Citrus Sinensis ID: 016711
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | 2.2.26 [Sep-21-2011] | |||||||
| O65251 | 383 | Flap endonuclease 1 OS=Ar | yes | no | 0.994 | 0.997 | 0.870 | 0.0 | |
| C6TEX6 | 382 | Flap endonuclease 1 OS=Gl | yes | no | 0.960 | 0.965 | 0.875 | 0.0 | |
| C5YUK3 | 380 | Flap endonuclease 1-A OS= | N/A | no | 0.932 | 0.942 | 0.855 | 0.0 | |
| B8AW67 | 380 | Flap endonuclease 1-A OS= | N/A | no | 0.958 | 0.968 | 0.840 | 0.0 | |
| Q9SXQ6 | 380 | Flap endonuclease 1-A OS= | yes | no | 0.958 | 0.968 | 0.840 | 0.0 | |
| B4FHY0 | 379 | Flap endonuclease 1 OS=Ze | N/A | no | 0.932 | 0.944 | 0.852 | 0.0 | |
| A9S0B8 | 394 | Flap endonuclease 1-A OS= | N/A | no | 0.901 | 0.878 | 0.748 | 1e-162 | |
| A9U328 | 349 | Flap endonuclease 1-B OS= | N/A | no | 0.890 | 0.979 | 0.757 | 1e-157 | |
| Q75LI2 | 412 | Flap endonuclease 1-B OS= | no | no | 0.934 | 0.871 | 0.673 | 1e-143 | |
| B8AMS4 | 412 | Flap endonuclease 1-B OS= | N/A | no | 0.934 | 0.871 | 0.673 | 1e-143 |
| >sp|O65251|FEN1_ARATH Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2 | Back alignment and function desciption |
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Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/385 (87%), Positives = 361/385 (93%), Gaps = 3/385 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAP MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTGTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL A+EAGN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+VY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TDEEQL IKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
++PDEEG++ FLV+ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPVAN+S P KRKE
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRKE 360
Query: 361 -PENTPKATTNKKSKAGGGGGRKRK 384
PE+T K NKK+K G GGRK+K
Sbjct: 361 IPESTTKGAANKKTK--GAGGRKKK 383
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Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: -EC: .EC: - |
| >sp|C6TEX6|FEN1_SOYBN Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1 | Back alignment and function description |
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| >sp|C5YUK3|FEN11_SORBI Flap endonuclease 1-A OS=Sorghum bicolor GN=FEN1-A PE=3 SV=1 | Back alignment and function description |
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| >sp|B8AW67|FEN11_ORYSI Flap endonuclease 1-A OS=Oryza sativa subsp. indica GN=FEN1a PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9SXQ6|FEN11_ORYSJ Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1 | Back alignment and function description |
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| >sp|B4FHY0|FEN1_MAIZE Flap endonuclease 1 OS=Zea mays GN=FEN1 PE=2 SV=1 | Back alignment and function description |
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| >sp|A9S0B8|FEN11_PHYPA Flap endonuclease 1-A OS=Physcomitrella patens subsp. patens GN=FEN1-A PE=3 SV=1 | Back alignment and function description |
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| >sp|A9U328|FEN12_PHYPA Flap endonuclease 1-B OS=Physcomitrella patens subsp. patens GN=FEN1-B PE=3 SV=1 | Back alignment and function description |
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| >sp|Q75LI2|FEN12_ORYSJ Flap endonuclease 1-B OS=Oryza sativa subsp. japonica GN=FEN-1b PE=2 SV=1 | Back alignment and function description |
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| >sp|B8AMS4|FEN12_ORYSI Flap endonuclease 1-B OS=Oryza sativa subsp. indica GN=FEN1b PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | ||||||
| 359487708 | 384 | PREDICTED: flap endonuclease 1-like [Vit | 0.997 | 0.997 | 0.880 | 0.0 | |
| 238481386 | 383 | flap endonuclease-1 [Arabidopsis thalian | 0.994 | 0.997 | 0.870 | 0.0 | |
| 296089863 | 416 | unnamed protein product [Vitis vinifera] | 0.937 | 0.865 | 0.897 | 0.0 | |
| 449510827 | 382 | PREDICTED: LOW QUALITY PROTEIN: flap end | 0.981 | 0.986 | 0.867 | 0.0 | |
| 356575281 | 382 | PREDICTED: flap endonuclease 1-like [Gly | 0.960 | 0.965 | 0.881 | 0.0 | |
| 297812863 | 448 | hypothetical protein ARALYDRAFT_489493 [ | 0.934 | 0.801 | 0.891 | 0.0 | |
| 363806970 | 382 | flap endonuclease 1 [Glycine max] gi|317 | 0.960 | 0.965 | 0.875 | 0.0 | |
| 42570539 | 453 | flap endonuclease-1 [Arabidopsis thalian | 0.934 | 0.792 | 0.891 | 0.0 | |
| 449435964 | 377 | PREDICTED: flap endonuclease 1-like [Cuc | 0.921 | 0.938 | 0.892 | 0.0 | |
| 357441985 | 384 | Flap endonuclease 1a [Medicago truncatul | 0.955 | 0.955 | 0.875 | 0.0 |
| >gi|359487708|ref|XP_002278964.2| PREDICTED: flap endonuclease 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/384 (88%), Positives = 367/384 (95%), Gaps = 1/384 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFES+FGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKR+S+RADAT+DL EA+E GN
Sbjct: 61 VTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDLTEALETGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE+IEKFSKRTVKVTKQHN+DCK+LL+LMGVPV+EAPSEAEAQCAALCKSG+VYAVASED
Sbjct: 121 KEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSSRKIPVMEF++ KILEELNLTMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIE ILENINRERYQIP+DWPYQEARRLFKEP+V +D+EQL IKW
Sbjct: 241 GIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPQVFSDDEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
SAPDEEGLI FLV+ENGFNSDRVTKAIEKIK AKNKSSQGRLESFFKPV ++S PIKRKE
Sbjct: 301 SAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFFKPVVSSSIPIKRKE 360
Query: 361 PEN-TPKATTNKKSKAGGGGGRKR 383
E+ K TTNKKSKAGGG RK+
Sbjct: 361 TEDKAAKETTNKKSKAGGGSKRKK 384
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238481386|ref|NP_001154740.1| flap endonuclease-1 [Arabidopsis thaliana] gi|317374929|sp|O65251.2|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap structure-specific endonuclease 1 gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449510827|ref|XP_004163772.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356575281|ref|XP_003555770.1| PREDICTED: flap endonuclease 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297812863|ref|XP_002874315.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp. lyrata] gi|297320152|gb|EFH50574.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|363806970|ref|NP_001242313.1| flap endonuclease 1 [Glycine max] gi|317376195|sp|C6TEX6.1|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap structure-specific endonuclease 1 gi|255640175|gb|ACU20378.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|42570539|ref|NP_850877.2| flap endonuclease-1 [Arabidopsis thaliana] gi|332006193|gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449435964|ref|XP_004135764.1| PREDICTED: flap endonuclease 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357441985|ref|XP_003591270.1| Flap endonuclease 1a [Medicago truncatula] gi|355480318|gb|AES61521.1| Flap endonuclease 1a [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | ||||||
| TAIR|locus:2146824 | 453 | AT5G26680 [Arabidopsis thalian | 0.934 | 0.792 | 0.860 | 1.2e-166 | |
| ZFIN|ZDB-GENE-031112-11 | 380 | fen1 "flap structure-specific | 0.945 | 0.955 | 0.580 | 2.3e-110 | |
| UNIPROTKB|Q5ZLN4 | 381 | FEN1 "Flap endonuclease 1" [Ga | 0.953 | 0.960 | 0.549 | 2.4e-108 | |
| RGD|621821 | 380 | Fen1 "flap structure-specific | 0.940 | 0.95 | 0.551 | 2.4e-108 | |
| UNIPROTKB|P39748 | 380 | FEN1 "Flap endonuclease 1" [Ho | 0.947 | 0.957 | 0.552 | 6.3e-108 | |
| UNIPROTKB|Q58DH8 | 380 | FEN1 "Flap endonuclease 1" [Bo | 0.940 | 0.95 | 0.557 | 2.1e-107 | |
| UNIPROTKB|J9PB88 | 380 | FEN1 "Flap endonuclease 1" [Ca | 0.945 | 0.955 | 0.551 | 2.1e-107 | |
| UNIPROTKB|F1RKS3 | 380 | FEN1 "Flap endonuclease 1" [Su | 0.945 | 0.955 | 0.551 | 4.4e-107 | |
| UNIPROTKB|P70054 | 382 | fen1-b "Flap endonuclease 1-B" | 0.937 | 0.942 | 0.553 | 3.1e-106 | |
| MGI|MGI:102779 | 378 | Fen1 "flap structure specific | 0.934 | 0.949 | 0.554 | 1.4e-105 |
| TAIR|locus:2146824 AT5G26680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1621 (575.7 bits), Expect = 1.2e-166, P = 1.2e-166
Identities = 309/359 (86%), Positives = 332/359 (92%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAP MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTGTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL A+EAGN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+VY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TDEEQL IKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRK 359
++PDEEG++ FLV+ENGFN DRVT SSQGRLESFFKPVAN+S P KRK
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRK 359
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| ZFIN|ZDB-GENE-031112-11 fen1 "flap structure-specific endonuclease 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5ZLN4 FEN1 "Flap endonuclease 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| RGD|621821 Fen1 "flap structure-specific endonuclease 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P39748 FEN1 "Flap endonuclease 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q58DH8 FEN1 "Flap endonuclease 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9PB88 FEN1 "Flap endonuclease 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RKS3 FEN1 "Flap endonuclease 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P70054 fen1-b "Flap endonuclease 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| MGI|MGI:102779 Fen1 "flap structure specific endonuclease 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5I4H3 | FEN1_XIPMA | 3, ., 1, ., -, ., - | 0.5807 | 0.9843 | 0.9947 | N/A | no |
| Q9N3T2 | FEN1_CAEEL | 3, ., 1, ., -, ., - | 0.5462 | 0.8958 | 0.9005 | yes | no |
| A8J2Z9 | FEN1_CHLRE | 3, ., 1, ., -, ., - | 0.6088 | 0.9453 | 0.9166 | N/A | no |
| A4S1G4 | FEN1_OSTLU | 3, ., 1, ., -, ., - | 0.5923 | 0.9947 | 0.9820 | yes | no |
| B3RVF0 | FEN1_TRIAD | 3, ., 1, ., -, ., - | 0.5515 | 0.9218 | 0.9389 | N/A | no |
| Q7K7A9 | FEN1_DROME | 3, ., 1, ., -, ., - | 0.5193 | 0.9947 | 0.9922 | yes | no |
| Q58DH8 | FEN1_BOVIN | 3, ., 1, ., -, ., - | 0.5580 | 0.9348 | 0.9447 | yes | no |
| P70040 | FEN1A_XENLA | 3, ., 1, ., -, ., - | 0.5497 | 0.9348 | 0.9397 | N/A | no |
| C3KJE6 | FEN1_ANOFI | 3, ., 1, ., -, ., - | 0.5729 | 0.9843 | 0.9947 | N/A | no |
| Q013G9 | FEN1_OSTTA | 3, ., 1, ., -, ., - | 0.5781 | 0.9817 | 0.9691 | yes | no |
| A7RRJ0 | FEN1_NEMVE | 3, ., 1, ., -, ., - | 0.5649 | 0.9661 | 0.9840 | N/A | no |
| C3ZBT0 | FEN1_BRAFL | 3, ., 1, ., -, ., - | 0.5729 | 0.9895 | 1.0 | yes | no |
| A9U328 | FEN12_PHYPA | 3, ., 1, ., -, ., - | 0.7573 | 0.8906 | 0.9799 | N/A | no |
| B6QT52 | FEN1_PENMQ | 3, ., 1, ., -, ., - | 0.5365 | 0.9401 | 0.9139 | N/A | no |
| B4KNM1 | FEN1_DROMO | 3, ., 1, ., -, ., - | 0.5358 | 0.9947 | 0.9845 | N/A | no |
| C5WU23 | FEN12_SORBI | 3, ., 1, ., -, ., - | 0.6224 | 0.9270 | 0.8317 | N/A | no |
| A7UW97 | FEN1_NEUCR | 3, ., 1, ., -, ., - | 0.5477 | 0.9140 | 0.8908 | N/A | no |
| Q6TNU4 | FEN1A_DANRE | 3, ., 1, ., -, ., - | 0.5729 | 0.9895 | 1.0 | yes | no |
| Q4R5U5 | FEN1_MACFA | 3, ., 1, ., -, ., - | 0.5456 | 0.9843 | 0.9947 | N/A | no |
| D3TQJ5 | FEN1_GLOMM | 3, ., 1, ., -, ., - | 0.5558 | 0.9843 | 0.9895 | N/A | no |
| C7Z125 | FEN1_NECH7 | 3, ., 1, ., -, ., - | 0.5391 | 0.9192 | 0.8936 | N/A | no |
| B4J6M4 | FEN1_DROGR | 3, ., 1, ., -, ., - | 0.5397 | 0.9375 | 0.9278 | N/A | no |
| D3BN56 | FEN1_POLPA | 3, ., 1, ., -, ., - | 0.5105 | 0.9661 | 0.9561 | N/A | no |
| A8XL25 | FEN1_CAEBR | 3, ., 1, ., -, ., - | 0.5520 | 0.8958 | 0.9005 | N/A | no |
| A9S0B8 | FEN11_PHYPA | 3, ., 1, ., -, ., - | 0.7485 | 0.9010 | 0.8781 | N/A | no |
| C5YUK3 | FEN11_SORBI | 3, ., 1, ., -, ., - | 0.8555 | 0.9322 | 0.9421 | N/A | no |
| P39750 | FEN1_SCHPO | 3, ., 1, ., -, ., - | 0.5208 | 0.9843 | 0.9947 | yes | no |
| C1BM18 | FEN1_OSMMO | 3, ., 1, ., -, ., - | 0.5755 | 0.9843 | 0.9947 | N/A | no |
| B8AMS4 | FEN12_ORYSI | 3, ., 1, ., -, ., - | 0.6730 | 0.9348 | 0.8713 | N/A | no |
| P70054 | FEN1B_XENLA | 3, ., 1, ., -, ., - | 0.5580 | 0.9348 | 0.9397 | N/A | no |
| B9EMY6 | FEN1_SALSA | 3, ., 1, ., -, ., - | 0.5651 | 0.9843 | 0.9947 | N/A | no |
| Q178M1 | FEN1_AEDAE | 3, ., 1, ., -, ., - | 0.5703 | 0.9895 | 1.0 | N/A | no |
| B6JYI7 | FEN1_SCHJY | 3, ., 1, ., -, ., - | 0.5454 | 0.9140 | 0.9310 | N/A | no |
| C6TEX6 | FEN1_SOYBN | 3, ., 1, ., -, ., - | 0.8756 | 0.9609 | 0.9659 | yes | no |
| Q5XIP6 | FEN1_RAT | 3, ., 1, ., -, ., - | 0.5364 | 0.9843 | 0.9947 | yes | no |
| B1H158 | FEN1_XENTR | 3, ., 1, ., -, ., - | 0.5662 | 0.9348 | 0.9397 | yes | no |
| Q5ZLN4 | FEN1_CHICK | 3, ., 1, ., -, ., - | 0.5338 | 0.9869 | 0.9947 | yes | no |
| B4FHY0 | FEN1_MAIZE | 3, ., 1, ., -, ., - | 0.8527 | 0.9322 | 0.9445 | N/A | no |
| B4LM90 | FEN1_DROVI | 3, ., 1, ., -, ., - | 0.5244 | 0.9921 | 0.9870 | N/A | no |
| A4QS18 | FEN1_MAGO7 | 3, ., 1, ., -, ., - | 0.5393 | 0.9166 | 0.8934 | N/A | no |
| Q7Q323 | FEN1_ANOGA | 3, ., 1, ., -, ., - | 0.5677 | 0.9921 | 0.9947 | yes | no |
| C8BKD0 | FEN1_SHEEP | 3, ., 1, ., -, ., - | 0.5430 | 0.9843 | 0.9947 | N/A | no |
| C1E3X9 | FEN1_MICSR | 3, ., 1, ., -, ., - | 0.5950 | 0.9401 | 0.9401 | yes | no |
| Q9SXQ6 | FEN11_ORYSJ | 3, ., 1, ., -, ., - | 0.8409 | 0.9583 | 0.9684 | yes | no |
| Q5B9L6 | FEN1_EMENI | 3, ., 1, ., -, ., - | 0.5230 | 0.9401 | 0.9139 | yes | no |
| O65251 | FEN1_ARATH | 3, ., 1, ., -, ., - | 0.8701 | 0.9947 | 0.9973 | yes | no |
| P39748 | FEN1_HUMAN | 3, ., 1, ., -, ., - | 0.5509 | 0.9843 | 0.9947 | yes | no |
| P39749 | FEN1_MOUSE | 3, ., 1, ., -, ., - | 0.5390 | 0.9791 | 0.9947 | yes | no |
| B8AW67 | FEN11_ORYSI | 3, ., 1, ., -, ., - | 0.8409 | 0.9583 | 0.9684 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 384 | |||
| PTZ00217 | 393 | PTZ00217, PTZ00217, flap endonuclease-1; Provision | 0.0 | |
| cd09867 | 261 | cd09867, PIN_FEN1, PIN domain of Flap Endonuclease | 1e-126 | |
| TIGR03674 | 338 | TIGR03674, fen_arch, flap structure-specific endon | 1e-117 | |
| PRK03980 | 292 | PRK03980, PRK03980, flap endonuclease-1; Provision | 1e-113 | |
| cd00128 | 209 | cd00128, PIN_FEN1_EXO1-like, PIN domains of Flap E | 4e-66 | |
| COG0258 | 310 | COG0258, Exo, 5'-3' exonuclease (including N-termi | 2e-64 | |
| cd09868 | 249 | cd09868, PIN_XPG, PIN domain of Xeroderma pigmento | 1e-44 | |
| cd09907 | 70 | cd09907, H3TH_FEN1-Euk, H3TH domain of Flap Endonu | 7e-43 | |
| cd09853 | 163 | cd09853, PIN_StructSpec-5'-nucleases, PIN domains | 6e-39 | |
| smart00485 | 99 | smart00485, XPGN, Xeroderma pigmentosum G N-region | 1e-37 | |
| cd09856 | 207 | cd09856, PIN_FEN1-like, PIN domain of Flap Endonuc | 2e-35 | |
| cd09901 | 73 | cd09901, H3TH_FEN1-like, H3TH domains of Flap endo | 4e-33 | |
| smart00484 | 73 | smart00484, XPGI, Xeroderma pigmentosum G I-region | 5e-31 | |
| pfam00752 | 100 | pfam00752, XPG_N, XPG N-terminal domain | 4e-29 | |
| cd09869 | 233 | cd09869, PIN_GEN1, PIN domain of Gap Endonuclease | 4e-28 | |
| cd09857 | 210 | cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a | 6e-27 | |
| cd09897 | 68 | cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap | 3e-26 | |
| cd09870 | 239 | cd09870, PIN_YEN1, PIN domain of Yeast Endonucleas | 4e-22 | |
| pfam00867 | 46 | pfam00867, XPG_I, XPG I-region | 2e-21 | |
| cd09867 | 261 | cd09867, PIN_FEN1, PIN domain of Flap Endonuclease | 3e-21 | |
| TIGR00600 | 1034 | TIGR00600, rad2, DNA excision repair protein (rad2 | 2e-15 | |
| cd00080 | 71 | cd00080, H3TH_StructSpec-5'-nucleases, H3TH domain | 2e-15 | |
| TIGR00600 | 1034 | TIGR00600, rad2, DNA excision repair protein (rad2 | 2e-13 | |
| cd09908 | 73 | cd09908, H3TH_EXO1, H3TH domain of Exonuclease-1, | 2e-13 | |
| cd09903 | 65 | cd09903, H3TH_FEN1-Arc, H3TH domain of Flap Endonu | 4e-13 | |
| cd09852 | 120 | cd09852, PIN_SF, PIN (PilT N terminus) domain: Sup | 3e-11 | |
| smart00475 | 259 | smart00475, 53EXOc, 5'-3' exonuclease | 8e-11 | |
| TIGR00593 | 887 | TIGR00593, pola, DNA polymerase I | 1e-10 | |
| cd09858 | 215 | cd09858, PIN_MKT1, PIN domain of Mkt1: A global re | 2e-10 | |
| cd09900 | 52 | cd09900, H3TH_XPG-like, H3TH domains of Flap endon | 3e-09 | |
| PRK05755 | 880 | PRK05755, PRK05755, DNA polymerase I; Provisional | 3e-08 | |
| smart00279 | 36 | smart00279, HhH2, Helix-hairpin-helix class 2 (Pol | 1e-07 | |
| cd09898 | 73 | cd09898, H3TH_53EXO, H3TH domain of the 5'-3' exon | 7e-07 | |
| pfam01367 | 100 | pfam01367, 5_3_exonuc, 5'-3' exonuclease, C-termin | 7e-07 | |
| PRK14976 | 281 | PRK14976, PRK14976, 5'-3' exonuclease; Provisional | 4e-05 | |
| cd09904 | 97 | cd09904, H3TH_XPG, H3TH domain of Xeroderma pigmen | 1e-04 | |
| cd09902 | 81 | cd09902, H3TH_MKT1, H3TH domain of Mkt1: A global | 1e-04 | |
| cd09905 | 108 | cd09905, H3TH_GEN1, H3TH domain of Gap Endonucleas | 0.001 |
| >gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
Score = 553 bits (1427), Expect = 0.0
Identities = 215/393 (54%), Positives = 290/393 (73%), Gaps = 10/393 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM-LTNEAG 59
MGIKGL+K LAD AP ++KEQ+ ++YFGR IAIDASM++YQFLI + LTNEAG
Sbjct: 1 MGIKGLSKFLADKAPNAIKEQELKNYFGRVIAIDASMALYQFLIAIRDDSQGGNLTNEAG 60
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
EVTSH+ G+F RTIRLLEAG+KP+YVFDG+PP+LK EL KR +R +A ++L +A+E G
Sbjct: 61 EVTSHISGLFNRTIRLLEAGIKPVYVFDGKPPELKSGELEKRRERREEAEEELEKAIEEG 120
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ E+I+K SKRTV+VTK+ N+D K+LL+LMG+PV+EAP EAEAQCA L K G+VYAVA+E
Sbjct: 121 DDEEIKKQSKRTVRVTKEQNEDAKKLLRLMGIPVIEAPCEAEAQCAELVKKGKVYAVATE 180
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
DMD+LTFG P LR+L ++K P+ E ++ +LEEL L+MDQFIDLCIL GCDYCD+I
Sbjct: 181 DMDALTFGTPVLLRNLNFSEAKKRPIQEINLSTVLEELGLSMDQFIDLCILCGCDYCDTI 240
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
+GIG +TA KLI+++ SIE ILE++++ +Y +PE++ Y+EAR LF PE VT E++ +K
Sbjct: 241 KGIGPKTAYKLIKKYKSIEEILEHLDKTKYPVPENFDYKEARELFLNPE-VTPAEEIDLK 299
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV------ANTS 353
W+ PDEEGL FLV E FN +RV K IE++K AK K +Q RL+SFF +N+
Sbjct: 300 WNEPDEEGLKKFLVKEKNFNEERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSK 359
Query: 354 APIK--RKEPENTPKATTNKKSKAGGGGGRKRK 384
A +K +K+ + + +A G +K K
Sbjct: 360 AKLKKKKKKAGASAVPKSETSQEAKSSGKKKVK 392
|
Length = 393 |
| >gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease | Back alignment and domain information |
|---|
| >gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|189020 cd00128, PIN_FEN1_EXO1-like, PIN domains of Flap Endonuclease-1 (FEN1)-like and Exonuclease-1 (EXO1)-like nucleases, structure-specific, divalent-metal-ion dependent, 5' nucleases | Back alignment and domain information |
|---|
| >gnl|CDD|223336 COG0258, Exo, 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|189038 cd09868, PIN_XPG, PIN domain of Xeroderma pigmentosum complementation group G (XPG) nuclease, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|188627 cd09907, H3TH_FEN1-Euk, H3TH domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease: Eukaryotic homologs | Back alignment and domain information |
|---|
| >gnl|CDD|189023 cd09853, PIN_StructSpec-5'-nucleases, PIN domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination | Back alignment and domain information |
|---|
| >gnl|CDD|214690 smart00485, XPGN, Xeroderma pigmentosum G N-region | Back alignment and domain information |
|---|
| >gnl|CDD|189026 cd09856, PIN_FEN1-like, PIN domain of Flap Endonuclease-1 (FEN1)-like, structure-specific, divalent-metal-ion dependent, 5' nucleases | Back alignment and domain information |
|---|
| >gnl|CDD|188621 cd09901, H3TH_FEN1-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (eukaryotic) and EXO1 | Back alignment and domain information |
|---|
| >gnl|CDD|214689 smart00484, XPGI, Xeroderma pigmentosum G I-region | Back alignment and domain information |
|---|
| >gnl|CDD|216098 pfam00752, XPG_N, XPG N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|189039 cd09869, PIN_GEN1, PIN domain of Gap Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|188617 cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases | Back alignment and domain information |
|---|
| >gnl|CDD|189040 cd09870, PIN_YEN1, PIN domain of Yeast Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and fungal homologs | Back alignment and domain information |
|---|
| >gnl|CDD|216163 pfam00867, XPG_I, XPG I-region | Back alignment and domain information |
|---|
| >gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2) | Back alignment and domain information |
|---|
| >gnl|CDD|188616 cd00080, H3TH_StructSpec-5'-nucleases, H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination | Back alignment and domain information |
|---|
| >gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2) | Back alignment and domain information |
|---|
| >gnl|CDD|188628 cd09908, H3TH_EXO1, H3TH domain of Exonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease | Back alignment and domain information |
|---|
| >gnl|CDD|188623 cd09903, H3TH_FEN1-Arc, H3TH domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease: Archaeal homologs | Back alignment and domain information |
|---|
| >gnl|CDD|189022 cd09852, PIN_SF, PIN (PilT N terminus) domain: Superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|214682 smart00475, 53EXOc, 5'-3' exonuclease | Back alignment and domain information |
|---|
| >gnl|CDD|233038 TIGR00593, pola, DNA polymerase I | Back alignment and domain information |
|---|
| >gnl|CDD|189028 cd09858, PIN_MKT1, PIN domain of Mkt1: A global regulator of mRNAs encoding mitochondrial proteins and eukaryotic homologs | Back alignment and domain information |
|---|
| >gnl|CDD|188620 cd09900, H3TH_XPG-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (archaeal), GEN1, YEN1, and XPG | Back alignment and domain information |
|---|
| >gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197623 smart00279, HhH2, Helix-hairpin-helix class 2 (Pol1 family) motifs | Back alignment and domain information |
|---|
| >gnl|CDD|188618 cd09898, H3TH_53EXO, H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|216458 pfam01367, 5_3_exonuc, 5'-3' exonuclease, C-terminal SAM fold | Back alignment and domain information |
|---|
| >gnl|CDD|237877 PRK14976, PRK14976, 5'-3' exonuclease; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188624 cd09904, H3TH_XPG, H3TH domain of Xeroderma pigmentosum complementation group G (XPG) nuclease, a structure-specific, divalent-metal-ion dependent, 5' nuclease | Back alignment and domain information |
|---|
| >gnl|CDD|188622 cd09902, H3TH_MKT1, H3TH domain of Mkt1: A global regulator of mRNAs encoding mitochondrial proteins and eukaryotic homologs | Back alignment and domain information |
|---|
| >gnl|CDD|188625 cd09905, H3TH_GEN1, H3TH domain of Gap Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| PTZ00217 | 393 | flap endonuclease-1; Provisional | 100.0 | |
| TIGR03674 | 338 | fen_arch flap structure-specific endonuclease. End | 100.0 | |
| KOG2519 | 449 | consensus 5'-3' exonuclease [Replication, recombin | 100.0 | |
| PRK03980 | 292 | flap endonuclease-1; Provisional | 100.0 | |
| cd00128 | 316 | XPG Xeroderma pigmentosum G N- and I-regions (XPGN | 100.0 | |
| KOG2518 | 556 | consensus 5'-3' exonuclease [Replication, recombin | 100.0 | |
| PRK14976 | 281 | 5'-3' exonuclease; Provisional | 100.0 | |
| TIGR00600 | 1034 | rad2 DNA excision repair protein (rad2). All prote | 100.0 | |
| smart00475 | 259 | 53EXOc 5'-3' exonuclease. | 100.0 | |
| COG0258 | 310 | Exo 5'-3' exonuclease (including N-terminal domain | 100.0 | |
| cd00008 | 240 | 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas | 100.0 | |
| TIGR00593 | 887 | pola DNA polymerase I. This family is based on the | 100.0 | |
| PRK05755 | 880 | DNA polymerase I; Provisional | 100.0 | |
| PRK09482 | 256 | flap endonuclease-like protein; Provisional | 100.0 | |
| KOG2520 | 815 | consensus 5'-3' exonuclease [Replication, recombin | 100.0 | |
| PHA00439 | 286 | exonuclease | 99.97 | |
| PHA02567 | 304 | rnh RnaseH; Provisional | 99.94 | |
| PF02739 | 169 | 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolv | 99.94 | |
| PF00867 | 94 | XPG_I: XPG I-region; InterPro: IPR006086 This entr | 99.91 | |
| PF00752 | 101 | XPG_N: XPG N-terminal domain; InterPro: IPR006085 | 99.89 | |
| smart00485 | 99 | XPGN Xeroderma pigmentosum G N-region. domain in n | 99.88 | |
| TIGR00600 | 1034 | rad2 DNA excision repair protein (rad2). All prote | 99.81 | |
| smart00484 | 73 | XPGI Xeroderma pigmentosum G I-region. domain in n | 99.78 | |
| cd00080 | 75 | HhH2_motif Helix-hairpin-helix class 2 (Pol1 famil | 99.58 | |
| PF01367 | 101 | 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold | 99.48 | |
| smart00279 | 36 | HhH2 Helix-hairpin-helix class 2 (Pol1 family) mot | 99.25 | |
| PF12813 | 246 | XPG_I_2: XPG domain containing | 98.97 | |
| PF03159 | 237 | XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: | 98.6 | |
| PF04599 | 425 | Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 P | 98.29 | |
| PHA03065 | 438 | Hypothetical protein; Provisional | 98.17 | |
| KOG2045 | 1493 | consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involve | 97.6 | |
| COG5049 | 953 | XRN1 5'-3' exonuclease [DNA replication, recombina | 97.39 | |
| COG5366 | 531 | Protein involved in propagation of M2 dsRNA satell | 96.99 | |
| PF05991 | 166 | NYN_YacP: YacP-like NYN domain; InterPro: IPR01029 | 96.25 | |
| TIGR00084 | 191 | ruvA Holliday junction DNA helicase, RuvA subunit. | 96.14 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 95.8 | |
| KOG2044 | 931 | consensus 5'-3' exonuclease HKE1/RAT1 [Replication | 95.56 | |
| PRK14605 | 194 | ruvA Holliday junction DNA helicase RuvA; Provisio | 94.43 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 94.29 | |
| PRK14600 | 186 | ruvA Holliday junction DNA helicase RuvA; Provisio | 94.02 | |
| PRK13901 | 196 | ruvA Holliday junction DNA helicase RuvA; Provisio | 93.45 | |
| COG0632 | 201 | RuvA Holliday junction resolvasome, DNA-binding su | 93.24 | |
| PRK14606 | 188 | ruvA Holliday junction DNA helicase RuvA; Provisio | 93.04 | |
| PRK14671 | 621 | uvrC excinuclease ABC subunit C; Provisional | 92.96 | |
| PRK14604 | 195 | ruvA Holliday junction DNA helicase RuvA; Provisio | 92.83 | |
| PF11977 | 155 | RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai | 92.78 | |
| PRK14603 | 197 | ruvA Holliday junction DNA helicase RuvA; Provisio | 92.77 | |
| PRK14601 | 183 | ruvA Holliday junction DNA helicase RuvA; Provisio | 92.4 | |
| PRK14667 | 567 | uvrC excinuclease ABC subunit C; Provisional | 91.44 | |
| PF10391 | 52 | DNA_pol_lambd_f: Fingers domain of DNA polymerase | 91.43 | |
| PF00633 | 30 | HHH: Helix-hairpin-helix motif; InterPro: IPR00044 | 91.4 | |
| TIGR00194 | 574 | uvrC excinuclease ABC, C subunit. This family cons | 91.38 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 91.2 | |
| PRK14669 | 624 | uvrC excinuclease ABC subunit C; Provisional | 91.15 | |
| PRK14602 | 203 | ruvA Holliday junction DNA helicase RuvA; Provisio | 91.13 | |
| PRK14670 | 574 | uvrC excinuclease ABC subunit C; Provisional | 91.06 | |
| PRK14672 | 691 | uvrC excinuclease ABC subunit C; Provisional | 89.08 | |
| COG2454 | 211 | Uncharacterized conserved protein [Function unknow | 87.09 | |
| PRK00558 | 598 | uvrC excinuclease ABC subunit C; Validated | 85.35 | |
| PRK14668 | 577 | uvrC excinuclease ABC subunit C; Provisional | 85.23 | |
| PRK14666 | 694 | uvrC excinuclease ABC subunit C; Provisional | 85.13 | |
| smart00278 | 26 | HhH1 Helix-hairpin-helix DNA-binding motif class 1 | 85.02 | |
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 84.99 | |
| PF02371 | 87 | Transposase_20: Transposase IS116/IS110/IS902 fami | 84.46 | |
| COG0322 | 581 | UvrC Nuclease subunit of the excinuclease complex | 81.93 | |
| PRK14601 | 183 | ruvA Holliday junction DNA helicase RuvA; Provisio | 81.38 | |
| COG1948 | 254 | MUS81 ERCC4-type nuclease [DNA replication, recomb | 81.09 |
| >PTZ00217 flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-88 Score=671.42 Aligned_cols=350 Identities=59% Similarity=1.008 Sum_probs=334.3
Q ss_pred CCccchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhc-cCCCcccCcCCCchhHHHHHHHHHHHHHHcC
Q 016711 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGR-TGTEMLTNEAGEVTSHLQGMFTRTIRLLEAG 79 (384)
Q Consensus 1 MGI~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~-~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~g 79 (384)
|||+||+++|++.+|.++++.+++.|+|++|||||++||||++++++. ..+.+|+|+.|++|+|++||++++++|+++|
T Consensus 1 MGI~gL~~~l~~~~p~~~~~~~l~~l~gk~vaIDa~~~lyr~~~a~~~~~~~~~l~~~~G~~t~~l~g~~~r~~~Ll~~g 80 (393)
T PTZ00217 1 MGIKGLSKFLADKAPNAIKEQELKNYFGRVIAIDASMALYQFLIAIRDDSQGGNLTNEAGEVTSHISGLFNRTIRLLEAG 80 (393)
T ss_pred CChhhHHHHHhhhccccccccCHHHhCCcEEEEeHHHHHHHHHHHcccccccccchhccCCccHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999974 3455799999999999999999999999999
Q ss_pred CceEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchH
Q 016711 80 MKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSE 159 (384)
Q Consensus 80 i~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~E 159 (384)
|+|+|||||.+|++|++++++|+++|+++++.+.++.+.|+.+++.++++|++.+|++|++.++++|+.||||||+||||
T Consensus 81 ikPv~VFDG~~p~~K~~~~~~Rk~~R~~a~~~l~~a~~~g~~~~a~k~~~r~~~vt~~~~~~~~~lL~~~Gip~i~AP~E 160 (393)
T PTZ00217 81 IKPVYVFDGKPPELKSGELEKRRERREEAEEELEKAIEEGDDEEIKKQSKRTVRVTKEQNEDAKKLLRLMGIPVIEAPCE 160 (393)
T ss_pred CCEEEEEcCCCchhhHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCceEECCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCCcceEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCCCC
Q 016711 160 AEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239 (384)
Q Consensus 160 ADa~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~~i 239 (384)
||||||+|++.|.+++|+|+|+|+|+||++.++++++..+..+.++++|+.+.+++.+|++++||+|+|+|+||||++||
T Consensus 161 Adaq~A~L~~~g~v~~ViS~D~D~l~fg~~~vi~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~iL~G~Dy~pgi 240 (393)
T PTZ00217 161 AEAQCAELVKKGKVYAVATEDMDALTFGTPVLLRNLNFSEAKKRPIQEINLSTVLEELGLSMDQFIDLCILCGCDYCDTI 240 (393)
T ss_pred HHHHHHHHHHCCCeEEEeCCCcCeeecCCcEEEEcccccccCCCCeEEEEHHHHHHHhCCCHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999876444455678999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhCCHHHHHHHHhhccCCCCCCCchHHHHHHhCCCCCCChhhhcccCCCCCCHHHHHHHHHHhcCCC
Q 016711 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 319 (384)
Q Consensus 240 ~giG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~~f~~~~~~f~ 319 (384)
||||||||++||++|+++|+|+++++..++.+|++|++.+++.+|++|.|..+.++ +|.|++||.++|++||+++++|+
T Consensus 241 ~GIG~ktA~~Li~~~gsle~il~~~~~~k~~~p~~~~~~~~~~~f~~p~V~~~~~~-~l~w~~pD~~~l~~fl~~e~~f~ 319 (393)
T PTZ00217 241 KGIGPKTAYKLIKKYKSIEEILEHLDKTKYPVPENFDYKEARELFLNPEVTPAEEI-DLKWNEPDEEGLKKFLVKEKNFN 319 (393)
T ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHhcCCCCCCCCChHHHHHHhcCCCcCCCCCC-CCCCCCCCHHHHHHHHHhccCCC
Confidence 99999999999999999999999999989999999999999999999999977666 79999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccccCcCcC
Q 016711 320 SDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 351 (384)
Q Consensus 320 ~~~v~~~~~~l~~~~~~~~q~~l~~ff~~~~~ 351 (384)
++||++.|+||+++.+..+|+|||+||++.++
T Consensus 320 ~~rv~~~i~rl~~~~~~~~Q~~l~~ff~~~~~ 351 (393)
T PTZ00217 320 EERVEKYIERLKKAKTKKTQTRLDSFFTATKK 351 (393)
T ss_pred HHHHHHHHHHHHHHhccCccCCHHHhcCCCCC
Confidence 99999999999999888899999999998765
|
|
| >TIGR03674 fen_arch flap structure-specific endonuclease | Back alignment and domain information |
|---|
| >KOG2519 consensus 5'-3' exonuclease [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK03980 flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
| >cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases | Back alignment and domain information |
|---|
| >KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14976 5'-3' exonuclease; Provisional | Back alignment and domain information |
|---|
| >TIGR00600 rad2 DNA excision repair protein (rad2) | Back alignment and domain information |
|---|
| >smart00475 53EXOc 5'-3' exonuclease | Back alignment and domain information |
|---|
| >COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes | Back alignment and domain information |
|---|
| >TIGR00593 pola DNA polymerase I | Back alignment and domain information |
|---|
| >PRK05755 DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >PRK09482 flap endonuclease-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG2520 consensus 5'-3' exonuclease [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PHA00439 exonuclease | Back alignment and domain information |
|---|
| >PHA02567 rnh RnaseH; Provisional | Back alignment and domain information |
|---|
| >PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities | Back alignment and domain information |
|---|
| >PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment | Back alignment and domain information |
|---|
| >PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer | Back alignment and domain information |
|---|
| >smart00485 XPGN Xeroderma pigmentosum G N-region | Back alignment and domain information |
|---|
| >TIGR00600 rad2 DNA excision repair protein (rad2) | Back alignment and domain information |
|---|
| >smart00484 XPGI Xeroderma pigmentosum G I-region | Back alignment and domain information |
|---|
| >cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif | Back alignment and domain information |
|---|
| >PF01367 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases | Back alignment and domain information |
|---|
| >smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs | Back alignment and domain information |
|---|
| >PF12813 XPG_I_2: XPG domain containing | Back alignment and domain information |
|---|
| >PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions | Back alignment and domain information |
|---|
| >PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses | Back alignment and domain information |
|---|
| >PHA03065 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG2045 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5049 XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] | Back alignment and domain information |
|---|
| >COG5366 Protein involved in propagation of M2 dsRNA satellite of L-A virus [General function prediction only] | Back alignment and domain information |
|---|
| >PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana | Back alignment and domain information |
|---|
| >TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit | Back alignment and domain information |
|---|
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
| >KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
|---|
| >PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14671 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes [] | Back alignment and domain information |
|---|
| >PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14667 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains | Back alignment and domain information |
|---|
| >PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] | Back alignment and domain information |
|---|
| >TIGR00194 uvrC excinuclease ABC, C subunit | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >PRK14669 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14670 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14672 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >COG2454 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK00558 uvrC excinuclease ABC subunit C; Validated | Back alignment and domain information |
|---|
| >PRK14668 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14666 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 | Back alignment and domain information |
|---|
| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
|---|
| >PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA | Back alignment and domain information |
|---|
| >COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 384 | ||||
| 1ul1_X | 379 | Crystal Structure Of The Human Fen1-Pcna Complex Le | 1e-115 | ||
| 3q8k_A | 341 | Crystal Structure Of Human Flap Endonuclease Fen1 ( | 1e-108 | ||
| 3q8m_A | 341 | Crystal Structure Of Human Flap Endonuclease Fen1 ( | 1e-107 | ||
| 1mc8_A | 343 | Crystal Structure Of Flap Endonuclease-1 R42e Mutan | 3e-63 | ||
| 1b43_A | 340 | Fen-1 From P. Furiosus Length = 340 | 9e-62 | ||
| 1a76_A | 326 | Flap Endonuclease-1 From Methanococcus Jannaschii L | 2e-57 | ||
| 2izo_A | 346 | Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex L | 3e-57 | ||
| 3ory_A | 363 | Crystal Structure Of Flap Endonuclease 1 From Hyper | 5e-56 | ||
| 1rxv_A | 336 | Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna | 2e-51 | ||
| 3qea_Z | 352 | Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) | 5e-17 | ||
| 3qe9_Y | 352 | Crystal Structure Of Human Exonuclease 1 Exo1 (D173 | 4e-16 | ||
| 1bgx_T | 832 | Taq Polymerase In Complex With Tp7, An Inhibitory F | 4e-08 | ||
| 1taq_A | 832 | Structure Of Taq Dna Polymerase Length = 832 | 5e-08 |
| >pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex Length = 379 | Back alignment and structure |
|
| >pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In Complex With Product 5'-Flap Dna, Sm3+, And K+ Length = 341 | Back alignment and structure |
| >pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a) In Complex With Substrate 5'-Flap Dna And K+ Length = 341 | Back alignment and structure |
| >pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From Pyrococcus Horikoshii Length = 343 | Back alignment and structure |
| >pdb|1B43|A Chain A, Fen-1 From P. Furiosus Length = 340 | Back alignment and structure |
| >pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii Length = 326 | Back alignment and structure |
| >pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex Length = 346 | Back alignment and structure |
| >pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From Hyperthermophilic Archaeon Desulfurococcus Amylolyticus Length = 363 | Back alignment and structure |
| >pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna Length = 336 | Back alignment and structure |
| >pdb|3QEA|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In Complex With Dna (Complex Ii) Length = 352 | Back alignment and structure |
| >pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In Complex With Dna (Complex I) Length = 352 | Back alignment and structure |
| >pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab Length = 832 | Back alignment and structure |
| >pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 Length = 379 | Back alignment and structure |
|---|
Score = 461 bits (1187), Expect = e-163
Identities = 210/383 (54%), Positives = 284/383 (74%), Gaps = 5/383 (1%)
Query: 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEV 61
GI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGET 59
Query: 62 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 121
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG +
Sbjct: 60 TSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAE 119
Query: 122 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 181
+++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDM
Sbjct: 120 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM 179
Query: 182 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241
D LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIRG
Sbjct: 180 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG 239
Query: 242 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 301
IG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPE V D E +++KWS
Sbjct: 240 IGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPE-VLDPESVELKWS 298
Query: 302 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEP 361
P+EE LI F+ E F+ +R+ ++++ ++ S+QGRL+ FFK + S KRKEP
Sbjct: 299 EPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLS-SAKRKEP 357
Query: 362 ENTPKATTNKKSKAGGGGGRKRK 384
E PK +T KK+K G G KR
Sbjct: 358 E--PKGSTKKKAKTGAAGKFKRG 378
|
| >3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* Length = 341 | Back alignment and structure |
|---|
| >3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} Length = 363 | Back alignment and structure |
|---|
| >1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Length = 326 | Back alignment and structure |
|---|
| >1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Length = 336 | Back alignment and structure |
|---|
| >1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A Length = 340 | Back alignment and structure |
|---|
| >2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} Length = 346 | Back alignment and structure |
|---|
| >3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z* Length = 352 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A Length = 290 | Back alignment and structure |
|---|
| >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Length = 832 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| 3q8k_A | 341 | Flap endonuclease 1; helix-3 turn-helix, hydrophob | 100.0 | |
| 1ul1_X | 379 | Flap endonuclease-1; protein complex, DNA-binding | 100.0 | |
| 3ory_A | 363 | Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco | 100.0 | |
| 1b43_A | 340 | Protein (FEN-1); nuclease, DNA repair, DNA replica | 100.0 | |
| 1a76_A | 326 | Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea | 100.0 | |
| 1rxw_A | 336 | Flap structure-specific endonuclease; helical clam | 100.0 | |
| 2izo_A | 346 | FEN1, flap structure-specific endonuclease; hydrol | 100.0 | |
| 3qe9_Y | 352 | Exonuclease 1; exonuclease, hydrolase-DNA complex; | 100.0 | |
| 1exn_A | 290 | 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Ent | 100.0 | |
| 1bgx_T | 832 | TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi | 100.0 | |
| 3h7i_A | 305 | Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonu | 99.97 | |
| 2y35_A | 1140 | LD22664P; hydrolase-DNA complex, RNA degradation, | 98.77 | |
| 3pie_A | 1155 | 5'->3' exoribonuclease (XRN1); beta berrel, tudor | 98.66 | |
| 3fqd_A | 899 | Protein DHP1, 5'-3' exoribonuclease 2; protein-pro | 98.4 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 96.74 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 96.33 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 95.13 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 95.0 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 94.99 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 94.56 | |
| 2nrt_A | 220 | Uvrabc system protein C; UVRC, endonuclease, RNAse | 94.29 | |
| 3c65_A | 226 | Uvrabc system protein C; UVRC, endonuclease, nucle | 91.53 | |
| 2bgw_A | 219 | XPF endonuclease; hydrolase, structure specific en | 88.85 | |
| 1ixr_A | 191 | Holliday junction DNA helicase RUVA; heterooligome | 88.37 | |
| 4gfj_A | 685 | Topoisomerase V; helix-hairpin-helix, DNA repair e | 87.38 | |
| 3v32_B | 185 | Ribonuclease ZC3H12A; rossmann-like sandwich fold, | 86.82 | |
| 1cuk_A | 203 | RUVA protein; DNA repair, SOS response, DNA-bindin | 85.59 | |
| 3v33_A | 223 | Ribonuclease ZC3H12A; rossmann-like sandwich fold, | 82.52 |
| >3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-83 Score=624.43 Aligned_cols=341 Identities=55% Similarity=0.987 Sum_probs=324.3
Q ss_pred CccchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCCc
Q 016711 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81 (384)
Q Consensus 2 GI~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi~ 81 (384)
||+|||++|++.+|.++++.++++|+|++|+||||+|+||+||+++ .++.+|+++.|.+|+|++||++++++|++++++
T Consensus 1 GI~GL~~~l~~~~p~~~~~~~l~~l~gk~l~IDgs~~lyr~~~a~~-~~~~~l~~~~G~~T~al~g~~~~~~~ll~~~i~ 79 (341)
T 3q8k_A 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVR-QGGDVLQNEEGETTSHLMGMFYRTIRMMENGIK 79 (341)
T ss_dssp CCTTHHHHHHHHCGGGEEEEEGGGGTTCEEEEEHHHHHHHHHHHCE-ETTEECBCTTSCBCHHHHHHHHHHHHHHTTTCE
T ss_pred CchhHHHHHHHhhhhccccccHHHhCCCEEEEecHHHHHHHHHccc-cccCCCCCCCCCCchHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999999999999999999999999999999987 345689999999999999999999999988999
Q ss_pred eEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchHHH
Q 016711 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAE 161 (384)
Q Consensus 82 Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~EAD 161 (384)
|+|||||.+|++|++++++||++|.++.+.+.++.+.|+.+++.+|+++++.||+.|++.++++|++|||||++||||||
T Consensus 80 P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~EAD 159 (341)
T 3q8k_A 80 PVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAE 159 (341)
T ss_dssp EEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSSCHH
T ss_pred ceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCCcceEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCCC
Q 016711 162 AQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241 (384)
Q Consensus 162 a~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~~i~g 241 (384)
||||+|++.|.+++|+|+|+|++||++++|++++...+.++.++..|+.+.+++.+|++|+||+|+|+|+||||+|||||
T Consensus 160 d~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~~gipG 239 (341)
T 3q8k_A 160 ASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG 239 (341)
T ss_dssp HHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSCCCTT
T ss_pred HHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCC
Confidence 99999999999999999999999999999988875443444567899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhCCHHHHHHHHhhccCCCCCCCchHHHHHHhCCCCCCChhhhcccCCCCCCHHHHHHHHHHhcCCCHH
Q 016711 242 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321 (384)
Q Consensus 242 iG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~~f~~~~~~f~~~ 321 (384)
||||||++||++|||+|+|++++++.+.++|++|++.+++++|++|+|+++.+ .+|.|+.||.++|++||+++++|+++
T Consensus 240 iG~KtA~kll~~~gsle~i~~~~~~~k~~~~~~~~~~~~r~l~l~~~V~~~~~-~~l~~~~pd~~~l~~fl~~~~~f~~~ 318 (341)
T 3q8k_A 240 IGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPES-VELKWSEPNEEELIKFMCGEKQFSEE 318 (341)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHHSCTTTSCCCTTCCHHHHHHHHHSCCCCCTTT-SCCCCCCCCHHHHHHHHTTTTCCCHH
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHhcCCCCCcccchHHHHHHhCCCCCCCCcc-cccCCCCCCHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999998766 48999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCccccccC
Q 016711 322 RVTKAIEKIKAAKNKSSQGRLESFFK 347 (384)
Q Consensus 322 ~v~~~~~~l~~~~~~~~q~~l~~ff~ 347 (384)
||+++++||+++++ |++||+||.
T Consensus 319 rv~~~~~~l~~~~~---~~~l~~~~~ 341 (341)
T 3q8k_A 319 RIRSGVKRLSKSRQ---GSTLEVLFQ 341 (341)
T ss_dssp HHHHHHHHHHHHHH---HHCCCCCCC
T ss_pred HHHHHHHHHHHHhc---cCcHhhhcC
Confidence 99999999998875 999999993
|
| >1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 | Back alignment and structure |
|---|
| >3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} | Back alignment and structure |
|---|
| >1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A | Back alignment and structure |
|---|
| >1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A | Back alignment and structure |
|---|
| >1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A | Back alignment and structure |
|---|
| >2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z* | Back alignment and structure |
|---|
| >1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A | Back alignment and structure |
|---|
| >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* | Back alignment and structure |
|---|
| >3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A | Back alignment and structure |
|---|
| >2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A | Back alignment and structure |
|---|
| >3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A | Back alignment and structure |
|---|
| >3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
| >2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A | Back alignment and structure |
|---|
| >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 | Back alignment and structure |
|---|
| >4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
| >3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A | Back alignment and structure |
|---|
| >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A | Back alignment and structure |
|---|
| >3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 384 | ||||
| d1ul1x2 | 216 | c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuc | 3e-69 | |
| d1a77a2 | 207 | c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuc | 4e-59 | |
| d1rxwa2 | 217 | c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuc | 4e-59 | |
| d1b43a2 | 219 | c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuc | 8e-59 | |
| d1ul1x1 | 140 | a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nu | 3e-46 | |
| d1b43a1 | 120 | a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nu | 9e-43 | |
| d1a77a1 | 108 | a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nu | 2e-34 | |
| d1rxwa1 | 105 | a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nu | 1e-32 | |
| d1cmwa1 | 116 | a.60.7.1 (A:174-289) 5' to 3' exonuclease domain o | 5e-06 | |
| d1xo1a1 | 105 | a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacterioph | 2e-05 | |
| d1kfta_ | 56 | a.60.2.3 (A:) Excinuclease UvrC C-terminal domain | 0.003 | |
| d1x2ia1 | 68 | a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF201 | 0.004 |
| >d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PIN domain-like superfamily: PIN domain-like family: 5' to 3' exonuclease catalytic domain domain: Flap endonuclease-1 (Fen-1 nuclease) species: Human (Homo sapiens) [TaxId: 9606]
Score = 215 bits (548), Expect = 3e-69
Identities = 133/216 (61%), Positives = 172/216 (79%), Gaps = 1/216 (0%)
Query: 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEV 61
GI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGET 59
Query: 62 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 121
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG +
Sbjct: 60 TSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAE 119
Query: 122 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 181
+++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDM
Sbjct: 120 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM 179
Query: 182 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL 217
D LTFG+P +RHL ++K+P+ EF +++IL+EL
Sbjct: 180 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQEL 215
|
| >d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 207 | Back information, alignment and structure |
|---|
| >d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 217 | Back information, alignment and structure |
|---|
| >d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 219 | Back information, alignment and structure |
|---|
| >d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Length = 140 | Back information, alignment and structure |
|---|
| >d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 120 | Back information, alignment and structure |
|---|
| >d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 108 | Back information, alignment and structure |
|---|
| >d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 105 | Back information, alignment and structure |
|---|
| >d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Length = 116 | Back information, alignment and structure |
|---|
| >d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Length = 105 | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Length = 56 | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 68 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| d1ul1x2 | 216 | Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo | 100.0 | |
| d1rxwa2 | 217 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc | 100.0 | |
| d1a77a2 | 207 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met | 100.0 | |
| d1b43a2 | 219 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr | 100.0 | |
| d1b43a1 | 120 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr | 100.0 | |
| d1ul1x1 | 140 | Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo | 99.97 | |
| d1a77a1 | 108 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met | 99.94 | |
| d1rxwa1 | 105 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc | 99.94 | |
| d1cmwa2 | 164 | 5' to 3' exonuclease domain of DNA polymerase Taq | 99.91 | |
| d1xo1a2 | 167 | T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] | 99.77 | |
| d1tfra2 | 169 | T4 RNase H {Bacteriophage T4 [TaxId: 10665]} | 99.74 | |
| d1cmwa1 | 116 | 5' to 3' exonuclease domain of DNA polymerase Taq | 99.53 | |
| d1xo1a1 | 105 | T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] | 99.28 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 96.98 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 96.71 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 96.44 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 96.32 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 95.49 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 95.27 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 94.61 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 94.05 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 93.97 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 93.44 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 92.82 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 92.75 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 92.04 | |
| d1dgsa1 | 181 | NAD+-dependent DNA ligase, domain 3 {Thermus filif | 87.77 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 87.42 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 86.01 | |
| d2csba3 | 55 | Topoisomerase V {Methanopyrus kandleri [TaxId: 232 | 85.9 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 81.96 |
| >d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PIN domain-like superfamily: PIN domain-like family: 5' to 3' exonuclease catalytic domain domain: Flap endonuclease-1 (Fen-1 nuclease) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-46 Score=344.13 Aligned_cols=216 Identities=61% Similarity=1.036 Sum_probs=166.7
Q ss_pred CccchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCCc
Q 016711 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81 (384)
Q Consensus 2 GI~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi~ 81 (384)
||+|||+||++.+|.++++.++++++|++|+||||+||||++++++. .+..+.+..|.++.++.+++.++..|+++||+
T Consensus 1 GIkgL~~~l~~~~~~~i~~~~l~~l~gk~vaIDas~~l~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~I~ 79 (216)
T d1ul1x2 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQ-GGDVLQNEEGETTSHLMGMFYRTIRMMENGIK 79 (216)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC--------------CCHHHHHHHHHHHHHHHTTCC
T ss_pred CcchHHHHHHHhCcCceEEecHHHcCCCEEEEEeHHHHHHHHHHhcc-ccchhhccCCCCcHHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999988764 34567888899999999999999999999999
Q ss_pred eEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchHHH
Q 016711 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAE 161 (384)
Q Consensus 82 Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~EAD 161 (384)
|||||||.+|+.|.++..+|+.+|.++...+..+...++..++.++.++...+++.++..++++|+.+||||++||||||
T Consensus 80 pifVFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ll~~~gv~~i~Ap~EAd 159 (216)
T d1ul1x2 80 PVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAE 159 (216)
T ss_dssp EEEEECCSCCSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSSCHH
T ss_pred EEEEEcCCCCccccchhhhhhhhHHHhhhhHHhhhhcchHHHHHHhhccCeeccHHHHHHHHHHHHhcCeeeEeccchHH
Confidence 99999999999999999999999998888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCCcceEEEeHHHHHHHhC
Q 016711 162 AQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN 218 (384)
Q Consensus 162 a~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v~~~~g 218 (384)
+|||+|++.|.|++|+|+|||+|+||++.|++++...+.++.++.+|+++++++.+|
T Consensus 160 aq~A~L~~~g~vd~v~S~DsD~l~fG~~~vi~~~~~~~~~~~~~~~~~~~~il~~LG 216 (216)
T d1ul1x2 160 ASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELG 216 (216)
T ss_dssp HHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHT
T ss_pred HHHHHHHhcCceEEEEccccceeccCCcEEEEecccccCCCCcEEEEEHHHHHHhcC
Confidence 999999999999999999999999999999999987666677899999999999987
|
| >d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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| >d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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| >d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} | Back information, alignment and structure |
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| >d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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| >d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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| >d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} | Back information, alignment and structure |
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| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
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| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
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| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
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| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
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| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
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