~~L~~L~Ls~n~-i~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--  169 (477)
T 2id5_A          102 ------GLSNLTKLDISENK-IVILLD--YMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPT--  169 (477)
T ss_dssp             ------TCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCH--
T ss_pred             ------CCCCCCEEECCCCc-cccCCh--hHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccCh--
Confidence                  67899999999887 444432  255678899999998864 33322      4578899888765322110  


Q ss_pred             cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeec
Q 016694          159 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK  238 (384)
Q Consensus       159 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  238 (384)
                               .   .++.+++|+.|+++++ .+..+....   ...+++|++|++++|+.+..++.......+|++|++++
T Consensus       170 ---------~---~l~~l~~L~~L~l~~n-~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  233 (477)
T 2id5_A          170 ---------E---ALSHLHGLIVLRLRHL-NINAIRDYS---FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH  233 (477)
T ss_dssp             ---------H---HHTTCTTCCEEEEESC-CCCEECTTC---SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred             ---------h---HhcccCCCcEEeCCCC-cCcEeChhh---cccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence                     0   1236889999999887 444433221   36788999999999988888888777777999999999


Q ss_pred             CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEE
Q 016694          239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHV  318 (384)
Q Consensus       239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L  318 (384)
                      +. ++.++ ...+..+++|++|+++++. +..+...       ....+++|+.|+++++ .++.+... .+..+++|++|
T Consensus       234 n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L  301 (477)
T 2id5_A          234 CN-LTAVP-YLAVRHLVYLRFLNLSYNP-ISTIEGS-------MLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVL  301 (477)
T ss_dssp             SC-CCSCC-HHHHTTCTTCCEEECCSSC-CCEECTT-------SCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEE
T ss_pred             Cc-ccccC-HHHhcCccccCeeECCCCc-CCccChh-------hccccccCCEEECCCC-ccceECHH-HhcCcccCCEE
Confidence            74 66552 2345788999999999854 6655432       1223889999999885 56666443 36789999999


Q ss_pred             EeccCCCCCccCCCC-cCCCCCeeeccCCCC
Q 016694          319 VVRQCPTMKIFSQGV-VDAPKLNKVKPTEEE  348 (384)
Q Consensus       319 ~l~~c~~l~~lp~~~-~~~~~L~~l~i~~~~  348 (384)
                      ++++| .++.+|... ..+++|+++++++|+
T Consensus       302 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          302 NVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             ECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             ECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence            99998 567777653 568899999999983

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=2.2e-20  Score=186.62  Aligned_cols=147  Identities=14%  Similarity=0.116  Sum_probs=106.2

Q ss_pred             ccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeeccccccccc
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL  254 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l  254 (384)
                      ..++|+.|+++++ .+..++.      ...++|+.|+++++. ++.. ..+..+++|+.|+++++. +..+. +..+..+
T Consensus       209 ~~~~L~~L~ls~n-~l~~~~~------~~~~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l  277 (597)
T 3oja_B          209 IPIAVEELDASHN-SINVVRG------PVNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNE-LEKIM-YHPFVKM  277 (597)
T ss_dssp             CCTTCSEEECCSS-CCCEEEC------SCCSCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCEEE-SGGGTTC
T ss_pred             CCchhheeeccCC-ccccccc------ccCCCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCCc-cCCCC-HHHhcCc
Confidence            3556777777776 3444322      234689999999874 4443 567889999999999975 55442 4456788


Q ss_pred             CcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCc
Q 016694          255 VNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV  334 (384)
Q Consensus       255 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~  334 (384)
                      ++|+.|+++++ .+..++.. .       ..+++|+.|+++++ .++.++.  ....+++|++|++++|. +..+|  +.
T Consensus       278 ~~L~~L~Ls~N-~l~~l~~~-~-------~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~--~~  342 (597)
T 3oja_B          278 QRLERLYISNN-RLVALNLY-G-------QPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK--LS  342 (597)
T ss_dssp             SSCCEEECTTS-CCCEEECS-S-------SCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred             cCCCEEECCCC-CCCCCCcc-c-------ccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcC--hh
Confidence            99999999985 46655433 1       23889999999986 5566543  35678999999999985 55666  34


Q ss_pred             CCCCCeeeccCCC
Q 016694          335 DAPKLNKVKPTEE  347 (384)
Q Consensus       335 ~~~~L~~l~i~~~  347 (384)
                      .+++|+++++++|
T Consensus       343 ~~~~L~~L~l~~N  355 (597)
T 3oja_B          343 THHTLKNLTLSHN  355 (597)
T ss_dssp             TTCCCSEEECCSS
T ss_pred             hcCCCCEEEeeCC
Confidence            5889999999998

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=1.1e-20  Score=189.19  Aligned_cols=109  Identities=14%  Similarity=0.186  Sum_probs=57.1

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++|++|+++++ .+..+   .|..+..+++|++|++++| .++..+|.. ++++++|++|++++| .+..+++....
T Consensus        53 ~~l~~L~~L~Ls~n-~l~~i---~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~  125 (606)
T 3vq2_A           53 SNFSELQWLDLSRC-EIETI---EDKAWHGLHHLSNLILTGN-PIQSFSPGS-FSGLTSLENLVAVET-KLASLESFPIG  125 (606)
T ss_dssp             TTCTTCCEEECTTC-CCCEE---CTTTTTTCTTCCEEECTTC-CCCCCCTTS-STTCTTCCEEECTTS-CCCCSSSSCCT
T ss_pred             cCCccCcEEeCCCC-ccccc---CHHHhhchhhcCEeECCCC-cccccChhh-cCCcccCCEEEccCC-ccccccccccC
Confidence            34566666666666 34443   1334556666666666666 455553332 356666666666666 55544432221


Q ss_pred             cccccccCCcccccceeccCcccccc--ccccCcccccCCCCceeEeeccC
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLK--RFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                               .+++|++|+++++. ++  .+|.   ....+++|++|+++++
T Consensus       126 ---------~l~~L~~L~L~~n~-l~~~~lp~---~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          126 ---------QLITLKKLNVAHNF-IHSCKLPA---YFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             ---------TCTTCCEEECCSSC-CCCCCCCG---GGGTCTTCCEEECCSS
T ss_pred             ---------CCCCCCEEeCCCCc-ccceechH---hHhhcCCCCEEEccCC
Confidence                     44555555555554 22  1222   3445555555555553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=3.6e-20  Score=185.39  Aligned_cols=160  Identities=15%  Similarity=0.100  Sum_probs=101.3

Q ss_pred             cccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccc
Q 016694          174 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES  253 (384)
Q Consensus       174 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~  253 (384)
                      +.+++|+.|+++++. +..+..  ......+++|++|++++|......|..+..+++|++|++++|. +.....+..+..
T Consensus       396 ~~l~~L~~L~l~~n~-l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~  471 (606)
T 3vq2_A          396 MGLEELQHLDFQHST-LKRVTE--FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFAN  471 (606)
T ss_dssp             TTCTTCCEEECTTSE-EESTTT--TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTT
T ss_pred             cCCCCCCeeECCCCc-cCCccC--hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhcc
Confidence            345555555555542 222111  0112456777777777765544555566777778888877764 332112445567


Q ss_pred             cCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC
Q 016694          254 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV  333 (384)
Q Consensus       254 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~  333 (384)
                      +++|++|++++| .+..++..       ....+++|++|+++++ .++.+... .+..+++|++|++++|. ++.+|..+
T Consensus       472 l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~~~  540 (606)
T 3vq2_A          472 TTNLTFLDLSKC-QLEQISWG-------VFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKGIL  540 (606)
T ss_dssp             CTTCCEEECTTS-CCCEECTT-------TTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEESCG
T ss_pred             CCCCCEEECCCC-cCCccChh-------hhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccCHhH
Confidence            788888888875 34444322       1223788889999887 45554322 36678999999999985 77899887


Q ss_pred             cCCC-CCeeeccCCCC
Q 016694          334 VDAP-KLNKVKPTEEE  348 (384)
Q Consensus       334 ~~~~-~L~~l~i~~~~  348 (384)
                      ..++ +|+++++++|+
T Consensus       541 ~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          541 QHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             GGSCTTCCEEECCSCC
T ss_pred             hhhcccCcEEEccCCC
Confidence            7776 59999999983

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=2.3e-19  Score=179.51  Aligned_cols=59  Identities=12%  Similarity=0.057  Sum_probs=32.1

Q ss_pred             ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          286 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       286 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      +++|++|++++| .++.+... .+..+++|++|++++|......|..+..+++| ++++++|
T Consensus       475 l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          475 LGRLEILVLSFC-DLSSIDQH-AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             CCCccEEECCCC-ccCccChh-hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence            556666666654 34444322 24456666666666664333444445556666 6666665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=2.7e-19  Score=176.87  Aligned_cols=178  Identities=17%  Similarity=0.222  Sum_probs=94.1

Q ss_pred             ccCCccEEecccccccccccccccccccccccccEEeeccCccccccc---CCcccCCCcCEEEeecCCCCeeecccccc
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV---TPSWHLENLATLEVSKCHGLINVLTLSTS  251 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~l~~~~~~  251 (384)
                      .+++|+.|+++++.-...++.. ......+++|++|++++| .++.++   ..+..+++|++|++++| .++.+  +..+
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l--p~~~  406 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPM--PDSC  406 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCC--CSCC
T ss_pred             cCccccEEEccCCccccccccc-hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccC--Chhh
Confidence            3566777777665321111000 000134556666666654 233332   12445556666666655 24433  2233


Q ss_pred             cccCcccEEeecccccccEecccc----------cCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEec
Q 016694          252 ESLVNLGRMKIADCKMIEQIIQLQ----------VGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR  321 (384)
Q Consensus       252 ~~l~~L~~L~l~~c~~l~~~~~~~----------~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~  321 (384)
                      ..+++|++|++++|. +..++..-          ..........+++|++|+++++ +++.++.   ...+++|++|+++
T Consensus       407 ~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls  481 (549)
T 2z81_A          407 QWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKIS  481 (549)
T ss_dssp             CCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECC
T ss_pred             cccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC---cccCccCCEEecC
Confidence            444555555555532 22221100          0000000113788888888876 6666654   4568999999999


Q ss_pred             cCCCCCccCCC-CcCCCCCeeeccCCCCCCCCccccCCchH--HHHHHHHhh
Q 016694          322 QCPTMKIFSQG-VVDAPKLNKVKPTEEEDGDDEGCWEGNLN--DTIKKLFNE  370 (384)
Q Consensus       322 ~c~~l~~lp~~-~~~~~~L~~l~i~~~~~~~~~~~~~~~~~--~~i~~~~~~  370 (384)
                      +| .++.+|.+ +..+++|+++++++|       .|.++.+  ..++.+...
T Consensus       482 ~N-~l~~~~~~~~~~l~~L~~L~l~~N-------~~~~~~~~~~~l~~~l~~  525 (549)
T 2z81_A          482 RN-QLKSVPDGIFDRLTSLQKIWLHTN-------PWDCSCPRIDYLSRWLNK  525 (549)
T ss_dssp             SS-CCCCCCTTGGGGCTTCCEEECCSS-------CBCCCHHHHHHHHHHHHH
T ss_pred             CC-ccCCcCHHHHhcCcccCEEEecCC-------CccCCCccHHHHHHHHHh
Confidence            98 45555544 667899999999999       4566554  334445443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.85  E-value=1.5e-19  Score=175.22  Aligned_cols=292  Identities=13%  Similarity=0.210  Sum_probs=171.7

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|++|+++++ .+..+    ++ +..+++|++|++++| .+.+.++   ++++++|++|++++| .+.++++..   
T Consensus        66 ~l~~L~~L~Ls~n-~l~~~----~~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~---  131 (466)
T 1o6v_A           66 YLNNLTQINFSNN-QLTDI----TP-LKNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNN-QITDIDPLK---  131 (466)
T ss_dssp             GCTTCCEEECCSS-CCCCC----GG-GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGT---
T ss_pred             hhcCCCEEECCCC-ccCCc----hh-hhccccCCEEECCCC-ccccChh---hcCCCCCCEEECCCC-CCCCChHHc---
Confidence            4567777777777 45543    33 566677777777766 5555543   356666777776666 555554311   


Q ss_pred             ccccccCCcccccceeccCccccccccccC-----------------cccccCCCCceeEeeccCCCccccc----CCCe
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNF-----------------TENIIEMPELRYLAIENCPDMETFI----SNSV  141 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------------~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L  141 (384)
                              .+++|++|+++++. +..++..                 ......+++|+.|++++|. ++.++    .++|
T Consensus       132 --------~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L  201 (466)
T 1o6v_A          132 --------NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNL  201 (466)
T ss_dssp             --------TCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTC
T ss_pred             --------CCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCC
Confidence                    44555555554443 2221110                 0124567778888877764 33222    4567


Q ss_pred             eEEEecCCCCccccc-----cc---cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeec
Q 016694          142 VHVTTDNKEPEKLTS-----EE---NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKIS  213 (384)
Q Consensus       142 ~~L~i~~~~~~~~~~-----~~---~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~  213 (384)
                      ++|+++++.......     ..   .+..+ .+..+ ...+.+++|+.|+++++ .+..+.     ....+++|++|+++
T Consensus       202 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~l~  273 (466)
T 1o6v_A          202 ESLIATNNQISDITPLGILTNLDELSLNGN-QLKDI-GTLASLTNLTDLDLANN-QISNLA-----PLSGLTKLTELKLG  273 (466)
T ss_dssp             SEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCCCCG-----GGTTCTTCSEEECC
T ss_pred             CEEEecCCcccccccccccCCCCEEECCCC-Ccccc-hhhhcCCCCCEEECCCC-ccccch-----hhhcCCCCCEEECC
Confidence            777777665433211     00   00000 11111 12235677777777766 333321     13567778888887


Q ss_pred             cCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceee
Q 016694          214 ECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLG  293 (384)
Q Consensus       214 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~  293 (384)
                      ++ .+..++. +..+++|+.|++++|. ++.+..   +..+++|++|++++|. +..+..         ...+++|++|+
T Consensus       274 ~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~  337 (466)
T 1o6v_A          274 AN-QISNISP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-ISDISP---------VSSLTKLQRLF  337 (466)
T ss_dssp             SS-CCCCCGG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-CSCCGG---------GGGCTTCCEEE
T ss_pred             CC-ccCcccc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-CCCchh---------hccCccCCEeE
Confidence            76 3555544 6677888888888864 554422   4677888888888864 433321         12378899999


Q ss_pred             cccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694          294 LDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       294 l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                      +++| .++.+.   ....+++|++|++++|+.....|  +..+++|+.+++++|.
T Consensus       338 l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          338 FYNN-KVSDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             CCSS-CCCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred             CCCC-ccCCch---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence            9886 566653   26678999999999886544444  5668899999998873

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=2.5e-20  Score=172.39  Aligned_cols=230  Identities=21%  Similarity=0.249  Sum_probs=133.4

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      .+++.|+++++ +++.+++.  ++++++|++|++++| .+..++....          .+++|++|+++++. ++.+|. 
T Consensus        81 ~~l~~L~L~~n-~l~~lp~~--l~~l~~L~~L~L~~n-~l~~lp~~~~----------~l~~L~~L~Ls~n~-l~~lp~-  144 (328)
T 4fcg_A           81 PGRVALELRSV-PLPQFPDQ--AFRLSHLQHMTIDAA-GLMELPDTMQ----------QFAGLETLTLARNP-LRALPA-  144 (328)
T ss_dssp             TTCCEEEEESS-CCSSCCSC--GGGGTTCSEEEEESS-CCCCCCSCGG----------GGTTCSEEEEESCC-CCCCCG-
T ss_pred             cceeEEEccCC-CchhcChh--hhhCCCCCEEECCCC-CccchhHHHh----------ccCCCCEEECCCCc-cccCcH-
Confidence            45666666665 44544332  345666666666666 4554433221          45566666666554 444544 


Q ss_pred             cccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccccc
Q 016694          113 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH  192 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~  192 (384)
                        .+..+++|++|++++|.....+|.. +....+                       ...++.+++|+.|+++++ .+..
T Consensus       145 --~l~~l~~L~~L~L~~n~~~~~~p~~-~~~~~~-----------------------~~~~~~l~~L~~L~L~~n-~l~~  197 (328)
T 4fcg_A          145 --SIASLNRLRELSIRACPELTELPEP-LASTDA-----------------------SGEHQGLVNLQSLRLEWT-GIRS  197 (328)
T ss_dssp             --GGGGCTTCCEEEEEEETTCCCCCSC-SEEEC------------------------CCCEEESTTCCEEEEEEE-CCCC
T ss_pred             --HHhcCcCCCEEECCCCCCccccChh-Hhhccc-----------------------hhhhccCCCCCEEECcCC-CcCc
Confidence              4555666666666666554433211 000000                       001124677777777766 4444


Q ss_pred             ccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEec
Q 016694          193 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII  272 (384)
Q Consensus       193 l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~  272 (384)
                      ++..    ...+++|++|++++| .++.+|..+..+++|++|++++|+....+  +..+..+++|++|++++|.....++
T Consensus       198 lp~~----l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          198 LPAS----IANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             CCGG----GGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             chHh----hcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchhhcc
Confidence            3322    356677777777775 45566666777777788877777655554  4455677778888887776555443


Q ss_pred             ccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 016694          273 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ  322 (384)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~  322 (384)
                      ..        ...+++|++|++++|+.++.++.  .+..+++|+.+.+..
T Consensus       271 ~~--------~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          271 LD--------IHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP  310 (328)
T ss_dssp             TT--------GGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred             hh--------hhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence            22        12267788888888777777665  366777887777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=2.6e-19  Score=172.92  Aligned_cols=285  Identities=14%  Similarity=0.114  Sum_probs=167.7

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|++|+++++ .+..+    | .++.+++|++|++++| ++++++    ++.+++|++|++++| .+.+++  .   
T Consensus        40 ~l~~L~~L~Ls~n-~l~~~----~-~l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~--~---  102 (457)
T 3bz5_A           40 QLATLTSLDCHNS-SITDM----T-GIEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNLD--V---  102 (457)
T ss_dssp             HHTTCCEEECCSS-CCCCC----T-TGGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCCC--C---
T ss_pred             HcCCCCEEEccCC-CcccC----h-hhcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCceee--c---
Confidence            3577888888887 55554    4 4677888888888887 566653    357788888888887 666552  1   


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCC-cccc--c
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEP-EKLT--S  156 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~-~~~~--~  156 (384)
                         .    .+++|++|+++++. ++.++     +..+++|++|+++++. ++.++   .+.|++|+++.+.. ..++  .
T Consensus       103 ---~----~l~~L~~L~L~~N~-l~~l~-----~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~  168 (457)
T 3bz5_A          103 ---T----PLTKLTYLNCDTNK-LTKLD-----VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTP  168 (457)
T ss_dssp             ---T----TCTTCCEEECCSSC-CSCCC-----CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTT
T ss_pred             ---C----CCCcCCEEECCCCc-CCeec-----CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccccccccc
Confidence               1    56677777777664 44443     3456666666666542 33333   23455666555421 0000  0


Q ss_pred             --ccccc--ccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcC
Q 016694          157 --EENFF--LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLA  232 (384)
Q Consensus       157 --~~~~~--~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~  232 (384)
                        ....+  +...+..+.  .+.+++|+.|+++++ .+..+.      ...+++|+.|+++++ .++.+|  +..+++|+
T Consensus       169 l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N-~l~~~~------l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~  236 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD------LNQNIQLTFLDCSSN-KLTEID--VTPLTQLT  236 (457)
T ss_dssp             CTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSS-CCSCCC------CTTCTTCSEEECCSS-CCSCCC--CTTCTTCS
T ss_pred             CCcCCEEECCCCccceec--cccCCCCCEEECcCC-cCCeec------cccCCCCCEEECcCC-cccccC--ccccCCCC
Confidence              00000  000111111  235666777777665 344331      255678888888875 455564  66778888


Q ss_pred             EEEeecCCCCeeecccccccccCcccEEeec----------ccccccEecccccCccccceeeecccceeecccCCCCce
Q 016694          233 TLEVSKCHGLINVLTLSTSESLVNLGRMKIA----------DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTS  302 (384)
Q Consensus       233 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~----------~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~  302 (384)
                      .|+++++. ++.++    ...+++|+.|+++          +|..+..++.          ..+++|+.|++++|+.++.
T Consensus       237 ~L~l~~N~-l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----------~~l~~L~~L~Ls~n~~l~~  301 (457)
T 3bz5_A          237 YFDCSVNP-LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----------EGCRKIKELDVTHNTQLYL  301 (457)
T ss_dssp             EEECCSSC-CSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC----------TTCTTCCCCCCTTCTTCCE
T ss_pred             EEEeeCCc-CCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcccc----------cccccCCEEECCCCcccce
Confidence            88888764 55442    2345555554444          3333332221          1368899999988877666


Q ss_pred             ecCCC------cccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694          303 FCLGN------YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       303 l~~~~------~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                      ++...      .+..+++|++|++++| +++.++  +..+++|++++++++.
T Consensus       302 l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          302 LDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             EECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred             eccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence            54321      1345678888888876 455564  5668899999998884

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=1.4e-20  Score=189.39  Aligned_cols=324  Identities=12%  Similarity=0.153  Sum_probs=176.8

Q ss_pred             CCCCCCceEecCCCcCcce-----eccc---------CCCCCC--CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEE
Q 016694            2 IGFRDIKYLQLGHFPRLQE-----IWHG---------QALPVS--FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLE   65 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~-----i~~~---------~p~~i~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~   65 (384)
                      ..+++|++|+++++. +..     .|..         .|+.++  .+++|++|++++|. +.+..|.. ++++++|++|+
T Consensus       203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~  279 (636)
T 4eco_A          203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTF-LKALPEMQLIN  279 (636)
T ss_dssp             GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTT-TTTCSSCCEEE
T ss_pred             hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHH-HhcCCCCCEEE
Confidence            457899999999985 544     0100         288888  99999999999984 44443433 57899999999


Q ss_pred             EecccCcce--ecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----CC
Q 016694           66 VRNCDSLEE--VLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SN  139 (384)
Q Consensus        66 l~~~~~l~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~  139 (384)
                      +++|..+..  +|..........    .+++|++|+++++. ++.+|. ...+..+++|++|+++++..-..+|    .+
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~----~l~~L~~L~L~~n~-l~~ip~-~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~  353 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAP----VGEKIQIIYIGYNN-LKTFPV-ETSLQKMKKLGMLECLYNQLEGKLPAFGSEI  353 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSG----GGGTCCEEECCSSC-CSSCCC-HHHHTTCTTCCEEECCSCCCEEECCCCEEEE
T ss_pred             CcCCCCCccccchHHHHhhhccc----cCCCCCEEECCCCc-CCccCc-hhhhccCCCCCEEeCcCCcCccchhhhCCCC
Confidence            999932664  443221000001    24789999998886 555543 1246678888999888864322444    24


Q ss_pred             CeeEEEecCCCCccccccc-------cccc--cCCcccccCCccc--cCCccEEecccccccccccccccc----ccccc
Q 016694          140 SVVHVTTDNKEPEKLTSEE-------NFFL--TDQIQPLFDEKVA--FPQLRYLELSRLHKVQHLWKENDE----SNKAF  204 (384)
Q Consensus       140 ~L~~L~i~~~~~~~~~~~~-------~~~~--~~~l~~l~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~----~~~~~  204 (384)
                      +|++|.++++....++..+       ..+.  ...+..+....+.  +++|+.|+++++. +.......+.    ....+
T Consensus       354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~  432 (636)
T 4eco_A          354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKG  432 (636)
T ss_dssp             EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCC
T ss_pred             CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccC
Confidence            5777777766543332111       0000  0011122222222  2255555555542 2111000010    00134


Q ss_pred             ccccEEeeccCcccccccCCcc-cCCCcCEEEeecCCCCeeecccccc------cccCcccEEeecccccccEecccccC
Q 016694          205 ANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLSTS------ESLVNLGRMKIADCKMIEQIIQLQVG  277 (384)
Q Consensus       205 ~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~------~~l~~L~~L~l~~c~~l~~~~~~~~~  277 (384)
                      ++|++|+++++ .++.+|..+. .+++|++|+++++. ++.++.....      ..+++|++|+++++ .+..++.. ..
T Consensus       433 ~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~  508 (636)
T 4eco_A          433 INVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD-FR  508 (636)
T ss_dssp             CCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGG-GS
T ss_pred             CCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChh-hh
Confidence            46666666664 3445554433 35666666666653 4443211110      11226667777664 34433321 11


Q ss_pred             ccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEec------cCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          278 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR------QCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~------~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                           ...+++|++|+++++ .++.++.  ....+++|++|+++      ++...+.+|..+..+++|+++++++|
T Consensus       509 -----~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          509 -----ATTLPYLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             -----TTTCTTCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             -----hccCCCcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence                 012667777777764 4444432  35567777777774      34345566777767777777777777

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=7.3e-20  Score=188.37  Aligned_cols=301  Identities=13%  Similarity=0.082  Sum_probs=203.7

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcc-cCchhHHhcC-------CCCCEEEEecccCcce
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCL-------NNLRWLEVRNCDSLEE   74 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l-------~~L~~L~l~~~~~l~~   74 (384)
                      .+++|++|++++|.....+    |..++.+++|++|++++|..+++ ..|.. ++++       ++|++|++++| .+..
T Consensus       489 ~L~~L~~L~Ls~N~l~~~i----P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~  562 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQL----PDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEE  562 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSC----CGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCB
T ss_pred             cCCCCCEEECcCCCCCccC----hHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-cCCc
Confidence            6899999999999656666    88889999999999999854665 33433 3344       49999999999 7776


Q ss_pred             ecc--cccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCC-eeEEEe
Q 016694           75 VLH--LEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTT  146 (384)
Q Consensus        75 ~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~-L~~L~i  146 (384)
                      +|.  ...          .+++|++|+++++. ++.+|    ....+++|+.|+++++. ++.+|     .++ |++|.+
T Consensus       563 ip~~~~l~----------~L~~L~~L~Ls~N~-l~~lp----~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          563 FPASASLQ----------KMVKLGLLDCVHNK-VRHLE----AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGF  626 (876)
T ss_dssp             CCCHHHHT----------TCTTCCEEECTTSC-CCBCC----CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEEC
T ss_pred             cCChhhhh----------cCCCCCEEECCCCC-cccch----hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEEC
Confidence            655  222          67788888888876 44555    35667788888888764 33444     345 788888


Q ss_pred             cCCCCcccccccccccc----------CCc----ccccCCcc--ccCCccEEecccccccccccccccccccccccccEE
Q 016694          147 DNKEPEKLTSEENFFLT----------DQI----QPLFDEKV--AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRL  210 (384)
Q Consensus       147 ~~~~~~~~~~~~~~~~~----------~~l----~~l~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L  210 (384)
                      +++....++........          ..+    ..+....+  ..++|+.|+++++ .+..++...   ...+++|+.|
T Consensus       627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~---~~~l~~L~~L  702 (876)
T 4ecn_A          627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTEL---FATGSPISTI  702 (876)
T ss_dssp             CSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHH---HHTTCCCSEE
T ss_pred             cCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHH---HccCCCCCEE
Confidence            77766544432211110          011    11111111  2347888888887 444432220   1367899999


Q ss_pred             eeccCcccccccCCcccC--------CCcCEEEeecCCCCeeeccccccc--ccCcccEEeecccccccEecccccCccc
Q 016694          211 KISECSKLQKLVTPSWHL--------ENLATLEVSKCHGLINVLTLSTSE--SLVNLGRMKIADCKMIEQIIQLQVGEEA  280 (384)
Q Consensus       211 ~l~~~~~l~~l~~~~~~~--------~~L~~L~l~~c~~l~~l~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~  280 (384)
                      +++++ .+..+|......        ++|+.|++++| .++.+  +..+.  .+++|+.|++++|. +..++..      
T Consensus       703 ~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l--p~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------  771 (876)
T 4ecn_A          703 ILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL--SDDFRATTLPYLSNMDVSYNC-FSSFPTQ------  771 (876)
T ss_dssp             ECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC--CGGGSTTTCTTCCEEECCSSC-CSSCCCG------
T ss_pred             ECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccc--hHHhhhccCCCcCEEEeCCCC-CCccchh------
Confidence            99986 566777654432        38999999998 46655  34444  88999999999854 5444322      


Q ss_pred             cceeeecccceeecccCC-----C-CceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          281 KGCVVFEELGYLGLDCLP-----S-LTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       281 ~~~~~~~~L~~L~l~~c~-----~-L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                        ...+++|+.|++++++     + ...++  ..+..+++|++|++++|.. +.+|..+.  ++|+.+++++|
T Consensus       772 --l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N  837 (876)
T 4ecn_A          772 --PLNSSQLKAFGIRHQRDAEGNRILRQWP--TGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADN  837 (876)
T ss_dssp             --GGGCTTCCEEECCCCBCTTCCBCCCCCC--TTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSC
T ss_pred             --hhcCCCCCEEECCCCCCcccccccccCh--HHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCC
Confidence              2248999999997743     2 22332  2367799999999999865 89998764  69999999998

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=2.5e-19  Score=169.61  Aligned_cols=277  Identities=14%  Similarity=0.171  Sum_probs=199.3

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|++|+++++ .+..+   .+..+..+++|++|++++| .++..++.. ++++++|++|++++| .+..+++.... 
T Consensus        67 ~l~~L~~L~L~~n-~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~~~-  138 (390)
T 3o6n_A           67 SFRQVELLNLNDL-QIEEI---DTYAFAYAHTIQKLYMGFN-AIRYLPPHV-FQNVPLLTVLVLERN-DLSSLPRGIFH-  138 (390)
T ss_dssp             HCCCCSEEECTTS-CCCEE---CTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT-
T ss_pred             ccccCcEEECCCC-ccccc---ChhhccCCCCcCEEECCCC-CCCcCCHHH-hcCCCCCCEEECCCC-ccCcCCHHHhc-
Confidence            5789999999999 57665   1346788999999999998 677775543 578999999999999 88887765432 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCccccc--c
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTS--E  157 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~--~  157 (384)
                              .+++|++|+++++. ++.++.  .....+++|++|+++++. ++..+   +++|+++.++++....++.  .
T Consensus       139 --------~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  206 (390)
T 3o6n_A          139 --------NTPKLTTLSMSNNN-LERIED--DTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIA  206 (390)
T ss_dssp             --------TCTTCCEEECCSSC-CCBCCT--TTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEECCSS
T ss_pred             --------CCCCCcEEECCCCc-cCccCh--hhccCCCCCCEEECCCCc-CCccccccccccceeecccccccccCCCCc
Confidence                    68899999999886 555543  245678999999998864 44333   5678888887766544321  1


Q ss_pred             ccccc--cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEE
Q 016694          158 ENFFL--TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLE  235 (384)
Q Consensus       158 ~~~~~--~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~  235 (384)
                      ...+.  ...+..+..  +..++|+.|+++++ .+...     +....+++|++|+++++..-...|..+..+++|++|+
T Consensus       207 L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          207 VEELDASHNSINVVRG--PVNVELTILKLQHN-NLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             CSEEECCSSCCCEEEC--CCCSSCCEEECCSS-CCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             ceEEECCCCeeeeccc--cccccccEEECCCC-CCccc-----HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence            11111  112222211  24678999999988 44443     2247789999999999854444466778899999999


Q ss_pred             eecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCc
Q 016694          236 VSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSL  315 (384)
Q Consensus       236 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L  315 (384)
                      ++++. ++.+  +.....+++|++|++++| .+..++..        ...+++|++|++++++ ++.++    ...+++|
T Consensus       279 L~~n~-l~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~--------~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L  341 (390)
T 3o6n_A          279 ISNNR-LVAL--NLYGQPIPTLKVLDLSHN-HLLHVERN--------QPQFDRLENLYLDHNS-IVTLK----LSTHHTL  341 (390)
T ss_dssp             CCSSC-CCEE--ECSSSCCTTCCEEECCSS-CCCCCGGG--------HHHHTTCSEEECCSSC-CCCCC----CCTTCCC
T ss_pred             CCCCc-Cccc--CcccCCCCCCCEEECCCC-cceecCcc--------ccccCcCCEEECCCCc-cceeC----chhhccC
Confidence            99974 6666  344567899999999996 45544322        2238999999999864 66664    4568999


Q ss_pred             cEEEeccCC
Q 016694          316 EHVVVRQCP  324 (384)
Q Consensus       316 ~~L~l~~c~  324 (384)
                      ++|++++++
T Consensus       342 ~~L~l~~N~  350 (390)
T 3o6n_A          342 KNLTLSHND  350 (390)
T ss_dssp             SEEECCSSC
T ss_pred             CEEEcCCCC
Confidence            999999985

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=1.1e-19  Score=182.86  Aligned_cols=302  Identities=10%  Similarity=0.061  Sum_probs=201.4

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcc-cCchhHHhcC------CCCCEEEEecccCccee
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCL------NNLRWLEVRNCDSLEEV   75 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l------~~L~~L~l~~~~~l~~~   75 (384)
                      .+++|++|++++|.....+    |+.++.+++|++|++++|..+++ ..|.. ++.+      ++|++|++++| .+..+
T Consensus       247 ~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~i  320 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKL----PTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTF  320 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSC----CTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSC
T ss_pred             ccCCCCEEEecCCcCCccC----hHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC-cCCcc
Confidence            6899999999999655566    88899999999999999954775 33443 3454      89999999999 77766


Q ss_pred             cc--cccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCC-eeEEEec
Q 016694           76 LH--LEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTTD  147 (384)
Q Consensus        76 ~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~-L~~L~i~  147 (384)
                      +.  ...          .+++|++|+++++..-..+|    ....+++|++|+++++. ++.+|     .+. |++|+++
T Consensus       321 p~~~~l~----------~l~~L~~L~L~~N~l~g~ip----~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls  385 (636)
T 4eco_A          321 PVETSLQ----------KMKKLGMLECLYNQLEGKLP----AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFA  385 (636)
T ss_dssp             CCHHHHT----------TCTTCCEEECCSCCCEEECC----CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECC
T ss_pred             Cchhhhc----------cCCCCCEEeCcCCcCccchh----hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEcc
Confidence            54  222          56777777777765222444    23445666666666642 33333     234 6666666


Q ss_pred             CCCCccccccccccccC----------Cccc-ccCCcc-------ccCCccEEecccccccccccccccccccccccccE
Q 016694          148 NKEPEKLTSEENFFLTD----------QIQP-LFDEKV-------AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIR  209 (384)
Q Consensus       148 ~~~~~~~~~~~~~~~~~----------~l~~-l~~~~~-------~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~  209 (384)
                      ++....++..+....+.          .+.. ++..++       .+++|+.|+++++ .+..++...   ...+++|++
T Consensus       386 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~---~~~l~~L~~  461 (636)
T 4eco_A          386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKEL---FSTGSPLSS  461 (636)
T ss_dssp             SSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH---HHTTCCCSE
T ss_pred             CCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHH---HccCCCCCE
Confidence            66555444321111100          1111 111122       4679999999987 455543321   145789999


Q ss_pred             EeeccCcccccccCCcccC--------CCcCEEEeecCCCCeeeccccccc--ccCcccEEeecccccccEecccccCcc
Q 016694          210 LKISECSKLQKLVTPSWHL--------ENLATLEVSKCHGLINVLTLSTSE--SLVNLGRMKIADCKMIEQIIQLQVGEE  279 (384)
Q Consensus       210 L~l~~~~~l~~l~~~~~~~--------~~L~~L~l~~c~~l~~l~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~  279 (384)
                      |+++++. ++.+|......        ++|+.|+++++. ++.+  +..+.  .+++|++|+++++. +..++..     
T Consensus       462 L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l--p~~~~~~~l~~L~~L~Ls~N~-l~~ip~~-----  531 (636)
T 4eco_A          462 INLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKL--SDDFRATTLPYLVGIDLSYNS-FSKFPTQ-----  531 (636)
T ss_dssp             EECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBC--CGGGSTTTCTTCCEEECCSSC-CSSCCCG-----
T ss_pred             EECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CCcc--ChhhhhccCCCcCEEECCCCC-CCCcChh-----
Confidence            9999974 66777654432        289999999975 6665  34444  89999999999954 5544322     


Q ss_pred             ccceeeecccceeecccCC------CCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          280 AKGCVVFEELGYLGLDCLP------SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       280 ~~~~~~~~~L~~L~l~~c~------~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                         ...+++|++|+++++.      -...++.  .+..+++|++|++++|.. +.+|..+.  ++|+++++++|
T Consensus       532 ---~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N  597 (636)
T 4eco_A          532 ---PLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDN  597 (636)
T ss_dssp             ---GGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSC
T ss_pred             ---hhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCC
Confidence               2238999999996543      2333332  367899999999999865 89998764  89999999999

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=3.9e-19  Score=172.37  Aligned_cols=285  Identities=15%  Similarity=0.254  Sum_probs=171.0

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +++++.|++.++ .+..+    | .+..+++|++|++++| .+++.++   ++++++|++|++++| .+..+++..    
T Consensus        45 l~~l~~L~l~~~-~i~~l----~-~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~----  109 (466)
T 1o6v_A           45 LDQVTTLQADRL-GIKSI----D-GVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADITPLA----  109 (466)
T ss_dssp             HHTCCEEECCSS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGT----
T ss_pred             hccccEEecCCC-CCccC----c-chhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCC-ccccChhhc----
Confidence            578999999998 56654    4 3678999999999998 7787755   579999999999999 787776522    


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----CCCeeEEE--------------
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVT--------------  145 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~--------------  145 (384)
                             .+++|++|+++++. ++.++.    ...+++|++|++++|. ++.++    .++|++|.              
T Consensus       110 -------~l~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  176 (466)
T 1o6v_A          110 -------NLTNLTGLTLFNNQ-ITDIDP----LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANL  176 (466)
T ss_dssp             -------TCTTCCEEECCSSC-CCCCGG----GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred             -------CCCCCCEEECCCCC-CCCChH----HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccC
Confidence                   78999999999886 665543    5678889999888763 22221    23444444              


Q ss_pred             -------ecCCCCccccccccccccCC----------cccccCCccccCCccEEeccccccccccccccccccccccccc
Q 016694          146 -------TDNKEPEKLTSEENFFLTDQ----------IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI  208 (384)
Q Consensus       146 -------i~~~~~~~~~~~~~~~~~~~----------l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~  208 (384)
                             ++++....++.   +..+..          +..+.+ .+.+++|+.|+++++ .+..+     +....+++|+
T Consensus       177 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~-----~~l~~l~~L~  246 (466)
T 1o6v_A          177 TTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDI-----GTLASLTNLT  246 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCC-----GGGGGCTTCS
T ss_pred             CCCCEEECcCCcCCCChh---hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCC-Ccccc-----hhhhcCCCCC
Confidence                   44433221110   000000          001100 123344444444443 22221     1124455566


Q ss_pred             EEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecc
Q 016694          209 RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEE  288 (384)
Q Consensus       209 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  288 (384)
                      +|++++|. +..+++ +..+++|+.|+++++. +..+.  . +..+++|++|++++|. +..+..         ...+++
T Consensus       247 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~  310 (466)
T 1o6v_A          247 DLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNIS--P-LAGLTALTNLELNENQ-LEDISP---------ISNLKN  310 (466)
T ss_dssp             EEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSSC-CSCCGG---------GGGCTT
T ss_pred             EEECCCCc-cccchh-hhcCCCCCEEECCCCc-cCccc--c-ccCCCccCeEEcCCCc-ccCchh---------hcCCCC
Confidence            66666543 333322 4556666666666653 33331  1 4456666777776643 332221         223677


Q ss_pred             cceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694          289 LGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       289 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                      |+.|+++++ .++....   ...+++|++|++++| .++.++ .+..+++|+.+++++|.
T Consensus       311 L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          311 LTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             CSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             CCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence            888888776 3444432   456788888888887 455554 45567888888888873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.83  E-value=5e-19  Score=172.02  Aligned_cols=288  Identities=14%  Similarity=0.082  Sum_probs=208.5

Q ss_pred             ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694            8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   87 (384)
                      +.++..+. .+..+    |..+  .+++++|++++| +++.+++.. +.++++|++|++++| .+..+.+....      
T Consensus        14 ~~v~c~~~-~l~~i----p~~~--~~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~------   77 (477)
T 2id5_A           14 RAVLCHRK-RFVAV----PEGI--PTETRLLDLGKN-RIKTLNQDE-FASFPHLEELELNEN-IVSAVEPGAFN------   77 (477)
T ss_dssp             TEEECCSC-CCSSC----CSCC--CTTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTT------
T ss_pred             CEEEeCCC-CcCcC----CCCC--CCCCcEEECCCC-ccceECHhH-ccCCCCCCEEECCCC-ccCEeChhhhh------
Confidence            34555544 45555    6543  469999999998 778875544 578999999999999 88888655533      


Q ss_pred             cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCccccccccccc
Q 016694           88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFL  162 (384)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~~~~~~~~~~  162 (384)
                         .+++|++|+++++. ++.++.  .....+++|++|+++++......+     .++|++|+++++......       
T Consensus        78 ---~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------  144 (477)
T 2id5_A           78 ---NLFNLRTLGLRSNR-LKLIPL--GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-------  144 (477)
T ss_dssp             ---TCTTCCEEECCSSC-CCSCCT--TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-------
T ss_pred             ---CCccCCEEECCCCc-CCccCc--ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC-------
Confidence               78999999999886 677765  234678999999999975332222     467999999876532211       


Q ss_pred             cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeecCCC
Q 016694          163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCHG  241 (384)
Q Consensus       163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~  241 (384)
                             ...++.+++|++|+++++ .+..++...   ...+++|+.|+++++. +..+ +..+..+++|+.|++++|+.
T Consensus       145 -------~~~~~~l~~L~~L~l~~n-~l~~~~~~~---l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          145 -------HRAFSGLNSLEQLTLEKC-NLTSIPTEA---LSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             -------TTSSTTCTTCCEEEEESC-CCSSCCHHH---HTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             -------hhhccCCCCCCEEECCCC-cCcccChhH---hcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCcc
Confidence                   112337899999999988 555543221   3578999999999975 4444 34677899999999999988


Q ss_pred             CeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEec
Q 016694          242 LINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR  321 (384)
Q Consensus       242 l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~  321 (384)
                      +..++.  ......+|++|++++| .+..++..       ....+++|+.|+++++ .++.+... .+..+++|++|+++
T Consensus       213 ~~~~~~--~~~~~~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~  280 (477)
T 2id5_A          213 LDTMTP--NCLYGLNLTSLSITHC-NLTAVPYL-------AVRHLVYLRFLNLSYN-PISTIEGS-MLHELLRLQEIQLV  280 (477)
T ss_dssp             CCEECT--TTTTTCCCSEEEEESS-CCCSCCHH-------HHTTCTTCCEEECCSS-CCCEECTT-SCTTCTTCCEEECC
T ss_pred             ccccCc--ccccCccccEEECcCC-cccccCHH-------HhcCccccCeeECCCC-cCCccChh-hccccccCCEEECC
Confidence            877733  3344569999999996 45544421       1223889999999986 46776543 36789999999999


Q ss_pred             cCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694          322 QCPTMKIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       322 ~c~~l~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                      +|..-...|..+..+++|+++++++|.
T Consensus       281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          281 GGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             SSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             CCccceECHHHhcCcccCCEEECCCCc
Confidence            986444456677789999999999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=1.5e-19  Score=167.09  Aligned_cols=228  Identities=16%  Similarity=0.190  Sum_probs=180.3

Q ss_pred             cCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccc
Q 016694           57 CLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF  136 (384)
Q Consensus        57 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  136 (384)
                      ..+++++|+++++ .+..+++...          .+++|++|+++++. ++.+|.   .+..+++|++|+++++. ++.+
T Consensus        79 ~~~~l~~L~L~~n-~l~~lp~~l~----------~l~~L~~L~L~~n~-l~~lp~---~~~~l~~L~~L~Ls~n~-l~~l  142 (328)
T 4fcg_A           79 TQPGRVALELRSV-PLPQFPDQAF----------RLSHLQHMTIDAAG-LMELPD---TMQQFAGLETLTLARNP-LRAL  142 (328)
T ss_dssp             TSTTCCEEEEESS-CCSSCCSCGG----------GGTTCSEEEEESSC-CCCCCS---CGGGGTTCSEEEEESCC-CCCC
T ss_pred             cccceeEEEccCC-CchhcChhhh----------hCCCCCEEECCCCC-ccchhH---HHhccCCCCEEECCCCc-cccC
Confidence            4589999999999 8887766543          68899999999887 557776   67789999999999863 3222


Q ss_pred             cCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccccccccccc-----ccccccccccEEe
Q 016694          137 ISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND-----ESNKAFANLIRLK  211 (384)
Q Consensus       137 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-----~~~~~~~~L~~L~  211 (384)
                                                       ...++.+++|+.|++++|..+..++..-.     .....+++|++|+
T Consensus       143 ---------------------------------p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~  189 (328)
T 4fcg_A          143 ---------------------------------PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR  189 (328)
T ss_dssp             ---------------------------------CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE
T ss_pred             ---------------------------------cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE
Confidence                                             22233788999999999876666543210     0023589999999


Q ss_pred             eccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccce
Q 016694          212 ISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGY  291 (384)
Q Consensus       212 l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~  291 (384)
                      ++++ .++.+|..+..+++|++|++++|. ++.+  +..+..+++|++|++++|.....++..        ...+++|++
T Consensus       190 L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l--~~~l~~l~~L~~L~Ls~n~~~~~~p~~--------~~~l~~L~~  257 (328)
T 4fcg_A          190 LEWT-GIRSLPASIANLQNLKSLKIRNSP-LSAL--GPAIHHLPKLEELDLRGCTALRNYPPI--------FGGRAPLKR  257 (328)
T ss_dssp             EEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCC--CGGGGGCTTCCEEECTTCTTCCBCCCC--------TTCCCCCCE
T ss_pred             CcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcC--chhhccCCCCCEEECcCCcchhhhHHH--------hcCCCCCCE
Confidence            9996 577898889999999999999975 6655  445678999999999998766554432        223899999


Q ss_pred             eecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          292 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       292 L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      |++++|..++.++.  .+..+++|++|++++|+.++.+|..+..+++++.+.+..+
T Consensus       258 L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          258 LILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             EECTTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             EECCCCCchhhcch--hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            99999988888765  3778999999999999999999999999999999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=2.4e-19  Score=179.11  Aligned_cols=279  Identities=14%  Similarity=0.137  Sum_probs=192.5

Q ss_pred             CCCCceEecCCCcCcceecccCCCC-CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALP-VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~-i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      +.+++.|++.++ .+..+    |+. +..+++|++|++++| .++++++.. ++.+++|++|++++| .+..+++.... 
T Consensus        50 l~~l~~l~l~~~-~l~~l----p~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~-  120 (597)
T 3oja_B           50 LNNQKIVTFKNS-TMRKL----PAALLDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQ-  120 (597)
T ss_dssp             GCCCSEEEESSC-EESEE----CTHHHHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT-
T ss_pred             CCCceEEEeeCC-CCCCc----CHHHHccCCCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCC-cCCCCCHHHHc-
Confidence            466777777777 45555    443 356778888888877 566665433 457788888888887 67766654432 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCccccc
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTS  156 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~  156 (384)
                              .+++|++|+++++. ++.++.  .....+++|++|++++|. ++.++      .++|++|.++++....+  
T Consensus       121 --------~l~~L~~L~L~~n~-l~~l~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--  186 (597)
T 3oja_B          121 --------NVPLLTVLVLERND-LSSLPR--GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV--  186 (597)
T ss_dssp             --------TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC--
T ss_pred             --------CCCCCCEEEeeCCC-CCCCCH--HHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc--
Confidence                    67788888888775 556654  123567788888887763 33322      34577777776553211  


Q ss_pred             cccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEe
Q 016694          157 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV  236 (384)
Q Consensus       157 ~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  236 (384)
                                     ..+.+++|+.|+++++ .+..+        ...++|+.|+++++ .+..++..  ..++|+.|++
T Consensus       187 ---------------~~~~l~~L~~L~l~~n-~l~~l--------~~~~~L~~L~ls~n-~l~~~~~~--~~~~L~~L~L  239 (597)
T 3oja_B          187 ---------------DLSLIPSLFHANVSYN-LLSTL--------AIPIAVEELDASHN-SINVVRGP--VNVELTILKL  239 (597)
T ss_dssp             ---------------CGGGCTTCSEEECCSS-CCSEE--------ECCTTCSEEECCSS-CCCEEECS--CCSCCCEEEC
T ss_pred             ---------------ChhhhhhhhhhhcccC-ccccc--------cCCchhheeeccCC-cccccccc--cCCCCCEEEC
Confidence                           1225777888888776 33332        34567899999886 46656443  3468999999


Q ss_pred             ecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCcc
Q 016694          237 SKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLE  316 (384)
Q Consensus       237 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~  316 (384)
                      +++. ++.   +..+..+++|+.|+++++. +..++..       ....+++|+.|+++++ .++.++.  ....+++|+
T Consensus       240 ~~n~-l~~---~~~l~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~  304 (597)
T 3oja_B          240 QHNN-LTD---TAWLLNYPGLVEVDLSYNE-LEKIMYH-------PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLK  304 (597)
T ss_dssp             CSSC-CCC---CGGGGGCTTCSEEECCSSC-CCEEESG-------GGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCC
T ss_pred             CCCC-CCC---ChhhccCCCCCEEECCCCc-cCCCCHH-------HhcCccCCCEEECCCC-CCCCCCc--ccccCCCCc
Confidence            9975 544   3556789999999999954 5555332       1223899999999985 6777755  255689999


Q ss_pred             EEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694          317 HVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       317 ~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                      +|++++| .++.+|..+..+++|++|++++|.
T Consensus       305 ~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          305 VLDLSHN-HLLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             EEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             EEECCCC-CCCccCcccccCCCCCEEECCCCC
Confidence            9999998 566888887789999999999986

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=5.9e-19  Score=175.16  Aligned_cols=232  Identities=16%  Similarity=0.149  Sum_probs=146.7

Q ss_pred             cccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCcccccc-----c---c
Q 016694           91 LFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSE-----E---N  159 (384)
Q Consensus        91 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~-----~---~  159 (384)
                      .+++|++|++.++. ++.++.   ....+ +|++|++++|. ++.+|   .++|++|.+.++........     .   .
T Consensus       280 ~l~~L~~L~l~~~~-l~~l~~---~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~  353 (570)
T 2z63_A          280 CLTNVSSFSLVSVT-IERVKD---FSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD  353 (570)
T ss_dssp             GGTTCSEEEEESCE-ECSCCB---CCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred             CcCcccEEEecCcc-chhhhh---hhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCCEEe
Confidence            35889999998886 566665   44555 88888888764 33443   45677777776543221100     0   0


Q ss_pred             ccccCCcccc---cCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccccc-CCcccCCCcCEEE
Q 016694          160 FFLTDQIQPL---FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLE  235 (384)
Q Consensus       160 ~~~~~~l~~l---~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~  235 (384)
                      +..+ .+...   ....+.+++|+.|+++++ .+..++..    ...+++|++|+++++......+ ..+..+++|++|+
T Consensus       354 l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  427 (570)
T 2z63_A          354 LSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  427 (570)
T ss_dssp             CCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE----EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred             CcCC-ccCccccccccccccCccCEEECCCC-cccccccc----ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence            0000 01110   111224667777777766 33332221    3567888888888865333333 2467888999999


Q ss_pred             eecCCCCeeecccccccccCcccEEeecccccc-cEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCC
Q 016694          236 VSKCHGLINVLTLSTSESLVNLGRMKIADCKMI-EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPS  314 (384)
Q Consensus       236 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~  314 (384)
                      +++|. +.... +..+..+++|++|++++|... ..++.        ....+++|++|++++| .++.+... .+..+++
T Consensus       428 l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~--------~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~  495 (570)
T 2z63_A          428 ISHTH-TRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPD--------IFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSS  495 (570)
T ss_dssp             CTTSC-CEECC-TTTTTTCTTCCEEECTTCEEGGGEECS--------CCTTCTTCCEEECTTS-CCCEECTT-TTTTCTT
T ss_pred             CcCCc-ccccc-hhhhhcCCcCcEEECcCCcCccccchh--------hhhcccCCCEEECCCC-ccccCChh-hhhcccC
Confidence            99875 44432 445677899999999987532 12321        1223889999999987 56666332 3667999


Q ss_pred             ccEEEeccCCCCCccCC-CCcCCCCCeeeccCCC
Q 016694          315 LEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE  347 (384)
Q Consensus       315 L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~i~~~  347 (384)
                      |++|++++|. ++.+|. .+..+++|+++++++|
T Consensus       496 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          496 LQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCC
Confidence            9999999984 555554 4567899999999998

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=1.6e-19  Score=178.48  Aligned_cols=129  Identities=17%  Similarity=0.144  Sum_probs=72.1

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|++|+++++ .+..+   .|..+..+++|++|++++| ++++.++.. ++++++|++|++++| .+.++++....   
T Consensus        26 ~~L~~L~Ls~n-~l~~~---~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~---   95 (549)
T 2z81_A           26 AAMKSLDLSFN-KITYI---GHGDLRACANLQVLILKSS-RINTIEGDA-FYSLGSLEHLDLSDN-HLSSLSSSWFG---   95 (549)
T ss_dssp             TTCCEEECCSS-CCCEE---CSSTTSSCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCSCCHHHHT---
T ss_pred             CCccEEECcCC-ccCcc---ChhhhhcCCcccEEECCCC-CcCccChhh-ccccccCCEEECCCC-ccCccCHHHhc---
Confidence            46777777777 35443   1345666777777777776 556554433 356777777777777 56655544221   


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCC
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEP  151 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~  151 (384)
                            .+++|++|+++++. ++.++. ......+++|++|+++++..++.++      .++|++|+++++..
T Consensus        96 ------~l~~L~~L~Ls~n~-l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           96 ------PLSSLKYLNLMGNP-YQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             ------TCTTCCEEECTTCC-CSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             ------cCCCCcEEECCCCc-ccccch-hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence                  55666666666664 332211 1134556666666666655443332      23455565555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=1.1e-18  Score=173.25  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=71.6

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|++|+++++ .+..+   .|..+..+++|++|++++| +++++++.. ++++++|++|++++| .++.++..      
T Consensus        52 ~~L~~L~Ls~N-~i~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~------  118 (562)
T 3a79_B           52 PRTKALSLSQN-SISEL---RMPDISFLSELRVLRLSHN-RIRSLDFHV-FLFNQDLEYLDVSHN-RLQNISCC------  118 (562)
T ss_dssp             TTCCEEECCSS-CCCCC---CGGGTTTCTTCCEEECCSC-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECSC------
T ss_pred             CCcCEEECCCC-Ccccc---ChhhhccCCCccEEECCCC-CCCcCCHHH-hCCCCCCCEEECCCC-cCCccCcc------
Confidence            67888888888 45554   1346778888888888887 677765543 467888888888888 67766542      


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                            .+++|++|+++++. ++.++. ......+++|++|+++++
T Consensus       119 ------~l~~L~~L~Ls~N~-l~~l~~-p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B          119 ------PMASLRHLDLSFND-FDVLPV-CKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             ------CCTTCSEEECCSSC-CSBCCC-CGGGGGCTTCCEEEEECS
T ss_pred             ------ccccCCEEECCCCC-ccccCc-hHhhcccCcccEEecCCC
Confidence                  35677777777766 444432 124556677777777664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=4.4e-19  Score=182.61  Aligned_cols=323  Identities=13%  Similarity=0.126  Sum_probs=194.3

Q ss_pred             CCCCCCceEecCCCcCcce-----eccc---------CCCCCC--CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEE
Q 016694            2 IGFRDIKYLQLGHFPRLQE-----IWHG---------QALPVS--FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLE   65 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~-----i~~~---------~p~~i~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~   65 (384)
                      ..+++|++|+++++. +..     .|..         .|+.++  .+++|++|++++|.....+ |.. ++++++|++|+
T Consensus       445 ~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~-l~~L~~L~~L~  521 (876)
T 4ecn_A          445 QRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDF-LYDLPELQSLN  521 (876)
T ss_dssp             GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-CGG-GGGCSSCCEEE
T ss_pred             hcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC-hHH-HhCCCCCCEEE
Confidence            467899999999995 443     0110         288888  9999999999999544444 433 67999999999


Q ss_pred             EecccCcce--ecccccccc-cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----C
Q 016694           66 VRNCDSLEE--VLHLEELNA-DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----S  138 (384)
Q Consensus        66 l~~~~~l~~--~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~  138 (384)
                      +++|..+..  +|....... ...    .+++|++|+++++. ++.+|. ...+..+++|+.|+++++. ++.+|    .
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~----~l~~L~~L~Ls~N~-L~~ip~-~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L  594 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDED----TGPKIQIFYMGYNN-LEEFPA-SASLQKMVKLGLLDCVHNK-VRHLEAFGTN  594 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTT----TTTTCCEEECCSSC-CCBCCC-HHHHTTCTTCCEEECTTSC-CCBCCCCCTT
T ss_pred             CcCCCCcccccchHHHHhhhhccc----ccCCccEEEeeCCc-CCccCC-hhhhhcCCCCCEEECCCCC-cccchhhcCC
Confidence            999942664  443221100 112    56799999999987 555553 1246789999999999975 44554    3


Q ss_pred             CCeeEEEecCCCCcccccccc-------cc--ccCCcccccCCcccc--CCccEEecccccccccccccccc-cc--ccc
Q 016694          139 NSVVHVTTDNKEPEKLTSEEN-------FF--LTDQIQPLFDEKVAF--PQLRYLELSRLHKVQHLWKENDE-SN--KAF  204 (384)
Q Consensus       139 ~~L~~L~i~~~~~~~~~~~~~-------~~--~~~~l~~l~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~-~~--~~~  204 (384)
                      ++|++|+++++....++..+.       .+  +...+..+....+..  ++|+.|+++++.--..++.  ++ ..  ..+
T Consensus       595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~--l~~~l~~~~~  672 (876)
T 4ecn_A          595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN--ISCSMDDYKG  672 (876)
T ss_dssp             SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS--CSSCTTTCCC
T ss_pred             CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc--chhhhccccC
Confidence            568999999877554332110       00  000122222222222  2255555555421111100  00 00  123


Q ss_pred             ccccEEeeccCcccccccCCcc-cCCCcCEEEeecCCCCeeeccccc------ccccCcccEEeecccccccEecccccC
Q 016694          205 ANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLST------SESLVNLGRMKIADCKMIEQIIQLQVG  277 (384)
Q Consensus       205 ~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~------~~~l~~L~~L~l~~c~~l~~~~~~~~~  277 (384)
                      ++|+.|++++| .+..+|..+. .+++|+.|+++++ .+..++....      ...+++|+.|++++| .+..++.. ..
T Consensus       673 ~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~-l~  748 (876)
T 4ecn_A          673 INASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD-FR  748 (876)
T ss_dssp             CCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG-GS
T ss_pred             CCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHH-hh
Confidence            46777777765 3455655443 5677788887776 3554422111      112337888888775 34444322 11


Q ss_pred             ccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc------CCCCCccCCCCcCCCCCeeeccCCCC
Q 016694          278 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ------CPTMKIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~------c~~l~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                           ...+++|+.|+++++ .++.++.  ....+++|+.|++++      |.....+|..+..+++|+.|++++|.
T Consensus       749 -----~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          749 -----ATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             -----TTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             -----hccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence                 013778888888775 4555533  366788888888866      44455778777778888888888884

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=1.4e-18  Score=170.73  Aligned_cols=153  Identities=13%  Similarity=0.127  Sum_probs=98.0

Q ss_pred             ccCCccEEecccccccccccccccccccccccccEEeeccCcccc--cccCCcccCCCcCEEEeecCCCCee-ecccccc
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ--KLVTPSWHLENLATLEVSKCHGLIN-VLTLSTS  251 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~  251 (384)
                      .+++|++|+++++ .+......   ....+++|++|+++++..-.  .+|..+..+++|++|+++++. +.. ++ ...+
T Consensus       322 ~l~~L~~L~Ls~n-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~-~~~~  395 (520)
T 2z7x_B          322 KISPFLHLDFSNN-LLTDTVFE---NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEK-KGDC  395 (520)
T ss_dssp             SCCCCCEEECCSS-CCCTTTTT---TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGG-GCSC
T ss_pred             hCCcccEEEeECC-ccChhhhh---hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccc-cchh
Confidence            5666777777666 23321111   12456777777777754221  344445667777777777764 443 32 2234


Q ss_pred             cccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCC
Q 016694          252 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ  331 (384)
Q Consensus       252 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~  331 (384)
                      ..+++|++|++++|.-...++..          ..++|++|+++++ +++.++.  ....+++|++|++++| .++.+|.
T Consensus       396 ~~l~~L~~L~Ls~N~l~~~~~~~----------l~~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~  461 (520)
T 2z7x_B          396 SWTKSLLSLNMSSNILTDTIFRC----------LPPRIKVLDLHSN-KIKSIPK--QVVKLEALQELNVASN-QLKSVPD  461 (520)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGGS----------CCTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSS-CCCCCCT
T ss_pred             ccCccCCEEECcCCCCCcchhhh----------hcccCCEEECCCC-cccccch--hhhcCCCCCEEECCCC-cCCccCH
Confidence            56677777777775422222211          1268999999886 6666654  3558999999999998 5778988


Q ss_pred             C-CcCCCCCeeeccCCC
Q 016694          332 G-VVDAPKLNKVKPTEE  347 (384)
Q Consensus       332 ~-~~~~~~L~~l~i~~~  347 (384)
                      . +..+++|+++++++|
T Consensus       462 ~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          462 GIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             TTTTTCTTCCEEECCSS
T ss_pred             HHhccCCcccEEECcCC
Confidence            7 667899999999998

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.82  E-value=9.4e-19  Score=168.98  Aligned_cols=275  Identities=16%  Similarity=0.120  Sum_probs=175.1

Q ss_pred             CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccc
Q 016694           28 PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLK  107 (384)
Q Consensus        28 ~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  107 (384)
                      +++.+++|++|++++| .+++.+ .  ++.+++|++|++++| .+.+++  .      .    .+++|++|+++++. ++
T Consensus        37 ~~~~l~~L~~L~Ls~n-~l~~~~-~--l~~l~~L~~L~Ls~n-~l~~~~--~------~----~l~~L~~L~Ls~N~-l~   98 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNS-SITDMT-G--IEKLTGLTKLICTSN-NITTLD--L------S----QNTNLTYLACDSNK-LT   98 (457)
T ss_dssp             EHHHHTTCCEEECCSS-CCCCCT-T--GGGCTTCSEEECCSS-CCSCCC--C------T----TCTTCSEEECCSSC-CS
T ss_pred             ChhHcCCCCEEEccCC-CcccCh-h--hcccCCCCEEEccCC-cCCeEc--c------c----cCCCCCEEECcCCC-Cc
Confidence            4567899999999998 778774 2  579999999999999 787763  1      1    78899999999987 66


Q ss_pred             ccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCcccc--c-----cccccccCCcccccCCccccC
Q 016694          108 RFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLT--S-----EENFFLTDQIQPLFDEKVAFP  177 (384)
Q Consensus       108 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~--~-----~~~~~~~~~l~~l~~~~~~~~  177 (384)
                      .++     ...+++|++|+++++ .++.++   .++|++|.++++....++  .     ...+..+..+..+  ..+.++
T Consensus        99 ~~~-----~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~  170 (457)
T 3bz5_A           99 NLD-----VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQT  170 (457)
T ss_dssp             CCC-----CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred             eee-----cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCC
Confidence            553     467999999999997 455555   457899999887754332  0     0001111111111  133566


Q ss_pred             CccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcc
Q 016694          178 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL  257 (384)
Q Consensus       178 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L  257 (384)
                      +|+.|+++++ .++.++      ...+++|+.|+++++ .++.+  .+..+++|+.|+++++. ++.+  +  +..+++|
T Consensus       171 ~L~~L~ls~n-~l~~l~------l~~l~~L~~L~l~~N-~l~~~--~l~~l~~L~~L~Ls~N~-l~~i--p--~~~l~~L  235 (457)
T 3bz5_A          171 QLTTLDCSFN-KITELD------VSQNKLLNRLNCDTN-NITKL--DLNQNIQLTFLDCSSNK-LTEI--D--VTPLTQL  235 (457)
T ss_dssp             TCCEEECCSS-CCCCCC------CTTCTTCCEEECCSS-CCSCC--CCTTCTTCSEEECCSSC-CSCC--C--CTTCTTC
T ss_pred             cCCEEECCCC-ccceec------cccCCCCCEEECcCC-cCCee--ccccCCCCCEEECcCCc-cccc--C--ccccCCC
Confidence            6666666665 344432      245667777777775 35554  35677788888888764 5554  2  4567888


Q ss_pred             cEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCC-----
Q 016694          258 GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-----  332 (384)
Q Consensus       258 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-----  332 (384)
                      ++|+++++ .+..++...-..-........+|+.|++++|..+..++    ...+++|++|++++|+.++.+|..     
T Consensus       236 ~~L~l~~N-~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~  310 (457)
T 3bz5_A          236 TYFDCSVN-PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGIT  310 (457)
T ss_dssp             SEEECCSS-CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred             CEEEeeCC-cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcce
Confidence            88888875 34443321000000000011234555566665555554    245799999999999877666642     


Q ss_pred             ---CcCCCCCeeeccCCCC
Q 016694          333 ---VVDAPKLNKVKPTEEE  348 (384)
Q Consensus       333 ---~~~~~~L~~l~i~~~~  348 (384)
                         +...++|++++++++.
T Consensus       311 ~L~l~~~~~L~~L~L~~N~  329 (457)
T 3bz5_A          311 ELDLSQNPKLVYLYLNNTE  329 (457)
T ss_dssp             CCCCTTCTTCCEEECTTCC
T ss_pred             EechhhcccCCEEECCCCc
Confidence               2345677888887774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=1.7e-18  Score=171.92  Aligned_cols=61  Identities=11%  Similarity=0.058  Sum_probs=38.8

Q ss_pred             ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCC-CccCCCCcCCCCCeeeccCCCC
Q 016694          286 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM-KIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       286 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l-~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                      +++|++|++++|. ++.... ..+..+++|++|++++|... ..+|..+..+++|+++++++|.
T Consensus       420 l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          420 LRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             CTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             CCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            5566666666553 222211 12456788888888887543 2577777778888888888874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.81  E-value=4.7e-18  Score=164.07  Aligned_cols=298  Identities=16%  Similarity=0.130  Sum_probs=181.8

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++|++|+++++.....+   .+..+..+++|++|++++| +++...+.. ++++++|++|++++| .+.+.....  
T Consensus        51 ~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~--  122 (455)
T 3v47_A           51 SRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYN-QFLQLETGA-FNGLANLEVLTLTQC-NLDGAVLSG--  122 (455)
T ss_dssp             SSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTC-TTCEECTTT-TTTCTTCCEEECTTS-CCBTHHHHS--
T ss_pred             ccCccccEEECcCCcccceE---CcccccccccCCEEeCCCC-ccCccChhh-ccCcccCCEEeCCCC-CCCccccCc--
Confidence            46788888888888433233   1345677888888888887 566664443 467888888888888 665421111  


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------------------------
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------------------------  137 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------------------------  137 (384)
                       ....    .+++|++|+++++. ++.+.. ......+++|++|+++++..-...+                        
T Consensus       123 -~~~~----~l~~L~~L~L~~n~-l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~  195 (455)
T 3v47_A          123 -NFFK----PLTSLEMLVLRDNN-IKKIQP-ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM  195 (455)
T ss_dssp             -STTT----TCTTCCEEECCSSB-CCSCCC-CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred             -cccc----CcccCCEEECCCCc-cCccCc-ccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence             0011    56677777777766 444422 1124566777777776653211111                        


Q ss_pred             ---------------CCCeeEEEecCCCCccc-cc---------cc---cccccC---------Ccccc---cCCccccC
Q 016694          138 ---------------SNSVVHVTTDNKEPEKL-TS---------EE---NFFLTD---------QIQPL---FDEKVAFP  177 (384)
Q Consensus       138 ---------------~~~L~~L~i~~~~~~~~-~~---------~~---~~~~~~---------~l~~l---~~~~~~~~  177 (384)
                                     .++|++|+++++..... +.         .+   .+..+.         .+...   ....-..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (455)
T 3v47_A          196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS  275 (455)
T ss_dssp             STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred             chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence                           12456666655543210 00         00   000000         00000   00000246


Q ss_pred             CccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcc
Q 016694          178 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL  257 (384)
Q Consensus       178 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L  257 (384)
                      +|+.|+++++ .+..+...   ....+++|++|+++++..-...+..+..+++|++|+++++. ++.+. +..+..+++|
T Consensus       276 ~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L  349 (455)
T 3v47_A          276 GVKTCDLSKS-KIFALLKS---VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSID-SRMFENLDKL  349 (455)
T ss_dssp             CCCEEECCSS-CCCEECTT---TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-GGGGTTCTTC
T ss_pred             CceEEEecCc-cccccchh---hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcC-hhHhcCcccC
Confidence            8999999887 34332221   13678999999999975444445578899999999999984 65553 3456789999


Q ss_pred             cEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccC
Q 016694          258 GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS  330 (384)
Q Consensus       258 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp  330 (384)
                      ++|++++| .+..+...       ....+++|++|+++++ +++.++.. .+..+++|++|++++++.-...|
T Consensus       350 ~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          350 EVLDLSYN-HIRALGDQ-------SFLGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEEECCSS-CCCEECTT-------TTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CEEECCCC-cccccChh-------hccccccccEEECCCC-ccccCCHh-HhccCCcccEEEccCCCcccCCC
Confidence            99999996 46655432       1223899999999985 67776553 35679999999999986544444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=4.4e-18  Score=172.61  Aligned_cols=129  Identities=19%  Similarity=0.210  Sum_probs=89.1

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      +++++|+++++ .+..+   .+..++.+++|++|++++| .+++.++.. ++++++|++|++++| .+..+++....   
T Consensus        25 ~~l~~L~Ls~n-~l~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~~~---   94 (680)
T 1ziw_A           25 TNITVLNLTHN-QLRRL---PAANFTRYSQLTSLDVGFN-TISKLEPEL-CQKLPMLKVLNLQHN-ELSQLSDKTFA---   94 (680)
T ss_dssp             TTCSEEECCSS-CCCCC---CGGGGGGGTTCSEEECCSS-CCCCCCTTH-HHHCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred             CCCcEEECCCC-CCCCc---CHHHHhCCCcCcEEECCCC-ccCccCHHH-HhcccCcCEEECCCC-ccCccChhhhc---
Confidence            57889999988 56554   1234778889999999887 667765543 568899999999988 77777654332   


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPE  152 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~  152 (384)
                            .+++|++|+++++. ++.++.  .....+++|++|++++|......+     .++|++|.++++...
T Consensus        95 ------~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           95 ------FCTNLTELHLMSNS-IQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             ------TCTTCSEEECCSSC-CCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             ------cCCCCCEEECCCCc-cCccCh--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence                  67788888888775 555543  245667888888888764322111     346778887776543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=6.4e-18  Score=168.36  Aligned_cols=252  Identities=19%  Similarity=0.148  Sum_probs=191.2

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      ++++|+++++ .+..+    |..+.  ++|++|++++| +++.++.     .+++|++|++++| .++.++.        
T Consensus        41 ~l~~L~ls~n-~L~~l----p~~l~--~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~--------   98 (622)
T 3g06_A           41 GNAVLNVGES-GLTTL----PDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV--------   98 (622)
T ss_dssp             CCCEEECCSS-CCSCC----CSCCC--TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC--------
T ss_pred             CCcEEEecCC-CcCcc----ChhhC--CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC--------
Confidence            5889999998 67776    76544  89999999998 7777754     5699999999999 7877654        


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCcccccccccccc
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                           .+++|++|+++++. ++.++.      .+++|+.|+++++ .++.+|  +++|++|+++++.+..+         
T Consensus        99 -----~l~~L~~L~Ls~N~-l~~l~~------~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l---------  156 (622)
T 3g06_A           99 -----LPPGLLELSIFSNP-LTHLPA------LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASL---------  156 (622)
T ss_dssp             -----CCTTCCEEEECSCC-CCCCCC------CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCC---------
T ss_pred             -----CCCCCCEEECcCCc-CCCCCC------CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCc---------
Confidence                 46789999999886 666654      5788999999886 466565  46899999987663221         


Q ss_pred             CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCe
Q 016694          164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI  243 (384)
Q Consensus       164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  243 (384)
                            ..   .+++|+.|+++++ .+..++       ..+++|+.|+++++ .++.+|.   ..++|+.|+++++. ++
T Consensus       157 ------~~---~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N~-l~  214 (622)
T 3g06_A          157 ------PA---LPSELCKLWAYNN-QLTSLP-------MLPSGLQELSVSDN-QLASLPT---LPSELYKLWAYNNR-LT  214 (622)
T ss_dssp             ------CC---CCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CS
T ss_pred             ------CC---ccCCCCEEECCCC-CCCCCc-------ccCCCCcEEECCCC-CCCCCCC---ccchhhEEECcCCc-cc
Confidence                  11   3568899998887 555543       34688999999986 4666654   34789999999874 55


Q ss_pred             eecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 016694          244 NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC  323 (384)
Q Consensus       244 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c  323 (384)
                      .++     ..+++|++|++++| .+..++..           +++|++|+++++ +++.++.     .+++|++|++++|
T Consensus       215 ~l~-----~~~~~L~~L~Ls~N-~L~~lp~~-----------l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N  271 (622)
T 3g06_A          215 SLP-----ALPSGLKELIVSGN-RLTSLPVL-----------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN  271 (622)
T ss_dssp             SCC-----CCCTTCCEEECCSS-CCSCCCCC-----------CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred             ccC-----CCCCCCCEEEccCC-ccCcCCCC-----------CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC
Confidence            542     23588999999985 56655433           789999999886 6776643     5789999999998


Q ss_pred             CCCCccCCCCcCCCCCeeeccCCC
Q 016694          324 PTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       324 ~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                       .++.+|..+..+++|+.+++++|
T Consensus       272 -~L~~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          272 -QLTRLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             -CCCSCCGGGGGSCTTCEEECCSC
T ss_pred             -CCCcCCHHHhhccccCEEEecCC
Confidence             57788988888999999999998

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=3.8e-18  Score=157.94  Aligned_cols=283  Identities=12%  Similarity=0.093  Sum_probs=133.2

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      +++.++++++ .+..+    |..+  .++|++|++++| +++.+++.. ++++++|++|++++| .+..+.+....    
T Consensus        34 ~l~~l~~~~~-~l~~i----p~~~--~~~l~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~----   99 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAV----PKEI--SPDTTLLDLQNN-DISELRKDD-FKGLQHLYALVLVNN-KISKIHEKAFS----   99 (332)
T ss_dssp             ETTEEECCSS-CCSSC----CSCC--CTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECGGGST----
T ss_pred             cCCEEECCCC-Ccccc----CCCC--CCCCeEEECCCC-cCCccCHhH-hhCCCCCcEEECCCC-ccCccCHhHhh----
Confidence            4666776666 45554    5443  357777777776 556554433 456777777777777 66666443322    


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCcccccccc
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEEN  159 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~  159 (384)
                           .+++|++|+++++. ++.++.   ..  .++|++|+++++. ++.++      .++|++|+++++.....+    
T Consensus       100 -----~l~~L~~L~L~~n~-l~~l~~---~~--~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~----  163 (332)
T 2ft3_A          100 -----PLRKLQKLYISKNH-LVEIPP---NL--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSG----  163 (332)
T ss_dssp             -----TCTTCCEEECCSSC-CCSCCS---SC--CTTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGG----
T ss_pred             -----CcCCCCEEECCCCc-CCccCc---cc--cccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCC----
Confidence                 56677777777665 555554   21  2667777776643 22221      234555555544321100    


Q ss_pred             ccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccccc-CCcccCCCcCEEEeec
Q 016694          160 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSK  238 (384)
Q Consensus       160 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~  238 (384)
                              ......+.+ +|+.|+++++ .+..++..      ..++|++|+++++. ++.++ ..+..+++|++|++++
T Consensus       164 --------~~~~~~~~l-~L~~L~l~~n-~l~~l~~~------~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~  226 (332)
T 2ft3_A          164 --------FEPGAFDGL-KLNYLRISEA-KLTGIPKD------LPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGH  226 (332)
T ss_dssp             --------SCTTSSCSC-CCSCCBCCSS-BCSSCCSS------SCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCS
T ss_pred             --------CCcccccCC-ccCEEECcCC-CCCccCcc------ccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCC
Confidence                    000011122 4555555554 23332221      12455555555542 33332 3444555555555555


Q ss_pred             CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcc-----cCCC
Q 016694          239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA-----LEFP  313 (384)
Q Consensus       239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~-----~~~~  313 (384)
                      +. ++.+. +..+..+++|++|+++++ .+..++..        ...+++|++|+++++ .++.++.....     ...+
T Consensus       227 N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~lp~~--------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~  294 (332)
T 2ft3_A          227 NQ-IRMIE-NGSLSFLPTLRELHLDNN-KLSRVPAG--------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRA  294 (332)
T ss_dssp             SC-CCCCC-TTGGGGCTTCCEEECCSS-CCCBCCTT--------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSC
T ss_pred             Cc-CCcCC-hhHhhCCCCCCEEECCCC-cCeecChh--------hhcCccCCEEECCCC-CCCccChhHccccccccccc
Confidence            42 33331 122345555555555553 23333211        112455555555553 34444322100     0134


Q ss_pred             CccEEEeccCCCC--CccCCCCcCCCCCeeeccCCC
Q 016694          314 SLEHVVVRQCPTM--KIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       314 ~L~~L~l~~c~~l--~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      +|++|.+.+++..  ...|..+..+++|+.++++++
T Consensus       295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            5555555555432  122233334555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=4.6e-18  Score=167.03  Aligned_cols=307  Identities=13%  Similarity=0.143  Sum_probs=180.7

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|++|+++++ .+..+   .|..+..+++|++|++++| ++++.++.. ++++++|++|++++| .+++++..      
T Consensus        21 ~~L~~L~Ls~n-~i~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~------   87 (520)
T 2z7x_B           21 QKTTILNISQN-YISEL---WTSDILSLSKLRILIISHN-RIQYLDISV-FKFNQELEYLDLSHN-KLVKISCH------   87 (520)
T ss_dssp             TTCSEEECCSS-CCCCC---CHHHHTTCTTCCEEECCSS-CCCEEEGGG-GTTCTTCCEEECCSS-CCCEEECC------
T ss_pred             ccccEEECCCC-ccccc---ChhhccccccccEEecCCC-ccCCcChHH-hhcccCCCEEecCCC-ceeecCcc------
Confidence            67889999988 45544   1345678889999999988 677764543 568899999999998 77776542      


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCe--eEEEecCCCC--c-cccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSV--VHVTTDNKEP--E-KLTS  156 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L--~~L~i~~~~~--~-~~~~  156 (384)
                            .+++|++|+++++. ++.++. ......+++|++|+++++. ++...   ..++  ++|.++++..  . ..+.
T Consensus        88 ------~l~~L~~L~L~~N~-l~~~~~-p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~  158 (520)
T 2z7x_B           88 ------PTVNLKHLDLSFNA-FDALPI-CKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEKEDPE  158 (520)
T ss_dssp             ------CCCCCSEEECCSSC-CSSCCC-CGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred             ------ccCCccEEeccCCc-cccccc-hhhhccCCcceEEEecCcc-cchhhccccccceeeEEEeecccccccccccc
Confidence                  36789999998887 444321 1256778899999998864 33222   3455  8888877654  1 1111


Q ss_pred             ccccc------------------------ccCCcccc-----------------cCCccccC------------------
Q 016694          157 EENFF------------------------LTDQIQPL-----------------FDEKVAFP------------------  177 (384)
Q Consensus       157 ~~~~~------------------------~~~~l~~l-----------------~~~~~~~~------------------  177 (384)
                      .+.-+                        .+..+..+                 .+..+.++                  
T Consensus       159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~  238 (520)
T 2z7x_B          159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI  238 (520)
T ss_dssp             TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred             cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence            10000                        00000000                 00011122                  


Q ss_pred             ---------CccEEecccccccccccccc----------------------cc---------------------------
Q 016694          178 ---------QLRYLELSRLHKVQHLWKEN----------------------DE---------------------------  199 (384)
Q Consensus       178 ---------~L~~L~l~~~~~l~~l~~~~----------------------~~---------------------------  199 (384)
                               +|+.|+++++.--..++..-                      ++                           
T Consensus       239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~  318 (520)
T 2z7x_B          239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML  318 (520)
T ss_dssp             HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred             HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc
Confidence                     33333333321000111100                      00                           


Q ss_pred             cccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeec-ccccccccCcccEEeecccccccE-ecccccC
Q 016694          200 SNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL-TLSTSESLVNLGRMKIADCKMIEQ-IIQLQVG  277 (384)
Q Consensus       200 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~  277 (384)
                      ....+++|++|+++++..-..+|..+..+++|++|+++++. ++.+. .+..+..+++|++|+++++. +.. ++..   
T Consensus       319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~---  393 (520)
T 2z7x_B          319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG---  393 (520)
T ss_dssp             CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC---
T ss_pred             chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCcccccc---
Confidence            00345666677776654333455666677777777777764 44321 12335667777777777743 333 3211   


Q ss_pred             ccccceeeecccceeecccCCCCceecCCCcccCC-CCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694          278 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                          ....+++|++|+++++.--..++     ..+ ++|++|++++| .++.+|..+..+++|+++++++|.
T Consensus       394 ----~~~~l~~L~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          394 ----DCSWTKSLLSLNMSSNILTDTIF-----RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ  455 (520)
T ss_dssp             ----SCCCCTTCCEEECCSSCCCGGGG-----GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ----hhccCccCCEEECcCCCCCcchh-----hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence                12236788888887764222221     123 79999999998 577899888789999999999985

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=9e-18  Score=174.25  Aligned_cols=312  Identities=13%  Similarity=0.063  Sum_probs=202.1

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      .++|++|+++++ .+..+   .|..+..+++|++|++++|.....+++.. ++++++|++|++++| .+..+.+....  
T Consensus        23 p~~l~~LdLs~N-~i~~i---~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~~p~~~~--   94 (844)
T 3j0a_A           23 LNTTERLLLSFN-YIRTV---TASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFLHPDAFQ--   94 (844)
T ss_dssp             CTTCCEEEEESC-CCCEE---CSSSCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEECTTSSC--
T ss_pred             CCCcCEEECCCC-cCCcc---ChhHCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCcccCHhHcc--
Confidence            378999999999 56654   25678899999999999986555554433 579999999999999 78887655543  


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccc-----c-cCCCeeEEEecCCCCcccc-c
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET-----F-ISNSVVHVTTDNKEPEKLT-S  156 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----~-~~~~L~~L~i~~~~~~~~~-~  156 (384)
                             .+++|++|+++++.....++. ......+++|++|+++++.....     + ..++|++|+++++...... .
T Consensus        95 -------~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A           95 -------GLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             -------SCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             -------CCcccCEeeCcCCCCCccccc-CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence                   788999999999873333443 23467899999999998754222     1 1467899999887654321 1


Q ss_pred             cc-----------cccccCCcccccCCccccC------CccEEeccccccccccccc---c-------------------
Q 016694          157 EE-----------NFFLTDQIQPLFDEKVAFP------QLRYLELSRLHKVQHLWKE---N-------------------  197 (384)
Q Consensus       157 ~~-----------~~~~~~~l~~l~~~~~~~~------~L~~L~l~~~~~l~~l~~~---~-------------------  197 (384)
                      .+           .+..+.-........+.++      +|+.|+++++.--......   .                   
T Consensus       167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~  246 (844)
T 3j0a_A          167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG  246 (844)
T ss_dssp             GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred             HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence            10           1111111111111122333      3899999887211110000   0                   


Q ss_pred             -----cc-----cc--cccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeeccc
Q 016694          198 -----DE-----SN--KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC  265 (384)
Q Consensus       198 -----~~-----~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c  265 (384)
                           +.     ..  ...++|+.|+++++......+..+..+++|+.|+++++. ++.+. +..+..+++|++|+++++
T Consensus       247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~Ls~N  324 (844)
T 3j0a_A          247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIA-DEAFYGLDNLQVLNLSYN  324 (844)
T ss_dssp             SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEEC-TTTTTTCSSCCEEEEESC
T ss_pred             ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCC-hHHhcCCCCCCEEECCCC
Confidence                 00     00  113678899998875444445567788999999999874 55543 334577889999999985


Q ss_pred             ccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccC
Q 016694          266 KMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPT  345 (384)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~  345 (384)
                      . +..+...       ....+++|+.|+++++ .++.+... .+..+++|++|++++|. ++.++.    +++|+.+.++
T Consensus       325 ~-l~~~~~~-------~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~  389 (844)
T 3j0a_A          325 L-LGELYSS-------NFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLS  389 (844)
T ss_dssp             C-CSCCCSC-------SCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEE
T ss_pred             C-CCccCHH-------HhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCC-CCcccC----CCCcchhccC
Confidence            4 4444322       2223888999999886 56666543 35678999999999874 555543    6677777777


Q ss_pred             CCC
Q 016694          346 EEE  348 (384)
Q Consensus       346 ~~~  348 (384)
                      ++.
T Consensus       390 ~N~  392 (844)
T 3j0a_A          390 GNK  392 (844)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.80  E-value=1.3e-17  Score=154.09  Aligned_cols=265  Identities=13%  Similarity=0.103  Sum_probs=135.0

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      ++++++++++ .+..+    |..+  .++|++|++++| +++++++.. ++++++|++|++++| .+..+.+....    
T Consensus        32 ~l~~l~~~~~-~l~~l----p~~~--~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~----   97 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKV----PKDL--PPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINN-KISKISPGAFA----   97 (330)
T ss_dssp             ETTEEECTTS-CCCSC----CCSC--CTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCCCBCTTTTT----
T ss_pred             CCeEEEecCC-Ccccc----CccC--CCCCeEEECCCC-cCCEeChhh-hccCCCCCEEECCCC-cCCeeCHHHhc----
Confidence            4555555555 34433    4332  245666666665 455553322 345666666666666 55554332221    


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCC
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ  165 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~  165 (384)
                           .+++|++|+++++. ++.++.   .  .+++|++|+++++. ++.++                            
T Consensus        98 -----~l~~L~~L~Ls~n~-l~~l~~---~--~~~~L~~L~l~~n~-l~~~~----------------------------  137 (330)
T 1xku_A           98 -----PLVKLERLYLSKNQ-LKELPE---K--MPKTLQELRVHENE-ITKVR----------------------------  137 (330)
T ss_dssp             -----TCTTCCEEECCSSC-CSBCCS---S--CCTTCCEEECCSSC-CCBBC----------------------------
T ss_pred             -----CCCCCCEEECCCCc-CCccCh---h--hcccccEEECCCCc-ccccC----------------------------
Confidence                 45566666666554 444443   1  12455666555542 22111                            


Q ss_pred             cccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeee
Q 016694          166 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINV  245 (384)
Q Consensus       166 l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  245 (384)
                       ..   .++.+++|+.|+++++. +...... ......+++|++|+++++ .++.+|..+  .++|++|+++++. ++.+
T Consensus       138 -~~---~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n~-l~~~  207 (330)
T 1xku_A          138 -KS---VFNGLNQMIVVELGTNP-LKSSGIE-NGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNK-ITKV  207 (330)
T ss_dssp             -HH---HHTTCTTCCEEECCSSC-CCGGGBC-TTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSC-CCEE
T ss_pred             -Hh---HhcCCccccEEECCCCc-CCccCcC-hhhccCCCCcCEEECCCC-ccccCCccc--cccCCEEECCCCc-CCcc
Confidence             00   01256667777776652 2211000 011245667777777765 355554433  2667777777654 4443


Q ss_pred             cccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 016694          246 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT  325 (384)
Q Consensus       246 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~  325 (384)
                      . +..+..+++|++|+++++ .+..+...       ....+++|++|+++++ .++.++.  ....+++|++|++++| .
T Consensus       208 ~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~  274 (330)
T 1xku_A          208 D-AASLKGLNNLAKLGLSFN-SISAVDNG-------SLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYLHNN-N  274 (330)
T ss_dssp             C-TGGGTTCTTCCEEECCSS-CCCEECTT-------TGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEECCSS-C
T ss_pred             C-HHHhcCCCCCCEEECCCC-cCceeChh-------hccCCCCCCEEECCCC-cCccCCh--hhccCCCcCEEECCCC-c
Confidence            2 234456677777777764 34444321       1122567777777665 4554433  2556677777777766 3


Q ss_pred             CCccCCCCc-------CCCCCeeeccCCC
Q 016694          326 MKIFSQGVV-------DAPKLNKVKPTEE  347 (384)
Q Consensus       326 l~~lp~~~~-------~~~~L~~l~i~~~  347 (384)
                      ++.++....       ..+.++.+++.++
T Consensus       275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N  303 (330)
T 1xku_A          275 ISAIGSNDFCPPGYNTKKASYSGVSLFSN  303 (330)
T ss_dssp             CCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             CCccChhhcCCcccccccccccceEeecC
Confidence            455543321       1255667777766

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=6.4e-18  Score=167.65  Aligned_cols=139  Identities=12%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             ccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecc-cccccccCcccEEeecccccccE-ecccccCc--
Q 016694          203 AFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT-LSTSESLVNLGRMKIADCKMIEQ-IIQLQVGE--  278 (384)
Q Consensus       203 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~--  278 (384)
                      .+++|++|+++++..-..+|..+..+++|++|+++++ .++.+.. +..+..+++|++|+++++. +.. ++...-.+  
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~  428 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAE  428 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCT
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcc
Confidence            4566777777765433345556667777777777775 3444321 2234566777777776643 322 22110000  


Q ss_pred             -----------c-ccceeee-cccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCC-CcCCCCCeeecc
Q 016694          279 -----------E-AKGCVVF-EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKP  344 (384)
Q Consensus       279 -----------~-~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~i  344 (384)
                                 . ......+ ++|++|+++++ +++.++..  ...+++|++|++++| .++.+|.. +..+++|+++++
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC
T ss_pred             cCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe
Confidence                       0 0000112 57788888775 66666543  447899999999887 56788877 667889999999


Q ss_pred             CCC
Q 016694          345 TEE  347 (384)
Q Consensus       345 ~~~  347 (384)
                      ++|
T Consensus       505 ~~N  507 (562)
T 3a79_B          505 HDN  507 (562)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            998

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=3.1e-17  Score=166.37  Aligned_cols=140  Identities=14%  Similarity=0.162  Sum_probs=91.6

Q ss_pred             cccccccEEeeccCcc--cccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccc-cCc
Q 016694          202 KAFANLIRLKISECSK--LQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ-VGE  278 (384)
Q Consensus       202 ~~~~~L~~L~l~~~~~--l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~  278 (384)
                      ..+++|+.|+++++..  +..+|..+..+++|+.|+++++. ++.++ +..+.++++|++|+++++. +..+.... .++
T Consensus       451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~  527 (680)
T 1ziw_A          451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANIN-DDMLEGLEKLEILDLQHNN-LARLWKHANPGG  527 (680)
T ss_dssp             TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CGGGGSTTSTTS
T ss_pred             hcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCC-hhhhccccccCEEeCCCCC-ccccchhhccCC
Confidence            3456677777766542  24556667778888888888864 55542 2345678888888888753 44332110 000


Q ss_pred             cccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeeeccCCC
Q 016694          279 EAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  347 (384)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l~i~~~  347 (384)
                      .......+++|+.|+++++ .++.++.. .+..+++|++|+++++ .++.+|.+. ..+++|+.+++++|
T Consensus       528 ~~~~~~~l~~L~~L~L~~N-~l~~i~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          528 PIYFLKGLSHLHILNLESN-GFDEIPVE-VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             CCCTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cchhhcCCCCCCEEECCCC-CCCCCCHH-HcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence            0011234788899999875 56666543 2567899999999876 677787764 46899999999988

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=6.3e-18  Score=156.46  Aligned_cols=271  Identities=14%  Similarity=0.043  Sum_probs=185.2

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      .++|++|+++++ .+..+   .|..+..+++|++|++++| +++.+.+.. ++++++|++|++++| .+..++...    
T Consensus        53 ~~~l~~L~l~~n-~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~----  121 (332)
T 2ft3_A           53 SPDTTLLDLQNN-DISEL---RKDDFKGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKN-HLVEIPPNL----  121 (332)
T ss_dssp             CTTCCEEECCSS-CCCEE---CTTTTTTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSS-CCCSCCSSC----
T ss_pred             CCCCeEEECCCC-cCCcc---CHhHhhCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCC-cCCccCccc----
Confidence            368999999999 56665   1446889999999999998 778775544 578999999999999 788775433    


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcc--ccc--C--CCeeEEEecCCCCcccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME--TFI--S--NSVVHVTTDNKEPEKLTSE  157 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~--~--~~L~~L~i~~~~~~~~~~~  157 (384)
                              +++|++|+++++. ++.++.  .....+++|++|+++++..-.  ..+  +  ..|++|+++++....    
T Consensus       122 --------~~~L~~L~l~~n~-i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~----  186 (332)
T 2ft3_A          122 --------PSSLVELRIHDNR-IRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG----  186 (332)
T ss_dssp             --------CTTCCEEECCSSC-CCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS----
T ss_pred             --------cccCCEEECCCCc-cCccCH--hHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc----
Confidence                    3789999999887 666654  245779999999999865321  111  1  156677766554322    


Q ss_pred             ccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEe
Q 016694          158 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEV  236 (384)
Q Consensus       158 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l  236 (384)
                                 +...  ..++|++|+++++ .+..+....   ...+++|++|+++++ .++.++. .+..+++|++|++
T Consensus       187 -----------l~~~--~~~~L~~L~l~~n-~i~~~~~~~---l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          187 -----------IPKD--LPETLNELHLDHN-KIQAIELED---LLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHL  248 (332)
T ss_dssp             -----------CCSS--SCSSCSCCBCCSS-CCCCCCTTS---STTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred             -----------cCcc--ccCCCCEEECCCC-cCCccCHHH---hcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEEC
Confidence                       2221  2368999999887 454443221   367889999999987 4555544 5788999999999


Q ss_pred             ecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecC-CCcccCCCCc
Q 016694          237 SKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL-GNYALEFPSL  315 (384)
Q Consensus       237 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~~~~L  315 (384)
                      +++. ++.+  +..+..+++|++|+++++ .++.+... .-........++.|+.|++.+++- ..... +..+..+++|
T Consensus       249 ~~N~-l~~l--p~~l~~l~~L~~L~l~~N-~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N~~-~~~~~~~~~~~~l~~L  322 (332)
T 2ft3_A          249 DNNK-LSRV--PAGLPDLKLLQVVYLHTN-NITKVGVN-DFCPVGFGVKRAYYNGISLFNNPV-PYWEVQPATFRCVTDR  322 (332)
T ss_dssp             CSSC-CCBC--CTTGGGCTTCCEEECCSS-CCCBCCTT-SSSCSSCCSSSCCBSEEECCSSSS-CGGGSCGGGGTTBCCS
T ss_pred             CCCc-Ceec--ChhhhcCccCCEEECCCC-CCCccChh-HccccccccccccccceEeecCcc-cccccCcccccccchh
Confidence            9974 6665  445678999999999985 46655432 111011111267899999998764 32211 1235668999


Q ss_pred             cEEEeccCC
Q 016694          316 EHVVVRQCP  324 (384)
Q Consensus       316 ~~L~l~~c~  324 (384)
                      +.++++++.
T Consensus       323 ~~l~l~~n~  331 (332)
T 2ft3_A          323 LAIQFGNYK  331 (332)
T ss_dssp             TTEEC----
T ss_pred             hhhhccccc
Confidence            999998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.78  E-value=2e-17  Score=171.65  Aligned_cols=89  Identities=12%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             CCCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcc-cCchhHHhcCCCCCEEEEecccCcceeccc-
Q 016694            1 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCLNNLRWLEVRNCDSLEEVLHL-   78 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-   78 (384)
                      |..+++|++|+++++ .+..+   .|..++.+++|++|++++| ++++ .+....++++++|++|++++| .+...+.. 
T Consensus        69 f~~L~~L~~L~Ls~N-~l~~~---~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~  142 (844)
T 3j0a_A           69 FRNLPNLRILDLGSS-KIYFL---HPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHP  142 (844)
T ss_dssp             TSSCTTCCEEECTTC-CCCEE---CTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCG
T ss_pred             hcCCCCCCEEECCCC-cCccc---CHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccch
Confidence            356788999999988 45543   2667888899999999988 5555 333334568889999999988 66655332 


Q ss_pred             ccccccccccCCcccccceeccCccc
Q 016694           79 EELNADKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        79 ~~~~~~~~~~~~~~~~L~~L~l~~~~  104 (384)
                      ...         .+++|++|+++++.
T Consensus       143 ~~~---------~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          143 SFG---------KLNSLKSIDFSSNQ  159 (844)
T ss_dssp             GGG---------TCSSCCEEEEESSC
T ss_pred             hHh---------hCCCCCEEECCCCc
Confidence            211         67778888877765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=1.8e-18  Score=158.75  Aligned_cols=247  Identities=14%  Similarity=0.086  Sum_probs=149.6

Q ss_pred             CCccEEEeecCCCCcc--cCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694           33 NNLRHLVVDDCTNMLS--AIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC  110 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  110 (384)
                      .+++.|+++++ ++.+  ..|.. ++++++|++|+++++..+.+..+....         .+++|++|+++++..-..++
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~---------~l~~L~~L~Ls~n~l~~~~p  118 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIA---------KLTQLHYLYITHTNVSGAIP  118 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGG---------GCTTCSEEEEEEECCEEECC
T ss_pred             ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHh---------cCCCCCEEECcCCeeCCcCC
Confidence            56777888777 5554  22332 567788888888752255533333322         66777888877776333444


Q ss_pred             cCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccc
Q 016694          111 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV  190 (384)
Q Consensus       111 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l  190 (384)
                      .   ....+++|++|+++++..-...                                 +..++.+++|++|+++++ .+
T Consensus       119 ~---~~~~l~~L~~L~Ls~N~l~~~~---------------------------------p~~~~~l~~L~~L~L~~N-~l  161 (313)
T 1ogq_A          119 D---FLSQIKTLVTLDFSYNALSGTL---------------------------------PPSISSLPNLVGITFDGN-RI  161 (313)
T ss_dssp             G---GGGGCTTCCEEECCSSEEESCC---------------------------------CGGGGGCTTCCEEECCSS-CC
T ss_pred             H---HHhCCCCCCEEeCCCCccCCcC---------------------------------ChHHhcCCCCCeEECcCC-cc
Confidence            4   4566777777777775211111                                 111225677777777776 33


Q ss_pred             c-cccccccccccccc-cccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccc
Q 016694          191 Q-HLWKENDESNKAFA-NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI  268 (384)
Q Consensus       191 ~-~l~~~~~~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l  268 (384)
                      . .++..    ...++ +|++|+++++..-..+|..+..++ |+.|+++++. ++.. .+..+..+++|++|+++++. +
T Consensus       162 ~~~~p~~----l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l  233 (313)
T 1ogq_A          162 SGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNS-L  233 (313)
T ss_dssp             EEECCGG----GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEEC-CGGGCCTTSCCSEEECCSSE-E
T ss_pred             cCcCCHH----HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCc-CCHHHhcCCCCCEEECCCCc-e
Confidence            3 22221    24454 777888877654445666666665 8888888764 4433 24455677888888888754 3


Q ss_pred             cEecccccCccccceeeecccceeecccCCCCc-eecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          269 EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT-SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      ...+..        ...+++|++|+++++. ++ .++.  .+..+++|++|++++|+.-..+|.. ..+++|+.+++.+|
T Consensus       234 ~~~~~~--------~~~l~~L~~L~Ls~N~-l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          234 AFDLGK--------VGLSKNLNGLDLRNNR-IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN  301 (313)
T ss_dssp             CCBGGG--------CCCCTTCCEEECCSSC-CEECCCG--GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred             eeecCc--------ccccCCCCEEECcCCc-ccCcCCh--HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence            322211        2236788888887753 43 3322  3667888899998888655567765 56788888888887

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=2.1e-17  Score=152.76  Aligned_cols=270  Identities=14%  Similarity=0.105  Sum_probs=181.0

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|++|+++++ .+..+.   +..+..+++|++|++++| +++.+.+.. ++++++|++|++++| .+..++..      
T Consensus        52 ~~l~~L~L~~n-~i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~~------  118 (330)
T 1xku_A           52 PDTALLDLQNN-KITEIK---DGDFKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKN-QLKELPEK------  118 (330)
T ss_dssp             TTCCEEECCSS-CCCCBC---TTTTTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCSBCCSS------
T ss_pred             CCCeEEECCCC-cCCEeC---hhhhccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCC-cCCccChh------
Confidence            68999999999 566651   336789999999999998 777775544 579999999999999 78776543      


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccC
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTD  164 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~  164 (384)
                            .+++|++|+++++. ++.++.  .....+++|+.|+++++.. +...                           
T Consensus       119 ------~~~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~l-~~~~---------------------------  161 (330)
T 1xku_A          119 ------MPKTLQELRVHENE-ITKVRK--SVFNGLNQMIVVELGTNPL-KSSG---------------------------  161 (330)
T ss_dssp             ------CCTTCCEEECCSSC-CCBBCH--HHHTTCTTCCEEECCSSCC-CGGG---------------------------
T ss_pred             ------hcccccEEECCCCc-ccccCH--hHhcCCccccEEECCCCcC-CccC---------------------------
Confidence                  34789999999886 555543  2356789999999988643 2110                           


Q ss_pred             CcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeecCCCCe
Q 016694          165 QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCHGLI  243 (384)
Q Consensus       165 ~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~  243 (384)
                         .....++.+++|+.|+++++ .+..++..      ..++|++|+++++. ++.+ +..+..+++|++|+++++. ++
T Consensus       162 ---~~~~~~~~l~~L~~L~l~~n-~l~~l~~~------~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~  229 (330)
T 1xku_A          162 ---IENGAFQGMKKLSYIRIADT-NITTIPQG------LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-IS  229 (330)
T ss_dssp             ---BCTTGGGGCTTCCEEECCSS-CCCSCCSS------CCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CC
T ss_pred             ---cChhhccCCCCcCEEECCCC-ccccCCcc------ccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-Cc
Confidence               00011226778888888876 45444322      23788888888864 4444 4566778888888888864 55


Q ss_pred             eecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCc-----ccCCCCccEE
Q 016694          244 NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY-----ALEFPSLEHV  318 (384)
Q Consensus       244 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~-----~~~~~~L~~L  318 (384)
                      .+. +..+..+++|++|++++| .+..++..        ...+++|++|+++++ .++.++....     ....++++.+
T Consensus       230 ~~~-~~~~~~l~~L~~L~L~~N-~l~~lp~~--------l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l  298 (330)
T 1xku_A          230 AVD-NGSLANTPHLRELHLNNN-KLVKVPGG--------LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV  298 (330)
T ss_dssp             EEC-TTTGGGSTTCCEEECCSS-CCSSCCTT--------TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred             eeC-hhhccCCCCCCEEECCCC-cCccCChh--------hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccce
Confidence            542 234567788888888885 35544322        123788888888875 4665544221     1134788999


Q ss_pred             EeccCCCCC--ccCCCCcCCCCCeeeccCCC
Q 016694          319 VVRQCPTMK--IFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       319 ~l~~c~~l~--~lp~~~~~~~~L~~l~i~~~  347 (384)
                      ++.+++...  ..|..+..+++++.+++++|
T Consensus       299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             ECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             EeecCcccccccCccccccccceeEEEeccc
Confidence            999886432  23344555788999998876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=6.9e-17  Score=155.76  Aligned_cols=201  Identities=17%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             ccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCccccccccccccCCcccccC
Q 016694           94 KLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFD  171 (384)
Q Consensus        94 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~  171 (384)
                      +|++|+++++. ++.++.    ...+++|++|++++|. ++.+|  +.+|++|+++++...               .+. 
T Consensus       174 ~L~~L~L~~n~-l~~l~~----~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~---------------~lp-  231 (454)
T 1jl5_A          174 SLEFIAAGNNQ-LEELPE----LQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILE---------------ELP-  231 (454)
T ss_dssp             TCCEEECCSSC-CSSCCC----CTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCS---------------SCC-
T ss_pred             cccEEECcCCc-CCcCcc----ccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCC---------------ccc-
Confidence            45555555443 333321    3445555555555542 32222  234555555544322               221 


Q ss_pred             CccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccc--
Q 016694          172 EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLS--  249 (384)
Q Consensus       172 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~--  249 (384)
                      ..+.+++|+.|+++++ .+..++.       .+++|+.|+++++. ++.+|..   +++|+.|+++++. ++.++...  
T Consensus       232 ~~~~l~~L~~L~l~~N-~l~~l~~-------~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~-l~~l~~~~~~  298 (454)
T 1jl5_A          232 ELQNLPFLTTIYADNN-LLKTLPD-------LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENI-FSGLSELPPN  298 (454)
T ss_dssp             CCTTCTTCCEEECCSS-CCSSCCS-------CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSEESCCCTT
T ss_pred             ccCCCCCCCEEECCCC-cCCcccc-------cccccCEEECCCCc-ccccCcc---cCcCCEEECcCCc-cCcccCcCCc
Confidence            2345677777777765 3333211       23566666666642 4444332   2456666665543 33321000  


Q ss_pred             ------------ccccc-CcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCcc
Q 016694          250 ------------TSESL-VNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLE  316 (384)
Q Consensus       250 ------------~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~  316 (384)
                                  ....+ ++|++|+++++ .+..++..           +++|++|+++++ .++.++.     .+++|+
T Consensus       299 L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~-----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~  360 (454)
T 1jl5_A          299 LYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL-----------PPRLERLIASFN-HLAEVPE-----LPQNLK  360 (454)
T ss_dssp             CCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC-----------CTTCCEEECCSS-CCSCCCC-----CCTTCC
T ss_pred             CCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc-----------CCcCCEEECCCC-ccccccc-----hhhhcc
Confidence                        00011 24455555542 23332221           566777777664 4444432     356777


Q ss_pred             EEEeccCCCCC--ccCCCCcCC-------------CCCeeeccCCC
Q 016694          317 HVVVRQCPTMK--IFSQGVVDA-------------PKLNKVKPTEE  347 (384)
Q Consensus       317 ~L~l~~c~~l~--~lp~~~~~~-------------~~L~~l~i~~~  347 (384)
                      +|++++|+...  .+|.++..+             ++|+++++++|
T Consensus       361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N  406 (454)
T 1jl5_A          361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN  406 (454)
T ss_dssp             EEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred             EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence            77777765433  455555444             66777777766

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=1.7e-16  Score=159.17  Aligned_cols=132  Identities=19%  Similarity=0.086  Sum_probs=87.5

Q ss_pred             ccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcccccee
Q 016694          205 ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCV  284 (384)
Q Consensus       205 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  284 (384)
                      .+++.++++++..-...+..+..++.|+.|+++++...... .+..+..+++|++|++++| .++.++..       ...
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N-~L~~l~~~-------~f~  515 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC-QLEQLSPT-------AFN  515 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTS-CCCEECTT-------TTT
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCC-ccCCcChH-------HHc
Confidence            34444444443222222334556778888888887544433 2445678899999999985 56666533       122


Q ss_pred             eecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCC-CCCeeeccCCC
Q 016694          285 VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA-PKLNKVKPTEE  347 (384)
Q Consensus       285 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~-~~L~~l~i~~~  347 (384)
                      .+++|++|+++++ +++.+... .+..+++|++|+++++......|..+.++ ++|+++++++|
T Consensus       516 ~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          516 SLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             TCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred             CCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence            3889999999885 67776543 35678999999999985444445555555 68999999998

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.76  E-value=5.2e-18  Score=158.42  Aligned_cols=254  Identities=11%  Similarity=0.083  Sum_probs=158.5

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      ++|++|++++| +++.+++.. ++++++|++|++++| .+.++++....         .+++|++|+++++. ++.++. 
T Consensus        52 ~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n~-l~~~~~-  117 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSN-GINTIEEDSFS---------SLGSLEHLDLSYNY-LSNLSS-  117 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTT---------TCTTCCEEECCSSC-CSSCCH-
T ss_pred             ccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCC-ccCccCHhhcC---------CCCCCCEEECCCCc-CCcCCH-
Confidence            46777777766 555554422 356677777777776 66655443322         55667777776664 444443 


Q ss_pred             cccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccccc
Q 016694          113 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH  192 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~  192 (384)
                       .....+++|++|+++++ .++.++.                            .   ..++.+++|++|+++++..+..
T Consensus       118 -~~~~~l~~L~~L~L~~n-~l~~l~~----------------------------~---~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A          118 -SWFKPLSSLTFLNLLGN-PYKTLGE----------------------------T---SLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             -HHHTTCTTCSEEECTTC-CCSSSCS----------------------------S---CSCTTCTTCCEEEEEESSSCCE
T ss_pred             -hHhCCCccCCEEECCCC-CCcccCc----------------------------h---hhhccCCCCcEEECCCCccccc
Confidence             12345666666666664 2222110                            0   0123688999999998865555


Q ss_pred             ccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEec
Q 016694          193 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII  272 (384)
Q Consensus       193 l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~  272 (384)
                      +....   ...+++|++|+++++..-...|..+..+++|++|+++++. ++.++ ......+++|++|+++++. +....
T Consensus       165 ~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~  238 (353)
T 2z80_A          165 IQRKD---FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTD-LDTFH  238 (353)
T ss_dssp             ECTTT---TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCB-CTTCC
T ss_pred             cCHHH---ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCCc-ccccc
Confidence            43322   3568899999999976444446778889999999999875 54442 2234458899999999854 44332


Q ss_pred             ccccCccccceeeecccceeecccCCCCce-----ecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeeeccCC
Q 016694          273 QLQVGEEAKGCVVFEELGYLGLDCLPSLTS-----FCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTE  346 (384)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-----l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l~i~~  346 (384)
                      .. .   .......+.++.+++.++ .+..     ++.  ....+++|++|++++| .++.+|.++ ..+++|+++++++
T Consensus       239 ~~-~---l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~  310 (353)
T 2z80_A          239 FS-E---LSTGETNSLIKKFTFRNV-KITDESLFQVMK--LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT  310 (353)
T ss_dssp             CC----------CCCCCCEEEEESC-BCCHHHHHHHHH--HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cc-c---cccccccchhhccccccc-cccCcchhhhHH--HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence            11 0   001112455666666554 2222     211  2457899999999998 677899875 6799999999999


Q ss_pred             C
Q 016694          347 E  347 (384)
Q Consensus       347 ~  347 (384)
                      |
T Consensus       311 N  311 (353)
T 2z80_A          311 N  311 (353)
T ss_dssp             S
T ss_pred             C
Confidence            9

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=1.6e-16  Score=153.41  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             ccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcccc
Q 016694          203 AFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK  281 (384)
Q Consensus       203 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  281 (384)
                      .+++|++|++++|..++.++. .+..+++|+.|+++++. ++.++   .+..+++|++|+++++ .+..+...       
T Consensus       169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~-------  236 (452)
T 3zyi_A          169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP---NLTPLVGLEELEMSGN-HFPEIRPG-------  236 (452)
T ss_dssp             TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC---CCTTCTTCCEEECTTS-CCSEECGG-------
T ss_pred             cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc---cccccccccEEECcCC-cCcccCcc-------
Confidence            344555555555444444433 23344555555555542 33321   1334455555555543 23333211       


Q ss_pred             ceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeeeccCCC
Q 016694          282 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  347 (384)
Q Consensus       282 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l~i~~~  347 (384)
                      ....+++|++|+++++ .++.+... .+..+++|++|++++| .++.+|... ..+++|+.+++++|
T Consensus       237 ~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          237 SFHGLSSLKKLWVMNS-QVSLIERN-AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             GGTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             cccCccCCCEEEeCCC-cCceECHH-HhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence            1112445555555543 33333322 2344555666666555 344444332 34555666666555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=3.9e-17  Score=157.63  Aligned_cols=112  Identities=21%  Similarity=0.200  Sum_probs=55.4

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      ++++|+++++ .+..+   .|..+..+++|++|++++| ++..+++.. +.++++|++|++++| .+..+++....    
T Consensus        76 ~l~~L~L~~n-~i~~~---~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~----  144 (452)
T 3zyi_A           76 NTRYLNLMEN-NIQMI---QADTFRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-WLTVIPSGAFE----  144 (452)
T ss_dssp             TCSEEECCSS-CCCEE---CTTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSBCCTTTSS----
T ss_pred             CccEEECcCC-cCceE---CHHHcCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-cCCccChhhhc----
Confidence            4555555555 34432   1334455556666666555 444443322 345555666666555 45544443321    


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccc
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF  136 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  136 (384)
                           .+++|++|+++++. ++.++.  .....+++|++|++++|..++.+
T Consensus       145 -----~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          145 -----YLSKLRELWLRNNP-IESIPS--YAFNRVPSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             -----SCTTCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCCEE
T ss_pred             -----ccCCCCEEECCCCC-cceeCH--hHHhcCCcccEEeCCCCCCcccc
Confidence                 45555566555554 344432  12344555555555555554433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=1.8e-16  Score=152.43  Aligned_cols=59  Identities=14%  Similarity=0.067  Sum_probs=26.6

Q ss_pred             CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           59 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        59 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                      +++++|++++| .+..+++....         .+++|++|+++++. ++.++.  .....+++|++|+++++
T Consensus        64 ~~l~~L~L~~n-~i~~~~~~~~~---------~l~~L~~L~Ls~n~-i~~i~~--~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           64 TNTRLLNLHEN-QIQIIKVNSFK---------HLRHLEILQLSRNH-IRTIEI--GAFNGLANLNTLELFDN  122 (440)
T ss_dssp             TTCSEEECCSC-CCCEECTTTTS---------SCSSCCEEECCSSC-CCEECG--GGGTTCSSCCEEECCSS
T ss_pred             CCCcEEEccCC-cCCeeCHHHhh---------CCCCCCEEECCCCc-CCccCh--hhccCCccCCEEECCCC
Confidence            44555555555 44444433221         44555555555543 333332  12334455555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=6.4e-17  Score=155.59  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=52.0

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      +++.|+++++ .+..+.   +..+..+++|++|++++| +++.+++.. +.++++|++|++++| .+..+++....    
T Consensus        65 ~l~~L~L~~n-~i~~~~---~~~~~~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~----  133 (440)
T 3zyj_A           65 NTRLLNLHEN-QIQIIK---VNSFKHLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDN-RLTTIPNGAFV----  133 (440)
T ss_dssp             TCSEEECCSC-CCCEEC---TTTTSSCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSS-CCSSCCTTTSC----
T ss_pred             CCcEEEccCC-cCCeeC---HHHhhCCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCC-cCCeeCHhHhh----
Confidence            4555555555 344330   233455555555555555 444443322 345555555555555 45544433221    


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcc
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME  134 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~  134 (384)
                           .+++|++|+++++. ++.++.  .....+++|++|++++|..+.
T Consensus       134 -----~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~l~~~~~l~  174 (440)
T 3zyj_A          134 -----YLSKLKELWLRNNP-IESIPS--YAFNRIPSLRRLDLGELKRLS  174 (440)
T ss_dssp             -----SCSSCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCC
T ss_pred             -----ccccCceeeCCCCc-ccccCH--HHhhhCcccCEeCCCCCCCcc
Confidence                 44555555555544 333332  123345555555555554444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=1.8e-16  Score=157.90  Aligned_cols=237  Identities=18%  Similarity=0.107  Sum_probs=183.5

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|++|++++| .+..+    |.   .+++|++|++++| +++.++.     .+++|++|++++| .+..++.       
T Consensus        61 ~~L~~L~L~~N-~l~~l----p~---~l~~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~l~~-------  118 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSL----PA---LPPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSN-PLTHLPA-------  118 (622)
T ss_dssp             TTCSEEEECSC-CCSCC----CC---CCTTCCEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCCCCCC-------
T ss_pred             CCCcEEEecCC-CCCCC----CC---cCCCCCEEEcCCC-cCCcCCC-----CCCCCCEEECcCC-cCCCCCC-------
Confidence            68999999999 67766    54   5789999999999 6777754     6799999999999 7877754       


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCccccccccccc
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL  162 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~  162 (384)
                            .+++|++|+++++. ++.++.      .+++|++|++++| .++.+|  +.+|+.|.++++.+..         
T Consensus       119 ------~l~~L~~L~L~~N~-l~~lp~------~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~---------  175 (622)
T 3g06_A          119 ------LPSGLCKLWIFGNQ-LTSLPV------LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTS---------  175 (622)
T ss_dssp             ------CCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSC---------
T ss_pred             ------CCCCcCEEECCCCC-CCcCCC------CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCC---------
Confidence                  45789999999886 777765      2589999999997 555554  4679999998766322         


Q ss_pred             cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCC
Q 016694          163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL  242 (384)
Q Consensus       163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  242 (384)
                            +.   ..+++|+.|+++++ .+..++       ..+++|+.|+++++ .++.+|.   .+++|+.|+++++ .+
T Consensus       176 ------l~---~~~~~L~~L~Ls~N-~l~~l~-------~~~~~L~~L~L~~N-~l~~l~~---~~~~L~~L~Ls~N-~L  233 (622)
T 3g06_A          176 ------LP---MLPSGLQELSVSDN-QLASLP-------TLPSELYKLWAYNN-RLTSLPA---LPSGLKELIVSGN-RL  233 (622)
T ss_dssp             ------CC---CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CC
T ss_pred             ------Cc---ccCCCCcEEECCCC-CCCCCC-------CccchhhEEECcCC-cccccCC---CCCCCCEEEccCC-cc
Confidence                  11   15789999999987 455542       23578999999986 5777754   3588999999997 46


Q ss_pred             eeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 016694          243 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ  322 (384)
Q Consensus       243 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~  322 (384)
                      +.++     ..+++|++|+++++ .+..++..           +++|+.|+++++ +++.++.  .+..+++|+.|++++
T Consensus       234 ~~lp-----~~l~~L~~L~Ls~N-~L~~lp~~-----------~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          234 TSLP-----VLPSELKELMVSGN-RLTSLPML-----------PSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEG  293 (622)
T ss_dssp             SCCC-----CCCTTCCEEECCSS-CCSCCCCC-----------CTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCS
T ss_pred             CcCC-----CCCCcCcEEECCCC-CCCcCCcc-----------cccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecC
Confidence            6653     45689999999995 56666543           899999999986 6776653  477899999999999


Q ss_pred             CCCCCc
Q 016694          323 CPTMKI  328 (384)
Q Consensus       323 c~~l~~  328 (384)
                      |+.-..
T Consensus       294 N~l~~~  299 (622)
T 3g06_A          294 NPLSER  299 (622)
T ss_dssp             CCCCHH
T ss_pred             CCCCCc
Confidence            875443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=2.5e-17  Score=151.24  Aligned_cols=256  Identities=13%  Similarity=0.078  Sum_probs=179.3

Q ss_pred             CCCceEecCCCcCcc--eecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            5 RDIKYLQLGHFPRLQ--EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~--~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .++++|+++++.-.+  .+    |+.++.+++|++|+++++.++.+..|.. ++++++|++|++++| .+....+.... 
T Consensus        50 ~~l~~L~L~~~~l~~~~~~----~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~-  122 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI----PSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLS-  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC----CGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGG-
T ss_pred             ceEEEEECCCCCccCCccc----ChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHh-
Confidence            579999999984333  45    7788999999999999633667655554 579999999999999 77754444332 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccc
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL  162 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~  162 (384)
                              .+++|++|+++++..-..++.   .+..+++|++|+++++..-..+|                         
T Consensus       123 --------~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p-------------------------  166 (313)
T 1ogq_A          123 --------QIKTLVTLDFSYNALSGTLPP---SISSLPNLVGITFDGNRISGAIP-------------------------  166 (313)
T ss_dssp             --------GCTTCCEEECCSSEEESCCCG---GGGGCTTCCEEECCSSCCEEECC-------------------------
T ss_pred             --------CCCCCCEEeCCCCccCCcCCh---HHhcCCCCCeEECcCCcccCcCC-------------------------
Confidence                    788999999999873335554   56778999999998863221111                         


Q ss_pred             cCCcccccCCccccC-CccEEecccccccc-cccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694          163 TDQIQPLFDEKVAFP-QLRYLELSRLHKVQ-HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       163 ~~~l~~l~~~~~~~~-~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  240 (384)
                              ..++.++ +|+.|+++++. +. .++..    ...++ |++|+++++..-...|..+..+++|+.|+++++.
T Consensus       167 --------~~l~~l~~~L~~L~L~~N~-l~~~~~~~----~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          167 --------DSYGSFSKLFTSMTISRNR-LTGKIPPT----FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             --------GGGGCCCTTCCEEECCSSE-EEEECCGG----GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             --------HHHhhhhhcCcEEECcCCe-eeccCChH----HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence                    1122565 89999999873 33 22211    23444 9999999976555666777889999999999975


Q ss_pred             CCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEe
Q 016694          241 GLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVV  320 (384)
Q Consensus       241 ~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l  320 (384)
                       +...  ...+..+++|++|+++++. +...+..       ....+++|++|+++++.--..++.   ...+++|+++++
T Consensus       233 -l~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~p~-------~l~~l~~L~~L~Ls~N~l~~~ip~---~~~l~~L~~l~l  298 (313)
T 1ogq_A          233 -LAFD--LGKVGLSKNLNGLDLRNNR-IYGTLPQ-------GLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAY  298 (313)
T ss_dssp             -ECCB--GGGCCCCTTCCEEECCSSC-CEECCCG-------GGGGCTTCCEEECCSSEEEEECCC---STTGGGSCGGGT
T ss_pred             -eeee--cCcccccCCCCEEECcCCc-ccCcCCh-------HHhcCcCCCEEECcCCcccccCCC---CccccccChHHh
Confidence             4332  2225678999999999864 4422221       223388999999998743234443   366889999999


Q ss_pred             ccCCCCCccCC
Q 016694          321 RQCPTMKIFSQ  331 (384)
Q Consensus       321 ~~c~~l~~lp~  331 (384)
                      .+++.+...|.
T Consensus       299 ~~N~~lc~~p~  309 (313)
T 1ogq_A          299 ANNKCLCGSPL  309 (313)
T ss_dssp             CSSSEEESTTS
T ss_pred             cCCCCccCCCC
Confidence            99886655553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.72  E-value=4.9e-17  Score=151.78  Aligned_cols=259  Identities=18%  Similarity=0.118  Sum_probs=161.3

Q ss_pred             CCCceEecCCCcCcceecccCCC-CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQAL-PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~-~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      ++|++|+++++ .+..+    +. .+..+++|++|++++| ++++.++.. ++++++|++|++++| .+..+++....  
T Consensus        52 ~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~--  121 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYI----SNSDLQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYN-YLSNLSSSWFK--  121 (353)
T ss_dssp             TTCCEEECTTS-CCCEE----CTTTTTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSSCCHHHHT--
T ss_pred             ccCcEEECCCC-cCccc----CHHHhccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCC-cCCcCCHhHhC--
Confidence            58999999999 67776    44 6789999999999998 778775543 568999999999999 88877665322  


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                             .+++|++|+++++. ++.++. ......+++|++|+++++..++.++..                        
T Consensus       122 -------~l~~L~~L~L~~n~-l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~------------------------  168 (353)
T 2z80_A          122 -------PLSSLTFLNLLGNP-YKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRK------------------------  168 (353)
T ss_dssp             -------TCTTCSEEECTTCC-CSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTT------------------------
T ss_pred             -------CCccCCEEECCCCC-CcccCc-hhhhccCCCCcEEECCCCccccccCHH------------------------
Confidence                   68899999999886 666653 235667999999999998656544211                        


Q ss_pred             CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCc-ccCCCcCEEEeecCCCC
Q 016694          164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKCHGL  242 (384)
Q Consensus       164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l  242 (384)
                              .++.+++|++|+++++ .+..+...   ....+++|++|+++++. ++.++... ..+++|+.|+++++. +
T Consensus       169 --------~~~~l~~L~~L~l~~n-~l~~~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l  234 (353)
T 2z80_A          169 --------DFAGLTFLEELEIDAS-DLQSYEPK---SLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-L  234 (353)
T ss_dssp             --------TTTTCCEEEEEEEEET-TCCEECTT---TTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-C
T ss_pred             --------HccCCCCCCEEECCCC-CcCccCHH---HHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-c
Confidence                    1114566666666665 23322111   12455667777776653 44443322 235667777777653 3


Q ss_pred             eeecccc--cccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEe
Q 016694          243 INVLTLS--TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVV  320 (384)
Q Consensus       243 ~~l~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l  320 (384)
                      +......  .....+.++.+++.++. +.....   ...+.....+++|++|+++++ +++.++.. .+..+++|++|++
T Consensus       235 ~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l---~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L  308 (353)
T 2z80_A          235 DTFHFSELSTGETNSLIKKFTFRNVK-ITDESL---FQVMKLLNQISGLLELEFSRN-QLKSVPDG-IFDRLTSLQKIWL  308 (353)
T ss_dssp             TTCCCC------CCCCCCEEEEESCB-CCHHHH---HHHHHHHHTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEEC
T ss_pred             ccccccccccccccchhhcccccccc-ccCcch---hhhHHHHhcccCCCEEECCCC-CCCccCHH-HHhcCCCCCEEEe
Confidence            3321111  11234456666666532 211000   000011223778888888775 56665542 2357888888888


Q ss_pred             ccCCCC
Q 016694          321 RQCPTM  326 (384)
Q Consensus       321 ~~c~~l  326 (384)
                      ++|+..
T Consensus       309 ~~N~~~  314 (353)
T 2z80_A          309 HTNPWD  314 (353)
T ss_dssp             CSSCBC
T ss_pred             eCCCcc
Confidence            888543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=5.8e-18  Score=155.73  Aligned_cols=241  Identities=14%  Similarity=0.104  Sum_probs=124.9

Q ss_pred             CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC  110 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  110 (384)
                      .+++|++|++++| +++..++.. ++++++|++|++++| .+.+.++-.           .+++|++|+++++. ++.++
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~-----------~l~~L~~L~Ls~n~-l~~l~   96 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETLDLE-----------SLSTLRTLDLNNNY-VQELL   96 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTS-CCEEEEEET-----------TCTTCCEEECCSSE-EEEEE
T ss_pred             cCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCC-cCCcchhhh-----------hcCCCCEEECcCCc-ccccc
Confidence            4568888888887 667665443 568888888888888 676655411           67788888888776 55554


Q ss_pred             cCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccc
Q 016694          111 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL  187 (384)
Q Consensus       111 ~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~  187 (384)
                      .       .++|++|+++++. ++.++   +++|++|.++++....++              ....+.+++|+.|+++++
T Consensus        97 ~-------~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~--------------~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           97 V-------GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLR--------------DLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             E-------CTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGG--------------GBCTGGGSSEEEEECTTS
T ss_pred             C-------CCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCcc--------------chhhhccCCCCEEECCCC
Confidence            4       4778888887753 33332   334555555443321110              001124556666666655


Q ss_pred             cccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeeccccc
Q 016694          188 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM  267 (384)
Q Consensus       188 ~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~  267 (384)
                       .+..+....+  ...+++|++|+++++. ++.++. ...+++|++|+++++. ++.++  ..+..+++|++|+++++ .
T Consensus       155 -~l~~~~~~~~--~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~--~~~~~l~~L~~L~L~~N-~  225 (317)
T 3o53_A          155 -EIDTVNFAEL--AASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMG--PEFQSAAGVTWISLRNN-K  225 (317)
T ss_dssp             -CCCEEEGGGG--GGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEEC--GGGGGGTTCSEEECTTS-C
T ss_pred             -CCCcccHHHH--hhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCc-CCcch--hhhcccCcccEEECcCC-c
Confidence             3332211110  1234566666666542 444422 2235566666666542 44442  22445556666666653 3


Q ss_pred             ccEecccccCccccceeeecccceeecccCCCC-ceecCCCcccCCCCccEEEeccCCCCC
Q 016694          268 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVRQCPTMK  327 (384)
Q Consensus       268 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~l~~~~~~~~~~~L~~L~l~~c~~l~  327 (384)
                      +..++..        ...+++|+.|++++++-- ..++  .....+++|+++.+.++..++
T Consensus       226 l~~l~~~--------~~~l~~L~~L~l~~N~~~~~~~~--~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          226 LVLIEKA--------LRFSQNLEHFDLRGNGFHCGTLR--DFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CCEECTT--------CCCCTTCCEEECTTCCCBHHHHH--HHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccchhhH--------hhcCCCCCEEEccCCCccCcCHH--HHHhccccceEEECCCchhcc
Confidence            4433221        112455555555554322 1111  123345555555555444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.71  E-value=6.4e-16  Score=141.19  Aligned_cols=244  Identities=16%  Similarity=0.128  Sum_probs=125.8

Q ss_pred             eEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceec--cccccccccc
Q 016694            9 YLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVL--HLEELNADKE   86 (384)
Q Consensus         9 ~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~~~   86 (384)
                      .++.++. .+..+    |..  ..++|++|++++| +++.+++ ..++++++|++|++++| .+....  +....     
T Consensus        11 ~l~c~~~-~l~~i----p~~--~~~~l~~L~L~~n-~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~-----   75 (306)
T 2z66_A           11 EIRCNSK-GLTSV----PTG--IPSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSSN-GLSFKGCCSQSDF-----   75 (306)
T ss_dssp             EEECCSS-CCSSC----CSC--CCTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCEEEEEEHHHH-----
T ss_pred             EEEcCCC-CcccC----CCC--CCCCCCEEECCCC-ccCccCH-hHhhccccCCEEECCCC-ccCcccCcccccc-----
Confidence            4555554 45544    543  2367888888877 5666543 33467788888888877 565432  11111     


Q ss_pred             ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCc
Q 016694           87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQI  166 (384)
Q Consensus        87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l  166 (384)
                          .+++|++|+++++. ++.++.   ....+++|++|+++++. ++.++                           . 
T Consensus        76 ----~~~~L~~L~Ls~n~-i~~l~~---~~~~l~~L~~L~l~~n~-l~~~~---------------------------~-  118 (306)
T 2z66_A           76 ----GTTSLKYLDLSFNG-VITMSS---NFLGLEQLEHLDFQHSN-LKQMS---------------------------E-  118 (306)
T ss_dssp             ----SCSCCCEEECCSCS-EEEEEE---EEETCTTCCEEECTTSE-EESST---------------------------T-
T ss_pred             ----cccccCEEECCCCc-cccChh---hcCCCCCCCEEECCCCc-ccccc---------------------------c-
Confidence                45677777777765 444544   34556666666666641 22110                           0 


Q ss_pred             ccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccc-cccCCcccCCCcCEEEeecCCCCeee
Q 016694          167 QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSKCHGLINV  245 (384)
Q Consensus       167 ~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l  245 (384)
                         +...+.+++|+.|+++++ .+......   ....+++|++|+++++.... .+|..+..+++|++|+++++. ++.+
T Consensus       119 ---~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~  190 (306)
T 2z66_A          119 ---FSVFLSLRNLIYLDISHT-HTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL  190 (306)
T ss_dssp             ---TTTTTTCTTCCEEECTTS-CCEECSTT---TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEE
T ss_pred             ---chhhhhccCCCEEECCCC-cCCccchh---hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCc
Confidence               001114556666666655 22221111   01344555555555543222 234444455555555555542 3332


Q ss_pred             cccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 016694          246 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT  325 (384)
Q Consensus       246 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~  325 (384)
                      . +..+..+++|++|++++                                + .++.+... .+..+++|++|++++|..
T Consensus       191 ~-~~~~~~l~~L~~L~L~~--------------------------------N-~l~~~~~~-~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          191 S-PTAFNSLSSLQVLNMSH--------------------------------N-NFFSLDTF-PYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             C-TTTTTTCTTCCEEECTT--------------------------------S-CCSBCCSG-GGTTCTTCCEEECTTSCC
T ss_pred             C-HHHhcCCCCCCEEECCC--------------------------------C-ccCccChh-hccCcccCCEeECCCCCC
Confidence            1 12233444444444444                                3 23332221 134567788888887754


Q ss_pred             CCccCCCCcCC-CCCeeeccCCC
Q 016694          326 MKIFSQGVVDA-PKLNKVKPTEE  347 (384)
Q Consensus       326 l~~lp~~~~~~-~~L~~l~i~~~  347 (384)
                      ....|..+..+ ++|+++++++|
T Consensus       236 ~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          236 MTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             CBCSSSSCCCCCTTCCEEECTTC
T ss_pred             cccCHHHHHhhhccCCEEEccCC
Confidence            44455555555 47888888887

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=6.5e-17  Score=148.68  Aligned_cols=236  Identities=15%  Similarity=0.118  Sum_probs=163.7

Q ss_pred             CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCc
Q 016694           34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT  113 (384)
Q Consensus        34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  113 (384)
                      .++..+++.+ .+... +..+...+++|++|++++| .+..+++....         .+++|++|+++++. ++.++.  
T Consensus        11 ~l~i~~ls~~-~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n~-l~~~~~--   75 (317)
T 3o53_A           11 RYKIEKVTDS-SLKQA-LASLRQSAWNVKELDLSGN-PLSQISAADLA---------PFTKLELLNLSSNV-LYETLD--   75 (317)
T ss_dssp             EEEEESCCTT-THHHH-HHHHHTTGGGCSEEECTTS-CCCCCCHHHHT---------TCTTCCEEECTTSC-CEEEEE--
T ss_pred             ceeEeecccc-chhhh-HHHHhccCCCCCEEECcCC-ccCcCCHHHhh---------CCCcCCEEECCCCc-CCcchh--
Confidence            3445555554 44443 3344567789999999999 88877654432         78899999999987 444332  


Q ss_pred             ccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccc
Q 016694          114 ENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHL  193 (384)
Q Consensus       114 ~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l  193 (384)
                        ...+++|++|+++++ .++.++                                     ..++|+.|+++++ .+..+
T Consensus        76 --~~~l~~L~~L~Ls~n-~l~~l~-------------------------------------~~~~L~~L~l~~n-~l~~~  114 (317)
T 3o53_A           76 --LESLSTLRTLDLNNN-YVQELL-------------------------------------VGPSIETLHAANN-NISRV  114 (317)
T ss_dssp             --ETTCTTCCEEECCSS-EEEEEE-------------------------------------ECTTCCEEECCSS-CCSEE
T ss_pred             --hhhcCCCCEEECcCC-cccccc-------------------------------------CCCCcCEEECCCC-ccCCc
Confidence              567889999999986 343321                                     3467788887776 44443


Q ss_pred             cccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEec
Q 016694          194 WKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII  272 (384)
Q Consensus       194 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~  272 (384)
                      ..      ..+++|++|+++++. ++.+ +..+..+++|++|+++++. ++.+........+++|++|++++|. +..+.
T Consensus       115 ~~------~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  185 (317)
T 3o53_A          115 SC------SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVK  185 (317)
T ss_dssp             EE------CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred             Cc------cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Ccccc
Confidence            22      236778888888764 4444 3356677888888888864 6555444444567888999998854 55553


Q ss_pred             ccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          273 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      ..         ..+++|++|+++++ .++.++.  .+..+++|++|++++| .++.+|..+..+++|+.+++++|
T Consensus       186 ~~---------~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          186 GQ---------VVFAKLKTLDLSSN-KLAFMGP--EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CC---------CCCTTCCEEECCSS-CCCEECG--GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred             cc---------cccccCCEEECCCC-cCCcchh--hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence            21         13788999999885 5666654  2667899999999888 56788888778899999999988

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=3.4e-15  Score=143.88  Aligned_cols=276  Identities=16%  Similarity=0.147  Sum_probs=154.4

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      ++++|+++++ .+..+    |.   ..++|++|++++| ++++++.     ..++|++|++++| .+.+++.        
T Consensus        72 ~l~~L~l~~~-~l~~l----p~---~~~~L~~L~l~~n-~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~--------  128 (454)
T 1jl5_A           72 QAHELELNNL-GLSSL----PE---LPPHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKALSD--------  128 (454)
T ss_dssp             TCSEEECTTS-CCSCC----CS---CCTTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCCS--------
T ss_pred             CCCEEEecCC-ccccC----CC---CcCCCCEEEccCC-cCCcccc-----ccCCCcEEECCCC-ccCcccC--------
Confidence            4678888888 45554    43   2367888888877 6666542     2377888888887 6665432        


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCcccccccccccc
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                           ..++|++|+++++. ++.+|.    ...+++|++|+++++ .++.+|  +.+|++|+++++....++.   +..+
T Consensus       129 -----~~~~L~~L~L~~n~-l~~lp~----~~~l~~L~~L~l~~N-~l~~lp~~~~~L~~L~L~~n~l~~l~~---~~~l  194 (454)
T 1jl5_A          129 -----LPPLLEYLGVSNNQ-LEKLPE----LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELPE---LQNL  194 (454)
T ss_dssp             -----CCTTCCEEECCSSC-CSSCCC----CTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCC---CTTC
T ss_pred             -----CCCCCCEEECcCCC-CCCCcc----cCCCCCCCEEECCCC-cCcccCCCcccccEEECcCCcCCcCcc---ccCC
Confidence                 22577888887775 555542    566778888888775 344444  3467788777765433221   0000


Q ss_pred             CC----------cccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCE
Q 016694          164 DQ----------IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLAT  233 (384)
Q Consensus       164 ~~----------l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  233 (384)
                      ..          +..+..   ..++|++|+++++ .+..++     ....+++|++|+++++ .++.+|.   .+++|+.
T Consensus       195 ~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n-~l~~lp-----~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~  261 (454)
T 1jl5_A          195 PFLTAIYADNNSLKKLPD---LPLSLESIVAGNN-ILEELP-----ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEA  261 (454)
T ss_dssp             TTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSSCC-----CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCE
T ss_pred             CCCCEEECCCCcCCcCCC---CcCcccEEECcCC-cCCccc-----ccCCCCCCCEEECCCC-cCCcccc---cccccCE
Confidence            00          111111   1235555555554 333322     1245666666666664 3444433   2356677


Q ss_pred             EEeecCCCCeeecccccccccCcccEEeecccccccEecccc--------cCccccceeee-cccceeecccCCCCceec
Q 016694          234 LEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ--------VGEEAKGCVVF-EELGYLGLDCLPSLTSFC  304 (384)
Q Consensus       234 L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--------~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~  304 (384)
                      |+++++. ++.++  .   .+++|++|++++|. +..+....        .+........+ ++|++|+++++ +++.++
T Consensus       262 L~l~~N~-l~~l~--~---~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp  333 (454)
T 1jl5_A          262 LNVRDNY-LTDLP--E---LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP  333 (454)
T ss_dssp             EECCSSC-CSCCC--C---CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC
T ss_pred             EECCCCc-ccccC--c---ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccc
Confidence            7776653 43331  1   23567777777642 43332110        00000001112 35666666553 344432


Q ss_pred             CCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694          305 LGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       305 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~  348 (384)
                           ..+++|++|++++| .++.+|.   .+++|+++++++|.
T Consensus       334 -----~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          334 -----ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             -----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred             -----ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCC
Confidence                 23689999999888 5677887   37899999999885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=2.7e-15  Score=150.42  Aligned_cols=110  Identities=16%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             cCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCC
Q 016694          227 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG  306 (384)
Q Consensus       227 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~  306 (384)
                      .+.+++.++++.+. +... .+.....+++|+.|+++++.....+...       ....+++|++|+++++ +++.+...
T Consensus       443 ~l~~l~~l~ls~n~-l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-------~~~~l~~L~~L~Ls~N-~L~~l~~~  512 (635)
T 4g8a_A          443 SLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPD-------IFTELRNLTFLDLSQC-QLEQLSPT  512 (635)
T ss_dssp             TCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECTTS-CCCEECTT
T ss_pred             cccccccccccccc-cccc-cccccccchhhhhhhhhhcccccccCch-------hhhhccccCEEECCCC-ccCCcChH
Confidence            34445555555432 3322 2334456677888888776544433221       2223789999999987 67777543


Q ss_pred             CcccCCCCccEEEeccCCCCCccCC-CCcCCCCCeeeccCCCC
Q 016694          307 NYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       307 ~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~i~~~~  348 (384)
                       .+..+++|++|++++| +++.++. .+..+++|+++++++|.
T Consensus       513 -~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          513 -AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             -TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred             -HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc
Confidence             3678999999999998 5666654 45678999999999985

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.68  E-value=2.5e-17  Score=164.28  Aligned_cols=135  Identities=12%  Similarity=0.143  Sum_probs=77.7

Q ss_pred             CCCCCceEecCCCcCcceecccCCCC------------CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEeccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALP------------VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD   70 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~------------i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~   70 (384)
                      .+++|++|++.+++.+.++.. .|..            ...+++|++|++++| .+++..+..+...+++|++|++.+|.
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNL-VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             hCCCceEEeccCCCchhhccc-ccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            467888898888765543210 0110            135778888888888 46655455555578888888888885


Q ss_pred             Cccee-cccccccccccccCCcccccceeccCcccccccccc--CcccccCCCCceeEeeccCC-Cccc--cc-----CC
Q 016694           71 SLEEV-LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN--FTENIIEMPELRYLAIENCP-DMET--FI-----SN  139 (384)
Q Consensus        71 ~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~L~~L~l~~c~-~l~~--~~-----~~  139 (384)
                      .+... ....     ..    .+++|++|++++|. ++....  .......+++|++|++++|. .++.  +.     .+
T Consensus       142 ~~~~~~l~~~-----~~----~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~  211 (594)
T 2p1m_B          142 GFSTDGLAAI-----AA----TCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP  211 (594)
T ss_dssp             EEEHHHHHHH-----HH----HCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCT
T ss_pred             CCCHHHHHHH-----HH----hCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCC
Confidence            44321 0111     11    56788888887776 332111  01123356677777777765 2211  11     35


Q ss_pred             CeeEEEecCC
Q 016694          140 SVVHVTTDNK  149 (384)
Q Consensus       140 ~L~~L~i~~~  149 (384)
                      +|++|++.++
T Consensus       212 ~L~~L~L~~~  221 (594)
T 2p1m_B          212 NLKSLKLNRA  221 (594)
T ss_dssp             TCCEEECCTT
T ss_pred             CCcEEecCCC
Confidence            6777777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=1.8e-15  Score=138.22  Aligned_cols=224  Identities=18%  Similarity=0.160  Sum_probs=151.0

Q ss_pred             CCCceEecCCCcCcceecccCCCC-CCCCCCccEEEeecCCCCcccC--chhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALP-VSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~-i~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ++|++|+++++ .+..+    |.. +..+++|++|++++| .++...  +.. ...+++|++|++++| .+..++.... 
T Consensus        28 ~~l~~L~L~~n-~l~~i----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~~l~~~~~-   98 (306)
T 2z66_A           28 SSATRLELESN-KLQSL----PHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFN-GVITMSSNFL-   98 (306)
T ss_dssp             TTCCEEECCSS-CCCCC----CTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSC-SEEEEEEEEE-
T ss_pred             CCCCEEECCCC-ccCcc----CHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCC-ccccChhhcC-
Confidence            58999999999 57665    543 578999999999998 555442  233 457999999999999 7877765432 


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~  161 (384)
                               .+++|++|+++++. ++.++. ......+++|++|+++++. ++..+                        
T Consensus        99 ---------~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~------------------------  142 (306)
T 2z66_A           99 ---------GLEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHTH-TRVAF------------------------  142 (306)
T ss_dssp             ---------TCTTCCEEECTTSE-EESSTT-TTTTTTCTTCCEEECTTSC-CEECS------------------------
T ss_pred             ---------CCCCCCEEECCCCc-cccccc-chhhhhccCCCEEECCCCc-CCccc------------------------
Confidence                     78999999999886 555543 2346678999999998874 22110                        


Q ss_pred             ccCCcccccCCccccCCccEEeccccccccc--ccccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeec
Q 016694          162 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQH--LWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSK  238 (384)
Q Consensus       162 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~  238 (384)
                              ...++.+++|++|+++++. +..  ++.    ....+++|++|+++++. ++.+ |..+..+++|++|++++
T Consensus       143 --------~~~~~~l~~L~~L~l~~n~-l~~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          143 --------NGIFNGLSSLEVLKMAGNS-FQENFLPD----IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             --------TTTTTTCTTCCEEECTTCE-EGGGEECS----CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred             --------hhhcccCcCCCEEECCCCc-cccccchh----HHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCC
Confidence                    0112267888889888873 322  111    13567889999998874 4444 55677888999999988


Q ss_pred             CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeee-cccceeecccC
Q 016694          239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCL  297 (384)
Q Consensus       239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c  297 (384)
                      +. ++.+.. ..+..+++|++|+++++. +......       ....+ ++|++|+++++
T Consensus       209 N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          209 NN-FFSLDT-FPYKCLNSLQVLDYSLNH-IMTSKKQ-------ELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             SC-CSBCCS-GGGTTCTTCCEEECTTSC-CCBCSSS-------SCCCCCTTCCEEECTTC
T ss_pred             Cc-cCccCh-hhccCcccCCEeECCCCC-CcccCHH-------HHHhhhccCCEEEccCC
Confidence            74 555422 234667888888888754 4333211       11113 36666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.66  E-value=2.8e-18  Score=171.16  Aligned_cols=218  Identities=17%  Similarity=0.160  Sum_probs=123.6

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCC-CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      .+++|++|+++++. +...   .+..+. .+++|++|++.+|..++......++.++++|++|++++| .+.+..... .
T Consensus       103 ~~~~L~~L~L~~~~-~~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~-l  176 (594)
T 2p1m_B          103 SYTWLEEIRLKRMV-VTDD---CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHW-L  176 (594)
T ss_dssp             HCTTCCEEEEESCB-CCHH---HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGG-G
T ss_pred             hCCCCCeEEeeCcE-EcHH---HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHH-H
Confidence            46899999999984 4321   022333 589999999999977666444455678999999999999 455432211 1


Q ss_pred             cccccccCCcccccceeccCccc-ccc--ccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCcc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLP-KLK--RFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK  153 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~-~l~--~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~  153 (384)
                      ....    ..+++|++|+++++. .+.  .+..   ....+++|++|++++|..++.++     .++|++|.+..+....
T Consensus       177 ~~~~----~~~~~L~~L~l~~~~~~~~~~~l~~---l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  249 (594)
T 2p1m_B          177 SHFP----DTYTSLVSLNISCLASEVSFSALER---LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV  249 (594)
T ss_dssp             GGSC----TTCCCCCEEECTTCCSCCCHHHHHH---HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCC
T ss_pred             HHHh----hcCCcCcEEEecccCCcCCHHHHHH---HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCcc
Confidence            1111    267899999999885 111  1111   23457999999999987666544     4678888876543210


Q ss_pred             cc----cc-ccccccCCcccc-----------cCCccccCCccEEecccccccccccccccccccccccccEEeeccCcc
Q 016694          154 LT----SE-ENFFLTDQIQPL-----------FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK  217 (384)
Q Consensus       154 ~~----~~-~~~~~~~~l~~l-----------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~  217 (384)
                      ..    .- ..+..|..+..+           ......+++|++|+++++. +......  .....+++|++|++.+|..
T Consensus       250 ~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~--~~~~~~~~L~~L~l~~~~~  326 (594)
T 2p1m_B          250 RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLV--KLLCQCPKLQRLWVLDYIE  326 (594)
T ss_dssp             CHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHH--HHHTTCTTCCEEEEEGGGH
T ss_pred             chhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHH--HHHhcCCCcCEEeCcCccC
Confidence            00    00 011122222211           1111246788888887774 3321000  0013556677777766521


Q ss_pred             cccccCCcccCCCcCEEEe
Q 016694          218 LQKLVTPSWHLENLATLEV  236 (384)
Q Consensus       218 l~~l~~~~~~~~~L~~L~l  236 (384)
                      -..++.....+++|++|++
T Consensus       327 ~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          327 DAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEE
Confidence            1112111223556666666

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=1.5e-15  Score=147.69  Aligned_cols=78  Identities=21%  Similarity=0.201  Sum_probs=53.4

Q ss_pred             CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC  110 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  110 (384)
                      .+++|++|++++| .+++.++.. ++.+++|++|++++| .+.+.++..           .+++|++|+++++. ++.++
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~l~-----------~l~~L~~L~Ls~N~-l~~l~   96 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETLDLE-----------SLSTLRTLDLNNNY-VQELL   96 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCCGGG-GTTCTTCCEEECTTS-CCEEEEECT-----------TCTTCCEEECCSSE-EEEEE
T ss_pred             cCCCccEEEeeCC-cCCCCCHHH-HhCCCCCCEEEeeCC-CCCCCcccc-----------cCCCCCEEEecCCc-CCCCC
Confidence            3458888888887 667665543 468888888888888 676655411           67778888887775 55554


Q ss_pred             cCcccccCCCCceeEeeccC
Q 016694          111 NFTENIIEMPELRYLAIENC  130 (384)
Q Consensus       111 ~~~~~~~~~~~L~~L~l~~c  130 (384)
                      .       .++|++|++++|
T Consensus        97 ~-------~~~L~~L~L~~N  109 (487)
T 3oja_A           97 V-------GPSIETLHAANN  109 (487)
T ss_dssp             E-------CTTCCEEECCSS
T ss_pred             C-------CCCcCEEECcCC
Confidence            4       366777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=1.5e-17  Score=165.81  Aligned_cols=159  Identities=10%  Similarity=-0.010  Sum_probs=81.3

Q ss_pred             cccccccEEeeccCcccccccCCcccCCCcCEEEeec----------CCCCeeecccccccccCcccEEeecccccccEe
Q 016694          202 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK----------CHGLINVLTLSTSESLVNLGRMKIADCKMIEQI  271 (384)
Q Consensus       202 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~----------c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~  271 (384)
                      ..+++|++|++.++..-..++.....+++|++|++++          |+.+++......+..+++|++|+++ |..+...
T Consensus       315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~  393 (592)
T 3ogk_B          315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNE  393 (592)
T ss_dssp             TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHH
T ss_pred             HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHH
Confidence            3455555555553211112222223456666666664          5555543333334456777777773 3333211


Q ss_pred             cccccCccccceeeecccceeeccc---CCCCceecCC----CcccCCCCccEEEeccCCC-CCc-cCCCC-cCCCCCee
Q 016694          272 IQLQVGEEAKGCVVFEELGYLGLDC---LPSLTSFCLG----NYALEFPSLEHVVVRQCPT-MKI-FSQGV-VDAPKLNK  341 (384)
Q Consensus       272 ~~~~~~~~~~~~~~~~~L~~L~l~~---c~~L~~l~~~----~~~~~~~~L~~L~l~~c~~-l~~-lp~~~-~~~~~L~~  341 (384)
                      ..      ......+++|++|++..   |..+++.+..    .....+++|++|+++.|.. ++. .+..+ ..+++|++
T Consensus       394 ~~------~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~  467 (592)
T 3ogk_B          394 SL------ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW  467 (592)
T ss_dssp             HH------HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred             HH------HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence            10      00111266788887763   4556553221    1134578888888877653 221 11112 23678888


Q ss_pred             eccCCCCCCCCccccCCchHHHHHHHHhhccccccc
Q 016694          342 VKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKEKI  377 (384)
Q Consensus       342 l~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  377 (384)
                      ++++.|.       ..   ...+..++..+++++.+
T Consensus       468 L~L~~n~-------l~---~~~~~~~~~~~~~L~~L  493 (592)
T 3ogk_B          468 MLLGYVG-------ES---DEGLMEFSRGCPNLQKL  493 (592)
T ss_dssp             EEECSCC-------SS---HHHHHHHHTCCTTCCEE
T ss_pred             eeccCCC-------CC---HHHHHHHHhcCcccCee
Confidence            8888771       11   23566666666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.65  E-value=4.5e-15  Score=134.12  Aligned_cols=221  Identities=16%  Similarity=0.143  Sum_probs=124.0

Q ss_pred             ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694            8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   87 (384)
                      +.++..+. .+..+    |..  ..++|++|+++++ +++.+++.. ++.+++|++|++++| .+.++.+....      
T Consensus        14 ~~~~c~~~-~l~~i----p~~--~~~~l~~L~l~~n-~i~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~~------   77 (285)
T 1ozn_A           14 VTTSCPQQ-GLQAV----PVG--IPAASQRIFLHGN-RISHVPAAS-FRACRNLTILWLHSN-VLARIDAAAFT------   77 (285)
T ss_dssp             CEEECCSS-CCSSC----CTT--CCTTCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTTT------
T ss_pred             eEEEcCcC-CcccC----CcC--CCCCceEEEeeCC-cCCccCHHH-cccCCCCCEEECCCC-ccceeCHhhcC------
Confidence            34555554 45554    543  3568889999887 677765443 468888999999888 77777554432      


Q ss_pred             cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcc
Q 016694           88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ  167 (384)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~  167 (384)
                         .+++|++|+++++..++.++.  .....+++|++|+++++. ++.++.                             
T Consensus        78 ---~l~~L~~L~l~~n~~l~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~-----------------------------  122 (285)
T 1ozn_A           78 ---GLALLEQLDLSDNAQLRSVDP--ATFHGLGRLHTLHLDRCG-LQELGP-----------------------------  122 (285)
T ss_dssp             ---TCTTCCEEECCSCTTCCCCCT--TTTTTCTTCCEEECTTSC-CCCCCT-----------------------------
T ss_pred             ---CccCCCEEeCCCCCCccccCH--HHhcCCcCCCEEECCCCc-CCEECH-----------------------------
Confidence               678888998888865666643  245667888888888863 222210                             


Q ss_pred             cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeec
Q 016694          168 PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVL  246 (384)
Q Consensus       168 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~  246 (384)
                         ..++.+++|++|+++++ .+..+....   ...+++|++|+++++ .++.++. .+..+++|++|+++++. ++.+.
T Consensus       123 ---~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~  193 (285)
T 1ozn_A          123 ---GLFRGLAALQYLYLQDN-ALQALPDDT---FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVH  193 (285)
T ss_dssp             ---TTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred             ---hHhhCCcCCCEEECCCC-cccccCHhH---hccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccC
Confidence               01114555666666554 233322111   134556666666654 3444433 24555666666666653 33331


Q ss_pred             ccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccC
Q 016694          247 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL  297 (384)
Q Consensus       247 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  297 (384)
                       +..+..+++|++|+++++ .+..++..       ....+++|++|+++++
T Consensus       194 -~~~~~~l~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          194 -PHAFRDLGRLMTLYLFAN-NLSALPTE-------ALAPLRALQYLRLNDN  235 (285)
T ss_dssp             -TTTTTTCTTCCEEECCSS-CCSCCCHH-------HHTTCTTCCEEECCSS
T ss_pred             -HhHccCcccccEeeCCCC-cCCcCCHH-------HcccCcccCEEeccCC
Confidence             223345566666666653 23332211       1112556666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.65  E-value=2.7e-17  Score=164.01  Aligned_cols=136  Identities=13%  Similarity=0.095  Sum_probs=70.1

Q ss_pred             ccccccEEeeccCccccc-ccCCcc-cCCCcCEEEeec---CCCCeeec----ccccccccCcccEEeeccccc-ccEec
Q 016694          203 AFANLIRLKISECSKLQK-LVTPSW-HLENLATLEVSK---CHGLINVL----TLSTSESLVNLGRMKIADCKM-IEQII  272 (384)
Q Consensus       203 ~~~~L~~L~l~~~~~l~~-l~~~~~-~~~~L~~L~l~~---c~~l~~l~----~~~~~~~l~~L~~L~l~~c~~-l~~~~  272 (384)
                      .+++|++|++. |..++. .+..+. .+++|+.|++++   |+.+++.+    ....+..+++|++|+++.|.. +... 
T Consensus       376 ~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~-  453 (592)
T 3ogk_B          376 GCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL-  453 (592)
T ss_dssp             HCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH-
T ss_pred             hCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH-
Confidence            35566666662 233321 111222 256666666663   34444421    112234566777777765442 1110 


Q ss_pred             ccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCc--cCCCCcCCCCCeeeccCCC
Q 016694          273 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI--FSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~--lp~~~~~~~~L~~l~i~~~  347 (384)
                           +.......+++|++|++++|. +++.........+++|++|++++|+ ++.  ++.....+++|+++++++|
T Consensus       454 -----~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          454 -----GLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             -----HHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             -----HHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence                 000111126677777777653 4432221223567888888888887 432  3333345788888888888

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=1.7e-15  Score=147.47  Aligned_cols=100  Identities=20%  Similarity=0.255  Sum_probs=79.9

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|++|+++++ .+..+   .|..++.+++|++|++++| .+++.++   ++.+++|++|++++| .+..++      
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~------   96 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQI---SAADLAPFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNN-YVQELL------   96 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCC---CGGGGTTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSS-EEEEEE------
T ss_pred             cCCCccEEEeeCC-cCCCC---CHHHHhCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCC-cCCCCC------
Confidence            3468999999999 56654   1456889999999999998 6777655   578999999999999 787765      


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                              ..++|++|+++++. ++.++.     ..+++|+.|+++++.
T Consensus        97 --------~~~~L~~L~L~~N~-l~~~~~-----~~l~~L~~L~L~~N~  131 (487)
T 3oja_A           97 --------VGPSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANNK  131 (487)
T ss_dssp             --------ECTTCCEEECCSSC-CCCEEE-----CCCSSCEEEECCSSC
T ss_pred             --------CCCCcCEEECcCCc-CCCCCc-----cccCCCCEEECCCCC
Confidence                    34789999999987 665554     357899999999864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=3.1e-15  Score=131.61  Aligned_cols=101  Identities=16%  Similarity=0.123  Sum_probs=50.5

Q ss_pred             EEeeccCcccccccCC-cccCCCcC-EEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeee
Q 016694          209 RLKISECSKLQKLVTP-SWHLENLA-TLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF  286 (384)
Q Consensus       209 ~L~l~~~~~l~~l~~~-~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  286 (384)
                      +|++++++.++.++.. +..+++|+ .|+++++ .++.++.. .+.. ++|++|+++++..++.++..       ....+
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~~~-------~~~~l  203 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY-AFNG-TKLDAVYLNKNKYLTVIDKD-------AFGGV  203 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTT-TTTT-CEEEEEECTTCTTCCEECTT-------TTTTC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHh-hcCC-CCCCEEEcCCCCCcccCCHH-------Hhhcc
Confidence            5666555445554432 44556666 6666654 24444221 1122 56666666664345544322       01114


Q ss_pred             -cccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 016694          287 -EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP  324 (384)
Q Consensus       287 -~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~  324 (384)
                       ++|+.|++++ ..++.++.    ..+++|++|.+.++.
T Consensus       204 ~~~L~~L~l~~-N~l~~l~~----~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          204 YSGPSLLDVSQ-TSVTALPS----KGLEHLKELIARNTW  237 (239)
T ss_dssp             SBCCSEEECTT-CCCCCCCC----TTCTTCSEEECTTC-
T ss_pred             ccCCcEEECCC-CccccCCh----hHhccCceeeccCcc
Confidence             5666666665 34555433    146667777766654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.64  E-value=7.8e-15  Score=132.58  Aligned_cols=222  Identities=15%  Similarity=0.084  Sum_probs=123.7

Q ss_pred             cEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCccc
Q 016694           36 RHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN  115 (384)
Q Consensus        36 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  115 (384)
                      ++++.++. .++.+|.    +-.++|++|+++++ .+..+++....         .+++|++|+++++. ++.+..  ..
T Consensus        14 ~~~~c~~~-~l~~ip~----~~~~~l~~L~l~~n-~i~~~~~~~~~---------~~~~L~~L~l~~n~-l~~~~~--~~   75 (285)
T 1ozn_A           14 VTTSCPQQ-GLQAVPV----GIPAASQRIFLHGN-RISHVPAASFR---------ACRNLTILWLHSNV-LARIDA--AA   75 (285)
T ss_dssp             CEEECCSS-CCSSCCT----TCCTTCSEEECTTS-CCCEECTTTTT---------TCTTCCEEECCSSC-CCEECT--TT
T ss_pred             eEEEcCcC-CcccCCc----CCCCCceEEEeeCC-cCCccCHHHcc---------cCCCCCEEECCCCc-cceeCH--hh
Confidence            45565554 4555532    12367777777777 66666544322         56677777777664 444422  14


Q ss_pred             ccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccc
Q 016694          116 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK  195 (384)
Q Consensus       116 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~  195 (384)
                      ...+++|++|+++++..++.++.                                ..++.+++|++|+++++ .+..+..
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~~~--------------------------------~~~~~l~~L~~L~l~~n-~l~~~~~  122 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSVDP--------------------------------ATFHGLGRLHTLHLDRC-GLQELGP  122 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCT--------------------------------TTTTTCTTCCEEECTTS-CCCCCCT
T ss_pred             cCCccCCCEEeCCCCCCccccCH--------------------------------HHhcCCcCCCEEECCCC-cCCEECH
Confidence            45567777777777643442210                                01125667777777766 3333221


Q ss_pred             cccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEeccc
Q 016694          196 ENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQL  274 (384)
Q Consensus       196 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  274 (384)
                      ..   ...+++|++|+++++ .++.++.. +..+++|++|+++++ .++.++. ..+..+++|++|+++++. +..+...
T Consensus       123 ~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~  195 (285)
T 1ozn_A          123 GL---FRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE-RAFRGLHSLDRLLLHQNR-VAHVHPH  195 (285)
T ss_dssp             TT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred             hH---hhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCH-HHhcCccccCEEECCCCc-ccccCHh
Confidence            11   245677777777775 34444433 556777777777775 3555422 234566777777777743 4444221


Q ss_pred             ccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 016694          275 QVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP  324 (384)
Q Consensus       275 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~  324 (384)
                             ....+++|+.|+++++ .++.++.. .+..+++|++|++++++
T Consensus       196 -------~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          196 -------AFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             -------TTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred             -------HccCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCC
Confidence                   1112667777777764 44444321 24456777777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=9.4e-15  Score=136.12  Aligned_cols=242  Identities=14%  Similarity=0.116  Sum_probs=149.6

Q ss_pred             eEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCc-ceecccccccccccc
Q 016694            9 YLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL-EEVLHLEELNADKEH   87 (384)
Q Consensus         9 ~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~   87 (384)
                      .++-++. ++.+|    |..+  .+++++|+|++| +++.+++. .++++++|++|++++| .+ +.++...+.      
T Consensus        13 ~v~C~~~-~Lt~i----P~~l--~~~l~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~------   76 (350)
T 4ay9_X           13 VFLCQES-KVTEI----PSDL--PRNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQN-DVLEVIEADVFS------   76 (350)
T ss_dssp             EEEEEST-TCCSC----CTTC--CTTCSEEEEESC-CCSEECTT-SSTTCTTCCEEEEECC-TTCCEECTTSBC------
T ss_pred             EEEecCC-CCCcc----CcCc--CCCCCEEEccCC-cCCCcCHH-HHcCCCCCCEEECcCC-CCCCccChhHhh------
Confidence            3343443 45555    6543  357788888877 66766443 2457778888888877 44 334333321      


Q ss_pred             cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcc
Q 016694           88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ  167 (384)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~  167 (384)
                         .++++.++.+.++..++.++.  .....+++|++|+++++. ++.++..                            
T Consensus        77 ---~L~~l~~~l~~~~N~l~~l~~--~~f~~l~~L~~L~l~~n~-l~~~~~~----------------------------  122 (350)
T 4ay9_X           77 ---NLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNTG-IKHLPDV----------------------------  122 (350)
T ss_dssp             ---SCTTCCEEEEEEETTCCEECT--TSBCCCTTCCEEEEEEEC-CSSCCCC----------------------------
T ss_pred             ---cchhhhhhhcccCCcccccCc--hhhhhccccccccccccc-cccCCch----------------------------
Confidence               455666655554555666654  234567777777777642 3322100                            


Q ss_pred             cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecc
Q 016694          168 PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT  247 (384)
Q Consensus       168 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  247 (384)
                          ......++..+++.++..+..++...+.  .....++.|+++++ .++.++.......+|+++.+.+++.++.++.
T Consensus       123 ----~~~~~~~l~~l~l~~~~~i~~l~~~~f~--~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~  195 (350)
T 4ay9_X          123 ----HKIHSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPN  195 (350)
T ss_dssp             ----TTCCBSSCEEEEEESCTTCCEECTTSST--TSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred             ----hhcccchhhhhhhccccccccccccchh--hcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCH
Confidence                0003445667777666566655443221  22346778888874 5777777666667888888888777777732


Q ss_pred             cccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 016694          248 LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ  322 (384)
Q Consensus       248 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~  322 (384)
                       ..+..+++|++|+++++ .++.++..          .+.+|++|.+.++.+++.++.   ...+++|+.+++..
T Consensus       196 -~~f~~l~~L~~LdLs~N-~l~~lp~~----------~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          196 -DVFHGASGPVILDISRT-RIHSLPSY----------GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY  255 (350)
T ss_dssp             -TTTTTEECCSEEECTTS-CCCCCCSS----------SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred             -HHhccCcccchhhcCCC-CcCccChh----------hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence             34567888888888874 56666532          277888888888888888764   56788888888754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=2.1e-14  Score=133.69  Aligned_cols=251  Identities=14%  Similarity=0.117  Sum_probs=180.2

Q ss_pred             CCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccc
Q 016694           26 ALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPK  105 (384)
Q Consensus        26 p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  105 (384)
                      |..++.+.. ++++.++. +++.+|. .+   .+++++|++++| .++.+++..+.         .+++|++|+++++..
T Consensus         3 p~~~C~C~~-~~v~C~~~-~Lt~iP~-~l---~~~l~~L~Ls~N-~i~~i~~~~f~---------~l~~L~~L~Ls~N~i   66 (350)
T 4ay9_X            3 HHRICHCSN-RVFLCQES-KVTEIPS-DL---PRNAIELRFVLT-KLRVIQKGAFS---------GFGDLEKIEISQNDV   66 (350)
T ss_dssp             CCSSSEEET-TEEEEEST-TCCSCCT-TC---CTTCSEEEEESC-CCSEECTTSST---------TCTTCCEEEEECCTT
T ss_pred             CCCccEeeC-CEEEecCC-CCCccCc-Cc---CCCCCEEEccCC-cCCCcCHHHHc---------CCCCCCEEECcCCCC
Confidence            444555544 67788776 7888753 22   268999999999 89999876543         789999999999986


Q ss_pred             ccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecc
Q 016694          106 LKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS  185 (384)
Q Consensus       106 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~  185 (384)
                      ++.++.  .....++++.++.+..+..++.++..                                .++.+++|+.|+++
T Consensus        67 ~~~i~~--~~f~~L~~l~~~l~~~~N~l~~l~~~--------------------------------~f~~l~~L~~L~l~  112 (350)
T 4ay9_X           67 LEVIEA--DVFSNLPKLHEIRIEKANNLLYINPE--------------------------------AFQNLPNLQYLLIS  112 (350)
T ss_dssp             CCEECT--TSBCSCTTCCEEEEEEETTCCEECTT--------------------------------SBCCCTTCCEEEEE
T ss_pred             CCccCh--hHhhcchhhhhhhcccCCcccccCch--------------------------------hhhhcccccccccc
Confidence            666654  23456777777766666666644211                                12268899999998


Q ss_pred             cccccccccccccccccccccccEEeeccCcccccccCC-cccC-CCcCEEEeecCCCCeeecccccccccCcccEEeec
Q 016694          186 RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHL-ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA  263 (384)
Q Consensus       186 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~  263 (384)
                      ++ .+..++...   .....++..|++.++..+..++.. +... ..++.|+++++ .++.++  ..+....+|+++.+.
T Consensus       113 ~n-~l~~~~~~~---~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~--~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          113 NT-GIKHLPDVH---KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH--NSAFNGTQLDELNLS  185 (350)
T ss_dssp             EE-CCSSCCCCT---TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEEC--TTSSTTEEEEEEECT
T ss_pred             cc-ccccCCchh---hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCC--hhhccccchhHHhhc
Confidence            87 455443321   134557888999888888887653 3333 46888999986 577773  334456789999999


Q ss_pred             ccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeec
Q 016694          264 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVK  343 (384)
Q Consensus       264 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~  343 (384)
                      +++.++.++..       ....+++|++|+++++ +++.++..    .+..|++|.+.+|..++.+|. +..+++|+.++
T Consensus       186 ~~n~l~~i~~~-------~f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~  252 (350)
T 4ay9_X          186 DNNNLEELPND-------VFHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT-LEKLVALMEAS  252 (350)
T ss_dssp             TCTTCCCCCTT-------TTTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred             cCCcccCCCHH-------HhccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence            88888877643       1223899999999985 78888652    378899999999999999994 56789999999


Q ss_pred             cCC
Q 016694          344 PTE  346 (384)
Q Consensus       344 i~~  346 (384)
                      +.+
T Consensus       253 l~~  255 (350)
T 4ay9_X          253 LTY  255 (350)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=6.1e-15  Score=134.87  Aligned_cols=188  Identities=19%  Similarity=0.263  Sum_probs=95.5

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +++|++|++.++ .+..+    + .+..+++|++|++++| .++++++   +.++++|++|++++| .+..++...    
T Consensus        40 l~~L~~L~l~~~-~i~~l----~-~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~----  104 (308)
T 1h6u_A           40 LDGITTLSAFGT-GVTTI----E-GVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNVSAIA----  104 (308)
T ss_dssp             HHTCCEEECTTS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCCGGGT----
T ss_pred             cCCcCEEEeeCC-CccCc----h-hhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCchhhc----
Confidence            345555555555 34432    2 2445555555555555 4444433   345555555555555 444442111    


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                             .+++|++|+++++. ++.++.    ...+++|++|+++++. ++.++                          
T Consensus       105 -------~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n~-l~~~~--------------------------  145 (308)
T 1h6u_A          105 -------GLQSIKTLDLTSTQ-ITDVTP----LAGLSNLQVLYLDLNQ-ITNIS--------------------------  145 (308)
T ss_dssp             -------TCTTCCEEECTTSC-CCCCGG----GTTCTTCCEEECCSSC-CCCCG--------------------------
T ss_pred             -------CCCCCCEEECCCCC-CCCchh----hcCCCCCCEEECCCCc-cCcCc--------------------------
Confidence                   45555555555554 333322    3445555555555541 22110                          


Q ss_pred             CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCe
Q 016694          164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI  243 (384)
Q Consensus       164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  243 (384)
                          .    .+.+++|+.|+++++ .+..+..     ...+++|+.|+++++ .++.++. +..+++|+.|+++++. ++
T Consensus       146 ----~----l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~-l~  208 (308)
T 1h6u_A          146 ----P----LAGLTNLQYLSIGNA-QVSDLTP-----LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-IS  208 (308)
T ss_dssp             ----G----GGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CC
T ss_pred             ----c----ccCCCCccEEEccCC-cCCCChh-----hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCc-cC
Confidence                0    124666677776665 3333211     245666777777665 3444433 5566667777777653 44


Q ss_pred             eecccccccccCcccEEeeccc
Q 016694          244 NVLTLSTSESLVNLGRMKIADC  265 (384)
Q Consensus       244 ~l~~~~~~~~l~~L~~L~l~~c  265 (384)
                      .+.   .+..+++|+.|+++++
T Consensus       209 ~~~---~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          209 DVS---PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             BCG---GGTTCTTCCEEEEEEE
T ss_pred             ccc---cccCCCCCCEEEccCC
Confidence            442   1455666777777664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=1.2e-14  Score=127.89  Aligned_cols=203  Identities=12%  Similarity=0.098  Sum_probs=134.6

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      .+|++|++++| +++.+++.. ++++++|++|++++|..++.+++....         .+++|++|+++++..++.++. 
T Consensus        31 ~~l~~L~l~~n-~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~~~f~---------~l~~L~~L~l~~~n~l~~i~~-   98 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPSHA-FSNLPNISRIYVSIDVTLQQLESHSFY---------NLSKVTHIEIRNTRNLTYIDP-   98 (239)
T ss_dssp             TTCCEEEEESC-CCSEECTTT-TTTCTTCCEEEEECCSSCCEECTTTEE---------SCTTCCEEEEEEETTCCEECT-
T ss_pred             CcccEEEEeCC-cceEECHHH-ccCCCCCcEEeCCCCCCcceeCHhHcC---------CCcCCcEEECCCCCCeeEcCH-
Confidence            47888898887 677775533 567888999999888337777664432         678888888887555777664 


Q ss_pred             cccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCcc---EEecccccc
Q 016694          113 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR---YLELSRLHK  189 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~---~L~l~~~~~  189 (384)
                       .....+++|++|+++++. ++.+|                           .       ++.+++|+   .|+++++..
T Consensus        99 -~~f~~l~~L~~L~l~~n~-l~~lp---------------------------~-------~~~l~~L~~L~~L~l~~N~~  142 (239)
T 2xwt_C           99 -DALKELPLLKFLGIFNTG-LKMFP---------------------------D-------LTKVYSTDIFFILEITDNPY  142 (239)
T ss_dssp             -TSEECCTTCCEEEEEEEC-CCSCC---------------------------C-------CTTCCBCCSEEEEEEESCTT
T ss_pred             -HHhCCCCCCCEEeCCCCC-Ccccc---------------------------c-------cccccccccccEEECCCCcc
Confidence             234568888889888863 33222                           0       11345555   888877755


Q ss_pred             ccccccccccccccccccc-EEeeccCcccccccCCcccCCCcCEEEeecCCCCeeeccccccccc-CcccEEeeccccc
Q 016694          190 VQHLWKENDESNKAFANLI-RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL-VNLGRMKIADCKM  267 (384)
Q Consensus       190 l~~l~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~l~~c~~  267 (384)
                      +..++...   ...+++|+ +|+++++ .++.+|......++|++|+++++..++.++. ..+..+ ++|++|++++ +.
T Consensus       143 l~~i~~~~---~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~-N~  216 (239)
T 2xwt_C          143 MTSIPVNA---FQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQ-TS  216 (239)
T ss_dssp             CCEECTTT---TTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTT-CC
T ss_pred             hhhcCccc---ccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCC-Cc
Confidence            65553322   25677888 8888775 4566766544447888888888755766632 344567 8888888887 44


Q ss_pred             ccEecccccCccccceeeecccceeecccCCC
Q 016694          268 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS  299 (384)
Q Consensus       268 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  299 (384)
                      ++.++..          .+++|+.|++.++..
T Consensus       217 l~~l~~~----------~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          217 VTALPSK----------GLEHLKELIARNTWT  238 (239)
T ss_dssp             CCCCCCT----------TCTTCSEEECTTC--
T ss_pred             cccCChh----------HhccCceeeccCccC
Confidence            5544322          388888888887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.61  E-value=1.6e-14  Score=129.81  Aligned_cols=83  Identities=12%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      ++|++|++++| +++.+++.. +.++++|++|++++| .+..+++....         .+++|++|+++++. ++.++. 
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~L~~n~-l~~~~~-   93 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYS-FFSFPELQVLDLSRC-EIQTIEDGAYQ---------SLSHLSTLILTGNP-IQSLAL-   93 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTT-TTTCTTCSEEECTTC-CCCEECTTTTT---------TCTTCCEEECTTCC-CCEECT-
T ss_pred             CCccEEECCCC-cccccCHhH-hccccCCcEEECCCC-cCCccCHHHcc---------CCcCCCEEECCCCc-cCccCh-
Confidence            45666666665 555554322 345666666666666 55555443321         45666666666654 333332 


Q ss_pred             cccccCCCCceeEeeccC
Q 016694          113 TENIIEMPELRYLAIENC  130 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c  130 (384)
                       .....+++|++|+++++
T Consensus        94 -~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           94 -GAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             -TTTTTCTTCCEEECTTS
T ss_pred             -hhhcCCccccEEECCCC
Confidence             13445666666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.60  E-value=2e-16  Score=145.10  Aligned_cols=258  Identities=14%  Similarity=0.116  Sum_probs=151.8

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc-c--ccccccCCcccccceeccCccccc
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL-N--ADKEHIGPLFPKLFELTLMDLPKL  106 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~L~~L~l~~~~~l  106 (384)
                      +..++|++|++++| .+ .+ |..+...   |++|+++++ .+....-.... .  ....    .+++|++|+++++..-
T Consensus        40 ~~~~~L~~l~l~~n-~l-~~-p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~----~l~~L~~L~L~~n~l~  108 (312)
T 1wwl_A           40 GGGRSLEYLLKRVD-TE-AD-LGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVL----GISGLQELTLENLEVT  108 (312)
T ss_dssp             EEEEECTTHHHHCC-TT-CC-CHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHH----TTSCCCEEEEEEEBCB
T ss_pred             ccCCCceeEeeccc-cc-cc-HHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhc----CcCCccEEEccCCccc
Confidence            45667888888887 44 44 4333322   777778777 55432111100 0  0000    3678888888888733


Q ss_pred             cccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccc
Q 016694          107 KRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR  186 (384)
Q Consensus       107 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~  186 (384)
                      ..++. ......+++|++|+++++. ++..| .                         .+..+..  ...++|++|++++
T Consensus       109 ~~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~-~-------------------------~~~~l~~--~~~~~L~~L~L~~  158 (312)
T 1wwl_A          109 GTAPP-PLLEATGPDLNILNLRNVS-WATRD-A-------------------------WLAELQQ--WLKPGLKVLSIAQ  158 (312)
T ss_dssp             SCCCC-CSSSCCSCCCSEEEEESCB-CSSSS-S-------------------------HHHHHHT--TCCTTCCEEEEES
T ss_pred             chhHH-HHHHhcCCCccEEEccCCC-Ccchh-H-------------------------HHHHHHH--hhcCCCcEEEeeC
Confidence            34544 1112678888888888853 33221 0                         0000000  0126788888877


Q ss_pred             ccccccccccccccccccccccEEeeccCccccc--ccCCc--ccCCCcCEEEeecCCCCeeec--ccccccccCcccEE
Q 016694          187 LHKVQHLWKENDESNKAFANLIRLKISECSKLQK--LVTPS--WHLENLATLEVSKCHGLINVL--TLSTSESLVNLGRM  260 (384)
Q Consensus       187 ~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~--~~~~~L~~L~l~~c~~l~~l~--~~~~~~~l~~L~~L  260 (384)
                      + .+..+....   ...+++|++|+++++.....  ++..+  ..+++|++|+++++. ++.+.  ....+..+++|++|
T Consensus       159 N-~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L  233 (312)
T 1wwl_A          159 A-HSLNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGL  233 (312)
T ss_dssp             C-SCCCCCTTT---CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEE
T ss_pred             C-CCccchHHH---hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEE
Confidence            6 344432221   25677888888887654332  22223  677888888888874 55331  11233467889999


Q ss_pred             eecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCe
Q 016694          261 KIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLN  340 (384)
Q Consensus       261 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~  340 (384)
                      +++++. +...+..      .....+++|++|+++++ .++.++..  ..  ++|++|+++++ +++.+|. +..+++|+
T Consensus       234 ~Ls~N~-l~~~~~~------~~~~~l~~L~~L~Ls~N-~l~~ip~~--~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~  299 (312)
T 1wwl_A          234 DLSHNS-LRDAAGA------PSCDWPSQLNSLNLSFT-GLKQVPKG--LP--AKLSVLDLSYN-RLDRNPS-PDELPQVG  299 (312)
T ss_dssp             ECTTSC-CCSSCCC------SCCCCCTTCCEEECTTS-CCSSCCSS--CC--SEEEEEECCSS-CCCSCCC-TTTSCEEE
T ss_pred             ECCCCc-CCcccch------hhhhhcCCCCEEECCCC-ccChhhhh--cc--CCceEEECCCC-CCCCChh-HhhCCCCC
Confidence            998854 4433211      01122688999999885 56655442  22  79999999887 5677776 67789999


Q ss_pred             eeccCCC
Q 016694          341 KVKPTEE  347 (384)
Q Consensus       341 ~l~i~~~  347 (384)
                      ++++++|
T Consensus       300 ~L~L~~N  306 (312)
T 1wwl_A          300 NLSLKGN  306 (312)
T ss_dssp             EEECTTC
T ss_pred             EEeccCC
Confidence            9999988

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=5.6e-16  Score=143.39  Aligned_cols=228  Identities=18%  Similarity=0.138  Sum_probs=128.4

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCC--CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCccee-ccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFF--NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV-LHLEELN   82 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l--~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~   82 (384)
                      .++.++++++. +.      +..+..+  ++++.|++.++ .+.+.++.  +.++++|++|++++| .+... .+..   
T Consensus        48 ~~~~l~l~~~~-~~------~~~~~~~~~~~l~~L~l~~n-~l~~~~~~--~~~~~~L~~L~L~~~-~l~~~~~~~~---  113 (336)
T 2ast_B           48 LWQTLDLTGKN-LH------PDVTGRLLSQGVIAFRCPRS-FMDQPLAE--HFSPFRVQHMDLSNS-VIEVSTLHGI---  113 (336)
T ss_dssp             TSSEEECTTCB-CC------HHHHHHHHHTTCSEEECTTC-EECSCCCS--CCCCBCCCEEECTTC-EECHHHHHHH---
T ss_pred             hheeecccccc-CC------HHHHHhhhhccceEEEcCCc-cccccchh--hccCCCCCEEEccCC-CcCHHHHHHH---
Confidence            36677777662 22      1123344  67888888876 45554443  346788888888887 45431 1111   


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccc
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL  162 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~  162 (384)
                        ..    .+++|++|+++++..-...+.   .+..+++|++|++++|..+++.                          
T Consensus       114 --~~----~~~~L~~L~L~~~~l~~~~~~---~l~~~~~L~~L~L~~~~~l~~~--------------------------  158 (336)
T 2ast_B          114 --LS----QCSKLQNLSLEGLRLSDPIVN---TLAKNSNLVRLNLSGCSGFSEF--------------------------  158 (336)
T ss_dssp             --HT----TBCCCSEEECTTCBCCHHHHH---HHTTCTTCSEEECTTCBSCCHH--------------------------
T ss_pred             --Hh----hCCCCCEEeCcCcccCHHHHH---HHhcCCCCCEEECCCCCCCCHH--------------------------
Confidence              11    677888888887752222332   4456788888888887655531                          


Q ss_pred             cCCcccccCCccccCCccEEecccccccccccccccccccccc-cccEEeeccCc-cc--ccccCCcccCCCcCEEEeec
Q 016694          163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA-NLIRLKISECS-KL--QKLVTPSWHLENLATLEVSK  238 (384)
Q Consensus       163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~-~L~~L~l~~~~-~l--~~l~~~~~~~~~L~~L~l~~  238 (384)
                        .+..+   .+.+++|++|++++|..+......  .....++ +|++|++++|. .+  ..++..+..+++|++|++++
T Consensus       159 --~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~  231 (336)
T 2ast_B          159 --ALQTL---LSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  231 (336)
T ss_dssp             --HHHHH---HHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             --HHHHH---HhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence              00111   114667777777776444431000  0124566 77777777764 23  23444455677777777777


Q ss_pred             CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccC
Q 016694          239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL  297 (384)
Q Consensus       239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  297 (384)
                      |..+++.. ...+..+++|++|++++|..+...      + ......+++|++|++++|
T Consensus       232 ~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~------~-~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          232 SVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPE------T-LLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGG------G-GGGGGGCTTCCEEECTTS
T ss_pred             CCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHH------H-HHHHhcCCCCCEEeccCc
Confidence            76444332 223456677778887776533211      0 001123777888888777

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=5e-14  Score=127.62  Aligned_cols=199  Identities=15%  Similarity=0.053  Sum_probs=141.3

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++++++++.++ .+..+    |..+  .+++++|++++| +++.+++.. +.++++|++|++++| .+..++...  
T Consensus         7 ~~l~~l~~l~~~~~-~l~~i----p~~~--~~~l~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~--   74 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTAL----PPDL--PKDTTILHLSEN-LLYTFSLAT-LMPYTRLTQLNLDRA-ELTKLQVDG--   74 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSC----CSCC--CTTCCEEECTTS-CCSEEEGGG-GTTCTTCCEEECTTS-CCCEEECCS--
T ss_pred             cccCCccEEECCCC-CCCcC----CCCC--CCCCCEEEcCCC-cCCccCHHH-hhcCCCCCEEECCCC-ccCcccCCC--
Confidence            35788999999887 67766    6554  378999999998 677765443 568999999999999 788776542  


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~  161 (384)
                               .+++|++|+++++. ++.++.   ....+++|++|+++++ .++.++.                       
T Consensus        75 ---------~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~l~~N-~l~~l~~-----------------------  117 (290)
T 1p9a_G           75 ---------TLPVLGTLDLSHNQ-LQSLPL---LGQTLPALTVLDVSFN-RLTSLPL-----------------------  117 (290)
T ss_dssp             ---------CCTTCCEEECCSSC-CSSCCC---CTTTCTTCCEEECCSS-CCCCCCS-----------------------
T ss_pred             ---------CCCcCCEEECCCCc-CCcCch---hhccCCCCCEEECCCC-cCcccCH-----------------------
Confidence                     78899999999886 666765   5667888999988885 3332210                       


Q ss_pred             ccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCc-ccCCCcCEEEeecCC
Q 016694          162 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKCH  240 (384)
Q Consensus       162 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~  240 (384)
                               ..++.+++|+.|+++++ .+..++...   ...+++|+.|+++++ .++.+|... ..+++|+.|+++++.
T Consensus       118 ---------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          118 ---------GALRGLGELQELYLKGN-ELKTLPPGL---LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             ---------STTTTCTTCCEEECTTS-CCCCCCTTT---TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------HHHcCCCCCCEEECCCC-CCCccChhh---cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence                     01226778888888877 455543321   246778888888875 466776543 568888888888864


Q ss_pred             CCeeecccccccccCcccEEeecccc
Q 016694          241 GLINVLTLSTSESLVNLGRMKIADCK  266 (384)
Q Consensus       241 ~l~~l~~~~~~~~l~~L~~L~l~~c~  266 (384)
                       ++.+  +..+...++|+.+++++++
T Consensus       184 -l~~i--p~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          184 -LYTI--PKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             -CCCC--CTTTTTTCCCSEEECCSCC
T ss_pred             -CCcc--ChhhcccccCCeEEeCCCC
Confidence             6655  4445566788888887643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=2.5e-16  Score=145.71  Aligned_cols=247  Identities=14%  Similarity=0.117  Sum_probs=159.7

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcC--CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc--
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCL--NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR--  108 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--  108 (384)
                      ..++.++++++ .+.   + ..+..+  ++++.|++.++ .+.+.++...          .+++|++|+++++. +..  
T Consensus        47 ~~~~~l~l~~~-~~~---~-~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~----------~~~~L~~L~L~~~~-l~~~~  109 (336)
T 2ast_B           47 SLWQTLDLTGK-NLH---P-DVTGRLLSQGVIAFRCPRS-FMDQPLAEHF----------SPFRVQHMDLSNSV-IEVST  109 (336)
T ss_dssp             TTSSEEECTTC-BCC---H-HHHHHHHHTTCSEEECTTC-EECSCCCSCC----------CCBCCCEEECTTCE-ECHHH
T ss_pred             hhheeeccccc-cCC---H-HHHHhhhhccceEEEcCCc-cccccchhhc----------cCCCCCEEEccCCC-cCHHH
Confidence            35788888876 333   2 234566  88999999988 6665544432          67889999999886 432  


Q ss_pred             cccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694          109 FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH  188 (384)
Q Consensus       109 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~  188 (384)
                      ++.   ....+++|++|++++|. ++..                                .+...+.+++|++|++++|.
T Consensus       110 ~~~---~~~~~~~L~~L~L~~~~-l~~~--------------------------------~~~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B          110 LHG---ILSQCSKLQNLSLEGLR-LSDP--------------------------------IVNTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             HHH---HHTTBCCCSEEECTTCB-CCHH--------------------------------HHHHHTTCTTCSEEECTTCB
T ss_pred             HHH---HHhhCCCCCEEeCcCcc-cCHH--------------------------------HHHHHhcCCCCCEEECCCCC
Confidence            433   45678899999998874 3311                                00011257889999999886


Q ss_pred             cccccccccccc-ccccccccEEeeccCccccc--ccCCcccCC-CcCEEEeecCC-CCeeecccccccccCcccEEeec
Q 016694          189 KVQHLWKENDES-NKAFANLIRLKISECSKLQK--LVTPSWHLE-NLATLEVSKCH-GLINVLTLSTSESLVNLGRMKIA  263 (384)
Q Consensus       189 ~l~~l~~~~~~~-~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~-~L~~L~l~~c~-~l~~l~~~~~~~~l~~L~~L~l~  263 (384)
                      .+....   ++. ...+++|++|++++|..++.  ++..+..++ +|++|++++|. .+++...+..+..+++|++|+++
T Consensus       154 ~l~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          154 GFSEFA---LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  230 (336)
T ss_dssp             SCCHHH---HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             CCCHHH---HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence            555310   111 25688999999999855653  455567788 99999999985 45433234456678999999999


Q ss_pred             ccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCC-CCCee
Q 016694          264 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDA-PKLNK  341 (384)
Q Consensus       264 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~-~~L~~  341 (384)
                      +|..++....       .....+++|++|++++|..+..-... .+..+++|++|++++|     ++... ..+ ..++.
T Consensus       231 ~~~~l~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~  297 (336)
T 2ast_B          231 DSVMLKNDCF-------QEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPH  297 (336)
T ss_dssp             TCTTCCGGGG-------GGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTT
T ss_pred             CCCcCCHHHH-------HHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcc
Confidence            8764432111       12223689999999998755443321 2556899999999988     33321 222 23555


Q ss_pred             eccCCCC
Q 016694          342 VKPTEEE  348 (384)
Q Consensus       342 l~i~~~~  348 (384)
                      ++++.+.
T Consensus       298 L~l~~n~  304 (336)
T 2ast_B          298 LQINCSH  304 (336)
T ss_dssp             SEESCCC
T ss_pred             eEEeccc
Confidence            5566653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.59  E-value=2.3e-17  Score=159.38  Aligned_cols=164  Identities=15%  Similarity=0.056  Sum_probs=81.7

Q ss_pred             ccCCccEEeccccccccccccccccc--ccccccccEEeeccCccccc-----ccCCcccCCCcCEEEeecCCCCeeecc
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDES--NKAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKCHGLINVLT  247 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~~--~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~l~~  247 (384)
                      .+++|++|+++++ .+.......+..  ...+++|++|++++| .++.     ++..+..+++|++|+++++. +++...
T Consensus       225 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~  301 (461)
T 1z7x_W          225 SKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGA  301 (461)
T ss_dssp             HCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHH
T ss_pred             hCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHH
Confidence            4566666666665 232211000000  013566777777666 3333     44444556677777777653 332211


Q ss_pred             cccc----cccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCC---ccc-CCCCccEEE
Q 016694          248 LSTS----ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN---YAL-EFPSLEHVV  319 (384)
Q Consensus       248 ~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~---~~~-~~~~L~~L~  319 (384)
                      ....    ...++|++|++++|. +......   ........+++|++|+++++ .+++.....   ... ..++|++|+
T Consensus       302 ~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~---~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          302 RLLCETLLEPGCQLESLWVKSCS-FTAACCS---HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSC-CBGGGHH---HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             HHHHHHhccCCccceeeEcCCCC-CchHHHH---HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEE
Confidence            1111    122467777777654 2211000   00111122577777777765 444432110   011 156888888


Q ss_pred             eccCCCCC-----ccCCCCcCCCCCeeeccCCC
Q 016694          320 VRQCPTMK-----IFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       320 l~~c~~l~-----~lp~~~~~~~~L~~l~i~~~  347 (384)
                      +++|. ++     .+|..+..+++|+++++++|
T Consensus       377 L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          377 LADCD-VSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             CTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             CCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence            88874 44     56665556788888888877

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.56  E-value=1.6e-13  Score=122.90  Aligned_cols=84  Identities=23%  Similarity=0.274  Sum_probs=42.2

Q ss_pred             ccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccc
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSES  253 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~  253 (384)
                      .+++|+.|+++++ .+..++...   ...+++|++|+++++ .++.++. .+..+++|++|+++++ .++.++ +..+..
T Consensus       131 ~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~  203 (270)
T 2o6q_A          131 SLTKLTYLSLGYN-ELQSLPKGV---FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVP-EGAFDS  203 (270)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTT
T ss_pred             cCcCCCEEECCCC-cCCccCHhH---ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCC-HHHhcc
Confidence            4566666666655 333332211   134566666666654 3444433 2445566666666665 344432 122345


Q ss_pred             cCcccEEeeccc
Q 016694          254 LVNLGRMKIADC  265 (384)
Q Consensus       254 l~~L~~L~l~~c  265 (384)
                      +++|+.|+++++
T Consensus       204 l~~L~~L~l~~N  215 (270)
T 2o6q_A          204 LEKLKMLQLQEN  215 (270)
T ss_dssp             CTTCCEEECCSS
T ss_pred             ccCCCEEEecCC
Confidence            566666666553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.56  E-value=3.6e-14  Score=127.39  Aligned_cols=194  Identities=21%  Similarity=0.231  Sum_probs=113.4

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF  109 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  109 (384)
                      ..+++|+.|++.+| .++..+.   ++.+++|++|++++| .+..++...           .+++|++|+++++. ++.+
T Consensus        38 ~~l~~L~~L~l~~~-~i~~~~~---l~~l~~L~~L~l~~n-~l~~~~~l~-----------~l~~L~~L~L~~n~-l~~~  100 (272)
T 3rfs_A           38 NELNSIDQIIANNS-DIKSVQG---IQYLPNVRYLALGGN-KLHDISALK-----------ELTNLTYLILTGNQ-LQSL  100 (272)
T ss_dssp             HHHTTCCEEECTTS-CCCCCTT---GGGCTTCCEEECTTS-CCCCCGGGT-----------TCTTCCEEECTTSC-CCCC
T ss_pred             ccccceeeeeeCCC-Ccccccc---cccCCCCcEEECCCC-CCCCchhhc-----------CCCCCCEEECCCCc-cCcc
Confidence            45677777777776 4554432   356777777777777 565543211           56777777777765 5554


Q ss_pred             ccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694          110 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK  189 (384)
Q Consensus       110 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~  189 (384)
                      +.  .....+++|++|++++|. ++.++.                                ..++.+++|+.|+++++ .
T Consensus       101 ~~--~~~~~l~~L~~L~L~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~L~~n-~  144 (272)
T 3rfs_A          101 PN--GVFDKLTNLKELVLVENQ-LQSLPD--------------------------------GVFDKLTNLTYLNLAHN-Q  144 (272)
T ss_dssp             CT--TTTTTCTTCCEEECTTSC-CCCCCT--------------------------------TTTTTCTTCCEEECCSS-C
T ss_pred             Ch--hHhcCCcCCCEEECCCCc-CCccCH--------------------------------HHhccCCCCCEEECCCC-c
Confidence            43  123567777777777752 222210                                00125667777777766 4


Q ss_pred             cccccccccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccc
Q 016694          190 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI  268 (384)
Q Consensus       190 l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l  268 (384)
                      +..+....   ...+++|++|++++| .++.+++. +..+++|+.|+++++. ++.++ +..+..+++|++|++++++ +
T Consensus       145 l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-~  217 (272)
T 3rfs_A          145 LQSLPKGV---FDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDNP-W  217 (272)
T ss_dssp             CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSC-B
T ss_pred             cCccCHHH---hccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-CCccC-HHHHhCCcCCCEEEccCCC-c
Confidence            44432211   245677777777776 35555443 4567777777777764 54442 2334567777888777754 1


Q ss_pred             cEecccccCccccceeeecccceeecccC
Q 016694          269 EQIIQLQVGEEAKGCVVFEELGYLGLDCL  297 (384)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  297 (384)
                      .   ..           +|+|+.|++..+
T Consensus       218 ~---~~-----------~~~l~~l~~~~n  232 (272)
T 3rfs_A          218 D---CT-----------CPGIRYLSEWIN  232 (272)
T ss_dssp             C---CC-----------TTTTHHHHHHHH
T ss_pred             c---cc-----------CcHHHHHHHHHH
Confidence            1   11           566777766554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.56  E-value=2.9e-14  Score=130.66  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=50.3

Q ss_pred             CCCCccEEEeecCCCCcccCchhH-HhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANL-IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF  109 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  109 (384)
                      .+++|++|++++| ++++..|..+ ++.+++|++|++++| .+.+.+..... ....    ..++|++|+++++. ++.+
T Consensus        93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-l~~~----~~~~L~~L~L~~N~-l~~~  164 (312)
T 1wwl_A           93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAE-LQQW----LKPGLKVLSIAQAH-SLNF  164 (312)
T ss_dssp             TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHH-HHTT----CCTTCCEEEEESCS-CCCC
T ss_pred             CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHH-HHHh----hcCCCcEEEeeCCC-Cccc
Confidence            4667777777776 4554334332 256777777777777 56555321110 0000    12667777777665 4444


Q ss_pred             ccCcccccCCCCceeEeeccCC
Q 016694          110 CNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus       110 ~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                      +.  .....+++|++|+++++.
T Consensus       165 ~~--~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          165 SC--EQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             CT--TTCCCCSSCCEEECCSCT
T ss_pred             hH--HHhccCCCCCEEECCCCC
Confidence            42  244566777777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=2.5e-16  Score=152.12  Aligned_cols=128  Identities=18%  Similarity=0.231  Sum_probs=70.5

Q ss_pred             CCCceEecCCCcCccee-cccCCCCCCCCCCccEEEeecCCCCcccC---chhHHhcCCCCCEEEEecccCcceeccccc
Q 016694            5 RDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEVRNCDSLEEVLHLEE   80 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i-~~~~p~~i~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (384)
                      ++|++|+++++ .+... |.   ..+..+++|++|++++| .+.+..   ....+..+++|++|++++| .+.+......
T Consensus         3 ~~l~~L~Ls~~-~l~~~~~~---~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l   76 (461)
T 1z7x_W            3 LDIQSLDIQCE-ELSDARWA---ELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCV   76 (461)
T ss_dssp             EEEEEEEEESC-CCCHHHHH---HHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHH
T ss_pred             ccceehhhhhc-ccCchhHH---HHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHH
Confidence            56777888777 34321 11   11345777888888877 445321   1223456778888888877 5543211110


Q ss_pred             ccccccccCCccc----ccceeccCcccccc-----ccccCcccccCCCCceeEeeccCCCccccc-----------CCC
Q 016694           81 LNADKEHIGPLFP----KLFELTLMDLPKLK-----RFCNFTENIIEMPELRYLAIENCPDMETFI-----------SNS  140 (384)
Q Consensus        81 ~~~~~~~~~~~~~----~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----------~~~  140 (384)
                      .    .    .++    +|++|++++|. ++     .++.   ....+++|++|+++++. ++...           ..+
T Consensus        77 ~----~----~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~---~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~  143 (461)
T 1z7x_W           77 L----Q----GLQTPSCKIQKLSLQNCC-LTGAGCGVLSS---TLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCR  143 (461)
T ss_dssp             H----H----TTCSTTCCCCEEECTTSC-CBGGGHHHHHH---HTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCC
T ss_pred             H----H----HHhhCCCceeEEEccCCC-CCHHHHHHHHH---HHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCc
Confidence            0    0    222    57777777775 33     2222   44567777777777764 32210           124


Q ss_pred             eeEEEecCCCC
Q 016694          141 VVHVTTDNKEP  151 (384)
Q Consensus       141 L~~L~i~~~~~  151 (384)
                      |++|+++++..
T Consensus       144 L~~L~L~~n~l  154 (461)
T 1z7x_W          144 LEKLQLEYCSL  154 (461)
T ss_dssp             CCEEECTTSCC
T ss_pred             ceEEECCCCCC
Confidence            77777776653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.53  E-value=2.4e-13  Score=121.75  Aligned_cols=193  Identities=15%  Similarity=0.126  Sum_probs=130.7

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      +.+.+++++. .+..+    |..+  .++|++|++++| +++.+++.. ++++++|++|++++| .+..+++..+.    
T Consensus        17 ~~~~l~~~~~-~l~~i----p~~~--~~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~i~~~~~~----   82 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAI----PSNI--PADTKKLDLQSN-KLSSLPSKA-FHRLTKLRLLYLNDN-KLQTLPAGIFK----   82 (270)
T ss_dssp             TTTEEECTTS-CCSSC----CSCC--CTTCSEEECCSS-CCSCCCTTS-SSSCTTCCEEECCSS-CCSCCCTTTTS----
T ss_pred             CCCEEEccCC-CCCcc----CCCC--CCCCCEEECcCC-CCCeeCHHH-hcCCCCCCEEECCCC-ccCeeChhhhc----
Confidence            4667777776 55555    5443  367888888887 666665433 467888888888888 67766654422    


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCcccccccc
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEEN  159 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~  159 (384)
                           .+++|++|+++++. ++.++.  .....+++|++|+++++. ++.++      .++|++|+++++....++.   
T Consensus        83 -----~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---  150 (270)
T 2o6q_A           83 -----ELKNLETLWVTDNK-LQALPI--GVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPK---  150 (270)
T ss_dssp             -----SCTTCCEEECCSSC-CCCCCT--TTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT---
T ss_pred             -----CCCCCCEEECCCCc-CCcCCH--hHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCH---
Confidence                 57788888888776 555554  234567888888888753 33332      3567888887765322111   


Q ss_pred             ccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeec
Q 016694          160 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSK  238 (384)
Q Consensus       160 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~  238 (384)
                                 ..++.+++|++|+++++ .+..+....   ...+++|++|+++++ .++.++.. +..+++|+.|++++
T Consensus       151 -----------~~~~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          151 -----------GVFDKLTSLKELRLYNN-QLKRVPEGA---FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             -----------TTTTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -----------hHccCCcccceeEecCC-cCcEeChhH---hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence                       01236899999999987 555543321   256899999999997 56777654 66789999999998


Q ss_pred             CC
Q 016694          239 CH  240 (384)
Q Consensus       239 c~  240 (384)
                      ++
T Consensus       215 N~  216 (270)
T 2o6q_A          215 NP  216 (270)
T ss_dssp             SC
T ss_pred             CC
Confidence            75

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=5.6e-14  Score=128.56  Aligned_cols=209  Identities=18%  Similarity=0.159  Sum_probs=116.1

Q ss_pred             CCCccEEEeecCCCCcccCchhHH-hcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694           32 FNNLRHLVVDDCTNMLSAIPANLI-RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC  110 (384)
Q Consensus        32 l~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  110 (384)
                      +++|++|++++| .+.+..+..++ +.+++|++|++++| .+....+.... ....    .+++|++|+++++. +..++
T Consensus        90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~-~~~~----~~~~L~~L~Ls~n~-l~~~~  161 (310)
T 4glp_A           90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAE-LQQW----LKPGLKVLSIAQAH-SPAFS  161 (310)
T ss_dssp             HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHH-HHTT----BCSCCCEEEEECCS-SCCCC
T ss_pred             cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHH-HHhh----hccCCCEEEeeCCC-cchhh
Confidence            456888888887 55555554432 57788888888887 55542211000 0001    46778888887776 44444


Q ss_pred             cCcccccCCCCceeEeeccCCCccc--ccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694          111 NFTENIIEMPELRYLAIENCPDMET--FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH  188 (384)
Q Consensus       111 ~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~  188 (384)
                      .  .....+++|++|+++++.....  ++.                               ....+.+++|++|+++++ 
T Consensus       162 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------------~~~~~~l~~L~~L~Ls~N-  207 (310)
T 4glp_A          162 C--EQVRAFPALTSLDLSDNPGLGERGLMA-------------------------------ALCPHKFPAIQNLALRNT-  207 (310)
T ss_dssp             T--TSCCCCTTCCEEECCSCTTCHHHHHHT-------------------------------TSCTTSSCCCCSCBCCSS-
T ss_pred             H--HHhccCCCCCEEECCCCCCccchhhhH-------------------------------HHhhhcCCCCCEEECCCC-
Confidence            2  2445677888888887643221  100                               000125667777777776 


Q ss_pred             ccccccccccccccccccccEEeeccCcccccccCCcccC---CCcCEEEeecCCCCeeecccccccccCcccEEeeccc
Q 016694          189 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHL---ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC  265 (384)
Q Consensus       189 ~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~---~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c  265 (384)
                      +++.+..........+++|++|+++++..-...|..+..+   ++|++|+++++. ++.+  +...  .++|++|+++++
T Consensus       208 ~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~l--p~~~--~~~L~~L~Ls~N  282 (310)
T 4glp_A          208 GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQV--PKGL--PAKLRVLDLSSN  282 (310)
T ss_dssp             CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSC--CSCC--CSCCSCEECCSC
T ss_pred             CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCch--hhhh--cCCCCEEECCCC
Confidence            4433211100001355777788887764333335555554   578888887763 5544  2222  267788888774


Q ss_pred             ccccEecccccCccccceeeecccceeecccC
Q 016694          266 KMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL  297 (384)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  297 (384)
                       .+..++.         ...+++|+.|++++.
T Consensus       283 -~l~~~~~---------~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          283 -RLNRAPQ---------PDELPEVDNLTLDGN  304 (310)
T ss_dssp             -CCCSCCC---------TTSCCCCSCEECSST
T ss_pred             -cCCCCch---------hhhCCCccEEECcCC
Confidence             3443321         112677888887764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.49  E-value=3.3e-13  Score=123.30  Aligned_cols=169  Identities=16%  Similarity=0.257  Sum_probs=129.5

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++|++|+++++ .+..+    +. +..+++|++|++++| .+++.+.   +..+++|++|++++| .+..+++..  
T Consensus        60 ~~l~~L~~L~L~~n-~i~~~----~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~l~--  126 (308)
T 1h6u_A           60 QYLNNLIGLELKDN-QITDL----AP-LKNLTKITELELSGN-PLKNVSA---IAGLQSIKTLDLTST-QITDVTPLA--  126 (308)
T ss_dssp             GGCTTCCEEECCSS-CCCCC----GG-GTTCCSCCEEECCSC-CCSCCGG---GTTCTTCCEEECTTS-CCCCCGGGT--
T ss_pred             hccCCCCEEEccCC-cCCCC----hh-HccCCCCCEEEccCC-cCCCchh---hcCCCCCCEEECCCC-CCCCchhhc--
Confidence            45789999999999 66665    44 789999999999999 5777632   578999999999999 788775422  


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~  161 (384)
                               .+++|++|+++++. ++.++.    ...+++|+.|++++| .++.++                        
T Consensus       127 ---------~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n-~l~~~~------------------------  167 (308)
T 1h6u_A          127 ---------GLSNLQVLYLDLNQ-ITNISP----LAGLTNLQYLSIGNA-QVSDLT------------------------  167 (308)
T ss_dssp             ---------TCTTCCEEECCSSC-CCCCGG----GGGCTTCCEEECCSS-CCCCCG------------------------
T ss_pred             ---------CCCCCCEEECCCCc-cCcCcc----ccCCCCccEEEccCC-cCCCCh------------------------
Confidence                     78999999999986 555543    567889999999886 333221                        


Q ss_pred             ccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694          162 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       162 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  240 (384)
                            .    .+.+++|+.|+++++ .+..+..     ...+++|++|+++++ .+..++ .+..+++|+.|++++++
T Consensus       168 ------~----l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          168 ------P----LANLSKLTTLKADDN-KISDISP-----LASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             ------G----GTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred             ------h----hcCCCCCCEEECCCC-ccCcChh-----hcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCCe
Confidence                  1    226888999999887 4544322     467889999999987 466665 37889999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.49  E-value=8.6e-13  Score=119.47  Aligned_cols=200  Identities=17%  Similarity=0.137  Sum_probs=139.8

Q ss_pred             CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694           29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR  108 (384)
Q Consensus        29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  108 (384)
                      +..+++++.++++++ +++.+|+.    -.+++++|++++| .+..+++....         .+++|++|+++++. ++.
T Consensus         6 ~~~l~~l~~l~~~~~-~l~~ip~~----~~~~l~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~n~-l~~   69 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLTALPPD----LPKDTTILHLSEN-LLYTFSLATLM---------PYTRLTQLNLDRAE-LTK   69 (290)
T ss_dssp             EECSTTCCEEECTTS-CCSSCCSC----CCTTCCEEECTTS-CCSEEEGGGGT---------TCTTCCEEECTTSC-CCE
T ss_pred             ccccCCccEEECCCC-CCCcCCCC----CCCCCCEEEcCCC-cCCccCHHHhh---------cCCCCCEEECCCCc-cCc
Confidence            457889999999987 77877543    2378999999999 78877655433         78899999999876 666


Q ss_pred             cccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694          109 FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH  188 (384)
Q Consensus       109 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~  188 (384)
                      ++.   . ..+++|++|+++++ .++.+|                                 ...+.+++|+.|+++++ 
T Consensus        70 ~~~---~-~~l~~L~~L~Ls~N-~l~~l~---------------------------------~~~~~l~~L~~L~l~~N-  110 (290)
T 1p9a_G           70 LQV---D-GTLPVLGTLDLSHN-QLQSLP---------------------------------LLGQTLPALTVLDVSFN-  110 (290)
T ss_dssp             EEC---C-SCCTTCCEEECCSS-CCSSCC---------------------------------CCTTTCTTCCEEECCSS-
T ss_pred             ccC---C-CCCCcCCEEECCCC-cCCcCc---------------------------------hhhccCCCCCEEECCCC-
Confidence            665   2 57888888888885 333221                                 12236888999999887 


Q ss_pred             ccccccccccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeeccccc
Q 016694          189 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM  267 (384)
Q Consensus       189 ~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~  267 (384)
                      .+..++...   ...+++|++|+++++ .++.+|.. +..+++|+.|+++++ .++.++ ...+..+++|+.|+++++ .
T Consensus       111 ~l~~l~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N-~  183 (290)
T 1p9a_G          111 RLTSLPLGA---LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLENLDTLLLQEN-S  183 (290)
T ss_dssp             CCCCCCSST---TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTTCCEEECCSS-C
T ss_pred             cCcccCHHH---HcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccC-HHHhcCcCCCCEEECCCC-c
Confidence            555543322   356789999999986 56666554 467889999999986 466653 234567889999999884 4


Q ss_pred             ccEecccccCccccceeeecccceeecccCC
Q 016694          268 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLP  298 (384)
Q Consensus       268 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  298 (384)
                      +..++..        ....++|+.|++.+.+
T Consensus       184 l~~ip~~--------~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          184 LYTIPKG--------FFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCCCTT--------TTTTCCCSEEECCSCC
T ss_pred             CCccChh--------hcccccCCeEEeCCCC
Confidence            6555432        1125578888887543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.48  E-value=4.9e-12  Score=113.50  Aligned_cols=202  Identities=17%  Similarity=0.190  Sum_probs=100.5

Q ss_pred             CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccC
Q 016694           59 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS  138 (384)
Q Consensus        59 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  138 (384)
                      ++|++|++++| .+..+++....         .+++|++|+++++. ++.++.  .....+++|++|+++++. ++.++.
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~L~~n~-l~~~~~   93 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSFF---------SFPELQVLDLSRCE-IQTIED--GAYQSLSHLSTLILTGNP-IQSLAL   93 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTT---------TCTTCSEEECTTCC-CCEECT--TTTTTCTTCCEEECTTCC-CCEECT
T ss_pred             CCccEEECCCC-cccccCHhHhc---------cccCCcEEECCCCc-CCccCH--HHccCCcCCCEEECCCCc-cCccCh
Confidence            46788888777 67666553322         56677777777664 444433  133445666666666542 221100


Q ss_pred             CCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCccc
Q 016694          139 NSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKL  218 (384)
Q Consensus       139 ~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l  218 (384)
                                                      ..++.+++|++|+++++ .+..+..                       
T Consensus        94 --------------------------------~~~~~l~~L~~L~l~~n-~l~~~~~-----------------------  117 (276)
T 2z62_A           94 --------------------------------GAFSGLSSLQKLVAVET-NLASLEN-----------------------  117 (276)
T ss_dssp             --------------------------------TTTTTCTTCCEEECTTS-CCCCSTT-----------------------
T ss_pred             --------------------------------hhhcCCccccEEECCCC-CccccCc-----------------------
Confidence                                            00114555555555554 2222211                       


Q ss_pred             ccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccc----eeec
Q 016694          219 QKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELG----YLGL  294 (384)
Q Consensus       219 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~----~L~l  294 (384)
                          ..+..+++|++|+++++. ++.+..+..+..+++|++|+++++ .+..+...       ....+++|+    +|++
T Consensus       118 ----~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          118 ----FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT-------DLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             ----CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGG-------GGHHHHTCTTCCEEEEC
T ss_pred             ----hhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHH-------Hhhhhhhccccceeeec
Confidence                123344445555554432 333222333444555555555553 23333211       011133333    4555


Q ss_pred             ccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeeeccCCC
Q 016694          295 DCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE  347 (384)
Q Consensus       295 ~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l~i~~~  347 (384)
                      +++ .++.++..  .....+|++|++++|. ++.+|... ..+++|+++++++|
T Consensus       185 s~n-~l~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          185 SLN-PMNFIQPG--AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CSS-CCCEECTT--SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred             CCC-cccccCcc--ccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence            543 34444332  2234478888887774 66666553 45778888888877

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.46  E-value=4.3e-13  Score=120.32  Aligned_cols=228  Identities=17%  Similarity=0.183  Sum_probs=153.7

Q ss_pred             CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC  110 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  110 (384)
                      .+..+..+++.++ .+.+...   ...+++|++|++.+| .+..++...           .+++|++|+++++. ++.++
T Consensus        17 ~~~~l~~l~l~~~-~~~~~~~---~~~l~~L~~L~l~~~-~i~~~~~l~-----------~l~~L~~L~l~~n~-l~~~~   79 (272)
T 3rfs_A           17 AFAETIKANLKKK-SVTDAVT---QNELNSIDQIIANNS-DIKSVQGIQ-----------YLPNVRYLALGGNK-LHDIS   79 (272)
T ss_dssp             HHHHHHHHHHTCS-CTTSEEC---HHHHTTCCEEECTTS-CCCCCTTGG-----------GCTTCCEEECTTSC-CCCCG
T ss_pred             hHHHHHHHHhcCc-ccccccc---cccccceeeeeeCCC-Ccccccccc-----------cCCCCcEEECCCCC-CCCch
Confidence            4455666666665 4444433   357899999999999 777665432           78899999999886 55543


Q ss_pred             cCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccc
Q 016694          111 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV  190 (384)
Q Consensus       111 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l  190 (384)
                          ....+++|++|++++| .++.++.                                ..++.+++|++|+++++ .+
T Consensus        80 ----~l~~l~~L~~L~L~~n-~l~~~~~--------------------------------~~~~~l~~L~~L~L~~n-~l  121 (272)
T 3rfs_A           80 ----ALKELTNLTYLILTGN-QLQSLPN--------------------------------GVFDKLTNLKELVLVEN-QL  121 (272)
T ss_dssp             ----GGTTCTTCCEEECTTS-CCCCCCT--------------------------------TTTTTCTTCCEEECTTS-CC
T ss_pred             ----hhcCCCCCCEEECCCC-ccCccCh--------------------------------hHhcCCcCCCEEECCCC-cC
Confidence                3567889999999886 3332210                                01226889999999987 45


Q ss_pred             ccccccccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeeccccccc
Q 016694          191 QHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIE  269 (384)
Q Consensus       191 ~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~  269 (384)
                      ..+....   ...+++|++|++++| .++.+++. +..+++|+.|++++|. ++.++ +..+..+++|+.|++++|. +.
T Consensus       122 ~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~  194 (272)
T 3rfs_A          122 QSLPDGV---FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLP-EGVFDKLTQLKDLRLYQNQ-LK  194 (272)
T ss_dssp             CCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CS
T ss_pred             CccCHHH---hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccC-HHHhcCCccCCEEECCCCc-CC
Confidence            5443221   256789999999987 56666554 4688999999999974 66552 2345678999999999854 55


Q ss_pred             EecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCC
Q 016694          270 QIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA  336 (384)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~  336 (384)
                      .++..       ....+++|++|++++++-         ...++.|+++.+..+.....+|..++.+
T Consensus       195 ~~~~~-------~~~~l~~L~~L~l~~N~~---------~~~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          195 SVPDG-------VFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CCCTT-------TTTTCTTCCEEECCSSCB---------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             ccCHH-------HHhCCcCCCEEEccCCCc---------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence            44322       112378888888887642         2347788888877776666777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=6.5e-13  Score=120.35  Aligned_cols=169  Identities=20%  Similarity=0.262  Sum_probs=114.7

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF  109 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  109 (384)
                      ..+++|++|++++| .+.+++.   ++.+++|++|++++| .+.++++..           .+++|++|+++++. ++.+
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~l~-----------~l~~L~~L~l~~n~-l~~~  105 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKPLA-----------NLKNLGWLFLDENK-VKDL  105 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGGGT-----------TCTTCCEEECCSSC-CCCG
T ss_pred             hhcCcccEEEccCC-CcccChh---HhcCCCCCEEEccCC-ccCCCcccc-----------cCCCCCEEECCCCc-CCCC
Confidence            46778888888887 6666533   467888888888888 777665411           67788888888776 5554


Q ss_pred             ccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694          110 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK  189 (384)
Q Consensus       110 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~  189 (384)
                      +.    ...+++|++|++++|. ++.++                                  ..+.+++|+.|+++++ .
T Consensus       106 ~~----l~~l~~L~~L~L~~n~-i~~~~----------------------------------~l~~l~~L~~L~l~~n-~  145 (291)
T 1h6t_A          106 SS----LKDLKKLKSLSLEHNG-ISDIN----------------------------------GLVHLPQLESLYLGNN-K  145 (291)
T ss_dssp             GG----GTTCTTCCEEECTTSC-CCCCG----------------------------------GGGGCTTCCEEECCSS-C
T ss_pred             hh----hccCCCCCEEECCCCc-CCCCh----------------------------------hhcCCCCCCEEEccCC-c
Confidence            42    5667788888887762 33111                                  1125777888888776 4


Q ss_pred             cccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccc
Q 016694          190 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK  266 (384)
Q Consensus       190 l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~  266 (384)
                      +..+     +....+++|+.|++++| .++.+++ +..+++|+.|+++++ .++++  + .+..+++|+.|+++++.
T Consensus       146 l~~~-----~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l--~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          146 ITDI-----TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDL--R-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CCCC-----GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBC--G-GGTTCTTCSEEEEEEEE
T ss_pred             CCcc-----hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCC--h-hhccCCCCCEEECcCCc
Confidence            4443     12366788888888876 4555544 677888888888886 46665  2 25678888888888754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.41  E-value=1.6e-13  Score=125.53  Aligned_cols=231  Identities=16%  Similarity=0.158  Sum_probs=149.4

Q ss_pred             CCccEEEeecCCCCcccCchhH--HhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694           33 NNLRHLVVDDCTNMLSAIPANL--IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC  110 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  110 (384)
                      ..++.+.+.++ .+.......+  ...+++|++|++++| .+.+..+.....   .    .+++|++|+++++..-...+
T Consensus        64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~---~----~~~~L~~L~Ls~n~i~~~~~  134 (310)
T 4glp_A           64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLE---A----TGLALSSLRLRNVSWATGRS  134 (310)
T ss_dssp             CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSS---C----CCBCCSSCEEESCCCSSTTS
T ss_pred             cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCC-Eeccchhhhhhh---c----cCCCCCEEEeecccccchhh
Confidence            35788888887 4332211111  124578999999999 776555443200   1    68899999999887332222


Q ss_pred             cC-cccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694          111 NF-TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK  189 (384)
Q Consensus       111 ~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~  189 (384)
                      .. ......+++|++|++++|. ++..+.                                ..++.+++|++|+++++.-
T Consensus       135 ~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~--------------------------------~~~~~l~~L~~L~Ls~N~l  181 (310)
T 4glp_A          135 WLAELQQWLKPGLKVLSIAQAH-SPAFSC--------------------------------EQVRAFPALTSLDLSDNPG  181 (310)
T ss_dssp             SHHHHHTTBCSCCCEEEEECCS-SCCCCT--------------------------------TSCCCCTTCCEEECCSCTT
T ss_pred             hhHHHHhhhccCCCEEEeeCCC-cchhhH--------------------------------HHhccCCCCCEEECCCCCC
Confidence            10 0123468899999999874 232210                                1123689999999999843


Q ss_pred             ccc--ccccccccccccccccEEeeccCcccccccCC----cccCCCcCEEEeecCCCCeeeccccc--ccccCcccEEe
Q 016694          190 VQH--LWKENDESNKAFANLIRLKISECSKLQKLVTP----SWHLENLATLEVSKCHGLINVLTLST--SESLVNLGRMK  261 (384)
Q Consensus       190 l~~--l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~----~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~l~~L~~L~  261 (384)
                      ...  +....  ....+++|++|++++| .++.++..    +..+++|++|+++++. ++...+...  ...+++|++|+
T Consensus       182 ~~~~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~  257 (310)
T 4glp_A          182 LGERGLMAAL--CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLN  257 (310)
T ss_dssp             CHHHHHHTTS--CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEE
T ss_pred             ccchhhhHHH--hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEE
Confidence            221  11110  1246889999999997 45555432    3577999999999975 555422222  12347999999


Q ss_pred             ecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 016694          262 IADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP  324 (384)
Q Consensus       262 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~  324 (384)
                      ++++ .++.++..          .+++|++|+++++ +++.++.   ...+++|++|++++++
T Consensus       258 Ls~N-~l~~lp~~----------~~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          258 LSFA-GLEQVPKG----------LPAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCSS-CCCSCCSC----------CCSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTT
T ss_pred             CCCC-CCCchhhh----------hcCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCCC
Confidence            9985 46655432          1489999999885 6776644   5678999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.40  E-value=5.3e-12  Score=111.70  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=52.8

Q ss_pred             CceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccc
Q 016694            7 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE   86 (384)
Q Consensus         7 L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   86 (384)
                      .++++++++ .+..+    |..+.  +++++|++++| ++..+++.. ++++++|++|++++| .+..+++....     
T Consensus        16 ~~~l~~~~~-~l~~~----p~~~~--~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~-----   80 (251)
T 3m19_A           16 KKEVDCQGK-SLDSV----PSGIP--ADTEKLDLQST-GLATLSDAT-FRGLTKLTWLNLDYN-QLQTLSAGVFD-----   80 (251)
T ss_dssp             GTEEECTTC-CCSSC----CSCCC--TTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCTTTTT-----
T ss_pred             CeEEecCCC-Ccccc----CCCCC--CCCCEEEccCC-CcCccCHhH-hcCcccCCEEECCCC-cCCccCHhHhc-----
Confidence            455666655 44444    44332  46666666666 455554332 346666666666666 55555443321     


Q ss_pred             ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                          .+++|++|+++++. ++.++.  .....+++|++|+++++
T Consensus        81 ----~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           81 ----DLTELGTLGLANNQ-LASLPL--GVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             ----TCTTCCEEECTTSC-CCCCCT--TTTTTCTTCCEEECCSS
T ss_pred             ----cCCcCCEEECCCCc-ccccCh--hHhcccCCCCEEEcCCC
Confidence                45566666666554 443332  12234455555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.38  E-value=2.2e-12  Score=128.33  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=17.8

Q ss_pred             CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCccee
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV   75 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   75 (384)
                      .+.+|+.|++++| .+..++.   ++.+++|++|++++| .+..+
T Consensus        41 ~L~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~Ls~N-~l~~~   80 (605)
T 1m9s_A           41 ELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI   80 (605)
T ss_dssp             HHTTCCCCBCTTC-CCCCCTT---GGGCTTCCEEECTTS-CCCCC
T ss_pred             cCCCCCEEECcCC-CCCCChH---HccCCCCCEEEeeCC-CCCCC
Confidence            3444555555444 3333321   234455555555554 44443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.38  E-value=5.1e-12  Score=114.44  Aligned_cols=166  Identities=18%  Similarity=0.299  Sum_probs=90.3

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +++|++|+++++ .+..+    + .+..+++|++|++++| ++++.++   +.++++|++|++++| .+..++...    
T Consensus        45 l~~L~~L~l~~~-~i~~~----~-~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~l~----  109 (291)
T 1h6t_A           45 LNSIDQIIANNS-DIKSV----Q-GIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDLSSLK----  109 (291)
T ss_dssp             HHTCCEEECTTS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCGGGGT----
T ss_pred             cCcccEEEccCC-CcccC----h-hHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC-cCCCChhhc----
Confidence            355666666666 44443    2 2456666666666666 5555543   356666666666666 555543211    


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                             .+++|++|+++++. ++.++    ....+++|+.|++++|. ++.+                           
T Consensus       110 -------~l~~L~~L~L~~n~-i~~~~----~l~~l~~L~~L~l~~n~-l~~~---------------------------  149 (291)
T 1h6t_A          110 -------DLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNNK-ITDI---------------------------  149 (291)
T ss_dssp             -------TCTTCCEEECTTSC-CCCCG----GGGGCTTCCEEECCSSC-CCCC---------------------------
T ss_pred             -------cCCCCCEEECCCCc-CCCCh----hhcCCCCCCEEEccCCc-CCcc---------------------------
Confidence                   55666666666664 44432    23455666666666542 2211                           


Q ss_pred             CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecC
Q 016694          164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC  239 (384)
Q Consensus       164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c  239 (384)
                             ...+.+++|+.|+++++ .+..+..     ...+++|+.|+++++ .++.++ .+..+++|+.|+++++
T Consensus       150 -------~~l~~l~~L~~L~L~~N-~l~~~~~-----l~~l~~L~~L~L~~N-~i~~l~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          150 -------TVLSRLTKLDTLSLEDN-QISDIVP-----LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             -------GGGGGCTTCSEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEEE
T ss_pred             -------hhhccCCCCCEEEccCC-ccccchh-----hcCCCccCEEECCCC-cCCCCh-hhccCCCCCEEECcCC
Confidence                   01124666666666665 3333211     245666666666665 345553 3556666666666665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.37  E-value=4.4e-14  Score=133.33  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=52.0

Q ss_pred             CCCCCCCCCccEEEeecCCCCcccCchhH---HhcCCCCCEEEEecccCcceeccc---cc--ccccccccCCcccccce
Q 016694           26 ALPVSFFNNLRHLVVDDCTNMLSAIPANL---IRCLNNLRWLEVRNCDSLEEVLHL---EE--LNADKEHIGPLFPKLFE   97 (384)
Q Consensus        26 p~~i~~l~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~---~~--~~~~~~~~~~~~~~L~~   97 (384)
                      +..+..+++|++|++++| .++...+..+   +.++++|++|++++| .+..+.+.   ..  ....+.    .+++|++
T Consensus        25 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~----~~~~L~~   98 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALL----KCPKLHT   98 (386)
T ss_dssp             SHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHT----TCTTCCE
T ss_pred             HHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHh----hCCcccE
Confidence            334456677777777776 4554333221   336777777777776 33322111   00  000011    4567777


Q ss_pred             eccCccccccc-----cccCcccccCCCCceeEeeccCC
Q 016694           98 LTLMDLPKLKR-----FCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        98 L~l~~~~~l~~-----~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                      |+++++. ++.     ++.   .+..+++|++|++++|.
T Consensus        99 L~Ls~n~-l~~~~~~~l~~---~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           99 VRLSDNA-FGPTAQEPLID---FLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             EECCSCC-CCTTTHHHHHH---HHHHCTTCCEEECCSSC
T ss_pred             EECCCCc-CCHHHHHHHHH---HHHhCCCCCEEECcCCC
Confidence            7777765 322     322   34567777888877764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.35  E-value=6.8e-12  Score=106.76  Aligned_cols=151  Identities=15%  Similarity=0.175  Sum_probs=102.6

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc-
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR-  108 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-  108 (384)
                      ..+++|++|++++| .+++++.   +..+++|++|++++| .+..++...           .+++|++|+++++. ++. 
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~l~~n-~~~~~~~l~-----------~l~~L~~L~l~~n~-l~~~  103 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLTG---IEYAHNIKDLTINNI-HATNYNPIS-----------GLSNLERLRIMGKD-VTSD  103 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCTT---GGGCTTCSEEEEESC-CCSCCGGGT-----------TCTTCCEEEEECTT-CBGG
T ss_pred             hhcCCccEEeccCC-CccChHH---HhcCCCCCEEEccCC-CCCcchhhh-----------cCCCCCEEEeECCc-cCcc
Confidence            46778888888887 6666542   468888888888888 666553222           67888888888876 433 


Q ss_pred             cccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694          109 FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH  188 (384)
Q Consensus       109 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~  188 (384)
                      .+.   ....+++|++|++++|. ++..                                .+..++.+++|+.|+++++.
T Consensus       104 ~~~---~l~~l~~L~~L~Ls~n~-i~~~--------------------------------~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          104 KIP---NLSGLTSLTLLDISHSA-HDDS--------------------------------ILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             GSC---CCTTCTTCCEEECCSSB-CBGG--------------------------------GHHHHTTCSSCCEEECCSCT
T ss_pred             cCh---hhcCCCCCCEEEecCCc-cCcH--------------------------------hHHHHhhCCCCCEEEccCCC
Confidence            333   45678888888888863 2211                                00111257788888888875


Q ss_pred             ccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694          189 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       189 ~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  240 (384)
                      .+..++     ....+++|++|++++| .++.++ .+..+++|+.|++++++
T Consensus       148 ~i~~~~-----~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          148 AITDIM-----PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             BCCCCG-----GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             CccccH-----hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence            455542     2467888888888886 456664 67788889999888764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.33  E-value=1.8e-13  Score=129.18  Aligned_cols=249  Identities=14%  Similarity=0.064  Sum_probs=142.2

Q ss_pred             CCCCCceEecCCCcCccee-cccCCCCCCCCCCccEEEeecC--CCCcccCchhH------HhcCCCCCEEEEecccCcc
Q 016694            3 GFRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDC--TNMLSAIPANL------IRCLNNLRWLEVRNCDSLE   73 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i-~~~~p~~i~~l~~L~~L~l~~c--~~l~~~~~~~~------~~~l~~L~~L~l~~~~~l~   73 (384)
                      .+++|++|+++++ .+... ....+..+..+++|++|++++|  .++++..|..+      +..+++|++|++++| .+.
T Consensus        30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~  107 (386)
T 2ca6_A           30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG  107 (386)
T ss_dssp             HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred             cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence            4688999999999 45431 1001234678999999999998  34444434433      358899999999999 665


Q ss_pred             eecccccccccccccCCcccccceeccCcccccccccc--CcccccCC---------CCceeEeeccCCCcccccCCCee
Q 016694           74 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN--FTENIIEM---------PELRYLAIENCPDMETFISNSVV  142 (384)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~---------~~L~~L~l~~c~~l~~~~~~~L~  142 (384)
                      ...... ....+.    .+++|++|++++|. ++....  +......+         ++|++|++++|. ++..      
T Consensus       108 ~~~~~~-l~~~l~----~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~------  174 (386)
T 2ca6_A          108 PTAQEP-LIDFLS----KHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENG------  174 (386)
T ss_dssp             TTTHHH-HHHHHH----HCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGG------
T ss_pred             HHHHHH-HHHHHH----hCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcH------
Confidence            410000 000112    67899999999987 332211  00122233         899999999874 3211      


Q ss_pred             EEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccc-cc-cccccccccEEeeccCccc--
Q 016694          143 HVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN-DE-SNKAFANLIRLKISECSKL--  218 (384)
Q Consensus       143 ~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~-~~~~~~~L~~L~l~~~~~l--  218 (384)
                                            ++..+...++.+++|++|+++++ .+....... .+ ....+++|+.|++++|..-  
T Consensus       175 ----------------------~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~  231 (386)
T 2ca6_A          175 ----------------------SMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL  231 (386)
T ss_dssp             ----------------------GHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred             ----------------------HHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence                                  11111111125667777777776 333110000 01 1356677888888776531  


Q ss_pred             --ccccCCcccCCCcCEEEeecCCCCeeecc---cccc--cccCcccEEeecccccccE-----ecccccCccccceeee
Q 016694          219 --QKLVTPSWHLENLATLEVSKCHGLINVLT---LSTS--ESLVNLGRMKIADCKMIEQ-----IIQLQVGEEAKGCVVF  286 (384)
Q Consensus       219 --~~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~--~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~~~~~  286 (384)
                        ..+|..+..+++|++|++++|. ++....   +..+  ..+++|+.|++++|. +..     ++..       ....+
T Consensus       232 g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~-------l~~~l  302 (386)
T 2ca6_A          232 GSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTV-------IDEKM  302 (386)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHH-------HHHHC
T ss_pred             HHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHH-------HHhcC
Confidence              4455566677788888888775 443211   1122  236778888887754 332     2111       00125


Q ss_pred             cccceeecccCC
Q 016694          287 EELGYLGLDCLP  298 (384)
Q Consensus       287 ~~L~~L~l~~c~  298 (384)
                      ++|++|++++++
T Consensus       303 ~~L~~L~l~~N~  314 (386)
T 2ca6_A          303 PDLLFLELNGNR  314 (386)
T ss_dssp             TTCCEEECTTSB
T ss_pred             CCceEEEccCCc
Confidence            788888887753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.32  E-value=1.1e-11  Score=123.27  Aligned_cols=168  Identities=18%  Similarity=0.301  Sum_probs=116.9

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|+.|+++++ .+..+    + .+..+++|+.|+|++| .+.++++   +..+++|++|++++| .+..++...   
T Consensus        41 ~L~~L~~L~l~~n-~i~~l----~-~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~l~---  106 (605)
T 1m9s_A           41 ELNSIDQIIANNS-DIKSV----Q-GIQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKDLSSLK---  106 (605)
T ss_dssp             HHTTCCCCBCTTC-CCCCC----T-TGGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCTTST---
T ss_pred             cCCCCCEEECcCC-CCCCC----h-HHccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCCChhhc---
Confidence            3578888898888 56654    3 4778899999999988 6777755   468899999999998 777654222   


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccc
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL  162 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~  162 (384)
                              .+++|++|+++++. +..++    .+..+++|+.|++++|. ++.+                          
T Consensus       107 --------~l~~L~~L~Ls~N~-l~~l~----~l~~l~~L~~L~Ls~N~-l~~l--------------------------  146 (605)
T 1m9s_A          107 --------DLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNNK-ITDI--------------------------  146 (605)
T ss_dssp             --------TCTTCCEEECTTSC-CCCCG----GGGGCTTCSEEECCSSC-CCCC--------------------------
T ss_pred             --------cCCCCCEEEecCCC-CCCCc----cccCCCccCEEECCCCc-cCCc--------------------------
Confidence                    67888899888876 55443    35567788888887762 2211                          


Q ss_pred             cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694          163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  240 (384)
                              ..++.+++|+.|+|+++ .+..+..     ...+++|+.|++++| .+..+ +.+..+++|+.|++++|+
T Consensus       147 --------~~l~~l~~L~~L~Ls~N-~l~~~~~-----l~~l~~L~~L~Ls~N-~i~~l-~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          147 --------TVLSRLTKLDTLSLEDN-QISDIVP-----LAGLTKLQNLYLSKN-HISDL-RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             --------GGGGSCTTCSEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCBC-GGGTTCTTCSEEECCSEE
T ss_pred             --------hhhcccCCCCEEECcCC-cCCCchh-----hccCCCCCEEECcCC-CCCCC-hHHccCCCCCEEEccCCc
Confidence                    11226778888888877 4443311     356778888888876 45555 346777888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.31  E-value=2.4e-11  Score=107.48  Aligned_cols=107  Identities=18%  Similarity=0.108  Sum_probs=81.9

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++++.|+++++ .+..+   .+..+..+++|++|++++| .++..++. .+.++++|++|++++| .+..+++....   
T Consensus        35 ~~l~~L~L~~n-~l~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~---  104 (251)
T 3m19_A           35 ADTEKLDLQST-GLATL---SDATFRGLTKLTWLNLDYN-QLQTLSAG-VFDDLTELGTLGLANN-QLASLPLGVFD---  104 (251)
T ss_dssp             TTCCEEECTTS-CCCCC---CTTTTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCTTTTT---
T ss_pred             CCCCEEEccCC-CcCcc---CHhHhcCcccCCEEECCCC-cCCccCHh-HhccCCcCCEEECCCC-cccccChhHhc---
Confidence            57999999999 56554   1446788999999999998 77777554 3578999999999999 88877765532   


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                            .+++|++|+++++. ++.++.  .....+++|++|+++++
T Consensus       105 ------~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A          105 ------HLTQLDKLYLGGNQ-LKSLPS--GVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             ------TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSS
T ss_pred             ------ccCCCCEEEcCCCc-CCCcCh--hHhccCCcccEEECcCC
Confidence                  78899999999886 666654  12345677777777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.29  E-value=1.2e-12  Score=122.49  Aligned_cols=95  Identities=13%  Similarity=0.012  Sum_probs=47.0

Q ss_pred             CCCCCccEEEeecCCCCcccCch---hHHhcCC-CCCEEEEecccCcceecccccccccccccCCcccccceeccCcccc
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPA---NLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPK  105 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  105 (384)
                      ...++|++|++++| .+++.++.   ..+.+++ +|++|++++| .+.......... .+.   ..+++|++|+++++. 
T Consensus        19 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~-~l~---~~~~~L~~L~Ls~n~-   91 (362)
T 3goz_A           19 SIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQ-ILA---AIPANVTSLNLSGNF-   91 (362)
T ss_dssp             TSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHH-HHH---TSCTTCCEEECCSSC-
T ss_pred             hCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHH-HHh---ccCCCccEEECcCCc-
Confidence            33455777777776 45655442   2234556 6777777777 555443222110 000   012667777777665 


Q ss_pred             cccccc--CcccccCC-CCceeEeeccCC
Q 016694          106 LKRFCN--FTENIIEM-PELRYLAIENCP  131 (384)
Q Consensus       106 l~~~~~--~~~~~~~~-~~L~~L~l~~c~  131 (384)
                      ++....  +......+ ++|++|++++|.
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence            332221  00012223 567777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.28  E-value=6.2e-11  Score=116.73  Aligned_cols=175  Identities=15%  Similarity=0.119  Sum_probs=89.7

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      +|++|+++++ .+..+    |..+  +++|++|++++| +++.++     +.+++|++|++++| .+..++. .      
T Consensus        60 ~L~~L~Ls~n-~L~~l----p~~l--~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~-l------  118 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSL----PDNL--PPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLPE-L------  118 (571)
T ss_dssp             TCSEEECCSS-CCSCC----CSCC--CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-C------
T ss_pred             CccEEEeCCC-CCCcc----CHhH--cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcch-h------
Confidence            5566666665 34443    4433  356666666665 445443     23466666666666 5555433 1      


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCC
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ  165 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~  165 (384)
                           . .+|++|+++++. ++.+|.      .+++|+.|+++++ .++.+|                            
T Consensus       119 -----~-~~L~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N-~l~~lp----------------------------  156 (571)
T 3cvr_A          119 -----P-ASLKHLDVDNNQ-LTMLPE------LPALLEYINADNN-QLTMLP----------------------------  156 (571)
T ss_dssp             -----C-TTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSCCC----------------------------
T ss_pred             -----h-cCCCEEECCCCc-CCCCCC------cCccccEEeCCCC-ccCcCC----------------------------
Confidence                 0 156666666554 433332      3455555555553 222111                            


Q ss_pred             cccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCc-------CEEEeec
Q 016694          166 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENL-------ATLEVSK  238 (384)
Q Consensus       166 l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L-------~~L~l~~  238 (384)
                           .   .+++|+.|+++++ .+..++.  +   .  ++|+.|+++++ .++.+|. +..  +|       +.|++++
T Consensus       157 -----~---~l~~L~~L~Ls~N-~L~~lp~--l---~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          157 -----E---LPTSLEVLSVRNN-QLTFLPE--L---P--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             -----C---CCTTCCEEECCSS-CCSCCCC--C---C--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS
T ss_pred             -----C---cCCCcCEEECCCC-CCCCcch--h---h--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC
Confidence                 1   2456666776665 3443322  1   1  56777777664 4555655 332  45       6677766


Q ss_pred             CCCCeeecccccccccCcccEEeecccc
Q 016694          239 CHGLINVLTLSTSESLVNLGRMKIADCK  266 (384)
Q Consensus       239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~  266 (384)
                      + .++.+  +..+..+++|+.|++++++
T Consensus       217 N-~l~~l--p~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          217 N-RITHI--PENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             S-CCCCC--CGGGGGSCTTEEEECCSSS
T ss_pred             C-cceec--CHHHhcCCCCCEEEeeCCc
Confidence            5 35544  3333446677777776643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.28  E-value=3.1e-11  Score=102.62  Aligned_cols=152  Identities=13%  Similarity=0.187  Sum_probs=112.7

Q ss_pred             hcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccc
Q 016694           56 RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET  135 (384)
Q Consensus        56 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  135 (384)
                      +.+++|++|++++| .+..+++..           .+++|++|+++++ .++.++    .+..+++|++|+++++. ++.
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~~l~-----------~l~~L~~L~l~~n-~~~~~~----~l~~l~~L~~L~l~~n~-l~~  102 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLTGIE-----------YAHNIKDLTINNI-HATNYN----PISGLSNLERLRIMGKD-VTS  102 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCTTGG-----------GCTTCSEEEEESC-CCSCCG----GGTTCTTCCEEEEECTT-CBG
T ss_pred             hhcCCccEEeccCC-CccChHHHh-----------cCCCCCEEEccCC-CCCcch----hhhcCCCCCEEEeECCc-cCc
Confidence            57799999999999 888776322           7889999999998 355554    35678999999999863 332


Q ss_pred             ccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccC
Q 016694          136 FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC  215 (384)
Q Consensus       136 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~  215 (384)
                      .                                .+..++.+++|+.|+++++ .+.....   .....+++|++|++++|
T Consensus       103 ~--------------------------------~~~~l~~l~~L~~L~Ls~n-~i~~~~~---~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A          103 D--------------------------------KIPNLSGLTSLTLLDISHS-AHDDSIL---TKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             G--------------------------------GSCCCTTCTTCCEEECCSS-BCBGGGH---HHHTTCSSCCEEECCSC
T ss_pred             c--------------------------------cChhhcCCCCCCEEEecCC-ccCcHhH---HHHhhCCCCCEEEccCC
Confidence            1                                0111236899999999987 3443111   11367899999999998


Q ss_pred             cccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccc
Q 016694          216 SKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK  266 (384)
Q Consensus       216 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~  266 (384)
                      ..++.++ .+..+++|+.|++++|. ++++.   .+..+++|+.|+++++.
T Consensus       147 ~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          147 GAITDIM-PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             TBCCCCG-GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred             CCccccH-hhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence            7688885 67889999999999975 66652   45788999999999843

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.25  E-value=1.1e-11  Score=110.40  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=29.7

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccc
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  104 (384)
                      ..+++|++|++++| +++.++.   ++.+++|++|++++| .+.++++ .      .    .+++|++|+++++.
T Consensus        38 ~~l~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~L~~N-~i~~~~~-l------~----~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           38 KELSGVQNFNGDNS-NIQSLAG---MQFFTNLKELHLSHN-QISDLSP-L------K----DLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHTTCSEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-G------T----TCSSCCEEECCSSC
T ss_pred             hhcCcCcEEECcCC-CcccchH---HhhCCCCCEEECCCC-ccCCChh-h------c----cCCCCCEEECCCCc
Confidence            44555555555555 4444431   345555555555555 4544433 1      1    45555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.23  E-value=4e-11  Score=102.79  Aligned_cols=150  Identities=13%  Similarity=0.059  Sum_probs=88.9

Q ss_pred             CCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccccc
Q 016694           32 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN  111 (384)
Q Consensus        32 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  111 (384)
                      .++|++|++++| +++.+++. .++.+++|++|++++| .++.+++....         .+++|++|+++++. ++.++.
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n~-l~~~~~   93 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNG-VFDELTSLTQLYLGGN-KLQSLPNGVFN---------KLTSLTYLNLSTNQ-LQSLPN   93 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CCCCCT
T ss_pred             CCCCcEEEcCCC-ccCcCChh-hhcccccCcEEECCCC-ccCccChhhcC---------CCCCcCEEECCCCc-CCccCH
Confidence            467888888887 66665443 3467788888888887 67766554322         56788888888775 555554


Q ss_pred             CcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccc
Q 016694          112 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ  191 (384)
Q Consensus       112 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~  191 (384)
                        .....+++|++|+++++ .++.++..                                .++.+++|+.|+++++ .+.
T Consensus        94 --~~~~~l~~L~~L~L~~N-~l~~~~~~--------------------------------~~~~l~~L~~L~l~~N-~l~  137 (208)
T 2o6s_A           94 --GVFDKLTQLKELALNTN-QLQSLPDG--------------------------------VFDKLTQLKDLRLYQN-QLK  137 (208)
T ss_dssp             --TTTTTCTTCCEEECCSS-CCCCCCTT--------------------------------TTTTCTTCCEEECCSS-CCS
T ss_pred             --hHhcCccCCCEEEcCCC-cCcccCHh--------------------------------HhccCCcCCEEECCCC-ccc
Confidence              13456778888888775 33322100                                0125666777777665 343


Q ss_pred             cccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694          192 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       192 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  240 (384)
                      .+....   ...+++|+.|++++++.       ...+++|+.|+++.+.
T Consensus       138 ~~~~~~---~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          138 SVPDGV---FDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINK  176 (208)
T ss_dssp             CCCTTT---TTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHHHH
T ss_pred             eeCHHH---hccCCCccEEEecCCCe-------ecCCCCHHHHHHHHHh
Confidence            332211   24566777777776531       1334556666655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.22  E-value=2.3e-12  Score=120.47  Aligned_cols=263  Identities=12%  Similarity=0.030  Sum_probs=140.8

Q ss_pred             EEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCccc-ccceeccCccccccccccCcccc
Q 016694           38 LVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFP-KLFELTLMDLPKLKRFCNFTENI  116 (384)
Q Consensus        38 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~  116 (384)
                      ++++.+ ++.+..+ .+....++|++|++++| .+...+.... ...+.    .++ +|++|+++++. ++....  ...
T Consensus         3 ~~ls~n-~~~~~~~-~~~~~~~~L~~L~Ls~n-~l~~~~~~~l-~~~l~----~~~~~L~~L~Ls~N~-l~~~~~--~~l   71 (362)
T 3goz_A            3 YKLTLH-PGSNPVE-EFTSIPHGVTSLDLSLN-NLYSISTVEL-IQAFA----NTPASVTSLNLSGNS-LGFKNS--DEL   71 (362)
T ss_dssp             EECCCC-TTCCHHH-HHHTSCTTCCEEECTTS-CGGGSCHHHH-HHHHH----TCCTTCCEEECCSSC-GGGSCH--HHH
T ss_pred             cccccc-cchHHHH-HHHhCCCCceEEEccCC-CCChHHHHHH-HHHHH----hCCCceeEEECcCCC-CCHHHH--HHH
Confidence            456665 5555433 33445566999999999 7776653110 01112    566 89999999986 444321  012


Q ss_pred             cC-----CCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCcccc-CCccEEeccccccc
Q 016694          117 IE-----MPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAF-PQLRYLELSRLHKV  190 (384)
Q Consensus       117 ~~-----~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~L~~L~l~~~~~l  190 (384)
                      ..     +++|++|++++|. ++..+                            ...+......+ ++|++|+++++ .+
T Consensus        72 ~~~l~~~~~~L~~L~Ls~n~-l~~~~----------------------------~~~l~~~l~~~~~~L~~L~Ls~N-~l  121 (362)
T 3goz_A           72 VQILAAIPANVTSLNLSGNF-LSYKS----------------------------SDELVKTLAAIPFTITVLDLGWN-DF  121 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSC-GGGSC----------------------------HHHHHHHHHTSCTTCCEEECCSS-CG
T ss_pred             HHHHhccCCCccEEECcCCc-CChHH----------------------------HHHHHHHHHhCCCCccEEECcCC-cC
Confidence            22     2889999998874 33221                            00000001123 67778887776 34


Q ss_pred             cccccccccc-ccc-cccccEEeeccCcccc-----cccCCcccCC-CcCEEEeecCCCCeeecccc---ccccc-Cccc
Q 016694          191 QHLWKENDES-NKA-FANLIRLKISECSKLQ-----KLVTPSWHLE-NLATLEVSKCHGLINVLTLS---TSESL-VNLG  258 (384)
Q Consensus       191 ~~l~~~~~~~-~~~-~~~L~~L~l~~~~~l~-----~l~~~~~~~~-~L~~L~l~~c~~l~~l~~~~---~~~~l-~~L~  258 (384)
                      .......+.. ... +++|++|++++|. ++     .++..+..++ +|++|++++|. +++.....   .+..+ ++|+
T Consensus       122 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~  199 (362)
T 3goz_A          122 SSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVT  199 (362)
T ss_dssp             GGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCC
T ss_pred             CcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCC
Confidence            4332211100 012 3578888887764 33     2223334444 78888888764 44432111   12334 4788


Q ss_pred             EEeecccccccEecccccCccccceee-ecccceeecccCCCCceecCC---CcccCCCCccEEEeccCC-------CCC
Q 016694          259 RMKIADCKMIEQIIQLQVGEEAKGCVV-FEELGYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCP-------TMK  327 (384)
Q Consensus       259 ~L~l~~c~~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~c~~L~~l~~~---~~~~~~~~L~~L~l~~c~-------~l~  327 (384)
                      +|++++|. +......   ........ .++|++|+++++ .+++....   .....+++|++|++++|.       .+.
T Consensus       200 ~L~Ls~N~-i~~~~~~---~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~  274 (362)
T 3goz_A          200 SLDLSANL-LGLKSYA---ELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK  274 (362)
T ss_dssp             EEECTTSC-GGGSCHH---HHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred             EEECCCCC-CChhHHH---HHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence            88888754 4321000   00001111 357888888775 44443221   113456888888888875       123


Q ss_pred             ccCCCCcCCCCCeeeccCCCC
Q 016694          328 IFSQGVVDAPKLNKVKPTEEE  348 (384)
Q Consensus       328 ~lp~~~~~~~~L~~l~i~~~~  348 (384)
                      .++..+..+++|+.+++++++
T Consensus       275 ~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          275 ALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHhccCCceEEEecCCCc
Confidence            344555567788888888873

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.22  E-value=6.5e-11  Score=105.48  Aligned_cols=100  Identities=22%  Similarity=0.310  Sum_probs=78.0

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|++|+++++ .+..+    + .+..+++|++|++++| +++++++   ++++++|++|++++| .++++++..   
T Consensus        39 ~l~~L~~L~l~~n-~i~~l----~-~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l~~~~---  104 (263)
T 1xeu_A           39 ELSGVQNFNGDNS-NIQSL----A-GMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNLNGIP---  104 (263)
T ss_dssp             HHTTCSEEECTTS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCCTTCC---
T ss_pred             hcCcCcEEECcCC-Ccccc----h-HHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCcCccc---
Confidence            4689999999999 67765    4 5788999999999998 7888765   579999999999999 787765422   


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                              . ++|++|+++++. ++.++    ....+++|+.|+++++
T Consensus       105 --------~-~~L~~L~L~~N~-l~~~~----~l~~l~~L~~L~Ls~N  138 (263)
T 1xeu_A          105 --------S-ACLSRLFLDNNE-LRDTD----SLIHLKNLEILSIRNN  138 (263)
T ss_dssp             --------C-SSCCEEECCSSC-CSBSG----GGTTCTTCCEEECTTS
T ss_pred             --------c-CcccEEEccCCc-cCCCh----hhcCcccccEEECCCC
Confidence                    3 788999998875 55543    2456777777777765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.19  E-value=4.3e-10  Score=110.74  Aligned_cols=31  Identities=3%  Similarity=0.064  Sum_probs=18.5

Q ss_pred             cEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          316 EHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       316 ~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      ++|++++| .++.+|..+..+++|+.+++++|
T Consensus       210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          210 IFFRCREN-RITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             EEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred             eEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence            66666555 45556655555666666666665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.16  E-value=1e-10  Score=96.61  Aligned_cols=60  Identities=20%  Similarity=0.229  Sum_probs=29.3

Q ss_pred             CCCceEecCCCcCcc--eecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcce
Q 016694            5 RDIKYLQLGHFPRLQ--EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE   74 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~--~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~   74 (384)
                      ++|++|+++++ .+.  .+    |..+..+++|++|++++| .++..   ..++.+++|++|++++| .+..
T Consensus        24 ~~L~~L~l~~n-~l~~~~i----~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~   85 (168)
T 2ell_A           24 AAVRELVLDNC-KSNDGKI----EGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFG   85 (168)
T ss_dssp             TSCSEEECCSC-BCBTTBC----SSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCS
T ss_pred             ccCCEEECCCC-CCChhhH----HHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCch
Confidence            44555555555 233  33    444445555555555555 34443   11345555555555555 4443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.15  E-value=4.7e-10  Score=97.07  Aligned_cols=61  Identities=13%  Similarity=0.156  Sum_probs=33.2

Q ss_pred             ccCCccEEecccccccccccccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeecCC
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~  240 (384)
                      .+++|++|+++++ .+..+....   ...+++|+.|+++++ .++.+ |..+..+++|+.|++++++
T Consensus       103 ~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          103 GLESLKTLMLRSN-RITCVGNDS---FIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TCSSCCEEECTTS-CCCCBCTTS---STTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcCCCEEECCCC-cCCeECHhH---cCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence            4555555555554 333321111   244566666666664 34444 4456667777777777754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.14  E-value=2.5e-10  Score=97.83  Aligned_cols=166  Identities=14%  Similarity=0.068  Sum_probs=104.0

Q ss_pred             cEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCccc
Q 016694           36 RHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN  115 (384)
Q Consensus        36 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  115 (384)
                      +.++.+++ .++.++..    -.++|++|++++| .+..+++....         .+++|++|+++++. ++.++.  ..
T Consensus        10 ~~v~c~~~-~l~~~p~~----~~~~l~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~--~~   71 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPTG----IPAQTTYLDLETN-SLKSLPNGVFD---------ELTSLTQLYLGGNK-LQSLPN--GV   71 (208)
T ss_dssp             TEEECCSS-CCSSCCSC----CCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCSEEECCSSC-CCCCCT--TT
T ss_pred             CEEEecCC-CccCCCCC----CCCCCcEEEcCCC-ccCcCChhhhc---------ccccCcEEECCCCc-cCccCh--hh
Confidence            45555554 45555322    3467888888888 77766554422         67788888888775 555554  13


Q ss_pred             ccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccc
Q 016694          116 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK  195 (384)
Q Consensus       116 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~  195 (384)
                      ...+++|++|+++++ .++.++.                             .   .++.+++|+.|+++++ .+..+..
T Consensus        72 ~~~l~~L~~L~Ls~n-~l~~~~~-----------------------------~---~~~~l~~L~~L~L~~N-~l~~~~~  117 (208)
T 2o6s_A           72 FNKLTSLTYLNLSTN-QLQSLPN-----------------------------G---VFDKLTQLKELALNTN-QLQSLPD  117 (208)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCT-----------------------------T---TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             cCCCCCcCEEECCCC-cCCccCH-----------------------------h---HhcCccCCCEEEcCCC-cCcccCH
Confidence            356788888888875 2332210                             0   1126778888888876 4544332


Q ss_pred             cccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccc
Q 016694          196 ENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK  266 (384)
Q Consensus       196 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~  266 (384)
                      ..   ...+++|++|+++++ .++.++.. +..+++|++|++++++         +...+++|+.|+++.+.
T Consensus       118 ~~---~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~---------~~~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          118 GV---FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP---------WDCTCPGIRYLSEWINK  176 (208)
T ss_dssp             TT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC---------BCCCTTTTHHHHHHHHH
T ss_pred             hH---hccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC---------eecCCCCHHHHHHHHHh
Confidence            21   256788888888886 45566554 5678888888888764         12345677777777643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.14  E-value=5.6e-10  Score=97.20  Aligned_cols=149  Identities=13%  Similarity=0.021  Sum_probs=83.7

Q ss_pred             ccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcc
Q 016694           35 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE  114 (384)
Q Consensus        35 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  114 (384)
                      -+.++++++ +++.+|..    -.++|++|++++| .+..+++....         .+++|++|+++++. ++.++.  .
T Consensus        21 ~~~v~c~~~-~l~~ip~~----~~~~L~~L~Ls~n-~i~~~~~~~~~---------~l~~L~~L~L~~N~-l~~i~~--~   82 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAG----IPTNAQILYLHDN-QITKLEPGVFD---------SLINLKELYLGSNQ-LGALPV--G   82 (229)
T ss_dssp             TTEEECTTS-CCSSCCSC----CCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CCCCCT--T
T ss_pred             CCEeEccCC-CcCccCCC----CCCCCCEEEcCCC-ccCccCHHHhh---------CccCCcEEECCCCC-CCCcCh--h
Confidence            345555544 44555331    2266666666666 55555443322         45666666666665 444443  1


Q ss_pred             cccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccccccc
Q 016694          115 NIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW  194 (384)
Q Consensus       115 ~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~  194 (384)
                      ....+++|+.|+++++ .++.++.                             .   .++.+++|+.|+++++ .+..++
T Consensus        83 ~~~~l~~L~~L~Ls~N-~l~~l~~-----------------------------~---~~~~l~~L~~L~Ls~N-~l~~lp  128 (229)
T 3e6j_A           83 VFDSLTQLTVLDLGTN-QLTVLPS-----------------------------A---VFDRLVHLKELFMCCN-KLTELP  128 (229)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCT-----------------------------T---TTTTCTTCCEEECCSS-CCCSCC
T ss_pred             hcccCCCcCEEECCCC-cCCccCh-----------------------------h---HhCcchhhCeEeccCC-cccccC
Confidence            2345666777776664 2332210                             0   0125667777777766 454443


Q ss_pred             ccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCC
Q 016694          195 KENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCH  240 (384)
Q Consensus       195 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  240 (384)
                      ..    ...+++|+.|+++++ .++.++. .+..+++|+.|++.+++
T Consensus       129 ~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          129 RG----IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TT----GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cc----cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence            22    356777888888775 4666654 35677888888888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.11  E-value=3e-10  Score=105.98  Aligned_cols=84  Identities=18%  Similarity=0.060  Sum_probs=40.6

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      .+++.|++++| +++.+++..+..++++|++|++++| .+..+++....         .+++|++|+++++. ++.++. 
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~-  105 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFV---------PVPNLRYLDLSSNH-LHTLDE-  105 (361)
T ss_dssp             TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTT---------TCTTCCEEECCSSC-CCEECT-
T ss_pred             CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhcc---------CCCCCCEEECCCCc-CCcCCH-
Confidence            34555666555 4555433321115555666666555 55555443321         45555555555554 444432 


Q ss_pred             cccccCCCCceeEeeccC
Q 016694          113 TENIIEMPELRYLAIENC  130 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c  130 (384)
                       .....+++|+.|+++++
T Consensus       106 -~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A          106 -FLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             -TTTTTCTTCCEEECCSS
T ss_pred             -HHhCCCcCCCEEECCCC
Confidence             12334555555555553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.10  E-value=5e-10  Score=97.52  Aligned_cols=14  Identities=14%  Similarity=-0.097  Sum_probs=11.2

Q ss_pred             ccCCccEEeccccc
Q 016694          175 AFPQLRYLELSRLH  188 (384)
Q Consensus       175 ~~~~L~~L~l~~~~  188 (384)
                      .+++|+.|++.+++
T Consensus       157 ~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          157 RLSSLTHAYLFGNP  170 (229)
T ss_dssp             TCTTCCEEECTTSC
T ss_pred             CCCCCCEEEeeCCC
Confidence            67889999988763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.09  E-value=9.1e-11  Score=94.90  Aligned_cols=106  Identities=24%  Similarity=0.282  Sum_probs=62.1

Q ss_pred             CCCCceEecCCCcCcc--eecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            4 FRDIKYLQLGHFPRLQ--EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~--~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      .++|++|+++++ .+.  .+    |..+..+++|++|++++| .+++.   ..++++++|++|++++| .+.+..+....
T Consensus        16 ~~~l~~L~l~~n-~l~~~~~----~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~   85 (149)
T 2je0_A           16 PSDVKELVLDNS-RSNEGKL----EGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGGLEVLAE   85 (149)
T ss_dssp             GGGCSEEECTTC-BCBTTBC----CSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSCTHHHHH
T ss_pred             CccCeEEEccCC-cCChhHH----HHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccchHHHHhh
Confidence            456777777777 344  33    555567777777777776 55555   22456777777777777 55552222211


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                               .+++|++|+++++. ++.++. ......+++|++|++++|
T Consensus        86 ---------~l~~L~~L~ls~N~-i~~~~~-~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           86 ---------KCPNLTHLNLSGNK-IKDLST-IEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             ---------HCTTCCEEECTTSC-CCSHHH-HGGGGGCTTCCEEECTTC
T ss_pred             ---------hCCCCCEEECCCCc-CCChHH-HHHHhhCCCCCEEeCcCC
Confidence                     36667777777665 444331 113455666666666664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.08  E-value=1.3e-09  Score=94.20  Aligned_cols=61  Identities=21%  Similarity=0.239  Sum_probs=33.4

Q ss_pred             ccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCC
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCH  240 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  240 (384)
                      .+++|+.|+++++ .+..+....   ...+++|+.|+++++ .++.++. .+..+++|+.|++++++
T Consensus       102 ~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          102 GLFSLQLLLLNAN-KINCLRVDA---FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCC-CCCEeCHHH---cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence            4555666666555 333332211   245566667777664 3444443 35566777777777754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.08  E-value=1.1e-09  Score=94.75  Aligned_cols=150  Identities=13%  Similarity=0.143  Sum_probs=100.2

Q ss_pred             ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694            8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   87 (384)
                      +.++.+++ .+..+    |..+  .++|+.|++++| +++.+++.. +..+++|++|++++| .+..+.+....      
T Consensus        14 ~~v~c~~~-~l~~i----P~~l--~~~l~~L~l~~n-~i~~i~~~~-~~~l~~L~~L~Ls~N-~i~~~~~~~~~------   77 (220)
T 2v9t_B           14 NIVDCRGK-GLTEI----PTNL--PETITEIRLEQN-TIKVIPPGA-FSPYKKLRRIDLSNN-QISELAPDAFQ------   77 (220)
T ss_dssp             TEEECTTS-CCSSC----CSSC--CTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECCSS-CCCEECTTTTT------
T ss_pred             CEEEcCCC-CcCcC----CCcc--CcCCCEEECCCC-cCCCcCHhH-hhCCCCCCEEECCCC-cCCCcCHHHhh------
Confidence            45566665 56655    6544  368999999988 677775533 568899999999998 78877555432      


Q ss_pred             cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcc
Q 016694           88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ  167 (384)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~  167 (384)
                         .+++|++|+++++. ++.++.  .....+++|++|+++++ .++.++.                             
T Consensus        78 ---~l~~L~~L~Ls~N~-l~~l~~--~~f~~l~~L~~L~L~~N-~l~~~~~-----------------------------  121 (220)
T 2v9t_B           78 ---GLRSLNSLVLYGNK-ITELPK--SLFEGLFSLQLLLLNAN-KINCLRV-----------------------------  121 (220)
T ss_dssp             ---TCSSCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSS-CCCCCCT-----------------------------
T ss_pred             ---CCcCCCEEECCCCc-CCccCH--hHccCCCCCCEEECCCC-CCCEeCH-----------------------------
Confidence               67889999998876 666665  23456888888888885 3332210                             


Q ss_pred             cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCc
Q 016694          168 PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS  216 (384)
Q Consensus       168 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~  216 (384)
                         ..++.+++|+.|+++++ .+..+....   ...+++|+.|++++++
T Consensus       122 ---~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          122 ---DAFQDLHNLNLLSLYDN-KLQTIAKGT---FSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             ---TTTTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSSC
T ss_pred             ---HHcCCCCCCCEEECCCC-cCCEECHHH---HhCCCCCCEEEeCCCC
Confidence               11225778888888877 455443321   2457778888887754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.03  E-value=1.3e-09  Score=101.72  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=107.9

Q ss_pred             CCCceEecCCCcCcceecccCCCCCC-CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +.+++|+++++ .+..+.   +..+. .+++|++|++++| +++.+++.. +.++++|++|++++| .+..+++....  
T Consensus        39 ~~l~~L~Ls~N-~l~~l~---~~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~--  109 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLR---AEWTPTRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSN-HLHTLDEFLFS--  109 (361)
T ss_dssp             TTCSEEECCSS-CCCEEC---TTSSSSCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTTT--
T ss_pred             CCCCEEECCCC-CCCccC---hhhhhhcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCC-cCCcCCHHHhC--
Confidence            46899999999 677761   22344 8999999999998 788876543 569999999999999 88888765533  


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                             .+++|++|+++++. ++.++.  .....+++|+.|+++++ .++.+|.                         
T Consensus       110 -------~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~L~~N-~l~~l~~-------------------------  153 (361)
T 2xot_A          110 -------DLQALEVLLLYNNH-IVVVDR--NAFEDMAQLQKLYLSQN-QISRFPV-------------------------  153 (361)
T ss_dssp             -------TCTTCCEEECCSSC-CCEECT--TTTTTCTTCCEEECCSS-CCCSCCG-------------------------
T ss_pred             -------CCcCCCEEECCCCc-ccEECH--HHhCCcccCCEEECCCC-cCCeeCH-------------------------
Confidence                   78999999999987 555543  24567889999999885 3443321                         


Q ss_pred             CCcccccCCccccCCccEEeccccccccccccccccccccccc--ccEEeeccCc
Q 016694          164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFAN--LIRLKISECS  216 (384)
Q Consensus       164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~--L~~L~l~~~~  216 (384)
                          .++...+.+++|+.|+++++ .+..++...   ...++.  ++.|++.+++
T Consensus       154 ----~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~---~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          154 ----ELIKDGNKLPKLMLLDLSSN-KLKKLPLTD---LQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             ----GGTC----CTTCCEEECCSS-CCCCCCHHH---HHHSCHHHHTTEECCSSC
T ss_pred             ----HHhcCcccCCcCCEEECCCC-CCCccCHHH---hhhccHhhcceEEecCCC
Confidence                01111125778888888876 455443221   133343  3667776643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.98  E-value=4e-09  Score=91.17  Aligned_cols=151  Identities=12%  Similarity=0.114  Sum_probs=108.7

Q ss_pred             ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694            8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   87 (384)
                      +.++++++ .++.+    |..+  ...+++|++++| +++.+++...++.+++|++|++++| .++.+++....      
T Consensus        14 ~~l~~s~n-~l~~i----P~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~------   78 (220)
T 2v70_A           14 TTVDCSNQ-KLNKI----PEHI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE------   78 (220)
T ss_dssp             TEEECCSS-CCSSC----CSCC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTT------
T ss_pred             CEeEeCCC-CcccC----ccCC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhC------
Confidence            57888887 56666    6554  457899999998 7888766555679999999999999 88888765433      


Q ss_pred             cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcc
Q 016694           88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ  167 (384)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~  167 (384)
                         .+++|++|+++++. ++.++.  .....+++|++|+++++. ++.++                              
T Consensus        79 ---~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N~-l~~~~------------------------------  121 (220)
T 2v70_A           79 ---GASGVNEILLTSNR-LENVQH--KMFKGLESLKTLMLRSNR-ITCVG------------------------------  121 (220)
T ss_dssp             ---TCTTCCEEECCSSC-CCCCCG--GGGTTCSSCCEEECTTSC-CCCBC------------------------------
T ss_pred             ---CCCCCCEEECCCCc-cCccCH--hHhcCCcCCCEEECCCCc-CCeEC------------------------------
Confidence               78899999999887 566654  245678999999999863 33221                              


Q ss_pred             cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCc
Q 016694          168 PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS  216 (384)
Q Consensus       168 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~  216 (384)
                        ...++.+++|+.|+++++ .+..+....   ...+++|+.|++++++
T Consensus       122 --~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          122 --NDSFIGLSSVRLLSLYDN-QITTVAPGA---FDTLHSLSTLNLLANP  164 (220)
T ss_dssp             --TTSSTTCTTCSEEECTTS-CCCCBCTTT---TTTCTTCCEEECCSCC
T ss_pred             --HhHcCCCccCCEEECCCC-cCCEECHHH---hcCCCCCCEEEecCcC
Confidence              011226788888988887 555542221   3567888899888864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.97  E-value=2.5e-12  Score=127.02  Aligned_cols=205  Identities=14%  Similarity=0.087  Sum_probs=122.6

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCc------------ceecccccccccccccCCcccccce
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL------------EEVLHLEELNADKEHIGPLFPKLFE   97 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l------------~~~~~~~~~~~~~~~~~~~~~~L~~   97 (384)
                      ..+++|+.|+++++ +++.+|..  +++|++|++|+++++..+            ...++..     +.    .+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n-~L~~Lp~~--i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-----l~----~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVE-KSTVLQSE--LESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-----LQ----YFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHH-HHHHHHHH--HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-----HH----HHHHHHH
T ss_pred             ccCccceeccCChh-hHHhhHHH--HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-----HH----HHHhccc
Confidence            45778888888887 66666433  678888888887665211            1111111     11    4566776


Q ss_pred             eccCcccccccccc---CcccccC--CCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCC
Q 016694           98 LTLMDLPKLKRFCN---FTENIIE--MPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDE  172 (384)
Q Consensus        98 L~l~~~~~l~~~~~---~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~  172 (384)
                      |+......+..++.   ....+..  ...|+.|+++++ .++.+                                 .. 
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~l---------------------------------p~-  458 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVL---------------------------------CH-  458 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSC---------------------------------CC-
T ss_pred             CcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCC---------------------------------cC-
Confidence            66222221222211   0000000  123666666664 23322                                 11 


Q ss_pred             ccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeeccccccc
Q 016694          173 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE  252 (384)
Q Consensus       173 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~  252 (384)
                      ++.+++|+.|+++++ .+..++..    ...+++|+.|+++++ .++.+| .+..+++|+.|+++++ .++.+..+..+.
T Consensus       459 ~~~l~~L~~L~Ls~N-~l~~lp~~----~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~  530 (567)
T 1dce_A          459 LEQLLLVTHLDLSHN-RLRALPPA----LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLV  530 (567)
T ss_dssp             GGGGTTCCEEECCSS-CCCCCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGG
T ss_pred             ccccccCcEeecCcc-cccccchh----hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHh
Confidence            337889999999987 56555432    467899999999986 577786 7888999999999986 466653245567


Q ss_pred             ccCcccEEeecccccccEecccccCccccceeeecccceeec
Q 016694          253 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGL  294 (384)
Q Consensus       253 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  294 (384)
                      .+++|+.|+++++. +...+..    .......+|+|+.|++
T Consensus       531 ~l~~L~~L~L~~N~-l~~~~~~----~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          531 SCPRLVLLNLQGNS-LCQEEGI----QERLAEMLPSVSSILT  567 (567)
T ss_dssp             GCTTCCEEECTTSG-GGGSSSC----TTHHHHHCTTCSEEEC
T ss_pred             cCCCCCEEEecCCc-CCCCccH----HHHHHHHCcccCccCC
Confidence            89999999999854 5444321    0112223788888864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.95  E-value=8.3e-10  Score=91.93  Aligned_cols=82  Identities=15%  Similarity=0.086  Sum_probs=37.5

Q ss_pred             CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC  110 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  110 (384)
                      .+.+|+.|++++| +++.++.  +....++|++|++++| .+.++. ..      .    .+++|++|+++++. ++.++
T Consensus        17 ~~~~L~~L~l~~n-~l~~i~~--~~~~~~~L~~L~Ls~N-~l~~~~-~l------~----~l~~L~~L~Ls~N~-l~~~~   80 (176)
T 1a9n_A           17 NAVRDRELDLRGY-KIPVIEN--LGATLDQFDAIDFSDN-EIRKLD-GF------P----LLRRLKTLLVNNNR-ICRIG   80 (176)
T ss_dssp             CTTSCEEEECTTS-CCCSCCC--GGGGTTCCSEEECCSS-CCCEEC-CC------C----CCSSCCEEECCSSC-CCEEC
T ss_pred             CcCCceEEEeeCC-CCchhHH--hhhcCCCCCEEECCCC-CCCccc-cc------c----cCCCCCEEECCCCc-ccccC
Confidence            3445555555555 4444322  1222235555555555 454441 11      1    44555555555554 44443


Q ss_pred             cCcccccCCCCceeEeeccC
Q 016694          111 NFTENIIEMPELRYLAIENC  130 (384)
Q Consensus       111 ~~~~~~~~~~~L~~L~l~~c  130 (384)
                      .  .....+++|++|+++++
T Consensus        81 ~--~~~~~l~~L~~L~L~~N   98 (176)
T 1a9n_A           81 E--GLDQALPDLTELILTNN   98 (176)
T ss_dssp             S--CHHHHCTTCCEEECCSC
T ss_pred             c--chhhcCCCCCEEECCCC
Confidence            2  01134555555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.91  E-value=2.1e-09  Score=88.69  Aligned_cols=81  Identities=21%  Similarity=0.196  Sum_probs=37.8

Q ss_pred             cCCccEEecccccccc--cccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccc
Q 016694          176 FPQLRYLELSRLHKVQ--HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES  253 (384)
Q Consensus       176 ~~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~  253 (384)
                      .++|+.|+++++. +.  .++..    ...+++|+.|++++|. ++.+ ..+..+++|++|+++++. +... .+..+..
T Consensus        23 ~~~L~~L~l~~n~-l~~~~i~~~----~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~   93 (168)
T 2ell_A           23 PAAVRELVLDNCK-SNDGKIEGL----TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGG-LDMLAEK   93 (168)
T ss_dssp             TTSCSEEECCSCB-CBTTBCSSC----CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSC-CCHHHHH
T ss_pred             cccCCEEECCCCC-CChhhHHHH----HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchH-HHHHHhh
Confidence            4556666666552 32  22111    1445555556555543 4444 444555555555555543 3321 1223334


Q ss_pred             cCcccEEeeccc
Q 016694          254 LVNLGRMKIADC  265 (384)
Q Consensus       254 l~~L~~L~l~~c  265 (384)
                      +++|++|++++|
T Consensus        94 l~~L~~L~Ls~N  105 (168)
T 2ell_A           94 LPNLTHLNLSGN  105 (168)
T ss_dssp             CTTCCEEECBSS
T ss_pred             CCCCCEEeccCC
Confidence            555555555553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.91  E-value=9.1e-09  Score=86.88  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=72.3

Q ss_pred             ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694            8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   87 (384)
                      +.++++++ .++.+    |..+.  .+|++|++++| +++.+++...++.+++|++|++++| .+..+.+....      
T Consensus        11 ~~l~~s~~-~l~~i----p~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~------   75 (192)
T 1w8a_A           11 TTVDCTGR-GLKEI----PRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE------   75 (192)
T ss_dssp             TEEECTTS-CCSSC----CSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT------
T ss_pred             CEEEcCCC-CcCcC----ccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcC------
Confidence            67788877 56666    65543  48889999888 6777766444678889999999888 77777554432      


Q ss_pred             cCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                         .+++|++|+++++. ++.++.  .....+++|++|+++++
T Consensus        76 ---~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           76 ---GASHIQELQLGENK-IKEISN--KMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             ---TCTTCCEEECCSCC-CCEECS--SSSTTCTTCCEEECCSS
T ss_pred             ---CcccCCEEECCCCc-CCccCH--HHhcCCCCCCEEECCCC
Confidence               67788888888876 555554  23456777777777775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=2.9e-08  Score=91.22  Aligned_cols=101  Identities=18%  Similarity=0.155  Sum_probs=63.1

Q ss_pred             CCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccc-eeecccCCCCceecCC
Q 016694          228 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELG-YLGLDCLPSLTSFCLG  306 (384)
Q Consensus       228 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~l~~~  306 (384)
                      +++|+.+++.++ +++.++. ..+.++++|+++++.+.  ++.+...       ....+++|+ .+++.+  +++.+...
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred             cCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc--cceEEchh
Confidence            677788887765 3666633 33566777888887762  5555432       222366677 777765  66666554


Q ss_pred             CcccCCCCccEEEeccCCCCCccCCC-CcCCCCCeeec
Q 016694          307 NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVK  343 (384)
Q Consensus       307 ~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~  343 (384)
                       .+.+|++|+++++.+. .++.++.. +.++++|+.++
T Consensus       292 -aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          292 -AFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             -TTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             -hhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence             3667788888887554 56666653 44567777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.84  E-value=8.6e-09  Score=87.13  Aligned_cols=119  Identities=12%  Similarity=0.149  Sum_probs=79.9

Q ss_pred             ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694            8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   87 (384)
                      +.++++++ .+..+    |..+  .++|++|+++++ +++.++.  .+.++++|++|++++| .+..+++..+.      
T Consensus        13 ~~l~~~~~-~l~~i----p~~~--~~~l~~L~L~~n-~i~~ip~--~~~~l~~L~~L~Ls~N-~i~~i~~~~f~------   75 (193)
T 2wfh_A           13 TVVRCSNK-GLKVL----PKGI--PRDVTELYLDGN-QFTLVPK--ELSNYKHLTLIDLSNN-RISTLSNQSFS------   75 (193)
T ss_dssp             TEEECTTS-CCSSC----CSCC--CTTCCEEECCSS-CCCSCCG--GGGGCTTCCEEECCSS-CCCCCCTTTTT------
T ss_pred             CEEEcCCC-CCCcC----CCCC--CCCCCEEECCCC-cCchhHH--HhhcccCCCEEECCCC-cCCEeCHhHcc------
Confidence            45666666 56655    5543  367888888887 6666642  3568888888888888 77777654432      


Q ss_pred             cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCC
Q 016694           88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKE  150 (384)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~  150 (384)
                         .+++|++|+++++. ++.++.  .....+++|+.|+++++ .++.++      +++|++|.+++++
T Consensus        76 ---~l~~L~~L~Ls~N~-l~~i~~--~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           76 ---NMTQLLTLILSYNR-LRCIPP--RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             ---TCTTCCEEECCSSC-CCBCCT--TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---CCCCCCEEECCCCc-cCEeCH--HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence               67788888888776 555554  23556788888888875 344443      3457788887665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.84  E-value=2.8e-09  Score=86.06  Aligned_cols=128  Identities=14%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             cccccEEeeccCccc-ccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccc
Q 016694          204 FANLIRLKISECSKL-QKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG  282 (384)
Q Consensus       204 ~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  282 (384)
                      .++|++|++++|..- ..+|..+..+++|+.|++++| .++.+   ..+..+++|++|++++|. +...+..       .
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~~~~-------~   83 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR-VSGGLEV-------L   83 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC-CCSCTHH-------H
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc-ccchHHH-------H
Confidence            456666666665322 255555566667777777665 34443   334556677777776643 3321111       1


Q ss_pred             eeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCC----CCcCCCCCeeeccC
Q 016694          283 CVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ----GVVDAPKLNKVKPT  345 (384)
Q Consensus       283 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~----~~~~~~~L~~l~i~  345 (384)
                      ...+++|++|+++++ .++.++.......+++|++|++++| .++.+|.    .+..+++|++++++
T Consensus        84 ~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           84 AEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            112666777777664 3554432123566788888888877 4555554    34557788887765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=3.3e-08  Score=90.86  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=66.5

Q ss_pred             ccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccccCccc-EEeecccccccEecccccCccc
Q 016694          203 AFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLG-RMKIADCKMIEQIIQLQVGEEA  280 (384)
Q Consensus       203 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~  280 (384)
                      .+++|+.+++.++ .++.++. .+..+.+|+.+++.+.  ++.+.. ..+.++++|+ .+++.+  .++.+...      
T Consensus       224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~------  291 (329)
T 3sb4_A          224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFG------  291 (329)
T ss_dssp             HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-TTTTTCTTCCEEEEECT--TCCEECTT------
T ss_pred             hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-HHhhCChhccEEEEEcc--cceEEchh------
Confidence            3677888888764 3666654 3567778888888763  666633 3456778888 888876  45555332      


Q ss_pred             cceeeecccceeecccCCCCceecCCCcccCCCCccEEE
Q 016694          281 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVV  319 (384)
Q Consensus       281 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~  319 (384)
                       ....+++|+.|++.+ .+++.+... .+.++++|++++
T Consensus       292 -aF~~c~~L~~l~l~~-n~i~~I~~~-aF~~~~~L~~ly  327 (329)
T 3sb4_A          292 -AFMGCDNLRYVLATG-DKITTLGDE-LFGNGVPSKLIY  327 (329)
T ss_dssp             -TTTTCTTEEEEEECS-SCCCEECTT-TTCTTCCCCEEE
T ss_pred             -hhhCCccCCEEEeCC-CccCccchh-hhcCCcchhhhc
Confidence             222377788888754 467777654 366778888775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.78  E-value=6.6e-08  Score=81.65  Aligned_cols=125  Identities=12%  Similarity=0.082  Sum_probs=85.5

Q ss_pred             cEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCccc
Q 016694           36 RHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN  115 (384)
Q Consensus        36 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  115 (384)
                      ++++++++ +++.+|..    -.++|++|++++| .+..++...      .    .+++|++|+++++. ++.++.  ..
T Consensus        13 ~~l~~~~~-~l~~ip~~----~~~~l~~L~L~~n-~i~~ip~~~------~----~l~~L~~L~Ls~N~-i~~i~~--~~   73 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKG----IPRDVTELYLDGN-QFTLVPKEL------S----NYKHLTLIDLSNNR-ISTLSN--QS   73 (193)
T ss_dssp             TEEECTTS-CCSSCCSC----CCTTCCEEECCSS-CCCSCCGGG------G----GCTTCCEEECCSSC-CCCCCT--TT
T ss_pred             CEEEcCCC-CCCcCCCC----CCCCCCEEECCCC-cCchhHHHh------h----cccCCCEEECCCCc-CCEeCH--hH
Confidence            67888876 67777532    2368999999999 788776322      1    78899999999887 666654  24


Q ss_pred             ccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccc
Q 016694          116 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK  195 (384)
Q Consensus       116 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~  195 (384)
                      ...+++|++|+++++ .++.++.                                ..++.+++|+.|+++++ .+..++.
T Consensus        74 f~~l~~L~~L~Ls~N-~l~~i~~--------------------------------~~f~~l~~L~~L~L~~N-~l~~~~~  119 (193)
T 2wfh_A           74 FSNMTQLLTLILSYN-RLRCIPP--------------------------------RTFDGLKSLRLLSLHGN-DISVVPE  119 (193)
T ss_dssp             TTTCTTCCEEECCSS-CCCBCCT--------------------------------TTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred             ccCCCCCCEEECCCC-ccCEeCH--------------------------------HHhCCCCCCCEEECCCC-CCCeeCh
Confidence            567889999999885 3443321                                01226788888888887 5555433


Q ss_pred             cccccccccccccEEeeccCc
Q 016694          196 ENDESNKAFANLIRLKISECS  216 (384)
Q Consensus       196 ~~~~~~~~~~~L~~L~l~~~~  216 (384)
                      ..   ...+++|+.|++++++
T Consensus       120 ~~---~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          120 GA---FNDLSALSHLAIGANP  137 (193)
T ss_dssp             TT---TTTCTTCCEEECCSSC
T ss_pred             hh---hhcCccccEEEeCCCC
Confidence            21   2457788888888754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.78  E-value=1.1e-08  Score=85.09  Aligned_cols=106  Identities=18%  Similarity=0.167  Sum_probs=59.5

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCC-CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFN-NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      .+++|++|+++++ .+..+    |. +..+. +|++|++++| .++++.   .++.+++|++|++++| .+..+++....
T Consensus        17 ~~~~L~~L~l~~n-~l~~i----~~-~~~~~~~L~~L~Ls~N-~l~~~~---~l~~l~~L~~L~Ls~N-~l~~~~~~~~~   85 (176)
T 1a9n_A           17 NAVRDRELDLRGY-KIPVI----EN-LGATLDQFDAIDFSDN-EIRKLD---GFPLLRRLKTLLVNNN-RICRIGEGLDQ   85 (176)
T ss_dssp             CTTSCEEEECTTS-CCCSC----CC-GGGGTTCCSEEECCSS-CCCEEC---CCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred             CcCCceEEEeeCC-CCchh----HH-hhhcCCCCCEEECCCC-CCCccc---ccccCCCCCEEECCCC-cccccCcchhh
Confidence            3456677777766 45443    22 33333 6777777766 555541   1356677777777776 66666543311


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                               .+++|++|+++++. ++.++. ......+++|+.|+++++
T Consensus        86 ---------~l~~L~~L~L~~N~-i~~~~~-~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           86 ---------ALPDLTELILTNNS-LVELGD-LDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             ---------HCTTCCEEECCSCC-CCCGGG-GGGGGGCTTCCEEECCSS
T ss_pred             ---------cCCCCCEEECCCCc-CCcchh-hHhhhcCCCCCEEEecCC
Confidence                     56667777776665 444443 123345566666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.77  E-value=2.9e-08  Score=83.75  Aligned_cols=107  Identities=16%  Similarity=0.156  Sum_probs=85.2

Q ss_pred             CCCceEecCCCcCcceecccCCC--CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQAL--PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~--~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+|++|+++++ .+..+    ++  .++.+++|++|++++| +++++.+.. ++++++|++|++++| .+..+++.... 
T Consensus        29 ~~l~~L~l~~n-~i~~~----~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~-   99 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRI----SSDGLFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-KIKEISNKMFL-   99 (192)
T ss_dssp             TTCSEEECCSC-CCCSB----CCSCSGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-CCCEECSSSST-
T ss_pred             CCCCEEECCCC-cCCcc----CCccccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCC-cCCccCHHHhc-
Confidence            48999999999 56665    43  3688999999999998 778775544 578999999999999 89888775432 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                              .+++|++|+++++. ++.+..  .....+++|++|++++++
T Consensus       100 --------~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          100 --------GLHQLKTLNLYDNQ-ISCVMP--GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             --------TCTTCCEEECCSSC-CCEECT--TSSTTCTTCCEEECTTCC
T ss_pred             --------CCCCCCEEECCCCc-CCeeCH--HHhhcCCCCCEEEeCCCC
Confidence                    68999999999987 555533  256678899999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.75  E-value=3.8e-08  Score=81.78  Aligned_cols=102  Identities=15%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      ++|++|++++| +++.+++. .++.+++|++|++++| .+..+++....         .+++|++|+++++. ++.++. 
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~N~-l~~~~~-   93 (177)
T 2o6r_A           28 SSATRLELESN-KLQSLPHG-VFDKLTQLTKLSLSQN-QIQSLPDGVFD---------KLTKLTILYLHENK-LQSLPN-   93 (177)
T ss_dssp             TTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CCCCCT-
T ss_pred             CCCcEEEeCCC-cccEeCHH-HhcCcccccEEECCCC-cceEeChhHcc---------CCCccCEEECCCCC-ccccCH-
Confidence            56666666665 44544332 2345666666666666 55555443321         45566666666554 444433 


Q ss_pred             cccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCC
Q 016694          113 TENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKE  150 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~  150 (384)
                       .....+++|++|+++++ .++.++      .++|++|++++++
T Consensus        94 -~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           94 -GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             -TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence             12344566666666654 333332      2345666665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.74  E-value=1.9e-09  Score=109.57  Aligned_cols=59  Identities=17%  Similarity=0.088  Sum_probs=25.6

Q ss_pred             hcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeecc
Q 016694           56 RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN  129 (384)
Q Consensus        56 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  129 (384)
                      ..+++|++|++++| .+..++...+          .+++|++|+++++. ++.+|.   .+..+++|++|++++
T Consensus       221 ~~l~~L~~L~Ls~n-~l~~l~~~~~----------~l~~L~~L~Ls~N~-l~~lp~---~~~~l~~L~~L~Ls~  279 (727)
T 4b8c_D          221 YDDQLWHALDLSNL-QIFNISANIF----------KYDFLTRLYLNGNS-LTELPA---EIKNLSNLRVLDLSH  279 (727)
T ss_dssp             -CCCCCCEEECTTS-CCSCCCGGGG----------GCCSCSCCBCTTSC-CSCCCG---GGGGGTTCCEEECTT
T ss_pred             ccCCCCcEEECCCC-CCCCCChhhc----------CCCCCCEEEeeCCc-CcccCh---hhhCCCCCCEEeCcC
Confidence            34455555555554 3444333221          34445555554443 333433   334444444444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.72  E-value=2.7e-08  Score=98.18  Aligned_cols=102  Identities=24%  Similarity=0.318  Sum_probs=79.3

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ..|++|+++++ .+..+    |. ++.+++|++|++++| +++.+|..  ++++++|++|++++| .+++++ ...    
T Consensus       441 ~~L~~L~Ls~n-~l~~l----p~-~~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N-~l~~lp-~l~----  505 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTVL----CH-LEQLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASDN-ALENVD-GVA----  505 (567)
T ss_dssp             TTCSEEECTTS-CCSSC----CC-GGGGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGT----
T ss_pred             cCceEEEecCC-CCCCC----cC-ccccccCcEeecCcc-cccccchh--hhcCCCCCEEECCCC-CCCCCc-ccC----
Confidence            35888999998 66665    65 788999999999988 67766443  678999999999998 788765 221    


Q ss_pred             ccccCCcccccceeccCcccccccc--ccCcccccCCCCceeEeeccCC
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRF--CNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                            .+++|++|+++++. ++.+  |.   .+..+++|+.|++++++
T Consensus       506 ------~l~~L~~L~Ls~N~-l~~~~~p~---~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          506 ------NLPRLQELLLCNNR-LQQSAAIQ---PLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             ------TCSSCCEEECCSSC-CCSSSTTG---GGGGCTTCCEEECTTSG
T ss_pred             ------CCCCCcEEECCCCC-CCCCCCcH---HHhcCCCCCEEEecCCc
Confidence                  78899999998886 6666  44   56778899999998863

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.71  E-value=1.1e-07  Score=79.03  Aligned_cols=128  Identities=12%  Similarity=0.106  Sum_probs=84.5

Q ss_pred             CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCc
Q 016694           34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT  113 (384)
Q Consensus        34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  113 (384)
                      +.+.++++++ +++.++..    -.++|++|++++| .+..+++....         .+++|++|+++++. ++.++.  
T Consensus         8 ~~~~l~~~~~-~l~~~p~~----~~~~l~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~--   69 (177)
T 2o6r_A            8 SGTEIRCNSK-GLTSVPTG----IPSSATRLELESN-KLQSLPHGVFD---------KLTQLTKLSLSQNQ-IQSLPD--   69 (177)
T ss_dssp             ETTEEECCSS-CCSSCCTT----CCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCSEEECCSSC-CCCCCT--
T ss_pred             CCCEEEecCC-CCccCCCC----CCCCCcEEEeCCC-cccEeCHHHhc---------CcccccEEECCCCc-ceEeCh--
Confidence            3567787776 66666432    3478999999998 78777654432         67889999999886 666654  


Q ss_pred             ccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccc
Q 016694          114 ENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHL  193 (384)
Q Consensus       114 ~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l  193 (384)
                      .....+++|+.|+++++ .++.++..                                .++.+++|+.|+++++ .+..+
T Consensus        70 ~~~~~l~~L~~L~l~~N-~l~~~~~~--------------------------------~~~~l~~L~~L~l~~N-~l~~~  115 (177)
T 2o6r_A           70 GVFDKLTKLTILYLHEN-KLQSLPNG--------------------------------VFDKLTQLKELALDTN-QLKSV  115 (177)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTT--------------------------------TTTTCTTCCEEECCSS-CCSCC
T ss_pred             hHccCCCccCEEECCCC-CccccCHH--------------------------------HhhCCcccCEEECcCC-cceEe
Confidence            23467888999998885 34322100                                0125778888888877 55544


Q ss_pred             cccccccccccccccEEeeccCc
Q 016694          194 WKENDESNKAFANLIRLKISECS  216 (384)
Q Consensus       194 ~~~~~~~~~~~~~L~~L~l~~~~  216 (384)
                      +...   ...+++|++|++++++
T Consensus       116 ~~~~---~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          116 PDGI---FDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CTTT---TTTCTTCCEEECCSSC
T ss_pred             CHHH---hcCCcccCEEEecCCC
Confidence            3321   2457788888888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.70  E-value=4.3e-06  Score=78.77  Aligned_cols=150  Identities=13%  Similarity=0.087  Sum_probs=94.8

Q ss_pred             ccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCC----eeecccc
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGL----INVLTLS  249 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l----~~l~~~~  249 (384)
                      .+++|+.+++..  ++..+....|   .. .+|+.+.+.+  .++.++. .+..+++|+.+.+.+...-    ..+. ..
T Consensus       224 ~~~~L~~l~l~~--~l~~I~~~aF---~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~~  294 (401)
T 4fdw_A          224 KTSQLKTIEIPE--NVSTIGQEAF---RE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH-PY  294 (401)
T ss_dssp             TCTTCCCEECCT--TCCEECTTTT---TT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC-TT
T ss_pred             CCCCCCEEecCC--CccCcccccc---cc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEEC-HH
Confidence            677888888865  3555544333   22 5788888854  4666643 4567889999998764311    1232 34


Q ss_pred             cccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCcc
Q 016694          250 TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF  329 (384)
Q Consensus       250 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~l  329 (384)
                      .+.++++|+.+.+.+  .++.+...       ....+++|+.+.+.+  +++.+... .+.++ +|+++.+.++. +..+
T Consensus       295 aF~~c~~L~~l~l~~--~i~~I~~~-------aF~~c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n~-~~~l  360 (401)
T 4fdw_A          295 CLEGCPKLARFEIPE--SIRILGQG-------LLGGNRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGTT-PPQV  360 (401)
T ss_dssp             TTTTCTTCCEECCCT--TCCEECTT-------TTTTCCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCSS-CCBC
T ss_pred             HhhCCccCCeEEeCC--ceEEEhhh-------hhcCCCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCCC-Cccc
Confidence            467888999998874  46555432       222367888888844  47777654 36677 99999998873 3444


Q ss_pred             CCC-CcCC-CCCeeeccCCC
Q 016694          330 SQG-VVDA-PKLNKVKPTEE  347 (384)
Q Consensus       330 p~~-~~~~-~~L~~l~i~~~  347 (384)
                      +.+ +.+. .+++.+++...
T Consensus       361 ~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          361 FEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CCSSCCCSCTTCCEEEECGG
T ss_pred             ccccccCCCCCccEEEeCHH
Confidence            433 3334 46778888765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.66  E-value=2.7e-08  Score=101.19  Aligned_cols=107  Identities=17%  Similarity=0.192  Sum_probs=72.9

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++|+.|+++++ .+..+    |..+..+++|++|+|++| .++.+|. . ++++++|++|++++| .+..+|.... 
T Consensus       221 ~~l~~L~~L~Ls~n-~l~~l----~~~~~~l~~L~~L~Ls~N-~l~~lp~-~-~~~l~~L~~L~Ls~N-~l~~lp~~~~-  290 (727)
T 4b8c_D          221 YDDQLWHALDLSNL-QIFNI----SANIFKYDFLTRLYLNGN-SLTELPA-E-IKNLSNLRVLDLSHN-RLTSLPAELG-  290 (727)
T ss_dssp             -CCCCCCEEECTTS-CCSCC----CGGGGGCCSCSCCBCTTS-CCSCCCG-G-GGGGTTCCEEECTTS-CCSSCCSSGG-
T ss_pred             ccCCCCcEEECCCC-CCCCC----ChhhcCCCCCCEEEeeCC-cCcccCh-h-hhCCCCCCEEeCcCC-cCCccChhhc-
Confidence            34567777888777 45555    555667778888888877 5665543 2 467788888888887 6766644332 


Q ss_pred             cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                               .+++|++|+++++. ++.+|.   .+..+++|+.|+++++.
T Consensus       291 ---------~l~~L~~L~L~~N~-l~~lp~---~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          291 ---------SCFQLKYFYFFDNM-VTTLPW---EFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             ---------GGTTCSEEECCSSC-CCCCCS---STTSCTTCCCEECTTSC
T ss_pred             ---------CCCCCCEEECCCCC-CCccCh---hhhcCCCccEEeCCCCc
Confidence                     66778888887775 566665   46677788888877754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.61  E-value=1.5e-07  Score=77.60  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             CceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccc
Q 016694            7 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE   86 (384)
Q Consensus         7 L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   86 (384)
                      .+.++++++ .+..+    |..+  .++|++|++++| +++.+++.. ++++++|++|++++| .+..+++..+.     
T Consensus        11 ~~~l~~s~n-~l~~i----p~~~--~~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~f~-----   75 (170)
T 3g39_A           11 GTTVDCSGK-SLASV----PTGI--PTTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNN-QLTVLPAGVFD-----   75 (170)
T ss_dssp             TTEEECTTS-CCSSC----CSCC--CTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSS-CCCCCCTTTTT-----
T ss_pred             CCEEEeCCC-CcCcc----CccC--CCCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCC-CcCccChhhcc-----
Confidence            577888888 67766    7654  489999999998 778875543 568999999999999 88888775532     


Q ss_pred             ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                          .+++|++|+++++. ++.++.  .....+++|++|++++++
T Consensus        76 ----~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           76 ----KLTQLTQLSLNDNQ-LKSIPR--GAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             ----TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSSC
T ss_pred             ----CCCCCCEEECCCCc-cCEeCH--HHhcCCCCCCEEEeCCCC
Confidence                78899999999886 666665  235678899999998854

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.60  E-value=1.6e-07  Score=77.91  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=79.2

Q ss_pred             CceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccc
Q 016694            7 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE   86 (384)
Q Consensus         7 L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   86 (384)
                      -+.++++++ .+..+    |..+  .++|++|++++| +++++++.. ++++++|++|++++| .+..+++..+.     
T Consensus        14 ~~~l~~~~n-~l~~i----P~~~--~~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~-----   78 (174)
T 2r9u_A           14 QTLVNCQNI-RLASV----PAGI--PTDKQRLWLNNN-QITKLEPGV-FDHLVNLQQLYFNSN-KLTAIPTGVFD-----   78 (174)
T ss_dssp             SSEEECCSS-CCSSC----CSCC--CTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT-----
T ss_pred             CcEEEeCCC-CCCcc----CCCc--CCCCcEEEeCCC-CccccCHHH-hcCCcCCCEEECCCC-CCCccChhHhC-----
Confidence            367888887 56666    7654  389999999998 778775543 568999999999999 88888765432     


Q ss_pred             ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                          .+++|++|+++++. ++.++.  .....+++|++|++++++
T Consensus        79 ----~l~~L~~L~L~~N~-l~~l~~--~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           79 ----KLTQLTQLDLNDNH-LKSIPR--GAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             ----TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCSEEECCSSC
T ss_pred             ----CcchhhEEECCCCc-cceeCH--HHhccccCCCEEEeCCCC
Confidence                68899999999886 666665  235678899999998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.60  E-value=1.6e-09  Score=92.03  Aligned_cols=102  Identities=17%  Similarity=0.224  Sum_probs=69.2

Q ss_pred             CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccc
Q 016694           28 PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLK  107 (384)
Q Consensus        28 ~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  107 (384)
                      .+..+++|++|++++| +++.++   .++++++|++|++++| .+..++....          .+++|++|+++++. ++
T Consensus        43 ~~~~l~~L~~L~ls~n-~l~~l~---~~~~l~~L~~L~l~~n-~l~~l~~~~~----------~~~~L~~L~L~~N~-l~  106 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-NIEKIS---SLSGMENLRILSLGRN-LIKKIENLDA----------VADTLEELWISYNQ-IA  106 (198)
T ss_dssp             HHHHTTTCSEEECSEE-EESCCC---CHHHHTTCCEEEEEEE-EECSCSSHHH----------HHHHCSEEEEEEEE-CC
T ss_pred             HHhcCCCCCEEECCCC-CCcccc---ccccCCCCCEEECCCC-Ccccccchhh----------cCCcCCEEECcCCc-CC
Confidence            5667888888888887 666654   2567888888888888 6766654321          45788888888775 55


Q ss_pred             ccccCcccccCCCCceeEeeccCCCccccc-------CCCeeEEEecCCC
Q 016694          108 RFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKE  150 (384)
Q Consensus       108 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~  150 (384)
                      .++.    ...+++|++|+++++. ++.++       .++|++|.++++.
T Consensus       107 ~l~~----~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          107 SLSG----IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             CHHH----HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             cCCc----cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence            5542    4567788888887753 33221       4567888887655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.51  E-value=1.2e-05  Score=75.69  Aligned_cols=150  Identities=9%  Similarity=0.115  Sum_probs=101.0

Q ss_pred             cCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccC
Q 016694          176 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV  255 (384)
Q Consensus       176 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~  255 (384)
                      +.+|+.+.+..  +++.+....   ...+++|+.+.+.+  .++.++...-.-.+|+.+.+.+  +++.+.. ..+.+++
T Consensus       202 ~~~L~~l~lp~--~l~~I~~~a---F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~-~aF~~c~  271 (401)
T 4fdw_A          202 YAGIEEVLLPV--TLKEIGSQA---FLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIAS-RAFYYCP  271 (401)
T ss_dssp             TCCCSEEECCT--TCCEECTTT---TTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECT-TTTTTCT
T ss_pred             ecccCEEEeCC--chheehhhH---hhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEECh-hHhhCCC
Confidence            46778887763  355553332   25778899999975  4666654433337899999964  5776643 3457889


Q ss_pred             cccEEeeccccc----ccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCC
Q 016694          256 NLGRMKIADCKM----IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ  331 (384)
Q Consensus       256 ~L~~L~l~~c~~----l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~  331 (384)
                      +|+.+.+.+...    +..+...       ....+++|+.+.+.+  +++.+... .+.+|++|+.+.+..  .++.++.
T Consensus       272 ~L~~l~l~~~~~~~~~~~~I~~~-------aF~~c~~L~~l~l~~--~i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~  339 (401)
T 4fdw_A          272 ELAEVTTYGSTFNDDPEAMIHPY-------CLEGCPKLARFEIPE--SIRILGQG-LLGGNRKVTQLTIPA--NVTQINF  339 (401)
T ss_dssp             TCCEEEEESSCCCCCTTCEECTT-------TTTTCTTCCEECCCT--TCCEECTT-TTTTCCSCCEEEECT--TCCEECT
T ss_pred             CCCEEEeCCccccCCcccEECHH-------HhhCCccCCeEEeCC--ceEEEhhh-hhcCCCCccEEEECc--cccEEcH
Confidence            999999976321    1123221       222378899998873  57777664 377899999999955  4777765


Q ss_pred             C-CcCCCCCeeeccCCCC
Q 016694          332 G-VVDAPKLNKVKPTEEE  348 (384)
Q Consensus       332 ~-~~~~~~L~~l~i~~~~  348 (384)
                      . +..+ +|+.+.+.++.
T Consensus       340 ~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TSSSSS-CCCEEEECCSS
T ss_pred             HhCCCC-CCCEEEEcCCC
Confidence            4 4456 99999999873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.49  E-value=4.5e-08  Score=80.56  Aligned_cols=90  Identities=11%  Similarity=0.164  Sum_probs=46.4

Q ss_pred             CcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcccccee---eecccceeecccCCCCceecCC
Q 016694          230 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCV---VFEELGYLGLDCLPSLTSFCLG  306 (384)
Q Consensus       230 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~c~~L~~l~~~  306 (384)
                      +|+.|++++|. +++..... ..++++|+.|++++|..+++.      |......   ..++|++|++++|+++++-...
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~------gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDG------CLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHH------HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             eEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHH------HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            45555555554 44332222 235555666666665544421      1100000   1345677777777666665443


Q ss_pred             CcccCCCCccEEEeccCCCCCc
Q 016694          307 NYALEFPSLEHVVVRQCPTMKI  328 (384)
Q Consensus       307 ~~~~~~~~L~~L~l~~c~~l~~  328 (384)
                      . +..+++|++|++++|+.++.
T Consensus       134 ~-L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          134 A-LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             H-GGGCTTCCEEEEESCTTCCC
T ss_pred             H-HhcCCCCCEEECCCCCCCCc
Confidence            2 34567777777777776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.48  E-value=3.6e-09  Score=89.82  Aligned_cols=147  Identities=16%  Similarity=0.101  Sum_probs=97.3

Q ss_pred             CCccEEEeecCC-CCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccccc
Q 016694           33 NNLRHLVVDDCT-NMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN  111 (384)
Q Consensus        33 ~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  111 (384)
                      -+|+...+.++. .++.++ . .++.+++|++|++++| .+..++ ..      .    .+++|++|+++++. ++.++.
T Consensus        23 l~l~~~~l~~~~~~l~~l~-~-~~~~l~~L~~L~ls~n-~l~~l~-~~------~----~l~~L~~L~l~~n~-l~~l~~   87 (198)
T 1ds9_A           23 TEAEKVELHGMIPPIEKMD-A-TLSTLKACKHLALSTN-NIEKIS-SL------S----GMENLRILSLGRNL-IKKIEN   87 (198)
T ss_dssp             TTCSEEECCBCCTTCCCCH-H-HHHHTTTCSEEECSEE-EESCCC-CH------H----HHTTCCEEEEEEEE-ECSCSS
T ss_pred             cchheeEeccccCcHhhhh-H-HHhcCCCCCEEECCCC-CCcccc-cc------c----cCCCCCEEECCCCC-cccccc
Confidence            356666666542 233332 2 3679999999999999 787765 22      1    78899999999886 666665


Q ss_pred             CcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccc
Q 016694          112 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ  191 (384)
Q Consensus       112 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~  191 (384)
                         ....+++|++|+++++ .++.++                                  ..+.+++|+.|+++++ .+.
T Consensus        88 ---~~~~~~~L~~L~L~~N-~l~~l~----------------------------------~~~~l~~L~~L~l~~N-~i~  128 (198)
T 1ds9_A           88 ---LDAVADTLEELWISYN-QIASLS----------------------------------GIEKLVNLRVLYMSNN-KIT  128 (198)
T ss_dssp             ---HHHHHHHCSEEEEEEE-ECCCHH----------------------------------HHHHHHHSSEEEESEE-ECC
T ss_pred             ---hhhcCCcCCEEECcCC-cCCcCC----------------------------------ccccCCCCCEEECCCC-cCC
Confidence               4556789999999986 343221                                  1225788888988887 344


Q ss_pred             cccccccccccccccccEEeeccCcccccccCC----------cccCCCcCEEE
Q 016694          192 HLWKENDESNKAFANLIRLKISECSKLQKLVTP----------SWHLENLATLE  235 (384)
Q Consensus       192 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~----------~~~~~~L~~L~  235 (384)
                      .+..  ......+++|++|++++++.-...|..          +..+++|+.|+
T Consensus       129 ~~~~--~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          129 NWGE--IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CHHH--HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             chhH--HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            3221  011356788999999887543333221          56788899886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=1.5e-07  Score=77.40  Aligned_cols=95  Identities=13%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      .+|+.|++++|. +++..... +.+|++|++|++++|..+++..-....  ...   ...++|++|++++|..+++-.. 
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~--~~~---~~~~~L~~L~Ls~C~~ITD~Gl-  132 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLS--QLE---NLQKSMLEMEIISCGNVTDKGI-  132 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHH--TCH---HHHHHCCEEEEESCTTCCHHHH-
T ss_pred             ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHH--hcc---cccCCCCEEEcCCCCcCCHHHH-
Confidence            479999999995 77765554 368999999999999767543111100  000   0135799999999988876432 


Q ss_pred             cccccCCCCceeEeeccCCCcccc
Q 016694          113 TENIIEMPELRYLAIENCPDMETF  136 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c~~l~~~  136 (384)
                       ..+..+++|++|++++|+.+++.
T Consensus       133 -~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          133 -IALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             -HHGGGCTTCCEEEEESCTTCCCH
T ss_pred             -HHHhcCCCCCEEECCCCCCCCch
Confidence             23457899999999999998864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.35  E-value=9.1e-07  Score=73.23  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ++|++|+++++ .+..+   .|..+..+++|++|++++| +++.+++. .++++++|++|++++| .+..+++....   
T Consensus        33 ~~L~~L~Ls~N-~l~~~---~~~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~---  102 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKL---EPGVFDHLVNLQQLYFNSN-KLTAIPTG-VFDKLTQLTQLDLNDN-HLKSIPRGAFD---  102 (174)
T ss_dssp             TTCSEEECCSS-CCCCC---CTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred             CCCcEEEeCCC-Ccccc---CHHHhcCCcCCCEEECCCC-CCCccChh-HhCCcchhhEEECCCC-ccceeCHHHhc---
Confidence            68999999999 56654   1556789999999999998 88887554 4578999999999999 88888765432   


Q ss_pred             ccccCCcccccceeccCccc
Q 016694           85 KEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~  104 (384)
                            .+++|++|++++++
T Consensus       103 ------~l~~L~~L~L~~N~  116 (174)
T 2r9u_A          103 ------NLKSLTHIYLYNNP  116 (174)
T ss_dssp             ------TCTTCSEEECCSSC
T ss_pred             ------cccCCCEEEeCCCC
Confidence                  68899999999886

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.33  E-value=1.1e-06  Score=72.31  Aligned_cols=85  Identities=14%  Similarity=0.126  Sum_probs=69.6

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      .++|++|+++++ .+..+   .|..+..+++|++|++++| +++.+++. .++++++|++|++++| .++.+++....  
T Consensus        29 ~~~l~~L~L~~N-~i~~~---~~~~~~~l~~L~~L~Ls~N-~l~~l~~~-~f~~l~~L~~L~L~~N-~l~~~~~~~~~--   99 (170)
T 3g39_A           29 PTTTQVLYLYDN-QITKL---EPGVFDRLTQLTRLDLDNN-QLTVLPAG-VFDKLTQLTQLSLNDN-QLKSIPRGAFD--   99 (170)
T ss_dssp             CTTCSEEECCSS-CCCCC---CTTTTTTCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTT--
T ss_pred             CCCCcEEEcCCC-cCCcc---ChhhhcCcccCCEEECCCC-CcCccChh-hccCCCCCCEEECCCC-ccCEeCHHHhc--
Confidence            368999999999 56654   1556789999999999998 78887554 3578999999999999 89888775432  


Q ss_pred             cccccCCcccccceeccCccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~  104 (384)
                             .+++|++|++++++
T Consensus       100 -------~l~~L~~L~L~~N~  113 (170)
T 3g39_A          100 -------NLKSLTHIWLLNNP  113 (170)
T ss_dssp             -------TCTTCCEEECCSSC
T ss_pred             -------CCCCCCEEEeCCCC
Confidence                   78899999999886

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.28  E-value=3.3e-05  Score=72.55  Aligned_cols=83  Identities=13%  Similarity=0.064  Sum_probs=49.1

Q ss_pred             ccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccC
Q 016694          251 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS  330 (384)
Q Consensus       251 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp  330 (384)
                      +..+.+|+.+.+.+  .++.+...       ....+.+|+.+++.+  +++.+... .+.+|.+|+.+.+...  ++.+.
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp~--~v~~I~~~-aF~~c~~L~~i~lp~~--l~~I~  358 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIGEE-------AFESCTSLVSIDLPY--LVEEIGKR-SFRGCTSLSNINFPLS--LRKIG  358 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEECTT-------TTTTCTTCCEECCCT--TCCEECTT-TTTTCTTCCEECCCTT--CCEEC
T ss_pred             cccccccccccccc--ccceechh-------hhcCCCCCCEEEeCC--cccEEhHH-hccCCCCCCEEEECcc--ccEeh
Confidence            44566777777653  24444221       122266777777743  36666543 3667888888887543  56665


Q ss_pred             CC-CcCCCCCeeeccCCC
Q 016694          331 QG-VVDAPKLNKVKPTEE  347 (384)
Q Consensus       331 ~~-~~~~~~L~~l~i~~~  347 (384)
                      .. +..+++|+.+.+...
T Consensus       359 ~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG
T ss_pred             HHHhhCCCCCCEEEECCC
Confidence            43 345788888887654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.28  E-value=2.4e-08  Score=93.37  Aligned_cols=64  Identities=13%  Similarity=-0.028  Sum_probs=29.7

Q ss_pred             ccCCccEEecccccccccccccccc-cccccccccEEeeccCcccc-----cccCCcccCCCcCEEEeecCC
Q 016694          175 AFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQ-----KLVTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       175 ~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c~  240 (384)
                      ..++|++|+++++ .+.+.....+. ....+++|++|++++|. ++     .++..+...++|++|+++++.
T Consensus       181 ~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          181 GNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             TCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             cCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            3555666666655 23221100000 01234566666666653 22     222233455667777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.26  E-value=2.8e-06  Score=78.38  Aligned_cols=103  Identities=19%  Similarity=0.171  Sum_probs=75.1

Q ss_pred             eEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccccc
Q 016694            9 YLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHI   88 (384)
Q Consensus         9 ~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~   88 (384)
                      .++.++...+..+    |. +..+++|++|+|+++.++..+++.. ++++++|++|++++| .+..+++..+.       
T Consensus        12 ~v~~~~~n~l~~i----p~-l~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~-------   77 (347)
T 2ifg_A           12 GLRCTRDGALDSL----HH-LPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPDAFH-------   77 (347)
T ss_dssp             CEECCSSCCCTTT----TT-SCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTTGGG-------
T ss_pred             EEEcCCCCCCCcc----CC-CCCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-ccceeCHHHhc-------
Confidence            3455555345555    77 8888999999998633888886543 568999999999999 88888776543       


Q ss_pred             CCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           89 GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        89 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                        .+++|++|+|+++. ++.++.   .......|+.|++.+++
T Consensus        78 --~l~~L~~L~l~~N~-l~~~~~---~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           78 --FTPRLSRLNLSFNA-LESLSW---KTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             --SCSCCCEEECCSSC-CSCCCS---TTTCSCCCCEEECCSSC
T ss_pred             --CCcCCCEEeCCCCc-cceeCH---HHcccCCceEEEeeCCC
Confidence              78899999999876 677765   22222338888887753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.09  E-value=3.2e-06  Score=78.39  Aligned_cols=12  Identities=33%  Similarity=0.440  Sum_probs=6.4

Q ss_pred             CCCceeEeeccC
Q 016694          119 MPELRYLAIENC  130 (384)
Q Consensus       119 ~~~L~~L~l~~c  130 (384)
                      .++|++|++..|
T Consensus       192 ~~~L~~L~L~~~  203 (362)
T 2ra8_A          192 RPNLKSLEIISG  203 (362)
T ss_dssp             CTTCSEEEEECS
T ss_pred             CCCCcEEEEecC
Confidence            455555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.05  E-value=9.2e-06  Score=74.82  Aligned_cols=85  Identities=20%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             CCCCCCceEecCC-CcCcceecccCC-CCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccc
Q 016694            2 IGFRDIKYLQLGH-FPRLQEIWHGQA-LPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE   79 (384)
Q Consensus         2 ~~~~~L~~L~l~~-~~~~~~i~~~~p-~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   79 (384)
                      ..+++|++|+|++ + .+..+    | ..+..+++|++|+|++| +++++++.. ++++++|++|++++| .+..+++..
T Consensus        28 ~~~~~L~~L~l~~~n-~l~~~----~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~   99 (347)
T 2ifg_A           28 PGAENLTELYIENQQ-HLQHL----ELRDLRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-ALESLSWKT   99 (347)
T ss_dssp             CSCSCCSEEECCSCS-SCCEE----CGGGSCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CCSCCCSTT
T ss_pred             CCCCCeeEEEccCCC-CCCCc----ChhHhccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCC-ccceeCHHH
Confidence            4567899999997 6 77776    4 46789999999999998 788886654 579999999999999 888887655


Q ss_pred             cccccccccCCcccccceeccCccc
Q 016694           80 ELNADKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        80 ~~~~~~~~~~~~~~~L~~L~l~~~~  104 (384)
                      +.         .+ .|++|++.++.
T Consensus       100 ~~---------~~-~L~~l~l~~N~  114 (347)
T 2ifg_A          100 VQ---------GL-SLQELVLSGNP  114 (347)
T ss_dssp             TC---------SC-CCCEEECCSSC
T ss_pred             cc---------cC-CceEEEeeCCC
Confidence            32         23 39999998775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.03  E-value=0.00071  Score=63.31  Aligned_cols=101  Identities=13%  Similarity=0.122  Sum_probs=66.0

Q ss_pred             cccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceec
Q 016694          225 SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFC  304 (384)
Q Consensus       225 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  304 (384)
                      +..+.+|+.+.+..  +++.+.. ..+.++.+|+.+++.+  .++.+-..       ....+.+|+.+.+..  +++.+.
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~-------aF~~c~~L~~i~lp~--~l~~I~  358 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLPY--LVEEIGKR-------SFRGCTSLSNINFPL--SLRKIG  358 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCCT--TCCEECTT-------TTTTCTTCCEECCCT--TCCEEC
T ss_pred             cccccccccccccc--ccceech-hhhcCCCCCCEEEeCC--cccEEhHH-------hccCCCCCCEEEECc--cccEeh
Confidence            45678888888864  4666633 2356788999998864  35555322       222377888888853  377776


Q ss_pred             CCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeee
Q 016694          305 LGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKV  342 (384)
Q Consensus       305 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l  342 (384)
                      .. .+.+|++|+++.+...  ++.+...+.+.++|+.+
T Consensus       359 ~~-aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          359 AN-AFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TT-TBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred             HH-HhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence            54 3778999999998653  44454455567777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.92  E-value=3.4e-07  Score=85.51  Aligned_cols=11  Identities=27%  Similarity=0.434  Sum_probs=6.7

Q ss_pred             CCCCEEEEecc
Q 016694           59 NNLRWLEVRNC   69 (384)
Q Consensus        59 ~~L~~L~l~~~   69 (384)
                      ++|++|++++|
T Consensus        72 ~~L~~L~Ls~n   82 (372)
T 3un9_A           72 SSLRQLNLAGV   82 (372)
T ss_dssp             TTCCEEECTTS
T ss_pred             hhCCEEEecCC
Confidence            55666666666

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.77  E-value=0.0027  Score=59.28  Aligned_cols=102  Identities=11%  Similarity=0.055  Sum_probs=57.7

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecC--CCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDC--TNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c--~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      .|+.+.+.+.  ++.|-   ..++..+.+|+.+.+..+  ..++.+...+ +.++.+|+.+.+.+  .++.+....+.  
T Consensus        65 ~L~sI~iP~s--vt~Ig---~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a-F~~c~~L~~i~~~~--~~~~I~~~aF~--  134 (394)
T 4gt6_A           65 VLTSVQIPDT--VTEIG---SNAFYNCTSLKRVTIQDNKPSCVKKIGRQA-FMFCSELTDIPILD--SVTEIDSEAFH--  134 (394)
T ss_dssp             CCCEEEECTT--CCEEC---TTTTTTCTTCCEEEEGGGCCCCCCEECTTT-TTTCTTCCBCGGGT--TCSEECTTTTT--
T ss_pred             cCEEEEECCC--eeEEh---HHHhhCCccCceEeecCCCCCeeeEechhh-chhcccceeeccCC--ccceehhhhhh--
Confidence            4788877643  45541   235678899999998764  2355553333 45777777766544  35555444332  


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeec
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIE  128 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~  128 (384)
                             .+.+|+.+.+..  .++.+..  .....+..|+.+.+.
T Consensus       135 -------~c~~L~~i~lp~--~~~~I~~--~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          135 -------HCEELDTVTIPE--GVTSVAD--GMFSYCYSLHTVTLP  168 (394)
T ss_dssp             -------TCTTCCEEECCT--TCCEECT--TTTTTCTTCCEEECC
T ss_pred             -------hhcccccccccc--eeeeecc--cceeccccccccccc
Confidence                   566777776643  2333332  122345566666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.76  E-value=2.3e-05  Score=72.60  Aligned_cols=116  Identities=19%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             CCCCCceEecCCCcCc--ceeccc---CCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecc
Q 016694            3 GFRDIKYLQLGHFPRL--QEIWHG---QALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLH   77 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~--~~i~~~---~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   77 (384)
                      .+++|+.|.+.+...-  +-.|..   ....+..+++|+.|++++|..+ .+++   + .+++|++|++..| .+..-..
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~---~-~~~~L~~L~L~~~-~l~~~~l  210 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK---K-PRPNLKSLEIISG-GLPDSVV  210 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS---C-BCTTCSEEEEECS-BCCHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc---c-cCCCCcEEEEecC-CCChHHH
Confidence            4689999999765210  111322   1122356789999999987433 2322   2 4799999999988 5542211


Q ss_pred             cccccccccccCCcccccceeccCccc-------cccccccCcccccCCCCceeEeeccCCC
Q 016694           78 LEELNADKEHIGPLFPKLFELTLMDLP-------KLKRFCNFTENIIEMPELRYLAIENCPD  132 (384)
Q Consensus        78 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~~~~L~~L~l~~c~~  132 (384)
                      ...   ...    .+|+|++|++....       .+..+.. ......+|+|++|++.+|..
T Consensus       211 ~~l---~~~----~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          211 EDI---LGS----DLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             HHH---HHS----BCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTT
T ss_pred             HHH---HHc----cCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCC
Confidence            010   011    57899999885321       1222221 11224589999999998754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.94  E-value=0.042  Score=51.07  Aligned_cols=107  Identities=12%  Similarity=0.093  Sum_probs=68.1

Q ss_pred             CCCCCCCceEecCCC--cCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccc
Q 016694            1 MIGFRDIKYLQLGHF--PRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHL   78 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~--~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   78 (384)
                      |.+|.+|+.+.+.++  ..++.+-   ..++..+.+|+.+.+..  +++.+... .+..+.+|+.+.+...  +..+...
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig---~~aF~~c~~L~~i~~~~--~~~~I~~~-aF~~c~~L~~i~lp~~--~~~I~~~  154 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIG---RQAFMFCSELTDIPILD--SVTEIDSE-AFHHCEELDTVTIPEG--VTSVADG  154 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEEC---TTTTTTCTTCCBCGGGT--TCSEECTT-TTTTCTTCCEEECCTT--CCEECTT
T ss_pred             hhCCccCceEeecCCCCCeeeEec---hhhchhcccceeeccCC--ccceehhh-hhhhhcccccccccce--eeeeccc
Confidence            467889999999764  2355551   23456778888877765  45555333 3568899999999653  5555444


Q ss_pred             ccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeecc
Q 016694           79 EELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN  129 (384)
Q Consensus        79 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  129 (384)
                      .+.         .+.+|+.+.+.+  .++.+..   .......|+.+.+..
T Consensus       155 ~F~---------~c~~L~~i~~~~--~~~~I~~---~aF~~~~l~~i~ip~  191 (394)
T 4gt6_A          155 MFS---------YCYSLHTVTLPD--SVTAIEE---RAFTGTALTQIHIPA  191 (394)
T ss_dssp             TTT---------TCTTCCEEECCT--TCCEECT---TTTTTCCCSEEEECT
T ss_pred             cee---------cccccccccccc--eeeEecc---ccccccceeEEEECC
Confidence            432         567788887754  3555544   333445677777754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.83  E-value=0.00041  Score=61.11  Aligned_cols=87  Identities=18%  Similarity=0.137  Sum_probs=56.8

Q ss_pred             CCCCccEEEeecCCCCcccCch-hHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPA-NLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF  109 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  109 (384)
                      .+++|+.|+|++| ++.++... ..++.+++|+.|++++| .+.++.....    +.    .+ +|++|++.+++.-..+
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~----l~----~l-~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDK----IK----GL-KLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGG----GT----TS-CCSEEECTTSTTGGGC
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhh----cc----cC-CcceEEccCCcCcccc
Confidence            5788999999988 67765432 24568899999999998 7776532221    11    22 8899999888844434


Q ss_pred             ccC----cccccCCCCceeEeec
Q 016694          110 CNF----TENIIEMPELRYLAIE  128 (384)
Q Consensus       110 ~~~----~~~~~~~~~L~~L~l~  128 (384)
                      +..    ......+|+|+.|+=.
T Consensus       237 ~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          237 RDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             SSHHHHHHHHHHHCTTCCEESSC
T ss_pred             CcchhHHHHHHHHCcccCeECCc
Confidence            320    0134568888888643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.78  E-value=0.00016  Score=60.19  Aligned_cols=12  Identities=0%  Similarity=0.011  Sum_probs=6.3

Q ss_pred             CCCCCEEEEecc
Q 016694           58 LNNLRWLEVRNC   69 (384)
Q Consensus        58 l~~L~~L~l~~~   69 (384)
                      .++|++|++++|
T Consensus        64 ~~~L~~L~Ls~n   75 (185)
T 1io0_A           64 NTYVKKFSIVGT   75 (185)
T ss_dssp             CCSCCEEECTTS
T ss_pred             CCCcCEEECcCC
Confidence            345555555555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.74  E-value=0.0012  Score=58.00  Aligned_cols=67  Identities=19%  Similarity=0.121  Sum_probs=42.0

Q ss_pred             hcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCc
Q 016694           56 RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM  133 (384)
Q Consensus        56 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l  133 (384)
                      .++++|++|++++| .+..+.+...   ...    .+++|++|+++++. ++.+.. ......+ +|+.|++.+++--
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~---~~~----~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSS---IVQ----KAPNLKILNLSGNE-LKSERE-LDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTT---HHH----HSTTCCEEECTTSC-CCSGGG-GGGGTTS-CCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCC-CCCCCccchh---HHh----hCCCCCEEECCCCc-cCCchh-hhhcccC-CcceEEccCCcCc
Confidence            46888888888888 7776543110   011    57888888888776 554432 1122223 7888888886643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.69  E-value=0.37  Score=44.20  Aligned_cols=76  Identities=9%  Similarity=-0.006  Sum_probs=46.7

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      .+|+.+.+..  .++.|-   ..++..+.+|+.+.+..  .++.+...+ +.++ +|+.+.+..  .++.+....+    
T Consensus        46 ~~i~~v~ip~--~vt~Ig---~~aF~~C~~L~~I~lp~--~v~~Ig~~a-F~~c-~l~~i~~~~--~l~~I~~~aF----  110 (379)
T 4h09_A           46 DRISEVRVNS--GITSIG---EANFNSCYNMTKVTVAS--TVTSIGDGA-FADT-KLQSYTGME--RVKKFGDYVF----  110 (379)
T ss_dssp             GGCSEEEECT--TEEEEC---TTTTTTCTTCCEEEECT--TCCEECTTT-TTTC-CCCEEEECT--TCCEECTTTT----
T ss_pred             cCCEEEEeCC--CccChH---HHHhhCCCCCCEEEeCC--cceEechhh-hcCC-CCceEECCc--eeeEecccee----
Confidence            4567777653  355551   23567889999999975  466665444 3455 688777754  4666654443    


Q ss_pred             ccccCCcccccceeccC
Q 016694           85 KEHIGPLFPKLFELTLM  101 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~  101 (384)
                            ...+|+++.+.
T Consensus       111 ------~~~~L~~i~lp  121 (379)
T 4h09_A          111 ------QGTDLDDFEFP  121 (379)
T ss_dssp             ------TTCCCSEEECC
T ss_pred             ------ccCCcccccCC
Confidence                  23467777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.56  E-value=0.00043  Score=57.51  Aligned_cols=12  Identities=0%  Similarity=0.099  Sum_probs=6.0

Q ss_pred             cccceeccCccc
Q 016694           93 PKLFELTLMDLP  104 (384)
Q Consensus        93 ~~L~~L~l~~~~  104 (384)
                      ++|++|+++++.
T Consensus        65 ~~L~~L~Ls~n~   76 (185)
T 1io0_A           65 TYVKKFSIVGTR   76 (185)
T ss_dssp             CSCCEEECTTSC
T ss_pred             CCcCEEECcCCC
Confidence            445555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.13  E-value=0.79  Score=41.93  Aligned_cols=126  Identities=12%  Similarity=0.170  Sum_probs=72.6

Q ss_pred             cccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccc
Q 016694          204 FANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG  282 (384)
Q Consensus       204 ~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  282 (384)
                      +.+|+.+.+..  .+..+.. .+..+..|+.+.+..  .++.+.. ..+..+.+|+.+.+..  .+..+...       .
T Consensus       216 ~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~-------a  281 (379)
T 4h09_A          216 GKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFYA--KVKTVPYL-------L  281 (379)
T ss_dssp             CSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEECC--CCSEECTT-------T
T ss_pred             ccccceeeecc--ceeEEccccccCCccceEEEcCC--CccEeCc-cccceeehhccccccc--cceecccc-------c
Confidence            44555555532  2333322 234566777777764  3555532 2345667778777753  34444221       1


Q ss_pred             eeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCC-CcCCCCCeeeccCCC
Q 016694          283 CVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE  347 (384)
Q Consensus       283 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~i~~~  347 (384)
                      ...+++|+.+.+.+ ..++.+... .+.+|.+|+.+.+..  .++.+... +.++.+|+.+.+...
T Consensus       282 F~~c~~L~~i~l~~-~~i~~I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          282 CSGCSNLTKVVMDN-SAIETLEPR-VFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTCTTCCEEEECC-TTCCEECTT-TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccccc-cccceehhh-hhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence            22267788888754 346666554 367889999998854  36666543 445788888887543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=88.88  E-value=0.54  Score=36.01  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=15.8

Q ss_pred             CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecc
Q 016694           34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC   69 (384)
Q Consensus        34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~   69 (384)
                      +|++|+|++| +++.+++ ..+..+++|++|++.+|
T Consensus        32 ~l~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGN-NLTALPP-GLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTS-CCSSCCT-TTGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCC-cCCccCh-hhhhhccccCEEEecCC
Confidence            4555555554 4444422 22334455555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=85.74  E-value=0.65  Score=35.54  Aligned_cols=52  Identities=13%  Similarity=-0.025  Sum_probs=35.3

Q ss_pred             EEEeecCCCCc--ccCchhHHhcC-CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccc
Q 016694           37 HLVVDDCTNML--SAIPANLIRCL-NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        37 ~L~l~~c~~l~--~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  104 (384)
                      +++.++. +++  .+| .    .+ ++|++|++++| .++.++...+.         .+++|+.|++.+++
T Consensus        12 ~v~Cs~~-~L~~~~vP-~----~lp~~l~~L~Ls~N-~l~~l~~~~f~---------~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRR-GLTWASLP-T----AFPVDTTELVLTGN-NLTALPPGLLD---------ALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSS-CCCTTTSC-S----CCCTTCSEEECTTS-CCSSCCTTTGG---------GCTTCCEEECCSSC
T ss_pred             EEEeCCC-CCccccCC-C----CCCcCCCEEECCCC-cCCccChhhhh---------hccccCEEEecCCC
Confidence            5566654 555  553 2    22 46889999988 78888765543         67788888887775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.63
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.43
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.43
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.43
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.05
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.95
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.68
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.55
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.33
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.31
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.77
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.16
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.42

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.1e-17  Score=153.25  Aligned_cols=79  Identities=20%  Similarity=0.339  Sum_probs=61.0

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +.+|++|+++++ .++.+     +.+..+++|++|++++| +++++++   ++++++|++|++++| .+.++++..    
T Consensus        43 l~~l~~L~l~~~-~I~~l-----~gl~~L~nL~~L~Ls~N-~l~~l~~---l~~L~~L~~L~L~~n-~i~~i~~l~----  107 (384)
T d2omza2          43 LDQVTTLQADRL-GIKSI-----DGVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADITPLA----  107 (384)
T ss_dssp             HTTCCEEECCSS-CCCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGT----
T ss_pred             hCCCCEEECCCC-CCCCc-----cccccCCCCCEEeCcCC-cCCCCcc---ccCCccccccccccc-ccccccccc----
Confidence            467899999988 67664     34678999999999998 7888754   578999999999999 777665432    


Q ss_pred             cccccCCcccccceeccCccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~  104 (384)
                             .+++|+.|++.++.
T Consensus       108 -------~l~~L~~L~~~~~~  121 (384)
T d2omza2         108 -------NLTNLTGLTLFNNQ  121 (384)
T ss_dssp             -------TCTTCCEEECCSSC
T ss_pred             -------cccccccccccccc
Confidence                   67788888776654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.8e-15  Score=136.05  Aligned_cols=289  Identities=13%  Similarity=0.233  Sum_probs=190.3

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++|++|+++++ .++.+    + .++.+++|++|++++| .+.++++   ++++++|+.|++.++ .+.........
T Consensus        63 ~~L~nL~~L~Ls~N-~l~~l----~-~l~~L~~L~~L~L~~n-~i~~i~~---l~~l~~L~~L~~~~~-~~~~~~~~~~~  131 (384)
T d2omza2          63 EYLNNLTQINFSNN-QLTDI----T-PLKNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNN-QITDIDPLKNL  131 (384)
T ss_dssp             GGCTTCCEEECCSS-CCCCC----G-GGTTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTC
T ss_pred             ccCCCCCEEeCcCC-cCCCC----c-cccCCccccccccccc-ccccccc---ccccccccccccccc-ccccccccccc
Confidence            35789999999999 68776    4 3789999999999999 6777654   468999999999988 55554332211


Q ss_pred             cccccccCCcccccceeccC-------------cccccccc---------------ccCcccccCCCCceeEeeccCCCc
Q 016694           82 NADKEHIGPLFPKLFELTLM-------------DLPKLKRF---------------CNFTENIIEMPELRYLAIENCPDM  133 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~-------------~~~~l~~~---------------~~~~~~~~~~~~L~~L~l~~c~~l  133 (384)
                      . ...........+..+...             ....+..+               .........+++++.++++++. +
T Consensus       132 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~-i  209 (384)
T d2omza2         132 T-NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-I  209 (384)
T ss_dssp             T-TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-C
T ss_pred             c-cccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCc-c
Confidence            0 000000000000000000             00000000               0001134457788999988753 3


Q ss_pred             ccc-c---CCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccE
Q 016694          134 ETF-I---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIR  209 (384)
Q Consensus       134 ~~~-~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~  209 (384)
                      +.+ +   .+++++|.++++....++                ..+.+++|+.+++.++ .+..+.     ....+++|++
T Consensus       210 ~~~~~~~~~~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~l~~n-~l~~~~-----~~~~~~~L~~  267 (384)
T d2omza2         210 SDITPLGILTNLDELSLNGNQLKDIG----------------TLASLTNLTDLDLANN-QISNLA-----PLSGLTKLTE  267 (384)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCG----------------GGGGCTTCSEEECCSS-CCCCCG-----GGTTCTTCSE
T ss_pred             CCCCcccccCCCCEEECCCCCCCCcc----------------hhhcccccchhccccC-ccCCCC-----cccccccCCE
Confidence            333 2   467899999876532211                1226889999999987 344432     2467889999


Q ss_pred             EeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeeccc
Q 016694          210 LKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEEL  289 (384)
Q Consensus       210 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  289 (384)
                      |+++++ .+..++ .+..++.++.+.+..+. ++.+   .....+++++.|+++++ .+.++..         ...+++|
T Consensus       268 L~l~~~-~l~~~~-~~~~~~~l~~l~~~~n~-l~~~---~~~~~~~~l~~L~ls~n-~l~~l~~---------l~~l~~L  331 (384)
T d2omza2         268 LKLGAN-QISNIS-PLAGLTALTNLELNENQ-LEDI---SPISNLKNLTYLTLYFN-NISDISP---------VSSLTKL  331 (384)
T ss_dssp             EECCSS-CCCCCG-GGTTCTTCSEEECCSSC-CSCC---GGGGGCTTCSEEECCSS-CCSCCGG---------GGGCTTC
T ss_pred             eeccCc-ccCCCC-ccccccccccccccccc-cccc---cccchhcccCeEECCCC-CCCCCcc---------cccCCCC
Confidence            999886 455553 36778889999998864 5443   23567899999999985 4555431         1238999


Q ss_pred             ceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          290 GYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       290 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      ++|++++| +++.++.   +..+++|++|++++| +++.++. +.++++|++++++++
T Consensus       332 ~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 QRLFFANN-KVSDVSS---LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CEEECCCC-CCCCChh---HcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence            99999998 7777653   678999999999887 5667664 667899999999876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=1.3e-14  Score=130.17  Aligned_cols=254  Identities=13%  Similarity=0.082  Sum_probs=150.5

Q ss_pred             cceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccce
Q 016694           18 LQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFE   97 (384)
Q Consensus        18 ~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~   97 (384)
                      ++.+    |..+  .+++++|++++| +++.+++.+ +.++++|++|++++| .+..+++....         .+++|++
T Consensus        22 L~~l----P~~l--~~~l~~L~Ls~N-~i~~l~~~~-f~~l~~L~~L~l~~n-~~~~i~~~~f~---------~l~~L~~   83 (305)
T d1xkua_          22 LEKV----PKDL--PPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINN-KISKISPGAFA---------PLVKLER   83 (305)
T ss_dssp             CCSC----CCSC--CTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCCCBCTTTTT---------TCTTCCE
T ss_pred             CCcc----CCCC--CCCCCEEECcCC-cCCCcChhH-hhccccccccccccc-cccccchhhhh---------CCCccCE
Confidence            5555    6654  378999999998 788886543 568899999999999 67777554432         6788999


Q ss_pred             eccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccC
Q 016694           98 LTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFP  177 (384)
Q Consensus        98 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  177 (384)
                      |++.++. ++.++.     ...+.+..|....+ .+..++.                             ..+   ....
T Consensus        84 L~l~~n~-l~~l~~-----~~~~~l~~L~~~~n-~l~~l~~-----------------------------~~~---~~~~  124 (305)
T d1xkua_          84 LYLSKNQ-LKELPE-----KMPKTLQELRVHEN-EITKVRK-----------------------------SVF---NGLN  124 (305)
T ss_dssp             EECCSSC-CSBCCS-----SCCTTCCEEECCSS-CCCBBCH-----------------------------HHH---TTCT
T ss_pred             ecccCCc-cCcCcc-----chhhhhhhhhcccc-chhhhhh-----------------------------hhh---hccc
Confidence            9998886 777765     23456777777663 2222210                             000   0233


Q ss_pred             CccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcc
Q 016694          178 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL  257 (384)
Q Consensus       178 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L  257 (384)
                      .+..++...+........  ......+++|+.+++.++ .+..++..  .+++|+.|++.++......  +..+..++.+
T Consensus       125 ~~~~l~~~~n~~~~~~~~--~~~~~~l~~L~~l~l~~n-~l~~l~~~--~~~~L~~L~l~~n~~~~~~--~~~~~~~~~l  197 (305)
T d1xkua_         125 QMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADT-NITTIPQG--LPPSLTELHLDGNKITKVD--AASLKGLNNL  197 (305)
T ss_dssp             TCCEEECCSSCCCGGGBC--TTGGGGCTTCCEEECCSS-CCCSCCSS--CCTTCSEEECTTSCCCEEC--TGGGTTCTTC
T ss_pred             cccccccccccccccCCC--ccccccccccCccccccC-CccccCcc--cCCccCEEECCCCcCCCCC--hhHhhccccc
Confidence            334444433221111000  001244566677777665 34445432  3567777777765433332  3345566777


Q ss_pred             cEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC----
Q 016694          258 GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV----  333 (384)
Q Consensus       258 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~----  333 (384)
                      +.|+++++ .+..+...       ....+++|++|+++++ +++.++.  .+..+++|++|+++++ +++.++...    
T Consensus       198 ~~L~~s~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~L~~lp~--~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~  265 (305)
T d1xkua_         198 AKLGLSFN-SISAVDNG-------SLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYLHNN-NISAIGSNDFCPP  265 (305)
T ss_dssp             CEEECCSS-CCCEECTT-------TGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEECCSS-CCCCCCTTSSSCS
T ss_pred             cccccccc-cccccccc-------cccccccceeeecccc-ccccccc--ccccccCCCEEECCCC-ccCccChhhccCc
Confidence            77777764 45544322       1122677777777776 5666643  3566788888888876 466665332    


Q ss_pred             ---cCCCCCeeeccCCC
Q 016694          334 ---VDAPKLNKVKPTEE  347 (384)
Q Consensus       334 ---~~~~~L~~l~i~~~  347 (384)
                         ...++|+.+.++++
T Consensus       266 ~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             SCCTTSCCCSEEECCSS
T ss_pred             chhcccCCCCEEECCCC
Confidence               23567788888877

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.63  E-value=3.2e-15  Score=134.83  Aligned_cols=108  Identities=17%  Similarity=0.208  Sum_probs=82.7

Q ss_pred             CCceEecCCCcCcc---eecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            6 DIKYLQLGHFPRLQ---EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         6 ~L~~L~l~~~~~~~---~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      ++++|+++++ .+.   .+    |++++.+++|++|++++|.++.+..|.. ++++++|++|++++| .+...++.... 
T Consensus        51 ~v~~L~L~~~-~l~g~~~l----p~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~~~~~~-  122 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPI----PSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLS-  122 (313)
T ss_dssp             CEEEEEEECC-CCSSCEEC----CGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGG-
T ss_pred             EEEEEECCCC-CCCCCCCC----ChHHhcCccccccccccccccccccccc-cccccccchhhhccc-ccccccccccc-
Confidence            6888999887 333   34    7888999999999999866777544544 578999999999999 77777655432 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCC
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD  132 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~  132 (384)
                              ..++|+.++++.+.....+|.   .+..++.++.++++++..
T Consensus       123 --------~~~~L~~l~l~~N~~~~~~p~---~l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_         123 --------QIKTLVTLDFSYNALSGTLPP---SISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             --------GCTTCCEEECCSSEEESCCCG---GGGGCTTCCEEECCSSCC
T ss_pred             --------chhhhcccccccccccccCch---hhccCcccceeecccccc
Confidence                    677899999988876666665   667888999999888643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=5.4e-14  Score=126.09  Aligned_cols=247  Identities=14%  Similarity=0.129  Sum_probs=172.8

Q ss_pred             CCCceEecCCCcCcceecccCCC-CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQAL-PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~-~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +++++|+++++ .++.+    |+ ++..+++|++|++++| .+..+++.. ++++++|++|++++| .++.++..     
T Consensus        31 ~~l~~L~Ls~N-~i~~l----~~~~f~~l~~L~~L~l~~n-~~~~i~~~~-f~~l~~L~~L~l~~n-~l~~l~~~-----   97 (305)
T d1xkua_          31 PDTALLDLQNN-KITEI----KDGDFKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKN-QLKELPEK-----   97 (305)
T ss_dssp             TTCCEEECCSS-CCCCB----CTTTTTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCSBCCSS-----
T ss_pred             CCCCEEECcCC-cCCCc----ChhHhhccccccccccccc-cccccchhh-hhCCCccCEecccCC-ccCcCccc-----
Confidence            67999999999 68877    54 5788999999999998 566665543 579999999999999 78877642     


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                             .++.++.|.+.++. +..++.  ........+..++...+......                           
T Consensus        98 -------~~~~l~~L~~~~n~-l~~l~~--~~~~~~~~~~~l~~~~n~~~~~~---------------------------  140 (305)
T d1xkua_          98 -------MPKTLQELRVHENE-ITKVRK--SVFNGLNQMIVVELGTNPLKSSG---------------------------  140 (305)
T ss_dssp             -------CCTTCCEEECCSSC-CCBBCH--HHHTTCTTCCEEECCSSCCCGGG---------------------------
T ss_pred             -------hhhhhhhhhccccc-hhhhhh--hhhhccccccccccccccccccC---------------------------
Confidence                   34678888877665 444433  11223444555555443221110                           


Q ss_pred             CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCe
Q 016694          164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI  243 (384)
Q Consensus       164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  243 (384)
                       ...   .....+++|+.+++.++ .+..++.      ..+++|++|++.++......+..+..++.+++|+++++ .++
T Consensus       141 -~~~---~~~~~l~~L~~l~l~~n-~l~~l~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~  208 (305)
T d1xkua_         141 -IEN---GAFQGMKKLSYIRIADT-NITTIPQ------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SIS  208 (305)
T ss_dssp             -BCT---TGGGGCTTCCEEECCSS-CCCSCCS------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCC
T ss_pred             -CCc---cccccccccCccccccC-CccccCc------ccCCccCEEECCCCcCCCCChhHhhccccccccccccc-ccc
Confidence             000   11125788999999887 4444322      34689999999997766666667788899999999997 476


Q ss_pred             eecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCC-----cccCCCCccEE
Q 016694          244 NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN-----YALEFPSLEHV  318 (384)
Q Consensus       244 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~-----~~~~~~~L~~L  318 (384)
                      ++. +..+.++++|++|++++| .++.++..        ...+++|++|+++++ +++.+....     .....++|+.|
T Consensus       209 ~~~-~~~~~~l~~L~~L~L~~N-~L~~lp~~--------l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L  277 (305)
T d1xkua_         209 AVD-NGSLANTPHLRELHLNNN-KLVKVPGG--------LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV  277 (305)
T ss_dssp             EEC-TTTGGGSTTCCEEECCSS-CCSSCCTT--------TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred             ccc-cccccccccceeeecccc-cccccccc--------cccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEE
Confidence            664 345678899999999996 56655422        223899999999985 687775421     23356899999


Q ss_pred             EeccCC
Q 016694          319 VVRQCP  324 (384)
Q Consensus       319 ~l~~c~  324 (384)
                      ++++++
T Consensus       278 ~L~~N~  283 (305)
T d1xkua_         278 SLFSNP  283 (305)
T ss_dssp             ECCSSS
T ss_pred             ECCCCc
Confidence            999986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.1e-16  Score=138.18  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=39.8

Q ss_pred             CCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccccc
Q 016694           32 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN  111 (384)
Q Consensus        32 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  111 (384)
                      ..+|++|++++| .+.......++.++++|++|++++| .+.+.....     +.    .+++|++|++++|..+++...
T Consensus        45 ~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~-----l~----~~~~L~~L~Ls~c~~itd~~l  113 (284)
T d2astb2          45 PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNT-----LA----KNSNLVRLNLSGCSGFSEFAL  113 (284)
T ss_dssp             CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHH-----HT----TCTTCSEEECTTCBSCCHHHH
T ss_pred             CCCCCEEECCCC-ccCHHHHHHHHHhCCCccccccccc-CCCcHHHHH-----Hh----cCCCCcCcccccccccccccc
Confidence            345666666655 3333223334455566666666655 332211111     01    345555555555544432211


Q ss_pred             CcccccCCCCceeEeeccCCCc
Q 016694          112 FTENIIEMPELRYLAIENCPDM  133 (384)
Q Consensus       112 ~~~~~~~~~~L~~L~l~~c~~l  133 (384)
                       ......+++|++|++++|..+
T Consensus       114 -~~l~~~~~~L~~L~ls~c~~~  134 (284)
T d2astb2         114 -QTLLSSCSRLDELNLSWCFDF  134 (284)
T ss_dssp             -HHHHHHCTTCCEEECCCCTTC
T ss_pred             -chhhHHHHhcccccccccccc
Confidence             011223555555555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.56  E-value=6.7e-13  Score=120.66  Aligned_cols=110  Identities=18%  Similarity=0.161  Sum_probs=76.9

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      .++++|+++++ .+..+    |+.   .++|++|++++| +++.+|.     ...+|++|++.++ .++.++.       
T Consensus        38 ~~l~~LdLs~~-~L~~l----p~~---~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~-------   95 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSL----PEL---PPHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKALSD-------   95 (353)
T ss_dssp             HTCSEEECTTS-CCSCC----CSC---CTTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCCS-------
T ss_pred             cCCCEEEeCCC-CCCCC----CCC---CCCCCEEECCCC-CCccccc-----chhhhhhhhhhhc-ccchhhh-------
Confidence            36889999998 67766    643   578999999977 8887743     3478999999998 7766542       


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-CCCeeEEEec
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-SNSVVHVTTD  147 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~L~~L~i~  147 (384)
                            ..+.|++|+++++. ++.++.    ...+++|++|++.++....... ...+..+.+.
T Consensus        96 ------lp~~L~~L~L~~n~-l~~lp~----~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~  148 (353)
T d1jl5a_          96 ------LPPLLEYLGVSNNQ-LEKLPE----LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG  148 (353)
T ss_dssp             ------CCTTCCEEECCSSC-CSSCCC----CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             ------hccccccccccccc-cccccc----hhhhccceeeccccccccccccccccccchhhc
Confidence                  23469999999876 666764    3568899999988764322211 2344555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.8e-13  Score=118.96  Aligned_cols=194  Identities=15%  Similarity=0.052  Sum_probs=121.1

Q ss_pred             CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694            6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (384)
                      .+.+++-++. .+..+    |+.+.  +++++|+|++| +++.+++.. +.++++|++|++++| .++.++...      
T Consensus        11 ~~~~v~C~~~-~L~~i----P~~lp--~~l~~L~Ls~N-~i~~l~~~~-f~~l~~L~~L~L~~N-~l~~l~~~~------   74 (266)
T d1p9ag_          11 SHLEVNCDKR-NLTAL----PPDLP--KDTTILHLSEN-LLYTFSLAT-LMPYTRLTQLNLDRA-ELTKLQVDG------   74 (266)
T ss_dssp             TCCEEECTTS-CCSSC----CSCCC--TTCCEEECTTS-CCSEEEGGG-GTTCTTCCEEECTTS-CCCEEECCS------
T ss_pred             CCeEEEccCC-CCCee----CcCcC--cCCCEEECcCC-cCCCcCHHH-hhccccccccccccc-ccccccccc------
Confidence            3444455555 45555    65542  58889999887 777775443 568889999999988 787775432      


Q ss_pred             cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCC
Q 016694           86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ  165 (384)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~  165 (384)
                           .+++|++|+++++. ++.++.   ....+++|+.|+++++.... ++.                           
T Consensus        75 -----~l~~L~~L~Ls~N~-l~~~~~---~~~~l~~L~~L~l~~~~~~~-~~~---------------------------  117 (266)
T d1p9ag_          75 -----TLPVLGTLDLSHNQ-LQSLPL---LGQTLPALTVLDVSFNRLTS-LPL---------------------------  117 (266)
T ss_dssp             -----CCTTCCEEECCSSC-CSSCCC---CTTTCTTCCEEECCSSCCCC-CCS---------------------------
T ss_pred             -----cccccccccccccc-cccccc---ccccccccccccccccccce-eec---------------------------
Confidence                 67888899888875 555544   55667888888887764322 110                           


Q ss_pred             cccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCee
Q 016694          166 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLIN  244 (384)
Q Consensus       166 l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~  244 (384)
                           .....+.+++.|+++++ .+..++...   ...+++|+.++++++ .++.++. .+..+++|++|+++++. ++.
T Consensus       118 -----~~~~~l~~l~~L~l~~n-~l~~l~~~~---~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~  186 (266)
T d1p9ag_         118 -----GALRGLGELQELYLKGN-ELKTLPPGL---LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYT  186 (266)
T ss_dssp             -----STTTTCTTCCEEECTTS-CCCCCCTTT---TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred             -----ccccccccccccccccc-ccceecccc---ccccccchhcccccc-cccccCccccccccccceeecccCC-Ccc
Confidence                 00114566777777665 344432221   134667777777765 4555543 34567777777777753 665


Q ss_pred             ecccccccccCcccEEeeccc
Q 016694          245 VLTLSTSESLVNLGRMKIADC  265 (384)
Q Consensus       245 l~~~~~~~~l~~L~~L~l~~c  265 (384)
                      +  +..+..+++|+.|+++++
T Consensus       187 l--p~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         187 I--PKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             C--CTTTTTTCCCSEEECCSC
T ss_pred             c--ChhHCCCCCCCEEEecCC
Confidence            5  334456677777777663

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=2.5e-13  Score=116.31  Aligned_cols=82  Identities=21%  Similarity=0.293  Sum_probs=60.5

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF  109 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  109 (384)
                      ..+.+|+.|++.+| +++++..   ++++++|++|++++| .+..+.+..           .+++++++++.++. ++.+
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l~~---l~~l~~L~~L~ls~n-~i~~~~~l~-----------~l~~l~~l~~~~n~-~~~i  100 (227)
T d1h6ua2          38 ADLDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDN-QITDLAPLK-----------NLTKITELELSGNP-LKNV  100 (227)
T ss_dssp             HHHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGGGT-----------TCCSCCEEECCSCC-CSCC
T ss_pred             HHcCCcCEEECCCC-CCCcchh---HhcCCCCcEeecCCc-eeecccccc-----------cccccccccccccc-cccc
Confidence            46788999999888 6776632   468899999999988 676664422           67888888888775 5555


Q ss_pred             ccCcccccCCCCceeEeeccCCC
Q 016694          110 CNFTENIIEMPELRYLAIENCPD  132 (384)
Q Consensus       110 ~~~~~~~~~~~~L~~L~l~~c~~  132 (384)
                      +.    +..+++|+.+.+++|..
T Consensus       101 ~~----l~~l~~L~~l~l~~~~~  119 (227)
T d1h6ua2         101 SA----IAGLQSIKTLDLTSTQI  119 (227)
T ss_dssp             GG----GTTCTTCCEEECTTSCC
T ss_pred             cc----ccccccccccccccccc
Confidence            43    45688888888887754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=2.4e-13  Score=122.23  Aligned_cols=247  Identities=14%  Similarity=0.070  Sum_probs=150.6

Q ss_pred             CCccEEEeecCCCCccc--CchhHHhcCCCCCEEEEecccCcc-eecccccccccccccCCcccccceeccCcccccccc
Q 016694           33 NNLRHLVVDDCTNMLSA--IPANLIRCLNNLRWLEVRNCDSLE-EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF  109 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~--~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  109 (384)
                      .+++.|+++++ ++.+.  .|. .++++++|++|++++|..+. .+|+...          .+++|++|+++++. +..+
T Consensus        50 ~~v~~L~L~~~-~l~g~~~lp~-~l~~L~~L~~L~Ls~~N~l~g~iP~~i~----------~L~~L~~L~Ls~N~-l~~~  116 (313)
T d1ogqa_          50 YRVNNLDLSGL-NLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIA----------KLTQLHYLYITHTN-VSGA  116 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGG----------GCTTCSEEEEEEEC-CEEE
T ss_pred             EEEEEEECCCC-CCCCCCCCCh-HHhcCccccccccccccccccccccccc----------cccccchhhhcccc-cccc
Confidence            36889999988 55542  123 36799999999999865666 4544332          78899999999887 4433


Q ss_pred             ccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694          110 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK  189 (384)
Q Consensus       110 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~  189 (384)
                      +.  .....+++|+.+++..+.....+|                                 ..++.+++|+.++++++.-
T Consensus       117 ~~--~~~~~~~~L~~l~l~~N~~~~~~p---------------------------------~~l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_         117 IP--DFLSQIKTLVTLDFSYNALSGTLP---------------------------------PSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             CC--GGGGGCTTCCEEECCSSEEESCCC---------------------------------GGGGGCTTCCEEECCSSCC
T ss_pred             cc--ccccchhhhcccccccccccccCc---------------------------------hhhccCcccceeecccccc
Confidence            32  245667888888888764332221                                 1123677788888877632


Q ss_pred             cccccccccccccccccc-cEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccc
Q 016694          190 VQHLWKENDESNKAFANL-IRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI  268 (384)
Q Consensus       190 l~~l~~~~~~~~~~~~~L-~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l  268 (384)
                      ...++..    ...+..+ +.+.++++..-...|..+... ....+++.++.....+  +.....+++|+.+++.++. +
T Consensus       162 ~~~ip~~----~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~-l  233 (313)
T d1ogqa_         162 SGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNS-L  233 (313)
T ss_dssp             EEECCGG----GGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSE-E
T ss_pred             ccccccc----ccccccccccccccccccccccccccccc-cccccccccccccccc--ccccccccccccccccccc-c
Confidence            2222221    2334443 666666643222333333333 3445666665432222  4455677888888887754 3


Q ss_pred             cEecccccCccccceeeecccceeecccCCCCc-eecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694          269 EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT-SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE  347 (384)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~  347 (384)
                      ...+.        ....+++|+.|+++++ +++ .++.  .+..+++|++|+++++..-..+|. ...+++|+.+++.+|
T Consensus       234 ~~~~~--------~~~~~~~L~~L~Ls~N-~l~g~iP~--~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         234 AFDLG--------KVGLSKNLNGLDLRNN-RIYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN  301 (313)
T ss_dssp             CCBGG--------GCCCCTTCCEEECCSS-CCEECCCG--GGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSS
T ss_pred             ccccc--------ccccccccccccCccC-eecccCCh--HHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCC
Confidence            22221        1223678888888775 444 4433  367788999999988754336774 355778888888887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-14  Score=129.54  Aligned_cols=216  Identities=16%  Similarity=0.118  Sum_probs=140.5

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      ...+|++|+++++. +.....  ..-+..+++|++|++++| .+.+..... +.++++|++|++++|..+++..-.    
T Consensus        44 ~~~~L~~LdLs~~~-i~~~~l--~~l~~~c~~L~~L~L~~~-~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~----  114 (284)
T d2astb2          44 SPFRVQHMDLSNSV-IEVSTL--HGILSQCSKLQNLSLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQ----  114 (284)
T ss_dssp             CCBCCCEEECTTCE-ECHHHH--HHHHTTBCCCSEEECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHH----
T ss_pred             cCCCCCEEECCCCc-cCHHHH--HHHHHhCCCccccccccc-CCCcHHHHH-HhcCCCCcCccccccccccccccc----
Confidence            34689999999884 432110  122467899999999999 566543333 568899999999999777532110    


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC-CcccccCCCeeEEEecCCCCcccccccccc
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP-DMETFISNSVVHVTTDNKEPEKLTSEENFF  161 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~  161 (384)
                      ....    .+++|++|++++|..+++-.........+++|+.|++++|. .+++.                         
T Consensus       115 ~l~~----~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~-------------------------  165 (284)
T d2astb2         115 TLLS----SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-------------------------  165 (284)
T ss_dssp             HHHH----HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-------------------------
T ss_pred             hhhH----HHHhccccccccccccccccchhhhcccccccchhhhcccccccccc-------------------------
Confidence            0112    67899999999997665321100112236789999999874 34322                         


Q ss_pred             ccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeecCC
Q 016694          162 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       162 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~  240 (384)
                         ++..++.   .+++|++|++++|..+++-.   +.....+++|++|++++|..++.- ...+..+++|+.|++++| 
T Consensus       166 ---~l~~l~~---~~~~L~~L~L~~~~~itd~~---~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-  235 (284)
T d2astb2         166 ---DLSTLVR---RCPNLVHLDLSDSVMLKNDC---FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  235 (284)
T ss_dssp             ---HHHHHHH---HCTTCSEEECTTCTTCCGGG---GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             ---ccccccc---ccccccccccccccCCCchh---hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-
Confidence               1222222   58899999999987776532   223467889999999999877632 234678899999999998 


Q ss_pred             CCeeecccccccccCcccEEeecccccccEe
Q 016694          241 GLINVLTLSTSESLVNLGRMKIADCKMIEQI  271 (384)
Q Consensus       241 ~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~  271 (384)
                       +.+.........+|+|+.    +|..+..+
T Consensus       236 -~~d~~l~~l~~~lp~L~i----~~~~ls~~  261 (284)
T d2astb2         236 -VPDGTLQLLKEALPHLQI----NCSHFTTI  261 (284)
T ss_dssp             -SCTTCHHHHHHHSTTSEE----SCCCSCCT
T ss_pred             -CCHHHHHHHHHhCccccc----cCccCCCC
Confidence             333222444556777763    34555433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.4e-13  Score=115.52  Aligned_cols=176  Identities=18%  Similarity=0.147  Sum_probs=132.2

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      +++++|+++++ .+..+-   +.++..+++|++|++++| +++.+++.   +.+++|++|++++| .+...+....    
T Consensus        31 ~~l~~L~Ls~N-~i~~l~---~~~f~~l~~L~~L~L~~N-~l~~l~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~----   97 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFS---LATLMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQSLPLLGQ----   97 (266)
T ss_dssp             TTCCEEECTTS-CCSEEE---GGGGTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSSCCCCTT----
T ss_pred             cCCCEEECcCC-cCCCcC---HHHhhccccccccccccc-cccccccc---cccccccccccccc-cccccccccc----
Confidence            47999999999 677761   245788999999999998 78877543   58899999999999 7776654332    


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccC
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTD  164 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~  164 (384)
                            .+++|+.|+++++. ...++.  .....+++++.|++.++ .++.++.                          
T Consensus        98 ------~l~~L~~L~l~~~~-~~~~~~--~~~~~l~~l~~L~l~~n-~l~~l~~--------------------------  141 (266)
T d1p9ag_          98 ------TLPALTVLDVSFNR-LTSLPL--GALRGLGELQELYLKGN-ELKTLPP--------------------------  141 (266)
T ss_dssp             ------TCTTCCEEECCSSC-CCCCCS--STTTTCTTCCEEECTTS-CCCCCCT--------------------------
T ss_pred             ------cccccccccccccc-cceeec--ccccccccccccccccc-ccceecc--------------------------
Confidence                  78899999999887 444443  24456788888888875 3332210                          


Q ss_pred             CcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694          165 QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH  240 (384)
Q Consensus       165 ~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  240 (384)
                         ..   ...+++|+.++++++ ++..+....   ...+++|++|+++++ .++.+|..+..+++|+.|++++.+
T Consensus       142 ---~~---~~~l~~l~~l~l~~N-~l~~~~~~~---~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         142 ---GL---LTPTPKLEKLSLANN-NLTELPAGL---LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ---TT---TTTCTTCCEEECTTS-CCSCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ---cc---ccccccchhcccccc-cccccCccc---cccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence               01   115788999999987 566654332   256899999999996 588999988899999999999865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-12  Score=113.51  Aligned_cols=84  Identities=17%  Similarity=0.181  Sum_probs=44.8

Q ss_pred             CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694           33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF  112 (384)
Q Consensus        33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  112 (384)
                      +++++|+|++| +++.+++.+ +.++++|++|+++++ .+..++.....         ..+.++.+.+.....+..++. 
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~ls~n-~l~~i~~~~~~---------~~~~~~~l~~~~~~~~~~l~~-   98 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAAS-FRACRNLTILWLHSN-VLARIDAAAFT---------GLALLEQLDLSDNAQLRSVDP-   98 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTTT---------TCTTCCEEECCSCTTCCCCCT-
T ss_pred             CCCCEEECcCC-cCCCCCHHH-hhccccccccccccc-ccccccccccc---------ccccccccccccccccccccc-
Confidence            45666666665 556554433 346666666666666 55555443321         344555555544444444433 


Q ss_pred             cccccCCCCceeEeeccC
Q 016694          113 TENIIEMPELRYLAIENC  130 (384)
Q Consensus       113 ~~~~~~~~~L~~L~l~~c  130 (384)
                       .....+++|+.|++..+
T Consensus        99 -~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          99 -ATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             -TTTTTCTTCCEEECTTS
T ss_pred             -hhhcccccCCEEecCCc
Confidence             12344556666666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.4e-12  Score=114.01  Aligned_cols=203  Identities=16%  Similarity=0.107  Sum_probs=145.1

Q ss_pred             CCCceEecCCCcCcceecccCC-CCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQA-LPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p-~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +.+++|+|+++ .++.+    | .++..+++|++|+++++ ++..+++. ....+..++.+.+..+..+..+++....  
T Consensus        32 ~~~~~L~Ls~N-~i~~i----~~~~f~~l~~L~~L~ls~n-~l~~i~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~~~--  102 (284)
T d1ozna_          32 AASQRIFLHGN-RISHV----PAASFRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFH--  102 (284)
T ss_dssp             TTCSEEECTTS-CCCEE----CTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTT--
T ss_pred             CCCCEEECcCC-cCCCC----CHHHhhccccccccccccc-cccccccc-cccccccccccccccccccccccchhhc--
Confidence            46899999999 68877    4 35788999999999988 77777554 3567899999998877678877665543  


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT  163 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  163 (384)
                             .+++|++|+++++. +..++.  ......++|+.++++++ .++.++.                         
T Consensus       103 -------~l~~L~~L~l~~n~-~~~~~~--~~~~~~~~L~~l~l~~N-~l~~i~~-------------------------  146 (284)
T d1ozna_         103 -------GLGRLHTLHLDRCG-LQELGP--GLFRGLAALQYLYLQDN-ALQALPD-------------------------  146 (284)
T ss_dssp             -------TCTTCCEEECTTSC-CCCCCT--TTTTTCTTCCEEECCSS-CCCCCCT-------------------------
T ss_pred             -------ccccCCEEecCCcc-cccccc--cccchhcccchhhhccc-cccccCh-------------------------
Confidence                   67899999999887 444433  24455778888888874 3443220                         


Q ss_pred             CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCe
Q 016694          164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI  243 (384)
Q Consensus       164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  243 (384)
                          ..   +..+++|+.|+++++ +++.+....   ...+++|+++.+.++....-.|..+..+++|++|+++++. +.
T Consensus       147 ----~~---f~~~~~L~~L~l~~N-~l~~l~~~~---f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~  214 (284)
T d1ozna_         147 ----DT---FRDLGNLTHLFLHGN-RISSVPERA---FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LS  214 (284)
T ss_dssp             ----TT---TTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CS
T ss_pred             ----hH---hccccchhhcccccC-cccccchhh---hccccccchhhhhhccccccChhHhhhhhhcccccccccc-cc
Confidence                01   125778889998887 566654432   2567889999998875444445667788899999998864 55


Q ss_pred             eecccccccccCcccEEeeccc
Q 016694          244 NVLTLSTSESLVNLGRMKIADC  265 (384)
Q Consensus       244 ~l~~~~~~~~l~~L~~L~l~~c  265 (384)
                      .++ +..+..+++|++|+++++
T Consensus       215 ~~~-~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         215 ALP-TEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCC-HHHHTTCTTCCEEECCSS
T ss_pred             ccc-ccccccccccCEEEecCC
Confidence            542 345667888999988874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.9e-12  Score=110.69  Aligned_cols=209  Identities=14%  Similarity=0.209  Sum_probs=130.5

Q ss_pred             CCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccccc
Q 016694           32 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN  111 (384)
Q Consensus        32 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  111 (384)
                      +.++..+++... .+++...   ...+.+|++|++.+| .++++.+..           .+++|++|+++++. ++.+..
T Consensus        18 l~~~~~~~l~~~-~~~d~~~---~~~l~~L~~L~l~~~-~i~~l~~l~-----------~l~~L~~L~ls~n~-i~~~~~   80 (227)
T d1h6ua2          18 LANAIKIAAGKS-NVTDTVT---QADLDGITTLSAFGT-GVTTIEGVQ-----------YLNNLIGLELKDNQ-ITDLAP   80 (227)
T ss_dssp             HHHHHHHHTTCS-STTSEEC---HHHHHTCCEEECTTS-CCCCCTTGG-----------GCTTCCEEECCSSC-CCCCGG
T ss_pred             HHHHHHHHhCCC-CcCCcCC---HHHcCCcCEEECCCC-CCCcchhHh-----------cCCCCcEeecCCce-eecccc
Confidence            344444455443 4444433   356788999999988 777764432           78889999998876 444432


Q ss_pred             CcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccc
Q 016694          112 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ  191 (384)
Q Consensus       112 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~  191 (384)
                          ...+++|+.+++.++. ++.++                           .       .+.+++|+.++++++... 
T Consensus        81 ----l~~l~~l~~l~~~~n~-~~~i~---------------------------~-------l~~l~~L~~l~l~~~~~~-  120 (227)
T d1h6ua2          81 ----LKNLTKITELELSGNP-LKNVS---------------------------A-------IAGLQSIKTLDLTSTQIT-  120 (227)
T ss_dssp             ----GTTCCSCCEEECCSCC-CSCCG---------------------------G-------GTTCTTCCEEECTTSCCC-
T ss_pred             ----cccccccccccccccc-ccccc---------------------------c-------cccccccccccccccccc-
Confidence                4668888888887763 22111                           1       115777788877766322 


Q ss_pred             cccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEe
Q 016694          192 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQI  271 (384)
Q Consensus       192 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~  271 (384)
                      .+     ......+.++.+.+.++.. ... ..+..+++|+.|.+.++. +.+.   ..+.++++|++|++++| .++++
T Consensus       121 ~~-----~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~L~~L~l~~n~-~~~~---~~l~~l~~L~~L~Ls~n-~l~~l  188 (227)
T d1h6ua2         121 DV-----TPLAGLSNLQVLYLDLNQI-TNI-SPLAGLTNLQYLSIGNAQ-VSDL---TPLANLSKLTTLKADDN-KISDI  188 (227)
T ss_dssp             CC-----GGGTTCTTCCEEECCSSCC-CCC-GGGGGCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSS-CCCCC
T ss_pred             cc-----chhccccchhhhhchhhhh-chh-hhhccccccccccccccc-cccc---hhhcccccceecccCCC-ccCCC
Confidence            11     1124456777777766543 222 234567788888887764 4332   22467788888888875 45544


Q ss_pred             cccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 016694          272 IQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ  322 (384)
Q Consensus       272 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~  322 (384)
                      ..         ...+++|++|++++| ++++++.   +.++++|++|++++
T Consensus       189 ~~---------l~~l~~L~~L~Ls~N-~lt~i~~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 SP---------LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTN  226 (227)
T ss_dssp             GG---------GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEE
T ss_pred             hh---------hcCCCCCCEEECcCC-cCCCCcc---cccCCCCCEEEeeC
Confidence            31         123788888888887 6777753   56788888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.1e-12  Score=110.91  Aligned_cols=166  Identities=20%  Similarity=0.264  Sum_probs=114.3

Q ss_pred             CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC  110 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  110 (384)
                      .+.+|++|++++| .++++..   ++.+++|++|++++| .++++++..           .+++|++|+++++. +++++
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~~---l~~l~~L~~L~L~~n-~i~~l~~~~-----------~l~~L~~L~l~~n~-i~~l~  106 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKPLA-----------NLKNLGWLFLDENK-VKDLS  106 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGGGT-----------TCTTCCEEECCSSC-CCCGG
T ss_pred             HhcCccEEECcCC-CCCCchh---HhhCCCCCEEeCCCc-cccCccccc-----------cCcccccccccccc-ccccc
Confidence            4678888998887 6666543   467899999999988 777765433           67889999988875 66665


Q ss_pred             cCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccc
Q 016694          111 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV  190 (384)
Q Consensus       111 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l  190 (384)
                      .    ...+++|+.|++.++.... ++                           .       ...+++++.+++.++ .+
T Consensus       107 ~----l~~l~~L~~L~l~~~~~~~-~~---------------------------~-------l~~l~~l~~l~~~~n-~l  146 (210)
T d1h6ta2         107 S----LKDLKKLKSLSLEHNGISD-IN---------------------------G-------LVHLPQLESLYLGNN-KI  146 (210)
T ss_dssp             G----GTTCTTCCEEECTTSCCCC-CG---------------------------G-------GGGCTTCCEEECCSS-CC
T ss_pred             c----ccccccccccccccccccc-cc---------------------------c-------ccccccccccccccc-cc
Confidence            3    4568888888888864321 10                           1       115677788877765 33


Q ss_pred             ccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecc
Q 016694          191 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD  264 (384)
Q Consensus       191 ~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~  264 (384)
                      ....     ....+++|++++++++ .++.++ .+..+++|++|+++++ .++++  + .+.++++|+.|++++
T Consensus       147 ~~~~-----~~~~l~~L~~l~l~~n-~l~~i~-~l~~l~~L~~L~Ls~N-~i~~l--~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         147 TDIT-----VLSRLTKLDTLSLEDN-QISDIV-PLAGLTKLQNLYLSKN-HISDL--R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCG-----GGGGCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBC--G-GGTTCTTCSEEEEEE
T ss_pred             cccc-----cccccccccccccccc-cccccc-cccCCCCCCEEECCCC-CCCCC--h-hhcCCCCCCEEEccC
Confidence            3321     1356778888888876 455553 3677888888888887 46665  2 356788888888864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.37  E-value=4.7e-11  Score=108.15  Aligned_cols=272  Identities=18%  Similarity=0.131  Sum_probs=160.1

Q ss_pred             CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      .++|++|+++++ .++++    |+.   +.+|+.|++.++ +++.++..     -+.|++|++++| .+..++...    
T Consensus        57 ~~~L~~L~Ls~N-~l~~l----p~~---~~~L~~L~l~~n-~l~~l~~l-----p~~L~~L~L~~n-~l~~lp~~~----  117 (353)
T d1jl5a_          57 PPHLESLVASCN-SLTEL----PEL---PQSLKSLLVDNN-NLKALSDL-----PPLLEYLGVSNN-QLEKLPELQ----  117 (353)
T ss_dssp             CTTCSEEECCSS-CCSSC----CCC---CTTCCEEECCSS-CCSCCCSC-----CTTCCEEECCSS-CCSSCCCCT----
T ss_pred             CCCCCEEECCCC-CCccc----ccc---hhhhhhhhhhhc-ccchhhhh-----cccccccccccc-ccccccchh----
Confidence            478999999988 78776    654   568999999987 56655321     156999999999 788776432    


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCcccccccc-
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEEN-  159 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~~~-  159 (384)
                             .+++|++|++.++. +...+.      ..+.+..+.+..+.......   .+.++.+.+..+.....+.... 
T Consensus       118 -------~l~~L~~L~l~~~~-~~~~~~------~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~  183 (353)
T d1jl5a_         118 -------NSSFLKIIDVDNNS-LKKLPD------LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS  183 (353)
T ss_dssp             -------TCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             -------hhccceeecccccc-cccccc------ccccccchhhccccccccccccccccceeccccccccccccccccc
Confidence                   67899999998776 333332      23455556555443322211   3345666666554333221100 


Q ss_pred             ----ccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcc---------
Q 016694          160 ----FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW---------  226 (384)
Q Consensus       160 ----~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~---------  226 (384)
                          ......+. .+...+.++.|+.++++++. ...++       ....++..+.+.++. +...+....         
T Consensus       184 ~~~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~-~~~~~-------~~~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~  253 (353)
T d1jl5a_         184 LESIVAGNNILE-ELPELQNLPFLTTIYADNNL-LKTLP-------DLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSE  253 (353)
T ss_dssp             CCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC-CSSCC-------SCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cccccccccccc-cccccccccccccccccccc-ccccc-------ccccccccccccccc-cccccccccccccccccc
Confidence                01111111 12223467888888888763 22221       223445555555432 111111000         


Q ss_pred             -cCC-------CcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCC
Q 016694          227 -HLE-------NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP  298 (384)
Q Consensus       227 -~~~-------~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  298 (384)
                       .+.       .....++..+ .+     ......+++|++|++++| .+.+++..           +++|++|+++++ 
T Consensus       254 ~~~~~l~~l~~~~~~~~~~~~-~~-----~~~~~~~~~L~~L~Ls~N-~l~~lp~~-----------~~~L~~L~L~~N-  314 (353)
T d1jl5a_         254 NIFSGLSELPPNLYYLNASSN-EI-----RSLCDLPPSLEELNVSNN-KLIELPAL-----------PPRLERLIASFN-  314 (353)
T ss_dssp             SCCSEESCCCTTCCEEECCSS-CC-----SEECCCCTTCCEEECCSS-CCSCCCCC-----------CTTCCEEECCSS-
T ss_pred             ccccccccccchhcccccccC-cc-----ccccccCCCCCEEECCCC-ccCccccc-----------cCCCCEEECCCC-
Confidence             001       1112222211 11     122344689999999986 47666544           899999999876 


Q ss_pred             CCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCC
Q 016694          299 SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTE  346 (384)
Q Consensus       299 ~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~  346 (384)
                      ++++++.     .+++|++|++++|+ ++.+|..   ..+|+.+++.+
T Consensus       315 ~L~~l~~-----~~~~L~~L~L~~N~-L~~lp~~---~~~L~~L~~~~  353 (353)
T d1jl5a_         315 HLAEVPE-----LPQNLKQLHVEYNP-LREFPDI---PESVEDLRMNS  353 (353)
T ss_dssp             CCSCCCC-----CCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCC
T ss_pred             cCCcccc-----ccCCCCEEECcCCc-CCCCCcc---ccccCeeECcC
Confidence            6777643     35789999999996 8899863   45788888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=5.4e-12  Score=105.58  Aligned_cols=163  Identities=20%  Similarity=0.257  Sum_probs=111.3

Q ss_pred             CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694           30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF  109 (384)
Q Consensus        30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  109 (384)
                      ..+.++++|++++| +++++..   ++.+++|++|++++| .++++++..           .+++|++|+++++. ...+
T Consensus        37 ~~l~~l~~L~l~~~-~i~~l~~---l~~l~nL~~L~Ls~N-~l~~~~~l~-----------~l~~L~~L~l~~n~-~~~~   99 (199)
T d2omxa2          37 TDLDQVTTLQADRL-GIKSIDG---VEYLNNLTQINFSNN-QLTDITPLK-----------NLTKLVDILMNNNQ-IADI   99 (199)
T ss_dssp             HHHTTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGGGT-----------TCTTCCEEECCSSC-CCCC
T ss_pred             HHhcCCCEEECCCC-CCCCccc---cccCCCcCcCccccc-cccCccccc-----------CCcccccccccccc-cccc
Confidence            34678888888887 6666532   467888888888888 777765422           67888888888776 4444


Q ss_pred             ccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694          110 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK  189 (384)
Q Consensus       110 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~  189 (384)
                      +.    ...+++|+.|++.++......                            .       .+.+++|+.|+++++ .
T Consensus       100 ~~----l~~l~~L~~L~l~~~~~~~~~----------------------------~-------~~~l~~L~~L~l~~n-~  139 (199)
T d2omxa2         100 TP----LANLTNLTGLTLFNNQITDID----------------------------P-------LKNLTNLNRLELSSN-T  139 (199)
T ss_dssp             GG----GTTCTTCSEEECCSSCCCCCG----------------------------G-------GTTCTTCSEEECCSS-C
T ss_pred             cc----ccccccccccccccccccccc----------------------------c-------cchhhhhHHhhhhhh-h
Confidence            32    456788888888876433211                            1       115778888888876 3


Q ss_pred             cccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEE
Q 016694          190 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRM  260 (384)
Q Consensus       190 l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L  260 (384)
                      +..+.     ....+++|++|++.++ .++.++ .+..+++|++|+++++ .+++++   .+..+++|++|
T Consensus       140 l~~~~-----~l~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~---~l~~L~~L~~L  199 (199)
T d2omxa2         140 ISDIS-----ALSGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLDISSN-KVSDIS---VLAKLTNLESL  199 (199)
T ss_dssp             CCCCG-----GGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEE
T ss_pred             hcccc-----cccccccccccccccc-cccCCc-cccCCCCCCEEECCCC-CCCCCc---cccCCCCCCcC
Confidence            44331     2356788888888876 466663 4678889999999987 477652   24577888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=6.2e-12  Score=106.13  Aligned_cols=166  Identities=16%  Similarity=0.243  Sum_probs=103.5

Q ss_pred             cCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccc
Q 016694           57 CLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF  136 (384)
Q Consensus        57 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  136 (384)
                      .+.+|++|++++| .++.+.+..           .+++|++|+++++. ++.++.    ...+++|+.|+++++ .++.+
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~~l~-----------~l~~L~~L~L~~n~-i~~l~~----~~~l~~L~~L~l~~n-~i~~l  105 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQGIQ-----------YLPNVTKLFLNGNK-LTDIKP----LANLKNLGWLFLDEN-KVKDL  105 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCTTGG-----------GCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSS-CCCCG
T ss_pred             HhcCccEEECcCC-CCCCchhHh-----------hCCCCCEEeCCCcc-ccCccc----cccCccccccccccc-ccccc
Confidence            5677888888887 666664433           67788888888775 555543    356777888888775 34322


Q ss_pred             cCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCc
Q 016694          137 ISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS  216 (384)
Q Consensus       137 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~  216 (384)
                      +                           .       .+.+++|+.|+++++. ...+     +....+++++.++++++.
T Consensus       106 ~---------------------------~-------l~~l~~L~~L~l~~~~-~~~~-----~~l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2         106 S---------------------------S-------LKDLKKLKSLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNK  145 (210)
T ss_dssp             G---------------------------G-------GTTCTTCCEEECTTSC-CCCC-----GGGGGCTTCCEEECCSSC
T ss_pred             c---------------------------c-------cccccccccccccccc-cccc-----cccccccccccccccccc
Confidence            1                           1       1157778888877763 2222     123566778888877653


Q ss_pred             ccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeeccc
Q 016694          217 KLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDC  296 (384)
Q Consensus       217 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  296 (384)
                       ++.. .....+++|+.++++++. +.++.   .+..+++|++|++++| .++++..         ...+++|++|+|++
T Consensus       146 -l~~~-~~~~~l~~L~~l~l~~n~-l~~i~---~l~~l~~L~~L~Ls~N-~i~~l~~---------l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         146 -ITDI-TVLSRLTKLDTLSLEDNQ-ISDIV---PLAGLTKLQNLYLSKN-HISDLRA---------LAGLKNLDVLELFS  209 (210)
T ss_dssp             -CCCC-GGGGGCTTCSEEECCSSC-CCCCG---GGTTCTTCCEEECCSS-CCCBCGG---------GTTCTTCSEEEEEE
T ss_pred             -cccc-cccccccccccccccccc-ccccc---cccCCCCCCEEECCCC-CCCCChh---------hcCCCCCCEEEccC
Confidence             4443 334567788888888763 55542   2456788888888875 4554421         11267788887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=1.3e-11  Score=103.11  Aligned_cols=171  Identities=16%  Similarity=0.233  Sum_probs=112.6

Q ss_pred             CCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccccc
Q 016694           32 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN  111 (384)
Q Consensus        32 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  111 (384)
                      +.+.....+..+ .+++....   ..++++++|++++| .+.++.+..           .+++|++|+++++. ++.++.
T Consensus        17 l~~~i~~~l~~~-~~~~~~~~---~~l~~l~~L~l~~~-~i~~l~~l~-----------~l~nL~~L~Ls~N~-l~~~~~   79 (199)
T d2omxa2          17 LAEKMKTVLGKT-NVTDTVSQ---TDLDQVTTLQADRL-GIKSIDGVE-----------YLNNLTQINFSNNQ-LTDITP   79 (199)
T ss_dssp             HHHHHHHHTTCS-STTSEECH---HHHTTCCEEECTTS-CCCCCTTGG-----------GCTTCCEEECCSSC-CCCCGG
T ss_pred             HHHHHHHHhCCC-CCCCccCH---HHhcCCCEEECCCC-CCCCccccc-----------cCCCcCcCcccccc-ccCccc
Confidence            333334444444 44444332   36688899999988 777664433           67889999998875 665543


Q ss_pred             CcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccc
Q 016694          112 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ  191 (384)
Q Consensus       112 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~  191 (384)
                          +..+++|++|+++++.... ++                           .       .+.+++|+.|+++++....
T Consensus        80 ----l~~l~~L~~L~l~~n~~~~-~~---------------------------~-------l~~l~~L~~L~l~~~~~~~  120 (199)
T d2omxa2          80 ----LKNLTKLVDILMNNNQIAD-IT---------------------------P-------LANLTNLTGLTLFNNQITD  120 (199)
T ss_dssp             ----GTTCTTCCEEECCSSCCCC-CG---------------------------G-------GTTCTTCSEEECCSSCCCC
T ss_pred             ----ccCCccccccccccccccc-cc---------------------------c-------ccccccccccccccccccc
Confidence                5678888888888763221 10                           1       1267888888888764322


Q ss_pred             cccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEe
Q 016694          192 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQI  271 (384)
Q Consensus       192 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~  271 (384)
                       +     .....+++|+.|+++++. +..++ .+..+++|+.|++.++ .++++.   .+.++++|++|+++++ .++++
T Consensus       121 -~-----~~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n-~l~~l~---~l~~l~~L~~L~ls~N-~i~~i  187 (199)
T d2omxa2         121 -I-----DPLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSN-QVTDLK---PLANLTTLERLDISSN-KVSDI  187 (199)
T ss_dssp             -C-----GGGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSS-CCCCCG---GGTTCTTCCEEECCSS-CCCCC
T ss_pred             -c-----cccchhhhhHHhhhhhhh-hcccc-cccccccccccccccc-cccCCc---cccCCCCCCEEECCCC-CCCCC
Confidence             1     113567889999998863 55553 4677888999999886 466552   2567889999999886 46554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.8e-11  Score=102.68  Aligned_cols=102  Identities=19%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcce-eccccccccccc
Q 016694            8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE-VLHLEELNADKE   86 (384)
Q Consensus         8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~   86 (384)
                      ++++.++. ++..+    |+.+  .+++++|+++++ +++.+++.. +.++++|++|++++| .+.. +++..+.     
T Consensus        11 ~~i~c~~~-~l~~i----P~~l--~~~l~~L~Ls~n-~i~~l~~~~-f~~l~~L~~L~ls~n-~~~~~i~~~~f~-----   75 (242)
T d1xwdc1          11 RVFLCQES-KVTEI----PSDL--PRNAIELRFVLT-KLRVIQKGA-FSGFGDLEKIEISQN-DVLEVIEADVFS-----   75 (242)
T ss_dssp             SEEEEESC-SCSSC----CSCS--CSCCSEEEEESC-CCCEECTTT-TTTCTTCCEEEEESC-TTCCEECSSSEE-----
T ss_pred             CEEEEeCC-CCCCc----CCCC--CCCCCEEECcCC-cCCccChhH-hhccchhhhhhhccc-cccceeeccccc-----
Confidence            34444443 34454    5443  357888888877 566665433 457788888888887 4433 3322221     


Q ss_pred             ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                          .+++++++.+..+..+..++.  .....+++|+++++.++
T Consensus        76 ----~l~~l~~l~~~~~n~l~~~~~--~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          76 ----NLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             ----SCTTCCEEEEECCTTCCEECT--TSEECCTTCCEEEEESC
T ss_pred             ----ccccccccccccccccccccc--ccccccccccccccchh
Confidence                456677777666555555543  23455777777777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.6e-11  Score=102.23  Aligned_cols=91  Identities=16%  Similarity=0.176  Sum_probs=68.8

Q ss_pred             CCCceEecCCCcCcceecccCCC-CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQAL-PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~-~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +++++|+++++ .+..+    |+ ++..+++|++|++++|.....+ +...+.++++++++.+..+..+...++....  
T Consensus        29 ~~l~~L~Ls~n-~i~~l----~~~~f~~l~~L~~L~ls~n~~~~~i-~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~--  100 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVI----QKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINPEAFQ--  100 (242)
T ss_dssp             SCCSEEEEESC-CCCEE----CTTTTTTCTTCCEEEEESCTTCCEE-CSSSEESCTTCCEEEEECCTTCCEECTTSEE--
T ss_pred             CCCCEEECcCC-cCCcc----ChhHhhccchhhhhhhcccccccee-ecccccccccccccccccccccccccccccc--
Confidence            58999999999 68876    44 4678999999999998544433 3333568999999999887677777665432  


Q ss_pred             cccccCCcccccceeccCcccccccccc
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCN  111 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~  111 (384)
                             .+++|+++++.++. ++.++.
T Consensus       101 -------~l~~L~~l~l~~~~-l~~~~~  120 (242)
T d1xwdc1         101 -------NLPNLQYLLISNTG-IKHLPD  120 (242)
T ss_dssp             -------CCTTCCEEEEESCC-CCSCCC
T ss_pred             -------ccccccccccchhh-hccccc
Confidence                   78899999998875 554443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.3e-10  Score=93.49  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+.++|+|+++++ .+..+    +.....+++|++|++++| .+..++.   +..+++|++|++++| .+..+++.... 
T Consensus        16 n~~~lr~L~L~~n-~I~~i----~~~~~~l~~L~~L~Ls~N-~i~~l~~---~~~l~~L~~L~ls~N-~i~~l~~~~~~-   84 (162)
T d1a9na_          16 NAVRDRELDLRGY-KIPVI----ENLGATLDQFDAIDFSDN-EIRKLDG---FPLLRRLKTLLVNNN-RICRIGEGLDQ-   84 (162)
T ss_dssp             CTTSCEEEECTTS-CCCSC----CCGGGGTTCCSEEECCSS-CCCEECC---CCCCSSCCEEECCSS-CCCEECSCHHH-
T ss_pred             CcCcCcEEECCCC-CCCcc----CccccccccCCEEECCCC-CCCccCC---cccCcchhhhhcccc-cccCCCccccc-
Confidence            4556788888887 56665    333356778888888887 6666533   357788888888888 77777654322 


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                              .+++|++|++.++. ++.++. ......+++|++|++.+|+
T Consensus        85 --------~l~~L~~L~L~~N~-i~~~~~-l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          85 --------ALPDLTELILTNNS-LVELGD-LDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             --------HCTTCCEEECCSCC-CCCGGG-GGGGGGCTTCCEEECCSSG
T ss_pred             --------cccccccceecccc-cccccc-ccccccccccchhhcCCCc
Confidence                    57788888887775 444443 1234567778888777764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=1.2e-09  Score=83.41  Aligned_cols=100  Identities=23%  Similarity=0.330  Sum_probs=80.2

Q ss_pred             ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694            8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   87 (384)
                      |+|+++++ .+..+    + .+..+++|++|++++| .++.+++.  ++.+++|++|++++| .++.+++..        
T Consensus         1 R~L~Ls~n-~l~~l----~-~l~~l~~L~~L~ls~N-~l~~lp~~--~~~l~~L~~L~l~~N-~i~~l~~~~--------   62 (124)
T d1dcea3           1 RVLHLAHK-DLTVL----C-HLEQLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASDN-ALENVDGVA--------   62 (124)
T ss_dssp             SEEECTTS-CCSSC----C-CGGGGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCGGGT--------
T ss_pred             CEEEcCCC-CCCCC----c-ccccCCCCCEEECCCC-ccCcchhh--hhhhhcccccccccc-cccccCccc--------
Confidence            68999999 67664    3 4788999999999998 78887543  578999999999999 888875422        


Q ss_pred             cCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694           88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                         .+++|++|+++++. ++.++. ......+++|+.|++++.
T Consensus        63 ---~l~~L~~L~l~~N~-i~~~~~-~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          63 ---NLPRLQELLLCNNR-LQQSAA-IQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             ---TCSSCCEEECCSSC-CCSSST-TGGGGGCTTCCEEECTTS
T ss_pred             ---cccccCeEECCCCc-cCCCCC-chhhcCCCCCCEEECCCC
Confidence               78999999999886 666654 234677899999999885

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.3e-09  Score=85.02  Aligned_cols=84  Identities=13%  Similarity=0.100  Sum_probs=59.1

Q ss_pred             CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694           29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR  108 (384)
Q Consensus        29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  108 (384)
                      +.+..+||.|++++| +++.++..  ...+++|++|++++| .++.+++-.           .+++|++|+++++. ++.
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~--~~~l~~L~~L~Ls~N-~i~~l~~~~-----------~l~~L~~L~ls~N~-i~~   77 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENL--GATLDQFDAIDFSDN-EIRKLDGFP-----------LLRRLKTLLVNNNR-ICR   77 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCG--GGGTTCCSEEECCSS-CCCEECCCC-----------CCSSCCEEECCSSC-CCE
T ss_pred             ccCcCcCcEEECCCC-CCCccCcc--ccccccCCEEECCCC-CCCccCCcc-----------cCcchhhhhccccc-ccC
Confidence            345668889999988 67777432  457888999999998 787774322           67788888888876 666


Q ss_pred             cccCcccccCCCCceeEeeccC
Q 016694          109 FCNFTENIIEMPELRYLAIENC  130 (384)
Q Consensus       109 ~~~~~~~~~~~~~L~~L~l~~c  130 (384)
                      ++.  .....+++|++|+++++
T Consensus        78 l~~--~~~~~l~~L~~L~L~~N   97 (162)
T d1a9na_          78 IGE--GLDQALPDLTELILTNN   97 (162)
T ss_dssp             ECS--CHHHHCTTCCEEECCSC
T ss_pred             CCc--cccccccccccceeccc
Confidence            654  12235777777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.81  E-value=1.3e-08  Score=83.95  Aligned_cols=108  Identities=17%  Similarity=0.136  Sum_probs=80.9

Q ss_pred             CceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccc
Q 016694            7 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE   86 (384)
Q Consensus         7 L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   86 (384)
                      .+.++.++. .+..|    |+.+  .+++++|+|++| +++...+...++++++|++|+++++ .+..+++....     
T Consensus        10 ~~~v~Cs~~-~L~~i----P~~l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~-----   75 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEI----PRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE-----   75 (192)
T ss_dssp             TTEEECTTS-CCSSC----CSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT-----
T ss_pred             CCEEEEeCC-CcCcc----CCCC--CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccc-ccccccccccc-----
Confidence            345666666 56666    7654  378999999998 7766555555678999999999999 78777665543     


Q ss_pred             ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccc
Q 016694           87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF  136 (384)
Q Consensus        87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  136 (384)
                          .+++|++|+++++. ++.++.  .....+++|++|+++++ .++.+
T Consensus        76 ----~~~~L~~L~Ls~N~-l~~l~~--~~F~~l~~L~~L~L~~N-~l~~i  117 (192)
T d1w8aa_          76 ----GASHIQELQLGENK-IKEISN--KMFLGLHQLKTLNLYDN-QISCV  117 (192)
T ss_dssp             ----TCTTCCEEECCSCC-CCEECS--SSSTTCTTCCEEECCSS-CCCEE
T ss_pred             ----cccccceeeecccc-ccccCH--HHHhCCCcccccccCCc-ccccc
Confidence                67899999999886 777775  24467899999999985 45543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=6.4e-09  Score=79.29  Aligned_cols=105  Identities=18%  Similarity=0.159  Sum_probs=78.7

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      ..+++|++|+++++ .+..+    |+.++.+++|++|++++| .+++++.   ++++++|++|++++| .+.+++.... 
T Consensus        17 ~~l~~L~~L~ls~N-~l~~l----p~~~~~l~~L~~L~l~~N-~i~~l~~---~~~l~~L~~L~l~~N-~i~~~~~~~~-   85 (124)
T d1dcea3          17 EQLLLVTHLDLSHN-RLRAL----PPALAALRCLEVLQASDN-ALENVDG---VANLPRLQELLLCNN-RLQQSAAIQP-   85 (124)
T ss_dssp             GGGTTCCEEECCSS-CCCCC----CGGGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCCSSSTTGG-
T ss_pred             ccCCCCCEEECCCC-ccCcc----hhhhhhhhcccccccccc-cccccCc---cccccccCeEECCCC-ccCCCCCchh-
Confidence            35789999999999 68777    777889999999999998 7787743   579999999999999 8877754221 


Q ss_pred             cccccccCCcccccceeccCccccccccccCc-ccccCCCCceeE
Q 016694           82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMPELRYL  125 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L  125 (384)
                         +.    .+++|++|++++++ ++..+.+. .....+|+|+.+
T Consensus        86 ---l~----~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          86 ---LV----SCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ---GG----GCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             ---hc----CCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence               12    78899999999887 54443311 123346776655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.68  E-value=3.6e-08  Score=81.18  Aligned_cols=108  Identities=15%  Similarity=0.123  Sum_probs=85.6

Q ss_pred             CCCceEecCCCcCcce-ecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694            5 RDIKYLQLGHFPRLQE-IWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA   83 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~-i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (384)
                      +++++|+++++ .+.. +   .+..+..+++|+.|+++++ ++..+++. .+..+++|++|++++| .+..+++..+.  
T Consensus        29 ~~l~~L~Ls~N-~i~~~~---~~~~f~~l~~L~~L~L~~N-~i~~~~~~-~~~~~~~L~~L~Ls~N-~l~~l~~~~F~--   99 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRIS---SDGLFGRLPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGEN-KIKEISNKMFL--   99 (192)
T ss_dssp             TTCSEEECCSC-CCCSBC---CSCSGGGCTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSC-CCCEECSSSST--
T ss_pred             CCCCEEEeCCC-CCcccc---cccccCCCceEeeeecccc-cccccccc-ccccccccceeeeccc-cccccCHHHHh--
Confidence            57999999999 5643 3   1334578999999999998 66666444 3568999999999999 89999877653  


Q ss_pred             cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                             .+++|++|+++++. ++.++.  .....+++|+++++.+.+
T Consensus       100 -------~l~~L~~L~L~~N~-l~~i~~--~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         100 -------GLHQLKTLNLYDNQ-ISCVMP--GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             -------TCTTCCEEECCSSC-CCEECT--TSSTTCTTCCEEECTTCC
T ss_pred             -------CCCcccccccCCcc-ccccCH--HHhcCCcccccccccccc
Confidence                   78999999999987 777776  234568899999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.9e-10  Score=103.78  Aligned_cols=135  Identities=16%  Similarity=0.101  Sum_probs=75.6

Q ss_pred             CCCcCEEEeecCCCCeeeccc---ccccccCcccEEeecccccccEecccccCccccc-eeeecccceeecccCCCCcee
Q 016694          228 LENLATLEVSKCHGLINVLTL---STSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG-CVVFEELGYLGLDCLPSLTSF  303 (384)
Q Consensus       228 ~~~L~~L~l~~c~~l~~l~~~---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~L~~l  303 (384)
                      ...|+.+.+++|. +......   ......++|++|+++++. +.+.-..   ..... ....+.|++|++++| .+++.
T Consensus       311 ~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~---~l~~~l~~~~~~L~~L~Ls~n-~i~~~  384 (460)
T d1z7xw1         311 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVR---ELCQGLGQPGSVLRVLWLADC-DVSDS  384 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHH---HHHHHHTSTTCCCCEEECTTS-CCCHH
T ss_pred             ccccccccccccc-hhhhhhhhcccccccccchhhhheeeec-ccCcccc---hhhhhhhcccCCCCEEECCCC-CCChH
Confidence            3567888888764 3332111   122345678888888753 4311000   00000 012456888888887 56553


Q ss_pred             cCC---CcccCCCCccEEEeccCCCCCc-----cCCCCc-CCCCCeeeccCCCCCCCCccccCCchHHHHHHHHhhcccc
Q 016694          304 CLG---NYALEFPSLEHVVVRQCPTMKI-----FSQGVV-DAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSK  374 (384)
Q Consensus       304 ~~~---~~~~~~~~L~~L~l~~c~~l~~-----lp~~~~-~~~~L~~l~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  374 (384)
                      ...   ..+..+++|++|+++++ .++.     +...+. +...|+.+.+.++       .|.++....+..++..++++
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~-------~~~~~~~~~l~~l~~~~~~l  456 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDI-------YWSEEMEDRLQALEKDKPSL  456 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTC-------CCCHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCC-------CCCHHHHHHHHHHHHhCCCC
Confidence            211   11335688999999887 3431     222222 2346888888887       55555667777888777766


Q ss_pred             cc
Q 016694          375 EK  376 (384)
Q Consensus       375 ~~  376 (384)
                      ..
T Consensus       457 ~~  458 (460)
T d1z7xw1         457 RV  458 (460)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.7e-07  Score=74.21  Aligned_cols=107  Identities=18%  Similarity=0.130  Sum_probs=79.6

Q ss_pred             CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694            5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (384)
                      ...+.++..+. ...++    |..+..+++|+.|++.++..++.+++.. +.++++|++|++++| +++.+++..+.   
T Consensus         8 ~~~~~l~c~~~-~~~~~----p~~l~~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~f~---   77 (156)
T d2ifga3           8 HGSSGLRCTRD-GALDS----LHHLPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPDAFH---   77 (156)
T ss_dssp             SSSSCEECCSS-CCCTT----TTTSCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTTGGG---
T ss_pred             CCCCeEEecCC-CCccC----cccccCccccCeeecCCCccccccCchh-hccccccCcceeecc-ccCCccccccc---
Confidence            34456666665 33333    6677788999999998876788876554 568999999999999 89988776543   


Q ss_pred             ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                            .+++|++|+++++. ++.++.   ......+|++|++.+.+
T Consensus        78 ------~l~~L~~L~Ls~N~-l~~l~~---~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          78 ------FTPRLSRLNLSFNA-LESLSW---KTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             ------SCSCCCEEECCSSC-CSCCCS---TTTCSCCCCEEECCSSC
T ss_pred             ------ccccccceeccCCC-CcccCh---hhhccccccccccCCCc
Confidence                  78899999999887 777776   44445568888887754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.52  E-value=1.2e-09  Score=90.69  Aligned_cols=42  Identities=19%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCccee
Q 016694           29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV   75 (384)
Q Consensus        29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   75 (384)
                      +..+++|++|++++| +++.++.   ++++++|++|++++| .++.+
T Consensus        44 l~~L~~L~~L~Ls~n-~I~~i~~---l~~l~~L~~L~Ls~N-~i~~i   85 (198)
T d1m9la_          44 LSTLKACKHLALSTN-NIEKISS---LSGMENLRILSLGRN-LIKKI   85 (198)
T ss_dssp             HHHTTTCCEEECSEE-EESCCCC---HHHHTTCCEEECCEE-EECSC
T ss_pred             HhcccccceeECccc-CCCCccc---ccCCccccChhhccc-ccccc
Confidence            344555555555544 3444322   234455555555555 44443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.48  E-value=1.7e-09  Score=89.89  Aligned_cols=106  Identities=16%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (384)
                      .+++|++|+++++ .++.+    + .+..+++|++|++++| .+++++..  ...+++|++|++++| .++.+++..   
T Consensus        46 ~L~~L~~L~Ls~n-~I~~i----~-~l~~l~~L~~L~Ls~N-~i~~i~~~--~~~~~~L~~L~l~~N-~i~~l~~~~---  112 (198)
T d1m9la_          46 TLKACKHLALSTN-NIEKI----S-SLSGMENLRILSLGRN-LIKKIENL--DAVADTLEELWISYN-QIASLSGIE---  112 (198)
T ss_dssp             HTTTCCEEECSEE-EESCC----C-CHHHHTTCCEEECCEE-EECSCSSH--HHHHHHCCEEECSEE-ECCCHHHHH---
T ss_pred             cccccceeECccc-CCCCc----c-cccCCccccChhhccc-cccccccc--ccccccccccccccc-ccccccccc---
Confidence            4789999999998 67765    3 4778999999999998 67777543  345678999999999 788764422   


Q ss_pred             ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694           83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                              .+++|++|+++++. ++.++. ......+++|+.|++++++
T Consensus       113 --------~l~~L~~L~L~~N~-i~~~~~-~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         113 --------KLVNLRVLYMSNNK-ITNWGE-IDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             --------HHHHSSEEEESEEE-CCCHHH-HHHHTTTTTCSEEEECSSH
T ss_pred             --------ccccccccccccch-hccccc-cccccCCCccceeecCCCc
Confidence                    78899999999886 555543 1245679999999999865

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.4e-07  Score=71.71  Aligned_cols=87  Identities=20%  Similarity=0.159  Sum_probs=70.7

Q ss_pred             CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694            2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (384)
                      .++++|++|++.++..++.+.   ++++..+++|+.|++++| +++.+++. .+.++++|++|++++| .++.++...+ 
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~---~~~f~~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~N-~l~~l~~~~~-  100 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLE---LRDLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLSWKTV-  100 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEEC---GGGSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCCSTTT-
T ss_pred             cCccccCeeecCCCccccccC---chhhccccccCcceeecc-ccCCcccc-cccccccccceeccCC-CCcccChhhh-
Confidence            467899999998886788762   345788999999999998 88888655 4578999999999999 8988876653 


Q ss_pred             cccccccCCcccccceeccCccc
Q 016694           82 NADKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~  104 (384)
                               ...+|++|++++++
T Consensus       101 ---------~~~~l~~L~L~~Np  114 (156)
T d2ifga3         101 ---------QGLSLQELVLSGNP  114 (156)
T ss_dssp             ---------CSCCCCEEECCSSC
T ss_pred             ---------ccccccccccCCCc
Confidence                     34579999998876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.33  E-value=3.1e-08  Score=89.29  Aligned_cols=96  Identities=16%  Similarity=0.076  Sum_probs=46.2

Q ss_pred             CCCCCCccEEEeecCCCCcccCchhH---HhcCCCCCEEEEecccCcceecccc-----cccccccccCCcccccceecc
Q 016694           29 VSFFNNLRHLVVDDCTNMLSAIPANL---IRCLNNLRWLEVRNCDSLEEVLHLE-----ELNADKEHIGPLFPKLFELTL  100 (384)
Q Consensus        29 i~~l~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~L~~L~l  100 (384)
                      +....+|+.|+|++| .+.......+   +...++|+.|+++++ .........     .....+.    .+++|++|++
T Consensus        27 L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~l~----~~~~L~~L~L  100 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALL----KCPKLHTVRL  100 (344)
T ss_dssp             HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHT----TCTTCCEEEC
T ss_pred             HhhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCC-cccccccccchHHHHHHHHHh----hCCCcccccc
Confidence            345667777777765 4433222221   234577777777766 222111100     0001111    4566777777


Q ss_pred             Ccccccccc--ccCcccccCCCCceeEeeccCC
Q 016694          101 MDLPKLKRF--CNFTENIIEMPELRYLAIENCP  131 (384)
Q Consensus       101 ~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~  131 (384)
                      +++. +...  ..+.......++|++|++++|.
T Consensus       101 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1         101 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccc-cccccccchhhhhcccccchheeccccc
Confidence            7664 2211  0001123346677777777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.2e-08  Score=90.65  Aligned_cols=116  Identities=19%  Similarity=0.234  Sum_probs=70.6

Q ss_pred             CCCceEecCCCcCcce-ecccCCCCCCCCCCccEEEeecCCCCcccCch---hHHhcCCCCCEEEEecccCcceeccccc
Q 016694            5 RDIKYLQLGHFPRLQE-IWHGQALPVSFFNNLRHLVVDDCTNMLSAIPA---NLIRCLNNLRWLEVRNCDSLEEVLHLEE   80 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~-i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (384)
                      ++|++|+++.+ .+.+ .|...   +..++++|+|+|++| .+++....   ..++.+++|++|++++| .+....... 
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~~l---~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~-   74 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWAEL---LPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHC-   74 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHH---HHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHH-
T ss_pred             CCCCEEEeeCC-cCChHHHHHH---HHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHH-
Confidence            35889999887 5543 22221   346789999999999 56643222   23468899999999988 664321111 


Q ss_pred             ccccccccCCcccccceeccCcccccccccc--CcccccCCCCceeEeeccCC
Q 016694           81 LNADKEHIGPLFPKLFELTLMDLPKLKRFCN--FTENIIEMPELRYLAIENCP  131 (384)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~L~~L~l~~c~  131 (384)
                      ....+.   ....+|++|++++|. ++....  .......+++|++|+++++.
T Consensus        75 l~~~l~---~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          75 VLQGLQ---TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHTTC---STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHh---cCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            000111   123579999999886 543211  01134567889999988864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.23  E-value=5.8e-08  Score=87.49  Aligned_cols=267  Identities=13%  Similarity=0.099  Sum_probs=136.1

Q ss_pred             HhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccccc--------CcccccCCCCceeEe
Q 016694           55 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN--------FTENIIEMPELRYLA  126 (384)
Q Consensus        55 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~~~~~~~~~L~~L~  126 (384)
                      +.....|++|++++| .+..... ......+.    ..++|+.+++.++.. .....        ....+..+++|+.|+
T Consensus        27 L~~~~~l~~L~Ls~n-~i~~~~~-~~l~~~l~----~~~~L~~l~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGN-TIGTEAA-RWLSENIA----SKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HHHCSCCCEEECTTS-EECHHHH-HHHHHTTT----TCTTCCEEECCSCCT-TSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HhhCCCCCEEECcCC-cCCHHHH-HHHHHHHH----hCCCCCEEECCCCcc-cccccccchHHHHHHHHHhhCCCccccc
Confidence            567899999999998 5533211 11111122    567899999886641 11100        011344577888888


Q ss_pred             eccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccc----cc---
Q 016694          127 IENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN----DE---  199 (384)
Q Consensus       127 l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~---  199 (384)
                      +++|. ++..                            ++..+.......++|+.|+++++. +.......    +.   
T Consensus       100 L~~n~-i~~~----------------------------~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~  149 (344)
T d2ca6a1         100 LSDNA-FGPT----------------------------AQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELA  149 (344)
T ss_dssp             CCSCC-CCTT----------------------------THHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHH
T ss_pred             ccccc-cccc----------------------------cccchhhhhcccccchheeccccc-ccccccccccccccccc
Confidence            88763 2211                            111111111145667777776652 21100000    00   


Q ss_pred             ---cccccccccEEeeccCcc----cccccCCcccCCCcCEEEeecCCCCeeec----ccccccccCcccEEeecccccc
Q 016694          200 ---SNKAFANLIRLKISECSK----LQKLVTPSWHLENLATLEVSKCHGLINVL----TLSTSESLVNLGRMKIADCKMI  268 (384)
Q Consensus       200 ---~~~~~~~L~~L~l~~~~~----l~~l~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~~~l~~L~~L~l~~c~~l  268 (384)
                         .....+.|+.+.++++..    ...+...+..++.|++|++++|. +.+..    ....+...++|+.|+++++. +
T Consensus       150 ~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i  227 (344)
T d2ca6a1         150 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-F  227 (344)
T ss_dssp             HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-C
T ss_pred             cccccccCcccceeecccccccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-c
Confidence               012345677777766431    11222334556778888887764 33210    11223456778888887653 2


Q ss_pred             cEecccccCcc--ccceeeecccceeecccCCCCceecCCC---cc--cCCCCccEEEeccCCCCCc-----cCCCCc-C
Q 016694          269 EQIIQLQVGEE--AKGCVVFEELGYLGLDCLPSLTSFCLGN---YA--LEFPSLEHVVVRQCPTMKI-----FSQGVV-D  335 (384)
Q Consensus       269 ~~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~~L~~l~~~~---~~--~~~~~L~~L~l~~c~~l~~-----lp~~~~-~  335 (384)
                      ...     +..  ......+++|++|++++|. +++-....   .+  ...+.|++|++++|. ++.     +...+. .
T Consensus       228 ~~~-----g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~  300 (344)
T d2ca6a1         228 THL-----GSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEK  300 (344)
T ss_dssp             HHH-----HHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHH
T ss_pred             ccc-----ccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHcc
Confidence            210     000  1122236778888887763 43321110   01  124689999998874 432     333332 4


Q ss_pred             CCCCeeeccCCCCCCCCccccCCchHHHHHHHHhhcc
Q 016694          336 APKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMN  372 (384)
Q Consensus       336 ~~~L~~l~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~  372 (384)
                      .++|++++++++     ...-++..-..++..+....
T Consensus       301 ~~~L~~L~l~~N-----~~~~~~~~~~~l~~~~~~~~  332 (344)
T d2ca6a1         301 MPDLLFLELNGN-----RFSEEDDVVDEIREVFSTRG  332 (344)
T ss_dssp             CTTCCEEECTTS-----BSCTTSHHHHHHHHHHHHHT
T ss_pred             CCCCCEEECCCC-----cCCCcchHHHHHHHHHHHcc
Confidence            678999999988     33323333345666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=6.1e-05  Score=59.33  Aligned_cols=63  Identities=19%  Similarity=0.152  Sum_probs=34.1

Q ss_pred             CCCCccEEEeecCCCCcccCc-hhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIP-ANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP  104 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  104 (384)
                      .+++|++|++++| +++++.+ ...++.+++|++|++++| .++++.+....         ...+|++|++.+++
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l---------~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI---------KGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH---------TTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhh---------hccccceeecCCCC
Confidence            3556666666666 5555433 223456666666666666 55555432211         23346666666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=7.6e-05  Score=58.74  Aligned_cols=67  Identities=21%  Similarity=0.108  Sum_probs=49.6

Q ss_pred             CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcce
Q 016694            3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE   74 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~   74 (384)
                      .+++|++|++++| .++.+.. .+..+..+++|++|++++| .++++...... +..+|++|++.+| .+..
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~-~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l-~~~~L~~L~L~~N-pl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDD-MSSIVQKAPNLKILNLSGN-ELKSERELDKI-KGLKLEELWLDGN-SLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSG-GGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH-TTCCCSSCCCTTS-TTSS
T ss_pred             hCCCCCEeeCCCc-cccCCch-hHHHHhhCCcccccccccC-ccccchhhhhh-hccccceeecCCC-CcCc
Confidence            4789999999999 6766411 1223456899999999998 77887665544 4457999999999 4543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.16  E-value=0.0028  Score=49.59  Aligned_cols=14  Identities=7%  Similarity=0.081  Sum_probs=7.8

Q ss_pred             cCCCCceeEeeccC
Q 016694          117 IEMPELRYLAIENC  130 (384)
Q Consensus       117 ~~~~~L~~L~l~~c  130 (384)
                      ...+.|++|++.++
T Consensus        97 ~~n~sL~~L~l~~n  110 (167)
T d1pgva_          97 LVTQSIVEFKADNQ  110 (167)
T ss_dssp             TTTCCCSEEECCCC
T ss_pred             HhCCcCCEEECCCC
Confidence            34455666666553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.66  E-value=0.0028  Score=49.48  Aligned_cols=93  Identities=11%  Similarity=0.039  Sum_probs=46.2

Q ss_pred             CCCCccEEEeecCCCCcccCchhH---HhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccc
Q 016694           31 FFNNLRHLVVDDCTNMLSAIPANL---IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLK  107 (384)
Q Consensus        31 ~l~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  107 (384)
                      +.++|++|+++++..++......+   +...++|++|++++| .+..... ......+.    ..++++.+++.++..-.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~-~~L~~~l~----~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVA-FALAEMLK----VNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHH-HHHHHHHH----HCSSCCEEECCSSCCCH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHH-HHHHHHHh----hcccchhhhhccccccc
Confidence            456777777776545544322222   235677888888877 5543211 11111112    34567777776664211


Q ss_pred             c-cccCcccccCCCCceeEeecc
Q 016694          108 R-FCNFTENIIEMPELRYLAIEN  129 (384)
Q Consensus       108 ~-~~~~~~~~~~~~~L~~L~l~~  129 (384)
                      + +..+.......++|+.+++..
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCC
T ss_pred             hhHHHHHHHHHhCccccEEeecc
Confidence            1 000011334456676666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.51  E-value=0.0093  Score=46.40  Aligned_cols=13  Identities=8%  Similarity=0.128  Sum_probs=7.6

Q ss_pred             ccCCccEEecccc
Q 016694          175 AFPQLRYLELSRL  187 (384)
Q Consensus       175 ~~~~L~~L~l~~~  187 (384)
                      ..++|++|+++++
T Consensus        42 ~n~~L~~L~Ls~n   54 (167)
T d1pgva_          42 NSKHIEKFSLANT   54 (167)
T ss_dssp             TCSCCCEEECTTS
T ss_pred             hCCccceeecccc
Confidence            4455666666655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.42  E-value=0.0068  Score=47.09  Aligned_cols=13  Identities=0%  Similarity=0.003  Sum_probs=8.0

Q ss_pred             ccCCccEEecccc
Q 016694          175 AFPQLRYLELSRL  187 (384)
Q Consensus       175 ~~~~L~~L~l~~~  187 (384)
                      ..++|++|+++++
T Consensus        44 ~n~~L~~L~Ls~n   56 (166)
T d1io0a_          44 TNTYVKKFSIVGT   56 (166)
T ss_dssp             TCCSCCEEECTTS
T ss_pred             cCCccCeeeccCC
Confidence            4556666666665