Citrus Sinensis ID: 016715

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV
Secondary Structure (PSIPRED)
cccccHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEcccHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEEccccHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHcccccccccEEEEHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccEHHHEccccccccccccccccccccccccccEEEcccHHcccHHHHHHHHHHHcccHEHHccccccccHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHcccEEEEEEcHHHHHHHHHcccccccEEEEEccEEEEcHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEEEEEEcccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQmyglssngeragrqnqnrhriaMTTSTLLvfqnpllpkptrpahssiagvQKGAASACIVCARSQDDDYHATIKALnskgrfprkslgqhymlNSEINDQLAAAAAVQEGDivleigpgtgsLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVvanipfnisTDVIkqllpmgdIFSEVVLLLQEETALRlvepslrtseyrpinifvnfysepeykfkvprtnffpqpkvDAAVVTFKlkqatdypavtstKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKalgdvglpatsrpeeltlddFVKLHNLIVQV
Flexible Loop (DISEMBL)
mgelvaevgckslterqVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKalnskgrfprKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRlvepslrtseyrpiNIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSrpeeltlddfvKLHNLIVQV
Low Complexity Region (SEG)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV
Disordered region (IsUnstruct)
****VAEVGCKSLTERQVVSVIYRILGTYCSQMYGL****************IAMTTSTLLVFQNPLL**********IAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPAT****ELTLDDFVKLHNLIV**
Disordered Region (DISOPRED)
**ELVAEVGCKSLTERQVVSVIYRILGTYCSQMY******************IAMTTSTLLVFQNP***************************************KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV
Disordered Region (DISEMBL)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPT***************SACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV
Disordered Region (DISPRO)
*GELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGL*************RHRIAMTTSTLLVFQNPLLPKPT*****************CIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q6ME80	284	Ribosomal RNA small subun	yes	no	0.677	0.915	0.384	1e-44
Q253R6	284	Ribosomal RNA small subun	yes	no	0.656	0.887	0.344	2e-34
Q823V2	278	Ribosomal RNA small subun	yes	no	0.664	0.917	0.346	2e-34
Q9Z6K0	277	Ribosomal RNA small subun	yes	no	0.653	0.906	0.337	2e-34
Q5L6H5	278	Ribosomal RNA small subun	yes	no	0.664	0.917	0.349	6e-34
Q2RME8	288	Ribosomal RNA small subun	yes	no	0.705	0.940	0.322	4e-33
Q65PH9	292	Ribosomal RNA small subun	yes	no	0.708	0.931	0.332	2e-32
Q9PK40	277	Ribosomal RNA small subun	yes	no	0.703	0.974	0.312	2e-32
Q74LI0	296	Ribosomal RNA small subun	yes	no	0.674	0.875	0.357	2e-32
Q8YS62	271	Ribosomal RNA small subun	yes	no	0.677	0.959	0.330	3e-32

>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/276 (38%), Positives = 164/276 (59%), Gaps = 16/276 (5%)

Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           LN  G FP+K L Q+++++  I  ++  A+ VQ G++VLEIGPG GSLT  +L   A V+
Sbjct: 13  LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72

Query: 168 AIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
           A+EKD     L RE  RF +   QL++  ED +   +   + S    R      AKV+AN
Sbjct: 73  AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125

Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPE 283
           +P++++T ++ +++    +FS + +++QEE A R+   P    S+Y    IF+NFYS+P 
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYSKPR 183

Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
           Y F V R  F+P PKVD+A+V  +LK+    P     + FF +  +AF  +RKMLR SL+
Sbjct: 184 YGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAFEQRRKMLRASLK 240

Query: 344 HLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 379
            L    +I  AL  +G    +RPE L+L+DF+KL++
Sbjct: 241 SLFDPSKISNALEIIGQNPQARPEVLSLEDFIKLYH 276

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
Protochlamydia amoebophila (strain UWE25) (taxid: 264201)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 8EC: 2

>sp|Q253R6|RSMA_CHLFF Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila felis (strain Fe/C-56) GN=rsmA PE=3 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 155/270 (57%), Gaps = 18/270 (6%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P+K L Q+++++  I  ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+EKD  
Sbjct: 26  PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 84

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
              +  E   ++ QL +  E    C      L    + K   G  +VVAN+P++I+T ++
Sbjct: 85  ---MFEE---TLKQLPIDLEITDACKYPLSQL----QEKGWQGKGRVVANLPYHITTPLL 134

Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
            +L L + + +  + +++Q+E A R+  +P     EY  + IF+ F+++  Y FKV    
Sbjct: 135 TKLFLEVPNQWKTITVMMQDEVARRITAQPG--GKEYGSLTIFLQFFADVRYAFKVSSGC 192

Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI 351
           FFP+P+V +AVV   +K    +P   S  K FFS+  +AF  +RK+L  +L++L     +
Sbjct: 193 FFPKPQVSSAVVHMTVKDT--FPLEESLHKKFFSLTRAAFGQRRKLLANALKNLYPKDLV 250

Query: 352 EKALGDVGLPATSRPEELTLDDFVKLHNLI 381
             AL  +     +RPE L+LD+++KL  L+
Sbjct: 251 FSALNQLNFSEKTRPETLSLDEYLKLFQLL 280

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Chlamydophila felis (strain Fe/C-56) (taxid: 264202)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila caviae (strain GPIC) GN=rsmA PE=3 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/274 (34%), Positives = 159/274 (58%), Gaps = 19/274 (6%)

Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
           +GR P+K L Q+++++  I  ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+E
Sbjct: 17  QGR-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALE 75

Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
           KD              + LK L  D        + LS  E  K   G  +VVAN+P++I+
Sbjct: 76  KDPMFE----------ETLKQLPIDLEITDACKYPLSQLE-EKGWQGKGRVVANLPYHIT 124

Query: 231 TDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
           T ++ +L L + + +  V +++Q+E A R+  +P  +  EY  + IF+ F+++  Y FKV
Sbjct: 125 TPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKV 182

Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCT 347
               FFP+P+V +AVV   +K+   +P  TS  + FFS+  +AF  +RK+L  +L+ L  
Sbjct: 183 SPGCFFPKPQVSSAVVHMTVKET--FPLETSLHQKFFSLTRAAFGQRRKLLANALKDLYP 240

Query: 348 SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
              +  AL  +     +RPE L+L+++++L +L+
Sbjct: 241 KELVFSALNQLNFSEKTRPETLSLNEYLQLFHLL 274

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Chlamydophila caviae (strain GPIC) (taxid: 227941)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q9Z6K0|RSMA_CHLPN Ribosomal RNA small subunit methyltransferase A OS=Chlamydia pneumoniae GN=rsmA PE=3 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 156/267 (58%), Gaps = 16/267 (5%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P+KSL Q+++++  I  ++ A + V   D VLEIGPG G+LT  L+ AGA V+AIEKD  
Sbjct: 20  PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
                     S+++L +  E    C      L  ++    + G  +VVAN+P++I+T ++
Sbjct: 80  FA-------PSLEELPIRLEIIDACKYPLDQLQEYK----TLGKGRVVANLPYHITTPLL 128

Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
            +L L   D +  V +++Q+E A R+V +P  R  +Y  + IF+ F+++  Y FKV  + 
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGR--DYGSLTIFLQFFADIHYAFKVSASC 186

Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
           F+P+P+V +AV+  K+K+     +      FF++  +AF  +RK+L  +L+ L    ++E
Sbjct: 187 FYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAFQQRRKVLANTLKGLYPKEQVE 245

Query: 353 KALGDVGLPATSRPEELTLDDFVKLHN 379
           +AL ++GL    RPE L+L+D++ L +
Sbjct: 246 QALKELGLLLNVRPEVLSLNDYLALFH 272

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Chlamydia pneumoniae (taxid: 83558)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q5L6H5|RSMA_CHLAB Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila abortus (strain S26/3) GN=rsmA PE=3 SV=1

 Score =  145 bits (366), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 155/272 (56%), Gaps = 17/272 (6%)

Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
           GR P+K L Q+++++  I  ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EK
Sbjct: 18  GR-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEK 76

Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
           D     ++ E   ++ QL +  E    C      L    + +   G  +VVAN+P++I+T
Sbjct: 77  D----SMLEE---TLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITT 125

Query: 232 DVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
            ++++L L   + +  V +++Q+E A R+  +P     EY  + IF+ F+ +  Y FKV 
Sbjct: 126 PLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVS 183

Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
              F P+P+V +AVV   +K+         TK FFS+  +AF  +RK+L  +L+ L    
Sbjct: 184 PGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKE 242

Query: 350 EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
            + +AL  +     +RPE L+LDD++KL  L+
Sbjct: 243 RVFEALSQLHFSDKTRPETLSLDDYLKLFYLL 274

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Chlamydophila abortus (strain S26/3) (taxid: 218497)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1

 Score =  142 bits (359), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 146/276 (52%), Gaps = 5/276 (1%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T+  +  KG  PRKS GQ++++++ I  ++A AA V  GD V+EIGPG G+LT  L    
Sbjct: 10  TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
             V+AIE D+ +   + E  A  D ++++  D +K      +  +    +      KVVA
Sbjct: 70  GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEP 282
           N+P+ I+T ++  LL      +E+VL++Q E   R L  P     +Y  +++ V +Y+EP
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYTEP 187

Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
               KVPRT F+P+P+VD+ V+    +       V     FF +V +AFN +RK +  +L
Sbjct: 188 AVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAFNQRRKTILNAL 246

Query: 343 QHLC-TSLEIEKALGDVGLPATSRPEELTLDDFVKL 377
             L     +I +AL   G+    R E L +++F  +
Sbjct: 247 GSLGFEKSKIMEALAGAGIDPRRRGETLGMEEFASI 282

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q65PH9|RSMA_BACLD Ribosomal RNA small subunit methyltransferase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 159/289 (55%), Gaps = 17/289 (5%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T + LN  G   +KSLGQ++++++ I D++   A V E   V+EIGPG G+LT  L    
Sbjct: 11  TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRA 70

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
             V A E DQ ++ ++ +  +  D + V+ +D +K  +R+ M   F+          VVA
Sbjct: 71  KKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVA 126

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
           N+P+ ++T +I +LL        +V++LQ+E A R+  +PS  + EY  ++I V FY+E 
Sbjct: 127 NLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEA 184

Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRK 340
           +    VP+T F PQP VD+AV+   L++    PAV    +  FF +V ++F  +RK L  
Sbjct: 185 KTVMNVPKTVFVPQPNVDSAVIRLTLRKE---PAVAVQDAAFFFQVVKASFAQRRKTLFN 241

Query: 341 SL-QHLCTSLE----IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
           +L  +L    E    IE+AL D  +    R E L++++F  L + + +V
Sbjct: 242 NLVNNLPNGKENKSKIERALQDSHIDGKRRGESLSIEEFAVLSDRLREV 290

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q9PK40|RSMA_CHLMU Ribosomal RNA small subunit methyltransferase A OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rsmA PE=3 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 167/291 (57%), Gaps = 21/291 (7%)

Query: 94  ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
           ARS  +   + +K++N + +   K+L Q+++++  I  ++ A A VQ GD VLEIGPG G
Sbjct: 2   ARSSIEQLTSFLKSVNGRAK---KALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFG 58

Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
           +L+ VL++ GA V+A+EKD            S+ QL +  E    C  +  + SL +  K
Sbjct: 59  ALSEVLVSQGANVIALEKDPMFE-------ESLSQLPIDIEITDAC--KYPLASLDD--K 107

Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
              G  ++VAN+P++I+T ++ K  L   + +  V +++Q+E A R+   P     +Y  
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPNRWKTVTVMIQDEVARRITANPG--DKDYSS 165

Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTS-TKSFFSMVSSA 330
           + +F+ F+++ +Y FKV    F+P+P V +AVV  ++ +  D+P   S    FF++  +A
Sbjct: 166 LTVFLRFFADVQYAFKVSPNCFYPKPSVSSAVVHMRVHE--DFPLSGSEIDEFFALTRAA 223

Query: 331 FNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
           F  +RK+L  SL++L    ++ + L  +G    +RPE ++L++++K+  L+
Sbjct: 224 FGQRRKLLANSLKNLYPKDKVFQVLEHLGFSEKTRPETISLEEYLKIFRLL 274

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q74LI0|RSMA_LACJO Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rsmA PE=3 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/274 (35%), Positives = 147/274 (53%), Gaps = 15/274 (5%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           +K+LGQ+++++      +  AA +Q GD V+EIGPG GSLT  LL AGA VLA E DQ +
Sbjct: 25  KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84

Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
             ++              D+ K++ +D +K +         +  KS     K+VAN+P+ 
Sbjct: 85  PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140

Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
           I+T +I  L+     FS + L++Q+E A RLV    +T EY P++I V          +V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEV 199

Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
             T+F P+PKVD+AVV   L    + P +     F  +V   F  +RK L  +L+ L   
Sbjct: 200 KSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCFAQRRKTLANNLKTLIKD 257

Query: 349 L-EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
             E EK + D+GL    RPEELTL+ FV+L +L+
Sbjct: 258 KDEREKLINDLGLDVRVRPEELTLNQFVQLAHLL 291

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) (taxid: 257314)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q8YS62|RSMA_NOSS1 Ribosomal RNA small subunit methyltransferase A OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rsmA PE=3 SV=1

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/272 (33%), Positives = 152/272 (55%), Gaps = 12/272 (4%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           PRK   QH++ + +  D +  AA     D +LEIGPGTG LT  LL A  +++A+E D+ 
Sbjct: 4   PRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPAVQSLVAVEIDRD 63

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  L+ ++    +   +LQ DF+   + +++ S  + +K +    KVVANIP+NI+  +I
Sbjct: 64  LCELLAKQLGKKENFLLLQGDFLTIDLAANLGSFPKFQKPN----KVVANIPYNITGPII 119

Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
           ++LL     P  + F  +VLL+Q+E A RL   S  +  +  +++ V + ++ E+   VP
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLIQKEVAERLYAKS-GSRTFGALSVRVQYLADCEFICDVP 178

Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
            + F P PKVD+AVV  + +Q  + P V   K   ++V   F  KRKMLR +LQ +    
Sbjct: 179 ASAFHPPPKVDSAVVRLRPRQ-IEIP-VNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRD 236

Query: 350 EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
            + + L  + +   +R E+++   +VKL NL+
Sbjct: 237 RLSQLLEQLNINPQARAEDISTQQWVKLANLL 268

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
225453766	335	PREDICTED: ribosomal RNA small subunit m	0.763	0.874	0.797	1e-138
297842936	342	hypothetical protein ARALYDRAFT_470090 [	0.757	0.850	0.785	1e-135
15220982	343	Ribosomal RNA adenine dimethylase family	0.763	0.854	0.780	1e-135
449432199	347	PREDICTED: ribosomal RNA small subunit m	0.742	0.821	0.805	1e-133
255541450	338	dimethyladenosine transferase, putative	0.815	0.926	0.739	1e-133
356568329	341	PREDICTED: ribosomal RNA small subunit m	0.851	0.958	0.707	1e-133
356532056	341	PREDICTED: ribosomal RNA small subunit m	0.822	0.926	0.730	1e-132
357507115	349	Ribosomal RNA small subunit methyltransf	0.763	0.839	0.732	1e-125
300681318	343	dimethyladenosine transferase [Sorghum b	0.744	0.833	0.656	1e-111
294464127	351	unknown [Picea sitchensis]	0.791	0.866	0.644	1e-110

>gi|225453766|ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis vinifera] gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/297 (79%), Positives = 265/297 (89%), Gaps = 4/297 (1%)

Query: 90  CIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149
           CI CARSQDD YHAT+ ALNSKGR PRKSLGQHYMLNS IN+QLA  A +++GD++LEIG
Sbjct: 39  CITCARSQDD-YHATLDALNSKGRTPRKSLGQHYMLNSSINEQLADTADIRDGDVILEIG 97

Query: 150 PGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209
           PGTGSLTNVLL+AGATVLAIEKD HM  LVRERFA  D+LKVLQEDF+KCHI  H+ SL 
Sbjct: 98  PGTGSLTNVLLDAGATVLAIEKDAHMAALVRERFAVTDRLKVLQEDFMKCHIHPHLFSLL 157

Query: 210 ERRKS---SSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT 266
           E +K+    S +AKVV+NIPFNISTDV+K LLPMGDIFSEVVLLLQ+ETALRLVE SLRT
Sbjct: 158 ESKKAKNKESRYAKVVSNIPFNISTDVVKILLPMGDIFSEVVLLLQDETALRLVEASLRT 217

Query: 267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSM 326
            EYRPINIFVNFYS+PEYKFKVPRTNFFPQP VDAAVV FKLKQA DYP V+S KSFFS+
Sbjct: 218 QEYRPINIFVNFYSDPEYKFKVPRTNFFPQPNVDAAVVVFKLKQAVDYPPVSSIKSFFSL 277

Query: 327 VSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
           V+SAFNGKRKMLR+SLQH+CTS+EIE+AL +VGLPATSRPEELTLDDFV+LHNLIV+
Sbjct: 278 VNSAFNGKRKMLRRSLQHICTSIEIEEALRNVGLPATSRPEELTLDDFVRLHNLIVK 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/294 (78%), Positives = 260/294 (88%), Gaps = 3/294 (1%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 46  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 105

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 106 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 165

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 166 SRRLSHPDSSLAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 225

Query: 268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           EYRPINI +NFYSEPEY F+VPR NFFPQPKVDAAVVTFKLK  +DYP V+STK+FFS+V
Sbjct: 226 EYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPSDYPDVSSTKNFFSLV 285

Query: 328 SSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
           +SAFNGKRKMLRKSLQH+ +S EIEKALG  GLP TSRPEELTLDDFVKLHN+I
Sbjct: 286 NSAFNGKRKMLRKSLQHISSSPEIEKALGVAGLPVTSRPEELTLDDFVKLHNVI 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220982|ref|NP_171690.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana] gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/296 (78%), Positives = 261/296 (88%), Gaps = 3/296 (1%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query: 268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
           EYRPINI +NFYSEPEY F+VPR NFFPQPKVDAAVVTFKLK   DYP V+STK+FFS+V
Sbjct: 227 EYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKNFFSLV 286

Query: 328 SSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
           +SAFNGKRKMLRKSLQH+ +S +IEKALG  GLPATSRPEELTLDDFVKLHN+I +
Sbjct: 287 NSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKLHNVIAR 342

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432199|ref|XP_004133887.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Cucumis sativus]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/288 (80%), Positives = 260/288 (90%), Gaps = 3/288 (1%)

Query: 99  DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
           DDYH+TI+ALNSKGR PRKSLGQHYMLNS IN+QLAAAA V+EGD+VLEIGPGTGSLTNV
Sbjct: 59  DDYHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNV 118

Query: 159 LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF---ERRKSS 215
           L+N+GATVLA+EKD +M GLV ERFA+ ++LKVL EDFVKC++ SHM+SL    E  ++ 
Sbjct: 119 LINSGATVLAVEKDSYMAGLVDERFANTNRLKVLNEDFVKCNVSSHMMSLLKSIELSEAR 178

Query: 216 SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIF 275
           S  AKVV+NIPFNISTD+IKQLLPMGDIFSEVVLLLQEE ALRLVE SLRTSEYRPIN+F
Sbjct: 179 SQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEEAALRLVETSLRTSEYRPINVF 238

Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKR 335
           VNFYS+PE KFKVPRTNFFPQP VDAAVV+FKLK+A DYPAV+STKSFFSMV+SAFNGKR
Sbjct: 239 VNFYSDPELKFKVPRTNFFPQPNVDAAVVSFKLKRAADYPAVSSTKSFFSMVNSAFNGKR 298

Query: 336 KMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
           KMLRKSLQH+CTSLEIEKAL D  L  TSRPEEL+LDDFVKLHNLIV+
Sbjct: 299 KMLRKSLQHICTSLEIEKALEDSSLLPTSRPEELSLDDFVKLHNLIVK 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/319 (73%), Positives = 266/319 (83%), Gaps = 6/319 (1%)

Query: 70  KPTRPAHSSIAGVQKGAASACIVC-ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSE 128
           KP+ P+ + I   +K      I C  +   DDY AT+KALNS+GR PRKSLGQHYMLNSE
Sbjct: 22  KPSVPSRNGITSARK--KRVLIRCDTKRSSDDYRATLKALNSRGRRPRKSLGQHYMLNSE 79

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
           +N+QL  AA V+EGD+VLEIGPGTGSLTN+LL+ GATVLAIEKD HM  +VRERF+  D+
Sbjct: 80  VNEQLVCAANVEEGDLVLEIGPGTGSLTNLLLDTGATVLAIEKDAHMAAIVRERFSHTDR 139

Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKS---SSGFAKVVANIPFNISTDVIKQLLPMGDIFS 245
            K+LQEDFVKCHIR HMLSL E   S       AKVVANIPFNISTDV+KQLLPMGDI S
Sbjct: 140 FKLLQEDFVKCHIRFHMLSLLENMTSLNEKPRRAKVVANIPFNISTDVVKQLLPMGDIIS 199

Query: 246 EVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVT 305
           EV LLLQEETA RLVE SLRTSEYRPIN+FVNFYS+P YKFKVPR+NFFPQP VDAAVVT
Sbjct: 200 EVALLLQEETASRLVESSLRTSEYRPINVFVNFYSDPVYKFKVPRSNFFPQPNVDAAVVT 259

Query: 306 FKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSR 365
           FKLKQ  DYPAV+S+KSFFS+V+SAFNGKRKMLR+SLQH+CTS EIE+AL +VGLPATSR
Sbjct: 260 FKLKQTADYPAVSSSKSFFSLVNSAFNGKRKMLRRSLQHICTSPEIEQALINVGLPATSR 319

Query: 366 PEELTLDDFVKLHNLIVQV 384
           PEELTLDDFVKLHNLI +V
Sbjct: 320 PEELTLDDFVKLHNLIARV 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568329|ref|XP_003552364.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/342 (70%), Positives = 276/342 (80%), Gaps = 15/342 (4%)

Query: 55  MTTSTLLVFQ------NPLLPKPTRPAHSSIAGVQKGAASACIVCARSQD-------DDY 101
           M+ S+L   Q      + LL +  +PAH S AGV++   +  +VCA           DDY
Sbjct: 1   MSPSSLCSLQTFPPISHALLNRHHKPAHDSTAGVRR--RTPYVVCAEKGSRASTRSADDY 58

Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
           HAT+KALNSKGRFPRKSLGQHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN
Sbjct: 59  HATLKALNSKGRFPRKSLGQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLN 118

Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
           +GA VLA+EKD+HM  LV ERF+S  +LKVL ED VKCH+RSHM SL       S  AKV
Sbjct: 119 SGAFVLAVEKDKHMAALVSERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKV 178

Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSE 281
           VANIPFNISTDVIK LLPMGDIFSEVVLLLQEETA+RLV  SLRT EYRPIN+FVNFYS+
Sbjct: 179 VANIPFNISTDVIKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTPEYRPINVFVNFYSD 238

Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
           PEYK +VPRTNFFPQP VDAAVV+FKLK  ++YP V+STKSFFSMV+SAFN KRKMLRKS
Sbjct: 239 PEYKLEVPRTNFFPQPNVDAAVVSFKLKLPSEYPQVSSTKSFFSMVNSAFNEKRKMLRKS 298

Query: 342 LQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
           LQH+CTSLEIE+AL  +GL ATSRPEELTLDDFVKLHNLI +
Sbjct: 299 LQHICTSLEIEEALTSIGLLATSRPEELTLDDFVKLHNLIAK 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532056|ref|XP_003534590.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/323 (73%), Positives = 267/323 (82%), Gaps = 7/323 (2%)

Query: 67  LLPKPTRPAHSSIAGVQK------GAASACIVCARSQDDDYHATIKALNSKGRFPRKSLG 120
           LL +  +PAH S AGV+        +  +     RS DD YHAT+KALNSKGRFPRKSLG
Sbjct: 19  LLNRHHKPAHDSTAGVRNRTPYVVSSERSSTASTRSADD-YHATLKALNSKGRFPRKSLG 77

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           QHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+GA VLA+EKD+HM  LV 
Sbjct: 78  QHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALVS 137

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
           ERF+S  +LKVL ED VKCH+RSHM SL       S  AKVVANIPFNISTDVIK LLPM
Sbjct: 138 ERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLPM 197

Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
           GDIFSEVVLLLQEETA+RLV  SLRT EYRP+N+FVNFYS+PEYK KVPR+NFFPQP VD
Sbjct: 198 GDIFSEVVLLLQEETAVRLVVSSLRTPEYRPVNVFVNFYSDPEYKLKVPRSNFFPQPNVD 257

Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
           AAVV+FKLK  ++YP V+STKSFFSMV+SAFN KRKMLRKSLQH+CTSLEIE+AL  +GL
Sbjct: 258 AAVVSFKLKLPSEYPQVSSTKSFFSMVNSAFNEKRKMLRKSLQHICTSLEIEEALTSIGL 317

Query: 361 PATSRPEELTLDDFVKLHNLIVQ 383
            ATSRPEELTLDDFVKLHNLI +
Sbjct: 318 LATSRPEELTLDDFVKLHNLIAK 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507115|ref|XP_003623846.1| Ribosomal RNA small subunit methyltransferase A [Medicago truncatula] gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|355498861|gb|AES80064.1| Ribosomal RNA small subunit methyltransferase A [Medicago truncatula]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/303 (73%), Positives = 252/303 (83%), Gaps = 10/303 (3%)

Query: 91  IVCARSQD-------DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGD 143
           + C R  +       DDYHAT+KALNSKGR P+KSLGQ+YMLNS+IN+QL   A V+EGD
Sbjct: 46  VACGRGNNRASTTNKDDYHATLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGD 105

Query: 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203
           +VLEIGPGTGSLTN L+N+GA VLA+EKD+HM  LV ERF+S  +LKVL ED VKCH+RS
Sbjct: 106 VVLEIGPGTGSLTNTLINSGAFVLAVEKDKHMAALVSERFSSTGKLKVLNEDIVKCHVRS 165

Query: 204 HMLSLF---ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
           H+ SL    E   S +  AKVVANIPF ISTDVIK LLPMGDIFSEVVLLLQEETALR V
Sbjct: 166 HISSLVGSTEDIDSDTRKAKVVANIPFYISTDVIKLLLPMGDIFSEVVLLLQEETALRWV 225

Query: 261 EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST 320
           EPSLRT EYRPINIFVNFYS+PEYKFKV RTNFFPQP VDAAVV+FKLKQ ++YP V+S 
Sbjct: 226 EPSLRTPEYRPINIFVNFYSDPEYKFKVARTNFFPQPNVDAAVVSFKLKQPSEYPQVSSN 285

Query: 321 KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNL 380
           KSFFSMV+SAFN KRKM+RKSLQH+CTSLEIE+AL  +GL +TSRPEELTLDDFVKLHN 
Sbjct: 286 KSFFSMVNSAFNEKRKMIRKSLQHICTSLEIEEALESIGLLSTSRPEELTLDDFVKLHNS 345

Query: 381 IVQ 383
           I +
Sbjct: 346 ITK 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300681318|emb|CAZ96033.1| dimethyladenosine transferase [Sorghum bicolor]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/288 (65%), Positives = 241/288 (83%), Gaps = 2/288 (0%)

Query: 99  DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
           DDYH+TI++LNS+GR  PRKSLGQ+YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT 
Sbjct: 56  DDYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTA 115

Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
            LL AGATV A+EKD+HM  LV++RF S +QLKV++ED  K HIRSH L    E+  ++ 
Sbjct: 116 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATK 175

Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
             AKVV+N+PFN+S++V+K LLPMGD+FS VVL+LQ+ETA+RL + S++  EYRPIN+FV
Sbjct: 176 KLAKVVSNLPFNVSSEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVFV 235

Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336
           NFYS+PEYKF+V R NFFP+PKV+ AV++FKLK A +YP V+S KSFFSMV+SAF GKRK
Sbjct: 236 NFYSKPEYKFRVDRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRK 295

Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
           MLRKSLQHLC+S EIE AL ++GLP T+RP +L LDDFV+LHN + +V
Sbjct: 296 MLRKSLQHLCSSSEIEAALDNIGLPVTARPSDLILDDFVRLHNHLTKV 343

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294464127|gb|ADE77582.1| unknown [Picea sitchensis]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/312 (64%), Positives = 237/312 (75%), Gaps = 8/312 (2%)

Query: 73  RPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQ 132
           +P+ SS+     G  +A   CA   +DDYH+T+K L S+GRFPRKSLGQHYMLNS IN+ 
Sbjct: 42  KPSMSSL-----GVPAASPRCALRAEDDYHSTLKVLQSRGRFPRKSLGQHYMLNSAINEL 96

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           +   A ++EGD+VLEIGPGTG+LTN L+NAGA V AIEKD HM  LV ERF +  ++KV+
Sbjct: 97  MVKEAQLKEGDVVLEIGPGTGALTNALVNAGAHVFAIEKDAHMAMLVSERFNNNGKVKVV 156

Query: 193 QEDFVKCHIRSHMLSLFERRKSSSGF---AKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
           QEDF +CHI   +LS        S +   AKVV+N+PFNI+TDV+K LLPMGD+FS VVL
Sbjct: 157 QEDFTRCHIEPQILSFSTSIAPGSNYGQMAKVVSNLPFNIATDVLKLLLPMGDMFSHVVL 216

Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 309
           LLQ+E ALR+V  S  T EYR INIFVNFYS PEYKFKV RTNFFPQP VDAAVV FKLK
Sbjct: 217 LLQDEMALRVVGSSPGTPEYRQINIFVNFYSVPEYKFKVQRTNFFPQPNVDAAVVVFKLK 276

Query: 310 QATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEEL 369
           Q  DYP V S K FFSMV+SAFNGKRKMLRKSLQHLC S +IE AL  +GLP TSRP EL
Sbjct: 277 QVVDYPHVASPKGFFSMVNSAFNGKRKMLRKSLQHLCASRDIESALRTLGLPETSRPGEL 336

Query: 370 TLDDFVKLHNLI 381
            +DDFV+L+NL+
Sbjct: 337 EMDDFVRLYNLL 348

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2025437	343	PFC1 "PALEFACE 1" [Arabidopsis	0.763	0.854	0.780	5.8e-121
TIGR_CMR|BA_0039	292	BA_0039 "dimethyladenosine tra	0.677	0.890	0.307	2.1e-29
TIGR_CMR|CHY_2616	291	CHY_2616 "dimethyladenosine tr	0.664	0.876	0.315	2.2e-27
TIGR_CMR|DET_0404	291	DET_0404 "dimethyladenosine tr	0.651	0.859	0.295	1.8e-25
TIGR_CMR|GSU_1864	276	GSU_1864 "dimethyladenosine tr	0.658	0.916	0.304	1.8e-25
TAIR|locus:2155031	380	DIM1B "adenosine dimethyl tran	0.578	0.584	0.314	1.6e-24
TIGR_CMR|SPO_2458	279	SPO_2458 "dimethyladenosine tr	0.638	0.878	0.319	1.1e-23
TIGR_CMR|SO_3639	268	SO_3639 "dimethyladenosine tra	0.666	0.955	0.262	4.8e-23
TIGR_CMR|CBU_1982	258	CBU_1982 "dimethyladenosine tr	0.653	0.972	0.255	6.1e-23
DICTYBASE|DDB_G0283789	314	dimt1l "dimethyladenosine tran	0.528	0.646	0.331	2.9e-22

TAIR|locus:2025437 PFC1 "PALEFACE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 231/296 (78%), Positives = 261/296 (88%)

Query:    91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
             + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct:    47 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query:   151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
             GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct:   107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query:   211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
              R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct:   167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query:   268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
             EYRPINI +NFYSEPEY F+VPR NFFPQPKVDAAVVTFKLK   DYP V+STK+FFS+V
Sbjct:   227 EYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKNFFSLV 286

Query:   328 SSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
             +SAFNGKRKMLRKSLQH+ +S +IEKALG  GLPATSRPEELTLDDFVKLHN+I +
Sbjct:   287 NSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKLHNVIAR 342

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0009409 "response to cold" evidence=IMP

GO:0016422 "mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity" evidence=ISS

TIGR_CMR|BA_0039 BA_0039 "dimethyladenosine transferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 84/273 (30%), Positives = 142/273 (52%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             +KSLGQ++++++ + +++   A +      +EIGPG G+LT  L      V+A E DQ +
Sbjct:    22 KKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 81

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             + ++ E  A    + V+ +D +K  +       FE  +       VVAN+P+ I+T ++ 
Sbjct:    82 LPILDETLAPYGNVTVINKDVLKADVHEVFSEQFEEGQD----VMVVANLPYYITTPILF 137

Query:   236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
             +LL         V+++Q+E   RL  +P   T EY  ++I + +Y+E E    VPRT F 
Sbjct:   138 KLLEEKLPVRGFVVMMQKEVGDRLAAKPG--TKEYGSLSIAIQYYTEVETVMTVPRTVFV 195

Query:   295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
             PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +       +K 
Sbjct:   196 PQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKE 254

Query:   355 LGD-----VGLPATSRPEELTLDDFVKLHNLIV 382
             L D     VG+    R E L++++F  L N +V
Sbjct:   255 LLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|CHY_2616 CHY_2616 "dimethyladenosine transferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 86/273 (31%), Positives = 145/273 (53%)

Query:   119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
             LGQH++ +  I  ++   A + + D VLEIGPG G LT +L  A   V+AIE D+ ++ +
Sbjct:    24 LGQHFLTDFGILAKIVEKAEITKDDAVLEIGPGAGVLTRLLAQAAKYVVAIEIDKKLLPV 83

Query:   179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF-AK---VVANIPFNISTDVI 234
             + E    +  + V+  D  + +    M    E+     GF  K   +VAN+P+  ++ +I
Sbjct:    84 LAETTGDLGNVVVVNADAREINFDRVMA---EQTGGEFGFEGKPYLIVANLPYYATSPLI 140

Query:   235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
              ++   G   S + L++Q+E A R+  +P  +   Y  +++   ++SEP    KVPRT F
Sbjct:   141 FKVFEEGYKVSSMTLMMQKEVAERITAKPGSKI--YGSLSVACQYFSEPRIVLKVPRTVF 198

Query:   294 FPQPKVDAAVVTFKLKQATDYPAVTSTK--SFFSMVSSAFNGKRKMLRKSLQHLCTSLE- 350
             FP P+V++AVV F LK+ +    +TS +   FF +V +AF  +RK + KSL         
Sbjct:   199 FPPPEVESAVVRFTLKENS----LTSEERLKFFQIVRAAFATRRKTIAKSLSGALNLKRN 254

Query:   351 -IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 382
              +E+ L  VG+    R E++  + F +L   +V
Sbjct:   255 YVEEVLLKVGIKPDLRAEQIPPESFYRLSQEVV 287

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|DET_0404 DET_0404 "dimethyladenosine transferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 78/264 (29%), Positives = 136/264 (51%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             RK LGQH++++  + +++  AA ++  D V+E+GPG G LT  L+     V+A+E D  +
Sbjct:    31 RKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKRAGQVIAVELDDKL 90

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             V  + E+F +    +++  D +K        S  E    +  + K+VAN+P+ I++ V++
Sbjct:    91 VTALTEKFKAYPNFRIIHSDILKT-------SPAEILGQNIPY-KLVANLPYYITSAVLR 142

Query:   236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
             Q L        +V+++Q+E A  +V    +T +   + + V FY  P     VP   F+P
Sbjct:   143 QFLEAEAKPELMVVMVQKEVAKNMVA---QTGDMGLLTLSVRFYGNPSLVSVVPGGAFYP 199

Query:   296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-QHLCTSLEIEKA 354
              P+VD+A+V   + QA     V S   FF +  + F  +RK L  +L Q L  S +   A
Sbjct:   200 PPEVDSAIVKVAIPQAAIMQGV-SEADFFKLARAGFGTRRKTLLNALAQGLGVSKQSVLA 258

Query:   355 L-GDVGLPATSRPEELTLDDFVKL 377
             L    G+    R E L+++++  L
Sbjct:   259 LLNRAGIEPARRAETLSMEEWKML 282

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|GSU_1864 GSU_1864 "dimethyladenosine transferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 81/266 (30%), Positives = 136/266 (51%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             RK+LGQ+++ +  +  ++AA  +   G+ +LEIGPG G+LT+ L      ++A+E D  +
Sbjct:     9 RKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQAGQLVAVELDDRL 68

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             V L+R  FA    + +++ D +   +R  +      R  +  + KV AN+P+NIST V+ 
Sbjct:    69 VPLLRGSFAGNPSVTIIEGDILDLDLRETL-----GRYGTPPW-KVAANLPYNISTPVLF 122

Query:   236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
             +LL   D+FS +VL+LQ+E   RL   P   + EY  +++    + +   +  V   +F 
Sbjct:   123 RLLDARDLFSRLVLMLQKEVGNRLAAGPG--SKEYGVLSVLFQLHFDVTREILVRPGSFH 180

Query:   295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE---I 351
             P PKVD+ V+ F +  A     V     F  +V ++F  +RK L   L+     +    I
Sbjct:   181 PVPKVDSVVLLF-VPLAQPRVDVGDEDYFRRVVKASFAMRRKTLWNCLKGGALGVPTDGI 239

Query:   352 EKALGDVGLPATSRPEELTLDDFVKL 377
                L   G+    R E L+L +F  L
Sbjct:   240 RDVLARCGIDEGRRGETLSLQEFASL 265

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TAIR|locus:2155031 DIM1B "adenosine dimethyl transferase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 77/245 (31%), Positives = 129/245 (52%)

Query:   112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
             G F  KS GQH + N+ I D +  ++ ++  D VLEIGPGTG+LT  LL A   V+A+E 
Sbjct:    60 GLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEL 119

Query:   172 DQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
             D+ MV ++R+R +     D+L ++Q+D +K     H             F  VVANIP+N
Sbjct:   120 DKRMVEILRKRVSDHGFADKLTIIQKDVLKTDF-PH-------------FDLVVANIPYN 165

Query:   229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFK 287
             IS+ ++ +L+   + F    LLLQ+E + RL+  P    S++  + + V   ++ ++   
Sbjct:   166 ISSPLVAKLVYGSNTFRSATLLLQKEFSRRLLANPG--DSDFNRLAVNVKLVADVKFVMD 223

Query:   288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
             V +  F P PKVD++V+    K+    P V + + + +   + F  K K L    +    
Sbjct:   224 VSKREFVPPPKVDSSVIRITPKEII--PDV-NVQEWLAFTRTCFGKKNKTLGSMFRQKKK 280

Query:   348 SLEIE 352
              +E++
Sbjct:   281 VMELQ 285

GO:0000154 "rRNA modification" evidence=IEA;IGI;ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA;IGI;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA;ISS

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046085 "adenosine metabolic process" evidence=IMP

TIGR_CMR|SPO_2458 SPO_2458 "dimethyladenosine transferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 86/269 (31%), Positives = 139/269 (51%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQ 173
             RKSLGQ+++L+  +  ++A  A  + E D VLEIGPG G LT  LL  GA  VLAIEKD 
Sbjct:    22 RKSLGQNFLLDLNLTAKIARQAGDLSECD-VLEIGPGPGGLTRGLLAEGARRVLAIEKDA 80

Query:   174 HMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
               +  + E  A+   +L+V+  D ++    +HM              ++ AN+P+N+ T+
Sbjct:    81 RCLPALAEIAAAYSGRLEVINGDALEIDPLAHMTPPI----------RIAANLPYNVGTE 130

Query:   233 VIKQLLPMGD---IFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
             ++ + L   D    +  + L+ Q E A R+V +P  +   Y  + +   + +E      +
Sbjct:   131 LLVRWLTPRDWPPFWQSLTLMFQREVAERIVAKPGSKA--YGRLALLAQWRAEARIVMSL 188

Query:   289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
             P   F P PKV +AVV         +PA  +  S   +V++AFN +RKMLR +L+     
Sbjct:   189 PPEAFTPPPKVSSAVVHLTALPEPRFPADAAILS--RVVAAAFNQRRKMLRAALKGQAPD 246

Query:   349 LEIEKALGDVGLPATSRPEELTLDDFVKL 377
             +E ++ L   G+  T R E++ L+ F  L
Sbjct:   247 IE-DRLLA-AGIKPTERAEQVPLEAFCAL 273

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|SO_3639 SO_3639 "dimethyladenosine transferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 71/270 (26%), Positives = 134/270 (49%)

Query:   112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
             G   RK  GQ+++ +  + +++  A A     +++EIGPG G+LT  +  A   +  +E 
Sbjct:     8 GHTARKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVATAIDNLTVVEL 67

Query:   172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
             D+ +V  ++      D+L + Q D ++    S ++     +K      KV  N+P+NIST
Sbjct:    68 DRDLVERLQNHPVLKDKLTIHQGDALQFDF-SQLV--VPGKK-----LKVFGNLPYNIST 119

Query:   232 DVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
              ++  L    +    +  +LQ+E  LRL   S  T  Y  + +   ++ +     +VP  
Sbjct:   120 PLMFHLFEFAEQIETMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYFCQVVPVLEVPPH 178

Query:   292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI 351
             +F P PKVD+AVV         +P          + ++AFN +RK LR +L+ + +  E 
Sbjct:   179 SFAPPPKVDSAVVRLLPYAEKPFPC-KDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEF 237

Query:   352 EKALGDVGLPATSRPEELTLDDFVKLHNLI 381
             E+    +G+    RPE+++++ +V + N++
Sbjct:   238 EQ----LGIDQNLRPEQISVEQYVAMANMV 263

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0009636 "response to toxic substance" evidence=ISS

TIGR_CMR|CBU_1982 CBU_1982 "dimethyladenosine transferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 68/266 (25%), Positives = 137/266 (51%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ +
Sbjct:     7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDL 66

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             V  +++++     + + Q D ++          F   K+     +VV N+P+NIST ++ 
Sbjct:    67 VAFLQKKYNQQKNITIYQNDALQFD--------FSSVKTDKPL-RVVGNLPYNISTPLLF 117

Query:   236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
              L        ++  +LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P
Sbjct:   118 HLFSQIHCIEDMHFMLQKEV-VRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTP 176

Query:   296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
              P+V++A++   + +    P   +      +V  AF+ +RK +  +L+ L    +    L
Sbjct:   177 PPRVESAIIRL-IPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWP--L 233

Query:   356 GDVGLPATSRPEELTLDDFVKLHNLI 381
              ++  P   RP+ELT++DFVK+ N++
Sbjct:   234 LEIN-PQL-RPQELTVEDFVKISNIL 257

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

DICTYBASE|DDB_G0283789 dimt1l "dimethyladenosine transferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 238 (88.8 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 75/226 (33%), Positives = 115/226 (50%)

Query:   117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
             KS GQH + N  I D +   + ++  D VLEIGPGTG+LT  LL     V+AIE D  M 
Sbjct:    31 KSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPRMA 90

Query:   177 GLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
               +++R A+      L+++  DF+K       L  F+           VAN+P+ IS+ +
Sbjct:    91 AELQKRVAASPYAQHLQIILGDFLKVD-----LPYFD---------VCVANVPYQISSPL 136

Query:   234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
               +LL    IF   VL+ Q+E ALRL  +P    S Y  +++     S+  +  KV + N
Sbjct:   137 TFKLLAHRPIFRTAVLMFQKEFALRLGAKPG--DSLYCRLSVNTQLLSKVTHLMKVGKNN 194

Query:   293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
             F P PKV++AVV  +++     P +   + +  +V   F+ K K L
Sbjct:   195 FLPPPKVESAVV--RIEPFNPPPPINFVE-WDGLVKLCFSRKNKTL 237

GO:0031167 "rRNA methylation" evidence=IEA

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0000154 "rRNA modification" evidence=IEA

GO:0052909 "18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.182	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
COG0030	259	COG0030, KsgA, Dimethyladenosine transferase (rRNA	7e-72
PRK00274	272	PRK00274, ksgA, 16S ribosomal RNA methyltransferas	1e-71
TIGR00755	253	TIGR00755, ksgA, dimethyladenosine transferase	8e-60
smart00650	169	smart00650, rADc, Ribosomal RNA adenine dimethylas	1e-55
PRK14896	258	PRK14896, ksgA, 16S ribosomal RNA methyltransferas	1e-45
pfam00398	254	pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla	1e-41
PTZ00338	294	PTZ00338, PTZ00338, dimethyladenosine transferase-	8e-31
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-05
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-04
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	2e-04
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	3e-04
COG3963	194	COG3963, COG3963, Phospholipid N-methyltransferase	4e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	8e-04
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	0.001
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	0.003
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	0.003

>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

 Score =  224 bits (574), Expect = 7e-72
 Identities = 100/268 (37%), Positives = 157/268 (58%), Gaps = 18/268 (6%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P K LGQ+++++  + D++  AA +  GD VLEIGPG G+LT  LL   A V AIE D+ 
Sbjct: 4   PNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRR 63

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  +++ERFA  D L V+  D +K               S +   KVVAN+P+NIS+ ++
Sbjct: 64  LAEVLKERFAPYDNLTVINGDALK-----------FDFPSLAQPYKVVANLPYNISSPIL 112

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
            +LL    I  ++VL++Q+E A RLV +P   + +Y  +++ V +Y++ E  F VP + F
Sbjct: 113 FKLLEEKFIIQDMVLMVQKEVAERLVAKPG--SKDYGRLSVLVQYYADVEIVFDVPPSAF 170

Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
           +P PKVD+AVV    K+    P V   + FF  V +AF+ +RK LR +L++L     +E+
Sbjct: 171 YPPPKVDSAVVRLVPKKEKPSP-VKDEEKFFKFVKAAFSQRRKTLRNNLKNLFG---LEE 226

Query: 354 ALGDVGLPATSRPEELTLDDFVKLHNLI 381
            L   G+   +R E L+ +DF+KL N +
Sbjct: 227 VLEAAGIDPNARAENLSPEDFLKLANAL 254

Length = 259

>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

 Score =  224 bits (574), Expect = 1e-71
 Identities = 99/280 (35%), Positives = 159/280 (56%), Gaps = 18/280 (6%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T + L   G   +KSLGQ+++++  I D++  AA  Q GD VLEIGPG G+LT  LL   
Sbjct: 5   TRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA 64

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
           A V A+E D+ +  ++ E FA  D L +++ D +K           +  +      KVVA
Sbjct: 65  AKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALK----------VDLSELQP--LKVVA 111

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEP 282
           N+P+NI+T ++  LL   D   ++V+++Q+E A R+V +P   +  Y  +++ V +Y + 
Sbjct: 112 NLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPG--SKAYGRLSVLVQYYCDV 169

Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
           E  F VP + F P PKVD+AVV    ++    P     + FF +V +AF  +RK LR +L
Sbjct: 170 EKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVPVK-DEELFFRVVKAAFAQRRKTLRNNL 228

Query: 343 QHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
           ++L  S E +E+AL   G+    R E L++++FV+L N +
Sbjct: 229 KNLFGSKEKLEEALEAAGIDPNRRAETLSVEEFVRLANAL 268

Length = 272

>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase

 Score =  193 bits (493), Expect = 8e-60
 Identities = 92/269 (34%), Positives = 155/269 (57%), Gaps = 18/269 (6%)

Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
            PRKSLGQ+++++  +  ++  AA V EGD+VLEIGPG G+LT  LL     V AIE D+
Sbjct: 2   RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDR 61

Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
            +   +R+  +  + L++++ D +K                     KVV+N+P+NIS+ +
Sbjct: 62  RLAERLRKLLSLYENLEIIEGDALK-----------VDLNEFPKQLKVVSNLPYNISSPL 110

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
           I +LL   D F   VL++Q+E A RL  +P   + +Y  +++ V +++  E  FKVP + 
Sbjct: 111 IFKLL-EKDKFRLAVLMVQKEVAERLTAKPG--SKDYGRLSVLVQYFANVEIVFKVPPSA 167

Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
           F+P PKVD+AVV    ++      V     F  ++ +AF  +RK LR +L++L    ++E
Sbjct: 168 FYPPPKVDSAVVRLIPRET---FPVKDEALFEKLLKAAFQQRRKTLRNNLKNLLPKEKLE 224

Query: 353 KALGDVGLPATSRPEELTLDDFVKLHNLI 381
           + L  +G+  T+R E+L+ +DF++L N +
Sbjct: 225 EVLTQLGIDPTARAEQLSPEDFLRLANYL 253

In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253

>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases

 Score =  180 bits (458), Expect = 1e-55
 Identities = 65/181 (35%), Positives = 100/181 (55%), Gaps = 13/181 (7%)

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
           + D++  AA ++ GD VLEIGPG G+LT  LL     V AIE D  +   +RE+FA+ D 
Sbjct: 1   VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLREKFAAADN 60

Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVV 248
           L V+  D +K  +                  KVV N+P+NIST ++ +LL     F + V
Sbjct: 61  LTVIHGDALKFDLPKL------------QPYKVVGNLPYNISTPILFKLLEEPPAFRDAV 108

Query: 249 LLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKL 308
           L++Q+E A RL      + +Y  +++ +  Y++ +  FKVP + F P PKVD+AVV  + 
Sbjct: 109 LMVQKEVARRLAAKPG-SKDYGRLSVLLQPYADVKILFKVPPSAFRPPPKVDSAVVRLER 167

Query: 309 K 309
           +
Sbjct: 168 R 168

Length = 169

>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

 Score =  157 bits (399), Expect = 1e-45
 Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 23/271 (8%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
             K LGQH++++  + D++   A   +GD VLEIGPG G+LT+ L      V AIE D  
Sbjct: 3   MNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   +R+   +   +++++ D +K  +                F KVV+N+P+ IS+ + 
Sbjct: 63  LAEFLRDDEIAAGNVEIIEGDALKVDLPE--------------FNKVVSNLPYQISSPIT 108

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
            +LL  G  F   VL+ Q+E A R+V     T EY  +++ V +Y++ E   KVP   F 
Sbjct: 109 FKLLKHG--FEPAVLMYQKEFAERMVAKP-GTKEYGRLSVMVQYYADVEIVEKVPPGAFS 165

Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
           P+PKVD+AVV    ++   Y  V     F   V + F  +RK LR +L++       E  
Sbjct: 166 PKPKVDSAVVRLTPREP-KYE-VYDEDFFDDFVKALFQHRRKTLRNALKNSAHISGKEDI 223

Query: 355 LGDVGLP----ATSRPEELTLDDFVKLHNLI 381
              V          R  +L+ ++  +L NL+
Sbjct: 224 KAVVEALPEELLNKRVFQLSPEEIAELANLL 254

Length = 258

>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase

 Score =  146 bits (371), Expect = 1e-41
 Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 17/228 (7%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
            R+  GQ+++ N ++ +++   A +QE D VLEIGPG G+LT  L      V+AIE D  
Sbjct: 3   GRRKYGQNFLTNPKVINRIVDKANLQESDTVLEIGPGKGALTTELAKRAKQVVAIEIDPR 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   ++E+ A    ++V+ +DF+K        S  +          VV NIP+NI+T ++
Sbjct: 63  LAKRLQEKLALHPNVEVVHQDFLK-------FSFPKDDP-----FLVVGNIPYNITTPIV 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           K+LL       +++L++Q+E A RL+    R      + +    +++ +   KVPR++F 
Sbjct: 111 KKLLFESRFGVKMLLVVQKEFARRLLA---RPKIRSRLTVLTEPFTDIKLVAKVPRSSFR 167

Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
           P PKVD+A+V  +L++      V   K +  +V   FNGK + L  SL
Sbjct: 168 PPPKVDSALV--RLERRDTPLPVKDLKKYDYLVRKLFNGKGRSLFTSL 213

Length = 254

>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein; Provisional

 Score =  118 bits (299), Expect = 8e-31
 Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 50/291 (17%)

Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           K  GQH + N  + D++   AA++  D VLEIGPGTG+LT  LL     V+AIE D  MV
Sbjct: 12  KKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMV 71

Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
             +++RF +     +L+V++ D +K        + F        F   VAN+P+ IS+ +
Sbjct: 72  AELKKRFQNSPLASKLEVIEGDALK--------TEFPY------FDVCVANVPYQISSPL 117

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
           + +LL    +F   VL+ Q+E ALRL+ +P      Y  +++         +  KV + +
Sbjct: 118 VFKLLAHRPLFRCAVLMFQKEFALRLLAQPG--DELYCRLSVNTQLLCRVTHLMKVSKNS 175

Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR---------KSLQ 343
           F P PKV+++VV  + K     P     + +  ++   F+ K K L          ++L+
Sbjct: 176 FNPPPKVESSVVRIEPKNP---PPDVDFEEWDGLLRICFSRKNKTLSAIFKTKSVLQTLE 232

Query: 344 H----LCTSLE-------------IEKALGDVGLPATSRPEELTLDDFVKL 377
           H     CT +              I + L D G+    R  +L +DDF+KL
Sbjct: 233 HNYKSWCTMINKKVPVSLEPFKEFIAEILEDSGM-FEKRSVKLDIDDFLKL 282

Length = 294

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRER--FASIDQLKVLQEDF 196
            G  VL+IG GTGSL   L     GA V  ++    M+ L RE    A   ++  +Q D 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
              AVQ GD VL++G G G+    L   +     V+ I++ + M+ L +ER A
Sbjct: 13  ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA 65

Length = 241

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----Q 188
           LA  A  ++GD VLE+G G+G +  V    G  V+ ++ + + V   +      +     
Sbjct: 15  LAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNG 74

Query: 189 LKVLQEDFVKC 199
           ++V++ D  + 
Sbjct: 75  VEVIRSDLFEP 85

Length = 188

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLK 190
           +     ++ GD VLEIG G+G    VL      V++IE+ + +    R    +   + + 
Sbjct: 64  MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVT 123

Query: 191 VLQED 195
           V   D
Sbjct: 124 VRHGD 128

Length = 209

>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQL 189
           +A+    + G  VLE+GPGTG +T  +L+ G    ++ AIE     V  + + +  ++ +
Sbjct: 40  MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNII 99

Query: 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV-VANIPFNISTDVIKQLL 238
                      +R+  L   + +   S  + + + N P +    +++ LL
Sbjct: 100 NGDAF-----DLRTT-LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLL 143

Length = 194

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 21/130 (16%)

Query: 140 QEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQE 194
           + G  VL++G GTG LT +L   L  GA V+ I+  +  +   +E       + ++ +Q 
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQG 61

Query: 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEE 254
           D         +  L + +   + F  V++N   N   D          +  E++ +L+  
Sbjct: 62  D---------IEELPQLQLEDNSFDVVISNEVLNHLPD-------PDKVLEEIIRVLKPG 105

Query: 255 TALRLVEPSL 264
             L + +P L
Sbjct: 106 GVLIVSDPVL 115

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201
           L+IG GTG+L   LL A  G     ++     +    ER A++  L  ++        
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA 58

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLT---NVLLNAGATVLAIEKDQHMVGLVR 180
           M   EI     +   +++GD++L+IG GTGS+T   ++L+     V A++KD+  + L R
Sbjct: 23  MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR 82

Query: 181 ---ERFASIDQLKVLQED 195
              E+F  ++ + +++ +
Sbjct: 83  RNAEKFGVLNNIVLIKGE 100

Length = 198

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVR- 180
           M   EI     +    + GD + +IG GTGS+T     AG    V+AIE+D+  + L+  
Sbjct: 17  MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER 76

Query: 181 --ERF 183
              RF
Sbjct: 77  NAARF 81

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	100.0
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	100.0
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	100.0
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	100.0
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	100.0
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	100.0
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	100.0
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	100.0
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	100.0
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.74
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.68
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.64
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.63
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.6
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.56
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.55
PHA03412	241	putative methyltransferase; Provisional	99.41
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.35
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.35
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.32
COG4123	248	Predicted O-methyltransferase [General function pr	99.28
PLN02244	340	tocopherol O-methyltransferase	99.27
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.27
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.25
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.25
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.25
PHA03411	279	putative methyltransferase; Provisional	99.25
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.25
PRK14967	223	putative methyltransferase; Provisional	99.24
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.23
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.21
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.21
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.21
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.2
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.2
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.19
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.19
PRK11207	197	tellurite resistance protein TehB; Provisional	99.19
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.19
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.18
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.17
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.16
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.16
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.15
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.14
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.13
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.13
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.13
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.12
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.12
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.11
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.1
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.09
PRK14968	188	putative methyltransferase; Provisional	99.09
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.09
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.08
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.08
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.08
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.08
COG2890	280	HemK Methylase of polypeptide chain release factor	99.08
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.08
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.06
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.06
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.06
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.06
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.05
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.05
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.05
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.04
PLN02336	475	phosphoethanolamine N-methyltransferase	99.03
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.03
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.03
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.03
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.03
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.02
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.02
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.02
PRK07402	196	precorrin-6B methylase; Provisional	99.01
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.0
PRK05785	226	hypothetical protein; Provisional	99.0
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.99
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.99
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.99
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.99
PRK12335	287	tellurite resistance protein TehB; Provisional	98.99
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.99
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.98
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.97
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.97
PRK04266	226	fibrillarin; Provisional	98.97
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.96
PLN02336	475	phosphoethanolamine N-methyltransferase	98.95
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.93
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.92
PRK08317	241	hypothetical protein; Provisional	98.91
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.91
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.91
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.91
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.9
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.9
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.9
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.89
PLN02490	340	MPBQ/MSBQ methyltransferase	98.89
PRK04148	134	hypothetical protein; Provisional	98.89
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.89
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.88
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.88
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.88
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.87
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.86
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.86
PRK06922	677	hypothetical protein; Provisional	98.85
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.85
PLN03075	296	nicotianamine synthase; Provisional	98.84
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.83
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.83
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.82
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.82
PLN02672	1082	methionine S-methyltransferase	98.82
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.81
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.81
PRK06202	232	hypothetical protein; Provisional	98.81
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.81
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.79
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.79
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.78
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.77
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.77
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.76
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.76
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.75
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.74
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.74
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.74
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.74
KOG2904	328	consensus Predicted methyltransferase [General fun	98.72
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.72
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.72
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.7
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.67
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.67
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.66
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.65
PRK00811	283	spermidine synthase; Provisional	98.65
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.61
PTZ00146	293	fibrillarin; Provisional	98.59
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.59
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.57
KOG1271	227	consensus Methyltransferases [General function pre	98.57
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.56
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.54
PRK04457	262	spermidine synthase; Provisional	98.53
TIGR00438	188	rrmJ cell division protein FtsJ.	98.52
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.52
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.51
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.51
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.51
PRK01581	374	speE spermidine synthase; Validated	98.5
PLN02366	308	spermidine synthase	98.5
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.49
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.49
PLN02476	278	O-methyltransferase	98.49
TIGR03438	301	probable methyltransferase. This model represents	98.48
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.48
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.46
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.45
COG2521	287	Predicted archaeal methyltransferase [General func	98.45
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.43
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.42
PRK03612	521	spermidine synthase; Provisional	98.42
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.37
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.37
KOG4300	252	consensus Predicted methyltransferase [General fun	98.36
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.36
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.36
PRK10742	250	putative methyltransferase; Provisional	98.36
COG4122	219	Predicted O-methyltransferase [General function pr	98.36
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.35
COG2520	341	Predicted methyltransferase [General function pred	98.3
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.29
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.25
COG4076	252	Predicted RNA methylase [General function predicti	98.17
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.17
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.16
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.16
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.11
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.1
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.08
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.05
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.02
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.01
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.99
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.96
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.93
PLN02823	336	spermine synthase	97.91
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.91
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.88
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.87
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.86
KOG2730	263	consensus Methylase [General function prediction o	97.8
PF13679	141	Methyltransf_32: Methyltransferase domain	97.75
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.72
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.71
KOG3010	261	consensus Methyltransferase [General function pred	97.71
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.65
COG0286	489	HsdM Type I restriction-modification system methyl	97.59
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.51
KOG2940	325	consensus Predicted methyltransferase [General fun	97.47
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.46
KOG2899	288	consensus Predicted methyltransferase [General fun	97.41
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.39
COG3897	218	Predicted methyltransferase [General function pred	97.38
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.34
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.31
PRK00536	262	speE spermidine synthase; Provisional	97.31
KOG2361	264	consensus Predicted methyltransferase [General fun	97.27
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.08
PRK11524	284	putative methyltransferase; Provisional	97.07
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.06
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.99
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.95
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.84
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.82
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.79
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.77
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.77
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.7
PRK13699	227	putative methylase; Provisional	96.69
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.6
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.59
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.58
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.53
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.5
PHA01634	156	hypothetical protein	96.42
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.41
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.37
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.28
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.21
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.14
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.09
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.04
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.04
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.03
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.92
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	95.88
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.84
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.75
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.69
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	95.6
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.54
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.51
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.42
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.3
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.3
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	95.2
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	94.87
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	94.86
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.62
KOG2912	419	consensus Predicted DNA methylase [Function unknow	94.5
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	94.43
PRK10458	467	DNA cytosine methylase; Provisional	94.21
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	93.85
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.71
KOG2078	495	consensus tRNA modification enzyme [RNA processing	93.67
COG1565	370	Uncharacterized conserved protein [Function unknow	93.66
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.63
KOG1227	351	consensus Putative methyltransferase [General func	93.61
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	93.49
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	92.92
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	92.73
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	92.69
TIGR00497	501	hsdM type I restriction system adenine methylase (	92.61
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.57
COG1568	354	Predicted methyltransferases [General function pre	92.44
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	92.4
KOG3115	249	consensus Methyltransferase-like protein [General	91.83
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	91.66
COG0863	302	DNA modification methylase [DNA replication, recom	91.64
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	91.62
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	91.03
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	90.91
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	90.42
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	90.25
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	90.2
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	89.77
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	89.67
KOG3924	419	consensus Putative protein methyltransferase invol	89.57
KOG2352	482	consensus Predicted spermine/spermidine synthase [	89.04
PF00416	107	Ribosomal_S13: Ribosomal protein S13/S18; InterPro	88.72
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	88.66
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	88.44
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	88.35
PRK12829	264	short chain dehydrogenase; Provisional	88.06
PF06831	92	H2TH: Formamidopyrimidine-DNA glycosylase H2TH dom	87.47
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	87.36
PLN02253	280	xanthoxin dehydrogenase	87.29
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	87.19
KOG1331	293	consensus Predicted methyltransferase [General fun	87.15
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	86.7
COG1255	129	Uncharacterized protein conserved in archaea [Func	86.49
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	86.12
PRK04053	149	rps13p 30S ribosomal protein S13P; Reviewed	86.08
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	86.01
PTZ00134	154	40S ribosomal protein S18; Provisional	86.0
PRK05867	253	short chain dehydrogenase; Provisional	85.98
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	85.88
PRK07326	237	short chain dehydrogenase; Provisional	85.48
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	85.39
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	85.38
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	85.36
COG2961	279	ComJ Protein involved in catabolism of external DN	85.1
COG2933	358	Predicted SAM-dependent methyltransferase [General	85.05
PRK07454	241	short chain dehydrogenase; Provisional	84.89
CHL00137	122	rps13 ribosomal protein S13; Validated	84.87
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	84.81
KOG2920	282	consensus Predicted methyltransferase [General fun	84.69
PRK07523	255	gluconate 5-dehydrogenase; Provisional	84.55
COG0099	121	RpsM Ribosomal protein S13 [Translation, ribosomal	84.53
PRK09072	263	short chain dehydrogenase; Provisional	84.52
PRK05179	122	rpsM 30S ribosomal protein S13; Validated	84.44
TIGR00275	400	flavoprotein, HI0933 family. The model when search	84.16
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.1
PRK06949	258	short chain dehydrogenase; Provisional	84.01
PRK08340	259	glucose-1-dehydrogenase; Provisional	83.93
COG0569	225	TrkA K+ transport systems, NAD-binding component [	83.67
TIGR03631	113	bact_S13 30S ribosomal protein S13. This model des	83.52
COG4798	238	Predicted methyltransferase [General function pred	83.48
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	83.24
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	82.88
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.86
PRK07063	260	short chain dehydrogenase; Provisional	82.85
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	82.81
PRK08862	227	short chain dehydrogenase; Provisional	82.8
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	82.7
PRK07814	263	short chain dehydrogenase; Provisional	82.69
PRK08589	272	short chain dehydrogenase; Validated	82.41
PRK07024	257	short chain dehydrogenase; Provisional	82.37
PRK06172	253	short chain dehydrogenase; Provisional	82.2
PRK07677	252	short chain dehydrogenase; Provisional	82.17
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	82.13
PRK08339	263	short chain dehydrogenase; Provisional	82.08
PRK08226	263	short chain dehydrogenase; Provisional	82.02
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	81.88
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	81.75
KOG2360	413	consensus Proliferation-associated nucleolar prote	81.73
PRK07774	250	short chain dehydrogenase; Provisional	81.69
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	81.69
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	81.67
PRK07478	254	short chain dehydrogenase; Provisional	81.64
PRK07035	252	short chain dehydrogenase; Provisional	81.5
PRK08213	259	gluconate 5-dehydrogenase; Provisional	81.45
PRK06124	256	gluconate 5-dehydrogenase; Provisional	81.31
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.03
PRK01103	274	formamidopyrimidine/5-formyluracil/ 5-hydroxymethy	80.83
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.71
PRK05866	293	short chain dehydrogenase; Provisional	80.59
PRK06194	287	hypothetical protein; Provisional	80.41
PRK05872	296	short chain dehydrogenase; Provisional	80.34
PLN02780	320	ketoreductase/ oxidoreductase	80.32
PRK08643	256	acetoin reductase; Validated	80.29
PRK05854	313	short chain dehydrogenase; Provisional	80.08

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-57  Score=422.95  Aligned_cols=254  Identities=39%  Similarity=0.659  Sum_probs=237.1

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~  193 (384)
                      ++++.+||||+.|+.++++|++.+++.+++.|||||||.|++|..|++++++|+|||+|+++++.+++.....+|+++++
T Consensus         3 k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~   82 (259)
T COG0030           3 RPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN   82 (259)
T ss_pred             CCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence            56799999999999999999999999999999999999999999999999999999999999999999987667999999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccce
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~ls  273 (384)
                      +|+++.+++++           ..++.||+|+||+|+++++.+|++....+..+++|+|+|+|+|++ |.||++.||++|
T Consensus        83 ~DaLk~d~~~l-----------~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~-A~pgsk~Yg~Ls  150 (259)
T COG0030          83 GDALKFDFPSL-----------AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLV-AKPGSKDYGRLS  150 (259)
T ss_pred             CchhcCcchhh-----------cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHh-CCCCCcccchhh
Confidence            99999988642           157899999999999999999999887788999999999999999 899999999999


Q ss_pred             eeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHHH
Q 016715          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK  353 (384)
Q Consensus       274 vl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~  353 (384)
                      |++|+++++++++.|++++|+|+|+|||+||+++|++....+ ..+.+.|+.+++.+|.||||+|+|+|+.+++   +.+
T Consensus       151 V~~q~~~~v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~-~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~---~~~  226 (259)
T COG0030         151 VLVQYYADVEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSP-VKDEEKFFKFVKAAFSQRRKTLRNNLKNLFG---LEE  226 (259)
T ss_pred             hhhhheEEEEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCc-ccCHHHHHHHHHHHHhhhhHHHHHHHHhhhh---HHH
Confidence            999999999999999999999999999999999997754443 4578999999999999999999999999876   678


Q ss_pred             HHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          354 ALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       354 ~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      +|+.+|++++.|+++|+++||++|++.+..
T Consensus       227 ~l~~~~i~~~~R~e~ls~~~f~~L~~~l~~  256 (259)
T COG0030         227 VLEAAGIDPNARAENLSPEDFLKLANALKG  256 (259)
T ss_pred             HHHhcCCCcccChhhCCHHHHHHHHHHHhh
Confidence            899999999999999999999999998754

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=100.00  E-value=1.8e-52  Score=400.19  Aligned_cols=255  Identities=32%  Similarity=0.494  Sum_probs=230.7

Q ss_pred             hCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---C
Q 016715          110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I  186 (384)
Q Consensus       110 ~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~  186 (384)
                      .+++++++.+||||+.|+.++++|++.+.+.++++|||||||+|.+|..+++.+.+|+|+|+|+++++.+++++..   .
T Consensus         5 ~~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~   84 (294)
T PTZ00338          5 KSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA   84 (294)
T ss_pred             cCCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence            4577999999999999999999999999999999999999999999999999988999999999999999998763   3


Q ss_pred             CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCC
Q 016715          187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT  266 (384)
Q Consensus       187 ~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~  266 (384)
                      ++++++++|+++.++              +.+|.||+|+||+|+++++.++++....+..+++|+|+|+|+|++ |.||+
T Consensus        85 ~~v~ii~~Dal~~~~--------------~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~-A~pg~  149 (294)
T PTZ00338         85 SKLEVIEGDALKTEF--------------PYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLL-AQPGD  149 (294)
T ss_pred             CcEEEEECCHhhhcc--------------cccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHh-cCCCC
Confidence            589999999998754              357999999999999999999998767788999999999999999 89999


Q ss_pred             CCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhh--
Q 016715          267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH--  344 (384)
Q Consensus       267 ~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~--  344 (384)
                      +.|+++||++|++++++.+++|++.+|+|+|+|||+||+|+|++.+.   ..+.+.|+.+++.+|.||||+|+|+|+.  
T Consensus       150 k~y~~LSv~~q~~~~~~~~~~V~~~~F~P~PkVdSavv~l~~~~~~~---~~~~~~~~~~v~~~F~~rrK~l~~~l~~~~  226 (294)
T PTZ00338        150 ELYCRLSVNTQLLCRVTHLMKVSKNSFNPPPKVESSVVRIEPKNPPP---DVDFEEWDGLLRICFSRKNKTLSAIFKTKS  226 (294)
T ss_pred             cccCHHHHHHHHHhceEEEEEeCchhCCCCCCcEEEEEEEEECCCCC---CcCHHHHHHHHHHHHhhccHHHHHHhCcch
Confidence            99999999999999999999999999999999999999999987532   2457789999999999999999988754  


Q ss_pred             -----------hcC-------------hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          345 -----------LCT-------------SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       345 -----------~~~-------------~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                                 +++             ++.+.++|+++|++ +.|||+|+++||++|++.+.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~R~e~l~~~~f~~L~~~~~~  288 (294)
T PTZ00338        227 VLQTLEHNYKSWCTMINKKVPVSLEPFKEFIAEILEDSGMF-EKRSVKLDIDDFLKLLLAFNK  288 (294)
T ss_pred             hHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHcCCc-ccChhhCCHHHHHHHHHHHHH
Confidence                       322             34566789999996 899999999999999998864

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=100.00  E-value=1.7e-51  Score=391.28  Aligned_cols=266  Identities=36%  Similarity=0.613  Sum_probs=241.3

Q ss_pred             HHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Q 016715          103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       103 ~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~  182 (384)
                      .+.+.+...++++++.+||||++++.+++.+++.+.+.++++|||||||+|.+|..+++++.+|+|+|+|+.|++.++++
T Consensus         4 ~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~   83 (272)
T PRK00274          4 RTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAET   83 (272)
T ss_pred             hHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHh
Confidence            44566778899999999999999999999999999998999999999999999999999988999999999999999988


Q ss_pred             hcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcC
Q 016715          183 FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEP  262 (384)
Q Consensus       183 ~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a  262 (384)
                      +.. ++++++++|+.++++++            -.++.||+|+||+++++++.+++.....+..+++|+|+|+|+|++ +
T Consensus        84 ~~~-~~v~~i~~D~~~~~~~~------------~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~-a  149 (272)
T PRK00274         84 FAE-DNLTIIEGDALKVDLSE------------LQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIV-A  149 (272)
T ss_pred             hcc-CceEEEEChhhcCCHHH------------cCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHc-C
Confidence            754 68999999999987643            115899999999999999999997655578899999999999999 8


Q ss_pred             CCCCCCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHH
Q 016715          263 SLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL  342 (384)
Q Consensus       263 ~pg~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l  342 (384)
                      .||++.|+++||++|++++++++++|+++.|+|+|+|||+||+|+|++.+.++ ..+.+.|..+++++|.+|||+|+++|
T Consensus       150 ~pg~~~y~~lSv~~~~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~l  228 (272)
T PRK00274        150 KPGSKAYGRLSVLVQYYCDVEKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVP-VKDEELFFRVVKAAFAQRRKTLRNNL  228 (272)
T ss_pred             CCCCccccHHHHHHHHHcceEEEEEeChhhCCCCCCceEEEEEEEECCCCCCC-cccHHHHHHHHHHHHhchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998754333 34578899999999999999999999


Q ss_pred             hhhcC-hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          343 QHLCT-SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       343 ~~~~~-~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      +.+++ .+.+.++|+.+|++++.||++|+++||++|++.+.+
T Consensus       229 ~~~~~~~~~~~~~l~~~~~~~~~r~~~l~~~~~~~L~~~~~~  270 (272)
T PRK00274        229 KNLFGSKEKLEEALEAAGIDPNRRAETLSVEEFVRLANALAA  270 (272)
T ss_pred             HhhccchHHHHHHHHHCCCCcCCCceeCCHHHHHHHHHHHHh
Confidence            99875 566778899999999999999999999999998764

>TIGR00755 ksgA dimethyladenosine transferase

Probab=100.00  E-value=2.9e-49  Score=372.43  Aligned_cols=253  Identities=37%  Similarity=0.630  Sum_probs=229.7

Q ss_pred             CCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEE
Q 016715          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL  192 (384)
Q Consensus       113 ~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~  192 (384)
                      ++|++.+||||+.|+.+++++++.++..++++|||||||+|.+|..|++++.+|+++|+|+.+++.+++++...++++++
T Consensus         1 ~~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~   80 (253)
T TIGR00755         1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVI   80 (253)
T ss_pred             CCCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEE
Confidence            36899999999999999999999999888999999999999999999999889999999999999999887655689999


Q ss_pred             EccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccc
Q 016715          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI  272 (384)
Q Consensus       193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~l  272 (384)
                      ++|+.+.++...           +..+.|++|+||+++++++.+++. ...+..+++|+|+|+|+|++ +.||++.|+++
T Consensus        81 ~~D~~~~~~~~~-----------d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~-a~pg~~~y~~l  147 (253)
T TIGR00755        81 EGDALKVDLPDF-----------PKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLT-AKPGSKDYGRL  147 (253)
T ss_pred             ECchhcCChhHc-----------CCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHc-cCCCCCcccHH
Confidence            999999876420           112599999999999999999995 33467899999999999999 89999999999


Q ss_pred             eeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHH
Q 016715          273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE  352 (384)
Q Consensus       273 svl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~  352 (384)
                      |+++|+++++++++.|++.+|+|+|+|||++|+|+|++.+   ...+.+.|..+++++|.+|||+|+|+|+.+++.+...
T Consensus       148 sv~~~~~~~~~~~~~v~~~~F~P~PkVds~vv~l~~~~~~---~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~  224 (253)
T TIGR00755       148 SVLVQYFANVEIVFKVPPSAFYPPPKVDSAVVRLIPREQF---PVKDIALFEKLLKAAFSQRRKTLRNNLKQLLKASKLE  224 (253)
T ss_pred             HHHHHHHcceEEEEEEchhhCcCCCCeeEEEEEEEECCCC---CcccHHHHHHHHHHHHccchHHHHHHHhhhcchhHHH
Confidence            9999999999999999999999999999999999998764   2346788999999999999999999999998877777


Q ss_pred             HHHHhCCCCCCCCCCcCCHHHHHHHHHHH
Q 016715          353 KALGDVGLPATSRPEELTLDDFVKLHNLI  381 (384)
Q Consensus       353 ~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~  381 (384)
                      .+|+..|+++++|+++||++||++|++.+
T Consensus       225 ~~l~~~~i~~~~r~~~l~~~~~~~l~~~~  253 (253)
T TIGR00755       225 EVLEQLGLDPTARAEQLSPEDFLRLANLL  253 (253)
T ss_pred             HHHHHCCcCCCCCcccCCHHHHHHHHHhC
Confidence            88999999999999999999999999864

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=100.00  E-value=1.6e-48  Score=369.13  Aligned_cols=259  Identities=35%  Similarity=0.599  Sum_probs=233.4

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~  193 (384)
                      ++++.+||||+.|+.++++|++.+++.+++.|||||+|+|.+|..|++.+.+|+++|+|+.+++.+++++...+++++++
T Consensus         3 k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~   82 (262)
T PF00398_consen    3 KPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVIN   82 (262)
T ss_dssp             SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred             CCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeee
Confidence            68899999999999999999999999999999999999999999999999999999999999999999887667999999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCC-eeEEEEEeeHHHHHHHhcCCCCCCCcccc
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRLVEPSLRTSEYRPI  272 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~-~~~~~~~~qke~a~rl~~a~pg~~~y~~l  272 (384)
                      +|+++++.....         ......||+|+||+++++++.+++..... ...+++|+|+|+|+|++ +.||++.|+++
T Consensus        83 ~D~l~~~~~~~~---------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~-a~pg~~~~~~l  152 (262)
T PF00398_consen   83 GDFLKWDLYDLL---------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLL-AKPGSKRYSRL  152 (262)
T ss_dssp             S-TTTSCGGGHC---------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHH-TSTTSTTCSHH
T ss_pred             cchhccccHHhh---------cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhcc-CCCCCCccchh
Confidence            999999876421         24678999999999999999999873333 68899999999999999 89999999999


Q ss_pred             eeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHH
Q 016715          273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE  352 (384)
Q Consensus       273 svl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~  352 (384)
                      |+++|++++++.++.+++++|+|+|+|||++|+|+|++.+.++ ..+.+.|.++++++|.+|||+|+++|+.+++.+.++
T Consensus       153 sv~~q~~~~i~~l~~v~~~~F~P~PkVds~vv~l~p~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~L~~~~~~~~~~  231 (262)
T PF00398_consen  153 SVLAQAFFDIKLLFKVPPSCFYPPPKVDSAVVRLTPKENPLIP-PEDMDAFEYFVRQLFSQRRKTLRNSLKSLFPGEQLE  231 (262)
T ss_dssp             HHHHHHHEEEEEEEEE-GGGEESSSSS-EEEEEEEE-SSCSS--CSHHHHHHHHHHHHHTTTTSBHHHHTTCTHHHHHHH
T ss_pred             hhhhhhhhceeEecccCCccccCCCCCceEEEEEEECCCCCCc-ccCHHHHHHHHHHHHhCcchHHHHHHhhhcCHHHHH
Confidence            9999999999999999999999999999999999999875443 456899999999999999999999999998888888


Q ss_pred             HHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          353 KALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       353 ~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      .+++.+|++++.|+++|+++||++|++.+++
T Consensus       232 ~~~~~~~i~~~~r~~~ls~~~~~~l~~~l~k  262 (262)
T PF00398_consen  232 ELLEKAGIDPNARAEELSPEQFLKLFKYLNK  262 (262)
T ss_dssp             HHHHHCTHTTTTCGGCHHHHHHHHHHHHHHH
T ss_pred             HhhhhcCCCCCCCcccCCHHHHHHHHHHhhC
Confidence            8888899999999999999999999999875

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=100.00  E-value=2.9e-47  Score=359.70  Aligned_cols=251  Identities=32%  Similarity=0.524  Sum_probs=222.1

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~  193 (384)
                      +|++.+||||+.|++++++|++.++..++++|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++...+++++++
T Consensus         2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~   81 (258)
T PRK14896          2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE   81 (258)
T ss_pred             CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence            68999999999999999999999998889999999999999999999998899999999999999999886556899999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccce
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~ls  273 (384)
                      +|+.+++++              .+|.|++|+||+++++++.++...  .+..+++|+|+|+|+|++ +.||++.||++|
T Consensus        82 ~D~~~~~~~--------------~~d~Vv~NlPy~i~s~~~~~l~~~--~~~~~~l~~q~e~A~rl~-a~~g~~~yg~ls  144 (258)
T PRK14896         82 GDALKVDLP--------------EFNKVVSNLPYQISSPITFKLLKH--GFEPAVLMYQKEFAERMV-AKPGTKEYGRLS  144 (258)
T ss_pred             eccccCCch--------------hceEEEEcCCcccCcHHHHHHHhh--ccceeEEEeeHHHHHHhc-CCCCCccccHHH
Confidence            999987642              468999999999999999988763  355689999999999999 899999999999


Q ss_pred             eeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhc---ChHH
Q 016715          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLE  350 (384)
Q Consensus       274 vl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~---~~~~  350 (384)
                      ++.+++++++.++.+++..|+|+|+|||+||+|+|++. .. ...+.+.|+.+++.+|.+|||+|+|+|+.++   +.+.
T Consensus       145 v~~~~~~~~~~~~~v~~~~F~P~PkV~s~vi~l~~~~~-~~-~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~  222 (258)
T PRK14896        145 VMVQYYADVEIVEKVPPGAFSPKPKVDSAVVRLTPREP-KY-EVYDEDFFDDFVKALFQHRRKTLRNALKNSAHISGKED  222 (258)
T ss_pred             HHHHHHeeeEEEEEeChHhCCCCCCceEEEEEEEECCC-CC-CCchHHHHHHHHHHHHccccHHHHHHHhhhccccchhH
Confidence            99999999999999999999999999999999999873 22 2345678999999999999999999999874   3222


Q ss_pred             HHHHHHhC-CCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          351 IEKALGDV-GLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       351 ~~~~l~~~-~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      ...++..+ +.++++||++||++||++|++.+..
T Consensus       223 ~~~~~~~~~~~~~~~R~e~L~~~~~~~l~~~~~~  256 (258)
T PRK14896        223 IKAVVEALPEELLNKRVFQLSPEEIAELANLLYE  256 (258)
T ss_pred             HHHHHHHcCCCCcCCCCccCCHHHHHHHHHHHHh
Confidence            34445665 4557999999999999999998754

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=100.00  E-value=1.2e-43  Score=323.41  Aligned_cols=257  Identities=34%  Similarity=0.482  Sum_probs=229.3

Q ss_pred             HhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-
Q 016715          109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-  187 (384)
Q Consensus       109 ~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-  187 (384)
                      ...+..+++.+|||++.++.+++.|++..++++++.|||||+|||.+|..|++.|++|+|+|+|+.|++.+.++..+.+ 
T Consensus        26 ~~~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~  105 (315)
T KOG0820|consen   26 NSGGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK  105 (315)
T ss_pred             cccCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc
Confidence            3456789999999999999999999999999999999999999999999999999999999999999999999987643 


Q ss_pred             --CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCC
Q 016715          188 --QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLR  265 (384)
Q Consensus       188 --~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg  265 (384)
                        .+++++||+++.++              +.||.+|+|+||+|+++++.+|+.++..+.++++|+|+|++.|+. +.||
T Consensus       106 ~~kLqV~~gD~lK~d~--------------P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLv-a~pg  170 (315)
T KOG0820|consen  106 SGKLQVLHGDFLKTDL--------------PRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLV-ARPG  170 (315)
T ss_pred             cceeeEEecccccCCC--------------cccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhc-cCCC
Confidence              79999999999875              478999999999999999999999999999999999999999998 8999


Q ss_pred             CCCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhh-
Q 016715          266 TSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH-  344 (384)
Q Consensus       266 ~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~-  344 (384)
                      ++.|+++|+.+|++.+++.+++|++++|.|+|+|+|++++++|+..+.   +.+..+|+.+++.+|..++|++....+. 
T Consensus       171 d~~Ycrlsin~q~~a~v~~i~KVgknnFrPpPkVessvVriepk~P~p---p~~~~ewdg~lri~F~rkNktl~a~fk~~  247 (315)
T KOG0820|consen  171 DSLYCRLSINVQLLARVTHIMKVGKNNFRPPPKVESSVVRIEPKNPRP---PVDFHEWDGLLRICFLRKNKTLMAPFKSS  247 (315)
T ss_pred             CchhceeehhhHHhhcchhheeecccccCCCCccccceeEeecCCCCC---ccchHHHHHHHHHHHHHHhHHhhcchhhh
Confidence            999999999999999999999999999999999999999999987542   3478899999999999999977443321 


Q ss_pred             -----h-------cC------------hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHhC
Q 016715          345 -----L-------CT------------SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV  384 (384)
Q Consensus       345 -----~-------~~------------~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~~  384 (384)
                           +       ++            .+.+.++|...++ ..+|++.++.+||++|...|+++
T Consensus       248 ~v~~~ie~n~~~~~s~~n~~~~~~~~~~~~~~~il~~~~~-~~~Ra~k~~~~DFlrLL~~f~~~  310 (315)
T KOG0820|consen  248 SVLQKIEKNYKKRESLDNIMIDLDFNLKPKIYNILFAGLL-ADKRARKMTVDDFLRLLLAFNAV  310 (315)
T ss_pred             HHHHHhhhcccccccccccccccccchhHHHHHHHHhcch-hhcccccCCHHHHHHHhhhhhhc
Confidence                 1       11            1335667776665 68999999999999999888753

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=100.00  E-value=1.5e-34  Score=256.17  Aligned_cols=272  Identities=23%  Similarity=0.399  Sum_probs=230.4

Q ss_pred             HHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC
Q 016715          108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI  186 (384)
Q Consensus       108 l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~  186 (384)
                      +.-+.+++++.++|||+.|.++.++|+..++.-..+.|.|||+|.|.+|+.+.+.+. .+..||+|+++++-++...+..
T Consensus        17 i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa   96 (326)
T KOG0821|consen   17 IKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA   96 (326)
T ss_pred             HHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC
Confidence            333445788899999999999999999999988889999999999999999999865 8999999999988877655443


Q ss_pred             -CCeEEEEccccccchhhhhhhHHhhhccC-CCcceEeeccCccccHHHHHHhcccC----CCe----eEEEEEeeHHHH
Q 016715          187 -DQLKVLQEDFVKCHIRSHMLSLFERRKSS-SGFAKVVANIPFNISTDVIKQLLPMG----DIF----SEVVLLLQEETA  256 (384)
Q Consensus       187 -~~v~~~~gD~~~~~~~~~~~~~~~~~~~~-~~~d~Vv~NlPy~i~~~il~~L~~~g----~~~----~~~~~~~qke~a  256 (384)
                       .+..++++|++.+...+++.+-....|.. .+...||+|+||+++++++.++++.-    ..|    ..+.+.+|+|+|
T Consensus        97 ~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~EVA  176 (326)
T KOG0821|consen   97 PGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVA  176 (326)
T ss_pred             CcceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHHHH
Confidence             38899999999998777554333322333 33467899999999999987766531    122    358899999999


Q ss_pred             HHHhcCCCCCCCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCc
Q 016715          257 LRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK  336 (384)
Q Consensus       257 ~rl~~a~pg~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk  336 (384)
                      +|++ ++.|.+..+++||+.|+++++..+|.++..+|.|.|.||.+||+|.|++.+....  ..+....++|+.|+.|.|
T Consensus       177 eRlC-aP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~~--~F~lvEkV~R~vF~~RQK  253 (326)
T KOG0821|consen  177 ERLC-APTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIEQ--PFKLVEKVVRNVFQFRQK  253 (326)
T ss_pred             HHhc-ccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCccccC--CHHHHHHHHHHHHHHHHH
Confidence            9999 7889999999999999999999999999999999999999999999998865432  367888999999999999


Q ss_pred             hHHHHHhhhcChHHH----HHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          337 MLRKSLQHLCTSLEI----EKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       337 ~l~~~l~~~~~~~~~----~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      .+.+.|+.+++.+.-    ..+|+.+.++++.|+.+|+.|||..|++..+
T Consensus       254 Y~~rGl~TL~PeE~r~E~~~~Ll~~~~idpT~r~~~L~iEQf~~LAE~Y~  303 (326)
T KOG0821|consen  254 YCHRGLRTLFPEEQRLESTGRLLELADIDPTLRPRQLSIEQFKSLAEVYR  303 (326)
T ss_pred             HHHccccccCCHHHHHHHHHHHHHHhcCCCccCceeeeHHHHHHHHHHHH
Confidence            999999999976542    5679999999999999999999999998654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=100.00  E-value=2.2e-34  Score=255.11  Aligned_cols=168  Identities=39%  Similarity=0.606  Sum_probs=155.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      +++|++.+++.++++|||||||+|.+|..+++++.+|+++|+|+.+++.+++++...++++++++|+.++++.+      
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~------   75 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK------   75 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccc------
Confidence            56788888888889999999999999999999988999999999999999999876568999999999987643      


Q ss_pred             hhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeeeecccceEEEEeC
Q 016715          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP  289 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~~~~~~~~~~v~  289 (384)
                            ..+|.|++|+||+++++++.++.........+++|+|+|+++|++ ++||++.|+++|+++|++++++.+++|+
T Consensus        76 ------~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~-~~~~~~~y~~lsv~~~~~~~~~~~~~v~  148 (169)
T smart00650       76 ------LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLA-AKPGSKDYGRLSVLLQPYFDVKILFKVP  148 (169)
T ss_pred             ------cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhc-CCCCCCcccHHHHHHHHHeeEEEEEEEC
Confidence                  358999999999999999999998776778999999999999999 8999999999999999999999999999


Q ss_pred             CCCCCCCCCCceEEEEEEEcC
Q 016715          290 RTNFFPQPKVDAAVVTFKLKQ  310 (384)
Q Consensus       290 ~~~F~P~PkV~s~vv~l~~~~  310 (384)
                      +++|+|+|||||+||+|+|++
T Consensus       149 ~~~F~P~PkV~s~~~~~~~~~  169 (169)
T smart00650      149 PEAFRPPPKVDSAVVRLERRP  169 (169)
T ss_pred             hhhCCCCCCceEEEEEEEECc
Confidence            999999999999999999863

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=4.3e-17  Score=146.57  Aligned_cols=143  Identities=20%  Similarity=0.303  Sum_probs=119.6

Q ss_pred             HHHHHHhhC-CCChHHHHHHHHhCCC---CCc-------------ccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCc
Q 016715           89 ACIVCARSQ-DDDYHATIKALNSKGR---FPR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG  151 (384)
Q Consensus        89 ~mv~~~ir~-~~~~~~~~~~l~~~~~---~~~-------------~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G  151 (384)
                      +|+..++|. +..+.+++++|...++   .|.             ...|| +++.|.+..+|++.+.++++++|||||||
T Consensus         4 ~~l~~~lr~~~i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtG   82 (209)
T COG2518           4 RMLVERLRTEGITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQ-TISAPHMVARMLQLLELKPGDRVLEIGTG   82 (209)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCc-eecCcHHHHHHHHHhCCCCCCeEEEECCC
Confidence            677788875 7777999999877543   221             12466 99999999999999999999999999999


Q ss_pred             chHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec-cCcc
Q 016715          152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFN  228 (384)
Q Consensus       152 ~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy~  228 (384)
                      +||.++.|++...+|+++|+++.+++.|++++...  .||.+++||....-..            ..+||.|+.+ -.-.
T Consensus        83 sGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~------------~aPyD~I~Vtaaa~~  150 (209)
T COG2518          83 SGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE------------EAPYDRIIVTAAAPE  150 (209)
T ss_pred             chHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC------------CCCcCEEEEeeccCC
Confidence            99999999999889999999999999999998754  4899999999886332            2689998755 3447


Q ss_pred             ccHHHHHHhcccCCCe
Q 016715          229 ISTDVIKQLLPMGDIF  244 (384)
Q Consensus       229 i~~~il~~L~~~g~~~  244 (384)
                      ++..++++|+++|+++
T Consensus       151 vP~~Ll~QL~~gGrlv  166 (209)
T COG2518         151 VPEALLDQLKPGGRLV  166 (209)
T ss_pred             CCHHHHHhcccCCEEE
Confidence            7789999999999874

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.68  E-value=4.2e-16  Score=142.28  Aligned_cols=145  Identities=23%  Similarity=0.353  Sum_probs=110.4

Q ss_pred             HHHHHHHHhhCC-CChHHHHHHHHhCCC---CCccc-------------CCCcccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 016715           87 ASACIVCARSQD-DDYHATIKALNSKGR---FPRKS-------------LGQHYMLNSEINDQLAAAAAVQEGDIVLEIG  149 (384)
Q Consensus        87 r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~~-------------~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG  149 (384)
                      ++.||+++++.+ ..+.++.++|...++   .|...             .|+ +++.|.+..+|++.+.+++|++|||||
T Consensus         2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~-~is~P~~~a~~l~~L~l~pg~~VLeIG   80 (209)
T PF01135_consen    2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQ-TISAPSMVARMLEALDLKPGDRVLEIG   80 (209)
T ss_dssp             HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTE-EE--HHHHHHHHHHTTC-TT-EEEEES
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeeccee-echHHHHHHHHHHHHhcCCCCEEEEec
Confidence            678999999875 899999999987543   33321             244 788999999999999999999999999


Q ss_pred             CcchHHHHHHHHc-CC--cEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715          150 PGTGSLTNVLLNA-GA--TVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       150 ~G~G~lt~~La~~-~~--~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                      ||+|++|+.|+.. +.  .|++||+++.+++.|++++..  ..|+.++++|.......            ..+||.|+.+
T Consensus        81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~------------~apfD~I~v~  148 (209)
T PF01135_consen   81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE------------EAPFDRIIVT  148 (209)
T ss_dssp             -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG------------G-SEEEEEES
T ss_pred             CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc------------CCCcCEEEEe
Confidence            9999999999997 43  699999999999999999874  34999999998775332            2679999876


Q ss_pred             cCc-cccHHHHHHhcccCCCe
Q 016715          225 IPF-NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       225 lPy-~i~~~il~~L~~~g~~~  244 (384)
                      ... .++..++.+|+++|+++
T Consensus       149 ~a~~~ip~~l~~qL~~gGrLV  169 (209)
T PF01135_consen  149 AAVPEIPEALLEQLKPGGRLV  169 (209)
T ss_dssp             SBBSS--HHHHHTEEEEEEEE
T ss_pred             eccchHHHHHHHhcCCCcEEE
Confidence            433 77789999999988764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.64  E-value=4.5e-15  Score=136.25  Aligned_cols=146  Identities=21%  Similarity=0.253  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhhC-CCChHHHHHHHHhCCC---CCcc-------------cCCCcccCCHHHHHHHHHHhcCCCCCEEEEE
Q 016715           86 AASACIVCARSQ-DDDYHATIKALNSKGR---FPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (384)
Q Consensus        86 ~r~~mv~~~ir~-~~~~~~~~~~l~~~~~---~~~~-------------~~gq~fl~~~~~~~~il~~l~~~~~~~VLEI  148 (384)
                      .++.||+.++|. +.++.++.++|...++   .|..             ..|| .++.|.+...+++.+.+.++++||||
T Consensus         5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~-~~~~p~~~~~~~~~l~~~~g~~VLdI   83 (212)
T PRK13942          5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQ-TISAIHMVAIMCELLDLKEGMKVLEI   83 (212)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCC-EeCcHHHHHHHHHHcCCCCcCEEEEE
Confidence            457899999997 5999999999986543   2221             2355 67899999999999999999999999


Q ss_pred             cCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715          149 GPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (384)
Q Consensus       149 G~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~  223 (384)
                      |||+|+++..+++. +  .+|+++|+++++++.+++++...  ++++++++|+.+....            ...||+|+.
T Consensus        84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~------------~~~fD~I~~  151 (212)
T PRK13942         84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE------------NAPYDRIYV  151 (212)
T ss_pred             CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc------------CCCcCEEEE
Confidence            99999999999886 2  59999999999999999988643  4899999999875432            257999987


Q ss_pred             ccC-ccccHHHHHHhcccCCCe
Q 016715          224 NIP-FNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       224 NlP-y~i~~~il~~L~~~g~~~  244 (384)
                      +.. -++...+..+|+++|.++
T Consensus       152 ~~~~~~~~~~l~~~LkpgG~lv  173 (212)
T PRK13942        152 TAAGPDIPKPLIEQLKDGGIMV  173 (212)
T ss_pred             CCCcccchHHHHHhhCCCcEEE
Confidence            643 255667788888888654

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.63  E-value=7.1e-15  Score=135.19  Aligned_cols=148  Identities=21%  Similarity=0.247  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHhhCC-CChHHHHHHHHhCCC---CCcc-----------cCC-CcccCCHHHHHHHHHHhcCCCCCEEEEE
Q 016715           85 GAASACIVCARSQD-DDYHATIKALNSKGR---FPRK-----------SLG-QHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (384)
Q Consensus        85 ~~r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~-----------~~g-q~fl~~~~~~~~il~~l~~~~~~~VLEI  148 (384)
                      ..|+.||+.+++++ +++..+.++|...++   .+..           .+| .+.+..+.+.+.+++.+.+.++++||||
T Consensus         5 ~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDi   84 (215)
T TIGR00080         5 SQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEI   84 (215)
T ss_pred             HHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEE
Confidence            45788999999975 888999999886543   2221           122 2367789999999999999999999999


Q ss_pred             cCcchHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715          149 GPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (384)
Q Consensus       149 G~G~G~lt~~La~~~~---~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~  223 (384)
                      |||+|+++..+++...   +|+++|+++.+++.|++++...  ++++++++|+.+....            ...||.|+.
T Consensus        85 G~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~------------~~~fD~Ii~  152 (215)
T TIGR00080        85 GTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP------------LAPYDRIYV  152 (215)
T ss_pred             CCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc------------cCCCCEEEE
Confidence            9999999999998743   5999999999999999988643  4899999999875322            257999987


Q ss_pred             ccC-ccccHHHHHHhcccCCCe
Q 016715          224 NIP-FNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       224 NlP-y~i~~~il~~L~~~g~~~  244 (384)
                      +.+ .++...+...|.++|.++
T Consensus       153 ~~~~~~~~~~~~~~L~~gG~lv  174 (215)
T TIGR00080       153 TAAGPKIPEALIDQLKEGGILV  174 (215)
T ss_pred             cCCcccccHHHHHhcCcCcEEE
Confidence            754 466777788888877654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.60  E-value=2.1e-14  Score=131.10  Aligned_cols=145  Identities=16%  Similarity=0.181  Sum_probs=114.0

Q ss_pred             HHHHHHHHhhCC-CChHHHHHHHHhCCC---CCcc-------------cCCCcccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 016715           87 ASACIVCARSQD-DDYHATIKALNSKGR---FPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG  149 (384)
Q Consensus        87 r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~-------------~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG  149 (384)
                      |+.||+.+.+.+ .++.++.++|.+.++   .|..             ..|+ .+..+.+.+.+++.+.+.++++|||||
T Consensus         2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG   80 (205)
T PRK13944          2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGA-TISAPHMVAMMCELIEPRPGMKILEVG   80 (205)
T ss_pred             HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCC-EechHHHHHHHHHhcCCCCCCEEEEEC
Confidence            567999888874 788999999877543   2322             1244 566788999999999988999999999


Q ss_pred             CcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715          150 PGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (384)
Q Consensus       150 ~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~  223 (384)
                      ||+|+.+..+++.   +.+|+++|+++.+++.+++++...   ++++++++|+.+....            ...||.|++
T Consensus        81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------------~~~fD~Ii~  148 (205)
T PRK13944         81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------------HAPFDAIIV  148 (205)
T ss_pred             cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------------CCCccEEEE
Confidence            9999999999876   358999999999999999887643   2589999999875322            257999998


Q ss_pred             ccCc-cccHHHHHHhcccCCCe
Q 016715          224 NIPF-NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       224 NlPy-~i~~~il~~L~~~g~~~  244 (384)
                      +... ++...+..+|.++|.++
T Consensus       149 ~~~~~~~~~~l~~~L~~gG~lv  170 (205)
T PRK13944        149 TAAASTIPSALVRQLKDGGVLV  170 (205)
T ss_pred             ccCcchhhHHHHHhcCcCcEEE
Confidence            8664 66677788888887653

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=2e-13  Score=120.16  Aligned_cols=160  Identities=23%  Similarity=0.342  Sum_probs=121.0

Q ss_pred             CCCcccCCCcccCCHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC-CC
Q 016715          113 RFPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS-ID  187 (384)
Q Consensus       113 ~~~~~~~gq~fl~~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~-~~  187 (384)
                      ..|+.++.| |.+++.++..|+..+.   .-.|.+|+|+|||||.++...+-.|+ .|+|||+|+++++.++++... .+
T Consensus        15 ~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g   93 (198)
T COG2263          15 PNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLG   93 (198)
T ss_pred             CCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCC
Confidence            377888899 9999999999888663   33677999999999999999999986 899999999999999999874 35


Q ss_pred             CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc-----cHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcC
Q 016715          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-----STDVIKQLLPMGDIFSEVVLLLQEETALRLVEP  262 (384)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i-----~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a  262 (384)
                      ++.++.+|+.++.               ..+|.++.|+||..     -.+.+..-++-...+-.++..-.+++..+.. +
T Consensus        94 ~v~f~~~dv~~~~---------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~-~  157 (198)
T COG2263          94 DVEFVVADVSDFR---------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFA-A  157 (198)
T ss_pred             ceEEEEcchhhcC---------------CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHH-H
Confidence            8999999999875               57889999999943     3466666666666665566555566777766 2


Q ss_pred             CCCCCCcccceeeeeecccceEEEEeCCCCCCCCCCC
Q 016715          263 SLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV  299 (384)
Q Consensus       263 ~pg~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV  299 (384)
                      .-|.    .....      -...|.+|+...+..-+|
T Consensus       158 ~~G~----~v~~~------~~~~~~iP~~y~fH~k~~  184 (198)
T COG2263         158 DLGG----TVTHI------ERARFPIPRTYPFHRKRV  184 (198)
T ss_pred             hcCC----eEEEE------EEEEEecCccCchhhhee
Confidence            2221    11111      145677888887766444

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.55  E-value=1.5e-13  Score=126.06  Aligned_cols=150  Identities=17%  Similarity=0.247  Sum_probs=114.7

Q ss_pred             chHHHHHHHHHHHhhC-CCChHHHHHHHHhCCC---CCccc-----------CC-CcccCCHHHHHHHHHHhcCCCCCEE
Q 016715           82 VQKGAASACIVCARSQ-DDDYHATIKALNSKGR---FPRKS-----------LG-QHYMLNSEINDQLAAAAAVQEGDIV  145 (384)
Q Consensus        82 ~~~~~r~~mv~~~ir~-~~~~~~~~~~l~~~~~---~~~~~-----------~g-q~fl~~~~~~~~il~~l~~~~~~~V  145 (384)
                      ...+.|++||+ ++++ +...+.+.++|...++   .|..+           ++ ..+++.+.+..++++.+.+.++.+|
T Consensus         4 ~~~~~~~~~v~-~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~V   82 (212)
T PRK00312          4 MESERFARLVL-RLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRV   82 (212)
T ss_pred             hHHHHHHHHHH-HHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEE
Confidence            34577999999 7775 7888899999887643   23211           11 1257889999999999999999999


Q ss_pred             EEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (384)
Q Consensus       146 LEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~  223 (384)
                      ||||||+|+++..+++.+.+|+++|+++.+++.+++++...  .+++++++|+.+....            .+.||.|+.
T Consensus        83 LeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------------~~~fD~I~~  150 (212)
T PRK00312         83 LEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA------------YAPFDRILV  150 (212)
T ss_pred             EEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc------------CCCcCEEEE
Confidence            99999999999988888779999999999999999987643  4799999998653211            257999988


Q ss_pred             ccCc-cccHHHHHHhcccCCCe
Q 016715          224 NIPF-NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       224 NlPy-~i~~~il~~L~~~g~~~  244 (384)
                      +.+. ++...+...|.++|.++
T Consensus       151 ~~~~~~~~~~l~~~L~~gG~lv  172 (212)
T PRK00312        151 TAAAPEIPRALLEQLKEGGILV  172 (212)
T ss_pred             ccCchhhhHHHHHhcCCCcEEE
Confidence            7544 45556666777766543

>PHA03412 putative methyltransferase; Provisional

Probab=99.41  E-value=1.5e-12  Score=119.71  Aligned_cols=104  Identities=13%  Similarity=0.248  Sum_probs=83.8

Q ss_pred             HHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-----CCcEEEEeCCHHHHHHHHHH
Q 016715          108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       108 l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-----~~~V~avE~d~~~~~~a~~~  182 (384)
                      +.+.....++..|| |.++..++..++...  ..+.+|||+|||+|.++..+++.     ..+|++||+|+.+++.|+++
T Consensus        19 ~~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n   95 (241)
T PHA03412         19 FHEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI   95 (241)
T ss_pred             cccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh
Confidence            33434466778899 999999988876432  24679999999999999999874     35899999999999999987


Q ss_pred             hcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          183 FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       183 ~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      .   +++.++++|+...++.             +.||+||+|+||...
T Consensus        96 ~---~~~~~~~~D~~~~~~~-------------~~FDlIIsNPPY~~~  127 (241)
T PHA03412         96 V---PEATWINADALTTEFD-------------TLFDMAISNPPFGKI  127 (241)
T ss_pred             c---cCCEEEEcchhccccc-------------CCccEEEECCCCCCc
Confidence            6   3688999999875432             479999999999764

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.35  E-value=1.8e-11  Score=118.81  Aligned_cols=145  Identities=14%  Similarity=0.158  Sum_probs=107.3

Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHhCCC---CCccc-----C----------CC--cccCCHHHHHHHHHHhcCCCCCEEE
Q 016715           87 ASACIVCARSQDDDYHATIKALNSKGR---FPRKS-----L----------GQ--HYMLNSEINDQLAAAAAVQEGDIVL  146 (384)
Q Consensus        87 r~~mv~~~ir~~~~~~~~~~~l~~~~~---~~~~~-----~----------gq--~fl~~~~~~~~il~~l~~~~~~~VL  146 (384)
                      |++||+.....+.++ ++.++|.+.++   .|...     +          |.  .+.+++.+...+++.+++.++++||
T Consensus         7 ~~~lv~~l~~~gv~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~i~~g~~VL   85 (322)
T PRK13943          7 REKLFWILKKYGISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVL   85 (322)
T ss_pred             HHHHHHHHHHcCCcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcCCCCCCEEE
Confidence            567888443457776 88888876543   22211     1          21  3667899999999999998999999


Q ss_pred             EEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          147 EIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       147 EIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      |||||+|+++..+++..   ..|+++|+++.+++.|++++...  +++.++++|+.+.....            ..||.|
T Consensus        86 DIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~------------~~fD~I  153 (322)
T PRK13943         86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF------------APYDVI  153 (322)
T ss_pred             EEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc------------CCccEE
Confidence            99999999999999863   36999999999999999887643  47999999987654321            468999


Q ss_pred             eeccCc-cccHHHHHHhcccCCCe
Q 016715          222 VANIPF-NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       222 v~NlPy-~i~~~il~~L~~~g~~~  244 (384)
                      +.+... ++...+..+|.++|.++
T Consensus       154 i~~~g~~~ip~~~~~~LkpgG~Lv  177 (322)
T PRK13943        154 FVTVGVDEVPETWFTQLKEGGRVI  177 (322)
T ss_pred             EECCchHHhHHHHHHhcCCCCEEE
Confidence            875332 34456677787777653

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.35  E-value=5.6e-12  Score=103.08  Aligned_cols=73  Identities=30%  Similarity=0.426  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCcchHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhc---CCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~--~~~~V~avE~d~~~~~~a~~~~~---~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      |+.+|||||||+|.++..+++  .+.+|+|+|+|+.+++.++++..   ..++++++++|+ .....           ..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-----------~~   68 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-----------FL   68 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-----------TS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-----------cC
Confidence            578999999999999999999  58899999999999999999982   246999999999 32221           22


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +.||.|+++.
T Consensus        69 ~~~D~v~~~~   78 (112)
T PF12847_consen   69 EPFDLVICSG   78 (112)
T ss_dssp             SCEEEEEECS
T ss_pred             CCCCEEEECC
Confidence            5799999877

...

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=7.5e-12  Score=115.91  Aligned_cols=100  Identities=20%  Similarity=0.327  Sum_probs=81.1

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccch
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~  201 (384)
                      +....+.+++++...+|.+|||||||||.++..+++..  ++|+++|+++.|++.++++....  .++++++||++++|+
T Consensus        36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf  115 (238)
T COG2226          36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF  115 (238)
T ss_pred             hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence            34556677777777789999999999999999999984  69999999999999999998752  259999999999999


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCccccHHHHHHh
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL  237 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L  237 (384)
                      ++            +.||.|....-....+++-..|
T Consensus       116 ~D------------~sFD~vt~~fglrnv~d~~~aL  139 (238)
T COG2226         116 PD------------NSFDAVTISFGLRNVTDIDKAL  139 (238)
T ss_pred             CC------------CccCEEEeeehhhcCCCHHHHH
Confidence            87            7899998765554444443333

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.28  E-value=8.5e-12  Score=115.67  Aligned_cols=87  Identities=20%  Similarity=0.345  Sum_probs=71.9

Q ss_pred             HHhcCCCCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHH
Q 016715          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      ++.......+|||+|||+|.++..++++ . +++++||+++++++.|+++++.+   ++++++++|+.++....      
T Consensus        38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~------  111 (248)
T COG4123          38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL------  111 (248)
T ss_pred             hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc------
Confidence            3444445789999999999999999998 4 79999999999999999998754   48999999999876442      


Q ss_pred             hhhccCCCcceEeeccCccccH
Q 016715          210 ERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                          ....||.||+|+||+-..
T Consensus       112 ----~~~~fD~Ii~NPPyf~~~  129 (248)
T COG4123         112 ----VFASFDLIICNPPYFKQG  129 (248)
T ss_pred             ----cccccCEEEeCCCCCCCc
Confidence                224699999999996543

>PLN02244 tocopherol O-methyltransferase

Probab=99.27  E-value=2.8e-11  Score=118.88  Aligned_cols=106  Identities=18%  Similarity=0.200  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHhcC-----CCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          127 SEINDQLAAAAAV-----QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       127 ~~~~~~il~~l~~-----~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      .++++.+++++.+     .++++|||||||+|.++..+++. +++|+|||+++.+++.++++....   ++++++.+|+.
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~  178 (340)
T PLN02244         99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL  178 (340)
T ss_pred             HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence            4567778888876     67889999999999999999986 789999999999999999876532   47999999999


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCc-cc------cHHHHHHhcccCCCe
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF-NI------STDVIKQLLPMGDIF  244 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy-~i------~~~il~~L~~~g~~~  244 (384)
                      ++++++            +.||+|+++..+ ++      ..++.+.|+++|.++
T Consensus       179 ~~~~~~------------~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lv  220 (340)
T PLN02244        179 NQPFED------------GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRII  220 (340)
T ss_pred             cCCCCC------------CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEE
Confidence            987654            689999986543 22      224445666666543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.27  E-value=4.1e-11  Score=108.74  Aligned_cols=117  Identities=16%  Similarity=0.220  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715          125 LNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (384)
Q Consensus       125 ~~~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~  200 (384)
                      +...+.+.+++++.. .++.+|||+|||+|.++..++.+ ..+|+++|+++.+++.+++++..+  .+++++++|+.+..
T Consensus        36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l  115 (199)
T PRK10909         36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL  115 (199)
T ss_pred             CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence            345666777777643 46789999999999999976655 459999999999999999987643  37999999987632


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCcc--ccHHHHHHhcccCCCeeEEEEEee
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDIFSEVVLLLQ  252 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~--i~~~il~~L~~~g~~~~~~~~~~q  252 (384)
                      ..           ....||+|+.|+||.  ....++..|...+.+-...++.+.
T Consensus       116 ~~-----------~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909        116 AQ-----------PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             hh-----------cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence            11           124699999999984  334566666654433333344443

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.25  E-value=4e-11  Score=113.66  Aligned_cols=119  Identities=20%  Similarity=0.332  Sum_probs=92.7

Q ss_pred             CCcccCCCcccCCH--HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeE
Q 016715          114 FPRKSLGQHYMLNS--EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLK  190 (384)
Q Consensus       114 ~~~~~~gq~fl~~~--~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~  190 (384)
                      +-..-||.+|+...  .....+++.+.+.++.+|||||||+|..+..++.. +++|+++|+++.+++.++++....+++.
T Consensus        23 ~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~  102 (263)
T PTZ00098         23 AYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIE  102 (263)
T ss_pred             hHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceE
Confidence            44566888888774  44788999999999999999999999999999875 6799999999999999999876556899


Q ss_pred             EEEccccccchhhhhhhHHhhhccCCCcceEeeccC-cccc--------HHHHHHhcccCCCe
Q 016715          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIS--------TDVIKQLLPMGDIF  244 (384)
Q Consensus       191 ~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP-y~i~--------~~il~~L~~~g~~~  244 (384)
                      ++.+|+.+.++++            +.||+|+++.. +++.        ..+...|+++|.++
T Consensus       103 ~~~~D~~~~~~~~------------~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv  153 (263)
T PTZ00098        103 FEANDILKKDFPE------------NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL  153 (263)
T ss_pred             EEECCcccCCCCC------------CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            9999998876643            67999998532 2332        23344566666543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.25  E-value=1.2e-11  Score=115.09  Aligned_cols=105  Identities=20%  Similarity=0.363  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccch
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~  201 (384)
                      ....+.+++.+...++.+|||+|||||.++..+++. +  .+|+++|+++.|++.++++....  .+++++++|++++++
T Consensus        33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~  112 (233)
T PF01209_consen   33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF  112 (233)
T ss_dssp             ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence            344556777777888999999999999999999986 3  58999999999999999987643  489999999999998


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCcc-------ccHHHHHHhcccCCC
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFN-------ISTDVIKQLLPMGDI  243 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~-------i~~~il~~L~~~g~~  243 (384)
                      ++            +.||.|++..-++       ...++.+.|+++|.+
T Consensus       113 ~d------------~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l  149 (233)
T PF01209_consen  113 PD------------NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRL  149 (233)
T ss_dssp             -T------------T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEE
T ss_pred             CC------------CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEE
Confidence            76            6899998654332       223555566666654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.25  E-value=3e-11  Score=107.06  Aligned_cols=88  Identities=23%  Similarity=0.389  Sum_probs=68.2

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhhh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~  206 (384)
                      ..|++.+...++.+|||+|||+|.++..+++.+.  +|+++|+++.+++.+++++..++  +++++++|..+...     
T Consensus        21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~-----   95 (170)
T PF05175_consen   21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP-----   95 (170)
T ss_dssp             HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC-----
T ss_pred             HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc-----
Confidence            3455555544678999999999999999999855  59999999999999999987543  49999999876432     


Q ss_pred             hHHhhhccCCCcceEeeccCccccH
Q 016715          207 SLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                              ...||.|++|+|++...
T Consensus        96 --------~~~fD~Iv~NPP~~~~~  112 (170)
T PF05175_consen   96 --------DGKFDLIVSNPPFHAGG  112 (170)
T ss_dssp             --------TTCEEEEEE---SBTTS
T ss_pred             --------ccceeEEEEccchhccc
Confidence                    26899999999996553

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PHA03411 putative methyltransferase; Provisional

Probab=99.25  E-value=3e-11  Score=113.59  Aligned_cols=94  Identities=15%  Similarity=0.289  Sum_probs=77.2

Q ss_pred             cCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcc
Q 016715          118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQED  195 (384)
Q Consensus       118 ~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD  195 (384)
                      ..|| |.+++.++..++  +....+.+|||+|||+|.++..++.+  +.+|+++|+++.+++.+++++   ++++++++|
T Consensus        44 ~~G~-FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D  117 (279)
T PHA03411         44 GSGA-FFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSD  117 (279)
T ss_pred             Ccee-EcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECc
Confidence            3688 999999986654  23345679999999999999988876  469999999999999999875   478999999


Q ss_pred             ccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      +.++..             ...||.||+|+||...
T Consensus       118 ~~e~~~-------------~~kFDlIIsNPPF~~l  139 (279)
T PHA03411        118 VFEFES-------------NEKFDVVISNPPFGKI  139 (279)
T ss_pred             hhhhcc-------------cCCCcEEEEcCCcccc
Confidence            987642             1579999999999763

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.25  E-value=8e-11  Score=105.05  Aligned_cols=82  Identities=29%  Similarity=0.353  Sum_probs=67.6

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhh
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      +.+.+...++++|||+|||+|.++..++..+.+|+++|+++.+++.+++++..++ +++++.+|+.+..           
T Consensus        11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-----------   79 (179)
T TIGR00537        11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-----------   79 (179)
T ss_pred             HHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-----------
Confidence            3344444566899999999999999999988899999999999999999876433 6888999987642           


Q ss_pred             hccCCCcceEeeccCcc
Q 016715          212 RKSSSGFAKVVANIPFN  228 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~  228 (384)
                         .+.||.|++|+||.
T Consensus        80 ---~~~fD~Vi~n~p~~   93 (179)
T TIGR00537        80 ---RGKFDVILFNPPYL   93 (179)
T ss_pred             ---CCcccEEEECCCCC
Confidence               14799999999995

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14967 putative methyltransferase; Provisional

Probab=99.24  E-value=4.7e-11  Score=110.41  Aligned_cols=92  Identities=24%  Similarity=0.336  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhh
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS  203 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~  203 (384)
                      +..++..++..+...++++|||+|||+|.++..++..+. +|+++|+++.+++.+++++...+ ++.++++|+.+.. . 
T Consensus        21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~-~-   98 (223)
T PRK14967         21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV-E-   98 (223)
T ss_pred             cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc-c-
Confidence            445566666666677889999999999999999998865 99999999999999998876432 6888899987631 1 


Q ss_pred             hhhhHHhhhccCCCcceEeeccCcccc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                                 .+.||.|++|+||...
T Consensus        99 -----------~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         99 -----------FRPFDVVVSNPPYVPA  114 (223)
T ss_pred             -----------CCCeeEEEECCCCCCC
Confidence                       2579999999999654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.23  E-value=4e-11  Score=112.65  Aligned_cols=90  Identities=20%  Similarity=0.243  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (384)
                      ...+.+.+++.+...++.+|||+|||+|.++..++..+.+|+++|+++.|++.++++..   ...++++|+.++++.+  
T Consensus        27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~~~--  101 (251)
T PRK10258         27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLPLAT--  101 (251)
T ss_pred             HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCcCCC--
Confidence            34567777888876667899999999999999999889999999999999999998753   3568899998887643  


Q ss_pred             hhHHhhhccCCCcceEeeccCcccc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                                +.||.|++|.++++.
T Consensus       102 ----------~~fD~V~s~~~l~~~  116 (251)
T PRK10258        102 ----------ATFDLAWSNLAVQWC  116 (251)
T ss_pred             ----------CcEEEEEECchhhhc
Confidence                      579999999887654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.21  E-value=7.2e-11  Score=115.52  Aligned_cols=96  Identities=24%  Similarity=0.272  Sum_probs=83.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~  200 (384)
                      ...++.+...|++.+...+++.|||+|||+|.++..++..+.+++|+|+|+.|++.++.++...  .++.++++|+.+++
T Consensus       164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~  243 (329)
T TIGR01177       164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP  243 (329)
T ss_pred             CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence            4467889999999888889999999999999999998888999999999999999999987643  35889999999887


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      +.+            +.+|.|++|+||...
T Consensus       244 ~~~------------~~~D~Iv~dPPyg~~  261 (329)
T TIGR01177       244 LSS------------ESVDAIATDPPYGRS  261 (329)
T ss_pred             ccc------------CCCCEEEECCCCcCc
Confidence            543            579999999999653

This family is found exclusively in the Archaea.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=7.5e-11  Score=112.17  Aligned_cols=127  Identities=22%  Similarity=0.273  Sum_probs=91.4

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-C--e
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q--L  189 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-~--v  189 (384)
                      .|.-.||+.+.-...+.-+.++.... ++.+|||+|||+|.|+.+.++.|+ +|+|+|+|+-+++.+++|...++ .  +
T Consensus       136 DPGlAFGTG~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~  214 (300)
T COG2264         136 DPGLAFGTGTHPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV  214 (300)
T ss_pred             ccccccCCCCChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhh
Confidence            45557888777666666666665544 789999999999999999999988 59999999999999999987643 1  2


Q ss_pred             EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc----cccHHHHHHhcccCCCeeEEEEEeeHH
Q 016715          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF----NISTDVIKQLLPMGDIFSEVVLLLQEE  254 (384)
Q Consensus       190 ~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy----~i~~~il~~L~~~g~~~~~~~~~~qke  254 (384)
                      +....+..+.+             ...+||+||+|+=-    ...+++...++++|.++...++--|.+
T Consensus       215 ~~~~~~~~~~~-------------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~  270 (300)
T COG2264         215 QAKGFLLLEVP-------------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAE  270 (300)
T ss_pred             hcccccchhhc-------------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHH
Confidence            22223333322             12589999999722    344566778888888777666655544

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.21  E-value=2.7e-11  Score=99.93  Aligned_cols=79  Identities=28%  Similarity=0.407  Sum_probs=64.3

Q ss_pred             CCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      |.+|||+|||+|.+...+++.+ .+++++|+|+..++.++.++...   ++++++++|+.+.....          ..+.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----------~~~~   70 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----------PDGK   70 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----------TTT-
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----------cCce
Confidence            5689999999999999999998 89999999999999999987643   47999999998875110          2378


Q ss_pred             cceEeeccCcccc
Q 016715          218 FAKVVANIPFNIS  230 (384)
Q Consensus       218 ~d~Vv~NlPy~i~  230 (384)
                      +|+|++|+||...
T Consensus        71 ~D~Iv~npP~~~~   83 (117)
T PF13659_consen   71 FDLIVTNPPYGPR   83 (117)
T ss_dssp             EEEEEE--STTSB
T ss_pred             eEEEEECCCCccc
Confidence            9999999999643

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.20  E-value=1.4e-10  Score=107.42  Aligned_cols=92  Identities=14%  Similarity=0.271  Sum_probs=76.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccc
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCH  200 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~  200 (384)
                      .....+.+++.+.+.++++|||+|||+|..+..+++.   +.+|+|+|+++.+++.++++...  .++++++++|+.+++
T Consensus        30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  109 (231)
T TIGR02752        30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP  109 (231)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence            4555678888888888999999999999999999876   35899999999999999988753  248999999998876


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      +++            +.+|.|+++..++.
T Consensus       110 ~~~------------~~fD~V~~~~~l~~  126 (231)
T TIGR02752       110 FDD------------NSFDYVTIGFGLRN  126 (231)
T ss_pred             CCC------------CCccEEEEeccccc
Confidence            543            57999998766543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.20  E-value=8.5e-11  Score=106.49  Aligned_cols=87  Identities=17%  Similarity=0.188  Sum_probs=68.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhH
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      ...+++.+...++.+|||+|||+|.++..++++|.+|+|+|+++.+++.++++....+ ++++..+|+...+++      
T Consensus        19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------   92 (195)
T TIGR00477        19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN------   92 (195)
T ss_pred             hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc------
Confidence            3455566666667899999999999999999999999999999999999988765322 467777777654432      


Q ss_pred             HhhhccCCCcceEeeccCccc
Q 016715          209 FERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                             +.+|.|+++.+++.
T Consensus        93 -------~~fD~I~~~~~~~~  106 (195)
T TIGR00477        93 -------EDYDFIFSTVVFMF  106 (195)
T ss_pred             -------CCCCEEEEeccccc
Confidence                   46999999987753

Part of a tellurite-reducing operon tehA and tehB

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.19  E-value=2e-10  Score=101.59  Aligned_cols=122  Identities=25%  Similarity=0.305  Sum_probs=94.5

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKC  199 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~  199 (384)
                      ++.+++..-.+..|.+.+++.++|||||||.+|..++..  ..+|+|+|.|+++++..++|.+.  .+|++++.||+.+.
T Consensus        17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~   96 (187)
T COG2242          17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA   96 (187)
T ss_pred             CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence            688899999999999999999999999999999999954  56999999999999999998864  46999999999886


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCc---cccHHHHHHhcccCCCeeEEEEEeeHHHHHHHh
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPF---NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV  260 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy---~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~  260 (384)
                      ...            .+.+|.||-+=--   .+......+|.++|+++..++   +-|....++
T Consensus        97 L~~------------~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai---tlE~~~~a~  145 (187)
T COG2242          97 LPD------------LPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI---TLETLAKAL  145 (187)
T ss_pred             hcC------------CCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee---cHHHHHHHH
Confidence            432            1468888754222   223344556777787765444   446666655

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.19  E-value=9.6e-11  Score=115.93  Aligned_cols=87  Identities=17%  Similarity=0.250  Sum_probs=70.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEccccccchh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-----~~v~~~~gD~~~~~~~  202 (384)
                      .+.+++.+....+.+|||+|||+|.++..++++  +.+|+++|+|+.+++.++++++.+     .+++++.+|+.+..  
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~--  294 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV--  294 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC--
Confidence            455777777655679999999999999999987  469999999999999999987533     26788888886532  


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCccc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                                 ....||.|++|+||+.
T Consensus       295 -----------~~~~fDlIlsNPPfh~  310 (378)
T PRK15001        295 -----------EPFRFNAVLCNPPFHQ  310 (378)
T ss_pred             -----------CCCCEEEEEECcCccc
Confidence                       1247999999999964

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.19  E-value=1.4e-10  Score=105.29  Aligned_cols=84  Identities=18%  Similarity=0.223  Sum_probs=68.5

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHH
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      .+++.+...++.+|||+|||+|..+..|+++|.+|+|+|+++.+++.++++....  .+++++.+|+.+.++.       
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------   93 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-------   93 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-------
Confidence            3445555566789999999999999999999999999999999999999876542  3688889998876542       


Q ss_pred             hhhccCCCcceEeeccCcc
Q 016715          210 ERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~NlPy~  228 (384)
                            +.||.|+++..++
T Consensus        94 ------~~fD~I~~~~~~~  106 (197)
T PRK11207         94 ------GEYDFILSTVVLM  106 (197)
T ss_pred             ------CCcCEEEEecchh
Confidence                  4699999987654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.19  E-value=2.6e-10  Score=113.29  Aligned_cols=79  Identities=18%  Similarity=0.295  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.++++....+ +++++++|+.+..++.           .+
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~-----------~~  318 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS-----------EG  318 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccccc-----------CC
Confidence            35679999999999999999875  5699999999999999999986543 7999999987643221           14


Q ss_pred             CcceEeeccCccc
Q 016715          217 GFAKVVANIPFNI  229 (384)
Q Consensus       217 ~~d~Vv~NlPy~i  229 (384)
                      .||.|++|+||.-
T Consensus       319 ~FDLIVSNPPYI~  331 (423)
T PRK14966        319 KWDIIVSNPPYIE  331 (423)
T ss_pred             CccEEEECCCCCC
Confidence            6999999999943

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.18  E-value=1.6e-10  Score=109.40  Aligned_cols=88  Identities=15%  Similarity=0.257  Sum_probs=71.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhc-----CCCCeEEEEccccccc
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFA-----SIDQLKVLQEDFVKCH  200 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~-----~~~~v~~~~gD~~~~~  200 (384)
                      ....+++.+.+.++++|||+|||+|.++..+++. +  .+|+|+|++++|++.|+++..     ..++++++++|+.+++
T Consensus        61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp  140 (261)
T PLN02233         61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP  140 (261)
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence            3445566677778899999999999999999886 3  489999999999999987653     1248999999999988


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      +++            +.||.|+++..++
T Consensus       141 ~~~------------~sfD~V~~~~~l~  156 (261)
T PLN02233        141 FDD------------CYFDAITMGYGLR  156 (261)
T ss_pred             CCC------------CCEeEEEEecccc
Confidence            754            6799998876543

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.17  E-value=1.2e-10  Score=100.39  Aligned_cols=101  Identities=23%  Similarity=0.426  Sum_probs=85.3

Q ss_pred             CcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHhcCCCCeEE
Q 016715          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASIDQLKV  191 (384)
Q Consensus       115 ~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~---~V~avE~d~~~~~~a~~~~~~~~~v~~  191 (384)
                      ..+.-|.-.-+++.++++|++.+++..|.-|||+|+|||.+|.+++++|.   .++++|.|++++.++.+.+   +.+++
T Consensus        22 ~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~i   98 (194)
T COG3963          22 NPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNI   98 (194)
T ss_pred             CCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccc
Confidence            34445654557888999999999999999999999999999999999854   7999999999999999887   57789


Q ss_pred             EEccccccc--hhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          192 LQEDFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       192 ~~gD~~~~~--~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ++||+.++.  +.+         +.++.+|.||+.+|+
T Consensus        99 i~gda~~l~~~l~e---------~~gq~~D~viS~lPl  127 (194)
T COG3963          99 INGDAFDLRTTLGE---------HKGQFFDSVISGLPL  127 (194)
T ss_pred             cccchhhHHHHHhh---------cCCCeeeeEEecccc
Confidence            999999887  333         345789999998876

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.16  E-value=1.8e-10  Score=117.08  Aligned_cols=105  Identities=23%  Similarity=0.258  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~  204 (384)
                      ..+++.+++++...++++|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++..+  ++++++++|+.+......
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~  362 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP  362 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence            345556666777778899999999999999999999889999999999999999987643  479999999976421100


Q ss_pred             hhhHHhhhccCCCcceEeeccCccccHHHHHHhcc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~  239 (384)
                              ...+.||+|+.|+||.-..+.+.++..
T Consensus       363 --------~~~~~fD~Vi~dPPr~g~~~~~~~l~~  389 (443)
T PRK13168        363 --------WALGGFDKVLLDPPRAGAAEVMQALAK  389 (443)
T ss_pred             --------hhcCCCCEEEECcCCcChHHHHHHHHh
Confidence                    012468999999999877777777764

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.16  E-value=8.7e-11  Score=110.78  Aligned_cols=97  Identities=25%  Similarity=0.301  Sum_probs=76.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ....+++.+...++.+|||||||+|.++..+++.  +.+|+|+|+++.|++.++++     +++++++|+.++..     
T Consensus        17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~-----   86 (255)
T PRK14103         17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWKP-----   86 (255)
T ss_pred             HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCCC-----
Confidence            3456778888778899999999999999999988  67999999999999999763     68899999987632     


Q ss_pred             hHHhhhccCCCcceEeeccCccccH-------HHHHHhcccCCC
Q 016715          207 SLFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDI  243 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~~-------~il~~L~~~g~~  243 (384)
                              .+.||.|++|..++..+       .+...|+++|.+
T Consensus        87 --------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l  122 (255)
T PRK14103         87 --------KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWI  122 (255)
T ss_pred             --------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEE
Confidence                    15799999998775543       334456666654

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.15  E-value=6.6e-11  Score=106.02  Aligned_cols=102  Identities=19%  Similarity=0.269  Sum_probs=83.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      ...++..+.+....+|.|+|||+|..|..|+++  ++.++|+|.|++|++.|++++   +++++..+|+.++..+     
T Consensus        19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~p~-----   90 (257)
T COG4106          19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWKPE-----   90 (257)
T ss_pred             HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcCCC-----
Confidence            446777777778889999999999999999998  789999999999999998876   6899999999987543     


Q ss_pred             HHhhhccCCCcceEeeccCccccH-------HHHHHhcccCCCeeEE
Q 016715          208 LFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDIFSEV  247 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~i~~-------~il~~L~~~g~~~~~~  247 (384)
                              ...|++++|-.+++.+       .++.+|.++|.+-..|
T Consensus        91 --------~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm  129 (257)
T COG4106          91 --------QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM  129 (257)
T ss_pred             --------CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence                    4789999998887765       3455666666554443

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.14  E-value=2e-10  Score=111.70  Aligned_cols=107  Identities=14%  Similarity=0.115  Sum_probs=82.1

Q ss_pred             ccCCHHHHHHHH----HHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccc
Q 016715          123 YMLNSEINDQLA----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF  196 (384)
Q Consensus       123 fl~~~~~~~~il----~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~  196 (384)
                      |..++.+.+.++    +++...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...+  ++++++++|+
T Consensus       151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~  230 (315)
T PRK03522        151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS  230 (315)
T ss_pred             eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence            346666665555    4454445689999999999999999999999999999999999999987643  4799999999


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCccc-cHHHHHHhccc
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPM  240 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i-~~~il~~L~~~  240 (384)
                      .++...           ..+.+|.|+.|+|+.- ...++..|...
T Consensus       231 ~~~~~~-----------~~~~~D~Vv~dPPr~G~~~~~~~~l~~~  264 (315)
T PRK03522        231 TQFATA-----------QGEVPDLVLVNPPRRGIGKELCDYLSQM  264 (315)
T ss_pred             HHHHHh-----------cCCCCeEEEECCCCCCccHHHHHHHHHc
Confidence            875421           1146899999999864 45555665543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.13  E-value=9.4e-10  Score=98.83  Aligned_cols=109  Identities=16%  Similarity=0.210  Sum_probs=82.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~  198 (384)
                      -++.+.+.+.+++.+.+.++.+|||||||+|.++..+++.+  .+|+++|+++.+++.++++....  ++++++.+|+..
T Consensus        13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~   92 (187)
T PRK08287         13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI   92 (187)
T ss_pred             CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence            35677888888899988888999999999999999999873  58999999999999999887533  478999998742


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccccHH----HHHHhcccCCCee
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD----VIKQLLPMGDIFS  245 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~----il~~L~~~g~~~~  245 (384)
                       .+             .+.+|.|+++.......+    ....|.++|.++.
T Consensus        93 -~~-------------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~  129 (187)
T PRK08287         93 -EL-------------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVL  129 (187)
T ss_pred             -hc-------------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEE
Confidence             11             146899988754332233    3445666665543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.13  E-value=2.3e-10  Score=99.22  Aligned_cols=80  Identities=20%  Similarity=0.395  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCcchHHHHHHHH-c--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLN-A--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~-~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      +++.+|||+|||+|.++..+++ .  +.+++|+|+++.|++.|++++..  .++++++++|+.+++-.  +        .
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~--------~   71 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--L--------E   71 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--S--------S
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--c--------C
Confidence            3578999999999999999994 3  56999999999999999997653  34899999999996511  0        1


Q ss_pred             CCCcceEeeccCcccc
Q 016715          215 SSGFAKVVANIPFNIS  230 (384)
Q Consensus       215 ~~~~d~Vv~NlPy~i~  230 (384)
                       ..||+|+++.+++..
T Consensus        72 -~~~D~I~~~~~l~~~   86 (152)
T PF13847_consen   72 -EKFDIIISNGVLHHF   86 (152)
T ss_dssp             -TTEEEEEEESTGGGT
T ss_pred             -CCeeEEEEcCchhhc
Confidence             479999998776443

...

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.13  E-value=8.2e-10  Score=91.49  Aligned_cols=107  Identities=20%  Similarity=0.293  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccch
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~  201 (384)
                      ...+...+++.+.+.++++|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++...  ++++++.+|+.....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   83 (124)
T TIGR02469         4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE   83 (124)
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence            4566777888888878889999999999999999987  458999999999999999887543  478999999875321


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCccccH----HHHHHhcccCCC
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFNIST----DVIKQLLPMGDI  243 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~----~il~~L~~~g~~  243 (384)
                      .           ..+.+|.|+...+.....    .+.+.|+++|.+
T Consensus        84 ~-----------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l  118 (124)
T TIGR02469        84 D-----------SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRI  118 (124)
T ss_pred             h-----------hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEE
Confidence            1           125789998865443322    333445555543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.12  E-value=2.3e-10  Score=89.88  Aligned_cols=72  Identities=26%  Similarity=0.393  Sum_probs=59.9

Q ss_pred             EEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715          146 LEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       146 LEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                      ||+|||+|..+..+++. +.+|+++|+++.+++.++++... .++.++++|+.++++++            +.||.|+++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~~------------~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLPFPD------------NSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-T------------T-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCcccc------------ccccccccc
Confidence            89999999999999999 88999999999999999998754 46779999999998865            789999998


Q ss_pred             cCcccc
Q 016715          225 IPFNIS  230 (384)
Q Consensus       225 lPy~i~  230 (384)
                      --++..
T Consensus        68 ~~~~~~   73 (95)
T PF08241_consen   68 SVLHHL   73 (95)
T ss_dssp             SHGGGS
T ss_pred             cceeec
Confidence            666544

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.12  E-value=3e-10  Score=102.13  Aligned_cols=90  Identities=20%  Similarity=0.249  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ++.+|||||||+|..+..++..  +++|+++|+++.+++.++++.+..  ++++++++|+.+++. +            +
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~------------~  111 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-E------------E  111 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-C------------C
Confidence            4789999999999999999874  579999999999999999987643  369999999988654 2            5


Q ss_pred             CcceEeeccCc---cccHHHHHHhcccCCC
Q 016715          217 GFAKVVANIPF---NISTDVIKQLLPMGDI  243 (384)
Q Consensus       217 ~~d~Vv~NlPy---~i~~~il~~L~~~g~~  243 (384)
                      .||.|++|.-.   .+...+...|.++|.+
T Consensus       112 ~fDlV~~~~~~~~~~~l~~~~~~LkpGG~l  141 (187)
T PRK00107        112 KFDVVTSRAVASLSDLVELCLPLLKPGGRF  141 (187)
T ss_pred             CccEEEEccccCHHHHHHHHHHhcCCCeEE
Confidence            79999987411   2223444566666654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.11  E-value=1.6e-10  Score=110.76  Aligned_cols=128  Identities=27%  Similarity=0.290  Sum_probs=84.9

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---Ce
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QL  189 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v  189 (384)
                      .|...||....-..++.-.+++.+ ..++++|||+|||||.|+...++.|+ +|+|+|+|+.+++.+++|...++   ++
T Consensus       135 dPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~  213 (295)
T PF06325_consen  135 DPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRI  213 (295)
T ss_dssp             STTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCE
T ss_pred             CCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeE
Confidence            556677765554445555555555 34678999999999999999999988 79999999999999999987543   44


Q ss_pred             EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccH----HHHHHhcccCCCeeEEEEEeeHHHHHH
Q 016715          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST----DVIKQLLPMGDIFSEVVLLLQEETALR  258 (384)
Q Consensus       190 ~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~----~il~~L~~~g~~~~~~~~~~qke~a~r  258 (384)
                      .+.  ...+.              ....||+|++|+-..+..    ++...+.++|.++...++.-|.+....
T Consensus       214 ~v~--~~~~~--------------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~  270 (295)
T PF06325_consen  214 EVS--LSEDL--------------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIE  270 (295)
T ss_dssp             EES--CTSCT--------------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHH
T ss_pred             EEE--Eeccc--------------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHH
Confidence            332  11111              126899999998664443    334455667777666666555544333

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.10  E-value=4.1e-10  Score=106.16  Aligned_cols=86  Identities=19%  Similarity=0.330  Sum_probs=71.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ..+.++..+.+.++++|||||||+|.++..+++.  +.+|+|+|+++.|++.++++.   +++.++.+|+.++..     
T Consensus        19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~~-----   90 (258)
T PRK01683         19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQP-----   90 (258)
T ss_pred             HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccCC-----
Confidence            4567777777778899999999999999999987  569999999999999999875   478899999876542     


Q ss_pred             hHHhhhccCCCcceEeeccCcccc
Q 016715          207 SLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                              .+.+|+|++|..+++.
T Consensus        91 --------~~~fD~v~~~~~l~~~  106 (258)
T PRK01683         91 --------PQALDLIFANASLQWL  106 (258)
T ss_pred             --------CCCccEEEEccChhhC
Confidence                    1479999999877544

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.09  E-value=4.2e-10  Score=106.25  Aligned_cols=82  Identities=22%  Similarity=0.362  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (384)
                      .-.+.+++.+.+++|++|||||||.|.+...+|+. +.+|+|+++|+++.+.+++++...   .+++++..|..++.   
T Consensus        59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---  135 (283)
T COG2230          59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---  135 (283)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence            34667888999999999999999999999999998 899999999999999999977532   38999999988864   


Q ss_pred             hhhhHHhhhccCCCcceEeec
Q 016715          204 HMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                                  +.||.|||-
T Consensus       136 ------------e~fDrIvSv  144 (283)
T COG2230         136 ------------EPFDRIVSV  144 (283)
T ss_pred             ------------cccceeeeh
Confidence                        459999873

>PRK14968 putative methyltransferase; Provisional

Probab=99.09  E-value=1.3e-09  Score=97.31  Aligned_cols=87  Identities=24%  Similarity=0.363  Sum_probs=69.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--C--eEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--~--v~~~~gD~~~~~~~~~~  205 (384)
                      ...+++.+...++++|||+|||+|.++..++..+.+|+++|+++.+++.+++++...+  +  +.++++|+.+.. .   
T Consensus        12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~---   87 (188)
T PRK14968         12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-R---   87 (188)
T ss_pred             HHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-c---
Confidence            3445555555678899999999999999999999999999999999999988875322  2  889999986632 1   


Q ss_pred             hhHHhhhccCCCcceEeeccCccc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                               ...+|.|++|+||..
T Consensus        88 ---------~~~~d~vi~n~p~~~  102 (188)
T PRK14968         88 ---------GDKFDVILFNPPYLP  102 (188)
T ss_pred             ---------ccCceEEEECCCcCC
Confidence                     137999999999865

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.09  E-value=2.9e-10  Score=104.10  Aligned_cols=109  Identities=20%  Similarity=0.216  Sum_probs=78.3

Q ss_pred             HHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHH
Q 016715          104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR  180 (384)
Q Consensus       104 ~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~  180 (384)
                      ....+...+..+...|.+-...++--...|-+.+..   .+|.+|||||||-|.++..||+.|++|+|+|+++.+++.|+
T Consensus        19 ~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak   98 (243)
T COG2227          19 KFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK   98 (243)
T ss_pred             HHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH
Confidence            344455555555555655444555444455554443   47889999999999999999999999999999999999999


Q ss_pred             HHhcCCC-CeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715          181 ERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       181 ~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                      ......+ ++.+.+..++++..            .++.||+|++.
T Consensus        99 ~ha~e~gv~i~y~~~~~edl~~------------~~~~FDvV~cm  131 (243)
T COG2227          99 LHALESGVNIDYRQATVEDLAS------------AGGQFDVVTCM  131 (243)
T ss_pred             HhhhhccccccchhhhHHHHHh------------cCCCccEEEEh
Confidence            8875433 45566666666543            23689999986

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.08  E-value=6.9e-10  Score=108.91  Aligned_cols=85  Identities=19%  Similarity=0.268  Sum_probs=68.0

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~  207 (384)
                      +.+++.+......+|||+|||+|.++..+++++  .+|+++|+|+.+++.+++++..++ ..+++.+|+....       
T Consensus       186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~-------  258 (342)
T PRK09489        186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDI-------  258 (342)
T ss_pred             HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccccc-------
Confidence            556676665555689999999999999999874  489999999999999999887543 4567778875421       


Q ss_pred             HHhhhccCCCcceEeeccCccc
Q 016715          208 LFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                             .+.||.||+|+||+.
T Consensus       259 -------~~~fDlIvsNPPFH~  273 (342)
T PRK09489        259 -------KGRFDMIISNPPFHD  273 (342)
T ss_pred             -------CCCccEEEECCCccC
Confidence                   257999999999974

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.08  E-value=6.1e-10  Score=99.72  Aligned_cols=72  Identities=19%  Similarity=0.319  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ++++|||||||+|.++..++..  +.+|+|+|.++.+++.++++.+..  ++++++++|+.++..             .+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-------------~~  108 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-------------EE  108 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-------------cC
Confidence            4789999999999999998876  358999999999999998876543  479999999988632             15


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      .||.|++|.
T Consensus       109 ~fD~I~s~~  117 (181)
T TIGR00138       109 QFDVITSRA  117 (181)
T ss_pred             CccEEEehh
Confidence            799999985

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=5e-10  Score=106.08  Aligned_cols=90  Identities=22%  Similarity=0.324  Sum_probs=72.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~  205 (384)
                      .+-+++.+....+.+|||+|||.|.++..+++..  .+++.+|+|..+++.+++++..+.  +..+...|..+--     
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----  221 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----  221 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----
Confidence            4567888887767799999999999999999985  499999999999999999987542  4467777765531     


Q ss_pred             hhHHhhhccCCCcceEeeccCccccHHH
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNISTDV  233 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i~~~i  233 (384)
                               .+.||.||+|+||+-..++
T Consensus       222 ---------~~kfd~IisNPPfh~G~~v  240 (300)
T COG2813         222 ---------EGKFDLIISNPPFHAGKAV  240 (300)
T ss_pred             ---------cccccEEEeCCCccCCcch
Confidence                     2479999999999765433

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.08  E-value=8e-10  Score=105.16  Aligned_cols=110  Identities=24%  Similarity=0.345  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      .+.++.+++.+++++|++|||||||.|.++..++++ |++|+||.+|+...+.+++++...   +++++..+|..+++  
T Consensus        48 ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--  125 (273)
T PF02353_consen   48 ERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--  125 (273)
T ss_dssp             HHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence            345677888889999999999999999999999998 999999999999999999988753   37999999987754  


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCc-cc--------cHHHHHHhcccCCCeeEEEEEe
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPF-NI--------STDVIKQLLPMGDIFSEVVLLL  251 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy-~i--------~~~il~~L~~~g~~~~~~~~~~  251 (384)
                                   ..||.||+--.+ ++        ...+-..|+++|.++...+...
T Consensus       126 -------------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~  170 (273)
T PF02353_consen  126 -------------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR  170 (273)
T ss_dssp             --------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred             -------------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence                         478999874222 21        2234456667776655544443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=4.7e-10  Score=107.15  Aligned_cols=74  Identities=24%  Similarity=0.433  Sum_probs=60.4

Q ss_pred             EEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      +|||+|||||.++..++....  +|+|+|+|+.+++.|++|...+  .++.++++|..+--              .+.||
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~--------------~~~fD  178 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL--------------RGKFD  178 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc--------------CCcee
Confidence            799999999999999999854  9999999999999999998754  35666666655421              24899


Q ss_pred             eEeeccCccccH
Q 016715          220 KVVANIPFNIST  231 (384)
Q Consensus       220 ~Vv~NlPy~i~~  231 (384)
                      +||+|+||--.+
T Consensus       179 lIVsNPPYip~~  190 (280)
T COG2890         179 LIVSNPPYIPAE  190 (280)
T ss_pred             EEEeCCCCCCCc
Confidence            999999994443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.08  E-value=5.2e-10  Score=105.51  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~  206 (384)
                      .+.+++.+. ..+.+|||||||+|.++..+++.+.+|+++|+++.|++.|+++....   ++++++++|+.++...    
T Consensus        34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~----  108 (255)
T PRK11036         34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH----  108 (255)
T ss_pred             HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh----
Confidence            345666665 45679999999999999999999999999999999999999987643   4789999999886421    


Q ss_pred             hHHhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCC
Q 016715          207 SLFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI  243 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~  243 (384)
                             ..+.||+|+++..++..       ..+...|+++|.+
T Consensus       109 -------~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l  145 (255)
T PRK11036        109 -------LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGAL  145 (255)
T ss_pred             -------cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEE
Confidence                   12579999987654322       2334455555544

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.06  E-value=8.2e-10  Score=105.86  Aligned_cols=80  Identities=16%  Similarity=0.261  Sum_probs=64.9

Q ss_pred             hcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhh
Q 016715          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      +...++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|++++..+   ++++++++|+.+.. +         
T Consensus       117 ~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-~---------  186 (284)
T TIGR03533       117 LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-P---------  186 (284)
T ss_pred             hccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-C---------
Confidence            33344579999999999999999987  469999999999999999988643   36999999986521 1         


Q ss_pred             hccCCCcceEeeccCccc
Q 016715          212 RKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i  229 (384)
                         ...||.|++|+||.-
T Consensus       187 ---~~~fD~Iv~NPPy~~  201 (284)
T TIGR03533       187 ---GRKYDLIVSNPPYVD  201 (284)
T ss_pred             ---CCCccEEEECCCCCC
Confidence               146999999999953

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.06  E-value=9.1e-10  Score=107.06  Aligned_cols=93  Identities=22%  Similarity=0.239  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++.+|||||||+|.++..+++.|++|+|||.++.+++.|+.+....   .+++++++|+.++++.+            +
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~------------~  197 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG------------R  197 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc------------C
Confidence            35679999999999999999998999999999999999999876432   37999999998876532            5


Q ss_pred             CcceEeeccCcc-c------cHHHHHHhcccCCCe
Q 016715          217 GFAKVVANIPFN-I------STDVIKQLLPMGDIF  244 (384)
Q Consensus       217 ~~d~Vv~NlPy~-i------~~~il~~L~~~g~~~  244 (384)
                      .||+|++.-.++ +      ...+...|+++|.++
T Consensus       198 ~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~li  232 (322)
T PLN02396        198 KFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATV  232 (322)
T ss_pred             CCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEE
Confidence            799998754332 2      234445666666554

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.06  E-value=1.1e-09  Score=104.46  Aligned_cols=90  Identities=13%  Similarity=0.247  Sum_probs=73.0

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcC-----CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~-----~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      ..+.+|||||||+|.++..+++..     ..|+|+|+++.+++.|+++.   +++.++.+|+.++++.+           
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp~~~-----------  149 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLPFAD-----------  149 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCCCcC-----------
Confidence            355789999999999999998752     37999999999999998764   57899999999988654           


Q ss_pred             CCCcceEeeccCccccHHHHHHhcccCCCe
Q 016715          215 SSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       215 ~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~  244 (384)
                       +.||+|+++..-....++.+.|+++|.++
T Consensus       150 -~sfD~I~~~~~~~~~~e~~rvLkpgG~li  178 (272)
T PRK11088        150 -QSLDAIIRIYAPCKAEELARVVKPGGIVI  178 (272)
T ss_pred             -CceeEEEEecCCCCHHHHHhhccCCCEEE
Confidence             67999998764455567778888877654

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.06  E-value=1e-09  Score=103.31  Aligned_cols=92  Identities=22%  Similarity=0.229  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh
Q 016715          128 EINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       128 ~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~  204 (384)
                      .+++.+++.+.. ..+.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.+++++..+ +++++++|+.+..... 
T Consensus        72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~-  149 (251)
T TIGR03704        72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTA-  149 (251)
T ss_pred             HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchh-
Confidence            444555554432 23458999999999999999876  458999999999999999998654 3688999987632110 


Q ss_pred             hhhHHhhhccCCCcceEeeccCcccc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                               ..+.||+||+|+||.-.
T Consensus       150 ---------~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704       150 ---------LRGRVDILAANAPYVPT  166 (251)
T ss_pred             ---------cCCCEeEEEECCCCCCc
Confidence                     12469999999999643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=2.8e-10  Score=95.81  Aligned_cols=103  Identities=22%  Similarity=0.343  Sum_probs=86.1

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhc----CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-  187 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~----~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-  187 (384)
                      +|+-.+.| |.+.|.++..|+..+.    .-+|+.++|+|||+|.+....+-.+. .|+|+|+|++.++++..+..... 
T Consensus        18 Kpk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv   96 (185)
T KOG3420|consen   18 KPKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV   96 (185)
T ss_pred             ccchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh
Confidence            67777788 9999999999988774    23688999999999999977776655 79999999999999999876543 


Q ss_pred             CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ++.++++|+++..+.            .+.||.++-|+||..
T Consensus        97 qidlLqcdildle~~------------~g~fDtaviNppFGT  126 (185)
T KOG3420|consen   97 QIDLLQCDILDLELK------------GGIFDTAVINPPFGT  126 (185)
T ss_pred             hhheeeeeccchhcc------------CCeEeeEEecCCCCc
Confidence            778999999987654            278999999999943

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.05  E-value=8.7e-10  Score=97.95  Aligned_cols=112  Identities=24%  Similarity=0.381  Sum_probs=87.7

Q ss_pred             CChHHHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcC--CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHH
Q 016715           99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHM  175 (384)
Q Consensus        99 ~~~~~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~--~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~  175 (384)
                      ....+.++.....+.+|         +..++.+.+++++..  -.|.++||+.+|+|.++.+.+++|+ .++.||.|...
T Consensus         8 ~~kgr~L~~p~~~~~RP---------T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a   78 (187)
T COG0742           8 KYKGRKLKTPDGPGTRP---------TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKA   78 (187)
T ss_pred             cccCCcccCCCCCCcCC---------CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHH
Confidence            33344444444445566         677899999999986  5889999999999999999999977 89999999999


Q ss_pred             HHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          176 VGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       176 ~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      +..++++++..   ++.+++.+|+.......         ...+.||+|+.++||+
T Consensus        79 ~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~---------~~~~~FDlVflDPPy~  125 (187)
T COG0742          79 VKILKENLKALGLEGEARVLRNDALRALKQL---------GTREPFDLVFLDPPYA  125 (187)
T ss_pred             HHHHHHHHHHhCCccceEEEeecHHHHHHhc---------CCCCcccEEEeCCCCc
Confidence            99999998642   58999999998432111         0123599999999997

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.05  E-value=1.6e-09  Score=97.63  Aligned_cols=109  Identities=17%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             ccCCHHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      .-++..+.+.+++.+.. ..+.+|||++||+|.++.+++.+|+ +|++||.|+.+++.++++++.+   ++++++++|+.
T Consensus        30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~  109 (189)
T TIGR00095        30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL  109 (189)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence            34677777778887742 3578999999999999999999987 8999999999999999987643   36899999996


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCccc--cHHHHHHhcc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLP  239 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L~~  239 (384)
                      +....     +.   .....+|+|+.++||..  ..+++..+..
T Consensus       110 ~~l~~-----~~---~~~~~~dvv~~DPPy~~~~~~~~l~~l~~  145 (189)
T TIGR00095       110 RALKF-----LA---KKPTFDNVIYLDPPFFNGALQALLELCEN  145 (189)
T ss_pred             HHHHH-----hh---ccCCCceEEEECcCCCCCcHHHHHHHHHH
Confidence            64211     00   01124799999999943  3455554444

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.04  E-value=8.3e-10  Score=88.96  Aligned_cols=81  Identities=23%  Similarity=0.431  Sum_probs=61.9

Q ss_pred             EEEEcCcchHHHHHHHHcC-----CcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          145 VLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       145 VLEIG~G~G~lt~~La~~~-----~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      |||+|||+|..+..+++..     .+++++|+|+.|++.++++.... .+++++++|+.+++..+            +.+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~------------~~~   68 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSD------------GKF   68 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHS------------SSE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccC------------CCe
Confidence            7999999999999999874     79999999999999999987532 38999999999976543            689


Q ss_pred             ceEee-cc-CccccHHHHHHh
Q 016715          219 AKVVA-NI-PFNISTDVIKQL  237 (384)
Q Consensus       219 d~Vv~-Nl-Py~i~~~il~~L  237 (384)
                      |+|++ +. ..+...+-+..+
T Consensus        69 D~v~~~~~~~~~~~~~~~~~l   89 (101)
T PF13649_consen   69 DLVVCSGLSLHHLSPEELEAL   89 (101)
T ss_dssp             EEEEE-TTGGGGSSHHHHHHH
T ss_pred             eEEEEcCCccCCCCHHHHHHH
Confidence            99998 33 224555444443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.03  E-value=1.3e-09  Score=111.81  Aligned_cols=113  Identities=18%  Similarity=0.278  Sum_probs=86.2

Q ss_pred             CCCcccCCHHH--HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEc
Q 016715          119 LGQHYMLNSEI--NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVLQE  194 (384)
Q Consensus       119 ~gq~fl~~~~~--~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~g  194 (384)
                      ||..|..++.+  .+.+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+++.+++.|+++.... .+++++++
T Consensus       242 ~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~  321 (475)
T PLN02336        242 FGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVA  321 (475)
T ss_pred             hCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence            56666666554  567888888778889999999999999999886 779999999999999999876533 47999999


Q ss_pred             cccccchhhhhhhHHhhhccCCCcceEeeccCcc-c------cHHHHHHhcccCCC
Q 016715          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN-I------STDVIKQLLPMGDI  243 (384)
Q Consensus       195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~-i------~~~il~~L~~~g~~  243 (384)
                      |+.+.++++            +.||+|+++-.+. +      ...+.+.|+++|.+
T Consensus       322 d~~~~~~~~------------~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l  365 (475)
T PLN02336        322 DCTKKTYPD------------NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKV  365 (475)
T ss_pred             CcccCCCCC------------CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEE
Confidence            998876543            5799999864432 2      23444566666654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.03  E-value=1.4e-09  Score=101.82  Aligned_cols=91  Identities=22%  Similarity=0.363  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~  202 (384)
                      ..+++.+++.+.. .+.+|||+|||+|.++..+++.  +.+++|+|+++.+++.++.+....  ++++++++|+.+. +.
T Consensus        74 ~~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~  151 (251)
T TIGR03534        74 EELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-LP  151 (251)
T ss_pred             HHHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-Cc
Confidence            4455666666543 3468999999999999999987  569999999999999999887643  3799999998763 21


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCccccH
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                                  .+.||+|++|+||....
T Consensus       152 ------------~~~fD~Vi~npPy~~~~  168 (251)
T TIGR03534       152 ------------GGKFDLIVSNPPYIPEA  168 (251)
T ss_pred             ------------CCceeEEEECCCCCchh
Confidence                        25799999999997544

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.03  E-value=2.2e-09  Score=102.05  Aligned_cols=90  Identities=22%  Similarity=0.318  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhc-C-CCCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA-S-IDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~-~-~~~v~~~~gD~~~~~~~  202 (384)
                      +.+++.+++.....++.+|||+|||+|.++..++...  .+|+++|+++.+++.+++++. . ..+++++++|+.+... 
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-  172 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-  172 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC-
Confidence            4455566655555677899999999999999999874  699999999999999999876 2 2479999999865321 


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCccc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                                  .+.||+|++|+||.-
T Consensus       173 ------------~~~fD~Iv~npPy~~  187 (275)
T PRK09328        173 ------------GGRFDLIVSNPPYIP  187 (275)
T ss_pred             ------------CCceeEEEECCCcCC
Confidence                        157999999999954

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.03  E-value=1.6e-09  Score=97.03  Aligned_cols=121  Identities=18%  Similarity=0.383  Sum_probs=87.1

Q ss_pred             CCHHHHHHHHHHhcCC--CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~--~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      +..++.+.+++.+...  ++.+|||+.||+|.++.+.+++|+ +|+.||.|+..+..++++++..   ++++++.+|+..
T Consensus        24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~  103 (183)
T PF03602_consen   24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK  103 (183)
T ss_dssp             SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred             CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence            6778899999999864  788999999999999999999987 8999999999999999998743   268999999776


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCcccc---HHHHHHhcccCCCeeEEEEEeeH
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS---TDVIKQLLPMGDIFSEVVLLLQE  253 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~---~~il~~L~~~g~~~~~~~~~~qk  253 (384)
                      .-...     .   .....||+|+.+|||...   .+++..+...+.+-....++++.
T Consensus       104 ~l~~~-----~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  104 FLLKL-----A---KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             HHHHH-----H---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             HHHhh-----c---ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            43211     0   124689999999999765   44667776554444445555554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.03  E-value=1.3e-09  Score=104.51  Aligned_cols=92  Identities=17%  Similarity=0.295  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          127 SEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       127 ~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      ..+++.+++.+... ++.+|||+|||+|.++..++..  +.+|+|+|+++.+++.++++....   ++++++++|+.+. 
T Consensus        99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-  177 (284)
T TIGR00536        99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-  177 (284)
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-
Confidence            34455555544322 2369999999999999999987  359999999999999999987643   2599999998763 


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccccH
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                      +.            ...||+|++|+||.-..
T Consensus       178 ~~------------~~~fDlIvsNPPyi~~~  196 (284)
T TIGR00536       178 LA------------GQKIDIIVSNPPYIDEE  196 (284)
T ss_pred             Cc------------CCCccEEEECCCCCCcc
Confidence            11            13799999999995543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.02  E-value=1.3e-09  Score=108.52  Aligned_cols=106  Identities=18%  Similarity=0.169  Sum_probs=82.2

Q ss_pred             ccCCHHHHHHHHHHh----cCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccc
Q 016715          123 YMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF  196 (384)
Q Consensus       123 fl~~~~~~~~il~~l----~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~  196 (384)
                      |.++..+.+.+++.+    ...++.+|||+|||+|.++..++..+.+|+|||+|+.+++.++++...+  ++++++.+|+
T Consensus       211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~  290 (374)
T TIGR02085       211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS  290 (374)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence            457777777776543    3345679999999999999999998889999999999999999988643  3899999999


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCcc-ccHHHHHHhcc
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLP  239 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~-i~~~il~~L~~  239 (384)
                      .+....           ....+|+||.|+|+. ....++..+..
T Consensus       291 ~~~~~~-----------~~~~~D~vi~DPPr~G~~~~~l~~l~~  323 (374)
T TIGR02085       291 AKFATA-----------QMSAPELVLVNPPRRGIGKELCDYLSQ  323 (374)
T ss_pred             HHHHHh-----------cCCCCCEEEECCCCCCCcHHHHHHHHh
Confidence            765321           113589999999996 34556565544

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.02  E-value=2.4e-09  Score=97.15  Aligned_cols=110  Identities=20%  Similarity=0.290  Sum_probs=82.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      ++.+++....+..+.+.++++|||+|||+|.++..++..   +.+|+++|+++.+++.+++++...   +++.++.+|+.
T Consensus        23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~  102 (198)
T PRK00377         23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP  102 (198)
T ss_pred             CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence            456777777788889899999999999999999998875   358999999999999999887543   47899999987


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCccc----cHHHHHHhcccCCCe
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI----STDVIKQLLPMGDIF  244 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i----~~~il~~L~~~g~~~  244 (384)
                      +....           ..+.+|.|+.+.....    ...+...|.++|.++
T Consensus       103 ~~l~~-----------~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv  142 (198)
T PRK00377        103 EILFT-----------INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIV  142 (198)
T ss_pred             hhHhh-----------cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEE
Confidence            64211           1257899998654322    233344566666554

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.02  E-value=1.9e-09  Score=99.19  Aligned_cols=82  Identities=27%  Similarity=0.347  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhc--CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       128 ~~~~~il~~l~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      .+.+.+++++.  ..++.+|||||||+|.++..++..+.+|+|+|+++.++..|++++...   .++.+.++|+.+.+  
T Consensus        40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--  117 (219)
T TIGR02021        40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--  117 (219)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence            45667777776  457889999999999999999999889999999999999999987532   37899999988754  


Q ss_pred             hhhhhHHhhhccCCCcceEeec
Q 016715          203 SHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                                   +.||.|++.
T Consensus       118 -------------~~fD~ii~~  126 (219)
T TIGR02021       118 -------------GEFDIVVCM  126 (219)
T ss_pred             -------------CCcCEEEEh
Confidence                         468999874

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.01  E-value=2.6e-09  Score=96.67  Aligned_cols=112  Identities=21%  Similarity=0.332  Sum_probs=80.5

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC  199 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~  199 (384)
                      ++.+.+...+++.+.+.++++|||+|||+|.++..++..  +.+|+++|+|+.+++.+++++...  ++++++.+|+.+.
T Consensus        23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~  102 (196)
T PRK07402         23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC  102 (196)
T ss_pred             CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence            566777778899998888999999999999999999865  469999999999999999987543  4799999998652


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccC--c-cccHHHHHHhcccCCCeeE
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIP--F-NISTDVIKQLLPMGDIFSE  246 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlP--y-~i~~~il~~L~~~g~~~~~  246 (384)
                      . ..          ....+|.++.+..  + .+...+...|.++|.++..
T Consensus       103 ~-~~----------~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~  141 (196)
T PRK07402        103 L-AQ----------LAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVAT  141 (196)
T ss_pred             H-hh----------CCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEE
Confidence            1 11          0123455544322  1 2334455567777665443

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.00  E-value=2e-09  Score=101.05  Aligned_cols=76  Identities=21%  Similarity=0.344  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      .++.+|||||||+|.++..+++.    +.+|+|+|+++.|++.+++++...   .+++++++|+.++++           
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----------  123 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----------  123 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----------
Confidence            46789999999999999988872    569999999999999999988642   379999999988754           


Q ss_pred             ccCCCcceEeeccCccc
Q 016715          213 KSSSGFAKVVANIPFNI  229 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~i  229 (384)
                         +.+|.|++|..++.
T Consensus       124 ---~~~D~vv~~~~l~~  137 (247)
T PRK15451        124 ---ENASMVVLNFTLQF  137 (247)
T ss_pred             ---CCCCEEehhhHHHh
Confidence               34788998876543

>PRK05785 hypothetical protein; Provisional

Probab=99.00  E-value=9.2e-10  Score=102.06  Aligned_cols=71  Identities=17%  Similarity=0.263  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      ++.+|||||||||.++..+++. +.+|+|+|++++|++.++++.      ..+++|+.++++++            +.||
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp~~d------------~sfD  112 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALPFRD------------KSFD  112 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCCCCC------------CCEE
Confidence            4679999999999999999988 679999999999999998642      35789999988764            6899


Q ss_pred             eEeeccCccc
Q 016715          220 KVVANIPFNI  229 (384)
Q Consensus       220 ~Vv~NlPy~i  229 (384)
                      .|+++...+.
T Consensus       113 ~v~~~~~l~~  122 (226)
T PRK05785        113 VVMSSFALHA  122 (226)
T ss_pred             EEEecChhhc
Confidence            9999765443

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.99  E-value=3.4e-09  Score=101.79  Aligned_cols=117  Identities=20%  Similarity=0.194  Sum_probs=79.2

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---Ce
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QL  189 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v  189 (384)
                      .|...||........+...+++... .++++|||+|||+|.++..+++.|+ +|+|+|+|+.+++.++++...++   ++
T Consensus       133 dpg~aFgtG~h~tt~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~  211 (288)
T TIGR00406       133 DPGLAFGTGTHPTTSLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL  211 (288)
T ss_pred             CCCCcccCCCCHHHHHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce
Confidence            4455566544433444444444443 3678999999999999999998875 89999999999999999876432   45


Q ss_pred             EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc----HHHHHHhcccCCCee
Q 016715          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS----TDVIKQLLPMGDIFS  245 (384)
Q Consensus       190 ~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~----~~il~~L~~~g~~~~  245 (384)
                      .+..+|....              ..+.||+|++|+.....    ..+...|+++|.++.
T Consensus       212 ~~~~~~~~~~--------------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~  257 (288)
T TIGR00406       212 QVKLIYLEQP--------------IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLIL  257 (288)
T ss_pred             EEEecccccc--------------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            6666653221              12579999999765432    334456666665543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.99  E-value=3.9e-10  Score=100.33  Aligned_cols=78  Identities=23%  Similarity=0.281  Sum_probs=62.1

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      +.|.+++.  +|.+|||+|||.|.+...|.+. +.+.+|||+|++.+..+.++     .+.++++|+.+.- ..      
T Consensus         5 ~~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL-~~------   70 (193)
T PF07021_consen    5 QIIAEWIE--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGL-AD------   70 (193)
T ss_pred             HHHHHHcC--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhH-hh------
Confidence            34555554  6789999999999999999984 78999999999998888765     7889999998742 11      


Q ss_pred             hhhccCCCcceEeecc
Q 016715          210 ERRKSSSGFAKVVANI  225 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~Nl  225 (384)
                         ...+.||.||.+-
T Consensus        71 ---f~d~sFD~VIlsq   83 (193)
T PF07021_consen   71 ---FPDQSFDYVILSQ   83 (193)
T ss_pred             ---CCCCCccEEehHh
Confidence               1237899999753

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.99  E-value=1.9e-09  Score=98.24  Aligned_cols=77  Identities=22%  Similarity=0.261  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccc-cccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF-VKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~-~~~~~~~~~~~~~~~~~~~  215 (384)
                      ++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.++++....  ++++++++|+ ..++..          ...
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------~~~  109 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------FPD  109 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----------cCc
Confidence            5679999999999999999886  458999999999999999887542  5899999999 554310          012


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      +.+|.|++|.|.
T Consensus       110 ~~~D~V~~~~~~  121 (202)
T PRK00121        110 GSLDRIYLNFPD  121 (202)
T ss_pred             cccceEEEECCC
Confidence            579999998653

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.99  E-value=1.7e-09  Score=96.66  Aligned_cols=96  Identities=22%  Similarity=0.281  Sum_probs=73.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC--c---------EEEEeCCHHHHHHHHHHhcCC---CC
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--T---------VLAIEKDQHMVGLVRERFASI---DQ  188 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~---------V~avE~d~~~~~~a~~~~~~~---~~  188 (384)
                      --.++.++..|+.....++++.|||.-||+|++..+.+..+.  .         ++|.|+|+.+++.+++++...   ..
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            457789999999999999999999999999999988877633  3         779999999999999998743   36


Q ss_pred             eEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       189 v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      +.+.++|+.++++.+            +.+|.||+|+||...
T Consensus        90 i~~~~~D~~~l~~~~------------~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   90 IDFIQWDARELPLPD------------GSVDAIVTNPPYGRR  119 (179)
T ss_dssp             EEEEE--GGGGGGTT------------SBSCEEEEE--STTS
T ss_pred             eEEEecchhhccccc------------CCCCEEEECcchhhh
Confidence            899999999998432            578999999999653

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.99  E-value=2e-09  Score=103.41  Aligned_cols=75  Identities=16%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      .++.+|||+|||+|..+..+++.|.+|+|+|+++.+++.++++....+ ++++..+|+...+++             +.|
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~-------------~~f  185 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQ-------------EEY  185 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccccc-------------CCc
Confidence            345699999999999999999999999999999999999998875433 788888888765432             579


Q ss_pred             ceEeeccCc
Q 016715          219 AKVVANIPF  227 (384)
Q Consensus       219 d~Vv~NlPy  227 (384)
                      |.|+++..+
T Consensus       186 D~I~~~~vl  194 (287)
T PRK12335        186 DFILSTVVL  194 (287)
T ss_pred             cEEEEcchh
Confidence            999998655

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.99  E-value=1.5e-09  Score=100.26  Aligned_cols=113  Identities=25%  Similarity=0.324  Sum_probs=80.4

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--------CeEEEEccccccchhhhhhhHHhhhc
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--------~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      |.+|||+|||+|.++..|++.|+.|+|||+++.|++.|++.....|        ++++.+.|++...             
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-------------  156 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-------------  156 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-------------
Confidence            5789999999999999999999999999999999999999854332        2556666665542             


Q ss_pred             cCCCcceEeeccCc-------cccHHHHHHhcccCCCeeEE---------EEEeeHHHHHHHhcCCCCCCCccc
Q 016715          214 SSSGFAKVVANIPF-------NISTDVIKQLLPMGDIFSEV---------VLLLQEETALRLVEPSLRTSEYRP  271 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy-------~i~~~il~~L~~~g~~~~~~---------~~~~qke~a~rl~~a~pg~~~y~~  271 (384)
                        +.||.|++.--+       .+...+...|+++|++|...         .-++-.|...+++  ++|+..+..
T Consensus       157 --~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~iv--p~Gth~~ek  226 (282)
T KOG1270|consen  157 --GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIV--PKGTHTWEK  226 (282)
T ss_pred             --cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhc--CCCCcCHHH
Confidence              569999985322       33334456778888876432         2334456667754  566655443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.98  E-value=2.7e-09  Score=97.37  Aligned_cols=75  Identities=15%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++.+|||||||+|..+..+++.  +.+++|||+++.+++.|+++.   +++.++++|+.+ ++.+            +.
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~~~~------------~s  105 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-PFKD------------NF  105 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-CCCC------------CC
Confidence            35678999999999999999887  579999999999999999875   467889999887 5433            68


Q ss_pred             cceEeeccCc-ccc
Q 016715          218 FAKVVANIPF-NIS  230 (384)
Q Consensus       218 ~d~Vv~NlPy-~i~  230 (384)
                      ||+|+++-.+ ++.
T Consensus       106 fD~V~~~~vL~hl~  119 (204)
T TIGR03587       106 FDLVLTKGVLIHIN  119 (204)
T ss_pred             EEEEEECChhhhCC
Confidence            9999987554 444

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.97  E-value=2.6e-09  Score=103.44  Aligned_cols=75  Identities=16%  Similarity=0.304  Sum_probs=62.6

Q ss_pred             CEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .+|||+|||+|.++..++..  +.+|+++|+|+.+++.|++++...   ++++++++|+.+.. +            ...
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-~------------~~~  201 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-P------------GRR  201 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-C------------CCC
Confidence            68999999999999999987  469999999999999999998643   36999999986521 1            146


Q ss_pred             cceEeeccCcccc
Q 016715          218 FAKVVANIPFNIS  230 (384)
Q Consensus       218 ~d~Vv~NlPy~i~  230 (384)
                      ||.|++|+||.-.
T Consensus       202 fDlIvsNPPyi~~  214 (307)
T PRK11805        202 YDLIVSNPPYVDA  214 (307)
T ss_pred             ccEEEECCCCCCc
Confidence            9999999999543

>TIGR00452 methyltransferase, putative

Probab=98.97  E-value=7.6e-09  Score=100.21  Aligned_cols=118  Identities=15%  Similarity=0.186  Sum_probs=82.8

Q ss_pred             CCcccCCCcccCCHHHHH-----HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHH---Hhc
Q 016715          114 FPRKSLGQHYMLNSEIND-----QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRE---RFA  184 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~-----~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~---~~~  184 (384)
                      +++-.+.| |.++.+...     .++..+...++++|||||||+|+++..++..|+ .|+|+|.++.|+..++.   ...
T Consensus        90 ~~~~~l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~  168 (314)
T TIGR00452        90 KGPFELSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD  168 (314)
T ss_pred             CCCccccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc
Confidence            45555666 677777654     355566667889999999999999999998876 69999999999876533   222


Q ss_pred             CCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccC-cccc------HHHHHHhcccCCCee
Q 016715          185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIS------TDVIKQLLPMGDIFS  245 (384)
Q Consensus       185 ~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP-y~i~------~~il~~L~~~g~~~~  245 (384)
                      ...++.+..+|+.+++..             ..||.|+++-. |+..      ..+.+.|.++|.++.
T Consensus       169 ~~~~v~~~~~~ie~lp~~-------------~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvl  223 (314)
T TIGR00452       169 NDKRAILEPLGIEQLHEL-------------YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVL  223 (314)
T ss_pred             cCCCeEEEECCHHHCCCC-------------CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEE
Confidence            335788888988887642             47999998743 3332      233445666666543

Known examples to date are restricted to the proteobacteria.

>PRK04266 fibrillarin; Provisional

Probab=98.97  E-value=3.9e-09  Score=97.77  Aligned_cols=100  Identities=13%  Similarity=0.073  Sum_probs=72.8

Q ss_pred             HHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhh
Q 016715          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      +.+.+.++++|||+|||+|.++..+++..  .+|+|+|+++.|++.+.++....+|+.++.+|+.+.....   +     
T Consensus        66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~---~-----  137 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA---H-----  137 (226)
T ss_pred             hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh---h-----
Confidence            35788899999999999999999999873  5899999999999988777655568999999987521100   0     


Q ss_pred             ccCCCcceEeeccCccc-----cHHHHHHhcccCCC
Q 016715          213 KSSSGFAKVVANIPFNI-----STDVIKQLLPMGDI  243 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~i-----~~~il~~L~~~g~~  243 (384)
                       -...+|.|+++.+...     ...+.+.|+++|.+
T Consensus       138 -l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~l  172 (226)
T PRK04266        138 -VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYL  172 (226)
T ss_pred             -ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEE
Confidence             1145899998876422     22333455666654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.96  E-value=2.8e-09  Score=108.12  Aligned_cols=104  Identities=14%  Similarity=0.155  Sum_probs=79.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~  205 (384)
                      .+.+.+.+.+.+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..+  .+++++++|+.+... .. 
T Consensus       279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~-~~-  356 (431)
T TIGR00479       279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLP-KQ-  356 (431)
T ss_pred             HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHH-HH-
Confidence            34455666666677789999999999999999998889999999999999999988643  489999999976421 10 


Q ss_pred             hhHHhhhccCCCcceEeeccCccc-cHHHHHHhcc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLP  239 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i-~~~il~~L~~  239 (384)
                         .   .....+|+|+.|+|+.- ...++..+..
T Consensus       357 ---~---~~~~~~D~vi~dPPr~G~~~~~l~~l~~  385 (431)
T TIGR00479       357 ---P---WAGQIPDVLLLDPPRKGCAAEVLRTIIE  385 (431)
T ss_pred             ---H---hcCCCCCEEEECcCCCCCCHHHHHHHHh
Confidence               0   01246899999999854 5666665543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.95  E-value=2.5e-09  Score=109.78  Aligned_cols=93  Identities=18%  Similarity=0.237  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ......+++.+...++++|||||||+|.++..+++.+.+|+|+|+++.+++.++......+++.++++|+.+..++.   
T Consensus        23 ~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~---   99 (475)
T PLN02336         23 KEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNI---   99 (475)
T ss_pred             chhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCC---
Confidence            34456777777776778999999999999999999988999999999999988765444468999999997432210   


Q ss_pred             hHHhhhccCCCcceEeeccCccc
Q 016715          207 SLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                             ..+.||+|+++.+++.
T Consensus       100 -------~~~~fD~I~~~~~l~~  115 (475)
T PLN02336        100 -------SDGSVDLIFSNWLLMY  115 (475)
T ss_pred             -------CCCCEEEEehhhhHHh
Confidence                   1257999999987754

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.93  E-value=4.1e-09  Score=108.69  Aligned_cols=76  Identities=20%  Similarity=0.367  Sum_probs=62.5

Q ss_pred             CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++...+   ++++++++|+.+..             ...
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-------------~~~  205 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-------------EKQ  205 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-------------cCC
Confidence            468999999999999998875  569999999999999999987643   37899999976521             124


Q ss_pred             CcceEeeccCcccc
Q 016715          217 GFAKVVANIPFNIS  230 (384)
Q Consensus       217 ~~d~Vv~NlPy~i~  230 (384)
                      .||+||+|+||...
T Consensus       206 ~fDlIvsNPPYi~~  219 (506)
T PRK01544        206 KFDFIVSNPPYISH  219 (506)
T ss_pred             CccEEEECCCCCCc
Confidence            79999999999553

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.92  E-value=6.5e-09  Score=101.39  Aligned_cols=101  Identities=21%  Similarity=0.296  Sum_probs=73.5

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHH--hc-CCCCeEEEEccccccchhhhhh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRER--FA-SIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~--~~-~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      +.++..+...++.+|||||||+|+++..++..++ .|+|+|.++.++..++..  .. ...++.++.+|+.++++ +   
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~---  187 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L---  187 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---
Confidence            4556677666789999999999999999999876 699999999998765432  22 23489999999998875 2   


Q ss_pred             hHHhhhccCCCcceEeecc-Ccccc------HHHHHHhcccCCCe
Q 016715          207 SLFERRKSSSGFAKVVANI-PFNIS------TDVIKQLLPMGDIF  244 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~Nl-Py~i~------~~il~~L~~~g~~~  244 (384)
                               +.||.|+++- -|++.      ..+...|.++|.++
T Consensus       188 ---------~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lv  223 (322)
T PRK15068        188 ---------KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELV  223 (322)
T ss_pred             ---------CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEE
Confidence                     5799999853 23332      23344555666554

>PRK08317 hypothetical protein; Provisional

Probab=98.91  E-value=1e-08  Score=94.59  Aligned_cols=104  Identities=23%  Similarity=0.320  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhc-CCCCeEEEEccccccchhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFA-SIDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~  203 (384)
                      .+.+.+++.+.+.++.+|||+|||+|.++..++...   .+++++|+++.+++.++++.. ..+++.++.+|+.+.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~   85 (241)
T PRK08317          6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD   85 (241)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC
Confidence            455677888888889999999999999999999863   589999999999999998743 2358999999998876543


Q ss_pred             hhhhHHhhhccCCCcceEeeccCccc-------cHHHHHHhcccCCC
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNI-------STDVIKQLLPMGDI  243 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i-------~~~il~~L~~~g~~  243 (384)
                                  +.||.|+++..+..       ...+...|+++|.+
T Consensus        86 ------------~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l  120 (241)
T PRK08317         86 ------------GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRV  120 (241)
T ss_pred             ------------CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEE
Confidence                        57999998755422       23444566666654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.91  E-value=3.8e-09  Score=95.60  Aligned_cols=78  Identities=24%  Similarity=0.304  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ...+|||||||+|.++..++..  +.+|+|+|+++.+++.++++...  .+|++++++|+.++....     +    ..+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~-----~----~~~   86 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF-----F----PDG   86 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh-----C----CCC
Confidence            4568999999999999999987  56999999999999999887653  248999999998754210     0    124


Q ss_pred             CcceEeeccCc
Q 016715          217 GFAKVVANIPF  227 (384)
Q Consensus       217 ~~d~Vv~NlPy  227 (384)
                      .+|.|+.|+|-
T Consensus        87 ~~d~v~~~~pd   97 (194)
T TIGR00091        87 SLSKVFLNFPD   97 (194)
T ss_pred             ceeEEEEECCC
Confidence            78999999764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00740 methyltransferase, putative

Probab=98.91  E-value=6.2e-09  Score=97.15  Aligned_cols=75  Identities=20%  Similarity=0.302  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      .++.+|||||||+|.++..+++.    +.+|+|+|+++.|++.|++++...   .+++++++|+.++++           
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  120 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----------  120 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----------
Confidence            46779999999999999999874    568999999999999999987642   378999999998764           


Q ss_pred             ccCCCcceEeeccCcc
Q 016715          213 KSSSGFAKVVANIPFN  228 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~  228 (384)
                         +.+|.|+++..++
T Consensus       121 ---~~~d~v~~~~~l~  133 (239)
T TIGR00740       121 ---KNASMVILNFTLQ  133 (239)
T ss_pred             ---CCCCEEeeecchh
Confidence               2468888876553

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.91  E-value=1.1e-08  Score=101.97  Aligned_cols=84  Identities=23%  Similarity=0.354  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ...+.+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+++.+++.++++.... ++++..+|+.+++      
T Consensus       154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l~------  226 (383)
T PRK11705        154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDLN------  226 (383)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhcC------
Confidence            34556778888889999999999999999999986 789999999999999999987532 5788888876541      


Q ss_pred             hHHhhhccCCCcceEeeccCc
Q 016715          207 SLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                               +.||.|+++..+
T Consensus       227 ---------~~fD~Ivs~~~~  238 (383)
T PRK11705        227 ---------GQFDRIVSVGMF  238 (383)
T ss_pred             ---------CCCCEEEEeCch
Confidence                     579999887543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.90  E-value=7.3e-09  Score=100.37  Aligned_cols=85  Identities=15%  Similarity=0.225  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC----CeEEEE-ccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQ-EDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~----~v~~~~-gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .+.+|||||||+|.+...|+.+  +.+++|+|+|+.+++.|+++++.++    ++++++ .|..++...     +.   .
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-----i~---~  185 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-----II---H  185 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc-----cc---c
Confidence            4579999999999988888765  6799999999999999999988652    566654 333222110     00   0


Q ss_pred             cCCCcceEeeccCccccHHH
Q 016715          214 SSSGFAKVVANIPFNISTDV  233 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy~i~~~i  233 (384)
                      ..+.||.|++|+||+.+.+-
T Consensus       186 ~~~~fDlivcNPPf~~s~~e  205 (321)
T PRK11727        186 KNERFDATLCNPPFHASAAE  205 (321)
T ss_pred             cCCceEEEEeCCCCcCcchh
Confidence            13579999999999887543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.90  E-value=9.4e-09  Score=102.79  Aligned_cols=98  Identities=17%  Similarity=0.229  Sum_probs=73.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~  197 (384)
                      +..|.+..+..+..+.  ++++|||+|||+|.++..++..++ +|++||+|+.+++.+++++..+    ++++++++|+.
T Consensus       204 ~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~  281 (396)
T PRK15128        204 YYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_pred             cChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence            4444455555555543  578999999999999988776665 8999999999999999998743    26899999997


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      ++...     +.   .....||+||.|+||...
T Consensus       282 ~~l~~-----~~---~~~~~fDlVilDPP~f~~  306 (396)
T PRK15128        282 KLLRT-----YR---DRGEKFDVIVMDPPKFVE  306 (396)
T ss_pred             HHHHH-----HH---hcCCCCCEEEECCCCCCC
Confidence            75311     00   013579999999999554

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.90  E-value=6.9e-09  Score=105.09  Aligned_cols=94  Identities=21%  Similarity=0.288  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccch
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI  201 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~  201 (384)
                      .++.....++..+++.++++|||+|||+|..|..+++.+  .+|+|+|+++.+++.+++++...+ +++++++|+.+.+.
T Consensus       228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~  307 (427)
T PRK10901        228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ  307 (427)
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh
Confidence            344455566777888899999999999999999999874  589999999999999999987543 57899999987532


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ..          ....||.|+.|+|+.
T Consensus       308 ~~----------~~~~fD~Vl~D~Pcs  324 (427)
T PRK10901        308 WW----------DGQPFDRILLDAPCS  324 (427)
T ss_pred             hc----------ccCCCCEEEECCCCC
Confidence            10          125799999999975

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.89  E-value=6.7e-09  Score=98.80  Aligned_cols=95  Identities=18%  Similarity=0.338  Sum_probs=72.3

Q ss_pred             hcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhh
Q 016715          137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ..+.++++|||||||+|..+..++.. +  .+|+++|+++.+++.++++...  .++++++.+|+.++++.+        
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~--------  144 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD--------  144 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC--------
Confidence            34568899999999999988877765 4  3799999999999999988653  348999999998877543        


Q ss_pred             hccCCCcceEeeccCcccc-------HHHHHHhcccCCC
Q 016715          212 RKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI  243 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~  243 (384)
                          +.||.|++|..++..       ..+.+.|.++|.+
T Consensus       145 ----~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l  179 (272)
T PRK11873        145 ----NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRF  179 (272)
T ss_pred             ----CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEE
Confidence                579999998655433       2444455565554

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.89  E-value=8e-09  Score=100.95  Aligned_cols=104  Identities=14%  Similarity=0.223  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh
Q 016715          127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       127 ~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (384)
                      +.+.+.+++.+.. .++.+|||||||+|.++..+++.  +.+|+++|+++.|++.++++.. ..+++++.+|+.++++.+
T Consensus        98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp~~~  176 (340)
T PLN02490         98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLPFPT  176 (340)
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCCCCC
Confidence            4555666776654 35789999999999999998875  4689999999999999998764 347899999999887643


Q ss_pred             hhhhHHhhhccCCCcceEeeccCccc-------cHHHHHHhcccCCC
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNI-------STDVIKQLLPMGDI  243 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i-------~~~il~~L~~~g~~  243 (384)
                                  +.||+|+++..++.       ..++.+.|+++|.+
T Consensus       177 ------------~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~L  211 (340)
T PLN02490        177 ------------DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKA  211 (340)
T ss_pred             ------------CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEE
Confidence                        57999998765432       23455666776664

>PRK04148 hypothetical protein; Provisional

Probab=98.89  E-value=1.4e-08  Score=85.68  Aligned_cols=93  Identities=14%  Similarity=0.227  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      .+.+.|.+.+...++.+|||||||+|. ++..|++.|.+|+|+|+++..++.++++     .+.++.+|..+.++.-   
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~---   74 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEI---   74 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHH---
Confidence            355666666665567899999999996 8889998899999999999999988776     4789999999877542   


Q ss_pred             hHHhhhccCCCcceEee-ccCccccHHHHHH
Q 016715          207 SLFERRKSSSGFAKVVA-NIPFNISTDVIKQ  236 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~-NlPy~i~~~il~~  236 (384)
                              ...+|.|.+ ++|-.+..++++-
T Consensus        75 --------y~~a~liysirpp~el~~~~~~l   97 (134)
T PRK04148         75 --------YKNAKLIYSIRPPRDLQPFILEL   97 (134)
T ss_pred             --------HhcCCEEEEeCCCHHHHHHHHHH
Confidence                    256888886 5777777666653

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.89  E-value=5.4e-09  Score=96.59  Aligned_cols=89  Identities=26%  Similarity=0.368  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchh
Q 016715          128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       128 ~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (384)
                      .+...+++.+..   ..+.+|||||||+|.++..+++.+  .+++++|+++.++..++++..  +++.++.+|+.+.++.
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~   95 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLPLE   95 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCCCC
Confidence            344445554432   334689999999999999999885  478999999999999998765  4789999999987754


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      +            +.||+|+++..++..
T Consensus        96 ~------------~~fD~vi~~~~l~~~  111 (240)
T TIGR02072        96 D------------SSFDLIVSNLALQWC  111 (240)
T ss_pred             C------------CceeEEEEhhhhhhc
Confidence            3            579999998766443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.88  E-value=8.7e-09  Score=99.92  Aligned_cols=85  Identities=24%  Similarity=0.163  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-------CCeEEEEccc
Q 016715          127 SEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDF  196 (384)
Q Consensus       127 ~~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-------~~v~~~~gD~  196 (384)
                      ..+++.+++++..   .++.+|||||||+|.++..+++.|.+|+|+|+++.|++.++++....       .++++..+|+
T Consensus       127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl  206 (315)
T PLN02585        127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL  206 (315)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence            3556777777753   25789999999999999999999999999999999999999987532       3577888886


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      .+++               +.||.|+++..
T Consensus       207 ~~l~---------------~~fD~Vv~~~v  221 (315)
T PLN02585        207 ESLS---------------GKYDTVTCLDV  221 (315)
T ss_pred             hhcC---------------CCcCEEEEcCE
Confidence            5431               57899987633

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=6.2e-09  Score=104.84  Aligned_cols=107  Identities=19%  Similarity=0.163  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~  204 (384)
                      +.+++..+++++..++++|||+.||.|++|..|+++..+|+|+|+++++++.|+++++.+  .|++++.+|+.++.... 
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~-  357 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW-  357 (432)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc-
Confidence            444455556667778899999999999999999999999999999999999999998865  38999999999876432 


Q ss_pred             hhhHHhhhccCCCcceEeeccCccccH-HHHHHhcccCC
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGD  242 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~~-~il~~L~~~g~  242 (384)
                              +....+|.||-|+|..-.. ++++.+...+.
T Consensus       358 --------~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p  388 (432)
T COG2265         358 --------WEGYKPDVVVVDPPRAGADREVLKQLAKLKP  388 (432)
T ss_pred             --------cccCCCCEEEECCCCCCCCHHHHHHHHhcCC
Confidence                    1235789999999996655 88887776554

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.88  E-value=7.9e-09  Score=92.24  Aligned_cols=82  Identities=22%  Similarity=0.320  Sum_probs=62.8

Q ss_pred             HhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+....-.++||+|||.|.+|..|+.+..+++++|+++..++.|++++...++|+++++|+.+...             .
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P-------------~  104 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWP-------------E  104 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----------------S
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCC-------------C
Confidence            455555679999999999999999999889999999999999999999888899999999977532             3


Q ss_pred             CCcceEe-eccCcccc
Q 016715          216 SGFAKVV-ANIPFNIS  230 (384)
Q Consensus       216 ~~~d~Vv-~NlPy~i~  230 (384)
                      +.||+|| +-+-|++.
T Consensus       105 ~~FDLIV~SEVlYYL~  120 (201)
T PF05401_consen  105 GRFDLIVLSEVLYYLD  120 (201)
T ss_dssp             S-EEEEEEES-GGGSS
T ss_pred             CCeeEEEEehHhHcCC
Confidence            6889875 55778886

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.87  E-value=1.7e-08  Score=95.00  Aligned_cols=90  Identities=29%  Similarity=0.295  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      .++++|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++++..++ +.    +...+...            ...|
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~----~~~~~~~~------------~~~f  180 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VE----LNVYLPQG------------DLKA  180 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CC----ceEEEccC------------CCCc
Confidence            4678999999999999999888876 59999999999999999876432 20    11111110            0258


Q ss_pred             ceEeeccCccccH----HHHHHhcccCCCeeE
Q 016715          219 AKVVANIPFNIST----DVIKQLLPMGDIFSE  246 (384)
Q Consensus       219 d~Vv~NlPy~i~~----~il~~L~~~g~~~~~  246 (384)
                      |+|++|+......    .+...|+++|.++..
T Consensus       181 D~Vvani~~~~~~~l~~~~~~~LkpgG~lils  212 (250)
T PRK00517        181 DVIVANILANPLLELAPDLARLLKPGGRLILS  212 (250)
T ss_pred             CEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9999997654333    344556666665543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.86  E-value=1.8e-08  Score=93.03  Aligned_cols=85  Identities=26%  Similarity=0.290  Sum_probs=66.4

Q ss_pred             HHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccch
Q 016715          128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI  201 (384)
Q Consensus       128 ~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~  201 (384)
                      ...+.+++++..   .++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++....   +++.+..+|+...  
T Consensus        47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--  124 (230)
T PRK07580         47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--  124 (230)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--
Confidence            445556666543   46789999999999999999999889999999999999999987542   3788999984321  


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCc
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                   .+.||+|+++-.+
T Consensus       125 -------------~~~fD~v~~~~~l  137 (230)
T PRK07580        125 -------------LGRFDTVVCLDVL  137 (230)
T ss_pred             -------------cCCcCEEEEcchh
Confidence                         1579999886544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.86  E-value=1e-08  Score=97.22  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhh
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~  206 (384)
                      .....+.+.++++|||+|||+|..|..+++.   ...|+|+|+++.+++.+++++...  .+++++++|+..++..    
T Consensus        62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~----  137 (264)
T TIGR00446        62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA----  137 (264)
T ss_pred             HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh----
Confidence            3345667788999999999999999999886   248999999999999999998754  4789999998765432    


Q ss_pred             hHHhhhccCCCcceEeeccCcc
Q 016715          207 SLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                              .+.||.|+.|+|..
T Consensus       138 --------~~~fD~Vl~D~Pcs  151 (264)
T TIGR00446       138 --------VPKFDAILLDAPCS  151 (264)
T ss_pred             --------ccCCCEEEEcCCCC
Confidence                    14699999999874

>PRK06922 hypothetical protein; Provisional

Probab=98.85  E-value=1.1e-08  Score=106.36  Aligned_cols=78  Identities=12%  Similarity=0.339  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccc--hhhhhhhHHhhhc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCH--IRSHMLSLFERRK  213 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~--~~~~~~~~~~~~~  213 (384)
                      ..++.+|||||||+|.++..+++.  +.+|+|+|+++.|++.++++.... .++.++++|+.+++  ++           
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fe-----------  484 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFE-----------  484 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccC-----------
Confidence            346789999999999999988875  569999999999999999876532 37888999998865  22           


Q ss_pred             cCCCcceEeeccCcc
Q 016715          214 SSSGFAKVVANIPFN  228 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy~  228 (384)
                       .+.+|+|++|.+++
T Consensus       485 -deSFDvVVsn~vLH  498 (677)
T PRK06922        485 -KESVDTIVYSSILH  498 (677)
T ss_pred             -CCCEEEEEEchHHH
Confidence             25799999987664

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.85  E-value=1.5e-08  Score=100.29  Aligned_cols=88  Identities=16%  Similarity=0.202  Sum_probs=68.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhh
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .+++.+....+..+||||||+|..+..+|..  +..++|+|+++.+++.+.+++...  +|+.++++|+..+...  +  
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~--~--  188 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL--L--  188 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh--C--
Confidence            3444555556779999999999999999988  469999999999999998887543  5899999999765311  0  


Q ss_pred             HHhhhccCCCcceEeeccCccc
Q 016715          208 LFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                            ..+.+|.|+.|.|.-|
T Consensus       189 ------~~~s~D~I~lnFPdPW  204 (390)
T PRK14121        189 ------PSNSVEKIFVHFPVPW  204 (390)
T ss_pred             ------CCCceeEEEEeCCCCc
Confidence                  1267999999987643

>PLN03075 nicotianamine synthase; Provisional

Probab=98.84  E-value=3.7e-08  Score=94.08  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=64.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHH--c--CCcEEEEeCCHHHHHHHHHHhcC----CCCeEEEEc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--A--GATVLAIEKDQHMVGLVRERFAS----IDQLKVLQE  194 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~--~--~~~V~avE~d~~~~~~a~~~~~~----~~~v~~~~g  194 (384)
                      |+.=.++--.++..+....+++|+|||||.|-+|..+..  .  +.+++++|+|+++++.|++.+..    .++++|..+
T Consensus       105 Y~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~  184 (296)
T PLN03075        105 YLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA  184 (296)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC
Confidence            433333333455555445778999999998866655443  2  45799999999999999998843    247999999


Q ss_pred             cccccchhhhhhhHHhhhccCCCcceEeec
Q 016715          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                      |+.+....            .+.||+|+++
T Consensus       185 Da~~~~~~------------l~~FDlVF~~  202 (296)
T PLN03075        185 DVMDVTES------------LKEYDVVFLA  202 (296)
T ss_pred             chhhcccc------------cCCcCEEEEe
Confidence            99885321            1579999987

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.83  E-value=9.6e-09  Score=99.15  Aligned_cols=97  Identities=22%  Similarity=0.302  Sum_probs=86.8

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEc-ccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQE-DFVKC  199 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~g-D~~~~  199 (384)
                      --.+|++...+++.....+|+.|||-.||||.+...+.-.|++++|.|+|.+|++-++.|+...  ....++.+ |+.++
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l  258 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL  258 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence            4578999999999999999999999999999999999999999999999999999999999865  36666666 99999


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCccccH
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                      ++++            ..+|.|++++||-.++
T Consensus       259 pl~~------------~~vdaIatDPPYGrst  278 (347)
T COG1041         259 PLRD------------NSVDAIATDPPYGRST  278 (347)
T ss_pred             CCCC------------CccceEEecCCCCccc
Confidence            9764            4699999999997765

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.83  E-value=2.1e-08  Score=93.67  Aligned_cols=111  Identities=25%  Similarity=0.367  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      .-+.-+..|+..+++.+|++|||.|.|+|.+|..|+.. +  .+|+..|+.++.++.|++++...   +++.+.++|+.+
T Consensus        24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~  103 (247)
T PF08704_consen   24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE  103 (247)
T ss_dssp             --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred             eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence            34566788999999999999999999999999999986 3  49999999999999999998753   489999999976


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccC--ccccHHHHHHh-cccCCCe
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQL-LPMGDIF  244 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlP--y~i~~~il~~L-~~~g~~~  244 (384)
                      -.+.+.         ....+|.|+.++|  +...+.+...| .++|.+.
T Consensus       104 ~g~~~~---------~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~  143 (247)
T PF08704_consen  104 EGFDEE---------LESDFDAVFLDLPDPWEAIPHAKRALKKPGGRIC  143 (247)
T ss_dssp             G--STT----------TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEE
T ss_pred             cccccc---------ccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEE
Confidence            444221         1257999999986  56677778888 6666553

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.82  E-value=2.1e-08  Score=99.00  Aligned_cols=112  Identities=14%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~  204 (384)
                      ..+++.+++.+...+ .+|||+|||+|.++..|++...+|+|||+++.+++.|++++..+  .+++++.+|+.++.....
T Consensus       184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  262 (353)
T TIGR02143       184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMN  262 (353)
T ss_pred             HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHh
Confidence            444455555554333 47999999999999999988789999999999999999998654  389999999987532100


Q ss_pred             hh-hH--Hhhh-ccCCCcceEeeccCccc-cHHHHHHhcc
Q 016715          205 ML-SL--FERR-KSSSGFAKVVANIPFNI-STDVIKQLLP  239 (384)
Q Consensus       205 ~~-~~--~~~~-~~~~~~d~Vv~NlPy~i-~~~il~~L~~  239 (384)
                      -. .+  .... .....+|+|+.|+|..- ...++..+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~  302 (353)
T TIGR02143       263 GVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA  302 (353)
T ss_pred             hccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc
Confidence            00 00  0000 00013799999999854 4566677765

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.82  E-value=2.1e-08  Score=97.26  Aligned_cols=106  Identities=24%  Similarity=0.353  Sum_probs=75.1

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHH---------cCCcEEEEeCCHHHHHHHHHHhc
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---------AGATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~---------~~~~V~avE~d~~~~~~a~~~~~  184 (384)
                      ..++..|| |.++..+++.|++.+...++++|+|..||+|.+...+.+         ...+++|+|+++.++..++.++.
T Consensus        20 ~~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~   98 (311)
T PF02384_consen   20 ESRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL   98 (311)
T ss_dssp             CTTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred             Hhccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence            34667888 889999999999999988888999999999999888776         24589999999999998887653


Q ss_pred             CC----CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          185 SI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       185 ~~----~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      -.    .+..+.++|.+.-+...          ....||+|++|+||...
T Consensus        99 l~~~~~~~~~i~~~d~l~~~~~~----------~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen   99 LHGIDNSNINIIQGDSLENDKFI----------KNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HTTHHCBGCEEEES-TTTSHSCT----------ST--EEEEEEE--CTCE
T ss_pred             hhccccccccccccccccccccc----------cccccccccCCCCcccc
Confidence            21    24568899987654321          12579999999999655

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PLN02672 methionine S-methyltransferase

Probab=98.82  E-value=1.3e-08  Score=111.71  Aligned_cols=95  Identities=13%  Similarity=0.209  Sum_probs=70.8

Q ss_pred             cCCHHHHHHHHHHhcCC-----CCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC----------
Q 016715          124 MLNSEINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI----------  186 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~-----~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~----------  186 (384)
                      +.++.-.+.+++.+...     ++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|++|...+          
T Consensus        96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~  175 (1082)
T PLN02672         96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY  175 (1082)
T ss_pred             ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence            34444455666654322     24689999999999999999873  58999999999999999987532          


Q ss_pred             --------CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          187 --------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       187 --------~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                              ++++++++|..+....           ....+|+||+|+||--
T Consensus       176 ~~~~~~l~~rV~f~~sDl~~~~~~-----------~~~~fDlIVSNPPYI~  215 (1082)
T PLN02672        176 DGEGKTLLDRVEFYESDLLGYCRD-----------NNIELDRIVGCIPQIL  215 (1082)
T ss_pred             ccccccccccEEEEECchhhhccc-----------cCCceEEEEECCCcCC
Confidence                    3689999998764311           1136999999999943

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.81  E-value=2.9e-08  Score=91.83  Aligned_cols=88  Identities=22%  Similarity=0.299  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcccccc
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKC  199 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~  199 (384)
                      .......++..+...++.+|||+|||+|.++..++..+   .+++++|+++.+++.+++++..   .+++.++.+|+.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  115 (239)
T PRK00216         36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL  115 (239)
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence            34566677777777778899999999999999999875   7999999999999999998754   24789999999887


Q ss_pred             chhhhhhhHHhhhccCCCcceEeecc
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      ++..            +.+|+|+++.
T Consensus       116 ~~~~------------~~~D~I~~~~  129 (239)
T PRK00216        116 PFPD------------NSFDAVTIAF  129 (239)
T ss_pred             CCCC------------CCccEEEEec
Confidence            6432            5789998753

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.81  E-value=2.7e-08  Score=89.46  Aligned_cols=79  Identities=14%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhh
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      +++.+...++.++||+|||.|..+..|+++|.+|+|+|+++..++.+++.....+ .++....|..+..++         
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~---------   92 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP---------   92 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T---------
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc---------
Confidence            4455555567799999999999999999999999999999999999887665333 688899998887653         


Q ss_pred             hccCCCcceEeec
Q 016715          212 RKSSSGFAKVVAN  224 (384)
Q Consensus       212 ~~~~~~~d~Vv~N  224 (384)
                          ..+|.|++.
T Consensus        93 ----~~yD~I~st  101 (192)
T PF03848_consen   93 ----EEYDFIVST  101 (192)
T ss_dssp             ----TTEEEEEEE
T ss_pred             ----CCcCEEEEE
Confidence                468998874

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK06202 hypothetical protein; Provisional

Probab=98.81  E-value=1.8e-08  Score=93.66  Aligned_cols=78  Identities=23%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~----~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .++.+|||||||+|.++..|++.    |  .+|+|+|+++.|++.++++... .++++..+|+..++..+          
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~~~----------  127 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVAEG----------  127 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccccccC----------
Confidence            46679999999999999988753    3  4899999999999999887543 46777777766655422          


Q ss_pred             cCCCcceEeeccCcccc
Q 016715          214 SSSGFAKVVANIPFNIS  230 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy~i~  230 (384)
                        +.+|+|++|..++..
T Consensus       128 --~~fD~V~~~~~lhh~  142 (232)
T PRK06202        128 --ERFDVVTSNHFLHHL  142 (232)
T ss_pred             --CCccEEEECCeeecC
Confidence              579999999776443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.81  E-value=2.4e-08  Score=98.94  Aligned_cols=109  Identities=19%  Similarity=0.215  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHh----cCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l----~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~  198 (384)
                      .|+...+.+++++    ... +.+|||++||+|.++..+++...+|+|||+++.+++.+++++..+  ++++++.+|+.+
T Consensus       187 ~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        187 PNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             cCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            5666666666554    322 357999999999999999988779999999999999999987643  489999999977


Q ss_pred             cchhhhhhhHHhhhc---------cCCCcceEeeccCccc-cHHHHHHhcc
Q 016715          199 CHIRSHMLSLFERRK---------SSSGFAKVVANIPFNI-STDVIKQLLP  239 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~---------~~~~~d~Vv~NlPy~i-~~~il~~L~~  239 (384)
                      +.. .    +.....         ....+|+||.++|+.- ...++..|..
T Consensus       266 ~l~-~----~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~  311 (362)
T PRK05031        266 FTQ-A----MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA  311 (362)
T ss_pred             HHH-H----HhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc
Confidence            521 1    000000         0124899999999954 4566777765

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=1.9e-08  Score=92.84  Aligned_cols=163  Identities=21%  Similarity=0.285  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      |.-...|+..+++.+|++|+|.|.|+|++|++|+.. |  .+|+++|+.++.++.|++|++..   +++.+..+|+.+.-
T Consensus        80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~  159 (256)
T COG2519          80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI  159 (256)
T ss_pred             CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence            445677999999999999999999999999999975 3  49999999999999999998752   35899999998875


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccC--ccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeeee
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF  278 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlP--y~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~  278 (384)
                      ..             ..+|.||.++|  ++..+.+...|++++.+.......   |-.++.+.+-.. ..|..+.+    
T Consensus       160 ~~-------------~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~v---eQv~kt~~~l~~-~g~~~ie~----  218 (256)
T COG2519         160 DE-------------EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTV---EQVEKTVEALRE-RGFVDIEA----  218 (256)
T ss_pred             cc-------------cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHHHHHh-cCccchhh----
Confidence            43             47999999985  577777888888876543222222   333333311111 12222221    


Q ss_pred             cccceEEEEeCCCCCCCCCC--CceEEEEEEEcC
Q 016715          279 YSEPEYKFKVPRTNFFPQPK--VDAAVVTFKLKQ  310 (384)
Q Consensus       279 ~~~~~~~~~v~~~~F~P~Pk--V~s~vv~l~~~~  310 (384)
                      +.-......+.+....|.-.  ..++.|.+.++.
T Consensus       219 ~E~l~R~~~v~~~~~RP~~~~v~HTgyivf~R~~  252 (256)
T COG2519         219 VETLVRRWEVRKEATRPETRMVGHTGYIVFARKL  252 (256)
T ss_pred             heeeeheeeecccccCcccccccceeEEEEEeec
Confidence            22223335677888888743  245666666543

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.79  E-value=1.5e-08  Score=105.20  Aligned_cols=105  Identities=15%  Similarity=0.277  Sum_probs=78.9

Q ss_pred             ccCCCcccCCHHHHHHHHHHhcCC-------CCCEEEEEcCcchHHHHHHHHcC----------CcEEEEeCCHHHHHHH
Q 016715          117 KSLGQHYMLNSEINDQLAAAAAVQ-------EGDIVLEIGPGTGSLTNVLLNAG----------ATVLAIEKDQHMVGLV  179 (384)
Q Consensus       117 ~~~gq~fl~~~~~~~~il~~l~~~-------~~~~VLEIG~G~G~lt~~La~~~----------~~V~avE~d~~~~~~a  179 (384)
                      |..|| |.|++.+++.|++.+...       .+.+|||.|||+|.+...++...          .+++|+|+|+.+++.+
T Consensus         1 K~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a   79 (524)
T TIGR02987         1 KAYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA   79 (524)
T ss_pred             CCCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence            45788 999999999999987432       34589999999999999887641          4789999999999999


Q ss_pred             HHHhcCCC--CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          180 RERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       180 ~~~~~~~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      +.++...+  .+.+.++|.+...+...     .  ...+.||+||+||||..
T Consensus        80 ~~~l~~~~~~~~~i~~~d~l~~~~~~~-----~--~~~~~fD~IIgNPPy~~  124 (524)
T TIGR02987        80 KKLLGEFALLEINVINFNSLSYVLLNI-----E--SYLDLFDIVITNPPYGR  124 (524)
T ss_pred             HHHHhhcCCCCceeeeccccccccccc-----c--cccCcccEEEeCCCccc
Confidence            98876443  46677777665332100     0  01257999999999964

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.78  E-value=3.3e-08  Score=100.65  Aligned_cols=92  Identities=22%  Similarity=0.326  Sum_probs=73.3

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~  200 (384)
                      ++.....+...+.+.++++|||+|||+|..|..+++.   +.+|+|+|+++.+++.+++++...  ++++++++|+.++.
T Consensus       235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~  314 (444)
T PRK14902        235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH  314 (444)
T ss_pred             EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence            3344445666777888899999999999999999986   358999999999999999988643  36999999998763


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ..           ..+.||.|+.|+|+.
T Consensus       315 ~~-----------~~~~fD~Vl~D~Pcs  331 (444)
T PRK14902        315 EK-----------FAEKFDKILVDAPCS  331 (444)
T ss_pred             ch-----------hcccCCEEEEcCCCC
Confidence            21           014799999999963

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.77  E-value=5e-08  Score=89.74  Aligned_cols=126  Identities=17%  Similarity=0.280  Sum_probs=89.9

Q ss_pred             CCCCCCcccchHHHHHHHHHHHhhC-CCChHHHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCc
Q 016715           73 RPAHSSIAGVQKGAASACIVCARSQ-DDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG  151 (384)
Q Consensus        73 ~~~~~~~~~~~~~~r~~mv~~~ir~-~~~~~~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G  151 (384)
                      ...|-....+.+.+....|...... ...|+...++|.         +|+|-+.    -+..+.++++.++.++||++||
T Consensus        44 ~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mS---------lGiHRlW----Kd~~v~~L~p~~~m~~lDvaGG  110 (296)
T KOG1540|consen   44 KCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMS---------LGIHRLW----KDMFVSKLGPGKGMKVLDVAGG  110 (296)
T ss_pred             ccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhh---------cchhHHH----HHHhhhccCCCCCCeEEEecCC
Confidence            3445555556666655555443332 233555555543         3444332    4556778888899999999999


Q ss_pred             chHHHHHHHHc--C------CcEEEEeCCHHHHHHHHHHhcC-----CCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          152 TGSLTNVLLNA--G------ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       152 ~G~lt~~La~~--~------~~V~avE~d~~~~~~a~~~~~~-----~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      ||-++..+.+.  .      .+|+.+|+++.|+..++++...     .+.+.++.+|++++|+++            +.+
T Consensus       111 TGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd------------~s~  178 (296)
T KOG1540|consen  111 TGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD------------DSF  178 (296)
T ss_pred             cchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC------------Ccc
Confidence            99999999875  2      5899999999999999988742     235999999999999876            567


Q ss_pred             ceEee
Q 016715          219 AKVVA  223 (384)
Q Consensus       219 d~Vv~  223 (384)
                      |....
T Consensus       179 D~yTi  183 (296)
T KOG1540|consen  179 DAYTI  183 (296)
T ss_pred             eeEEE
Confidence            77654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.77  E-value=2.7e-08  Score=100.80  Aligned_cols=93  Identities=14%  Similarity=0.257  Sum_probs=74.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~  198 (384)
                      ..+......+...+++.+|.+|||+|||+|..|..++..   +.+|+|+|+++.+++.+++++...  ++++++++|+.+
T Consensus       220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~  299 (431)
T PRK14903        220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER  299 (431)
T ss_pred             EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh
Confidence            333444455566778889999999999999999999986   468999999999999999998753  368999999987


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ++..           ..+.||.|+.|.|+
T Consensus       300 l~~~-----------~~~~fD~Vl~DaPC  317 (431)
T PRK14903        300 LTEY-----------VQDTFDRILVDAPC  317 (431)
T ss_pred             hhhh-----------hhccCCEEEECCCC
Confidence            6411           12579999999998

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.76  E-value=3e-08  Score=100.71  Aligned_cols=97  Identities=13%  Similarity=0.239  Sum_probs=75.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~  197 (384)
                      |..+......++..+.+.+|++|||+|||+|..|..+++.   ..+|+|+|+++.+++.+++++...  .+++++++|+.
T Consensus       234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~  313 (434)
T PRK14901        234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR  313 (434)
T ss_pred             EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence            3333444555666778888999999999999999999986   248999999999999999988754  47999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +++.....        ..+.||.|+.|.|.
T Consensus       314 ~~~~~~~~--------~~~~fD~Vl~DaPC  335 (434)
T PRK14901        314 NLLELKPQ--------WRGYFDRILLDAPC  335 (434)
T ss_pred             hccccccc--------ccccCCEEEEeCCC
Confidence            76421000        12579999999885

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.76  E-value=3.2e-08  Score=100.79  Aligned_cols=86  Identities=10%  Similarity=0.193  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~  203 (384)
                      .....+..+.+.++++|||+|||+|..|..+++.   +.+|+|+|+++.+++.+++++...  .+++++++|+.++..  
T Consensus       238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~--  315 (445)
T PRK14904        238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP--  315 (445)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--
Confidence            3444555667778899999999999999988875   358999999999999999988643  378999999987642  


Q ss_pred             hhhhHHhhhccCCCcceEeeccCc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                 ...||.|+.+.|.
T Consensus       316 -----------~~~fD~Vl~D~Pc  328 (445)
T PRK14904        316 -----------EEQPDAILLDAPC  328 (445)
T ss_pred             -----------CCCCCEEEEcCCC
Confidence                       1479999999886

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.75  E-value=9.8e-08  Score=88.01  Aligned_cols=69  Identities=20%  Similarity=0.131  Sum_probs=54.9

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------CCCCeEEEEccccc
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK  198 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--------------~~~~v~~~~gD~~~  198 (384)
                      .+..+...++.+|||+|||.|..+..|+++|.+|+|||+++.+++.+.....              ...+++++++|+.+
T Consensus        29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~  108 (218)
T PRK13255         29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA  108 (218)
T ss_pred             HHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence            4433444567799999999999999999999999999999999998743211              12478999999998


Q ss_pred             cch
Q 016715          199 CHI  201 (384)
Q Consensus       199 ~~~  201 (384)
                      ++.
T Consensus       109 l~~  111 (218)
T PRK13255        109 LTA  111 (218)
T ss_pred             CCc
Confidence            854

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.74  E-value=5.8e-08  Score=88.97  Aligned_cols=79  Identities=19%  Similarity=0.266  Sum_probs=56.2

Q ss_pred             HHHhc-CCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715          134 AAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       134 l~~l~-~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      .+... ..++++|||||||+|.++..+++..   ..|+|||+++ +        ...++++++++|+.+....+.+.+- 
T Consensus        43 ~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~-  112 (209)
T PRK11188         43 QQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLER-  112 (209)
T ss_pred             HHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHH-
Confidence            33334 3578899999999999999999873   4899999998 1        1235799999999886421111000 


Q ss_pred             hhhccCCCcceEeecc
Q 016715          210 ERRKSSSGFAKVVANI  225 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~Nl  225 (384)
                         ...+.+|+|++|+
T Consensus       113 ---~~~~~~D~V~S~~  125 (209)
T PRK11188        113 ---VGDSKVQVVMSDM  125 (209)
T ss_pred             ---hCCCCCCEEecCC
Confidence               1236799999997

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.74  E-value=1.2e-07  Score=87.13  Aligned_cols=70  Identities=17%  Similarity=0.120  Sum_probs=55.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------CCCCeEEEEcccc
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFV  197 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--------------~~~~v~~~~gD~~  197 (384)
                      ..+..+...++.+|||+|||.|.-+..|+++|.+|+|||+++.+++.+.....              ...+++++++|+.
T Consensus        25 ~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~  104 (213)
T TIGR03840        25 KHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF  104 (213)
T ss_pred             HHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence            34444443466799999999999999999999999999999999998644321              1236899999999


Q ss_pred             ccch
Q 016715          198 KCHI  201 (384)
Q Consensus       198 ~~~~  201 (384)
                      +++.
T Consensus       105 ~~~~  108 (213)
T TIGR03840       105 ALTA  108 (213)
T ss_pred             CCCc
Confidence            8764

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.74  E-value=5e-08  Score=89.28  Aligned_cols=89  Identities=17%  Similarity=0.238  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (384)
                      ......+++.+...++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++....+++.++.+|+.+.++.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  104 (223)
T TIGR01934        25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED  104 (223)
T ss_pred             HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence            3455667777766678899999999999999999874   3899999999999999988753357899999998876432


Q ss_pred             hhhhHHhhhccCCCcceEeeccCc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                  +.+|+|+++..+
T Consensus       105 ------------~~~D~i~~~~~~  116 (223)
T TIGR01934       105 ------------NSFDAVTIAFGL  116 (223)
T ss_pred             ------------CcEEEEEEeeee
Confidence                        579999876543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.74  E-value=3.5e-08  Score=89.12  Aligned_cols=81  Identities=23%  Similarity=0.323  Sum_probs=61.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc-cc-hhhhhhh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CH-IRSHMLS  207 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~-~~-~~~~~~~  207 (384)
                      +.+.+.+.  ++++|||||||+|.++..+++. +..++|+|+++.+++.++++     +++++++|+.+ ++ +.     
T Consensus         5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~-----   72 (194)
T TIGR02081         5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFP-----   72 (194)
T ss_pred             HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccC-----
Confidence            34555443  5679999999999999999875 56899999999999988652     57888999865 22 22     


Q ss_pred             HHhhhccCCCcceEeeccCcccc
Q 016715          208 LFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                             .+.||.|++|.+++..
T Consensus        73 -------~~sfD~Vi~~~~l~~~   88 (194)
T TIGR02081        73 -------DKSFDYVILSQTLQAT   88 (194)
T ss_pred             -------CCCcCEEEEhhHhHcC
Confidence                   2579999999776544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.72  E-value=5.6e-08  Score=90.21  Aligned_cols=105  Identities=22%  Similarity=0.313  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccc
Q 016715          127 SEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVK  198 (384)
Q Consensus       127 ~~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~  198 (384)
                      +++++.+++.++.   ..+..+||+|||+|+.+..++..  ...|+|||.++.++..|.+|...   .+.+.+++-+...
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            5566677766643   24568999999999999999986  45899999999999999998764   3578888654433


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~  239 (384)
                      --+..+-       ...+..|.+++|+||--..+ ..++.+
T Consensus       211 d~~~~~~-------l~~~~~dllvsNPPYI~~dD-~~~l~~  243 (328)
T KOG2904|consen  211 DASDEHP-------LLEGKIDLLVSNPPYIRKDD-NRQLKP  243 (328)
T ss_pred             ccccccc-------cccCceeEEecCCCcccccc-hhhcCc
Confidence            2111100       02368899999999977777 555554

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.72  E-value=5.8e-08  Score=90.50  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=70.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      ...+.....+...+...++++|||||||+|+.+..++..   +.+|+++|+|+.+++.|+++++..   ++++++.||+.
T Consensus        51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~  130 (234)
T PLN02781         51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL  130 (234)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence            345555444444455556789999999999999888875   459999999999999999998653   37999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeecc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      +....     +... ...+.||.|+.+.
T Consensus       131 ~~L~~-----l~~~-~~~~~fD~VfiDa  152 (234)
T PLN02781        131 SALDQ-----LLNN-DPKPEFDFAFVDA  152 (234)
T ss_pred             HHHHH-----HHhC-CCCCCCCEEEECC
Confidence            75211     0000 0125799999885

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.2e-07  Score=84.84  Aligned_cols=114  Identities=18%  Similarity=0.324  Sum_probs=92.3

Q ss_pred             CC-CcccCCHHHHHHHHHHhc--CCCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcC------
Q 016715          119 LG-QHYMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFAS------  185 (384)
Q Consensus       119 ~g-q~fl~~~~~~~~il~~l~--~~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~------  185 (384)
                      .| .-.+.-|.+.+.+++.|.  +.+|.+.||+|+|+|+||..++..    |..++|||..+++++.+++++..      
T Consensus        57 ~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e  136 (237)
T KOG1661|consen   57 IGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSE  136 (237)
T ss_pred             cCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCch
Confidence            35 335678999999999998  889999999999999999988865    44569999999999999998752      


Q ss_pred             ------CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec-cCccccHHHHHHhcccCCCe
Q 016715          186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       186 ------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy~i~~~il~~L~~~g~~~  244 (384)
                            .+++.++.||....-.+.            .++|.|... -.-.+..+++.+|+++|+++
T Consensus       137 ~~~~~~~~~l~ivvGDgr~g~~e~------------a~YDaIhvGAaa~~~pq~l~dqL~~gGrll  190 (237)
T KOG1661|consen  137 SSSKLKRGELSIVVGDGRKGYAEQ------------APYDAIHVGAAASELPQELLDQLKPGGRLL  190 (237)
T ss_pred             hhhhhccCceEEEeCCccccCCcc------------CCcceEEEccCccccHHHHHHhhccCCeEE
Confidence                  137889999998875433            678988543 34467789999999999864

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.70  E-value=1.2e-07  Score=87.97  Aligned_cols=91  Identities=19%  Similarity=0.178  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhh
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~  203 (384)
                      .++..++.+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.++++.... .++.++.+|+.+.+.. 
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-  110 (233)
T PRK05134         32 INPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE-  110 (233)
T ss_pred             hhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-
Confidence            34444556666665667889999999999999999998889999999999999999876532 2577888887765421 


Q ss_pred             hhhhHHhhhccCCCcceEeeccC
Q 016715          204 HMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                                ..+.||+|+++..
T Consensus       111 ----------~~~~fD~Ii~~~~  123 (233)
T PRK05134        111 ----------HPGQFDVVTCMEM  123 (233)
T ss_pred             ----------cCCCccEEEEhhH
Confidence                      1257999987643

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.67  E-value=6.1e-08  Score=103.91  Aligned_cols=95  Identities=16%  Similarity=0.200  Sum_probs=73.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~  197 (384)
                      +..|.+..+..+..+.  ++++|||+|||+|.++..++..|+ +|++||+|+.+++.+++++..+    ++++++++|+.
T Consensus       522 ~flDqr~~R~~~~~~~--~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~  599 (702)
T PRK11783        522 LFLDHRPTRRMIGQMA--KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL  599 (702)
T ss_pred             ECHHHHHHHHHHHHhc--CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence            3444444455544433  478999999999999999999876 6999999999999999998643    36899999987


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      ++...           ....||+||.|+||...
T Consensus       600 ~~l~~-----------~~~~fDlIilDPP~f~~  621 (702)
T PRK11783        600 AWLKE-----------AREQFDLIFIDPPTFSN  621 (702)
T ss_pred             HHHHH-----------cCCCcCEEEECCCCCCC
Confidence            64211           12579999999998543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.67  E-value=1.3e-07  Score=87.11  Aligned_cols=100  Identities=17%  Similarity=0.169  Sum_probs=73.5

Q ss_pred             CcccCCCcccCCHHHHHHHHHHhcC----CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--C
Q 016715          115 PRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q  188 (384)
Q Consensus       115 ~~~~~gq~fl~~~~~~~~il~~l~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--~  188 (384)
                      +...++.+-..++..++.+.+.+..    ..+.+|||+|||+|.++..+++.+.+++++|+++.+++.++.++...+  +
T Consensus        15 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~   94 (224)
T TIGR01983        15 PNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLK   94 (224)
T ss_pred             CCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence            3333333333455556666666652    347799999999999999999888899999999999999998876432  5


Q ss_pred             eEEEEccccccchhhhhhhHHhhhccCCCcceEeecc
Q 016715          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       189 v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      +.+..+|+.+.+...           .+.+|+|+++-
T Consensus        95 ~~~~~~d~~~~~~~~-----------~~~~D~i~~~~  120 (224)
T TIGR01983        95 IEYRCTSVEDLAEKG-----------AKSFDVVTCME  120 (224)
T ss_pred             eEEEeCCHHHhhcCC-----------CCCccEEEehh
Confidence            888889888765321           25799998864

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.66  E-value=5.2e-08  Score=96.23  Aligned_cols=111  Identities=19%  Similarity=0.173  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhh-
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS-  203 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~-  203 (384)
                      ..+++.++++++..++ .|||+.||.|++|..|+..+.+|+|||+++.+++.|++++..+  .|++++.+++.++...- 
T Consensus       183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~  261 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALA  261 (352)
T ss_dssp             HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHC
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHH
Confidence            4455555666666655 8999999999999999999999999999999999999998754  49999999887653210 


Q ss_pred             ---hhhhHHhhhccCCCcceEeeccCccccHH-HHHHhc
Q 016715          204 ---HMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLL  238 (384)
Q Consensus       204 ---~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~-il~~L~  238 (384)
                         .+.....-......+|.|+.+||..-..+ ++..+.
T Consensus       262 ~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~  300 (352)
T PF05958_consen  262 KAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK  300 (352)
T ss_dssp             CS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred             hhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence               00000000001135799999999965544 455443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.65  E-value=1.1e-07  Score=96.24  Aligned_cols=96  Identities=17%  Similarity=0.229  Sum_probs=72.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC-Ce--EEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QL--KVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~-~v--~~~~gD~~  197 (384)
                      |..++.....++..+++.++++|||+|||+|..|..+++.  +.+|+|+|+++.+++.+++++...+ .+  .+..+|..
T Consensus       220 ~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~  299 (426)
T TIGR00563       220 VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGR  299 (426)
T ss_pred             EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence            3334455667777888889999999999999999999986  3699999999999999999987543 23  34667765


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ..+...          ....||.|+.+.|..
T Consensus       300 ~~~~~~----------~~~~fD~VllDaPcS  320 (426)
T TIGR00563       300 GPSQWA----------ENEQFDRILLDAPCS  320 (426)
T ss_pred             cccccc----------cccccCEEEEcCCCC
Confidence            543200          125799999998864

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK00811 spermidine synthase; Provisional

Probab=98.65  E-value=1.4e-07  Score=90.44  Aligned_cols=74  Identities=19%  Similarity=0.317  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhc-------CCCCeEEEEccccccchhhhhhhHHhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA-------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~-------~~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      .+++||+||||+|.++..+++. + .+|++||+|+.+++.+++.+.       ..++++++.+|+.++-..         
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---------  146 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---------  146 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---------
Confidence            4679999999999999999987 4 489999999999999998764       246899999999875321         


Q ss_pred             hccCCCcceEeecc
Q 016715          212 RKSSSGFAKVVANI  225 (384)
Q Consensus       212 ~~~~~~~d~Vv~Nl  225 (384)
                        ..+.||+|++++
T Consensus       147 --~~~~yDvIi~D~  158 (283)
T PRK00811        147 --TENSFDVIIVDS  158 (283)
T ss_pred             --CCCcccEEEECC
Confidence              135799999985

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.61  E-value=2.4e-07  Score=80.10  Aligned_cols=79  Identities=23%  Similarity=0.298  Sum_probs=55.5

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       131 ~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      +.+..... ..++.+|||||||+|.++..+++.+.+|+++|+++.+++.        .++.....+.......       
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~~-------   75 (161)
T PF13489_consen   11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPFP-------   75 (161)
T ss_dssp             HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHCH-------
T ss_pred             HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhcc-------
Confidence            33333343 4578899999999999999999999999999999999988        1223333322322222       


Q ss_pred             hhhccCCCcceEeeccCccc
Q 016715          210 ERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~NlPy~i  229 (384)
                           .+.||+|+++--++.
T Consensus        76 -----~~~fD~i~~~~~l~~   90 (161)
T PF13489_consen   76 -----DGSFDLIICNDVLEH   90 (161)
T ss_dssp             -----SSSEEEEEEESSGGG
T ss_pred             -----ccchhhHhhHHHHhh
Confidence                 368999998755433

...

>PTZ00146 fibrillarin; Provisional

Probab=98.59  E-value=2.3e-07  Score=88.47  Aligned_cols=90  Identities=13%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             HHHHHHHH---HhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc-
Q 016715          128 EINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH-  200 (384)
Q Consensus       128 ~~~~~il~---~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~-  200 (384)
                      .+.+.|+.   .+.+.++++|||+|||+|+.|..+++..   ..|+|||+++++.+.+.......+|+..+.+|+.... 
T Consensus       116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~  195 (293)
T PTZ00146        116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK  195 (293)
T ss_pred             HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh
Confidence            44555544   3456789999999999999999999982   4799999999877655555433368999999986421 


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ...          ..+.+|+|+++...
T Consensus       196 y~~----------~~~~vDvV~~Dva~  212 (293)
T PTZ00146        196 YRM----------LVPMVDVIFADVAQ  212 (293)
T ss_pred             hhc----------ccCCCCEEEEeCCC
Confidence            110          12468999998753

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.59  E-value=1.7e-07  Score=86.37  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=65.3

Q ss_pred             CEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      ++|||||||+|..+..+++.  +.+|+|+|+++.+++.+++++..   .++++++.+|+.+.+++             +.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-------------~~   67 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-------------DT   67 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-------------CC
Confidence            37999999999999999887  36899999999999999998754   24789999998765432             46


Q ss_pred             cceEeeccCcc-------ccHHHHHHhcccCCC
Q 016715          218 FAKVVANIPFN-------ISTDVIKQLLPMGDI  243 (384)
Q Consensus       218 ~d~Vv~NlPy~-------i~~~il~~L~~~g~~  243 (384)
                      ||+|+++-.++       ....+...|+++|.+
T Consensus        68 fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  100 (224)
T smart00828       68 YDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHL  100 (224)
T ss_pred             CCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEE
Confidence            89998753321       122334455666544

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.57  E-value=2.6e-07  Score=88.63  Aligned_cols=93  Identities=13%  Similarity=0.269  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchh
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (384)
                      .|-+++.+++.+.+.+++.++|.+||.|..|..+++..   .+|+|+|.|+.+++.+++++...++++++++|+.++...
T Consensus         4 ~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~   83 (296)
T PRK00050          4 IPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV   83 (296)
T ss_pred             ccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH
Confidence            35678899999998899999999999999999999883   689999999999999998875545899999999987422


Q ss_pred             hhhhhHHhhhccCCCcceEeeccC
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      .      .  .....+|.|+.|+-
T Consensus        84 l------~--~~~~~vDgIl~DLG   99 (296)
T PRK00050         84 L------A--EGLGKVDGILLDLG   99 (296)
T ss_pred             H------H--cCCCccCEEEECCC
Confidence            1      0  00126888888763

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.57  E-value=2.4e-07  Score=81.23  Aligned_cols=101  Identities=20%  Similarity=0.291  Sum_probs=75.3

Q ss_pred             ChHHHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhc---CC-CCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCH
Q 016715          100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAA---VQ-EGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQ  173 (384)
Q Consensus       100 ~~~~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~---~~-~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~  173 (384)
                      .|...++-+++++....-|||..  ...++++.+.+...   +. ..++|||+|||.|.+...|++.|.  +++|||.++
T Consensus        24 ~Y~~El~Nfr~hgd~GEvWFg~~--ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~  101 (227)
T KOG1271|consen   24 AYELELTNFREHGDEGEVWFGED--AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE  101 (227)
T ss_pred             HHHHHHhhcccCCCccceecCCc--HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH
Confidence            34555666677777888899852  23455555555554   22 345999999999999999999865  699999999


Q ss_pred             HHHHHHHHHhcCC--C-CeEEEEccccccchh
Q 016715          174 HMVGLVRERFASI--D-QLKVLQEDFVKCHIR  202 (384)
Q Consensus       174 ~~~~~a~~~~~~~--~-~v~~~~gD~~~~~~~  202 (384)
                      .+++.|+...+..  + .|++.+.|+.+.++.
T Consensus       102 ~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~  133 (227)
T KOG1271|consen  102 KAVELAQNIAERDGFSNEIRFQQLDITDPDFL  133 (227)
T ss_pred             HHHHHHHHHHHhcCCCcceeEEEeeccCCccc
Confidence            9999988776543  3 499999999886543

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.56  E-value=1.6e-07  Score=84.71  Aligned_cols=84  Identities=20%  Similarity=0.336  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHhcCCC--CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc-cch
Q 016715          125 LNSEINDQLAAAAAVQE--GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CHI  201 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~--~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~-~~~  201 (384)
                      ++.++.++.++.+....  ..-|||||||+|..+..|.+.|...+|+|+++.|++.|.++.-.   -.++.+|.-+ +++
T Consensus        32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~Glpf  108 (270)
T KOG1541|consen   32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGLPF  108 (270)
T ss_pred             ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCCCC
Confidence            45677778888777655  67899999999999999999999999999999999999864211   2467777654 343


Q ss_pred             hhhhhhHHhhhccCCCcceEee
Q 016715          202 RSHMLSLFERRKSSSGFAKVVA  223 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~  223 (384)
                      .            .+.||.+|+
T Consensus       109 r------------pGtFDg~IS  118 (270)
T KOG1541|consen  109 R------------PGTFDGVIS  118 (270)
T ss_pred             C------------CCccceEEE
Confidence            3            378888875

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=3.5e-07  Score=80.17  Aligned_cols=78  Identities=23%  Similarity=0.345  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ....++|||||+|..+..|++. +  ....+.|+++.+++.-.+.+..+. ++++++.|....-.             .+
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~-------------~~  109 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR-------------NE  109 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc-------------cC
Confidence            3578999999999999999987 3  467899999999998877765443 78889998877532             26


Q ss_pred             CcceEeeccCccccH
Q 016715          217 GFAKVVANIPFNIST  231 (384)
Q Consensus       217 ~~d~Vv~NlPy~i~~  231 (384)
                      +.|+++-|+||-.++
T Consensus       110 ~VDvLvfNPPYVpt~  124 (209)
T KOG3191|consen  110 SVDVLVFNPPYVPTS  124 (209)
T ss_pred             CccEEEECCCcCcCC
Confidence            789999999996654

>PRK04457 spermidine synthase; Provisional

Probab=98.53  E-value=5.8e-07  Score=85.23  Aligned_cols=86  Identities=15%  Similarity=0.237  Sum_probs=65.1

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchh
Q 016715          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       129 ~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~  202 (384)
                      ..+.|+..+. ..++.+|||||||+|.++..+++.  +.+|++||+|+.+++.+++.+..   .++++++.+|+.++-..
T Consensus        53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~  132 (262)
T PRK04457         53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV  132 (262)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence            3444444333 335678999999999999999876  46899999999999999998753   25899999998775221


Q ss_pred             hhhhhHHhhhccCCCcceEeecc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                                 ..+.+|+|+.|.
T Consensus       133 -----------~~~~yD~I~~D~  144 (262)
T PRK04457        133 -----------HRHSTDVILVDG  144 (262)
T ss_pred             -----------CCCCCCEEEEeC
Confidence                       125789999763

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.52  E-value=3.1e-07  Score=82.54  Aligned_cols=75  Identities=17%  Similarity=0.369  Sum_probs=53.4

Q ss_pred             cCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          138 AVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+.++++|||+|||+|.++..++...   .+|+++|+++.+         ..++++++++|+.+.+..+.....    ..
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~----~~   95 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRER----VG   95 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHH----hC
Confidence            34678999999999999999998763   379999999864         125788999998775421110000    02


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+.+|+|++|.
T Consensus        96 ~~~~D~V~~~~  106 (188)
T TIGR00438        96 DDKVDVVMSDA  106 (188)
T ss_pred             CCCccEEEcCC
Confidence            25699999874

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.52  E-value=3.8e-07  Score=89.37  Aligned_cols=94  Identities=14%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC--------------------------------------
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--------------------------------------  164 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--------------------------------------  164 (384)
                      --..+.++..|+...+..++..++|-=||+|++..+.|-.+.                                      
T Consensus       173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~  252 (381)
T COG0116         173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK  252 (381)
T ss_pred             CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence            346788999999999999889999999999999999887753                                      


Q ss_pred             ---cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          165 ---TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       165 ---~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                         .++|+|+|+.+++.|+.|....   +-|++.++|+..+..+.            ..+|+||+|+||.
T Consensus       253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~------------~~~gvvI~NPPYG  310 (381)
T COG0116         253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL------------EEYGVVISNPPYG  310 (381)
T ss_pred             ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC------------CcCCEEEeCCCcc
Confidence               2779999999999999998754   37999999999876431            4789999999993

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.51  E-value=4.1e-07  Score=97.58  Aligned_cols=95  Identities=15%  Similarity=0.164  Sum_probs=76.7

Q ss_pred             cCCHHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc----------------------------------------
Q 016715          124 MLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA----------------------------------------  162 (384)
Q Consensus       124 l~~~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~----------------------------------------  162 (384)
                      -..+.+++.|+...+. .++..++|.+||+|++..+.+..                                        
T Consensus       172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            3568888999988877 56789999999999999877652                                        


Q ss_pred             ----CCcEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          163 ----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       163 ----~~~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                          ..+++|+|+|+.+++.|+.++...+   .+.+.++|+.+++...          ..+.+|+||+|+||.
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----------~~~~~d~IvtNPPYg  314 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----------PKGPTGLVISNPPYG  314 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----------ccCCCCEEEECCCCc
Confidence                1269999999999999999987543   5899999998876432          124689999999994

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.51  E-value=2.8e-07  Score=83.64  Aligned_cols=78  Identities=21%  Similarity=0.386  Sum_probs=57.3

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~--~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      ..+++.|+|..||.|.++..+++  .++.|+|+|++|..++.+++++..+   +++.++++|+.++..            
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~------------  166 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP------------  166 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------------
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC------------
Confidence            45789999999999999999999  5678999999999999999988754   378999999988753            


Q ss_pred             cCCCcceEeeccCccc
Q 016715          214 SSSGFAKVVANIPFNI  229 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy~i  229 (384)
                       ...+|.|+.|+|...
T Consensus       167 -~~~~drvim~lp~~~  181 (200)
T PF02475_consen  167 -EGKFDRVIMNLPESS  181 (200)
T ss_dssp             -TT-EEEEEE--TSSG
T ss_pred             -ccccCEEEECChHHH
Confidence             157899999999643

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.51  E-value=2.5e-07  Score=81.00  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=56.9

Q ss_pred             CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      +.|+|+.||.|.-|..+|+...+|+|||+|+..++.|+.++.-.   +++.+++||+.++.....         ....+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~---------~~~~~D   71 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK---------SNKIFD   71 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------------S
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc---------cccccc
Confidence            36999999999999999999999999999999999999998754   389999999998643210         111279


Q ss_pred             eEeeccCcccc
Q 016715          220 KVVANIPFNIS  230 (384)
Q Consensus       220 ~Vv~NlPy~i~  230 (384)
                      .|+.++|+.-.
T Consensus        72 ~vFlSPPWGGp   82 (163)
T PF09445_consen   72 VVFLSPPWGGP   82 (163)
T ss_dssp             EEEE---BSSG
T ss_pred             EEEECCCCCCc
Confidence            99999998543

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK01581 speE spermidine synthase; Validated

Probab=98.50  E-value=8.1e-07  Score=86.98  Aligned_cols=92  Identities=18%  Similarity=0.221  Sum_probs=68.0

Q ss_pred             CCHHHHHHHHHHh---cCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHH--hc-------CCCCeE
Q 016715          125 LNSEINDQLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER--FA-------SIDQLK  190 (384)
Q Consensus       125 ~~~~~~~~il~~l---~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~--~~-------~~~~v~  190 (384)
                      .|+.+...++-+.   ......+||+||||+|...+.+++..  .+|++||+|+.+++.|++.  +.       ..++++
T Consensus       131 ~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~  210 (374)
T PRK01581        131 VDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVN  210 (374)
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceE
Confidence            3455544444432   23345799999999999999999874  5899999999999999962  11       246999


Q ss_pred             EEEccccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       191 ~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ++.+|+.++-..           ..+.||+|+.++|-
T Consensus       211 vvi~Da~~fL~~-----------~~~~YDVIIvDl~D  236 (374)
T PRK01581        211 VHVCDAKEFLSS-----------PSSLYDVIIIDFPD  236 (374)
T ss_pred             EEECcHHHHHHh-----------cCCCccEEEEcCCC
Confidence            999999985322           23579999999764

>PLN02366 spermidine synthase

Probab=98.50  E-value=6.8e-07  Score=86.51  Aligned_cols=91  Identities=11%  Similarity=0.181  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcc
Q 016715          127 SEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQED  195 (384)
Q Consensus       127 ~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD  195 (384)
                      ......++.++.   ....++||+||||.|.+...+++..  .+|+.||+|+.+++.+++.+..      .++++++.+|
T Consensus        74 e~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D  153 (308)
T PLN02366         74 ECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD  153 (308)
T ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence            344555655543   2456799999999999999999873  4899999999999999997642      3589999999


Q ss_pred             ccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +.++-...          ..+.||+|+.+.+-
T Consensus       154 a~~~l~~~----------~~~~yDvIi~D~~d  175 (308)
T PLN02366        154 GVEFLKNA----------PEGTYDAIIVDSSD  175 (308)
T ss_pred             HHHHHhhc----------cCCCCCEEEEcCCC
Confidence            87643210          12579999988643

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.49  E-value=1.3e-08  Score=81.55  Aligned_cols=76  Identities=28%  Similarity=0.369  Sum_probs=46.7

Q ss_pred             EEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       146 LEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      ||||||+|.++..+++.  ..+++++|+|+.|++.+++++....  +...+..+..+.....          ..+.||.|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~fD~V   70 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD----------PPESFDLV   70 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC----------C----SEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc----------ccccccee
Confidence            79999999999999998  6799999999999988888776533  3344444433322111          11489999


Q ss_pred             eeccCccccH
Q 016715          222 VANIPFNIST  231 (384)
Q Consensus       222 v~NlPy~i~~  231 (384)
                      +++-.++...
T Consensus        71 ~~~~vl~~l~   80 (99)
T PF08242_consen   71 VASNVLHHLE   80 (99)
T ss_dssp             EEE-TTS--S
T ss_pred             hhhhhHhhhh
Confidence            9876655443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.49  E-value=3.6e-07  Score=86.95  Aligned_cols=82  Identities=23%  Similarity=0.361  Sum_probs=66.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (384)
                      .+.+++....-.++.|||+|||+|.++...++.|+ +|++||.+ +|.++|++.++.+   +++.++.|.++++.+++  
T Consensus       166 ~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE--  242 (517)
T KOG1500|consen  166 QRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE--  242 (517)
T ss_pred             HHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch--
Confidence            34455544445688999999999999999999977 89999976 7889999887754   48999999999998763  


Q ss_pred             hhHHhhhccCCCcceEeecc
Q 016715          206 LSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                                 ..|+||+.+
T Consensus       243 -----------k~DviISEP  251 (517)
T KOG1500|consen  243 -----------KVDVIISEP  251 (517)
T ss_pred             -----------hccEEEecc
Confidence                       678888864

>PLN02476 O-methyltransferase

Probab=98.49  E-value=7.4e-07  Score=84.68  Aligned_cols=98  Identities=11%  Similarity=0.146  Sum_probs=74.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      ...+...+.+...+...+.++|||||+|+|+.|..++..   +.+|+++|.++..++.|+++++..   ++++++.||+.
T Consensus       101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~  180 (278)
T PLN02476        101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA  180 (278)
T ss_pred             ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            456666666666666667889999999999999999974   457999999999999999998753   48999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +.....     ... ...+.||.|+.+.+-
T Consensus       181 e~L~~l-----~~~-~~~~~FD~VFIDa~K  204 (278)
T PLN02476        181 ESLKSM-----IQN-GEGSSYDFAFVDADK  204 (278)
T ss_pred             HHHHHH-----Hhc-ccCCCCCEEEECCCH
Confidence            753210     000 012579999987653

>TIGR03438 probable methyltransferase

Probab=98.48  E-value=1.1e-06  Score=84.97  Aligned_cols=67  Identities=25%  Similarity=0.379  Sum_probs=53.4

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC-CC--CeEEEEcccccc
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-ID--QLKVLQEDFVKC  199 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~-~~--~v~~~~gD~~~~  199 (384)
                      +.|++.+.  ++.+|||+|||+|..|..|++.   +.+|+++|+|++|++.+++++.. .+  ++..+++|+.+.
T Consensus        55 ~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        55 DEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             HHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            34444443  5678999999999999999987   47999999999999999988753 23  467789999763

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.48  E-value=4.6e-07  Score=86.01  Aligned_cols=73  Identities=14%  Similarity=0.206  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcCcchH----HHHHHHHc-------CCcEEEEeCCHHHHHHHHHHhc------C-----------------
Q 016715          140 QEGDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRERFA------S-----------------  185 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~----lt~~La~~-------~~~V~avE~d~~~~~~a~~~~~------~-----------------  185 (384)
                      .++.+|||+|||+|.    ++..+++.       +.+|+|+|+|+.|++.|++..-      .                 
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345699999999996    45555553       2489999999999999997531      0                 


Q ss_pred             ------CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715          186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       186 ------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                            ..+|++.++|+.+.+++.            +.||+|++.
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~------------~~fD~I~cr  210 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPL------------GDFDLIFCR  210 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCcc------------CCCCEEEec
Confidence                  026889999998876432            579999984

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.46  E-value=8.3e-07  Score=69.41  Aligned_cols=75  Identities=27%  Similarity=0.414  Sum_probs=59.9

Q ss_pred             EEEEEcCcchHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          144 IVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~-~~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      +|+|+|||.|.++..++. .+.+++++|+++..+..+++...  ...+++++.+|+.+....           ..+.+|.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~   69 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-----------ADESFDV   69 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-----------cCCceEE
Confidence            489999999999999998 46699999999999998884332  224789999998886531           1257999


Q ss_pred             EeeccCccc
Q 016715          221 VVANIPFNI  229 (384)
Q Consensus       221 Vv~NlPy~i  229 (384)
                      |+.|.+++.
T Consensus        70 i~~~~~~~~   78 (107)
T cd02440          70 IISDPPLHH   78 (107)
T ss_pred             EEEccceee
Confidence            999998865

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.45  E-value=1.3e-06  Score=82.96  Aligned_cols=106  Identities=20%  Similarity=0.245  Sum_probs=71.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHH--HHhc-CCCCeEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVR--ERFA-SIDQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~--~~~~-~~~~v~~~~gD~~~~~~~~~~  205 (384)
                      -+++..++..-.|++|||||||.|+.+..|+.+|+ .|+|+|.+.....+.+  +++. ....+..+---+++++.    
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----  179 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----  179 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----
Confidence            34567777666899999999999999999999987 6999999988766533  2222 22233333233444442    


Q ss_pred             hhHHhhhccCCCcceEeec-cCccccHHH------HHHhcccCCCeeEEE
Q 016715          206 LSLFERRKSSSGFAKVVAN-IPFNISTDV------IKQLLPMGDIFSEVV  248 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~N-lPy~i~~~i------l~~L~~~g~~~~~~~  248 (384)
                               .+.||.|++- .=||..+++      ...|.++|.++-+..
T Consensus       180 ---------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  180 ---------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             ---------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence                     2679999874 666666554      335566777665443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.45  E-value=2.3e-07  Score=84.33  Aligned_cols=115  Identities=23%  Similarity=0.308  Sum_probs=87.8

Q ss_pred             HhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHh-cC---CCCeEEEEccccccchhhhhhhHHh
Q 016715          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-AS---IDQLKVLQEDFVKCHIRSHMLSLFE  210 (384)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~-~~---~~~v~~~~gD~~~~~~~~~~~~~~~  210 (384)
                      ...++.|.+|||...|.|+.++..+++|+ +|+.+|.|+..++.|+-|- ..   ..+++++.||+.++-..        
T Consensus       129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~--------  200 (287)
T COG2521         129 LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD--------  200 (287)
T ss_pred             eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc--------
Confidence            34566799999999999999999999999 9999999999999887542 11   13789999999885321        


Q ss_pred             hhccCCCcceEeeccCc-cccH---------HHHHHhcccCCCeeEE--------EEEeeHHHHHHHh
Q 016715          211 RRKSSSGFAKVVANIPF-NIST---------DVIKQLLPMGDIFSEV--------VLLLQEETALRLV  260 (384)
Q Consensus       211 ~~~~~~~~d~Vv~NlPy-~i~~---------~il~~L~~~g~~~~~~--------~~~~qke~a~rl~  260 (384)
                        .....||.||.++|. .+..         ++.+-|+++|++|...        ..-+|+++++||-
T Consensus       201 --~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr  266 (287)
T COG2521         201 --FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR  266 (287)
T ss_pred             --CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence              123679999999995 4443         4456777888887543        3567888888886

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.43  E-value=1.7e-06  Score=83.74  Aligned_cols=73  Identities=18%  Similarity=0.244  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccch
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI  201 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~  201 (384)
                      ...+.+++.+...++.+|||||||+|.++..++++  +.+++++|. +.+++.+++++...   ++++++.+|+.+.++
T Consensus       136 ~~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~  213 (306)
T TIGR02716       136 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY  213 (306)
T ss_pred             hHHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence            34566777788888899999999999999999988  458999997 78999998877642   479999999987543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.42  E-value=1.2e-06  Score=81.14  Aligned_cols=98  Identities=17%  Similarity=0.243  Sum_probs=59.8

Q ss_pred             HHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHH-HHHHhcCCCCeE-EEEccccccchhhhh
Q 016715          130 NDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGL-VRERFASIDQLK-VLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~-a~~~~~~~~~v~-~~~gD~~~~~~~~~~  205 (384)
                      ++.+++...+ .++..|||+|||+|.+|..+++.|+ +|+|+|+++.|+.. +++    ++++. +...|+....+.+..
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~----~~~v~~~~~~ni~~~~~~~~~  138 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ----DERVKVLERTNIRYVTPADIF  138 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc----CCCeeEeecCCcccCCHhHcC
Confidence            4455555554 3677999999999999999999965 79999999987765 332    23433 333344443333210


Q ss_pred             hhHHhhhccCCCcceEeeccCccccHHHHHHhcc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~  239 (384)
                      .       ....+|+++..+-+ +.+++...|.+
T Consensus       139 ~-------d~~~~DvsfiS~~~-~l~~i~~~l~~  164 (228)
T TIGR00478       139 P-------DFATFDVSFISLIS-ILPELDLLLNP  164 (228)
T ss_pred             C-------CceeeeEEEeehHh-HHHHHHHHhCc
Confidence            0       11356666654433 34455555554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK03612 spermidine synthase; Provisional

Probab=98.42  E-value=7.5e-07  Score=92.44  Aligned_cols=78  Identities=19%  Similarity=0.284  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHH--hc-------CCCCeEEEEccccccchhhhhhhH
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER--FA-------SIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~--~~-------~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      .++++|||||||+|..+..++++.  .+|++||+|+++++.++++  +.       ++++++++.+|+.+.-..      
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~------  369 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK------  369 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh------
Confidence            356799999999999999999874  5999999999999999983  21       235899999999874211      


Q ss_pred             HhhhccCCCcceEeeccCcc
Q 016715          209 FERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy~  228 (384)
                           ..+.||+|++|+|..
T Consensus       370 -----~~~~fDvIi~D~~~~  384 (521)
T PRK03612        370 -----LAEKFDVIIVDLPDP  384 (521)
T ss_pred             -----CCCCCCEEEEeCCCC
Confidence                 235899999998753

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.37  E-value=1.1e-06  Score=80.18  Aligned_cols=81  Identities=25%  Similarity=0.282  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      ....+|||||||+|+.|..+++.   +.+|+++|+|+...+.|++.+...   ++++++.||+.+.-...     ... .
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l-----~~~-~  117 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL-----AND-G  117 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH-----HHT-T
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH-----Hhc-c
Confidence            35679999999999999999985   579999999999999999988743   38999999998853211     000 0


Q ss_pred             cCCCcceEeeccC
Q 016715          214 SSSGFAKVVANIP  226 (384)
Q Consensus       214 ~~~~~d~Vv~NlP  226 (384)
                      ..+.||.|+.+-.
T Consensus       118 ~~~~fD~VFiDa~  130 (205)
T PF01596_consen  118 EEGQFDFVFIDAD  130 (205)
T ss_dssp             TTTSEEEEEEEST
T ss_pred             CCCceeEEEEccc
Confidence            1257999998754

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00417 speE spermidine synthase

Probab=98.37  E-value=2.3e-06  Score=81.51  Aligned_cols=76  Identities=17%  Similarity=0.256  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      .+++|||||||+|.++..+++..  .+++++|+|+.+++.+++.+..      .++++++.+|+.+.-..          
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----------  141 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----------  141 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----------
Confidence            45699999999999999998874  4899999999999999987632      24788999888764211          


Q ss_pred             ccCCCcceEeeccCc
Q 016715          213 KSSSGFAKVVANIPF  227 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy  227 (384)
                       ..+.||+||.+.+.
T Consensus       142 -~~~~yDvIi~D~~~  155 (270)
T TIGR00417       142 -TENTFDVIIVDSTD  155 (270)
T ss_pred             -CCCCccEEEEeCCC
Confidence             12579999998763

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.36  E-value=9.6e-07  Score=79.01  Aligned_cols=74  Identities=19%  Similarity=0.222  Sum_probs=59.3

Q ss_pred             CCEEEEEcCcchHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhcCC--CCeE-EEEccccccc-hhhhhhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI--DQLK-VLQEDFVKCH-IRSHMLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~-~~~~V~avE~d~~~~~~a~~~~~~~--~~v~-~~~gD~~~~~-~~~~~~~~~~~~~~~~  216 (384)
                      ...|||||||||.--...-- .+..|+++|.++.|-+++.+.++..  .++. ++++|+++++ +++            +
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d------------~  144 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLAD------------G  144 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccccc------------C
Confidence            34689999999998877654 3789999999999999999887643  3666 9999999987 333            6


Q ss_pred             CcceEeeccCc
Q 016715          217 GFAKVVANIPF  227 (384)
Q Consensus       217 ~~d~Vv~NlPy  227 (384)
                      ++|.||+-+-.
T Consensus       145 s~DtVV~TlvL  155 (252)
T KOG4300|consen  145 SYDTVVCTLVL  155 (252)
T ss_pred             CeeeEEEEEEE
Confidence            89999886543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.36  E-value=1.2e-06  Score=84.52  Aligned_cols=72  Identities=22%  Similarity=0.319  Sum_probs=59.3

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhhhHHhhhccC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      -.++.|||+|||+|.++...|+.|+ +|+|||.+.-+ +.+.+.+..++   -+++++|.++++.++.            
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~------------  125 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPV------------  125 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCc------------
Confidence            4688999999999999999999987 89999987544 88887766442   5899999999986652            


Q ss_pred             CCcceEeec
Q 016715          216 SGFAKVVAN  224 (384)
Q Consensus       216 ~~~d~Vv~N  224 (384)
                      ++.|+||+-
T Consensus       126 eKVDiIvSE  134 (346)
T KOG1499|consen  126 EKVDIIVSE  134 (346)
T ss_pred             cceeEEeeh
Confidence            578999874

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.36  E-value=3.7e-06  Score=77.65  Aligned_cols=76  Identities=14%  Similarity=0.135  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------CCCCeE
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLK  190 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--------------~~~~v~  190 (384)
                      .++.+.+.+ ..+...++.+||..|||.|.-...|+++|.+|+|+|+++..++.+.+...              ...+++
T Consensus        28 pnp~L~~~~-~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  106 (226)
T PRK13256         28 PNEFLVKHF-SKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE  106 (226)
T ss_pred             CCHHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence            455555554 33444567899999999999999999999999999999999999866321              124789


Q ss_pred             EEEccccccch
Q 016715          191 VLQEDFVKCHI  201 (384)
Q Consensus       191 ~~~gD~~~~~~  201 (384)
                      ++++|+.+++.
T Consensus       107 ~~~gD~f~l~~  117 (226)
T PRK13256        107 IYVADIFNLPK  117 (226)
T ss_pred             EEEccCcCCCc
Confidence            99999999864

>PRK10742 putative methyltransferase; Provisional

Probab=98.36  E-value=1.7e-06  Score=80.37  Aligned_cols=88  Identities=17%  Similarity=0.226  Sum_probs=72.7

Q ss_pred             HHHHHHhcCCCCC--EEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-----------CCeEEEEcccc
Q 016715          131 DQLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFV  197 (384)
Q Consensus       131 ~~il~~l~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-----------~~v~~~~gD~~  197 (384)
                      +.|++.++++++.  +|||.-+|+|..+..++.+|++|+++|.++.+...++..+...           .+++++++|..
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~  155 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence            4577778888887  9999999999999999999999999999999999888776531           36889999988


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ++.-.           ....||+|+.++||-.
T Consensus       156 ~~L~~-----------~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        156 TALTD-----------ITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHhh-----------CCCCCcEEEECCCCCC
Confidence            76422           1247999999999944

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.36  E-value=2.7e-06  Score=77.94  Aligned_cols=88  Identities=23%  Similarity=0.286  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCC---CeEEEE-cccccc
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQ-EDFVKC  199 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~---~v~~~~-gD~~~~  199 (384)
                      +.....+...+.....++|||||++.|+.+..|+..   ..+++++|+++++++.|+++++..+   .++++. ||+++.
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            555555555566667889999999999999999985   3589999999999999999997543   688888 588875


Q ss_pred             chhhhhhhHHhhhccCCCcceEeec
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                      -...          ..+.||.||.+
T Consensus       125 l~~~----------~~~~fDliFID  139 (219)
T COG4122         125 LSRL----------LDGSFDLVFID  139 (219)
T ss_pred             HHhc----------cCCCccEEEEe
Confidence            4321          23789999975

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.35  E-value=2.4e-06  Score=85.12  Aligned_cols=102  Identities=16%  Similarity=0.114  Sum_probs=75.4

Q ss_pred             cccCCHHHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccc
Q 016715          122 HYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF  196 (384)
Q Consensus       122 ~fl~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~  196 (384)
                      |.-.+..+...+++.+... ++.+|||++||+|.++..++.. + .+|+++|+++.+++.++++++.+  +++++.++|+
T Consensus        37 ~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da  116 (382)
T PRK04338         37 RMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA  116 (382)
T ss_pred             cccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH
Confidence            3444556666666666533 3468999999999999999876 4 38999999999999999998643  3677899998


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHH
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ  236 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~  236 (384)
                      .++...            .+.||+|+.|+| ....+.+..
T Consensus       117 ~~~l~~------------~~~fD~V~lDP~-Gs~~~~l~~  143 (382)
T PRK04338        117 NALLHE------------ERKFDVVDIDPF-GSPAPFLDS  143 (382)
T ss_pred             HHHHhh------------cCCCCEEEECCC-CCcHHHHHH
Confidence            664211            146999999975 555566544

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.30  E-value=3.1e-06  Score=82.43  Aligned_cols=97  Identities=18%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~  206 (384)
                      .++++...  +|.+|+|..||-|.++..+|..|+. |+|+|++|..++.+++++..+.   .+..++||+.++....   
T Consensus       180 ~Rva~~v~--~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---  254 (341)
T COG2520         180 ARVAELVK--EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---  254 (341)
T ss_pred             HHHHhhhc--CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---
Confidence            34555443  5899999999999999999999875 9999999999999999987553   4889999999986532   


Q ss_pred             hHHhhhccCCCcceEeeccCcc---ccHHHHHHhcccC
Q 016715          207 SLFERRKSSSGFAKVVANIPFN---ISTDVIKQLLPMG  241 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~---i~~~il~~L~~~g  241 (384)
                               +.+|.|+.|+|..   .....+..+..+|
T Consensus       255 ---------~~aDrIim~~p~~a~~fl~~A~~~~k~~g  283 (341)
T COG2520         255 ---------GVADRIIMGLPKSAHEFLPLALELLKDGG  283 (341)
T ss_pred             ---------ccCCEEEeCCCCcchhhHHHHHHHhhcCc
Confidence                     5789999999974   3334455555533

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.29  E-value=2.8e-06  Score=78.35  Aligned_cols=85  Identities=18%  Similarity=0.217  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------CCCCeEE
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKV  191 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--------------~~~~v~~  191 (384)
                      +|.+.+. ++.+...++.+||..|||.|.-...|+++|.+|+|+|+++.+++.+.+...              ..++|++
T Consensus        23 ~p~L~~~-~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  101 (218)
T PF05724_consen   23 NPALVEY-LDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI  101 (218)
T ss_dssp             THHHHHH-HHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred             CHHHHHH-HHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence            4444444 444666777899999999999999999999999999999999999844321              1236899


Q ss_pred             EEccccccchhhhhhhHHhhhccCCCcceEe
Q 016715          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (384)
Q Consensus       192 ~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv  222 (384)
                      .+||+.+++...           .+.||.|+
T Consensus       102 ~~gDfF~l~~~~-----------~g~fD~iy  121 (218)
T PF05724_consen  102 YCGDFFELPPED-----------VGKFDLIY  121 (218)
T ss_dssp             EES-TTTGGGSC-----------HHSEEEEE
T ss_pred             EEcccccCChhh-----------cCCceEEE
Confidence            999999987543           14688886

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=4.6e-06  Score=83.88  Aligned_cols=108  Identities=13%  Similarity=0.107  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~  204 (384)
                      +-+...+=++++...+..+||+.||||.++..+++...+|+|||+++..++.|+.+...++  |.++++|-++++-... 
T Consensus       369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl-  447 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSL-  447 (534)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchh-
Confidence            4445556667788888999999999999999999999999999999999999999987654  9999999777653221 


Q ss_pred             hhhHHhhhccCCCcc-eEeeccCccc-cHHHHHHhcccC
Q 016715          205 MLSLFERRKSSSGFA-KVVANIPFNI-STDVIKQLLPMG  241 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d-~Vv~NlPy~i-~~~il~~L~~~g  241 (384)
                      +.+      ..+.-+ ++|.|+|..- ...++..|....
T Consensus       448 ~~~------~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~  480 (534)
T KOG2187|consen  448 LTP------CCDSETLVAIIDPPRKGLHMKVIKALRAYK  480 (534)
T ss_pred             ccc------CCCCCceEEEECCCcccccHHHHHHHHhcc
Confidence            100      112234 6788999843 344555665543

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.17  E-value=2.7e-06  Score=74.96  Aligned_cols=61  Identities=28%  Similarity=0.369  Sum_probs=54.9

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchh
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~  202 (384)
                      .+.+.|+|+|+|.++...++...+|+|||.||.-.+.|.+++.  ...|++++.||+.+.++.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe   95 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE   95 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc
Confidence            3789999999999999999988899999999999999999964  445999999999999873

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.17  E-value=9.5e-06  Score=82.43  Aligned_cols=70  Identities=27%  Similarity=0.508  Sum_probs=53.3

Q ss_pred             CCEEEEEcCcchHHHHHHHHcC------CcEEEEeCCHHHHHHHHHHhcC--C-CCeEEEEccccccchhhhhhhHHhhh
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAG------ATVLAIEKDQHMVGLVRERFAS--I-DQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~------~~V~avE~d~~~~~~a~~~~~~--~-~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      +..|+|||||+|.|....++.+      .+|+|||.++.++..+++++..  . ++|+++++|+.++..+          
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----------  256 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----------  256 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----------
Confidence            5689999999999998777654      4899999999988887766332  2 5899999999999765          


Q ss_pred             ccCCCcceEeec
Q 016715          213 KSSSGFAKVVAN  224 (384)
Q Consensus       213 ~~~~~~d~Vv~N  224 (384)
                         ...|+||+-
T Consensus       257 ---ekvDIIVSE  265 (448)
T PF05185_consen  257 ---EKVDIIVSE  265 (448)
T ss_dssp             ---S-EEEEEE-
T ss_pred             ---CceeEEEEe
Confidence               478999864

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.16  E-value=9.4e-06  Score=76.10  Aligned_cols=96  Identities=14%  Similarity=0.090  Sum_probs=69.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      ..+...+.+...+.....++|||||+++|+.|..++..   +.+|+++|.++...+.|++++...   ++|+++.||+.+
T Consensus        63 ~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e  142 (247)
T PLN02589         63 TSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP  142 (247)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence            34555555554555556679999999999999999875   569999999999999999988643   489999999988


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeecc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      .-...     .......+.||.|+.+-
T Consensus       143 ~L~~l-----~~~~~~~~~fD~iFiDa  164 (247)
T PLN02589        143 VLDQM-----IEDGKYHGTFDFIFVDA  164 (247)
T ss_pred             HHHHH-----HhccccCCcccEEEecC
Confidence            53221     00000125799999763

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.16  E-value=1e-05  Score=73.37  Aligned_cols=76  Identities=22%  Similarity=0.376  Sum_probs=57.4

Q ss_pred             CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      ...+||||||.|.....+|..  +..++|||+....+..+..+..  ..+|+.++++|+..+-..     ++    ..+.
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~-----~~----~~~~   88 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR-----LF----PPGS   88 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH-----HS----TTTS
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh-----cc----cCCc
Confidence            348999999999999999987  5689999999999998887765  356999999999884211     11    2367


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .+.|.-|.|
T Consensus        89 v~~i~i~FP   97 (195)
T PF02390_consen   89 VDRIYINFP   97 (195)
T ss_dssp             EEEEEEES-
T ss_pred             hheEEEeCC
Confidence            888988876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.11  E-value=9.1e-06  Score=74.11  Aligned_cols=98  Identities=17%  Similarity=0.331  Sum_probs=63.9

Q ss_pred             cCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhc-------C---
Q 016715          118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA-------S---  185 (384)
Q Consensus       118 ~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~-------~---  185 (384)
                      .||.   +.+.....|++.+++.+++..+|||||.|......+.. ++ +.+|||+.+...+.++....       .   
T Consensus        22 ~YGE---i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~   98 (205)
T PF08123_consen   22 TYGE---ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK   98 (205)
T ss_dssp             CGGG---CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred             ceee---cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence            4555   56788889999999999999999999999998777654 65 59999999998877764321       1   


Q ss_pred             -CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec-cCc
Q 016715          186 -IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF  227 (384)
Q Consensus       186 -~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy  227 (384)
                       ...+++.+||+.+.++....   +      ...|+|+.| .-|
T Consensus        99 ~~~~v~l~~gdfl~~~~~~~~---~------s~AdvVf~Nn~~F  133 (205)
T PF08123_consen   99 RPGKVELIHGDFLDPDFVKDI---W------SDADVVFVNNTCF  133 (205)
T ss_dssp             ---EEEEECS-TTTHHHHHHH---G------HC-SEEEE--TTT
T ss_pred             ccccceeeccCccccHhHhhh---h------cCCCEEEEecccc
Confidence             23788999999887654311   1      246788776 444

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.10  E-value=9.5e-06  Score=80.65  Aligned_cols=95  Identities=18%  Similarity=0.249  Sum_probs=73.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~----~v~~~~gD~~  197 (384)
                      |..|.+...+.+....  .|++||++.|=||.++..++..|+ +|++||.|...++.|++|++.++    .+.++++|+.
T Consensus       201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf  278 (393)
T COG1092         201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF  278 (393)
T ss_pred             eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence            3444444444444332  389999999999999999999998 99999999999999999987543    5889999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ++--...        ..+..||+||.+||-
T Consensus       279 ~~l~~~~--------~~g~~fDlIilDPPs  300 (393)
T COG1092         279 KWLRKAE--------RRGEKFDLIILDPPS  300 (393)
T ss_pred             HHHHHHH--------hcCCcccEEEECCcc
Confidence            8643210        134589999999985

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.08  E-value=1.2e-05  Score=74.38  Aligned_cols=76  Identities=25%  Similarity=0.288  Sum_probs=61.4

Q ss_pred             CEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          143 DIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      ..+||||||.|.....+|+..  ..++|||+....+..|.+.+...  +|+.++++|+.++...-         ...+..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~---------~~~~sl  120 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL---------IPDGSL  120 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc---------CCCCCe
Confidence            589999999999999999984  48999999999999888877642  49999999998864221         122478


Q ss_pred             ceEeeccCc
Q 016715          219 AKVVANIPF  227 (384)
Q Consensus       219 d~Vv~NlPy  227 (384)
                      |.|+-|.|=
T Consensus       121 ~~I~i~FPD  129 (227)
T COG0220         121 DKIYINFPD  129 (227)
T ss_pred             eEEEEECCC
Confidence            999999874

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.05  E-value=3.1e-06  Score=76.90  Aligned_cols=86  Identities=17%  Similarity=0.216  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (384)
                      -|..++.++..++..+-+++||+|||||-.+..|..+..+++|||+|.+|++.|.++-- ++  .+.++|+..+...   
T Consensus       110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~-YD--~L~~Aea~~Fl~~---  183 (287)
T COG4976         110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL-YD--TLYVAEAVLFLED---  183 (287)
T ss_pred             cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc-hH--HHHHHHHHHHhhh---
Confidence            36677888888877767899999999999999999999999999999999999987621 11  2333444332110   


Q ss_pred             hhHHhhhccCCCcceEeec
Q 016715          206 LSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~N  224 (384)
                             +....+|+|++.
T Consensus       184 -------~~~er~DLi~Aa  195 (287)
T COG4976         184 -------LTQERFDLIVAA  195 (287)
T ss_pred             -------ccCCcccchhhh
Confidence                   234678999873

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.02  E-value=2.9e-05  Score=72.34  Aligned_cols=110  Identities=21%  Similarity=0.307  Sum_probs=78.6

Q ss_pred             cCCCcccCCHHHHHHHHHHhc-----CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEE
Q 016715          118 SLGQHYMLNSEINDQLAAAAA-----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL  192 (384)
Q Consensus       118 ~~gq~fl~~~~~~~~il~~l~-----~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~  192 (384)
                      ..|.-|+.+..-..+++..-.     .....++||||+|.|..|..++..-.+|++.|.|+.|...++++     +.+++
T Consensus        66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g~~vl  140 (265)
T PF05219_consen   66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----GFTVL  140 (265)
T ss_pred             cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----CCeEE
Confidence            456778888877788877552     12456899999999999999999888999999999998888875     45555


Q ss_pred             EccccccchhhhhhhHHhhhccCCCcceEee-c------cCccccHHHHHHhcccCCCeeE
Q 016715          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVA-N------IPFNISTDVIKQLLPMGDIFSE  246 (384)
Q Consensus       193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~-N------lPy~i~~~il~~L~~~g~~~~~  246 (384)
                      ..|  ++.-            ....||+|.+ |      -|.....++...|.+.|.++..
T Consensus       141 ~~~--~w~~------------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  141 DID--DWQQ------------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             ehh--hhhc------------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence            332  2221            1246888864 4      3666667777777776665433

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.01  E-value=3e-05  Score=74.27  Aligned_cols=99  Identities=17%  Similarity=0.212  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhcCCC-----CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccc
Q 016715          128 EINDQLAAAAAVQE-----GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDF  196 (384)
Q Consensus       128 ~~~~~il~~l~~~~-----~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~  196 (384)
                      +++..|.+.+....     .-++||||||.-.+=..|..+  +.+++|.|+|+..++.|++++..+    ++|+++...-
T Consensus        84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~  163 (299)
T PF05971_consen   84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN  163 (299)
T ss_dssp             HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred             HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence            34555555554322     348999999987665555443  889999999999999999998765    2688876543


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCccccHHH
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~i  233 (384)
                      ...-+..    +..   ....||..++|+||+-+.+-
T Consensus       164 ~~~i~~~----i~~---~~e~~dftmCNPPFy~s~~e  193 (299)
T PF05971_consen  164 PDNIFDG----IIQ---PNERFDFTMCNPPFYSSQEE  193 (299)
T ss_dssp             T-SSTTT----STT-----S-EEEEEE-----SS---
T ss_pred             ccccchh----hhc---ccceeeEEecCCccccChhh
Confidence            2211111    111   22579999999999887644

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=3.8e-05  Score=71.57  Aligned_cols=103  Identities=21%  Similarity=0.263  Sum_probs=81.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (384)
                      +..|+..+++.+|.+|+|-|+|+|.++.++++.-   .+++..|++..-.+.|.+.+...   +++.+.+-|+....+..
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            5678889999999999999999999999999873   49999999999999999888642   49999999998876643


Q ss_pred             hhhhHHhhhccCCCcceEeeccCccc--cHHHHHHhcccCC
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGD  242 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L~~~g~  242 (384)
                                ....+|.|+.++|--+  .+.....++..|.
T Consensus       174 ----------ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~  204 (314)
T KOG2915|consen  174 ----------KSLKADAVFLDLPAPWEAIPHAAKILKDEGG  204 (314)
T ss_pred             ----------cccccceEEEcCCChhhhhhhhHHHhhhcCc
Confidence                      2357899999987522  2333344555453

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.96  E-value=5.5e-05  Score=73.39  Aligned_cols=83  Identities=19%  Similarity=0.300  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .+|.++|||||++|..|..|+++|.+|+|||..+ |.    ..+...++|+.+.+|.......            ...+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~p~------------~~~vD  272 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFRPP------------RKNVD  272 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCCCCEEEEeccCcccCCC------------CCCCC
Confidence            4789999999999999999999999999999543 32    3334457999999998876432            25789


Q ss_pred             eEeecc---CccccHHHHHHhcc
Q 016715          220 KVVANI---PFNISTDVIKQLLP  239 (384)
Q Consensus       220 ~Vv~Nl---Py~i~~~il~~L~~  239 (384)
                      .+++++   |..+..-+..|+..
T Consensus       273 wvVcDmve~P~rva~lm~~Wl~~  295 (357)
T PRK11760        273 WLVCDMVEKPARVAELMAQWLVN  295 (357)
T ss_pred             EEEEecccCHHHHHHHHHHHHhc
Confidence            999985   44555444445443

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.93  E-value=3.3e-05  Score=73.86  Aligned_cols=93  Identities=22%  Similarity=0.293  Sum_probs=65.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~  197 (384)
                      |+-.......+.+..   .+++||++.|=||.++...+..|+ +|++||.|..+++.+++++..+    .+++++.+|+.
T Consensus       108 FlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf  184 (286)
T PF10672_consen  108 FLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF  184 (286)
T ss_dssp             -GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred             cHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence            444444444444432   578999999999999999888887 7999999999999999998743    37899999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +.--.-         .....||+||.+||-
T Consensus       185 ~~l~~~---------~~~~~fD~IIlDPPs  205 (286)
T PF10672_consen  185 KFLKRL---------KKGGRFDLIILDPPS  205 (286)
T ss_dssp             HHHHHH---------HHTT-EEEEEE--SS
T ss_pred             HHHHHH---------hcCCCCCEEEECCCC
Confidence            743210         123689999999985

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02823 spermine synthase

Probab=97.91  E-value=4.7e-05  Score=74.60  Aligned_cols=74  Identities=19%  Similarity=0.315  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      ..++||.||+|.|.+++.+++.  ..+|++||+|+.+++.+++.+..      .++++++.+|+.++-..          
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----------  172 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----------  172 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----------
Confidence            4568999999999999998886  34899999999999999998742      36899999999885321          


Q ss_pred             ccCCCcceEeecc
Q 016715          213 KSSSGFAKVVANI  225 (384)
Q Consensus       213 ~~~~~~d~Vv~Nl  225 (384)
                       ..+.||+|+.++
T Consensus       173 -~~~~yDvIi~D~  184 (336)
T PLN02823        173 -RDEKFDVIIGDL  184 (336)
T ss_pred             -CCCCccEEEecC
Confidence             236799999885

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.91  E-value=4.4e-05  Score=67.78  Aligned_cols=80  Identities=21%  Similarity=0.319  Sum_probs=49.9

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEccccccchhhhhhhHHhh
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-----~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ...+.+|||+|||+|..+..++..  +.+|+..|.++ .++.++.++..+     +++++..-|..+-...    +..  
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~----~~~--  115 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDS----DLL--  115 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHH----HHH--
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccc----ccc--
Confidence            346789999999999999999998  66999999999 999999988653     3566666555431111    111  


Q ss_pred             hccCCCcceEee-ccCc
Q 016715          212 RKSSSGFAKVVA-NIPF  227 (384)
Q Consensus       212 ~~~~~~~d~Vv~-NlPy  227 (384)
                        ....||+|++ +.-|
T Consensus       116 --~~~~~D~IlasDv~Y  130 (173)
T PF10294_consen  116 --EPHSFDVILASDVLY  130 (173)
T ss_dssp             --S-SSBSEEEEES--S
T ss_pred             --ccccCCEEEEecccc
Confidence              2357898876 4555

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.88  E-value=8e-05  Score=71.75  Aligned_cols=98  Identities=11%  Similarity=0.366  Sum_probs=79.0

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccc
Q 016715          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVK  198 (384)
Q Consensus       122 ~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~  198 (384)
                      ||..-|-+++.+++.+.+.+++.++|.=+|.|..|..+++.  ..+|+|+|.|+.+++.+++++... ++++++++++.+
T Consensus         1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            45567788999999999999999999999999999999986  369999999999999999988654 489999999988


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      +...      ... .....+|.|+.|+-
T Consensus        81 l~~~------l~~-~~~~~vDgIl~DLG  101 (305)
T TIGR00006        81 FFEH------LDE-LLVTKIDGILVDLG  101 (305)
T ss_pred             HHHH------HHh-cCCCcccEEEEecc
Confidence            6521      110 11245888888763

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.87  E-value=7.1e-05  Score=74.40  Aligned_cols=81  Identities=12%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             CEEEEEcCcchHHHHHHHHc--C-CcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          143 DIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~-~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      -+|||..||+|..+..++..  | .+|+++|+++..++.++++++.++  +++++++|+..+...           ....
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-----------~~~~  114 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY-----------RNRK  114 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-----------hCCC
Confidence            48999999999999999987  4 489999999999999999987543  689999998876321           1246


Q ss_pred             cceEeeccCccccHHHHH
Q 016715          218 FAKVVANIPFNISTDVIK  235 (384)
Q Consensus       218 ~d~Vv~NlPy~i~~~il~  235 (384)
                      ||+|+.++ |....+++.
T Consensus       115 fDvIdlDP-fGs~~~fld  131 (374)
T TIGR00308       115 FHVIDIDP-FGTPAPFVD  131 (374)
T ss_pred             CCEEEeCC-CCCcHHHHH
Confidence            99999987 665555554

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.86  E-value=3e-05  Score=80.27  Aligned_cols=77  Identities=16%  Similarity=0.122  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+..+||||||.|.++..+|..  ...++|||+....+..+......  ..|+.++.+|+..+..      .+    ..+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------~~----~~~  416 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------DL----PNN  416 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------hc----Ccc
Confidence            4679999999999999999998  45899999999988887776543  3589999888654321      11    125


Q ss_pred             CcceEeeccCc
Q 016715          217 GFAKVVANIPF  227 (384)
Q Consensus       217 ~~d~Vv~NlPy  227 (384)
                      ..|.|+.|+|=
T Consensus       417 sv~~i~i~FPD  427 (506)
T PRK01544        417 SLDGIYILFPD  427 (506)
T ss_pred             cccEEEEECCC
Confidence            68999999874

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.80  E-value=3.7e-05  Score=69.60  Aligned_cols=107  Identities=16%  Similarity=0.228  Sum_probs=79.0

Q ss_pred             CCcccCCHHHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcc
Q 016715          120 GQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQED  195 (384)
Q Consensus       120 gq~fl~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD  195 (384)
                      ||-..+.+.+...|+...... ....|+|..||.|.-|...+.++..|++||+|+--++-|+.+++-.   ++|.+++||
T Consensus        72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD  151 (263)
T KOG2730|consen   72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD  151 (263)
T ss_pred             ceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence            343446677777776655322 5578999999999999999999999999999999999999998743   389999999


Q ss_pred             ccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHH
Q 016715          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI  234 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il  234 (384)
                      ++++--...+        .....|.|+..+|+.-++-..
T Consensus       152 ~ld~~~~lq~--------~K~~~~~vf~sppwggp~y~~  182 (263)
T KOG2730|consen  152 FLDLASKLKA--------DKIKYDCVFLSPPWGGPSYLR  182 (263)
T ss_pred             HHHHHHHHhh--------hhheeeeeecCCCCCCcchhh
Confidence            9886322110        123467788888876655443

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.75  E-value=0.00011  Score=62.90  Aligned_cols=59  Identities=24%  Similarity=0.445  Sum_probs=46.0

Q ss_pred             CCCCEEEEEcCcchHHHHHHHH-----c-CCcEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEccccc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLN-----A-GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVK  198 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~-----~-~~~V~avE~d~~~~~~a~~~~~~~-----~~v~~~~gD~~~  198 (384)
                      .+...|+|+|||.|+++..|+.     . +.+|++||.++..++.+..+....     .++++..++..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            4678999999999999999999     4 679999999999998888775421     245555555443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.72  E-value=0.00011  Score=75.00  Aligned_cols=90  Identities=14%  Similarity=0.130  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHh--cCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715          126 NSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (384)
Q Consensus       126 ~~~~~~~il~~l--~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~  198 (384)
                      ++......+..+  ++.++++|||++||+|.=|..++..   ...|+|+|+++.-+..+++++...  .|+.+.+.|+..
T Consensus        96 Qd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~  175 (470)
T PRK11933         96 QEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRV  175 (470)
T ss_pred             ECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhh
Confidence            333344444555  6789999999999999999999986   248999999999999999998754  488999999876


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      +...           ....||.|+.+.|
T Consensus       176 ~~~~-----------~~~~fD~ILvDaP  192 (470)
T PRK11933        176 FGAA-----------LPETFDAILLDAP  192 (470)
T ss_pred             hhhh-----------chhhcCeEEEcCC
Confidence            5321           1246899998877

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.71  E-value=3.9e-05  Score=73.60  Aligned_cols=115  Identities=27%  Similarity=0.371  Sum_probs=87.8

Q ss_pred             HHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHH-------HH
Q 016715          108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL-------VR  180 (384)
Q Consensus       108 l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~-------a~  180 (384)
                      +.+..++.+...|- .-.|+++---+++.+...+|+.|+|-..|||.+....+..|+.|+|.|||-.++..       .+
T Consensus       176 i~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~  254 (421)
T KOG2671|consen  176 IEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIK  254 (421)
T ss_pred             hhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchh
Confidence            44445555555554 56678877778888889999999999999999999999999999999999998873       23


Q ss_pred             HHhcCCC----CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHH
Q 016715          181 ERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI  234 (384)
Q Consensus       181 ~~~~~~~----~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il  234 (384)
                      .+++.++    -+.++.+|+.+-++..           .-.||.||+++||.+-...-
T Consensus       255 aNFkQYg~~~~fldvl~~D~sn~~~rs-----------n~~fDaIvcDPPYGVRe~~r  301 (421)
T KOG2671|consen  255 ANFKQYGSSSQFLDVLTADFSNPPLRS-----------NLKFDAIVCDPPYGVREGAR  301 (421)
T ss_pred             HhHHHhCCcchhhheeeecccCcchhh-----------cceeeEEEeCCCcchhhhhh
Confidence            4444332    3567778887766542           35799999999998876554

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.71  E-value=6.2e-05  Score=69.17  Aligned_cols=75  Identities=11%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             EEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      .++|+|||+|..++.++..-.+|+|+|+++.|+..|++.....   -...+...+..++  ..          ..++.|.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L--~g----------~e~SVDl  103 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL--LG----------GEESVDL  103 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc--cC----------CCcceee
Confidence            8999999999888888888789999999999999988764211   1222322232222  11          1367899


Q ss_pred             EeeccCcccc
Q 016715          221 VVANIPFNIS  230 (384)
Q Consensus       221 Vv~NlPy~i~  230 (384)
                      |++.-.+|+.
T Consensus       104 I~~Aqa~HWF  113 (261)
T KOG3010|consen  104 ITAAQAVHWF  113 (261)
T ss_pred             ehhhhhHHhh
Confidence            8876555443

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.65  E-value=0.00011  Score=62.42  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=46.1

Q ss_pred             EEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715          144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~  198 (384)
                      .+||||||.|..+..++..+.  +|+++|.++.+++.+++++..+  +++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999998854  6999999999999999987643  467877766554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.59  E-value=0.00034  Score=72.11  Aligned_cols=106  Identities=13%  Similarity=0.199  Sum_probs=81.7

Q ss_pred             CcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHhcCC--
Q 016715          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASI--  186 (384)
Q Consensus       115 ~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~avE~d~~~~~~a~~~~~~~--  186 (384)
                      ..+..|| |.++..+.+-|++.+.+.+..+|+|.-||+|.+-....+.    .  ...+|.|+++.....++.++.-.  
T Consensus       161 ~~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi  239 (489)
T COG0286         161 EGKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI  239 (489)
T ss_pred             cCCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC
Confidence            3455688 8999999999999999888889999999999887666553    1  46899999999999999887532  


Q ss_pred             C-CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          187 D-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       187 ~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      + ++.+.++|.+.-+....-       .....||.|++|+||+
T Consensus       240 ~~~~~i~~~dtl~~~~~~~~-------~~~~~~D~viaNPPf~  275 (489)
T COG0286         240 EGDANIRHGDTLSNPKHDDK-------DDKGKFDFVIANPPFS  275 (489)
T ss_pred             CccccccccccccCCccccc-------CCccceeEEEeCCCCC
Confidence            2 467778887776543200       0235699999999997

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00041  Score=63.86  Aligned_cols=89  Identities=21%  Similarity=0.312  Sum_probs=61.5

Q ss_pred             HHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEE-ccccccchhhhhh
Q 016715          130 NDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQ-EDFVKCHIRSHML  206 (384)
Q Consensus       130 ~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~-gD~~~~~~~~~~~  206 (384)
                      +..+++...+. ++..+||||+-||.+|..++++|+ +|+|||.....+..   .+...+++.++. .|+..+...+   
T Consensus        67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~rV~~~E~tN~r~l~~~~---  140 (245)
T COG1189          67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDPRVIVLERTNVRYLTPED---  140 (245)
T ss_pred             HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCCcEEEEecCChhhCCHHH---
Confidence            44556666654 688999999999999999999976 89999987654432   333446665554 3555554433   


Q ss_pred             hHHhhhccCCCcceEeeccCccccH
Q 016715          207 SLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                             -.+.+|.++++..|--..
T Consensus       141 -------~~~~~d~~v~DvSFISL~  158 (245)
T COG1189         141 -------FTEKPDLIVIDVSFISLK  158 (245)
T ss_pred             -------cccCCCeEEEEeehhhHH
Confidence                   124678999998874333

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.47  E-value=0.00015  Score=66.13  Aligned_cols=93  Identities=13%  Similarity=0.213  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      ....++|||||-|++...|...+. +++-+|.+-.|++.++..-...-.+....+|-+.+++.+            +.+|
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~e------------ns~D  139 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKE------------NSVD  139 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccc------------cchh
Confidence            345799999999999999998865 899999999999998865321114556678888888754            7899


Q ss_pred             eEeeccCccccHHH-------HHHhcccCCCee
Q 016715          220 KVVANIPFNISTDV-------IKQLLPMGDIFS  245 (384)
Q Consensus       220 ~Vv~NlPy~i~~~i-------l~~L~~~g~~~~  245 (384)
                      +|++.+..+|..++       -..|++.|.++.
T Consensus       140 LiisSlslHW~NdLPg~m~~ck~~lKPDg~Fia  172 (325)
T KOG2940|consen  140 LIISSLSLHWTNDLPGSMIQCKLALKPDGLFIA  172 (325)
T ss_pred             hhhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence            99998888776543       234555555443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.46  E-value=0.0006  Score=65.17  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=66.2

Q ss_pred             HHHHHHHHhc----CCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccc
Q 016715          129 INDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDF  196 (384)
Q Consensus       129 ~~~~il~~l~----~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~  196 (384)
                      ....++.+..    .++ ++||-||-|.|..++++++..  .+++.||+|+..++.+++.+..      .++++++.+|+
T Consensus        61 ~yhEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg  139 (282)
T COG0421          61 IYHEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG  139 (282)
T ss_pred             HHHHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence            4444554443    233 599999999999999999985  5899999999999999998752      36899999999


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeecc
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      .++--.           ....||+||.+.
T Consensus       140 ~~~v~~-----------~~~~fDvIi~D~  157 (282)
T COG0421         140 VEFLRD-----------CEEKFDVIIVDS  157 (282)
T ss_pred             HHHHHh-----------CCCcCCEEEEcC
Confidence            886432           224799999874

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.41  E-value=0.00023  Score=65.50  Aligned_cols=45  Identities=24%  Similarity=0.389  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhcC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~~  185 (384)
                      .+..+|||||-+|.+|..+++. ++ .|+|+|||+.+++.|++++..
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            5678999999999999999997 55 799999999999999998764

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.39  E-value=0.00076  Score=63.38  Aligned_cols=76  Identities=21%  Similarity=0.325  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhc------CCCCeEEEEccccccchhhhhhhHHhhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      ..++||-||-|.|..+..+++..  .+|++||+|+.+++.+++.+.      ..++++++.+|+..+--.          
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----------  145 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----------  145 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----------
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----------
Confidence            56899999999999999999874  589999999999999998654      236999999999886432          


Q ss_pred             ccCC-CcceEeeccCc
Q 016715          213 KSSS-GFAKVVANIPF  227 (384)
Q Consensus       213 ~~~~-~~d~Vv~NlPy  227 (384)
                       ... .+|+|+.+++-
T Consensus       146 -~~~~~yDvIi~D~~d  160 (246)
T PF01564_consen  146 -TQEEKYDVIIVDLTD  160 (246)
T ss_dssp             -SSST-EEEEEEESSS
T ss_pred             -ccCCcccEEEEeCCC
Confidence             224 79999987643

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.38  E-value=0.00063  Score=60.76  Aligned_cols=88  Identities=19%  Similarity=0.333  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~  205 (384)
                      .+.+.+.++-+.-.|++|||.|+|+|-.+...+..|+ .|++.|+++.....++-|.+.++ ++.+.+.|..- +     
T Consensus        66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~-----  139 (218)
T COG3897          66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S-----  139 (218)
T ss_pred             HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C-----
Confidence            3445555555555789999999999999999999977 89999999999888888877665 77888888766 2     


Q ss_pred             hhHHhhhccCCCcceEe-eccCcccc
Q 016715          206 LSLFERRKSSSGFAKVV-ANIPFNIS  230 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv-~NlPy~i~  230 (384)
                               .+.+|+++ +++-|+.+
T Consensus       140 ---------~~~~Dl~LagDlfy~~~  156 (218)
T COG3897         140 ---------PPAFDLLLAGDLFYNHT  156 (218)
T ss_pred             ---------CcceeEEEeeceecCch
Confidence                     14677775 56766554

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.34  E-value=0.00029  Score=62.72  Aligned_cols=75  Identities=23%  Similarity=0.423  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .+.+|||+||++|..+..+++++   .+|+|+|+.+.         ...+++..+++|+.+....+.+...+.  .....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLP--ESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHG--TTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhcc--ccccC
Confidence            34899999999999999999997   69999998866         222478888899876543322222221  01257


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      +|+|+++..
T Consensus        92 ~dlv~~D~~  100 (181)
T PF01728_consen   92 FDLVLSDMA  100 (181)
T ss_dssp             ESEEEE---
T ss_pred             cceeccccc
Confidence            999999873

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.31  E-value=0.0015  Score=60.89  Aligned_cols=88  Identities=17%  Similarity=0.252  Sum_probs=62.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhH
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      ..+++.....+..+|+|||+|.|.++..+++.  +.+++.+|. |..++.+++    .++++++.||+. -++       
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f-~~~-------  156 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF-DPL-------  156 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT-TCC-------
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH-hhh-------
Confidence            34555566667789999999999999999987  568999998 888888887    469999999998 332       


Q ss_pred             HhhhccCCCcceEe-eccCccccHHHHHHhc
Q 016715          209 FERRKSSSGFAKVV-ANIPFNISTDVIKQLL  238 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv-~NlPy~i~~~il~~L~  238 (384)
                             +.+|+++ .++-.+++.+-...++
T Consensus       157 -------P~~D~~~l~~vLh~~~d~~~~~iL  180 (241)
T PF00891_consen  157 -------PVADVYLLRHVLHDWSDEDCVKIL  180 (241)
T ss_dssp             -------SSESEEEEESSGGGS-HHHHHHHH
T ss_pred             -------ccccceeeehhhhhcchHHHHHHH
Confidence                   2267765 5555566665555544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00536 speE spermidine synthase; Provisional

Probab=97.31  E-value=0.0022  Score=60.67  Aligned_cols=103  Identities=14%  Similarity=0.116  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc------CCCCeEEEEcccc
Q 016715          127 SEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFV  197 (384)
Q Consensus       127 ~~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~gD~~  197 (384)
                      +.+...++.+...   ...++||=||.|.|...+++++...+|+.||+|+.+++.+++.+.      .+++++++.. +.
T Consensus        55 EfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~  133 (262)
T PRK00536         55 LHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL  133 (262)
T ss_pred             hhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh
Confidence            4455566655432   345799999999999999999986699999999999999998543      2468888751 11


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCccc--cHHHHHHhcccCCCe
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGDIF  244 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L~~~g~~~  244 (384)
                           +         ...+.||+||.+..|..  -..+.+.|.++|-++
T Consensus       134 -----~---------~~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v  168 (262)
T PRK00536        134 -----D---------LDIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFI  168 (262)
T ss_pred             -----h---------ccCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEE
Confidence                 1         11257999999854422  234455666655443

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.27  E-value=0.00053  Score=63.13  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=53.9

Q ss_pred             CcccCCHHHHHHHHHHhcCC-CC--CEEEEEcCcchHHHHHHHHcC----CcEEEEeCCHHHHHHHHHHhcCCC-CeEEE
Q 016715          121 QHYMLNSEINDQLAAAAAVQ-EG--DIVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASID-QLKVL  192 (384)
Q Consensus       121 q~fl~~~~~~~~il~~l~~~-~~--~~VLEIG~G~G~lt~~La~~~----~~V~avE~d~~~~~~a~~~~~~~~-~v~~~  192 (384)
                      .+|..+.+.+.+=...+... ..  .+|||||||.|.....+++..    .+|+++|.++++++..+++..-.+ ++...
T Consensus        48 ~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~af  127 (264)
T KOG2361|consen   48 NRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAF  127 (264)
T ss_pred             ccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccc
Confidence            34666766665555444332 22  279999999999999999862    479999999999999998765322 44444


Q ss_pred             Eccccc
Q 016715          193 QEDFVK  198 (384)
Q Consensus       193 ~gD~~~  198 (384)
                      ..|+..
T Consensus       128 v~Dlt~  133 (264)
T KOG2361|consen  128 VWDLTS  133 (264)
T ss_pred             ceeccc
Confidence            444433

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.08  E-value=0.0053  Score=56.89  Aligned_cols=107  Identities=14%  Similarity=0.160  Sum_probs=59.8

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcC--CCCCEEEEEcCcchHHH-HHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-Ce
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASID-QL  189 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~--~~~~~VLEIG~G~G~lt-~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v  189 (384)
                      .|...+.|-|.+.+..+.+.+=.+.-  -.|++||=+|=+--..- ..+.....+|+.+|+|+++++..++..+..+ ++
T Consensus        15 ~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i   94 (243)
T PF01861_consen   15 EPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPI   94 (243)
T ss_dssp             ---GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--E
T ss_pred             CCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCce
Confidence            67788999888888887776655543  36889999986643332 2333346799999999999999998776433 69


Q ss_pred             EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       190 ~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      +.++.|+.+--.++          ..+.||+++.++||.+.
T Consensus        95 ~~~~~DlR~~LP~~----------~~~~fD~f~TDPPyT~~  125 (243)
T PF01861_consen   95 EAVHYDLRDPLPEE----------LRGKFDVFFTDPPYTPE  125 (243)
T ss_dssp             EEE---TTS---TT----------TSS-BSEEEE---SSHH
T ss_pred             EEEEecccccCCHH----------HhcCCCEEEeCCCCCHH
Confidence            99999987743332          23789999999999764

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK11524 putative methyltransferase; Provisional

Probab=97.07  E-value=0.0019  Score=61.90  Aligned_cols=59  Identities=20%  Similarity=0.277  Sum_probs=53.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~  184 (384)
                      .+..++++++.... .+|+.|||..||+|+.+.+..+.|.+.+|+|++++.++.+++++.
T Consensus       193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            45778888888776 578999999999999999999999999999999999999999975

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.06  E-value=0.0038  Score=56.99  Aligned_cols=55  Identities=25%  Similarity=0.378  Sum_probs=47.7

Q ss_pred             EEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc
Q 016715          145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (384)
Q Consensus       145 VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~  199 (384)
                      |.||||--|++...|.+.|.  +++++|+++.-++.|++++...   +++++..||.++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~   60 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV   60 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence            68999999999999999976  8999999999999999998753   4799999998874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.99  E-value=0.0022  Score=58.43  Aligned_cols=58  Identities=24%  Similarity=0.353  Sum_probs=47.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHH
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~  181 (384)
                      ...+..++++++.... .+|+.|||..||+|+.+.+..+.|.+.+|+|+++..++.|++
T Consensus       174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            4467889999998775 568999999999999999999999999999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.95  E-value=0.0046  Score=61.26  Aligned_cols=96  Identities=18%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC----CcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~----~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~  196 (384)
                      |..+..........+++.+|++|||..++.|.=|..+++..    ..|+|+|+|+.=+..+++++...+  |+.+++.|+
T Consensus       138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~  217 (355)
T COG0144         138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA  217 (355)
T ss_pred             EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence            33444444455567789999999999999999999999873    357999999999999999987543  788999988


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ...+-..         .....||.|+.+.|=
T Consensus       218 ~~~~~~~---------~~~~~fD~iLlDaPC  239 (355)
T COG0144         218 RRLAELL---------PGGEKFDRILLDAPC  239 (355)
T ss_pred             ccccccc---------cccCcCcEEEECCCC
Confidence            7654221         011359999988774

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.84  E-value=0.0033  Score=60.00  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=58.6

Q ss_pred             EEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEe
Q 016715          144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv  222 (384)
                      +|+|+.||.|.++..+.+.|.+ |.++|+|+.+++..+.+...   . ++++|+.++...+.          .+.+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---~-~~~~Di~~~~~~~~----------~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---K-LIEGDITKIDEKDF----------IPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---C-CccCccccCchhhc----------CCCCCEEE
Confidence            5899999999999999988875 67999999999999888642   2 67888888764321          25689999


Q ss_pred             eccCccccH
Q 016715          223 ANIPFNIST  231 (384)
Q Consensus       223 ~NlPy~i~~  231 (384)
                      +.+|-+-.+
T Consensus        68 ~gpPCq~fS   76 (275)
T cd00315          68 GGFPCQPFS   76 (275)
T ss_pred             eCCCChhhh
Confidence            999874433

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.82  E-value=0.0038  Score=57.87  Aligned_cols=85  Identities=21%  Similarity=0.350  Sum_probs=54.2

Q ss_pred             HHHHHhcCCCC--CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc---C--C------CCeEEEEccccc
Q 016715          132 QLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---S--I------DQLKVLQEDFVK  198 (384)
Q Consensus       132 ~il~~l~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~---~--~------~~v~~~~gD~~~  198 (384)
                      .|++..+++++  .+|||.=+|.|.-+..++..|++|+++|.++-+...++.-+.   .  .      .+++++++|..+
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~  143 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE  143 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence            46666666665  499999999999999999899999999999988777664322   1  1      279999999988


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +-..           ....+|+|..++-|
T Consensus       144 ~L~~-----------~~~s~DVVY~DPMF  161 (234)
T PF04445_consen  144 YLRQ-----------PDNSFDVVYFDPMF  161 (234)
T ss_dssp             HCCC-----------HSS--SEEEE--S-
T ss_pred             HHhh-----------cCCCCCEEEECCCC
Confidence            6431           13689999998766

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.79  E-value=0.0052  Score=58.95  Aligned_cols=91  Identities=21%  Similarity=0.289  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccch
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~  201 (384)
                      ..-....+..+.+.+++.|||..+|.|.=|..+++.   ...|+|.|+++.-+..++.++...  .++.+...|+.....
T Consensus        71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~  150 (283)
T PF01189_consen   71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP  150 (283)
T ss_dssp             HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc
Confidence            333344455678889999999999999999999987   248999999999999999887654  488888888887642


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCc
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ..          ....||.|+.+.|=
T Consensus       151 ~~----------~~~~fd~VlvDaPC  166 (283)
T PF01189_consen  151 KK----------PESKFDRVLVDAPC  166 (283)
T ss_dssp             HH----------HTTTEEEEEEECSC
T ss_pred             cc----------cccccchhhcCCCc
Confidence            21          12359999988875

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.77  E-value=0.0031  Score=60.89  Aligned_cols=94  Identities=13%  Similarity=0.256  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccch
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHI  201 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~  201 (384)
                      .-|-+++.+++.+.+.++...+|.=-|.|..|..+++.  +.+|+|+|.|+.+++.+++++... +++.++++++.++..
T Consensus         4 H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~   83 (310)
T PF01795_consen    4 HIPVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE   83 (310)
T ss_dssp             ---TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH
T ss_pred             eecccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH
Confidence            34567888999999999999999999999999999986  579999999999999999988754 589999999988753


Q ss_pred             hhhhhhHHhhhc-cCCCcceEeecc
Q 016715          202 RSHMLSLFERRK-SSSGFAKVVANI  225 (384)
Q Consensus       202 ~~~~~~~~~~~~-~~~~~d~Vv~Nl  225 (384)
                      ..      .. + ....+|.|+.++
T Consensus        84 ~l------~~-~~~~~~~dgiL~DL  101 (310)
T PF01795_consen   84 YL------KE-LNGINKVDGILFDL  101 (310)
T ss_dssp             HH------HH-TTTTS-EEEEEEE-
T ss_pred             HH------HH-ccCCCccCEEEEcc
Confidence            21      11 1 235678887765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.77  E-value=0.0035  Score=61.38  Aligned_cols=80  Identities=19%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC--------CC----CeEEEEccccccchhhhhhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS--------ID----QLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~--------~~----~v~~~~gD~~~~~~~~~~~~  207 (384)
                      ++.+|||+|||-|.-..--... -..++|+|++...++.|++++..        ..    ...++.+|.....+.+.+.+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            6789999999977655444444 56899999999999999999821        11    45678888876544332110


Q ss_pred             HHhhhccCCCcceEeeccC
Q 016715          208 LFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlP  226 (384)
                            ....||+|-+-+.
T Consensus       142 ------~~~~FDvVScQFa  154 (331)
T PF03291_consen  142 ------RSRKFDVVSCQFA  154 (331)
T ss_dssp             ------TTS-EEEEEEES-
T ss_pred             ------cCCCcceeehHHH
Confidence                  1247888866543

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.70  E-value=0.012  Score=56.19  Aligned_cols=79  Identities=13%  Similarity=0.307  Sum_probs=68.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVK  198 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~  198 (384)
                      +..-+-+++.+++.+.+.++...+|.--|.|..+.++++..   .+++|+|.|+.+++.|++++... +++.++++++.+
T Consensus         5 ~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275           5 FRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             CCccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            34456788999999999999999999999999999999873   57999999999999999998764 599999999887


Q ss_pred             cch
Q 016715          199 CHI  201 (384)
Q Consensus       199 ~~~  201 (384)
                      +..
T Consensus        85 l~~   87 (314)
T COG0275          85 LAE   87 (314)
T ss_pred             HHH
Confidence            653

>PRK13699 putative methylase; Provisional

Probab=96.69  E-value=0.0065  Score=56.38  Aligned_cols=60  Identities=22%  Similarity=0.193  Sum_probs=52.7

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~  184 (384)
                      ..+..+.+.++.... .+|+.|||..||+|+...+..+.|.+.+|+|+++...+.+.+++.
T Consensus       147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~  206 (227)
T PRK13699        147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA  206 (227)
T ss_pred             CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence            356788888887665 478999999999999999999999999999999999999998875

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.60  E-value=0.003  Score=55.22  Aligned_cols=49  Identities=8%  Similarity=0.177  Sum_probs=38.9

Q ss_pred             EEEeCCHHHHHHHHHHhcC-----CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          167 LAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       167 ~avE~d~~~~~~a~~~~~~-----~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +|+|++++|++.|+++...     ..+++++++|+.++++.+            +.||.|+++.-.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~------------~~fD~v~~~~~l   54 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD------------CEFDAVTMGYGL   54 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC------------CCeeEEEecchh
Confidence            4899999999999876531     237999999999998754            679999887544

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.59  E-value=0.012  Score=53.98  Aligned_cols=96  Identities=16%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~  196 (384)
                      ....+.....+...+....++++||||.=||+.+...|..   +.+|+++|+|+...+...+..+..   ..|.+++|++
T Consensus        55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a  134 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA  134 (237)
T ss_pred             eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence            4555666655555556666789999998888888877765   679999999999999987765432   3899999999


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeec
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                      .+.-...     ... ...+.||.+|-+
T Consensus       135 ~esLd~l-----~~~-~~~~tfDfaFvD  156 (237)
T KOG1663|consen  135 LESLDEL-----LAD-GESGTFDFAFVD  156 (237)
T ss_pred             hhhHHHH-----Hhc-CCCCceeEEEEc
Confidence            8753221     111 134679998865

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.58  E-value=0.013  Score=52.55  Aligned_cols=68  Identities=24%  Similarity=0.271  Sum_probs=51.3

Q ss_pred             EEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          144 IVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      +++|||+|.|.=+..|+=.  ..+++.+|....=+..++....  ..+|++++++++++..             ....||
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-------------~~~~fd  117 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE-------------YRESFD  117 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT-------------TTT-EE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc-------------cCCCcc
Confidence            8999999999988888765  5589999999987777766544  2358999999999821             236789


Q ss_pred             eEeec
Q 016715          220 KVVAN  224 (384)
Q Consensus       220 ~Vv~N  224 (384)
                      .|++=
T Consensus       118 ~v~aR  122 (184)
T PF02527_consen  118 VVTAR  122 (184)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99863

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.53  E-value=0.013  Score=57.17  Aligned_cols=67  Identities=16%  Similarity=0.332  Sum_probs=51.7

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHhc--CCCCeEE--EEcccccc
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA--SIDQLKV--LQEDFVKC  199 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avE~d~~~~~~a~~~~~--~~~~v~~--~~gD~~~~  199 (384)
                      ..|++.+.  ++..++|+|||+|.=|..|++.      ....++||+|..+++.+..++.  ..+.+++  ++||+.+.
T Consensus        68 ~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        68 SDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            34555443  5668999999999999887763      2469999999999999999887  3466666  88888664

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.50  E-value=0.0018  Score=58.38  Aligned_cols=74  Identities=18%  Similarity=0.197  Sum_probs=58.9

Q ss_pred             HhCCCCCcccCCCcccCCHHHHHHHHHHhcCC---CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Q 016715          109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       109 ~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~---~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~  182 (384)
                      .+..+..--.+|.-|+-+++--++++..-++.   ...++||+|+|.|..|..++..--+|+|.|.+..|...++..
T Consensus        77 s~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen   77 SQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             hhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence            33344444567888988888888887765433   346999999999999999998877899999999999998865

>PHA01634 hypothetical protein

Probab=96.42  E-value=0.0063  Score=50.69  Aligned_cols=45  Identities=24%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~  185 (384)
                      .+++|+|||++.|..+...+.+|+ +|+++|.++.+.+..+++++.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence            578999999999999999999987 799999999999999987753

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.41  E-value=0.012  Score=53.96  Aligned_cols=87  Identities=20%  Similarity=0.278  Sum_probs=61.7

Q ss_pred             CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +++++|||+|.|.=+..|+-.  ..+|+.+|....=+..++.....  .+|++++++.++++...             ..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-------------~~  134 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-------------KK  134 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-------------cc
Confidence            589999999999988887732  55799999988777666665443  35899999999997532             23


Q ss_pred             -cceEeec--cCccccHHHHHHhcccC
Q 016715          218 -FAKVVAN--IPFNISTDVIKQLLPMG  241 (384)
Q Consensus       218 -~d~Vv~N--lPy~i~~~il~~L~~~g  241 (384)
                       +|+|.+-  -+.+...++...|+..+
T Consensus       135 ~~D~vtsRAva~L~~l~e~~~pllk~~  161 (215)
T COG0357         135 QYDVVTSRAVASLNVLLELCLPLLKVG  161 (215)
T ss_pred             cCcEEEeehccchHHHHHHHHHhcccC
Confidence             8888763  23344445555555543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.37  E-value=0.011  Score=53.61  Aligned_cols=80  Identities=21%  Similarity=0.216  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCe-EEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQL-KVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v-~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+.+|||||||||..+.+++..  ...-.--|.++......+.....  .+|+ .-+.-|+.+-+++-..    ......
T Consensus        25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~----~~~~~~  100 (204)
T PF06080_consen   25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL----PAPLSP  100 (204)
T ss_pred             cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc----ccccCC
Confidence            3446999999999999999987  34666889998887666655432  2333 2233455544322100    000012


Q ss_pred             CCcceEeec
Q 016715          216 SGFAKVVAN  224 (384)
Q Consensus       216 ~~~d~Vv~N  224 (384)
                      ..+|.|++.
T Consensus       101 ~~~D~i~~~  109 (204)
T PF06080_consen  101 ESFDAIFCI  109 (204)
T ss_pred             CCcceeeeh
Confidence            478988863

The function of this family is unknown.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.28  E-value=0.018  Score=54.93  Aligned_cols=46  Identities=15%  Similarity=0.233  Sum_probs=37.4

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI  186 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~  186 (384)
                      ...+|||+|||+|+.+-++.+.   -.+++++|.++.|++.++..+...
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            4569999999999887766654   348999999999999988876543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.21  E-value=0.016  Score=52.60  Aligned_cols=76  Identities=20%  Similarity=0.341  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc-CC--cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA-GA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-~~--~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++..|+|+|+-+|..+..++++ +.  .|+|||+.|-         ...++|.++++|+.+-+..+.+...+    ...
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~~l~~~l----~~~  110 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLEKLLEAL----GGA  110 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHHHHHHHc----CCC
Confidence            47899999999999999999988 33  4999999753         23357999999999876544332222    123


Q ss_pred             CcceEeeccCcc
Q 016715          217 GFAKVVANIPFN  228 (384)
Q Consensus       217 ~~d~Vv~NlPy~  228 (384)
                      ..|+|++++.-+
T Consensus       111 ~~DvV~sD~ap~  122 (205)
T COG0293         111 PVDVVLSDMAPN  122 (205)
T ss_pred             CcceEEecCCCC
Confidence            469999886543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.14  E-value=0.014  Score=56.00  Aligned_cols=99  Identities=22%  Similarity=0.323  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----C----CeEEEEccccccchhhhhhhHHh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----D----QLKVLQEDFVKCHIRSHMLSLFE  210 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~----~v~~~~gD~~~~~~~~~~~~~~~  210 (384)
                      ++++.++|+|||-|.-...--+.|. +++|+||.+-.++.|+.++..-    .    .+.++.||-....+.+.+.    
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e----  191 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE----  191 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc----
Confidence            4678899999999887766666655 8999999999999999987531    1    4788999987765544321    


Q ss_pred             hhccCCCcceEeeccC--ccccH---------HHHHHhcccCCCe
Q 016715          211 RRKSSSGFAKVVANIP--FNIST---------DVIKQLLPMGDIF  244 (384)
Q Consensus       211 ~~~~~~~~d~Vv~NlP--y~i~~---------~il~~L~~~g~~~  244 (384)
                        ...+.||+|-+-+.  |...+         .+...|.++|.++
T Consensus       192 --~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI  234 (389)
T KOG1975|consen  192 --FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI  234 (389)
T ss_pred             --CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence              01234888866544  33332         2344666666443

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.09  E-value=0.018  Score=52.83  Aligned_cols=101  Identities=14%  Similarity=0.205  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhcC------CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcc
Q 016715          128 EINDQLAAAAAV------QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQED  195 (384)
Q Consensus       128 ~~~~~il~~l~~------~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~----~v~~~~gD  195 (384)
                      .++..+.+.+..      .++-++||||.|.-.+--.+-.+  |.+.+|-|+|+..++.|+..+..++    .+++....
T Consensus        59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk  138 (292)
T COG3129          59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK  138 (292)
T ss_pred             HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence            455566665532      24458999999866554444433  7899999999999999999887654    34544332


Q ss_pred             ccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHH
Q 016715          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~  235 (384)
                      =.+--+.+    +.   ...+.||...+|+||+-+.+-..
T Consensus       139 ~~~~if~g----ii---g~nE~yd~tlCNPPFh~s~~da~  171 (292)
T COG3129         139 DSDAIFNG----II---GKNERYDATLCNPPFHDSAADAR  171 (292)
T ss_pred             Cccccccc----cc---cccceeeeEecCCCcchhHHHHH
Confidence            11111111    11   11367999999999988865544

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.04  E-value=0.021  Score=55.72  Aligned_cols=77  Identities=21%  Similarity=0.298  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHh--c-------CCCCeEEEEccccccchhhhhhhH
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~--~-------~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      +...+||-+|-|.|-..+.+.+..  .+++-||.||+|++.++.+.  .       .+++++++..|+.++--.      
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~------  361 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT------  361 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh------
Confidence            345799999999999999999983  48999999999999998432  1       135899999998875432      


Q ss_pred             HhhhccCCCcceEeeccCc
Q 016715          209 FERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy  227 (384)
                           ..+.||.||-++|-
T Consensus       362 -----a~~~fD~vIVDl~D  375 (508)
T COG4262         362 -----AADMFDVVIVDLPD  375 (508)
T ss_pred             -----hcccccEEEEeCCC
Confidence                 23589999988764

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.04  E-value=0.019  Score=55.46  Aligned_cols=68  Identities=21%  Similarity=0.295  Sum_probs=54.1

Q ss_pred             EEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEe
Q 016715          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv  222 (384)
                      +++|+.||.|.++..+.+.|. -|.++|+|+.+++..+.++.     .+..+|+.+++..+.         . +..|+++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l---------~-~~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDL---------P-KDVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHH---------H-HT-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccc---------c-ccceEEE
Confidence            689999999999999999987 57799999999999998873     889999999876531         1 1589999


Q ss_pred             eccC
Q 016715          223 ANIP  226 (384)
Q Consensus       223 ~NlP  226 (384)
                      +.+|
T Consensus        67 ggpP   70 (335)
T PF00145_consen   67 GGPP   70 (335)
T ss_dssp             EE--
T ss_pred             eccC
Confidence            9876

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.03  E-value=0.038  Score=50.71  Aligned_cols=91  Identities=11%  Similarity=0.112  Sum_probs=61.6

Q ss_pred             HHHHHHHHH---hcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch
Q 016715          128 EINDQLAAA---AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (384)
Q Consensus       128 ~~~~~il~~---l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~  201 (384)
                      .+.+.|+.-   +.+.+|.+||-+|+.+|+.-..++.-   ...|+|||.+++..+.+-...+.-+|+--+.+|+.....
T Consensus        57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~  136 (229)
T PF01269_consen   57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEK  136 (229)
T ss_dssp             HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGG
T ss_pred             HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHH
Confidence            444555443   34678999999999999999999986   348999999998777666555444799999999986432


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCc
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      -.         +..+..|+|+++.+-
T Consensus       137 Y~---------~lv~~VDvI~~DVaQ  153 (229)
T PF01269_consen  137 YR---------MLVEMVDVIFQDVAQ  153 (229)
T ss_dssp             GT---------TTS--EEEEEEE-SS
T ss_pred             hh---------cccccccEEEecCCC
Confidence            21         123578999998764

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.92  E-value=0.19  Score=47.98  Aligned_cols=84  Identities=24%  Similarity=0.315  Sum_probs=48.0

Q ss_pred             CEEEEEcCcchHHHHHHHH-c---CCcEEEEeCCHHHHHHHHHHhcC----CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          143 DIVLEIGPGTGSLTNVLLN-A---GATVLAIEKDQHMVGLVRERFAS----IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~-~---~~~V~avE~d~~~~~~a~~~~~~----~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+|+=||||.=-+|..+.. .   +..|+++|+|+..++.+++....    ..+++++.+|+.+...+.           
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-----------  190 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-----------  190 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------------
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-----------
Confidence            4999999998777765554 3   45799999999999999887652    248999999998765321           


Q ss_pred             CCCcceEe-eccCc---cccHHHHHHhc
Q 016715          215 SSGFAKVV-ANIPF---NISTDVIKQLL  238 (384)
Q Consensus       215 ~~~~d~Vv-~NlPy---~i~~~il~~L~  238 (384)
                       ..+|+|+ +.+.-   .--.+++.++.
T Consensus       191 -~~~DvV~lAalVg~~~e~K~~Il~~l~  217 (276)
T PF03059_consen  191 -KEYDVVFLAALVGMDAEPKEEILEHLA  217 (276)
T ss_dssp             ----SEEEE-TT-S----SHHHHHHHHH
T ss_pred             -ccCCEEEEhhhcccccchHHHHHHHHH
Confidence             4678775 44433   12234555553

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=95.88  E-value=0.022  Score=52.07  Aligned_cols=72  Identities=14%  Similarity=0.119  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC-CCC-eEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS-IDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~-~~~-v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      ...++||+|||.|..|..++.. ..+|-.||..+.+++.|++.+.. .++ .++.+....++.+.            ...
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~------------~~~  122 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE------------EGK  122 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------------TT-
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC------------CCc
Confidence            3469999999999999877544 56899999999999999988764 223 45666666555432            257


Q ss_pred             cceEeec
Q 016715          218 FAKVVAN  224 (384)
Q Consensus       218 ~d~Vv~N  224 (384)
                      +|+|...
T Consensus       123 YDlIW~Q  129 (218)
T PF05891_consen  123 YDLIWIQ  129 (218)
T ss_dssp             EEEEEEE
T ss_pred             EeEEEeh
Confidence            8998764

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.84  E-value=0.014  Score=58.13  Aligned_cols=51  Identities=37%  Similarity=0.537  Sum_probs=43.5

Q ss_pred             EEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---CeEEEEc
Q 016715          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQE  194 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v~~~~g  194 (384)
                      .|||||+|||-++...+..|+ .|+|+|.-..|...|++....++   ++.++..
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk  123 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK  123 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence            699999999999998888876 79999999999999998876543   6777654

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.75  E-value=0.049  Score=44.43  Aligned_cols=53  Identities=32%  Similarity=0.506  Sum_probs=39.0

Q ss_pred             EEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCC--eEEEEccccc
Q 016715          145 VLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK  198 (384)
Q Consensus       145 VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~--v~~~~gD~~~  198 (384)
                      ++|+|||+|..+ .+....   ..++++|.++.++..++........  +.+..+|...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG  109 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence            999999999977 444442   4799999999999986555422111  6788888776

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.69  E-value=0.019  Score=55.90  Aligned_cols=67  Identities=21%  Similarity=0.267  Sum_probs=53.8

Q ss_pred             EEEEcCcchHHHHHHHHcCCcE-EEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715          145 VLEIGPGTGSLTNVLLNAGATV-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (384)
Q Consensus       145 VLEIG~G~G~lt~~La~~~~~V-~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~  223 (384)
                      |+|+.||.|.++.-+.+.|.++ .++|+|+.+++..+.++.   + .++++|+.++...+           .+..|++++
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~-~~~~~Di~~~~~~~-----------~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N-KVPFGDITKISPSD-----------IPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C-CCCccChhhhhhhh-----------CCCcCEEEe
Confidence            6899999999999999888875 589999999999888863   3 56678988876533           145788888


Q ss_pred             ccC
Q 016715          224 NIP  226 (384)
Q Consensus       224 NlP  226 (384)
                      .+|
T Consensus        66 g~P   68 (315)
T TIGR00675        66 GFP   68 (315)
T ss_pred             cCC
Confidence            876

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=95.60  E-value=0.056  Score=51.89  Aligned_cols=60  Identities=18%  Similarity=0.136  Sum_probs=41.5

Q ss_pred             ccCCHHHHHHHHHHhcCC-CCCEEEEEcCcchHHH----HHHHHc------CCcEEEEeCCHHHHHHHHHH
Q 016715          123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLT----NVLLNA------GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt----~~La~~------~~~V~avE~d~~~~~~a~~~  182 (384)
                      |..++...+.+.+.+... ..-+|+..||+||-=.    ..+.+.      ..+|+|+|+|+.+++.|++-
T Consensus        96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611         96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            666766666666554322 2359999999999533    333332      23799999999999999863

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.54  E-value=0.059  Score=49.29  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~  199 (384)
                      .+..+.||||--|+++.+|.+.+.  .+++.|+++.-++.|.+++..+   +.+++..+|.+..
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~   79 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV   79 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc
Confidence            445699999999999999999853  8999999999999999988754   3788888998654

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.51  E-value=0.028  Score=52.44  Aligned_cols=60  Identities=25%  Similarity=0.314  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCH  200 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~  200 (384)
                      ..++|+|||||.=-++......  ++.++|+|+|..+++.+...+... .+..+...|...-+
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~  167 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP  167 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence            4679999999999998876665  468999999999999998876533 46777777877654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.42  E-value=0.021  Score=58.06  Aligned_cols=56  Identities=25%  Similarity=0.394  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhcC--CCC--CEEEEEcCcchHHHHHHHHcCCcEEEE---eCCHHHHHHHHHH
Q 016715          127 SEINDQLAAAAAV--QEG--DIVLEIGPGTGSLTNVLLNAGATVLAI---EKDQHMVGLVRER  182 (384)
Q Consensus       127 ~~~~~~il~~l~~--~~~--~~VLEIG~G~G~lt~~La~~~~~V~av---E~d~~~~~~a~~~  182 (384)
                      ...++.|.+.+..  ..+  ..+||||||+|.++++|.+++..++.+   |..+..++.|.++
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR  161 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER  161 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc
Confidence            4667777777765  222  479999999999999999997654444   3444556666554

; GO: 0008168 methyltransferase activity

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=0.028  Score=48.11  Aligned_cols=77  Identities=14%  Similarity=0.252  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~  202 (384)
                      .+-++..+..+..++..+.+|+|+|.|..-...++.|. .-+|+|+++-++.+++-+.-.   .....+...|.-+.++.
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~  137 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR  137 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence            34456667777767767899999999999999999884 899999999999988765422   24678888888887765


Q ss_pred             h
Q 016715          203 S  203 (384)
Q Consensus       203 ~  203 (384)
                      +
T Consensus       138 d  138 (199)
T KOG4058|consen  138 D  138 (199)
T ss_pred             c
Confidence            3

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.30  E-value=0.14  Score=48.57  Aligned_cols=38  Identities=26%  Similarity=0.167  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHH
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL  178 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~  178 (384)
                      ...+||--|||.|.|+..++.+|..+.|.|.|--|+-.
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~   93 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA   93 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH
Confidence            35689999999999999999999999999999988644

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=95.20  E-value=0.049  Score=51.48  Aligned_cols=76  Identities=16%  Similarity=0.160  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHHhcCC-CCCEEEEEcCcchH--HHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCC--eEEEEccc
Q 016715          125 LNSEINDQLAAAAAVQ-EGDIVLEIGPGTGS--LTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDF  196 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~--lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~--v~~~~gD~  196 (384)
                      .+...+.+.+..+.-. .-...||||||.-+  .+..+++.   .++|+-||.|+-.+++++..+...++  ..++++|+
T Consensus        51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~  130 (267)
T PF04672_consen   51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADL  130 (267)
T ss_dssp             HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--T
T ss_pred             HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCC
Confidence            3445666667766555 34689999999643  35566654   67999999999999999999887766  89999999


Q ss_pred             cccc
Q 016715          197 VKCH  200 (384)
Q Consensus       197 ~~~~  200 (384)
                      .+..
T Consensus       131 r~p~  134 (267)
T PF04672_consen  131 RDPE  134 (267)
T ss_dssp             T-HH
T ss_pred             CCHH
Confidence            8753

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=94.87  E-value=0.043  Score=49.92  Aligned_cols=74  Identities=11%  Similarity=0.122  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhcCCC-CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          128 EINDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       128 ~~~~~il~~l~~~~-~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      +=++.|++++.-.+ +..|-|.|||.+.++..+. .+.+|...|+-..             |-.++.+|+.++|+++   
T Consensus        58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------------n~~Vtacdia~vPL~~---  120 (219)
T PF05148_consen   58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------------NPRVTACDIANVPLED---  120 (219)
T ss_dssp             -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------STTEEES-TTS-S--T---
T ss_pred             CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------------CCCEEEecCccCcCCC---
Confidence            34678888887554 4699999999999996653 4468999997521             2247789999999876   


Q ss_pred             hHHhhhccCCCcceEeeccCc
Q 016715          207 SLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                               +..|++|..+..
T Consensus       121 ---------~svDv~VfcLSL  132 (219)
T PF05148_consen  121 ---------ESVDVAVFCLSL  132 (219)
T ss_dssp             ---------T-EEEEEEES--
T ss_pred             ---------CceeEEEEEhhh
Confidence                     678999877654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=94.86  E-value=0.066  Score=47.74  Aligned_cols=75  Identities=16%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEc-cccccchhhhhhhHHhhhccC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~g-D~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++++|||+||.+|..+....++   ...|.|||+-         .+....++.++.+ |+.+......++...    ..
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~~Ga~~i~~~dvtdp~~~~ki~e~l----p~  134 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPPEGATIIQGNDVTDPETYRKIFEAL----PN  134 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCCCCcccccccccCCHHHHHHHHHhC----CC
Confidence            47899999999999999999887   3479999974         2222246777777 766644332222111    22


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      ...|+|++++.-
T Consensus       135 r~VdvVlSDMap  146 (232)
T KOG4589|consen  135 RPVDVVLSDMAP  146 (232)
T ss_pred             CcccEEEeccCC
Confidence            567899998643

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.62  E-value=0.1  Score=51.17  Aligned_cols=72  Identities=19%  Similarity=0.232  Sum_probs=57.2

Q ss_pred             CEEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC-Ccce
Q 016715          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS-GFAK  220 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~-~~d~  220 (384)
                      -+++|+.||.|.+..-+...|.+ +.++|+|+..++..+.+..   ...++.+|..++.....          .. .+|+
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~---~~~~~~~di~~~~~~~~----------~~~~~Dv   70 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP---HGDIILGDIKELDGEAL----------RKSDVDV   70 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC---CCceeechHhhcChhhc----------cccCCCE
Confidence            57999999999999999988875 6699999999999988874   25677788877665431          12 6899


Q ss_pred             EeeccCc
Q 016715          221 VVANIPF  227 (384)
Q Consensus       221 Vv~NlPy  227 (384)
                      +++.+|=
T Consensus        71 ligGpPC   77 (328)
T COG0270          71 LIGGPPC   77 (328)
T ss_pred             EEeCCCC
Confidence            9998874

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=94.50  E-value=0.06  Score=51.68  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=54.2

Q ss_pred             EEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       146 LEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      +|||.|.-.+-..+-.+  +...+++|+|+..++.|.++...++   .+.+++....+..+.+...+     .....||.
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-----~~e~~ydF  181 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-----ESEIIYDF  181 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-----CccceeeE
Confidence            78888877666555443  6689999999999999999887543   56777665544333221100     11245899


Q ss_pred             EeeccCcccc
Q 016715          221 VVANIPFNIS  230 (384)
Q Consensus       221 Vv~NlPy~i~  230 (384)
                      +.+|+||.-.
T Consensus       182 cMcNPPFfe~  191 (419)
T KOG2912|consen  182 CMCNPPFFEN  191 (419)
T ss_pred             EecCCchhhc
Confidence            9999999554

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.43  E-value=0.14  Score=46.27  Aligned_cols=90  Identities=13%  Similarity=0.190  Sum_probs=68.1

Q ss_pred             HHHHHHHHHh---cCCCCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchh
Q 016715          128 EINDQLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       128 ~~~~~il~~l---~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (384)
                      .+.+.|+.-+   .+.+|++||=+|+-+|+....++.- + ..++|||.+++....+-..+..-+|+--+.+|+-...--
T Consensus        60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y  139 (231)
T COG1889          60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKY  139 (231)
T ss_pred             HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHh
Confidence            4556666544   4678999999999999999999987 3 479999999998887777666557999999998764322


Q ss_pred             hhhhhHHhhhccCCCcceEeeccC
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      .         +-.+..|+|+.+..
T Consensus       140 ~---------~~Ve~VDviy~DVA  154 (231)
T COG1889         140 R---------HLVEKVDVIYQDVA  154 (231)
T ss_pred             h---------hhcccccEEEEecC
Confidence            1         12256888888754

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.21  E-value=0.3  Score=50.12  Aligned_cols=86  Identities=14%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh----hhHHhhh-ccC
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM----LSLFERR-KSS  215 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~----~~~~~~~-~~~  215 (384)
                      .-+++|+.||.|.++..+-..|.+ |.++|+|+.+.+-.+.++...+...++.+|+.++...+..    .+..... ...
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~  167 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHI  167 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccC
Confidence            348999999999999999888875 6799999999998888764334556677888887643110    0000000 012


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      +..|++++.+|=
T Consensus       168 p~~DvL~gGpPC  179 (467)
T PRK10458        168 PDHDVLLAGFPC  179 (467)
T ss_pred             CCCCEEEEcCCC
Confidence            457899988763

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=93.85  E-value=0.12  Score=47.15  Aligned_cols=45  Identities=22%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~  184 (384)
                      ..+-++.|-.||.|++.-.+.-.    -..|+|-|+|+++++.|++|+.
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            34458999999999998776543    2389999999999999987753

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.71  E-value=0.19  Score=49.50  Aligned_cols=42  Identities=33%  Similarity=0.476  Sum_probs=35.8

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~  181 (384)
                      .+-+.|+|+|+|.|+++..|+-. |..|+|||-|..+.+.|+.
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            34578999999999999999876 7799999999888776654

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=93.67  E-value=0.044  Score=54.52  Aligned_cols=62  Identities=13%  Similarity=0.240  Sum_probs=54.4

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---C-CeEEEEccccccc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---D-QLKVLQEDFVKCH  200 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~-~v~~~~gD~~~~~  200 (384)
                      .++|+.|.|+.||.|-+...++..++.|++-|.+++++++++.++..+   + +++++..|+.++-
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            357899999999999999999999999999999999999999998743   3 5899988886643

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.66  E-value=0.26  Score=48.41  Aligned_cols=64  Identities=19%  Similarity=0.314  Sum_probs=46.7

Q ss_pred             cccCCHHHHH--------HHHHHh---cCCCCCEEEEEcCcchHHHHHHHHc----------CCcEEEEeCCHHHHHHHH
Q 016715          122 HYMLNSEIND--------QLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVR  180 (384)
Q Consensus       122 ~fl~~~~~~~--------~il~~l---~~~~~~~VLEIG~G~G~lt~~La~~----------~~~V~avE~d~~~~~~a~  180 (384)
                      .|++.|++-.        .+++..   .....-.++|||+|.|.+..-+++.          ..++..||+|+++.+.-+
T Consensus        47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk  126 (370)
T COG1565          47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK  126 (370)
T ss_pred             CeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence            4888776543        233332   2223457999999999999887753          358999999999999888


Q ss_pred             HHhcC
Q 016715          181 ERFAS  185 (384)
Q Consensus       181 ~~~~~  185 (384)
                      ++++.
T Consensus       127 ~~L~~  131 (370)
T COG1565         127 ETLKA  131 (370)
T ss_pred             HHHhc
Confidence            88764

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.63  E-value=0.24  Score=46.49  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             CCEEEEEcCcchHHHHHHHHc----------CCcEEEEeCCHHHHHHHHHHhcC
Q 016715          142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~----------~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      .-+|+|+|+|+|.++.-+++.          ..+++.||+++.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            359999999999999988864          13799999999999988888764

; PDB: 4F3N_A 1ZKD_B.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=93.61  E-value=0.026  Score=53.73  Aligned_cols=59  Identities=25%  Similarity=0.399  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCcchHHHH-HHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcccccc
Q 016715          141 EGDIVLEIGPGTGSLTN-VLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~-~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~  199 (384)
                      .+..|+|+.+|.||+|. .+...|+ .|+|+|.+|..++.++.++..+.   +..+++||--..
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~  257 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP  257 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence            35789999999999999 7777776 79999999999999999886542   345566665444

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=93.49  E-value=0.097  Score=49.02  Aligned_cols=71  Identities=10%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             HHHHHHHHhcCCCC-CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          129 INDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       129 ~~~~il~~l~~~~~-~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      =++.|++++...++ ..|-|+|||-+-++.   ..-.+|+..|+-+             .|-+++.+|+.++|+++    
T Consensus       167 Pld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl~d----  226 (325)
T KOG3045|consen  167 PLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRNVPLED----  226 (325)
T ss_pred             hHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccCCcCcc----
Confidence            46778888876544 588999999988775   3345799988641             25568889999999876    


Q ss_pred             HHhhhccCCCcceEeeccCc
Q 016715          208 LFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy  227 (384)
                              ...|++|..+..
T Consensus       227 --------~svDvaV~CLSL  238 (325)
T KOG3045|consen  227 --------ESVDVAVFCLSL  238 (325)
T ss_pred             --------CcccEEEeeHhh
Confidence                    678888876654

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=92.92  E-value=0.37  Score=42.27  Aligned_cols=98  Identities=14%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             CCCcccCCHHHHHHHHHHhcC--CCCCEEEEEcCcchHHHHHHH-HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcc
Q 016715          119 LGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED  195 (384)
Q Consensus       119 ~gq~fl~~~~~~~~il~~l~~--~~~~~VLEIG~G~G~lt~~La-~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD  195 (384)
                      +.| |+-+++.++.+++.+.-  .++.+|+=|||=+-+....-. ..+.+++..|+|.++....       ++ +++.-|
T Consensus         2 lsQ-fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD   72 (162)
T PF10237_consen    2 LSQ-FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYD   72 (162)
T ss_pred             ccc-cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECC
Confidence            346 78888888888887754  456799999986555443331 1356899999998875432       13 455555


Q ss_pred             ccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHH
Q 016715          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI  234 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il  234 (384)
                      ..+..   .+...     ..+.+|+||.++|| ++.++.
T Consensus        73 ~~~p~---~~~~~-----l~~~~d~vv~DPPF-l~~ec~  102 (162)
T PF10237_consen   73 YNEPE---ELPEE-----LKGKFDVVVIDPPF-LSEECL  102 (162)
T ss_pred             CCChh---hhhhh-----cCCCceEEEECCCC-CCHHHH
Confidence            44321   11111     13689999999999 666664

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=92.73  E-value=0.1  Score=42.27  Aligned_cols=46  Identities=22%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhc----CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCC
Q 016715          127 SEINDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD  172 (384)
Q Consensus       127 ~~~~~~il~~l~----~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d  172 (384)
                      -.+++.++..-.    ..+...-+|||||.|-|...|.+.|..=.|+|.-
T Consensus        40 laIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   40 LAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             HHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            344455544332    1234578999999999999999999999999964

; GO: 0008168 methyltransferase activity

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=92.69  E-value=0.15  Score=46.33  Aligned_cols=85  Identities=15%  Similarity=0.117  Sum_probs=47.1

Q ss_pred             ccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc------CCcEEEEeCCHHHHHHH-HHHhcCCCCe
Q 016715          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLV-RERFASIDQL  189 (384)
Q Consensus       117 ~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avE~d~~~~~~a-~~~~~~~~~v  189 (384)
                      .|.|...+..|.-...+-+.+---+.+.|+|+|.=.|......|+.      .++|+|||+|.+..... .+...-.++|
T Consensus         8 ~w~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI   87 (206)
T PF04989_consen    8 SWLGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI   87 (206)
T ss_dssp             EETTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred             cCCCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence            4667666666665544444443224579999999888888766652      35999999975544322 2211112599


Q ss_pred             EEEEccccccch
Q 016715          190 KVLQEDFVKCHI  201 (384)
Q Consensus       190 ~~~~gD~~~~~~  201 (384)
                      ++++||..+...
T Consensus        88 ~~i~Gds~d~~~   99 (206)
T PF04989_consen   88 TFIQGDSIDPEI   99 (206)
T ss_dssp             EEEES-SSSTHH
T ss_pred             EEEECCCCCHHH
Confidence            999999887653

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=92.61  E-value=0.5  Score=49.09  Aligned_cols=101  Identities=24%  Similarity=0.374  Sum_probs=69.2

Q ss_pred             cCCCcccCCHHHHHHHHHHhcCC--CCCEEEEEcCcchHHHHHHHHc---C---CcEEEEeCCHHHHHHHHHHhc--CC-
Q 016715          118 SLGQHYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---G---ATVLAIEKDQHMVGLVRERFA--SI-  186 (384)
Q Consensus       118 ~~gq~fl~~~~~~~~il~~l~~~--~~~~VLEIG~G~G~lt~~La~~---~---~~V~avE~d~~~~~~a~~~~~--~~-  186 (384)
                      .-|+ |.+...++..+.+.+.+.  ++..|.|.-||+|.+.....+.   +   ..+++-|....+...++.+..  .. 
T Consensus       193 ~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~  271 (501)
T TIGR00497       193 SGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID  271 (501)
T ss_pred             cCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence            3455 778889998888877654  5678999999999987654431   2   368999999999999998742  11 


Q ss_pred             -CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          187 -DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       187 -~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                       +......+|-+.-+  +    +.    ....+|.|++|+||..
T Consensus       272 ~~t~~~~~~dtl~~~--d----~~----~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       272 YANFNIINADTLTTK--E----WE----NENGFEVVVSNPPYSI  305 (501)
T ss_pred             ccccCcccCCcCCCc--c----cc----ccccCCEEeecCCccc
Confidence             23344455544421  1    11    1245899999999954

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.57  E-value=0.62  Score=38.99  Aligned_cols=77  Identities=13%  Similarity=0.239  Sum_probs=44.7

Q ss_pred             CCEEEEEcCcch-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          142 GDIVLEIGPGTG-SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       142 ~~~VLEIG~G~G-~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      ..+|+|||-|.= ..+..|.+.|..|+++|+++.   .+.      .++.++.-|+.+-++.-           ....|+
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~------~g~~~v~DDif~P~l~i-----------Y~~a~l   73 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP------EGVNFVVDDIFNPNLEI-----------YEGADL   73 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--HHH-----------HTTEEE
T ss_pred             CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc------cCcceeeecccCCCHHH-----------hcCCcE
Confidence            459999999974 445566667999999999988   111      36778888988865431           145788


Q ss_pred             Eee-ccCccccHHHHHHhc
Q 016715          221 VVA-NIPFNISTDVIKQLL  238 (384)
Q Consensus       221 Vv~-NlPy~i~~~il~~L~  238 (384)
                      |.| ++|-.+..+++.--.
T Consensus        74 IYSiRPP~El~~~il~lA~   92 (127)
T PF03686_consen   74 IYSIRPPPELQPPILELAK   92 (127)
T ss_dssp             EEEES--TTSHHHHHHHHH
T ss_pred             EEEeCCChHHhHHHHHHHH
Confidence            876 788888887766433

; PDB: 2K4M_A.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.44  E-value=0.26  Score=46.67  Aligned_cols=106  Identities=11%  Similarity=0.179  Sum_probs=72.9

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--C
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--D  187 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l--~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~  187 (384)
                      .|.+.+.|.|.+..-.+.+++-.-  +.-.|+.|+-+|- .--.+.+++-.  ..+|..||+|++++....+.....  +
T Consensus       123 ~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~  201 (354)
T COG1568         123 EPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN  201 (354)
T ss_pred             CcchhcccccccccceeeeeeeeccccCcCCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc
Confidence            566788999998887776554322  2335778999982 22223333333  458999999999999888766543  4


Q ss_pred             CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      |++.+.-|..+.-..+          ....||+++.++|+.+.
T Consensus       202 ~ie~~~~Dlr~plpe~----------~~~kFDvfiTDPpeTi~  234 (354)
T COG1568         202 NIEAFVFDLRNPLPED----------LKRKFDVFITDPPETIK  234 (354)
T ss_pred             chhheeehhcccChHH----------HHhhCCeeecCchhhHH
Confidence            7888888877643322          12689999999998665

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=92.40  E-value=0.34  Score=48.38  Aligned_cols=85  Identities=14%  Similarity=0.212  Sum_probs=67.0

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhh
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .+-.+.+++|.+|||..+-+|.=|.++|..   -..|+|.|.+..-+..++.++...  .|..+.+.|..+++...    
T Consensus       233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~----  308 (460)
T KOG1122|consen  233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE----  308 (460)
T ss_pred             eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc----
Confidence            344567889999999999999999888876   347999999999999999887643  47888889998765332    


Q ss_pred             HHhhhccCCCcceEeeccCc
Q 016715          208 LFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy  227 (384)
                            -.+.||.|..+-|=
T Consensus       309 ------~~~~fDRVLLDAPC  322 (460)
T KOG1122|consen  309 ------FPGSFDRVLLDAPC  322 (460)
T ss_pred             ------cCcccceeeecCCC
Confidence                  12479999887774

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=91.83  E-value=0.17  Score=45.74  Aligned_cols=58  Identities=24%  Similarity=0.333  Sum_probs=45.9

Q ss_pred             CEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---------CCCeEEEEccccccc
Q 016715          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---------IDQLKVLQEDFVKCH  200 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---------~~~v~~~~gD~~~~~  200 (384)
                      -...|||||-|.+...|+..  ..-++|+||-....++.++++..         ..|+.+++.++..+.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l  130 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL  130 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc
Confidence            46899999999999999988  34688999998888888776531         247788888777653

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=91.66  E-value=1.3  Score=42.40  Aligned_cols=59  Identities=19%  Similarity=0.159  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-C---CcEEEEeCCHHHHHHHHHHhcCC--CCe-EEEEcccccc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-G---ATVLAIEKDQHMVGLVRERFASI--DQL-KVLQEDFVKC  199 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~---~~V~avE~d~~~~~~a~~~~~~~--~~v-~~~~gD~~~~  199 (384)
                      ..-+||||-||.|..-.-.+.. .   ..|...|.++..++..++.++..  .++ +|.++|+.+.
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            4459999999999987766654 2   47999999999999999887653  355 9999998874

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=91.64  E-value=0.94  Score=43.16  Aligned_cols=61  Identities=23%  Similarity=0.272  Sum_probs=53.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      ..+..+..+++.. ...+++.|||.-+|+|....+....+...+++|+++..++.+.+++..
T Consensus       206 ~~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         206 QKPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             CChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence            3456777788877 566899999999999999999999999999999999999999998764

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=91.62  E-value=1.2  Score=40.72  Aligned_cols=84  Identities=19%  Similarity=0.258  Sum_probs=59.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhc-CCCCeEEEEccccccchhhhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .....+.+. .+|.+||+||-|.|.....+.+... +-+-||.+++.++..+..-- ...||.++.|-..+..-.     
T Consensus        91 Mha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~-----  164 (271)
T KOG1709|consen   91 MHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT-----  164 (271)
T ss_pred             HHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc-----
Confidence            333444444 5688999999999999998888744 77889999999999887642 224898888866654211     


Q ss_pred             HHhhhccCCCcceEeec
Q 016715          208 LFERRKSSSGFAKVVAN  224 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~N  224 (384)
                      +     ..+.||-|+-+
T Consensus       165 L-----~d~~FDGI~yD  176 (271)
T KOG1709|consen  165 L-----PDKHFDGIYYD  176 (271)
T ss_pred             c-----cccCcceeEee
Confidence            1     12568888754

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=91.03  E-value=0.52  Score=46.02  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=47.9

Q ss_pred             CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc
Q 016715          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~  199 (384)
                      ...+|+|.|.|.++..+...-.+|-++|.|...+-.++..+.  ++|+.+.||..+-
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~  233 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD  233 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccccccc
Confidence            789999999999999999976689999999999988888775  4588888988764

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=90.91  E-value=0.16  Score=40.61  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=23.5

Q ss_pred             EEEcCcchHHHHHHHHc---C--CcEEEEeCCHH---HHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          146 LEIGPGTGSLTNVLLNA---G--ATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       146 LEIG~G~G~lt~~La~~---~--~~V~avE~d~~---~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      ||||+..|..|..+++.   +  .+++++|..+.   ..+.+++ ....++++++++|..+.-. .    +     ...+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~-~----~-----~~~~   69 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLP-S----L-----PDGP   69 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHH-H----H-----HH--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHH-H----c-----CCCC
Confidence            79999999999888864   2  27999999994   3334333 2223489999999976421 1    1     1257


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      +|.++-+-
T Consensus        70 ~dli~iDg   77 (106)
T PF13578_consen   70 IDLIFIDG   77 (106)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEECC
Confidence            88888664

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=90.42  E-value=1.9  Score=42.35  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=59.6

Q ss_pred             hcCCCCCEEEEEcCc-chHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcc-ccccchhhhhhhHHhhhc
Q 016715          137 AAVQEGDIVLEIGPG-TGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQED-FVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       137 l~~~~~~~VLEIG~G-~G~lt~~La~-~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD-~~~~~~~~~~~~~~~~~~  213 (384)
                      .+..+|++|+=+|+| .|.++..+++ .|++|+++|.+++-.+.|++.-+    -.++... .....  .          
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA----d~~i~~~~~~~~~--~----------  225 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA----DHVINSSDSDALE--A----------  225 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC----cEEEEcCCchhhH--H----------
Confidence            456789999988887 4677777777 49999999999999999887632    2344432 11111  1          


Q ss_pred             cCCCcceEeeccCccccHHHHHHhcccCCC
Q 016715          214 SSSGFAKVVANIPFNISTDVIKQLLPMGDI  243 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~  243 (384)
                      ..+.+|.|+...|..-..+.+..|..+|.+
T Consensus       226 ~~~~~d~ii~tv~~~~~~~~l~~l~~~G~~  255 (339)
T COG1064         226 VKEIADAIIDTVGPATLEPSLKALRRGGTL  255 (339)
T ss_pred             hHhhCcEEEECCChhhHHHHHHHHhcCCEE
Confidence            012388888776633344556666666654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=90.25  E-value=1.4  Score=44.05  Aligned_cols=92  Identities=20%  Similarity=0.293  Sum_probs=65.4

Q ss_pred             CEEEEEcCcc-hHHHHHH-HHcC-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          143 DIVLEIGPGT-GSLTNVL-LNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       143 ~~VLEIG~G~-G~lt~~L-a~~~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .+||=||||. |...+.. ++.+ .+|+..|.+.+-++.+.....  ++++.+.-|+.+.+--.   .++      ..+|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~---~li------~~~d   70 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALV---ALI------KDFD   70 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHH---HHH------hcCC
Confidence            4689999964 4444333 4445 699999999888888776643  37899999998875321   111      4569


Q ss_pred             eEeeccCccccHHHHHHhcccCCCee
Q 016715          220 KVVANIPFNISTDVIKQLLPMGDIFS  245 (384)
Q Consensus       220 ~Vv~NlPy~i~~~il~~L~~~g~~~~  245 (384)
                      +||+-+|++....+++...+.|--+.
T Consensus        71 ~VIn~~p~~~~~~i~ka~i~~gv~yv   96 (389)
T COG1748          71 LVINAAPPFVDLTILKACIKTGVDYV   96 (389)
T ss_pred             EEEEeCCchhhHHHHHHHHHhCCCEE
Confidence            99999999888888887777665443

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=90.20  E-value=0.57  Score=42.41  Aligned_cols=41  Identities=22%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCcchHHH----HHHHHc-----C--CcEEEEeCCHHHHHHHHH
Q 016715          141 EGDIVLEIGPGTGSLT----NVLLNA-----G--ATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt----~~La~~-----~--~~V~avE~d~~~~~~a~~  181 (384)
                      ..-+|+..||++|.=.    ..+.+.     +  .+++|.|+|+.+++.|++
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            3458999999999643    333341     2  389999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=89.77  E-value=0.89  Score=44.80  Aligned_cols=89  Identities=24%  Similarity=0.253  Sum_probs=62.3

Q ss_pred             HhcCCCCCEEEEEcCcchHHHHHHHHcCC------cEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhh
Q 016715          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGA------TVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~~------~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .++++++++|||..+-+|.=|+.|.+...      .|++-|.|..-+..+......  .+++.+...|+...+-...- +
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~-~  228 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK-D  228 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-c
Confidence            45678999999999999999999988633      799999999888887776643  24666777676655422100 0


Q ss_pred             HHhhhccCCCcceEeeccCc
Q 016715          208 LFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +-.  ...-.||.|.++.|=
T Consensus       229 ~~~--~~~~~fDrVLvDVPC  246 (375)
T KOG2198|consen  229 GND--KEQLKFDRVLVDVPC  246 (375)
T ss_pred             Cch--hhhhhcceeEEeccc
Confidence            000  022469999988774

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=89.67  E-value=0.65  Score=46.14  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhh
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~  203 (384)
                      ..++..++|+|||.|....+++.. ++.+++++.++.-+.........   ...-.++.+|+.+.++++
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed  176 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED  176 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc
Confidence            456778999999999999999987 57999999998877766654332   123344888999998876

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=89.57  E-value=0.67  Score=45.98  Aligned_cols=111  Identities=12%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHH----------hcC-CCCeEE
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER----------FAS-IDQLKV  191 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~----------~~~-~~~v~~  191 (384)
                      +.++-+..+++.+.+.+++.-.|+|.|-|.+...++..+  .+=+|+|+.....+.+..+          +.. ...++.
T Consensus       176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~  255 (419)
T KOG3924|consen  176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET  255 (419)
T ss_pred             hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence            556777888999999999999999999999998888763  3677888765443333221          222 236889


Q ss_pred             EEccccccchhhhhhhHHhhhccCCCcceEeec-cCc------cccHHHHHHhcccCCCee
Q 016715          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF------NISTDVIKQLLPMGDIFS  245 (384)
Q Consensus       192 ~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy------~i~~~il~~L~~~g~~~~  245 (384)
                      ++|++..-.....+.         ...++|+.| ..|      .+. .++.+++.+-++++
T Consensus       256 i~gsf~~~~~v~eI~---------~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS  306 (419)
T KOG3924|consen  256 IHGSFLDPKRVTEIQ---------TEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIIS  306 (419)
T ss_pred             cccccCCHHHHHHHh---------hcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEec
Confidence            999999876554322         344566554 444      222 66677766655543

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=89.04  E-value=1  Score=45.83  Aligned_cols=60  Identities=17%  Similarity=0.319  Sum_probs=52.1

Q ss_pred             EEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHh-cCCCCeEEEEccccccchhh
Q 016715          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~-~~~~~v~~~~gD~~~~~~~~  203 (384)
                      ++|.+|||.-.++..+-+-|. .|+.+|+|+-.++...... ...+-.++...|+..+.+++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed  112 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED  112 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC
Confidence            899999999999999988876 7999999999998877765 34457899999999999877

>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=88.72  E-value=1.3  Score=36.08  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=41.4

Q ss_pred             CCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       334 rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      ..|.+..+|..++  +......++..+|++++.+..+|+.+|+..|.+.+++
T Consensus         9 ~~k~i~~aLt~IyGIG~~~A~~Ic~~lgi~~~~~~~~Ls~~~i~~l~~~i~~   60 (107)
T PF00416_consen    9 GNKPIYIALTKIYGIGRRKAKQICKKLGINPNKKVGDLSDEQIDKLRKIIEK   60 (107)
T ss_dssp             TSSBHHHHHTTSTTBCHHHHHHHHHHTTS-SSSBTTTSTHHHHHHHHHHHHT
T ss_pred             CCcchHhHHhhhhccCHHHHHHHHHHcCCChhhhcccCCHHHHHHHHHHHHH
Confidence            4678888888876  4555678899999999999999999999999988764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S13 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S13 is known to be involved in binding fMet-tRNA and, hence, in the initiation of translation. It is a basic protein of 115 to 177 amino-acid residues that contains thee helices and a beta-hairpin in the core of the protein, forming a helix-two turns-helix (H2TH) motif, and a non-globular C-terminal extension. This family of ribosomal proteins is present in prokaryotes, eukaryotes and archaea [, ].; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBN_M 2QBB_M 3I1M_M 3OFP_M 3OFX_M 3OFO_M 1VS5_M 3OAQ_M 2QAL_M 3J18_M ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=88.66  E-value=1  Score=36.39  Aligned_cols=47  Identities=23%  Similarity=0.384  Sum_probs=35.6

Q ss_pred             CcchHHHHHHHHc---C-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch
Q 016715          150 PGTGSLTNVLLNA---G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (384)
Q Consensus       150 ~G~G~lt~~La~~---~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~  201 (384)
                      ||.|.++..+++.   + .+|+.+|.|+..++.+++.     .+.++.||+.+...
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~   54 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEV   54 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhH
Confidence            6667788777764   4 4899999999998888765     47899999988653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=88.44  E-value=1  Score=41.85  Aligned_cols=82  Identities=15%  Similarity=0.119  Sum_probs=57.5

Q ss_pred             hcCCCCCEEEEEcCcchHHHHHHHHc-CC--cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715          137 AAVQEGDIVLEIGPGTGSLTNVLLNA-GA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~-~~--~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      +.++++.+||=+|+++|+.-...... |.  -|+|||.++..=..+-.-...-+|+.-+..|+....---         -
T Consensus       152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR---------m  222 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR---------M  222 (317)
T ss_pred             eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee---------e
Confidence            34678999999999999999888886 43  699999998655544433333368888888886532110         0


Q ss_pred             cCCCcceEeeccCc
Q 016715          214 SSSGFAKVVANIPF  227 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy  227 (384)
                      ..+..|+|+++++-
T Consensus       223 lVgmVDvIFaDvaq  236 (317)
T KOG1596|consen  223 LVGMVDVIFADVAQ  236 (317)
T ss_pred             eeeeEEEEeccCCC
Confidence            12567899998764

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=88.35  E-value=0.77  Score=43.03  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=48.9

Q ss_pred             EEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeecc
Q 016715          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       146 LEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      |..-+|+-.+++.+++...+.+.+|+.+.-.+.+++++....++++++.|+.+.-....    +    ....--+|+.++
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~all----P----P~~rRglVLIDP  133 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKALL----P----PPERRGLVLIDP  133 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH-----S-----TTS-EEEEE--
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhhC----C----CCCCCeEEEECC
Confidence            88999999999999988889999999999999999998876799999999988532210    0    112345788999


Q ss_pred             CccccHHH
Q 016715          226 PFNISTDV  233 (384)
Q Consensus       226 Py~i~~~i  233 (384)
                      ||...++.
T Consensus       134 pYE~~~dy  141 (245)
T PF04378_consen  134 PYEQKDDY  141 (245)
T ss_dssp             ---STTHH
T ss_pred             CCCCchHH
Confidence            99877654

; PDB: 2OO3_A.

>PRK12829 short chain dehydrogenase; Provisional

Probab=88.06  E-value=4.5  Score=37.33  Aligned_cols=83  Identities=16%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++.++|=+|++ |.++..+++    +|.+|++++.++...+.+.+..... ++.++.+|+.+..--....+...  ...
T Consensus         9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~   84 (264)
T PRK12829          9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAV--ERF   84 (264)
T ss_pred             cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            356789988875 666665554    4889999999987766655544322 56888899886542111111111  012


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|.||.|..
T Consensus        85 ~~~d~vi~~ag   95 (264)
T PRK12829         85 GGLDVLVNNAG   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            46788887653

>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents

Probab=87.47  E-value=1.3  Score=34.95  Aligned_cols=57  Identities=14%  Similarity=0.309  Sum_probs=42.6

Q ss_pred             HHHHhcCCCchHHHHHhh--hc-C--hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          327 VSSAFNGKRKMLRKSLQH--LC-T--SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       327 ~~~~F~~rrk~l~~~l~~--~~-~--~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      +...+.++++.++..|..  .+ +  .-...++|=.++|.|..++.+|+.+++.+|+..+..
T Consensus        15 ~~~~l~~~~~~ik~~LlDQ~~iaGiGNiy~~EiLf~a~i~P~~~~~~L~~~~~~~l~~~~~~   76 (92)
T PF06831_consen   15 FAERLRKRRRPIKAALLDQSVIAGIGNIYADEILFRAGIHPERPASSLSEEELRRLHEAIKR   76 (92)
T ss_dssp             HHHHHHTCCSBHHHHHHCTTTSTT--HHHHHHHHHHTTB-TTSBGGGSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcchHHHHHhCCCccccCcHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence            445566789999998842  22 2  222378888999999999999999999999987654

Most damage to bases in DNA is repaired by the base excision repair pathway []. These enzymes are primarily from bacteria, and have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC). Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines [, ]. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above (3.2.2 from EC, 4.2.99.18 from EC), but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine []. These protein contains three structural domains: an N-terminal catalytic core domain, a central helix-two turn-helix (H2TH) module and a C-terminal zinc finger []. The N-terminal catalytic domain and the C-terminal zinc finger straddle the DNA with the long axis of the protein oriented roughly orthogonal to the helical axis of the DNA. Residues that contact DNA are located in the catalytic domain and in a beta-hairpin loop formed by the zinc finger []. This entry represents the central domain containing the DNA-binding helix-two turn-helix domain [].; GO: 0003684 damaged DNA binding, 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0008270 zinc ion binding, 0016799 hydrolase activity, hydrolyzing N-glycosyl compounds, 0006289 nucleotide-excision repair; PDB: 3GQ3_A 3JR5_A 3SAT_A 3GPX_A 2F5Q_A 3SBJ_A 3U6S_A 3SAU_A 3SAR_A 2F5P_A ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=87.36  E-value=4.4  Score=40.27  Aligned_cols=48  Identities=29%  Similarity=0.403  Sum_probs=39.7

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      ......++.+||.+|||. |.++..+++. |. +|++++.++...+.+++.
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            344566788999999998 8888888886 65 599999999999988875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PLN02253 xanthoxin dehydrogenase

Probab=87.29  E-value=4  Score=38.29  Aligned_cols=82  Identities=13%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++ |.++..++    +.|++|+.++.++...+.+.+.+....++.++.+|..+...-+.+.+....  ..+
T Consensus        17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~--~~g   93 (280)
T PLN02253         17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVD--KFG   93 (280)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHH--HhC
Confidence            35678888854 55555544    458899999998776666555543334688899998875432222211111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        94 ~id~li~~A  102 (280)
T PLN02253         94 TLDIMVNNA  102 (280)
T ss_pred             CCCEEEECC
Confidence            678888764

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=87.19  E-value=0.78  Score=42.78  Aligned_cols=56  Identities=13%  Similarity=0.174  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF  183 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~  183 (384)
                      .++..|.+.+...+..+++|..||+|..+..+...+..|+.-|+++..+...+..+
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l   62 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL   62 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence            45677777776535789999999999999999888889999999999888777444

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=87.15  E-value=0.46  Score=45.17  Aligned_cols=87  Identities=17%  Similarity=0.273  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      .+..++|+|||.|-.+..=  -.+.+++.|+...++..++..    +...+..+|++++++.+            ..+|.
T Consensus        45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~~------------~s~d~  106 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFRE------------ESFDA  106 (293)
T ss_pred             CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC----CCceeehhhhhcCCCCC------------Ccccc
Confidence            4778999999999776321  234689999998888887754    22268899999999875            45565


Q ss_pred             EeeccC----------ccccHHHHHHhcccCCCee
Q 016715          221 VVANIP----------FNISTDVIKQLLPMGDIFS  245 (384)
Q Consensus       221 Vv~NlP----------y~i~~~il~~L~~~g~~~~  245 (384)
                      .++---          ..+..+.++.+.++|....
T Consensus       107 ~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  107 ALSIAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             chhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            543211          1223355667777776443

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=86.70  E-value=2.1  Score=40.53  Aligned_cols=64  Identities=14%  Similarity=0.251  Sum_probs=44.2

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHcC-------CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~-------~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (384)
                      +.+...++|.|||.|.|+..++..-       ..++.||....-. ..-..+...   +.++=+..|+.++++..
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~~   89 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLSK   89 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchhh
Confidence            3466799999999999999998752       3789999753211 222222222   35777888999988764

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=86.49  E-value=4.3  Score=33.45  Aligned_cols=73  Identities=19%  Similarity=0.305  Sum_probs=49.3

Q ss_pred             CEEEEEcCcc-hHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          143 DIVLEIGPGT-GSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       143 ~~VLEIG~G~-G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      .+|+|||-|- =..+..|+++|..|+++|+++.   .+.      ..++++..|..+-...-           ....|.|
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~------~g~~~v~DDitnP~~~i-----------Y~~A~lI   74 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP------EGLRFVVDDITNPNISI-----------YEGADLI   74 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc------ccceEEEccCCCccHHH-----------hhCccce
Confidence            4899999885 3445677888999999999977   111      36788888988765431           1346777


Q ss_pred             eec-cCccccHHHHH
Q 016715          222 VAN-IPFNISTDVIK  235 (384)
Q Consensus       222 v~N-lPy~i~~~il~  235 (384)
                      .|- +|-.+.+.+++
T Consensus        75 YSiRpppEl~~~ild   89 (129)
T COG1255          75 YSIRPPPELQSAILD   89 (129)
T ss_pred             eecCCCHHHHHHHHH
Confidence            764 45444444443

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.12  E-value=4.6  Score=37.56  Aligned_cols=84  Identities=13%  Similarity=0.078  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCcch-HHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTG-SLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G-~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++.+|=.|+++| .++.    .+++.|++|+.++.+++..+.+.+.....+.+.++.+|+.+..--..+.+....  ..
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~   86 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAE--EW   86 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHH--Hc
Confidence            4678999997652 4444    445568999999888654333333222223455777888765432222222221  12


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|++|.|.-
T Consensus        87 g~ld~lv~nAg   97 (258)
T PRK07533         87 GRLDFLLHSIA   97 (258)
T ss_pred             CCCCEEEEcCc
Confidence            56899998853

>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed

Probab=86.08  E-value=1.3  Score=38.29  Aligned_cols=62  Identities=15%  Similarity=0.117  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHh--cCCCchHHHHHhhhcC--hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          321 KSFFSMVSSAF--NGKRKMLRKSLQHLCT--SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       321 ~~~~~~~~~~F--~~rrk~l~~~l~~~~~--~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      ++|.++++.+-  ....|.+.-+|..+++  ......+++.+|++++.++.+||.+|...|...++
T Consensus         4 ~~~~~m~rI~~~~i~~~k~i~~aLt~IyGIG~~~a~~Ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~   69 (149)
T PRK04053          4 EEFKYIVRIAGTDLDGTKPVEYALTGIKGIGRRTARAIARKLGLDPNAKLGYLSDEEIEKIEEALE   69 (149)
T ss_pred             hhhhhhHhhcCccCCCCCEEeeeccccccccHHHHHHHHHHcCcCCCCccCcCCHHHHHHHHHHHH
Confidence            35666665332  3446777778877763  44557889999999999999999999999998875

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=86.01  E-value=1.7  Score=39.12  Aligned_cols=82  Identities=13%  Similarity=0.139  Sum_probs=59.4

Q ss_pred             ccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHhcCCCCeE
Q 016715          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLK  190 (384)
Q Consensus       117 ~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~avE~d~~~~~~a~~~~~~~~~v~  190 (384)
                      .|.|...+.++.-...+-+.+-....+.|+|+|.-.|..+...|..    |  .+|+++|+|-.-+..+...   .+++.
T Consensus        45 twmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~  121 (237)
T COG3510          45 TWMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDIL  121 (237)
T ss_pred             eEecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeE
Confidence            4668888888776666666554445679999999999888777763    5  5999999986554333222   37899


Q ss_pred             EEEccccccch
Q 016715          191 VLQEDFVKCHI  201 (384)
Q Consensus       191 ~~~gD~~~~~~  201 (384)
                      ++.|+..+...
T Consensus       122 f~egss~dpai  132 (237)
T COG3510         122 FIEGSSTDPAI  132 (237)
T ss_pred             EEeCCCCCHHH
Confidence            99999877543

>PTZ00134 40S ribosomal protein S18; Provisional

Probab=86.00  E-value=0.87  Score=39.52  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHh--cCCCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          321 KSFFSMVSSAF--NGKRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       321 ~~~~~~~~~~F--~~rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      ++|.++++.+-  ....|.+.-+|..++  +......+++.+|+++++|+.+||.+|..+|.+.+++
T Consensus         9 ~~~~~mvrI~~~~l~~~K~v~~aLt~I~GIG~~~A~~I~~~lgi~~~~~~~~Lt~~qi~~l~~~i~~   75 (154)
T PTZ00134          9 DDFQHILRILNTNVDGKRKVPYALTAIKGIGRRFAYLVCKKAGIDVTKRAGELTAEEIEKIVEIIAN   75 (154)
T ss_pred             hhhhhhhhccCccCCCCCEEEEeecccccccHHHHHHHHHHcCcCcCCCcccCCHHHHHHHHHHHhc
Confidence            36777776543  334677777777765  3444578899999999999999999999999988863

>PRK05867 short chain dehydrogenase; Provisional

Probab=85.98  E-value=5.3  Score=36.80  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+... .++..+.+|..+..--..+.+....  ..+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA--ELG   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH--HhC
Confidence            46789999976442   23344456899999999987776666555432 3677888888765422211111110  124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.+|.|..
T Consensus        86 ~id~lv~~ag   95 (253)
T PRK05867         86 GIDIAVCNAG   95 (253)
T ss_pred             CCCEEEECCC
Confidence            6788888754

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=85.88  E-value=2.1  Score=40.66  Aligned_cols=40  Identities=23%  Similarity=0.224  Sum_probs=30.4

Q ss_pred             CCEEEEEcCcchHH----HHHHHHc-------CCcEEEEeCCHHHHHHHHH
Q 016715          142 GDIVLEIGPGTGSL----TNVLLNA-------GATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       142 ~~~VLEIG~G~G~l----t~~La~~-------~~~V~avE~d~~~~~~a~~  181 (384)
                      .-+|+.+||+||-=    +..|.+.       ..+|+|.|+|...++.|+.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            45899999999953    3333333       2389999999999999874

>PRK07326 short chain dehydrogenase; Provisional

Probab=85.48  E-value=6  Score=35.85  Aligned_cols=58  Identities=16%  Similarity=0.192  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~  199 (384)
                      .+..||=+|+ +|.++..+++    .|.+|++++.++.-...+.+.+....++.++.+|+.+.
T Consensus         5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~   66 (237)
T PRK07326          5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDE   66 (237)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCH
Confidence            3568888884 5666666554    48899999998876665555443225688889998764

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.39  E-value=4.4  Score=38.95  Aligned_cols=94  Identities=18%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .|+.||==|.|.|-   ++..++++|++++..|+++...+.-.+.+...+.+....+|..+.+.-....+-+.  ...+.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk--~e~G~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK--KEVGD  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHH--HhcCC
Confidence            57789988888763   45566677999999999998887777766654578888899887653221111122  13467


Q ss_pred             cceEeecc---C----ccccHHHHHH
Q 016715          218 FAKVVANI---P----FNISTDVIKQ  236 (384)
Q Consensus       218 ~d~Vv~Nl---P----y~i~~~il~~  236 (384)
                      .+++|.|-   |    ++.+.+.+++
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k  140 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQK  140 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHH
Confidence            88888773   1    2555555554

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.38  E-value=2.1  Score=41.58  Aligned_cols=48  Identities=31%  Similarity=0.494  Sum_probs=40.6

Q ss_pred             HHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~  181 (384)
                      ....+.+.|.+||=+|+|+ |-+|...|+. |+ +|+.+|+++.-++.|++
T Consensus       162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            3445677899999999997 7788777776 65 89999999999999998

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=85.36  E-value=3.1  Score=42.12  Aligned_cols=65  Identities=22%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             ccCCCcccCCHHHHHHHHHHhcC-CCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715          117 KSLGQHYMLNSEINDQLAAAAAV-QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       117 ~~~gq~fl~~~~~~~~il~~l~~-~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~  181 (384)
                      ..|...|-+...+.+.++...+. .+|++|+=+|+|. |...+..++. |++|+.+|.++.-.+.|+.
T Consensus       176 ~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~  243 (413)
T cd00401         176 SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM  243 (413)
T ss_pred             ccccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence            34454555666778888887765 4789999999997 6666656554 8899999999887776654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=85.10  E-value=3.3  Score=38.78  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          128 EINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       128 ~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ..++..++.+. .+++.. |..-||+--+++.+.+...++.++|+.+.=...++.++....++++..+|.....-..+  
T Consensus        75 a~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~L--  151 (279)
T COG2961          75 AELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHL--  151 (279)
T ss_pred             HHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhC--
Confidence            44454444442 233333 89999999999999988889999999999999999999877799999999866432110  


Q ss_pred             hHHhhhccCCCcceEeeccCccccHHH
Q 016715          207 SLFERRKSSSGFAKVVANIPFNISTDV  233 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~~~i  233 (384)
                        +    ..+.--.|+.++||....+.
T Consensus       152 --P----P~erRglVLIDPPfE~~~eY  172 (279)
T COG2961         152 --P----PKERRGLVLIDPPFELKDEY  172 (279)
T ss_pred             --C----CCCcceEEEeCCCcccccHH
Confidence              0    11334678899999777644

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=85.05  E-value=1.8  Score=40.77  Aligned_cols=82  Identities=22%  Similarity=0.306  Sum_probs=58.7

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .+|....|+|+-.|.-|-.|.+++-.|++||-- .|.+.+    ...+.|+-...|..++...            ....|
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng-~ma~sL----~dtg~v~h~r~DGfk~~P~------------r~~id  272 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNG-PMAQSL----MDTGQVTHLREDGFKFRPT------------RSNID  272 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcceEEEEeccc-hhhhhh----hcccceeeeeccCcccccC------------CCCCc
Confidence            478899999999999999999999999999954 333333    2336888888898887642            24678


Q ss_pred             eEeecc---CccccHHHHHHhc
Q 016715          220 KVVANI---PFNISTDVIKQLL  238 (384)
Q Consensus       220 ~Vv~Nl---Py~i~~~il~~L~  238 (384)
                      ..|+++   |-.++.-+..||.
T Consensus       273 WmVCDmVEkP~rv~~li~~Wl~  294 (358)
T COG2933         273 WMVCDMVEKPARVAALIAKWLV  294 (358)
T ss_pred             eEEeehhcCcHHHHHHHHHHHH
Confidence            888875   4344433444443

>PRK07454 short chain dehydrogenase; Provisional

Probab=84.89  E-value=8.5  Score=35.04  Aligned_cols=83  Identities=10%  Similarity=0.030  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      ..+++|=.|+ +|.++..++    ++|.+|++++.++.-.+.+.+.... ..++.++.+|+.+...-....+....  ..
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~   81 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE--QF   81 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence            3467888885 455555444    4588999999988766555544432 24788899998875422211111111  12


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|.+|.|.-
T Consensus        82 ~~id~lv~~ag   92 (241)
T PRK07454         82 GCPDVLINNAG   92 (241)
T ss_pred             CCCCEEEECCC
Confidence            45788887653

>CHL00137 rps13 ribosomal protein S13; Validated

Probab=84.87  E-value=1.1  Score=37.46  Aligned_cols=48  Identities=17%  Similarity=0.239  Sum_probs=38.0

Q ss_pred             CchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          335 RKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       335 rk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      .|.+.-+|..++  +......+.+.+|++++.++.+|+.+|+..|.+.++
T Consensus        12 ~k~v~~aLt~i~GIG~~~A~~ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~   61 (122)
T CHL00137         12 NKRIEYALTYIYGIGLTSAKEILEKANIDPDIRTKDLTDEQISALREIIE   61 (122)
T ss_pred             CCEeeeeecccccccHHHHHHHHHHcCcCcCcCcccCCHHHHHHHHHHHH
Confidence            355556666665  344456788999999999999999999999998875

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=84.81  E-value=2.1  Score=44.12  Aligned_cols=85  Identities=18%  Similarity=0.314  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhcCCC---CCEEEEEcCcchHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHhc-CC-CCeEEEEccc
Q 016715          128 EINDQLAAAAAVQE---GDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDF  196 (384)
Q Consensus       128 ~~~~~il~~l~~~~---~~~VLEIG~G~G~lt~~La~~------~~~V~avE~d~~~~~~a~~~~~-~~-~~v~~~~gD~  196 (384)
                      .+...+++.....+   ...|.-+|+|-|-+.....+.      .-++++||.+|.++-.++.... .. ++|+++.+|.
T Consensus       351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM  430 (649)
T KOG0822|consen  351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM  430 (649)
T ss_pred             HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc
Confidence            44444444433222   236788899999998666543      3389999999999988876432 22 4899999999


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeec
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                      -+++.+.            ...|++|+-
T Consensus       431 R~w~ap~------------eq~DI~VSE  446 (649)
T KOG0822|consen  431 RKWNAPR------------EQADIIVSE  446 (649)
T ss_pred             cccCCch------------hhccchHHH
Confidence            9987542            356777754

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=84.69  E-value=0.66  Score=44.12  Aligned_cols=50  Identities=18%  Similarity=0.193  Sum_probs=38.3

Q ss_pred             HHHHHHHHHh--c-CCCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHH
Q 016715          128 EINDQLAAAA--A-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVG  177 (384)
Q Consensus       128 ~~~~~il~~l--~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~  177 (384)
                      ..+..+.+.+  . ...+++|||+|||+|.....+...+ ..+...|.+...++
T Consensus       100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            4445555443  2 2368899999999999999988887 58999999987774

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=84.55  E-value=6.9  Score=36.02  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|+ +|.++..+++    .|++|+.++.++.-.+.+.+.+... .++.++.+|+.+...-..+.+-..  ...
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   85 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE--AEI   85 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence            4678998885 5666655554    5889999999987666555555432 357888889877542221111111  122


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|.||.|..
T Consensus        86 ~~~d~li~~ag   96 (255)
T PRK07523         86 GPIDILVNNAG   96 (255)
T ss_pred             CCCCEEEECCC
Confidence            46788887753

>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]

Probab=84.53  E-value=0.99  Score=37.21  Aligned_cols=47  Identities=19%  Similarity=0.242  Sum_probs=36.7

Q ss_pred             chHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          336 KMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       336 k~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      |.+.-+|..++  +...-..+++++|+++++|+.+||.||...|-+.++
T Consensus        13 K~v~iALt~IyGIG~~~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~   61 (121)
T COG0099          13 KRVVIALTYIYGIGRRRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQ   61 (121)
T ss_pred             ceEeehhhhhccccHHHHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHH
Confidence            44444555554  344457889999999999999999999999988775

>PRK09072 short chain dehydrogenase; Provisional

Probab=84.52  E-value=8.2  Score=35.76  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      ++.++|=.|++.|.   ++..++++|++|++++.++.-.+.+...+....++.++.+|..+..--..+.+...   ..+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAR---EMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH---hcCC
Confidence            35678888866422   33445556899999999987776665554333478888999877543222221111   1246


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|.+|.|..
T Consensus        81 id~lv~~ag   89 (263)
T PRK09072         81 INVLINNAG   89 (263)
T ss_pred             CCEEEECCC
Confidence            788887743

>PRK05179 rpsM 30S ribosomal protein S13; Validated

Probab=84.44  E-value=0.94  Score=37.78  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             CchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          335 RKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       335 rk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      .|.+.-+|..++  +......+++.+|++++++..+|+.+|+..|.+.+++
T Consensus        12 ~k~v~~aL~~I~GIG~~~a~~i~~~lgi~~~~~~~~L~~~qi~~l~~~i~~   62 (122)
T PRK05179         12 NKRVVIALTYIYGIGRTRAKEILAAAGIDPDTRVKDLTDEELDKIREEIDK   62 (122)
T ss_pred             CcEEEeeecccccccHHHHHHHHHHhCcCcccccccCCHHHHHHHHHHHHh
Confidence            355556666665  3444567889999999999999999999999988763

>TIGR00275 flavoprotein, HI0933 family

Probab=84.16  E-value=3.2  Score=41.74  Aligned_cols=64  Identities=16%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHh-cCCCchHHHHHhhhcChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          320 TKSFFSMVSSAF-NGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       320 ~~~~~~~~~~~F-~~rrk~l~~~l~~~~~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      .+++...+...+ ..++|++++.|..+.+..-+..+++.++++++++..+|+.+|...|.+.+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~  331 (400)
T TIGR00275       267 EEELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKN  331 (400)
T ss_pred             HHHHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhC
Confidence            344544444333 4567899999998888888888999999999999999999999999988764

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.10  E-value=2.5  Score=42.34  Aligned_cols=58  Identities=17%  Similarity=0.223  Sum_probs=42.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~  184 (384)
                      .-||++-   .+.+++.++++||-|.+|.......|....++|+|||+++.....++-+++
T Consensus        21 WEDp~vD---~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   21 WEDPRVD---MEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             cCCcHHH---HHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence            3455553   445667899999999777656555666556799999999998887776554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK06949 short chain dehydrogenase; Provisional

Probab=84.01  E-value=7.7  Score=35.64  Aligned_cols=83  Identities=18%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.| |+|.++..+++    .|++|++++.+++-++.+...+.. ..++.++.+|+.+..--..+.....  ...
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   84 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAE--TEA   84 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--Hhc
Confidence            467888888 44555555544    488999999998877666655432 2468889999876432111111111  112


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|.+|.|..
T Consensus        85 ~~~d~li~~ag   95 (258)
T PRK06949         85 GTIDILVNNSG   95 (258)
T ss_pred             CCCCEEEECCC
Confidence            46788887754

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=83.93  E-value=7.5  Score=35.97  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=48.6

Q ss_pred             EEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          144 IVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      +||=.|++. .++..    +++.|++|+.++.++.-++.+.+.+...+++.++.+|..+...-..+.+...  ...+..|
T Consensus         2 ~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~--~~~g~id   78 (259)
T PRK08340          2 NVLVTASSR-GIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW--ELLGGID   78 (259)
T ss_pred             eEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH--HhcCCCC
Confidence            467777654 34444    4456899999999988776666555433467888899876432221111111  1125678


Q ss_pred             eEeeccC
Q 016715          220 KVVANIP  226 (384)
Q Consensus       220 ~Vv~NlP  226 (384)
                      ++|.|.-
T Consensus        79 ~li~naG   85 (259)
T PRK08340         79 ALVWNAG   85 (259)
T ss_pred             EEEECCC
Confidence            9887753

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=83.67  E-value=5  Score=37.03  Aligned_cols=71  Identities=21%  Similarity=0.260  Sum_probs=47.0

Q ss_pred             EEEEEcCcc--hHHHHHHHHcCCcEEEEeCCHHHHHHHHH-HhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          144 IVLEIGPGT--GSLTNVLLNAGATVLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       144 ~VLEIG~G~--G~lt~~La~~~~~V~avE~d~~~~~~a~~-~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      +++=||||.  +.++..|.+.|.+|++||.|++.++.... ..    ...++++|+.+...-..        .....+|.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~~~~L~~--------agi~~aD~   69 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGDATDEDVLEE--------AGIDDADA   69 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEecCCCHHHHHh--------cCCCcCCE
Confidence            567788885  44455666668999999999998877333 32    57889999987543210        12345777


Q ss_pred             EeeccC
Q 016715          221 VVANIP  226 (384)
Q Consensus       221 Vv~NlP  226 (384)
                      +++-..
T Consensus        70 vva~t~   75 (225)
T COG0569          70 VVAATG   75 (225)
T ss_pred             EEEeeC
Confidence            765443

>TIGR03631 bact_S13 30S ribosomal protein S13

Probab=83.52  E-value=1  Score=36.99  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             CchHHHHHhhhcC--hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          335 RKMLRKSLQHLCT--SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       335 rk~l~~~l~~~~~--~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      .|.+..+|..+++  ......+.+.+|+++++++.+|+.+|+..|.+.++
T Consensus        10 ~k~v~~aL~~i~GIG~~~a~~i~~~lgi~~~~~~~~L~~~qi~~l~~~l~   59 (113)
T TIGR03631        10 NKRVEIALTYIYGIGRTRARKILEKAGIDPDKRVKDLTEEELNAIREEIE   59 (113)
T ss_pred             CCEEeeeeeeeecccHHHHHHHHHHhCcCcccccccCCHHHHHHHHHHHH
Confidence            3555566666553  34456788899999999999999999999998874

This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=83.48  E-value=1.5  Score=39.49  Aligned_cols=39  Identities=31%  Similarity=0.486  Sum_probs=30.5

Q ss_pred             HHhcCCCCCEEEEEcCcchHHHHHHHHc-CC--cEEEEeCCH
Q 016715          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA--TVLAIEKDQ  173 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~--~V~avE~d~  173 (384)
                      ...+++++.+|+|+-+|.|+.|+.++.. |.  .|+++-.++
T Consensus        42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e   83 (238)
T COG4798          42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE   83 (238)
T ss_pred             EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence            3446678999999999999999999986 32  677765443

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=83.24  E-value=8.8  Score=35.14  Aligned_cols=81  Identities=16%  Similarity=0.223  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhh---hhhhHHhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS---HMLSLFER  211 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~---~~~~~~~~  211 (384)
                      ++++||=.|+ +|.++..++    +.|++|++++.++.-.+.+.+.+...  .++.++.+|....+..+   ....+.. 
T Consensus        11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-   88 (247)
T PRK08945         11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE-   88 (247)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH-
Confidence            5778999985 566665554    44889999999987665555444322  36778888886443221   1111111 


Q ss_pred             hccCCCcceEeecc
Q 016715          212 RKSSSGFAKVVANI  225 (384)
Q Consensus       212 ~~~~~~~d~Vv~Nl  225 (384)
                        ..+..|.||.|.
T Consensus        89 --~~~~id~vi~~A  100 (247)
T PRK08945         89 --QFGRLDGVLHNA  100 (247)
T ss_pred             --HhCCCCEEEECC
Confidence              124678888764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=82.88  E-value=3.6  Score=40.54  Aligned_cols=45  Identities=29%  Similarity=0.502  Sum_probs=37.5

Q ss_pred             CCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHh
Q 016715          139 VQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERF  183 (384)
Q Consensus       139 ~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~  183 (384)
                      ..++++|+=+|||+ |.++..+++. |+ +|+++|.++.-++.|++..
T Consensus       166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~  213 (350)
T COG1063         166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG  213 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence            34555999999997 8888888876 54 8999999999999999864

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.86  E-value=9.4  Score=34.77  Aligned_cols=81  Identities=12%  Similarity=0.161  Sum_probs=49.6

Q ss_pred             CCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh-hhHHhhhccCC
Q 016715          142 GDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~-~~~~~~~~~~~  216 (384)
                      +.+||=+|++ |.++.    .|+++|.+|++++.++.-.+.+...+....++.++.+|+.+...-... .....   ..+
T Consensus         5 ~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~   80 (251)
T PRK07231          5 GKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALE---RFG   80 (251)
T ss_pred             CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---HhC
Confidence            4578877764 44444    444568899999999876666555443333688899998775432211 11111   124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      .+|.||.|..
T Consensus        81 ~~d~vi~~ag   90 (251)
T PRK07231         81 SVDILVNNAG   90 (251)
T ss_pred             CCCEEEECCC
Confidence            6788887754

>PRK07063 short chain dehydrogenase; Provisional

Probab=82.85  E-value=9.4  Score=35.23  Aligned_cols=82  Identities=15%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .+++||=.|++. .++.    .|++.|++|+.++.+++-.+.+.+.+..   ..++.++.+|..+...-..+.+...  .
T Consensus         6 ~~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~   82 (260)
T PRK07063          6 AGKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE--E   82 (260)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH--H
Confidence            467889888754 4444    4445689999999988777666655532   2367888899877532221111111  1


Q ss_pred             cCCCcceEeecc
Q 016715          214 SSSGFAKVVANI  225 (384)
Q Consensus       214 ~~~~~d~Vv~Nl  225 (384)
                      ..+..|.+|.|.
T Consensus        83 ~~g~id~li~~a   94 (260)
T PRK07063         83 AFGPLDVLVNNA   94 (260)
T ss_pred             HhCCCcEEEECC
Confidence            124678888774

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=82.81  E-value=12  Score=34.28  Aligned_cols=92  Identities=24%  Similarity=0.373  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          140 QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       140 ~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++++||-.|+|+ |..+..+++. |.+|++++.++...+.++..-    .-.++  |...........   .  .....
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g----~~~~~--~~~~~~~~~~~~---~--~~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG----ADHVI--DYKEEDLEEELR---L--TGGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC----Cceec--cCCcCCHHHHHH---H--hcCCC
Confidence            6788999999985 6666666665 789999999988877775431    11111  111111111000   0  12356


Q ss_pred             cceEeeccCc-cccHHHHHHhcccCC
Q 016715          218 FAKVVANIPF-NISTDVIKQLLPMGD  242 (384)
Q Consensus       218 ~d~Vv~NlPy-~i~~~il~~L~~~g~  242 (384)
                      +|.++.+.+- ......+..+...|.
T Consensus       202 ~d~vi~~~~~~~~~~~~~~~l~~~G~  227 (271)
T cd05188         202 ADVVIDAVGGPETLAQALRLLRPGGR  227 (271)
T ss_pred             CCEEEECCCCHHHHHHHHHhcccCCE
Confidence            8999877654 444455555555544

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK08862 short chain dehydrogenase; Provisional

Probab=82.80  E-value=8.7  Score=35.14  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhh-hhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~  215 (384)
                      .++.+|=.|++.|.   ++..+++.|++|+.+..++..++.+.+.+.. ...+..+..|..+..--. .+..+.+   ..
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   80 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQ---QF   80 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence            46789999988865   4555666799999999998877766555432 235666677766543211 1111111   11


Q ss_pred             C-CcceEeecc
Q 016715          216 S-GFAKVVANI  225 (384)
Q Consensus       216 ~-~~d~Vv~Nl  225 (384)
                      + ..|.+|.|.
T Consensus        81 g~~iD~li~na   91 (227)
T PRK08862         81 NRAPDVLVNNW   91 (227)
T ss_pred             CCCCCEEEECC
Confidence            3 689998885

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=82.70  E-value=6.7  Score=36.83  Aligned_cols=39  Identities=28%  Similarity=0.322  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHH
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVR  180 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~  180 (384)
                      ...+|||+|+|+|-.+...+.. +++|+.-|.-. .++.++
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~  125 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLK  125 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHH
Confidence            3567999999999888888875 66777777543 333333

>PRK07814 short chain dehydrogenase; Provisional

Probab=82.69  E-value=8.8  Score=35.64  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhh-hhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHM-LSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~-~~~~~~~~~  214 (384)
                      ++.++|=.|+ +|.++..++    ++|++|++++.+++-.+.+.+.+.. ..++.++.+|..+...-... ....+   .
T Consensus         9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   84 (263)
T PRK07814          9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE---A   84 (263)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---H
Confidence            4678888885 455555544    4588999999988766655544432 23678888998775432211 11111   1


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|.||.|.
T Consensus        85 ~~~id~vi~~A   95 (263)
T PRK07814         85 FGRLDIVVNNV   95 (263)
T ss_pred             cCCCCEEEECC
Confidence            24678888764

>PRK08589 short chain dehydrogenase; Validated

Probab=82.41  E-value=10  Score=35.43  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +++++|=.|++.|.   ++..|++.|++|+.++.++.. +.+.+.+.. ..++.++.+|..+..--..+.+....  ..+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~g   81 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAV-SETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE--QFG   81 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHH-HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH--HcC
Confidence            46688888876442   233445568999999998443 333333322 23688888898765322211111111  124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.+|.|.-
T Consensus        82 ~id~li~~Ag   91 (272)
T PRK08589         82 RVDVLFNNAG   91 (272)
T ss_pred             CcCEEEECCC
Confidence            6788888753

>PRK07024 short chain dehydrogenase; Provisional

Probab=82.37  E-value=10  Score=35.02  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             CEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccCCC
Q 016715          143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSSG  217 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~~~  217 (384)
                      .+||=.|++ |.++..++    +.|++|+.++.+++.++.+.+.+...+++.++.+|+.+...-.. +..+.+   ..+.
T Consensus         3 ~~vlItGas-~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~---~~g~   78 (257)
T PRK07024          3 LKVFITGAS-SGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIA---AHGL   78 (257)
T ss_pred             CEEEEEcCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHH---hCCC
Confidence            467777764 45554444    45889999999987776655544322378888999877432111 111111   1245


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|.+|.|.
T Consensus        79 id~lv~~a   86 (257)
T PRK07024         79 PDVVIANA   86 (257)
T ss_pred             CCEEEECC
Confidence            78888774

>PRK06172 short chain dehydrogenase; Provisional

Probab=82.20  E-value=9.2  Score=35.10  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++ |.++..+    ++.|++|+.++.++.-.+.+.+.+.. ..++.++.+|+.+..--..+.+...  ...
T Consensus         6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~   82 (253)
T PRK06172          6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTI--AAY   82 (253)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence            45788888864 4444444    44588999999988766555544432 2468889999877532111111111  112


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|.||.|.-
T Consensus        83 g~id~li~~ag   93 (253)
T PRK06172         83 GRLDYAFNNAG   93 (253)
T ss_pred             CCCCEEEECCC
Confidence            46788887753

>PRK07677 short chain dehydrogenase; Provisional

Probab=82.17  E-value=9.2  Score=35.15  Aligned_cols=81  Identities=14%  Similarity=0.206  Sum_probs=47.6

Q ss_pred             CEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       143 ~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      +++|=.|++.|.   ++..+++.|++|++++.++.-.+.+.+.+.. ..++.++.+|..+...-..+.+....  ..+..
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~i   79 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE--KFGRI   79 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH--HhCCc
Confidence            567877875542   2334445688999999988766665554432 24788888998664322111111110  12457


Q ss_pred             ceEeecc
Q 016715          219 AKVVANI  225 (384)
Q Consensus       219 d~Vv~Nl  225 (384)
                      |.+|.|.
T Consensus        80 d~lI~~a   86 (252)
T PRK07677         80 DALINNA   86 (252)
T ss_pred             cEEEECC
Confidence            8888764

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=82.13  E-value=1.4  Score=40.40  Aligned_cols=61  Identities=20%  Similarity=0.302  Sum_probs=41.5

Q ss_pred             CEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          143 DIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      -++|||||=+......  ..+ .+|++||+++.             .-.+.+.|+++.|++..         ..+.||+|
T Consensus        53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~-------------~~~I~qqDFm~rplp~~---------~~e~FdvI  108 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ-------------HPGILQQDFMERPLPKN---------ESEKFDVI  108 (219)
T ss_pred             ceEEeecccCCCCccc--ccCceeeEEeecCCC-------------CCCceeeccccCCCCCC---------cccceeEE
Confidence            5899999864443222  223 37999998741             33578999999987641         34689999


Q ss_pred             eeccCc
Q 016715          222 VANIPF  227 (384)
Q Consensus       222 v~NlPy  227 (384)
                      +..+-.
T Consensus       109 s~SLVL  114 (219)
T PF11968_consen  109 SLSLVL  114 (219)
T ss_pred             EEEEEE
Confidence            877654

>PRK08339 short chain dehydrogenase; Provisional

Probab=82.08  E-value=10  Score=35.30  Aligned_cols=82  Identities=16%  Similarity=0.230  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++.-++.+.+.+..  ..++.++.+|+.+..--+.+.+...   ..
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~---~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK---NI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH---hh
Confidence            46788888876432   3344555699999999998776666554432  2368889999887543222221111   12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|.
T Consensus        84 g~iD~lv~na   93 (263)
T PRK08339         84 GEPDIFFFST   93 (263)
T ss_pred             CCCcEEEECC
Confidence            4678888774

>PRK08226 short chain dehydrogenase; Provisional

Probab=82.02  E-value=10  Score=35.03  Aligned_cols=83  Identities=12%  Similarity=0.110  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+.++|=.|+. |.++..++    +.|++|+.++.+....+.+.+......++.++.+|+.+...-+.+.+....  ..+
T Consensus         5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~~   81 (263)
T PRK08226          5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE--KEG   81 (263)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence            35688877775 55555554    458899999998765444433322234677888998775432222211111  124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.+|.|.-
T Consensus        82 ~id~vi~~ag   91 (263)
T PRK08226         82 RIDILVNNAG   91 (263)
T ss_pred             CCCEEEECCC
Confidence            6788887643

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=81.88  E-value=9.6  Score=35.02  Aligned_cols=82  Identities=15%  Similarity=0.155  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++++|=.|+. |.++..    |++.|++|++++.++.-.+.+.+.+... .++.++.+|+.+...-+.+.+-..  ...
T Consensus         6 ~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   82 (262)
T PRK13394          6 NGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA--ERF   82 (262)
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            35678866663 444444    4455889999999987665555544322 367888999877543221111111  012


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.||.|.
T Consensus        83 ~~~d~vi~~a   92 (262)
T PRK13394         83 GSVDILVSNA   92 (262)
T ss_pred             CCCCEEEECC
Confidence            4578888764

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.75  E-value=10  Score=35.48  Aligned_cols=85  Identities=20%  Similarity=0.247  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCcc----h-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGT----G-SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~----G-~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++.+|=.|+|.    | .++..+++.|++|+.++.+....+.+.+.....+.+.++.+|+.+..--+.+.+....  ..
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~   82 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK--VW   82 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh--hc
Confidence            467889999864    3 2456666679999988877543333333322224566778888775432222221111  22


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      +..|.+|.|.-+
T Consensus        83 g~iD~linnAg~   94 (262)
T PRK07984         83 PKFDGFVHSIGF   94 (262)
T ss_pred             CCCCEEEECCcc
Confidence            568999988643

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=81.73  E-value=2.3  Score=42.13  Aligned_cols=77  Identities=17%  Similarity=0.288  Sum_probs=60.8

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~  197 (384)
                      ++......-..+..+.+.+|..|+|+.|-.|.-|..++..   ..+++|.|.|+.-.+.++..+..  ...+...++|++
T Consensus       195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~  274 (413)
T KOG2360|consen  195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFL  274 (413)
T ss_pred             eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCcccccccccc
Confidence            4444444455666677888999999999999999988875   35899999999999988887653  346778899999


Q ss_pred             cc
Q 016715          198 KC  199 (384)
Q Consensus       198 ~~  199 (384)
                      ..
T Consensus       275 ~t  276 (413)
T KOG2360|consen  275 NT  276 (413)
T ss_pred             CC
Confidence            86

>PRK07774 short chain dehydrogenase; Provisional

Probab=81.69  E-value=10  Score=34.57  Aligned_cols=84  Identities=14%  Similarity=0.191  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+.++|=.| |+|.++..+++    .|.+|+.++.++.-...+...+.. ..++.++.+|..+...-..+......  ..
T Consensus         5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~   81 (250)
T PRK07774          5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVS--AF   81 (250)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--Hh
Confidence            356788888 45566655554    588999999987665555444432 23667788888765432211111110  12


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      +..|.||.|..+
T Consensus        82 ~~id~vi~~ag~   93 (250)
T PRK07774         82 GGIDYLVNNAAI   93 (250)
T ss_pred             CCCCEEEECCCC
Confidence            457899877543

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.69  E-value=9.2  Score=35.96  Aligned_cols=84  Identities=19%  Similarity=0.145  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCcc----h-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGT----G-SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~----G-~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      +++.+|=.|++.    | .++..|++.|++|+.++.+....+.+++.....+....+.+|+.+..--+.+.+...  ...
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~--~~~   83 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALE--KKW   83 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHH--HHh
Confidence            467899999764    3 334555667999999887754433333332222233467788877543222211111  122


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|++|.|.-
T Consensus        84 g~iD~lVnnAG   94 (271)
T PRK06505         84 GKLDFVVHAIG   94 (271)
T ss_pred             CCCCEEEECCc
Confidence            57899988753

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.67  E-value=8.8  Score=35.77  Aligned_cols=84  Identities=18%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             CCCEEEEEcC-cchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGP-GTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~-G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++.+|=.|+ |++.++..++    +.|++|+....+....+.+++.....+....+.+|+.+..--+.+.+....  ..
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   82 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGK--HW   82 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH--Hh
Confidence            4678999997 3444444444    568999887665444444444332223445678888775433222222211  22


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|++|.|.-
T Consensus        83 g~iD~lVnnAG   93 (261)
T PRK08690         83 DGLDGLVHSIG   93 (261)
T ss_pred             CCCcEEEECCc
Confidence            56899998854

>PRK07478 short chain dehydrogenase; Provisional

Probab=81.64  E-value=12  Score=34.44  Aligned_cols=83  Identities=14%  Similarity=0.212  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCcch--H-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G--~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|  . ++..|++.|++|+.++.++.-++.+.+.+... .++.++.+|..+...-..+.+....  ..+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~   82 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE--RFG   82 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--hcC
Confidence            3567887777543  2 23344556899999999887666665554332 3678888998775432211111111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        83 ~id~li~~a   91 (254)
T PRK07478         83 GLDIAFNNA   91 (254)
T ss_pred             CCCEEEECC
Confidence            678888775

>PRK07035 short chain dehydrogenase; Provisional

Probab=81.50  E-value=11  Score=34.42  Aligned_cols=84  Identities=15%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|.   ++..|++.|++|++++.++.-.+.+.+.+... .++.++..|..+..--+.+......  ..+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~   84 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE--RHG   84 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence            35678888877542   23344556889999999877666555554322 3577788888765422211111111  124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.+|.|..
T Consensus        85 ~id~li~~ag   94 (252)
T PRK07035         85 RLDILVNNAA   94 (252)
T ss_pred             CCCEEEECCC
Confidence            5788887653

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=81.45  E-value=11  Score=34.77  Aligned_cols=82  Identities=16%  Similarity=0.152  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhh-hhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHM-LSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~-~~~~~~~~~  214 (384)
                      ++.++|=.| |+|.++..+++    .|++|+.++.+.+-.+.+...+... .++.++.+|..+...-... ..+..   .
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~---~   86 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLE---R   86 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH---H
Confidence            467888888 45666666554    4889999999887766665554322 3678889998875422111 11111   1


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|.||.|..
T Consensus        87 ~~~id~vi~~ag   98 (259)
T PRK08213         87 FGHVDILVNNAG   98 (259)
T ss_pred             hCCCCEEEECCC
Confidence            245788887754

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=81.31  E-value=11  Score=34.57  Aligned_cols=82  Identities=16%  Similarity=0.170  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhh-hhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~  214 (384)
                      ++++||=.|++ |.++..++    +.|++|+.++.+++-++.+.+.+.. ..++.++.+|..+..--. .+.....   .
T Consensus        10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~   85 (256)
T PRK06124         10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA---E   85 (256)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---h
Confidence            46788888854 55555444    4589999999998766555544432 236888999987643211 1111111   1


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|.+|.|.-
T Consensus        86 ~~~id~vi~~ag   97 (256)
T PRK06124         86 HGRLDILVNNVG   97 (256)
T ss_pred             cCCCCEEEECCC
Confidence            245788887743

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.03  E-value=12  Score=33.77  Aligned_cols=59  Identities=15%  Similarity=0.251  Sum_probs=40.9

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      .+++||=.|++ |.++..++    +.|++|++++.++.-.+.+.+.....+++.++.+|..+..
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~   66 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTE   66 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHH
Confidence            35789999885 44444443    4588999999988776666444433347888899988754

>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated

Probab=80.83  E-value=2.8  Score=39.96  Aligned_cols=55  Identities=15%  Similarity=0.228  Sum_probs=43.1

Q ss_pred             HHhcCCCchHHHHH---hhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          329 SAFNGKRKMLRKSL---QHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       329 ~~F~~rrk~l~~~l---~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      ..+..+++.|+..|   +.+.  +.-..+++|=.++|+|..++.+||.+|+..|+..+.+
T Consensus       149 ~~l~~~~~~Ik~~LLDQ~~iaGiGNiya~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~~~~  208 (274)
T PRK01103        149 AKLRKKKTAIKPALLDQTVVVGVGNIYADEALFRAGIHPERPAGSLSRAEAERLVDAIKA  208 (274)
T ss_pred             HHHhcCCccHHHHhhcCCeEecccHhHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence            34456788899988   3333  3334478899999999999999999999999987754

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.71  E-value=11  Score=34.11  Aligned_cols=82  Identities=11%  Similarity=0.150  Sum_probs=48.9

Q ss_pred             CCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +.++|=.|+ +|.++..+++    .|++|++++.++.-.+.....+... .++.++.+|..+..--........  ...+
T Consensus         7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   83 (239)
T PRK07666          7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLK--NELG   83 (239)
T ss_pred             CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            467888884 6777766554    4889999999876555444333322 368888999876532111111110  1124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.||.|..
T Consensus        84 ~id~vi~~ag   93 (239)
T PRK07666         84 SIDILINNAG   93 (239)
T ss_pred             CccEEEEcCc
Confidence            5788887753

>PRK05866 short chain dehydrogenase; Provisional

Probab=80.59  E-value=12  Score=35.56  Aligned_cols=82  Identities=17%  Similarity=0.295  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+.+||=.|++. .++..+    ++.|++|++++.+++.++.+.+.+.. ...+.++.+|+.+...-.........  ..
T Consensus        39 ~~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~--~~  115 (293)
T PRK05866         39 TGKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEK--RI  115 (293)
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence            356888888754 444444    45588999999998777666555432 23677888998775432221111111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|.
T Consensus       116 g~id~li~~A  125 (293)
T PRK05866        116 GGVDILINNA  125 (293)
T ss_pred             CCCCEEEECC
Confidence            4678888774

>PRK06194 hypothetical protein; Provisional

Probab=80.41  E-value=13  Score=34.92  Aligned_cols=82  Identities=7%  Similarity=0.050  Sum_probs=48.2

Q ss_pred             CCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +.+||=.|++ |.++..    |++.|++|+.++.+....+.+.+.+.. ..++.++.+|+.+...-....+...  ...+
T Consensus         6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~--~~~g   82 (287)
T PRK06194          6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAAL--ERFG   82 (287)
T ss_pred             CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            5678877754 444444    445588999999987766655444432 2367889999876532111111111  0124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.||.|.-
T Consensus        83 ~id~vi~~Ag   92 (287)
T PRK06194         83 AVHLLFNNAG   92 (287)
T ss_pred             CCCEEEECCC
Confidence            5788887753

>PRK05872 short chain dehydrogenase; Provisional

Probab=80.34  E-value=14  Score=35.15  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~  215 (384)
                      .+++||=.|++. .++..    +++.|++|+.++.++.-++.+.+.+.....+..+.+|..+..--..+. .+.+   ..
T Consensus         8 ~gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~   83 (296)
T PRK05872          8 AGKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVE---RF   83 (296)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHH---Hc
Confidence            467888888654 34433    444588999999998877766655543234555668877643221111 1111   12


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|.+|.|.-
T Consensus        84 g~id~vI~nAG   94 (296)
T PRK05872         84 GGIDVVVANAG   94 (296)
T ss_pred             CCCCEEEECCC
Confidence            56899988753

>PLN02780 ketoreductase/ oxidoreductase

Probab=80.32  E-value=12  Score=36.39  Aligned_cols=58  Identities=22%  Similarity=0.342  Sum_probs=40.7

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-C--CCeEEEEccccc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVK  198 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~--~~v~~~~gD~~~  198 (384)
                      .|..+|=.|++.|.   ++..++++|++|+.++.+++-++.+.+.+.. .  .++..+..|+.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~  115 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG  115 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence            36789999976653   5555666799999999999877766655432 1  256667778763

>PRK08643 acetoin reductase; Validated

Probab=80.29  E-value=11  Score=34.54  Aligned_cols=82  Identities=11%  Similarity=0.157  Sum_probs=49.1

Q ss_pred             CCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ++.+|=+|+. |.++..+    ++.|++|+.++.++...+.+...+.. ..++.++.+|+.+..--.........  ..+
T Consensus         2 ~k~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~   78 (256)
T PRK08643          2 SKVALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVD--TFG   78 (256)
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence            3567777754 4455544    44588999999988776665555432 23678888998775432211111111  124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.+|.|..
T Consensus        79 ~id~vi~~ag   88 (256)
T PRK08643         79 DLNVVVNNAG   88 (256)
T ss_pred             CCCEEEECCC
Confidence            6788887753

>PRK05854 short chain dehydrogenase; Provisional

Probab=80.08  E-value=13  Score=35.81  Aligned_cols=83  Identities=14%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.+..+..-.+.+.+.+..   ..++.++.+|..+..--..+.+.+..  .
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~--~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA--E   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH--h
Confidence            46788888876443   2234445689999999887765555444321   23688889998876533322222211  2


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|++|.|.
T Consensus        91 ~~~iD~li~nA  101 (313)
T PRK05854         91 GRPIHLLINNA  101 (313)
T ss_pred             CCCccEEEECC
Confidence            35678888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
3fuu_A	271	T. Thermophilus 16s Rrna A1518 And A1519 Methyltran		8e-25
3fut_A	271	Apo-Form Of T. Thermophilus 16s Rrna A1518 And A151		2e-24
3uzu_A	279	The Structure Of The Ribosomal Rna Small Subunit Me		2e-22
3tqs_A	255	Structure Of The Dimethyladenosine Transferase (Ksg		3e-22
2h1r_A	299	Crystal Structure Of A Dimethyladenosine Transferas		6e-20
3ftc_A	249	Crystal Structure Of A. Aeolicus Ksga At 1.72-Angst		1e-19
3r9x_B	248	Crystal Structure Of Era In Complex With Mggdpnp, N		1e-19
3tpz_A	273	2.1 Angstrom Crystal Structure Of The L114p Mutant		1e-18
1zq9_A	285	Crystal Structure Of Human Dimethyladenosine Transf		2e-17
3grr_A	295	Crystal Structure Of The Complex Between S-Adenosyl		8e-17
1qyr_A	252	2.1 Angstrom Crystal Structure Of Ksga: A Universal		2e-16
3fyd_A	263	Crystal Structure Of Dim1 From The Thermophilic Arc		1e-13
3fyc_A	265	Crystal Structure Of Dim1 From The Thermophilic Arc		2e-13
2erc_A	244	Crystal Structure Of Ermc' A Rrna-Methyl Transferas		7e-12
1yub_A	245	Solution Structure Of An Rrna Methyltransferase (Er		1e-10

>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With Adenosine In Space Group P212121 Length = 271

Iteration: 1
 Score =  111 bits (277), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 136/273 (49%), Gaps = 22/273 (8%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           L   G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL AGA V 
Sbjct: 14  LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
           AIEKD  +  ++ E  + +    V Q+             L+   +   G + +VAN+P+
Sbjct: 73  AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
           +I+T ++ +LL  G  F+ +V L+Q+E A R+     +T  Y  + + V  ++  E  F 
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAERMTA-RPKTPAYGVLTLRVAHHAVAERLFD 178
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC- 346
           +P   FFP PKV +++V      A D P +      F +V +AF  +RK L  +L     
Sbjct: 179 LPPGAFFPPPKVWSSLVRLTPTGALDDPGL------FRLVEAAFGKRRKTLLNALAAAGY 232
Query: 347 TSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 379
               +E+AL  +GLP   R EEL L+ F +L  
Sbjct: 233 PKARVEEALRALGLPPRVRAEELDLEAFRRLRE 265

>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 Length = 271

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 22/273 (8%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           L   G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL AGA V 
Sbjct: 14  LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
           AIEKD  +  ++ E  + +    V Q+             L+   +   G + +VAN+P+
Sbjct: 73  AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
           +I+T ++ +LL  G  F+ +V L+Q+E A R      +T  Y  + + V  ++  E  F 
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAERXTA-RPKTPAYGVLTLRVAHHAVAERLFD 178
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC- 346
           +P   FFP PKV +++V      A D P +      F +V +AF  +RK L  +L     
Sbjct: 179 LPPGAFFPPPKVWSSLVRLTPTGALDDPGL------FRLVEAAFGKRRKTLLNALAAAGY 232
Query: 347 TSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 379
               +E+AL  +GLP   R EEL L+ F +L  
Sbjct: 233 PKARVEEALRALGLPPRVRAEELDLEAFRRLRE 265

>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit Methyltransferase A From Burkholderia Pseudomallei Length = 279

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 136/275 (49%), Gaps = 26/275 (9%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV----LLNAGATV 166
           +G F RK  GQ+++++  + D + AA   + G+ ++EIGPG G+LT      L   G+ +
Sbjct: 12  QGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPL 71
Query: 167 LAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
            A+E D+ ++G + +RF  + +L     L  DF               R       +++ 
Sbjct: 72  HAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSI-----------ARPGDEPSLRIIG 120
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEP 282
           N+P+NIS+ ++  L+    +  +   +LQ E   R+V EP   T  +  +++ + +    
Sbjct: 121 NLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQYRYVM 178
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
           +    VP  +F P PKVD+A+V        + PAV        +V++AF+ +RKMLR +L
Sbjct: 179 DKLIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPA-VLGEVVTAAFSQRRKMLRNTL 237
Query: 343 QHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 377
                 ++ +     +G     R E++ +D++V++
Sbjct: 238 GGYRDLVDFDA----LGFDLARRAEDIGVDEYVRV 268

>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From Coxiella Burnetii Length = 255

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 134/271 (49%), Gaps = 25/271 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ +
Sbjct: 4   RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           V  +++++     + + Q D ++          F   K+     +VV N+P+NIST ++ 
Sbjct: 64  VAFLQKKYNQQKNITIYQNDALQFD--------FSSVKTDKPL-RVVGNLPYNISTPLLF 114
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
            L        +    LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P
Sbjct: 115 HLFSQIHCIEDXHFXLQKE-VVRRITAEVGSHDYGRLSVXAQYFCDNTYLFTVSPQAFTP 173
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS-----LE 350
            P+V++A++   + +    P   +      +V  AF+ +RK +  +L+ L        LE
Sbjct: 174 PPRVESAIIRL-IPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLE 232
Query: 351 IEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
           I   L         RP+ELT++DFVK+ N++
Sbjct: 233 INPQL---------RPQELTVEDFVKISNIL 254

>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodium Falciparum Length = 299

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
           GQH + N  I D++  AA ++  DIVLEIG GTG+LT  LL     V+ I+ D  M+  V
Sbjct: 21  GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEV 80
Query: 180 RER--FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
           ++R  +   + L+V + D +K        ++F +      F    ANIP+ IS+ +I +L
Sbjct: 81  KKRCLYEGYNNLEVYEGDAIK--------TVFPK------FDVCTANIPYKISSPLIFKL 126
Query: 238 LPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQP 297
           +    +F   VL+ Q+E A R++  ++  S Y  + I V  + +      V R++F P P
Sbjct: 127 ISHRPLFKCAVLMFQKEFAERML-ANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPP 185
Query: 298 KVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
           KVD+ +V    K+++    +T+   + +++   F+ KRK L
Sbjct: 186 KVDSVIVKLIPKESS---FLTNFDEWDNLLRICFSRKRKTL 223

>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom Resolution Length = 249

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 142/272 (52%), Gaps = 39/272 (14%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
           +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      L  IE D+ 
Sbjct: 6   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 65
Query: 175 MVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
           MV    E   SI  ++L+V+ ED   F  C +   +              KVV N+P+N+
Sbjct: 66  MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 107
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
           ++ +I+  +   D     V ++Q+E A +L     + + +  +++FV  + +  Y   VP
Sbjct: 108 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL--QGKKDTGW--LSVFVRTFYDVNYVMTVP 163
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
              F P PKV +AV+  KL +   +P V   K++   ++  F  +RK+LRK +       
Sbjct: 164 PRFFVPPPKVQSAVI--KLVKNEKFP-VKDLKNYKKFLTKIFQNRRKVLRKKIP------ 214
Query: 350 EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
             E+ L + G+   +R E+L+L+DF KL+ LI
Sbjct: 215 --EELLKEAGINPDARVEQLSLEDFFKLYRLI 244

>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp, Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga Length = 248

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 142/272 (52%), Gaps = 39/272 (14%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
           +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      L  IE D+ 
Sbjct: 5   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 64
Query: 175 MVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
           MV    E   SI  ++L+V+ ED   F  C +   +              KVV N+P+N+
Sbjct: 65  MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 106
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
           ++ +I+  +   D     V ++Q+E A +L     + + +  +++FV  + +  Y   VP
Sbjct: 107 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL--QGKKDTGW--LSVFVRTFYDVNYVMTVP 162
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
              F P PKV +AV+  KL +   +P V   K++   ++  F  +RK+LRK +       
Sbjct: 163 PRFFVPPPKVQSAVI--KLVKNEKFP-VKDLKNYKKFLTKIFQNRRKVLRKKIP------ 213
Query: 350 EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
             E+ L + G+   +R E+L+L+DF KL+ LI
Sbjct: 214 --EELLKEAGINPDARVEQLSLEDFFKLYRLI 243

>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E. Coli Ksga Length = 273

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 13/273 (4%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
           +G   RK  GQ+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE
Sbjct: 7   QGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIE 66
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
            D+ +   ++       +L + Q+D       +   +  E  +      +V  N P+NIS
Sbjct: 67  LDRDLAARLQTHPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNPPYNIS 119
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
           T ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP 
Sbjct: 120 TPLMFHLFSYTDAIADMHFMLQKEVVNRLVA-GPNSKAYGRLSVMAQYYCNVIPVLEVPP 178
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
           + F P PKVD+AVV         +P V   +    + + AFN +RK +R SL +L  S+E
Sbjct: 179 SAFTPPPKVDSAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLF-SVE 236
Query: 351 IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
           +   L  +G+    R E +++  + ++ N + +
Sbjct: 237 V---LTGMGIDPAMRAENISVAQYCQMANYLAE 266

>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase Length = 285

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 132/288 (45%), Gaps = 49/288 (17%)
Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
           +GQH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +V  
Sbjct: 6   IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAE 65
Query: 179 VRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           + +R        +L+VL  D +K  +                F   VAN+P+ IS+  + 
Sbjct: 66  LHKRVQGTPVASKLQVLVGDVLKTDL--------------PFFDTCVANLPYQISSPFVF 111
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           +LL     F   +L+ Q E ALRLV +P  +   Y  ++I     +  ++  KV + NF 
Sbjct: 112 KLLLHRPFFRCAILMFQREFALRLVAKPGDKL--YCRLSINTQLLARVDHLMKVGKNNFR 169
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK-------------MLRKS 341
           P PKV+++VV  + K     P   + + +  +V   F  K K             +L K+
Sbjct: 170 PPPKVESSVVRIEPKNP---PPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKN 226
Query: 342 LQHLCT------------SLEIEKALGDVGLPATSRPEELTLDDFVKL 377
            +  C+            + +I++ L   G  +  R   + +DDF++L
Sbjct: 227 YRIHCSVHNIIIPEDFSIADKIQQILTSTGF-SDKRARSMDIDDFIRL 273

>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Homocysteine And Methanocaldococcus Jannaschi Dim1. Length = 295

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 22/248 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P+K LGQ ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ 
Sbjct: 24  PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS 83
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +     +     + ++++  D +K  +            +   F KVVAN+P+ IS+ + 
Sbjct: 84  LEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPIT 131
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
            +L+  G  F   VL+ Q E A R+V  +  T +Y  +++ V   ++ E   KVP + F+
Sbjct: 132 FKLIKRG--FDLAVLMYQYEFAKRMVAAA-GTKDYGRLSVAVQSRADVEIVAKVPPSAFY 188
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL----- 349
           P+PKV +A+V  K  +   +  + +   F   + + F  + K +RK+L      L     
Sbjct: 189 PKPKVYSAIVKIKPNKGKYH--IENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKD 246
Query: 350 EIEKALGD 357
           E++K L D
Sbjct: 247 EMKKILED 254

>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase Length = 252

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 125/263 (47%), Gaps = 13/263 (4%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D       +   +  E  +      +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSY 113
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
            D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD
Sbjct: 114 TDAIADMHFMLQKEVVNRLVA-GPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 172
Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
           +AVV         +P V   +    + + AFN +RK +R SL +L  S+E+   L  +G+
Sbjct: 173 SAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLF-SVEV---LTGMGI 227
Query: 361 PATSRPEELTLDDFVKLHNLIVQ 383
               R E +++  + ++ N + +
Sbjct: 228 DPAMRAENISVAQYCQMANYLAE 250

>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 263

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 22/242 (9%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ +     
Sbjct: 1   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYAN 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
           +     + ++++  D +K  +            +   F KVVAN+P+ IS+ +  +L+  
Sbjct: 61  KLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIKR 108
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
           G  F   VL+ Q E A R+V  +  T +Y  +++ V   ++ E   KVP + F+P+PKV 
Sbjct: 109 G--FDLAVLMYQYEFAKRMVAAA-GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVY 165
Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKAL 355
           +A+V  K+K       + +   F   + + F  + K +RK+L      L     E++K L
Sbjct: 166 SAIV--KIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKIL 223
Query: 356 GD 357
            D
Sbjct: 224 ED 225

>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 265

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
            Q ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ +    
Sbjct: 2   AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYA 61
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            +     + ++++  D +K  +            +   F KVVAN+P+ IS+ +  +L+ 
Sbjct: 62  NKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIK 109
Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
            G  F   VL+ Q E A R+V     T +Y  +++ V   ++ E   KVP + F+P+PKV
Sbjct: 110 RG--FDLAVLMYQYEFAKRMVAKE-GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKV 166
Query: 300 DAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKA 354
            +A+V  K  +   +  + +   F   + + F  + K +RK+L      L     E++K 
Sbjct: 167 YSAIVKIKPNKGKYH--IENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKI 224
Query: 355 LGD 357
           L D
Sbjct: 225 LED 227

>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase Length = 244

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 31/249 (12%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
           D++     + E D + EIG G G  T  L+     V AIE D  +      +    D  +
Sbjct: 20  DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQ 79
Query: 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
           VL +D ++          F+  K+ S   K+  NIP+NISTD+I++++    I  E+ L+
Sbjct: 80  VLNKDILQ----------FKFPKNQS--YKIFGNIPYNISTDIIRKIV-FDSIADEIYLI 126
Query: 251 LQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQ 310
           ++   A RL+         R + +F+    +      VPR  F P+PKV+++++    K+
Sbjct: 127 VEYGFAKRLLNTK------RSLALFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKK 180
Query: 311 ATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELT 370
           +          ++F M         K + K  + + T  +   +L   G+   +    ++
Sbjct: 181 SRISHKDKQKYNYFVM---------KWVNKEYKKIFTKNQFNNSLKHAGIDDLN---NIS 228
Query: 371 LDDFVKLHN 379
            + F+ L N
Sbjct: 229 FEQFLSLFN 237

>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam) That Confers Macrolide-Lincosamide-Streptogramin Antibiotic Resistance, Nmr, Minimized Average Structure Length = 245

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
            Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H+  L 
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLS 67
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            E+     ++ ++ +D ++          F  ++      K+V NIP+++ST +IK+++ 
Sbjct: 68  SEKLKLNTRVTLIHQDILQFQ--------FPNKQR----YKIVGNIPYHLSTQIIKKVV- 114
Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
                S++ L+++E    R ++       +R + + ++     +   K+P   F P+PKV
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDI------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKV 168
Query: 300 DAAVVTFKLKQATDYP 315
           ++ ++    +  TD P
Sbjct: 169 NSVLIKLT-RHTTDVP 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	2e-72
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	6e-71
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	1e-69
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	2e-68
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	9e-68
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	5e-67
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	7e-66
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	2e-64
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	4e-64
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	5e-64
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	1e-43
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-07
3ege_A	261	Putative methyltransferase from antibiotic biosyn	3e-07
3i9f_A	170	Putative type 11 methyltransferase; structural gen	5e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	8e-07
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	1e-06
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	1e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	7e-06
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	7e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	7e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	3e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	3e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	5e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	7e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	8e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	8e-05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	1e-04
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	1e-04
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	2e-04
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	2e-04
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	2e-04
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	3e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	4e-04
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	5e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	5e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	6e-04
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	6e-04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	6e-04
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	8e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	8e-04
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	8e-04

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} Length = 255

 Score =  225 bits (577), Expect = 2e-72
 Identities = 65/268 (24%), Positives = 131/268 (48%), Gaps = 17/268 (6%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
            RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ 
Sbjct: 3   MRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRD 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +V  +++++     + + Q D ++        S+   +       +VV N+P+NIST ++
Sbjct: 63  LVAFLQKKYNQQKNITIYQNDALQFDFS----SVKTDKP-----LRVVGNLPYNISTPLL 113

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
             L        ++  +LQ+E   R+  E    + +Y  +++   ++ +  Y F V    F
Sbjct: 114 FHLFSQIHCIEDMHFMLQKEVVRRITAEVG--SHDYGRLSVMAQYFCDNTYLFTVSPQAF 171

Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
            P P+V++A++    +         +      +V  AF+ +RK +  +L+ L    +   
Sbjct: 172 TPPPRVESAIIRLIPRHNFTPV-AKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPL 230

Query: 354 ALGDVGLPATSRPEELTLDDFVKLHNLI 381
                 +    RP+ELT++DFVK+ N++
Sbjct: 231 L----EINPQLRPQELTVEDFVKISNIL 254

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295

 Score =  223 bits (570), Expect = 6e-71
 Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 31/292 (10%)

Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
           + +    S    P+K LGQ ++++    ++   +A + + D+VLEIG G G LT  L   
Sbjct: 12  SGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN 71

Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
              V  IE D+ +     +     + ++++  D +K  +            +   F KVV
Sbjct: 72  AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVV 119

Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSE 281
           AN+P+ IS+ +  +L+  G  F   VL+ Q E A R+V      T +Y  +++ V   ++
Sbjct: 120 ANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMVAAAG--TKDYGRLSVAVQSRAD 175

Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
            E   KVP + F+P+PKV +A+V  K  +      + +   F   + + F  + K +RK+
Sbjct: 176 VEIVAKVPPSAFYPKPKVYSAIVKIKPNK--GKYHIENENFFDDFLRAIFQHRNKSVRKA 233

Query: 342 LQHLCTSLEIEKAL------------GDVGLPATSRPEELTLDDFVKLHNLI 381
           L      L   K               ++      +  +L++ D V L N  
Sbjct: 234 LIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEF 285

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} Length = 279

 Score =  219 bits (560), Expect = 1e-69
 Identities = 70/285 (24%), Positives = 139/285 (48%), Gaps = 20/285 (7%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--- 160
              +   +G F RK  GQ+++++  + D + AA   + G+ ++EIGPG G+LT  ++   
Sbjct: 5   MSNSRQHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARL 64

Query: 161 -NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
              G+ + A+E D+ ++G + +RF   + L++   D +     S      E         
Sbjct: 65  ATPGSPLHAVELDRDLIGRLEQRFG--ELLELHAGDALTFDFGSIARPGDEPS------L 116

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
           +++ N+P+NIS+ ++  L+    +  +   +LQ E   R+V EP   T  +  +++ + +
Sbjct: 117 RIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQY 174

Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
               +    VP  +F P PKVD+A+V        + PAV        +V++AF+ +RKML
Sbjct: 175 RYVMDKLIDVPPESFQPPPKVDSAIVRMIPHAPHELPAV-DPAVLGEVVTAAFSQRRKML 233

Query: 339 RKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
           R +L      ++ +      G     R E++ +D++V++   +  
Sbjct: 234 RNTLGGYRDLVDFDAL----GFDLARRAEDIGVDEYVRVAQAVAS 274

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Length = 244

 Score =  215 bits (549), Expect = 2e-68
 Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 31/267 (11%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ +    D++     + E D + EIG G G  T  L+     V AIE D  
Sbjct: 4   KNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK 63

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +      +    D  +VL +D ++                 +   K+  NIP+NISTD+I
Sbjct: 64  LCKTTENKLVDHDNFQVLNKDILQFKF------------PKNQSYKIFGNIPYNISTDII 111

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           ++++    I  E+ L+++   A RL+      +  R + +F+    +      VPR  F 
Sbjct: 112 RKIV-FDSIADEIYLIVEYGFAKRLL------NTKRSLALFLMAEVDISILSMVPREYFH 164

Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
           P+PKV+++++    K+     +    + +   V    N + K +    Q          +
Sbjct: 165 PKPKVNSSLIRLNRKK--SRISHKDKQKYNYFVMKWVNKEYKKIFTKNQ-------FNNS 215

Query: 355 LGDVGLPATSRPEELTLDDFVKLHNLI 381
           L   G+        ++ + F+ L N  
Sbjct: 216 LKHAGI---DDLNNISFEQFLSLFNSY 239

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A Length = 252

 Score =  213 bits (545), Expect = 9e-68
 Identities = 63/264 (23%), Positives = 125/264 (47%), Gaps = 15/264 (5%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D +  +       + +         +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQDAMTFNFGELAEKMGQPL-------RVFGNLPYNISTPLMFHLFSY 113

Query: 241 GDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
            D  +++  +LQ+E   RLV  P+  +  Y  +++   +Y       +VP + F P PKV
Sbjct: 114 TDAIADMHFMLQKEVVNRLVAGPN--SKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKV 171

Query: 300 DAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVG 359
           D+AVV         +P V   +    + + AFN +RK +R SL +L +     + L  +G
Sbjct: 172 DSAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLFS----VEVLTGMG 226

Query: 360 LPATSRPEELTLDDFVKLHNLIVQ 383
           +    R E +++  + ++ N + +
Sbjct: 227 IDPAMRAENISVAQYCQMANYLAE 250

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299

 Score =  213 bits (544), Expect = 5e-67
 Identities = 78/298 (26%), Positives = 125/298 (41%), Gaps = 47/298 (15%)

Query: 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLA 168
           +S GR      GQH + N  I D++  AA ++  DIVLEIG GTG+LT  LL     V+ 
Sbjct: 10  HSSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVIT 69

Query: 169 IEKDQHMVGLVRERF--ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
           I+ D  M+  V++R      + L+V + D +K                   F    ANIP
Sbjct: 70  IDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK--------------FDVCTANIP 115

Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYK 285
           + IS+ +I +L+    +F   VL+ Q+E A R++       S Y  + I V  + +    
Sbjct: 116 YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG--DSNYSRLTINVKLFCKVTKV 173

Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
             V R++F P PKVD+ +V    K++     +T+   + +++   F+ KRK L    +  
Sbjct: 174 CNVNRSSFNPPPKVDSVIVKLIPKES---SFLTNFDEWDNLLRICFSRKRKTLHAIFKRN 230

Query: 346 CTSL------------------------EIEKALGDVGLPATSRPEELTLDDFVKLHN 379
                                            L  + +    R   L  +DF+KL  
Sbjct: 231 AVLNMLEHNYKNWCTLNKQVPVNFPFKKYCLDVLEHLDM-CEKRSINLDENDFLKLLL 287

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285

 Score =  209 bits (535), Expect = 7e-66
 Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 49/293 (16%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
              +GQH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +
Sbjct: 3   NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRL 62

Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
           V  + +R        +L+VL  D +K  +                F   VAN+P+ IS+ 
Sbjct: 63  VAELHKRVQGTPVASKLQVLVGDVLKTDLPF--------------FDTCVANLPYQISSP 108

Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
            + +LL     F   +L+ Q E ALRLV +P      Y  ++I     +  ++  KV + 
Sbjct: 109 FVFKLLLHRPFFRCAILMFQREFALRLVAKPG--DKLYCRLSINTQLLARVDHLMKVGKN 166

Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI 351
           NF P PKV+++VV  + K     P   + + +  +V   F  K K L  + +       +
Sbjct: 167 NFRPPPKVESSVVRIEPKNP---PPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLL 223

Query: 352 EK-------------------------ALGDVGLPATSRPEELTLDDFVKLHN 379
           EK                          L   G     R   + +DDF++L +
Sbjct: 224 EKNYRIHCSVHNIIIPEDFSIADKIQQILTSTGFS-DKRARSMDIDDFIRLLH 275

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Length = 245

 Score =  205 bits (523), Expect = 2e-64
 Identities = 51/267 (19%), Positives = 108/267 (40%), Gaps = 31/267 (11%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H
Sbjct: 3   KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  L  E+     ++ ++ +D ++                +    K+V NIP+++ST +I
Sbjct: 63  LFNLSSEKLKLNTRVTLIHQDILQFQF------------PNKQRYKIVGNIPYHLSTQII 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           K+++      S++ L+++E    R          +R + + ++     +   K+P   F 
Sbjct: 111 KKVV-FESRASDIYLIVEEGFYKRT------LDIHRTLGLLLHTQVSIQQLLKLPAECFH 163

Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
           P+PKV++ ++                K +   VS   N + + L    Q         +A
Sbjct: 164 PKPKVNSVLIKLTRHTT--DVPDKYWKLYTYFVSKWVNREYRQLFTKNQ-------FHQA 214

Query: 355 LGDVGLPATSRPEELTLDDFVKLHNLI 381
           +    +   +    +T +  + + N  
Sbjct: 215 MKHAKV---NNLSTITYEQVLSIFNSY 238

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* Length = 249

 Score =  204 bits (521), Expect = 4e-64
 Identities = 77/268 (28%), Positives = 135/268 (50%), Gaps = 29/268 (10%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQ 173
            +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      +  IE D+
Sbjct: 5   LKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDR 64

Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
            MV  ++      ++L+V+ ED  K        SL +         KVV N+P+N+++ +
Sbjct: 65  EMVENLKSIGD--ERLEVINEDASKFPFC----SLGKE-------LKVVGNLPYNVASLI 111

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
           I+  +   D     V ++Q+E A +L        +   +++FV  + +  Y   VP   F
Sbjct: 112 IENTVYNKDCVPLAVFMVQKEVAEKLQG----KKDTGWLSVFVRTFYDVNYVMTVPPRFF 167

Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
            P PKV +AV+     +      V   K++   ++  F  +RK+LRK +         E+
Sbjct: 168 VPPPKVQSAVIKLVKNEK---FPVKDLKNYKKFLTKIFQNRRKVLRKKIP--------EE 216

Query: 354 ALGDVGLPATSRPEELTLDDFVKLHNLI 381
            L + G+   +R E+L+L+DF KL+ LI
Sbjct: 217 LLKEAGINPDARVEQLSLEDFFKLYRLI 244

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Length = 271

 Score =  204 bits (522), Expect = 5e-64
 Identities = 84/282 (29%), Positives = 141/282 (50%), Gaps = 25/282 (8%)

Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
            +++AL  + G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL 
Sbjct: 8   QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLE 66

Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
           AGA V AIEKD  +  ++ E  + +  ++++ +D +          + +          +
Sbjct: 67  AGAEVTAIEKDLRLRPVLEETLSGLP-VRLVFQDALLYPWE----EVPQGS-------LL 114

Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
           VAN+P++I+T ++ +LL  G   + +V L+Q+E A R+   P   T  Y  + + V  ++
Sbjct: 115 VANLPYHIATPLVTRLLKTGRF-ARLVFLVQKEVAERMTARPK--TPAYGVLTLRVAHHA 171

Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
             E  F +P   FFP PKV +++V      A D P        F +V +AF  +RK L  
Sbjct: 172 VAERLFDLPPGAFFPPPKVWSSLVRLTPTGALDDPG------LFRLVEAAFGKRRKTLLN 225

Query: 341 SLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
           +L         +E+AL  +GLP   R EEL L+ F +L   +
Sbjct: 226 ALAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Length = 353

 Score =  154 bits (390), Expect = 1e-43
 Identities = 48/313 (15%), Positives = 93/313 (29%), Gaps = 54/313 (17%)

Query: 115 PRKSLGQHYMLNSEINDQ------LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TV 166
            +   G  Y+ N  + ++      L       E   VL++ PG G  + +  N       
Sbjct: 26  LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 85

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS---LFERRKSSSGFA---- 219
             +EK   +   +  +F     L++L+ D       S+++    +F     SS       
Sbjct: 86  SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 144

Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
             VAN+    S  +I Q L               +++L +   TA +L+           
Sbjct: 145 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 203

Query: 272 INIFVNFYSEPE---------------------YKFKVPRTNFFPQPKVDAAVVTFKLKQ 310
            ++    +++ +                               +P      A+V      
Sbjct: 204 CSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDPID 263

Query: 311 ATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE--IEKALGDVGLPATSRPEE 368
                      ++  +       KR  L   +  L    +      + D  L     P +
Sbjct: 264 FD-----FDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQYFNSRITDKDLL-KKCPID 317

Query: 369 LTLDDFVKLHNLI 381
           LT D+F+ L  L 
Sbjct: 318 LTNDEFIYLTKLF 330

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
           + +      +    VLE G GTG+LTN LL AG TV  IE  + M  + +E+     +  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFS 92

Query: 191 VLQEDF 196
           + + DF
Sbjct: 93  ITEGDF 98

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
            I + +     + +G ++ +IG GTG  +  L N G  V A+E    M       
Sbjct: 21  RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH 75

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 10/56 (17%), Positives = 24/56 (42%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186
           ++        +  ++++ G G G     LL     +  I+ +   +  V+E+F S+
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSV 62

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKV 191
             A   + D+ +++G GTG +T  L      V AI+++   +        R    D + +
Sbjct: 27  CLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL 86

Query: 192 LQEDF 196
           ++ D 
Sbjct: 87  MEGDA 91

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
            +A     E  + LE+G GTG +   L+  G   +A++ D  M+ + R++ A +D
Sbjct: 31  ASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVD 85

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
           + L      Q G+ +L++G GTG LT  +  +GA VL  +    M+   R+ +  + 
Sbjct: 47  EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLH 103

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
            L    A     ++L++G GTG  T  L + G  +  +E    +V L R+   S+     
Sbjct: 32  VLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVT---F 88

Query: 192 LQEDF 196
                
Sbjct: 89  HHGTI 93

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           L  + +       LEIG   G+ T  L      +  I+     +G   +R      +   
Sbjct: 43  LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWA 102

Query: 193 QEDF 196
             D 
Sbjct: 103 ATDI 106

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 94  ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
           A +   + +  +       R P   +      + E+   L  +  +     VLE G G G
Sbjct: 3   AMNHSRESYDRLARELGGYRHPWARVLSGP--DPELTFDLWLSRLLTPQTRVLEAGCGHG 60

Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
                     A   A +    ++ L R      D
Sbjct: 61  PDAARFGPQAARWAAYDFSPELLKLARANAPHAD 94

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           L    A      VLE+  GTG  T  L      V A++    M+          D ++  
Sbjct: 38  LERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGL--DNVEFR 95

Query: 193 QEDF 196
           Q+D 
Sbjct: 96  QQDL 99

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 24/155 (15%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATVLAIEKDQHMVGLVRERFASI---- 186
           LA+  A      + ++G G G+    +      A V   E+ Q M    R          
Sbjct: 28  LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA 87

Query: 187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ-------- 236
              +++VL+ D     +     +  E       F  V+ N P+N + D            
Sbjct: 88  FSARIEVLEAD-----VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAH 142

Query: 237 ---LLPMGDIFSEVVLLLQEETALRLVEPSLRTSE 268
                   D       ++     L L+      +E
Sbjct: 143 AMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAE 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 68/213 (31%)

Query: 173 QHM---VGLVRERFASIDQLKVLQEDFVK---C-HIRSHMLSLFERRKSSSGFAKVVANI 225
            HM    G  + ++  I  L V ++ FV    C  ++    S+                 
Sbjct: 5   HHMDFETGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSIL---------------- 46

Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
               S + I  ++   D              LRL   +L + +   +  FV       YK
Sbjct: 47  ----SKEEIDHIIMSKD---------AVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYK 92

Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
           F                 +   +K     P++  T+ +       +N  +   + ++  L
Sbjct: 93  F-----------------LMSPIKTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 346 CTSLEIEKALGDVGLPATSRPEELTLDDFVKLH 378
              L++ +AL            EL     V + 
Sbjct: 135 QPYLKLRQAL-----------LELRPAKNVLID 156

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLK 190
           ++ A+   E   +L++G GTG L+  L+     AT   ++  + M+ + + RF    ++K
Sbjct: 36  VSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVK 95

Query: 191 VLQEDFVK 198
            ++ D+ K
Sbjct: 96  YIEADYSK 103

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           +LE+G   G  T+ L      +  +E  +  +   + R    D +  +   F
Sbjct: 46  LLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--DGITYIHSRF 95

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 99  DDYHATIKALNSKGRFPRKSLG--------QHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
             +H     L  +G    +  G           +  S +     AA A + G+++ +IG 
Sbjct: 5   HHHHHHSSGLVPRGSHMSQVPGRPESAFAHDGQITKSPMRALTLAALAPRRGELLWDIGG 64

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKVLQEDF 196
           G+GS++     AG   + IE     +  +++    +    +++ +Q   
Sbjct: 65  GSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA 113

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
                +  G  +LE+G G G     +L AG  V A +    +      R  
Sbjct: 36  KFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLG 86

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERFAS 185
           +   L        G  VLE G G G+ T +L   N  A + +I+     +   RE    
Sbjct: 25  LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           +E   VL+IG  +G+L   +   G  V  IE         +E+   +    +   D 
Sbjct: 31  KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDM 87

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
             +   A  +    VL+IG G G             + ++  + MV +    
Sbjct: 11  GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF 62

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
            A    G  +L+ G G G +   L   G  VL  + D  ++   ++ F    
Sbjct: 41  DAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEAR 92

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
           +  A   ++ + VL++G G G L   L + G   + ++ D+ +V   R   A
Sbjct: 44  ILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGA 95

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED 195
              + +G  VLEIG G G  T ++      V+++E ++ M     +  +  + +K++  D
Sbjct: 65  ELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGD 124

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 118 SLGQHYMLNSEINDQLAAA--AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           +     M +S     +       V++   VL++G G G  T  L   G   + ++  + M
Sbjct: 28  NQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVM 87

Query: 176 VGLVRERFASIDQLKVLQED 195
           +   +ER      L  ++ D
Sbjct: 88  IQKGKER-GEGPDLSFIKGD 106

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN--VLLNAGATVLAIEKDQHMVGLVRE 181
           +    +     +A A +  + + +IG G+GS+    +      T +  E  +     +  
Sbjct: 8   LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67

Query: 182 RFAS--IDQLKVLQEDF 196
              +  +     +Q+  
Sbjct: 68  NAINLGVSDRIAVQQGA 84

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 10/140 (7%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
            +A    + +   VLE G G+G+L  VL      V   E  +      ++        K 
Sbjct: 82  YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-----KF 136

Query: 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI--FSEVVL 249
                VK        +        + F  V    P++    V K L+    +        
Sbjct: 137 NLGKNVKFFNVDFKDAEVPEGIFHAAFVDVRE--PWHYLEKVHKSLMEGAPVGFLLPTAN 194

Query: 250 LLQEET-ALRLVEPSLRTSE 268
            + +   ++     +L   E
Sbjct: 195 QVIKLLESIENYFGNLEVVE 214

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 111 KGRFPRKSLGQHYMLNSEIN--DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATV 166
           +   P ++L   Y     +      AA    + G+  + IG G   LT +LL    G  V
Sbjct: 90  ESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRV 149

Query: 167 LAIEKDQHMVGLVRERFAS--IDQLKVLQED 195
             +E +  +  L R+      +D + V+  D
Sbjct: 150 NVVEIEPDIAELSRKVIEGLGVDGVNVITGD 180

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQE 194
           A         VLE+  G G LT   L+ G  V A+E    ++   R+R A        + 
Sbjct: 76  ATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRC 135

Query: 195 DFVKCHIRSHMLSLFER 211
             V+  + +   +L +R
Sbjct: 136 TLVQGDMSA--FALDKR 150

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
              +     VLEIG G+G  T +L +    V ++E+ + +    R R  ++D
Sbjct: 72  LLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD 123

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQ 188
            +L   AA++  + VL++  G G + N        V+A +  + ++ + R         Q
Sbjct: 27  AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ 86

Query: 189 LKVLQED 195
           ++ +Q D
Sbjct: 87  VEYVQGD 93

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198
           VL+IG G G    +    G   + ++ ++ M+     +        V++ D ++
Sbjct: 45  VLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIE 92

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185
           A  + +  IV++   G G+ T  L      V A +  +  +G   +R + 
Sbjct: 17  AEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSD 66

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 5/49 (10%), Positives = 16/49 (32%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
                    +++   G G+ T  L      V+ ++  +  + +  +   
Sbjct: 51  ELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT 99

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERF--ASIDQLKVL 192
            A ++ G  +LE+G G+G    ++       V  IE+   +V   +     A +  + V+
Sbjct: 86  IANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVI 145

Query: 193 QED 195
             D
Sbjct: 146 LGD 148

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-- 185
           +++     ++EG  VL++G G G     L         V AI+  + MV    E+     
Sbjct: 27  EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG 86

Query: 186 IDQLKVLQED 195
           +  ++VL+ +
Sbjct: 87  LKNVEVLKSE 96

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 137 AAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS 185
             + +   +++ G G G L  VL   L  G+    I+  + ++   RE F  
Sbjct: 18  WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASI--- 186
             L     ++ G  +L++G G+G +      + G T   I+         + R   +   
Sbjct: 26  ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS 85

Query: 187 DQLKVLQEDF 196
           +++  +  D 
Sbjct: 86  ERVHFIHNDA 95

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID 187
             L A   ++      ++G G G+ T +L +      +  I+ D  M+    +R  + +
Sbjct: 23  RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	100.0
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	100.0
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	100.0
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	100.0
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	100.0
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	100.0
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	100.0
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	100.0
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	100.0
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	100.0
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	100.0
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.57
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.55
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.52
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.46
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.45
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.42
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.39
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.38
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.38
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.37
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.35
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.35
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.34
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.34
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.33
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.32
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.32
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.3
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.29
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.29
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.29
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.29
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.29
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.29
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.28
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.27
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.26
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.26
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.26
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.26
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.26
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.25
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.25
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.25
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.25
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.24
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.24
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.24
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.23
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.22
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.22
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.22
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.21
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.21
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.21
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.21
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.2
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.19
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.19
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.19
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.19
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.19
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.18
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.18
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.18
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.18
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.17
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.17
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.17
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.17
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.17
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.17
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.17
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.17
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.17
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.17
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.17
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.17
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.16
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.16
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.16
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.16
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.16
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.16
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.16
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.15
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.15
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.15
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.15
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.14
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.14
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.14
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.14
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.14
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.14
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.13
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.13
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.13
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.12
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.12
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.12
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.11
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.11
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.11
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.11
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.11
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.11
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.11
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.1
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.1
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.1
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.1
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.1
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.1
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.1
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.09
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.09
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.09
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.09
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.08
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.08
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.08
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.08
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.07
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.07
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.07
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.07
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.06
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.06
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.05
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.05
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.05
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.05
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.04
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.04
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.03
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.03
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.03
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.03
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.02
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.02
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.02
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.02
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.02
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.02
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.01
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.01
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.0
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.0
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.0
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.0
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.0
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.0
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.0
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.0
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.0
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.99
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.98
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.98
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.98
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.98
3lkd_A	542	Type I restriction-modification system methyltrans	98.98
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.98
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.98
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.98
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.97
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.97
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.97
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.97
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.96
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.95
3ufb_A	530	Type I restriction-modification system methyltran	98.95
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.95
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.95
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.95
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.95
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.94
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.94
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.94
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.94
3ocj_A	305	Putative exported protein; structural genomics, PS	98.94
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.93
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.93
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.93
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.93
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.92
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.91
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.91
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.9
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.9
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.9
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.9
2o07_A	304	Spermidine synthase; structural genomics, structur	98.9
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.89
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.89
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.89
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.88
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.87
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.87
3khk_A	544	Type I restriction-modification system methylation	98.87
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.87
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.87
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.87
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.86
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.86
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.85
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.85
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.85
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.85
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.84
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.84
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.84
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.84
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.83
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.83
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.83
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.82
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.82
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.81
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.81
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.8
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.8
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.79
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.79
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.79
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.78
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.77
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.77
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.76
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.76
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.75
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.75
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.74
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.74
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.73
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.73
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.73
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.72
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.72
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.68
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.66
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.66
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.65
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.63
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.61
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.59
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.58
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.58
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.57
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.56
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.55
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.55
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.55
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.53
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.53
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.47
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.47
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.45
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.44
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.43
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.38
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.36
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.36
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.35
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.3
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.24
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.23
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.2
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.18
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.14
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.13
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.09
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.05
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.97
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.97
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.95
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.93
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.9
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.88
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.81
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.77
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.76
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.49
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.38
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.38
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.36
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.28
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.04
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.02
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.98
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.93
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	96.9
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.82
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.74
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.7
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.56
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.53
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.52
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.26
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.17
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.06
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.47
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	95.21
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.19
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.95
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.38
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	94.11
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	92.96
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	92.68
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	92.61
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	92.53
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.42
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	92.34
3r8n_M	114	30S ribosomal protein S13; protein biosynthesis, R	92.3
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.07
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.04
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	91.84
3imf_A	257	Short chain dehydrogenase; structural genomics, in	91.83
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.83
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	91.59
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	91.52
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.52
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	91.48
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	91.45
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.34
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.32
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	91.2
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.14
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	91.11
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.05
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	90.95
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	90.79
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.74
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	90.7
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	90.43
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	90.39
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	90.33
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	90.31
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	90.21
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	90.2
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	90.2
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	90.07
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	89.98
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	89.97
2vqe_M	126	30S ribosomal protein S13, 30S ribosomal protein S	89.95
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	89.89
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	89.83
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	89.71
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	89.71
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	89.68
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.67
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	89.61
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	89.55
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	89.51
3j20_O	148	30S ribosomal protein S13P; archaea, archaeal, KIN	89.51
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	89.4
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	89.36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.33
2xzm_M	155	RPS18E; ribosome, translation; 3.93A {Tetrahymena	89.31
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	89.31
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	89.28
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	89.26
1xkq_A	280	Short-chain reductase family member (5D234); parra	89.22
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	89.22
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	89.08
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	89.08
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	89.04
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	89.03
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	89.03
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.02
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	89.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	88.99
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	88.99
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	88.83
3iz6_M	152	40S ribosomal protein S18 (S13P); eukaryotic ribos	88.81
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	88.78
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	88.76
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	88.7
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	88.66
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	88.52
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	88.49
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	88.46
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.44
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	88.42
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	88.4
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.38
3cxt_A	291	Dehydrogenase with different specificities; rossma	88.34
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	88.33
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	88.33
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	88.33
3rih_A	293	Short chain dehydrogenase or reductase; structural	88.32
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	88.29
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	88.24
4eye_A	342	Probable oxidoreductase; structural genomics, niai	88.23
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	88.06
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	88.06
4dqx_A	277	Probable oxidoreductase protein; structural genomi	88.02
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	88.01
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	88.01
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	87.99
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	87.95
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	87.95
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	87.94
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	87.88
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	87.88
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	87.8
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	87.73
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	87.6
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	87.58
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	87.56
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	87.53
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	87.41
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	87.39
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	87.33
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	87.31
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	87.3
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	87.24
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	87.22
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	87.22
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	87.16
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	87.14
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	87.11
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	87.11
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	87.05
3u5c_S	146	40S ribosomal protein S18-A, 40S ribosomal protein	87.03
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	86.98
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.97
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	86.95
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	86.88
1xhl_A	297	Short-chain dehydrogenase/reductase family member	86.85
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	86.82
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	86.81
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	86.8
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	86.79
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	86.78
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	86.77
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	86.76
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.64
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	86.57
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	86.5
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	86.49
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	86.45
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	86.45
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	86.42
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	86.33
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	86.21
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	86.17
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	86.16
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	86.11
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	86.09
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	86.06
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	85.99
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	85.97
1spx_A	278	Short-chain reductase family member (5L265); paral	85.95
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	85.93
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	85.83
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	85.72
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	85.71
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	85.6
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	85.59
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.51
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	85.29
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	85.2
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	85.2
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	85.06
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	85.05
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	85.03
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	84.9
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	84.59
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	84.58
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	84.51
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	84.48
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	84.41
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	84.4
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	84.31
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	84.27
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	84.26
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	84.25
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	84.22
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.19
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	84.09
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	83.92
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	83.9
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	83.84
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	83.79
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	83.68
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	83.63
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	83.58
1xq1_A	266	Putative tropinone reducatse; structural genomics,	83.53
1id1_A	153	Putative potassium channel protein; RCK domain, E.	83.51
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	83.4
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	83.23
4g65_A	461	TRK system potassium uptake protein TRKA; structur	83.23
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	83.09

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=100.00  E-value=1e-55  Score=418.05  Aligned_cols=262  Identities=31%  Similarity=0.488  Sum_probs=243.1

Q ss_pred             hHHHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHH
Q 016715          101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR  180 (384)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~  180 (384)
                      ...+.+.+..+++++++.|||||+.|+.++++|++.+++.++ +|||||||+|.+|..|++.+++|+|+|+|++|++.++
T Consensus         7 ~~~~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~   85 (271)
T 3fut_A            7 PQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLE   85 (271)
T ss_dssp             HHHHHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred             HHHHHHHHHhcCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            356677889999999999999999999999999999999989 9999999999999999999999999999999999999


Q ss_pred             HHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHh
Q 016715          181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV  260 (384)
Q Consensus       181 ~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~  260 (384)
                      +++.. ++++++++|++++++++.           ..+|.||+|+||+++++++.+++.. ..+..+++|+|+|+|+|++
T Consensus        86 ~~~~~-~~v~vi~~D~l~~~~~~~-----------~~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~QkEva~Rl~  152 (271)
T 3fut_A           86 ETLSG-LPVRLVFQDALLYPWEEV-----------PQGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQKEVAERMT  152 (271)
T ss_dssp             HHTTT-SSEEEEESCGGGSCGGGS-----------CTTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEHHHHHHHT
T ss_pred             HhcCC-CCEEEEECChhhCChhhc-----------cCccEEEecCcccccHHHHHHHhcC-CCCCEEEEEeeeeeeeecc
Confidence            98864 589999999999987641           3579999999999999999999987 7789999999999999999


Q ss_pred             cCCCCCCCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHH
Q 016715          261 EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK  340 (384)
Q Consensus       261 ~a~pg~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~  340 (384)
                       |.||++.||++||++|+++++++++.|++++|+|+|+|||+||+|+|++.+.      .+.|+.+++++|.||||+|+|
T Consensus       153 -A~pg~k~yg~lSv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~p~~~~~------~~~~~~~v~~~F~~rrKtL~n  225 (271)
T 3fut_A          153 -ARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGALD------DPGLFRLVEAAFGKRRKTLLN  225 (271)
T ss_dssp             -CCTTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSCCC------CHHHHHHHHHHTSSTTSCHHH
T ss_pred             -cCCCCCcccHHHHHHHHHeeEEEEEEEChHHeECCCCCcEEEEEEEECCCCc------HHHHHHHHHHHHhcCCcHHHH
Confidence             8999999999999999999999999999999999999999999999987632      478999999999999999999


Q ss_pred             HHhhh-cChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          341 SLQHL-CTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       341 ~l~~~-~~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      +|+.+ ++++.+.++|+++|+++++||++||++||++|++.+.+
T Consensus       226 ~L~~~~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~  269 (271)
T 3fut_A          226 ALAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG  269 (271)
T ss_dssp             HHHHTTCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred             HHHhhcCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence            99987 47788899999999999999999999999999998753

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=3.9e-55  Score=411.03  Aligned_cols=253  Identities=26%  Similarity=0.493  Sum_probs=225.1

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~  193 (384)
                      ++++.|||||+.|+.++++|++.+++.++++|||||||+|.+|..|++.+.+|+|+|+|++|++.+++++...+++++++
T Consensus         2 ~~~k~~GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~   81 (255)
T 3tqs_A            2 PMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQ   81 (255)
T ss_dssp             -------CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEE
T ss_pred             CCCCcCCcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999987667999999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccce
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~ls  273 (384)
                      +|++++++++.+        ..+.+| ||+|+||+++++++.++++....+..+++|+|+|+|+|++ |.||++.||++|
T Consensus        82 ~D~~~~~~~~~~--------~~~~~~-vv~NlPY~is~~il~~ll~~~~~~~~~~lm~QkEva~Rl~-a~pg~k~yg~ls  151 (255)
T 3tqs_A           82 NDALQFDFSSVK--------TDKPLR-VVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRIT-AEVGSHDYGRLS  151 (255)
T ss_dssp             SCTTTCCGGGSC--------CSSCEE-EEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEHHHHHHHT-CCTTSTTCSHHH
T ss_pred             cchHhCCHHHhc--------cCCCeE-EEecCCcccCHHHHHHHHhCCCChheEEEEEeHHHHHHhh-CCCCCCccchhh
Confidence            999999876421        123455 9999999999999999998777889999999999999999 899999999999


Q ss_pred             eeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEc-CCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHH
Q 016715          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK-QATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE  352 (384)
Q Consensus       274 vl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~-~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~  352 (384)
                      |++|+++++++++.|++++|+|+|+|||+||+|+|+ +.+..  ..+.+.|+.+++++|.||||+|+|+|+.+++.+   
T Consensus       152 v~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~~~~~~~~~--~~~~~~~~~~v~~~F~~rrK~l~~~L~~~~~~~---  226 (255)
T 3tqs_A          152 VMAQYFCDNTYLFTVSPQAFTPPPRVESAIIRLIPRHNFTPV--AKNLDQLSHVVKEAFSYRRKTVGNALKKLINPS---  226 (255)
T ss_dssp             HHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCSCSSC--CSCHHHHHHHHHHHHHSTTSCHHHHTTTTCCGG---
T ss_pred             heeeeeEEEEEEEEEChHHccCCCCCeEEEEEEEECCCCCCc--cccHHHHHHHHHHHHHccChHHHHHHhhhCCHH---
Confidence            999999999999999999999999999999999998 65433  346789999999999999999999999987654   


Q ss_pred             HHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          353 KALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       353 ~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                       .|+++|+++++||++||++||++|++.++
T Consensus       227 -~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~  255 (255)
T 3tqs_A          227 -QWPLLEINPQLRPQELTVEDFVKISNILN  255 (255)
T ss_dssp             -GTGGGTCCTTSCGGGSCHHHHHHHHHHHC
T ss_pred             -HHHHCCcCCCCCceeCCHHHHHHHHHHhC
Confidence             46889999999999999999999999763

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=100.00  E-value=2.5e-54  Score=410.52  Aligned_cols=258  Identities=26%  Similarity=0.489  Sum_probs=228.3

Q ss_pred             CCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCc----EEEEeCCHHHHHHHHHHhcCC
Q 016715          111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASI  186 (384)
Q Consensus       111 ~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~----V~avE~d~~~~~~a~~~~~~~  186 (384)
                      .++++++.|||||+.|+.++++|++.+++.++++|||||||+|.+|..|++.+.+    |+|+|+|++|++.++++.  .
T Consensus        12 ~~~~~~k~~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~   89 (279)
T 3uzu_A           12 QGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G   89 (279)
T ss_dssp             ------CCCSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G
T ss_pred             cCCCccccCCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C
Confidence            3678999999999999999999999999999999999999999999999998776    999999999999999984  4


Q ss_pred             CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCC
Q 016715          187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT  266 (384)
Q Consensus       187 ~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~  266 (384)
                      ++++++++|++++++++.+.+      .....+.||+|+||+++++++.+|++....+..+++|+|+|+|+|++ |.||+
T Consensus        90 ~~v~~i~~D~~~~~~~~~~~~------~~~~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~QkEva~Rl~-A~pg~  162 (279)
T 3uzu_A           90 ELLELHAGDALTFDFGSIARP------GDEPSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMV-AEPGT  162 (279)
T ss_dssp             GGEEEEESCGGGCCGGGGSCS------SSSCCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEHHHHHHHT-CCTTS
T ss_pred             CCcEEEECChhcCChhHhccc------ccCCceEEEEccCccccHHHHHHHHhccCCccEEEEEeeHHHHHHHh-CCCCC
Confidence            689999999999988753210      00145789999999999999999998877889999999999999999 89999


Q ss_pred             CCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhc
Q 016715          267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC  346 (384)
Q Consensus       267 ~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~  346 (384)
                      +.||++||++|+++++++++.|++++|+|+|+|||+||+|+|++.+..+ ..+.+.|+.+++++|.||||+|+|+|+.++
T Consensus       163 k~yg~lSv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~p~~~~~~~-~~~~~~~~~~v~~~F~~rrK~l~n~L~~~~  241 (279)
T 3uzu_A          163 KAFSRLSVMLQYRYVMDKLIDVPPESFQPPPKVDSAIVRMIPHAPHELP-AVDPAVLGEVVTAAFSQRRKMLRNTLGGYR  241 (279)
T ss_dssp             TTCCHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCGGGSC-SSCHHHHHHHHHHHGGGTTSBHHHHTGGGT
T ss_pred             CcccHHHHHHhhheEEEEEEEEChHHccCCCCCeEEEEEEEecCCCCCC-cccHHHHHHHHHHHHhccChHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999998864333 346789999999999999999999999886


Q ss_pred             ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          347 TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       347 ~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      +    .++|+++|+++++||++||++||++|++.+.
T Consensus       242 ~----~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~  273 (279)
T 3uzu_A          242 D----LVDFDALGFDLARRAEDIGVDEYVRVAQAVA  273 (279)
T ss_dssp             T----TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred             C----HHHHHHCCcCCCCCceeCCHHHHHHHHHHHH
Confidence            5    2457889999999999999999999999875

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=100.00  E-value=2e-51  Score=392.99  Aligned_cols=261  Identities=28%  Similarity=0.448  Sum_probs=223.9

Q ss_pred             HHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 016715          105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       105 ~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~  184 (384)
                      ......+++++++.|||||++++.++++|++.+.+.++++|||||||+|.+|..|++.+.+|+|||+|+++++.+++++.
T Consensus        14 ~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~   93 (295)
T 3gru_A           14 LVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE   93 (295)
T ss_dssp             ----------------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH
T ss_pred             hchhHhcCCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCC
Q 016715          185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSL  264 (384)
Q Consensus       185 ~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~p  264 (384)
                      ..++++++++|++++++++            ..||.|++|+||+++++++.++++.+  +..+++|+|+|++.|++ +.|
T Consensus        94 ~~~~v~vi~gD~l~~~~~~------------~~fD~Iv~NlPy~is~pil~~lL~~~--~~~~~lm~Q~eva~Rl~-a~p  158 (295)
T 3gru_A           94 LYNNIEIIWGDALKVDLNK------------LDFNKVVANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMV-AAA  158 (295)
T ss_dssp             HCSSEEEEESCTTTSCGGG------------SCCSEEEEECCGGGHHHHHHHHHHHC--CSEEEEEEEHHHHHHHH-CCT
T ss_pred             cCCCeEEEECchhhCCccc------------CCccEEEEeCcccccHHHHHHHHhcc--cceEEEeeecccccEEE-ecC
Confidence            6679999999999988754            46899999999999999999998854  67899999999999999 899


Q ss_pred             CCCCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhh
Q 016715          265 RTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH  344 (384)
Q Consensus       265 g~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~  344 (384)
                      |++.|+++|+++|+++++++++.|++..|+|+|+|||+||+|+|++.+ . ...+.+.|+.+++++|.||||+|+|+|+.
T Consensus       159 g~k~yg~Lsv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~~~~~~-~-~~~~~~~~~~~v~~~F~~rrK~l~n~L~~  236 (295)
T 3gru_A          159 GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGK-Y-HIENENFFDDFLRAIFQHRNKSVRKALID  236 (295)
T ss_dssp             TSTTCSHHHHHHHTTEEEEEEEEECGGGEESCCSSCEEEEEEEECHHH-H-CCSCHHHHHHHHHHHHTTTTSBHHHHHHH
T ss_pred             CCcchhHHHHHHHhhccEEEEEEECcccCCCcCCCeEEEEEEEcCCCC-C-CcccHHHHHHHHHHHHccCchHHHHHHhh
Confidence            999999999999999999999999999999999999999999998532 1 23467889999999999999999999997


Q ss_pred             hc-----ChHHHHHHHHhC-----CCCC--CCCCCcCCHHHHHHHHHHHH
Q 016715          345 LC-----TSLEIEKALGDV-----GLPA--TSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       345 ~~-----~~~~~~~~l~~~-----~l~~--~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      ++     +++.+.++|+++     |+++  ++|||+||++||++|++.+.
T Consensus       237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~  286 (295)
T 3gru_A          237 SSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFY  286 (295)
T ss_dssp             TGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHH
T ss_pred             hhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHH
Confidence            53     466778888887     7777  99999999999999999874

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=100.00  E-value=2.4e-50  Score=377.94  Aligned_cols=248  Identities=25%  Similarity=0.437  Sum_probs=221.5

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCc--EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc
Q 016715          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT--VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (384)
Q Consensus       121 q~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~--V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~  198 (384)
                      |||++|+.++++|++.+.+.++++|||||||+|.+|. +. .+.+  |+|+|+|+.|++.+++++...++++++++|+.+
T Consensus         1 QnfL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~   78 (252)
T 1qyr_A            1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             CCCcCCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhh
Confidence            8999999999999999999999999999999999999 65 4677  999999999999999987655689999999999


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeeee
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF  278 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~  278 (384)
                      +++++.+. +      .+.++.||+|+||+++++++.++++....+..+++|+|+|+++|++ +.||++.||++|+++|+
T Consensus        79 ~~~~~~~~-~------~~~~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~QkEva~Rl~-a~pG~k~yg~lsv~~q~  150 (252)
T 1qyr_A           79 FNFGELAE-K------MGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQY  150 (252)
T ss_dssp             CCHHHHHH-H------HTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHH-CCTTSTTCSHHHHHHHH
T ss_pred             CCHHHhhc-c------cCCceEEEECCCCCccHHHHHHHHhcCCCcceEEEEEeHHHHHHhc-CCCCCccccHHHHHHHH
Confidence            98765321 0      1246899999999999999999888666788999999999999999 89999999999999999


Q ss_pred             cccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHHHHHHhC
Q 016715          279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDV  358 (384)
Q Consensus       279 ~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~~l~~~  358 (384)
                      +++++.++.|+++.|+|+|+|||+||+|+|++.+..+ ..+.+.|+.+++++|.||||+|+|+|+.+++    .++|+.+
T Consensus       151 ~~~~~~~~~v~~~~F~P~PkV~Savv~l~~~~~~~~~-~~~~~~~~~~v~~~F~~rrK~l~n~l~~~~~----~~~l~~~  225 (252)
T 1qyr_A          151 YCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLFS----VEVLTGM  225 (252)
T ss_dssp             HEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCSSC-CSCHHHHHHHHHHHHHTTTSBHHHHTTTTCC----HHHHHHT
T ss_pred             HheEEEEEEEChHHccCCCCceEEEEEEEEcCcCCCC-ccCHHHHHHHHHHHHHhCCcHHHHHHhhhhh----HHHHHHc
Confidence            9999999999999999999999999999998764333 2467889999999999999999999998765    4568899


Q ss_pred             CCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          359 GLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       359 ~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      |++++.|+++||++||++|++.+.+
T Consensus       226 ~i~~~~R~e~Ls~~~f~~l~~~~~~  250 (252)
T 1qyr_A          226 GIDPAMRAENISVAQYCQMANYLAE  250 (252)
T ss_dssp             TCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred             CCCCCCChHHCCHHHHHHHHHHHHh
Confidence            9999999999999999999998753

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=100.00  E-value=2.1e-50  Score=377.94  Aligned_cols=243  Identities=30%  Similarity=0.489  Sum_probs=218.7

Q ss_pred             CCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCCCCeEE
Q 016715          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKV  191 (384)
Q Consensus       113 ~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~~~v~~  191 (384)
                      +++++.|||||+.++.++++|++.+.+.++++|||||||+|.+|..|++.+ .+|+|+|+|+.+++.++++  ..+++++
T Consensus         3 ~~~~k~~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~~   80 (249)
T 3ftd_A            3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLEV   80 (249)
T ss_dssp             -----CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEEE
T ss_pred             CCCCCcccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeEE
Confidence            578999999999999999999999999999999999999999999999995 7999999999999999988  3468999


Q ss_pred             EEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCccc
Q 016715          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP  271 (384)
Q Consensus       192 ~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~  271 (384)
                      +++|++++++++.          .+ ...|++|+||+++++++.++++.+..+..+++|+|+|+++|++ +   ++.||+
T Consensus        81 i~~D~~~~~~~~~----------~~-~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Qkeva~Rl~-a---~k~yg~  145 (249)
T 3ftd_A           81 INEDASKFPFCSL----------GK-ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQ-G---KKDTGW  145 (249)
T ss_dssp             ECSCTTTCCGGGS----------CS-SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEEHHHHHHHH-T---SSCCCH
T ss_pred             EEcchhhCChhHc----------cC-CcEEEEECchhccHHHHHHHHhcCCCCceEEEEEeHHHHHHhh-c---cccccH
Confidence            9999999987652          12 4589999999999999999998877889999999999999999 5   899999


Q ss_pred             ceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHH
Q 016715          272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI  351 (384)
Q Consensus       272 lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~  351 (384)
                      +||++|+++++++++.|++++|+|+|+|||+||+|+|++.+..+   +.+.|+.+++++|.||||+|+|+|+.+      
T Consensus       146 lsv~~q~~~~~~~~~~v~~~~F~P~PkV~savv~l~~~~~~~~~---~~~~~~~~v~~~F~~rrk~l~~~l~~~------  216 (249)
T 3ftd_A          146 LSVFVRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFPVK---DLKNYKKFLTKIFQNRRKVLRKKIPEE------  216 (249)
T ss_dssp             HHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCCSCCC---CHHHHHHHHHHHHSSTTSCGGGTSCHH------
T ss_pred             HHHHHHhHEEEEEEEEEChHHccCCCCCeEEEEEEEECCCCCcc---hHHHHHHHHHHHHhCcChhHHHHHHHH------
Confidence            99999999999999999999999999999999999998765332   378899999999999999999999875      


Q ss_pred             HHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          352 EKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       352 ~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                        .|+..|+++++||++||++||++|++.+.+
T Consensus       217 --~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~  246 (249)
T 3ftd_A          217 --LLKEAGINPDARVEQLSLEDFFKLYRLIED  246 (249)
T ss_dssp             --HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred             --HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence              678899999999999999999999998864

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=100.00  E-value=1.4e-46  Score=366.54  Aligned_cols=261  Identities=17%  Similarity=0.161  Sum_probs=217.3

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCC------CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~------~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      ++++.||||||.|++++++|++.+++.+      ++.|||||+|.|.+|..|++.  +.+|++||+|+++++.+++.+ .
T Consensus        25 ~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~  103 (353)
T 1i4w_A           25 KLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E  103 (353)
T ss_dssp             SSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T
T ss_pred             CCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c
Confidence            6899999999999999999999998764      589999999999999999986  569999999999999999887 4


Q ss_pred             CCCeEEEEccccccc-hhhhhhh--HHh--hhcc--CCCcceEeeccCccccHHHHHHhcccC--------CCeeEEEEE
Q 016715          186 IDQLKVLQEDFVKCH-IRSHMLS--LFE--RRKS--SSGFAKVVANIPFNISTDVIKQLLPMG--------DIFSEVVLL  250 (384)
Q Consensus       186 ~~~v~~~~gD~~~~~-~~~~~~~--~~~--~~~~--~~~~d~Vv~NlPy~i~~~il~~L~~~g--------~~~~~~~~~  250 (384)
                      .++++++++|+++++ +.+.+.+  ++.  ..++  .+....||+|+||+++++++.+++...        ..+..+++|
T Consensus       104 ~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~~m~lm  183 (353)
T 1i4w_A          104 GSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLW  183 (353)
T ss_dssp             TSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEEEEEE
T ss_pred             CCCEEEEECCccchhhHHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHhccccccccccCcceEEEE
Confidence            579999999998876 3321110  000  0000  011348999999999999999888631        135689999


Q ss_pred             eeHHHHHHHhcCCCCCCCcccceeeeeecccceEEEEeC---CCCCCCCC----------CC--------ceEEEEEEEc
Q 016715          251 LQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP---RTNFFPQP----------KV--------DAAVVTFKLK  309 (384)
Q Consensus       251 ~qke~a~rl~~a~pg~~~y~~lsvl~q~~~~~~~~~~v~---~~~F~P~P----------kV--------~s~vv~l~~~  309 (384)
                      +|+|+|+|++ |.||++.||++||++|+++++++++.++   +.+|+|+|          +|        ||+||+|+|+
T Consensus       184 vQkEvA~Rl~-A~PGsk~yg~LSV~~q~~~~v~~l~~v~~~~~~~F~P~P~~k~~p~~~PkV~~~~~~~~dSaVV~l~p~  262 (353)
T 1i4w_A          184 MPSTTARKLL-ARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDPI  262 (353)
T ss_dssp             EEHHHHHHHH-CCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCGGGBSSCSCCCEEEEEEEEC
T ss_pred             eEHHHHHHhc-CCCCCccccHHHHHHHHHcceEEEEecCCccCCCccCCCcccccccccCcccccCCCCCceEEEEEEEC
Confidence            9999999999 8999999999999999999999999999   99999998          88        9999999998


Q ss_pred             CCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChH--HHHHHHH-hCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          310 QATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL--EIEKALG-DVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~--~~~~~l~-~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      +.   +  .+.+.|+.++|++|.||||+|+|+|+.+++..  .+.+.|+ ..++  ++|+++||++||++|++.+.+
T Consensus       263 ~~---~--~~~~~~~~vvr~~F~qRRKtL~n~L~~l~~~~~~~l~~~l~~~~~i--~~R~e~Ls~e~f~~L~~~~~~  332 (353)
T 1i4w_A          263 DF---D--FDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQYFNSRITDKDLL--KKCPIDLTNDEFIYLTKLFME  332 (353)
T ss_dssp             CC---C--SCHHHHHHHHHHHHTTTTSCTTTGGGGSSTTHHHHHTTTCCCCTTT--SSCGGGCCHHHHHHHHHHHHT
T ss_pred             CC---c--ccHHHHHHHHHHHHhhchHHHHHHHHhhccccHHHHHHHhhhhcCc--ccChhhCCHHHHHHHHHHHHh
Confidence            75   1  35788999999999999999999999876532  2333344 5666  699999999999999998753

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=100.00  E-value=2.2e-43  Score=336.68  Aligned_cols=249  Identities=31%  Similarity=0.493  Sum_probs=219.9

Q ss_pred             cccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEE
Q 016715          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVL  192 (384)
Q Consensus       116 ~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~  192 (384)
                      ++.|||||+.++.+++.|++.+.+.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...   ++++++
T Consensus         3 ~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~   82 (285)
T 1zq9_A            3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVL   82 (285)
T ss_dssp             -----CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred             CCCCCcCccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            57899999999999999999999989999999999999999999999999999999999999999987643   479999


Q ss_pred             EccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccc
Q 016715          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI  272 (384)
Q Consensus       193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~l  272 (384)
                      ++|+.+.++              +.+|.|++|+||+++++++.+++++...+..+++|+|+|+++|++ +.||++.|+++
T Consensus        83 ~~D~~~~~~--------------~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~v-lkPGg~~y~~l  147 (285)
T 1zq9_A           83 VGDVLKTDL--------------PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLV-AKPGDKLYCRL  147 (285)
T ss_dssp             ESCTTTSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHH-CCTTCTTCSHH
T ss_pred             Ecceecccc--------------hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHh-cCCCCcccchh
Confidence            999998754              368999999999999999999988777788999999999999998 79999999999


Q ss_pred             eeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhh-------
Q 016715          273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-------  345 (384)
Q Consensus       273 svl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~-------  345 (384)
                      |+..|++++++..+.|++..|+|+|+|||++++++|++.+  + ..+.+.|+.+++.+|.+|||+|+|+|+..       
T Consensus       148 sv~~~~~~~~~~~~~v~~~~F~P~p~v~savv~~~~~~~~--~-~~~~~~~~~~~~~~F~~rrK~l~~~l~~~~~~~~~~  224 (285)
T 1zq9_A          148 SINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPP--P-PINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLE  224 (285)
T ss_dssp             HHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSSC--C-SCCHHHHHHHHHHHHTTTTSBHHHHTTSHHHHHHHH
T ss_pred             hhhhhhhhheeeeEEEChhhCCCCCCCcEEEEEEEECCCC--C-CCCHHHHHHHHHHHHhcchhHHHHHhchhcchhhhh
Confidence            9999999999999999999999999999999999998753  1 23568899999999999999999998641       


Q ss_pred             ------c-------C-----hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          346 ------C-------T-----SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       346 ------~-------~-----~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                            +       +     ++.+.++|+++|++ ++||++||++||++|++.+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~~  279 (285)
T 1zq9_A          225 KNYRIHCSVHNIIIPEDFSIADKIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA  279 (285)
T ss_dssp             HHHHHHHHHHTCCCCTTCCHHHHHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhcccccccchhhHHHHHHHHHhCCCC-CCChhhCCHHHHHHHHHHHHH
Confidence                  0       1     34567889999997 789999999999999998864

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=100.00  E-value=5.4e-43  Score=326.71  Aligned_cols=238  Identities=23%  Similarity=0.350  Sum_probs=204.6

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~  193 (384)
                      ++++.|||||+.++.+++.|++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...+++++++
T Consensus         3 ~~~k~~gQ~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~   82 (244)
T 1qam_A            3 EKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLN   82 (244)
T ss_dssp             -------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEEC
T ss_pred             CCCccCCccccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEE
Confidence            57899999999999999999999998889999999999999999999999999999999999999999987657999999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccce
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~ls  273 (384)
                      +|+.++++.+            +....||+|+||+++++++.+++.. .....+++|+|+|++.|++ +.+     |+++
T Consensus        83 ~D~~~~~~~~------------~~~~~vv~nlPy~~~~~~l~~~l~~-~~~~~~~lm~q~e~a~rll-~~~-----G~l~  143 (244)
T 1qam_A           83 KDILQFKFPK------------NQSYKIFGNIPYNISTDIIRKIVFD-SIADEIYLIVEYGFAKRLL-NTK-----RSLA  143 (244)
T ss_dssp             CCGGGCCCCS------------SCCCEEEEECCGGGHHHHHHHHHHS-CCCSEEEEEEEHHHHHHHT-CTT-----SHHH
T ss_pred             ChHHhCCccc------------CCCeEEEEeCCcccCHHHHHHHHhc-CCCCeEEEEEEHHHHHHHh-cCC-----cchh
Confidence            9999987642            1233799999999999999998875 3466789999999999998 444     6899


Q ss_pred             eeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHHH
Q 016715          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK  353 (384)
Q Consensus       274 vl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~  353 (384)
                      ++++++++++.++.++++.|+|+|+|+|++++++|++. ..+ ..+.+.|+.+++.+|.||||+|+|+++          
T Consensus       144 v~~~~~~~~~~~~~v~~~~F~P~p~v~s~vv~~~~~~~-~~~-~~~~~~~~~~v~~~F~~rrk~l~~~~~----------  211 (244)
T 1qam_A          144 LFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKKS-RIS-HKDKQKYNYFVMKWVNKEYKKIFTKNQ----------  211 (244)
T ss_dssp             HHHTTTEEEEEEEEECGGGSBSCCSSCEEEEEEEECCC-SSC-GGGHHHHHHHHHHHHTTCGGGTCCHHH----------
T ss_pred             HHhhhhEeEEEEEEEChhhccCCCCceEEEEEEEECCC-CCC-cccHHHHHHHHHHHHhhccccccchHH----------
Confidence            99999999999999999999999999999999999764 222 235678999999999999999999873          


Q ss_pred             HHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          354 ALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       354 ~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      +++.+|++++.||++||++||++|++.+.
T Consensus       212 ~~~~~~~~~~~r~e~l~~~~~~~l~~~~~  240 (244)
T 1qam_A          212 FNNSLKHAGIDDLNNISFEQFLSLFNSYK  240 (244)
T ss_dssp             HHHHHHHHTCSCTTSCCHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCceeCCHHHHHHHHHHHH
Confidence            35566888999999999999999998875

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=3.2e-42  Score=330.80  Aligned_cols=254  Identities=30%  Similarity=0.445  Sum_probs=214.4

Q ss_pred             CCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCC
Q 016715          111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQ  188 (384)
Q Consensus       111 ~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~  188 (384)
                      ++-.+++.|||||+.++.+++.+++.+.+.++++|||||||+|.+|..|++.+.+|+|+|+|+.+++.+++++..  .++
T Consensus        12 ~~~~~~k~~Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~   91 (299)
T 2h1r_A           12 SGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNN   91 (299)
T ss_dssp             -----------CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCC
T ss_pred             ccccchhccccceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            345788999999999999999999999998999999999999999999999988999999999999999998742  358


Q ss_pred             eEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCC
Q 016715          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSE  268 (384)
Q Consensus       189 v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~  268 (384)
                      ++++++|+.++++              +.+|.|++|+||+++++++.+++.....+..+++|+|+|++.|++ +.||+..
T Consensus        92 v~~~~~D~~~~~~--------------~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rll-a~~G~~~  156 (299)
T 2h1r_A           92 LEVYEGDAIKTVF--------------PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERML-ANVGDSN  156 (299)
T ss_dssp             EEC----CCSSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHT-CCTTSTT
T ss_pred             eEEEECchhhCCc--------------ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHh-cCCCCcc
Confidence            9999999998753              468999999999999999999888777888899999999999999 8999999


Q ss_pred             cccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhc--
Q 016715          269 YRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC--  346 (384)
Q Consensus       269 y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~--  346 (384)
                      |+.+++.++++++++.++.+++..|.|+|+|+|+++++.|++.+ .  ..+.+.|+.+++.+|.+|||+|+|+|+...  
T Consensus       157 y~~ls~~~~~~~~~~~~~~v~~~~F~p~p~V~s~vv~~~~~~~~-~--~~~~~~~~~~v~~~F~~rrKtl~~~l~~~~~~  233 (299)
T 2h1r_A          157 YSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKESS-F--LTNFDEWDNLLRICFSRKRKTLHAIFKRNAVL  233 (299)
T ss_dssp             CCHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECGGG-G--GSCHHHHHHHHHHHHTTTTSBHHHHHTSHHHH
T ss_pred             hhHHHHHHHHhhceEEEEEECchhcCCCCCCEEEEEEEEECCCC-C--CCCHHHHHHHHHHHHhhcchHHHHHhhhhhhh
Confidence            99999999999999999999999999999999999999998653 1  235788999999999999999999986321  


Q ss_pred             ---------------------C-hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          347 ---------------------T-SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       347 ---------------------~-~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                                           . ++.+.++|+.+|+++ +|+++||++||++|++.+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~~  291 (299)
T 2h1r_A          234 NMLEHNYKNWCTLNKQVPVNFPFKKYCLDVLEHLDMCE-KRSINLDENDFLKLLLEFNK  291 (299)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSSCHHHHHHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhcccccccccccchHHHHHHHHHhCCCCC-CChhhCCHHHHHHHHHHHHh
Confidence                                 1 345677899999975 79999999999999998864

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=100.00  E-value=2.6e-37  Score=288.07  Aligned_cols=238  Identities=22%  Similarity=0.370  Sum_probs=204.8

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~  193 (384)
                      ++++.+||||++++.+.+.+++.+.+.++++|||||||+|.++..+++.+.+|+|+|+|+.+++.++++....+++++++
T Consensus         2 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~   81 (245)
T 1yub_A            2 NKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIH   81 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECC
T ss_pred             CCCcccCCCCCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEE
Confidence            57899999999999999999999998889999999999999999999999999999999999999988776446899999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccce
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~ls  273 (384)
                      +|+.++++.+           .+.| .|++|+||+++++++.++..+ .......+|+|+|.+.|++ + ||    |+++
T Consensus        82 ~D~~~~~~~~-----------~~~f-~vv~n~Py~~~~~~~~~~~~~-~~~~~~~lm~q~e~a~rll-~-~~----G~l~  142 (245)
T 1yub_A           82 QDILQFQFPN-----------KQRY-KIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTL-D-IH----RTLG  142 (245)
T ss_dssp             SCCTTTTCCC-----------SSEE-EEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHH-C-GG----GSHH
T ss_pred             CChhhcCccc-----------CCCc-EEEEeCCccccHHHHHHHHhC-CCCCeEEEEeeHHHHHHHh-C-CC----Cchh
Confidence            9999987532           1356 899999999999998888764 3356788999999999999 3 33    6888


Q ss_pred             eeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHHH
Q 016715          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK  353 (384)
Q Consensus       274 vl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~  353 (384)
                      +..+.+++++..+.+++..|.|.|+|+|++|++++++. .++ ..+...|..+++.+|.+|||+|+|+++          
T Consensus       143 v~~~~~~~~~~~~~v~~~~f~P~p~v~s~~v~~~~~~~-~~~-~~~~~~~~~~~~~~f~~rrk~l~~~~~----------  210 (245)
T 1yub_A          143 LLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTT-DVP-DKYWKLYTYFVSKWVNREYRQLFTKNQ----------  210 (245)
T ss_dssp             HHTTTTBCCCEEEEECCTTSBSSCCSCEEEEEECBCSC-SSC-HHHHHHHHHHHHHHHHTCHHHHCSSSH----------
T ss_pred             hhheeheeEEEEEEECchhccCCCCceEEEEEEEECCC-CCC-cccHHHHHHHHHHHHhhcchhhhchHH----------
Confidence            99999999999999999999999999999999988543 222 123467999999999999999999873          


Q ss_pred             HHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          354 ALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       354 ~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      +++.++++++.|+++|+++||++|++.+.
T Consensus       211 ~~~~~~~~~~~r~~~l~~~~f~~l~~~~~  239 (245)
T 1yub_A          211 FHQAMKHAKVNNLSTITYEQVLSIFNSYL  239 (245)
T ss_dssp             HHHHHHHTTCSCTTSCCSHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCChhhCCHHHHHHHHHHHH
Confidence            24556677899999999999999998764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.57  E-value=4.2e-14  Score=127.00  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhhC-CCChHHHHHHHHhCCC---CCcc-------------cCCCcccCCHHHHHHHHHHhcCCCCCEEEEE
Q 016715           86 AASACIVCARSQ-DDDYHATIKALNSKGR---FPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (384)
Q Consensus        86 ~r~~mv~~~ir~-~~~~~~~~~~l~~~~~---~~~~-------------~~gq~fl~~~~~~~~il~~l~~~~~~~VLEI  148 (384)
                      .|..|+..+++. +...++..+++...+.   .+..             ..|+ ++..+.+...+++.+...++++||||
T Consensus         6 ~~~~~~~~~l~~~gv~~~~~~~~~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~vLdi   84 (210)
T 3lbf_A            6 RRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQ-TISQPYMVARMTELLELTPQSRVLEI   84 (210)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECTTSC-EECCHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHhCCHHHcCCcchhhhccCCCccccCCCC-EeCCHHHHHHHHHhcCCCCCCEEEEE
Confidence            356677778874 7888888888766432   1110             1233 66789999999999999999999999


Q ss_pred             cCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          149 GPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       149 G~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      |||+|.++..+++.+.+|+++|+++.+++.+++++..  .++++++++|+.+....+            +.||+|+++..
T Consensus        85 G~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~------------~~~D~i~~~~~  152 (210)
T 3lbf_A           85 GTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR------------APFDAIIVTAA  152 (210)
T ss_dssp             CCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG------------CCEEEEEESSB
T ss_pred             cCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC------------CCccEEEEccc
Confidence            9999999999999999999999999999999998864  348999999998865432            67999998754


Q ss_pred             c-cccHHHHHHhcccCCC
Q 016715          227 F-NISTDVIKQLLPMGDI  243 (384)
Q Consensus       227 y-~i~~~il~~L~~~g~~  243 (384)
                      . ++...+...|+++|.+
T Consensus       153 ~~~~~~~~~~~L~pgG~l  170 (210)
T 3lbf_A          153 PPEIPTALMTQLDEGGIL  170 (210)
T ss_dssp             CSSCCTHHHHTEEEEEEE
T ss_pred             hhhhhHHHHHhcccCcEE
Confidence            4 5566777777777654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.55  E-value=6.7e-14  Score=127.59  Aligned_cols=141  Identities=18%  Similarity=0.212  Sum_probs=110.4

Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHhCCC---CCcc---------------cCCCcccCCHHHHHHHHHHhcCCCCCEEEE
Q 016715           86 AASACIVCARSQDDDYHATIKALNSKGR---FPRK---------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLE  147 (384)
Q Consensus        86 ~r~~mv~~~ir~~~~~~~~~~~l~~~~~---~~~~---------------~~gq~fl~~~~~~~~il~~l~~~~~~~VLE  147 (384)
                      +|+.|+..|++    ++++.+++...+.   .+..               ..|+ .+..+.+.+.+++.+...++.+|||
T Consensus         2 ar~~~~~~~~~----~~~v~~a~~~v~r~~f~~~~~~~~~Y~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vLd   76 (231)
T 1vbf_A            2 SEKEEILRKIK----TQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGI-NTTALNLGIFMLDELDLHKGQKVLE   76 (231)
T ss_dssp             CHHHHHHHHCC----CHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTE-EECCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cHHHHHHHHhC----CHHHHHHHHhCCHHHcCCcchhhhccccCCCceeeCCCC-ccCCHHHHHHHHHhcCCCCCCEEEE
Confidence            47789999998    5667777665332   1111               1244 4678999999999999889999999


Q ss_pred             EcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          148 IGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       148 IG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ||||+|.++..+++.+.+|+++|+++.+++.++++....++++++++|+.+....            .+.||+|+++.++
T Consensus        77 iG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~------------~~~fD~v~~~~~~  144 (231)
T 1vbf_A           77 IGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEE------------EKPYDRVVVWATA  144 (231)
T ss_dssp             ECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG------------GCCEEEEEESSBB
T ss_pred             EcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccccc------------CCCccEEEECCcH
Confidence            9999999999999999999999999999999999987655899999999873221            1579999988665


Q ss_pred             -cccHHHHHHhcccCCC
Q 016715          228 -NISTDVIKQLLPMGDI  243 (384)
Q Consensus       228 -~i~~~il~~L~~~g~~  243 (384)
                       ++...+...|.++|.+
T Consensus       145 ~~~~~~~~~~L~pgG~l  161 (231)
T 1vbf_A          145 PTLLCKPYEQLKEGGIM  161 (231)
T ss_dssp             SSCCHHHHHTEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEE
Confidence             5666777777776654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.52  E-value=3.5e-13  Score=120.67  Aligned_cols=102  Identities=29%  Similarity=0.405  Sum_probs=87.8

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-C
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q  188 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-~  188 (384)
                      .++..+|| |.+++.+...++..+.   ..++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ +
T Consensus        20 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~   98 (207)
T 1wy7_A           20 NPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK   98 (207)
T ss_dssp             SCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred             Ccccceee-ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            56778899 8899999998887664   45788999999999999999999865 79999999999999999986544 8


Q ss_pred             eEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccH
Q 016715          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       189 v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                      ++++++|+.+++               +.||.|++|+||+...
T Consensus        99 ~~~~~~d~~~~~---------------~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           99 FKVFIGDVSEFN---------------SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             EEEEESCGGGCC---------------CCCSEEEECCCCSSSS
T ss_pred             EEEEECchHHcC---------------CCCCEEEEcCCCcccc
Confidence            999999998863               3789999999997653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.46  E-value=1.2e-13  Score=122.31  Aligned_cols=96  Identities=21%  Similarity=0.339  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~  198 (384)
                      +...+.+.+++.+..   .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.+++++...  ++++++++|+.+
T Consensus        25 ~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  104 (189)
T 3p9n_A           25 TTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAA  104 (189)
T ss_dssp             -CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHH
T ss_pred             CcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHH
Confidence            566777777777753   5788999999999999998888865 7999999999999999987643  489999999988


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      +....          ..+.||+|++|+||+..
T Consensus       105 ~~~~~----------~~~~fD~i~~~~p~~~~  126 (189)
T 3p9n_A          105 VVAAG----------TTSPVDLVLADPPYNVD  126 (189)
T ss_dssp             HHHHC----------CSSCCSEEEECCCTTSC
T ss_pred             HHhhc----------cCCCccEEEECCCCCcc
Confidence            64311          13689999999999874

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.45  E-value=1e-12  Score=118.35  Aligned_cols=147  Identities=20%  Similarity=0.197  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHhhC-CCChHHHHHHHHhCCC---CCccc-------------CCCcccCCHHHHHHHHHHhcCCCCCEEE
Q 016715           84 KGAASACIVCARSQ-DDDYHATIKALNSKGR---FPRKS-------------LGQHYMLNSEINDQLAAAAAVQEGDIVL  146 (384)
Q Consensus        84 ~~~r~~mv~~~ir~-~~~~~~~~~~l~~~~~---~~~~~-------------~gq~fl~~~~~~~~il~~l~~~~~~~VL  146 (384)
                      +.+|..|++..+++ +..++.+.+++...+.   .+...             .|+ ++..+.+...+++.+...++.+||
T Consensus         4 ~~~~~~~~~~l~~~~~~~~~~v~~a~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vL   82 (215)
T 2yxe_A            4 EEQKKAVIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQ-TISAIHMVGMMCELLDLKPGMKVL   82 (215)
T ss_dssp             HHHHHHHHHHHHHHTSCCCHHHHHHHHHSCGGGGSCGGGGGGTTSCSCEEEETTE-EECCHHHHHHHHHHTTCCTTCEEE
T ss_pred             HHHHHHHHHHhHHhcCCCCHHHHHHHHhCCHHHcCCchhhhhcccCCCccCCCCc-EeCcHHHHHHHHHhhCCCCCCEEE
Confidence            35677788544375 7888889888877532   12111             123 456799999999999988999999


Q ss_pred             EEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          147 EIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       147 EIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      |||||+|.++..+++.+   .+|+++|+++.+++.+++++..  .++++++.+|+......            .+.||+|
T Consensus        83 diG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------------~~~fD~v  150 (215)
T 2yxe_A           83 EIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP------------LAPYDRI  150 (215)
T ss_dssp             EECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG------------GCCEEEE
T ss_pred             EECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC------------CCCeeEE
Confidence            99999999999999884   7999999999999999998753  34799999998553221            2579999


Q ss_pred             eeccCc-cccHHHHHHhcccCCC
Q 016715          222 VANIPF-NISTDVIKQLLPMGDI  243 (384)
Q Consensus       222 v~NlPy-~i~~~il~~L~~~g~~  243 (384)
                      +++.++ ++...+...|+++|.+
T Consensus       151 ~~~~~~~~~~~~~~~~L~pgG~l  173 (215)
T 2yxe_A          151 YTTAAGPKIPEPLIRQLKDGGKL  173 (215)
T ss_dssp             EESSBBSSCCHHHHHTEEEEEEE
T ss_pred             EECCchHHHHHHHHHHcCCCcEE
Confidence            998766 4556666667666644

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.42  E-value=3.5e-12  Score=115.85  Aligned_cols=149  Identities=13%  Similarity=0.215  Sum_probs=111.6

Q ss_pred             HHHHHHHHhhCC-CChHHHHHHHHhCCC---CCccc---------CCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcCc
Q 016715           87 ASACIVCARSQD-DDYHATIKALNSKGR---FPRKS---------LGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPG  151 (384)
Q Consensus        87 r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~~---------~gq~fl~~~~~~~~il~~l--~~~~~~~VLEIG~G  151 (384)
                      ++.|++...+.+ .....+.+++.....   .|...         .|+ .+..+.+...+++.+  .+.++.+|||||||
T Consensus        12 ~~~~~~~l~~~~~~~~~~v~~~~~~~~r~~f~p~~~y~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G   90 (227)
T 2pbf_A           12 HKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGV-TISAPHMHALSLKRLINVLKPGSRAIDVGSG   90 (227)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSSTTSSSCEEEETTE-EECCHHHHHHHHHHHTTTSCTTCEEEEESCT
T ss_pred             HHHHHHHHHhcCCcCCHHHHHHHHhCCHHHcCCcccCCCCccccCCCC-ccCChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            567888877765 667888888876432   23221         233 577899999999988  47788999999999


Q ss_pred             chHHHHHHHHcCC-------cEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          152 TGSLTNVLLNAGA-------TVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       152 ~G~lt~~La~~~~-------~V~avE~d~~~~~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|.++..+++...       +|+++|+++.+++.+++++..       .++++++.+|+.+......    .    ..+.
T Consensus        91 ~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~----~~~~  162 (227)
T 2pbf_A           91 SGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK----K----ELGL  162 (227)
T ss_dssp             TSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH----H----HHCC
T ss_pred             CCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC----c----cCCC
Confidence            9999999998753       999999999999999998753       3489999999988541000    0    1157


Q ss_pred             cceEeeccCc-cccHHHHHHhcccCCCe
Q 016715          218 FAKVVANIPF-NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       218 ~d~Vv~NlPy-~i~~~il~~L~~~g~~~  244 (384)
                      ||+|+++.++ ++...+...|.++|.++
T Consensus       163 fD~I~~~~~~~~~~~~~~~~LkpgG~lv  190 (227)
T 2pbf_A          163 FDAIHVGASASELPEILVDLLAENGKLI  190 (227)
T ss_dssp             EEEEEECSBBSSCCHHHHHHEEEEEEEE
T ss_pred             cCEEEECCchHHHHHHHHHhcCCCcEEE
Confidence            9999988766 55677777777777553

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.39  E-value=4.8e-13  Score=116.81  Aligned_cols=102  Identities=15%  Similarity=0.289  Sum_probs=78.0

Q ss_pred             CHHHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          126 NSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       126 ~~~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      ...+.+.+++.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++...   ++++++++|+.+..
T Consensus        15 ~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (177)
T 2esr_A           15 SDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI   94 (177)
T ss_dssp             ---CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence            3456777888776 5678899999999999999999985 59999999999999999988654   37999999998742


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCcc--ccHHHHHHhc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLL  238 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~--i~~~il~~L~  238 (384)
                      ..           ..+.||+|++|+||.  ...+.+..+.
T Consensus        95 ~~-----------~~~~fD~i~~~~~~~~~~~~~~~~~l~  123 (177)
T 2esr_A           95 DC-----------LTGRFDLVFLDPPYAKETIVATIEALA  123 (177)
T ss_dssp             HH-----------BCSCEEEEEECCSSHHHHHHHHHHHHH
T ss_pred             Hh-----------hcCCCCEEEECCCCCcchHHHHHHHHH
Confidence            11           125699999999984  2334444443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.38  E-value=8.8e-12  Score=114.19  Aligned_cols=147  Identities=16%  Similarity=0.187  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhhC-CCChHHHHHHHHhCCC---CCcc-------------cCCCcccCCHHHHHHHHHHhcCCCCCEEE
Q 016715           84 KGAASACIVCARSQ-DDDYHATIKALNSKGR---FPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVL  146 (384)
Q Consensus        84 ~~~r~~mv~~~ir~-~~~~~~~~~~l~~~~~---~~~~-------------~~gq~fl~~~~~~~~il~~l~~~~~~~VL  146 (384)
                      ..+|..|++..... +..++...+++...+.   .+..             ..|+ +...+.+...+++.+...++++||
T Consensus        18 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~vL   96 (235)
T 1jg1_A           18 YEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQ-TVSAPHMVAIMLEIANLKPGMNIL   96 (235)
T ss_dssp             HHHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTC-EECCHHHHHHHHHHHTCCTTCCEE
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHhCCHhhhCCchhhhcCccCCCcccCCCc-eeccHHHHHHHHHhcCCCCCCEEE
Confidence            45577777664424 5777778787765432   2221             1133 557899999999999988999999


Q ss_pred             EEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715          147 EIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (384)
Q Consensus       147 EIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~  223 (384)
                      |||||+|.++..+++.+ .+|+++|+++.+++.+++++...  ++++++.+|+ ..++++           ...||+|++
T Consensus        97 diG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~-----------~~~fD~Ii~  164 (235)
T 1jg1_A           97 EVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPP-----------KAPYDVIIV  164 (235)
T ss_dssp             EECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGG-----------GCCEEEEEE
T ss_pred             EEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCC-----------CCCccEEEE
Confidence            99999999999999986 89999999999999999987643  4799999998 333322           145899998


Q ss_pred             ccCc-cccHHHHHHhcccCCC
Q 016715          224 NIPF-NISTDVIKQLLPMGDI  243 (384)
Q Consensus       224 NlPy-~i~~~il~~L~~~g~~  243 (384)
                      +.+. ++...+...|.++|.+
T Consensus       165 ~~~~~~~~~~~~~~L~pgG~l  185 (235)
T 1jg1_A          165 TAGAPKIPEPLIEQLKIGGKL  185 (235)
T ss_dssp             CSBBSSCCHHHHHTEEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCCcEE
Confidence            8665 5666777777777654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.38  E-value=4.2e-12  Score=121.94  Aligned_cols=141  Identities=15%  Similarity=0.154  Sum_probs=106.4

Q ss_pred             HHHHHHhhC-CCChHHHHHHHHhCCCC---Ccc-c--------------CC---CcccCCHHHHHHHHHHhcCCCCCEEE
Q 016715           89 ACIVCARSQ-DDDYHATIKALNSKGRF---PRK-S--------------LG---QHYMLNSEINDQLAAAAAVQEGDIVL  146 (384)
Q Consensus        89 ~mv~~~ir~-~~~~~~~~~~l~~~~~~---~~~-~--------------~g---q~fl~~~~~~~~il~~l~~~~~~~VL  146 (384)
                      .|+..+++. +..+ ++.+++...+..   +.. .              .|   | ....+.+.+.+++.+.+.++++||
T Consensus         3 ~~~~~~l~~~gi~~-~v~~a~~~vpr~~fl~~~~~y~~~y~~~~~~~l~~~~f~q-~~~~~~~~~~l~~~l~~~~~~~VL   80 (317)
T 1dl5_A            3 EKLFWILKKYGVSD-HIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYS-TSSQPSLMALFMEWVGLDKGMRVL   80 (317)
T ss_dssp             HHHHHHHHHTTCCH-HHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEE-EECCHHHHHHHHHHTTCCTTCEEE
T ss_pred             HHHHHHHHHcCChH-HHHHHHHhCCHHHhCCchhccccCccCCCcccccCCCcce-eccCHHHHHHHHHhcCCCCcCEEE
Confidence            355666764 7777 888887665431   111 1              12   3 345678999999999999999999


Q ss_pred             EEcCcchHHHHHHHHcCCc---EEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          147 EIGPGTGSLTNVLLNAGAT---VLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       147 EIG~G~G~lt~~La~~~~~---V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      |||||+|.++..+++.+.+   |+++|+++.+++.+++++...  ++++++.+|+.+....+            +.||+|
T Consensus        81 DiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~------------~~fD~I  148 (317)
T 1dl5_A           81 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF------------SPYDVI  148 (317)
T ss_dssp             EECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG------------CCEEEE
T ss_pred             EecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC------------CCeEEE
Confidence            9999999999999988554   999999999999999987643  47999999998854322            579999


Q ss_pred             eeccCc-cccHHHHHHhcccCCC
Q 016715          222 VANIPF-NISTDVIKQLLPMGDI  243 (384)
Q Consensus       222 v~NlPy-~i~~~il~~L~~~g~~  243 (384)
                      +++.++ ++...+...|+++|.+
T Consensus       149 v~~~~~~~~~~~~~~~LkpgG~l  171 (317)
T 1dl5_A          149 FVTVGVDEVPETWFTQLKEGGRV  171 (317)
T ss_dssp             EECSBBSCCCHHHHHHEEEEEEE
T ss_pred             EEcCCHHHHHHHHHHhcCCCcEE
Confidence            999776 4556666777776654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.37  E-value=8.9e-12  Score=112.10  Aligned_cols=111  Identities=17%  Similarity=0.186  Sum_probs=89.0

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--C-CeEEEEccccc
Q 016715          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVK  198 (384)
Q Consensus       122 ~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~-~v~~~~gD~~~  198 (384)
                      +.++.+.+...+++.+.+.++++|||||||+|.++..+++.+.+|+|+|+++.+++.|++++...  + +++++++|+.+
T Consensus        36 ~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           36 GQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             SCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred             CCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence            35678888899999999999999999999999999999999889999999999999999987532  3 89999999988


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCcc--ccHHHHHHhcccCCCe
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDIF  244 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~--i~~~il~~L~~~g~~~  244 (384)
                      ....            .+.||.|+++....  +...+...|+++|.++
T Consensus       116 ~~~~------------~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv  151 (204)
T 3njr_A          116 ALAD------------LPLPEAVFIGGGGSQALYDRLWEWLAPGTRIV  151 (204)
T ss_dssp             GGTT------------SCCCSEEEECSCCCHHHHHHHHHHSCTTCEEE
T ss_pred             hccc------------CCCCCEEEECCcccHHHHHHHHHhcCCCcEEE
Confidence            4221            14789999885432  3344455666766554

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.35  E-value=9.8e-12  Score=113.18  Aligned_cols=144  Identities=18%  Similarity=0.273  Sum_probs=109.7

Q ss_pred             HHHHHHHHhhCC-CChHHHHHHHHhCCC---CCcc---------cCCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcCc
Q 016715           87 ASACIVCARSQD-DDYHATIKALNSKGR---FPRK---------SLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPG  151 (384)
Q Consensus        87 r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~---------~~gq~fl~~~~~~~~il~~l--~~~~~~~VLEIG~G  151 (384)
                      +..|++...+.+ ....++.+++.....   .+..         ..|+ ++..+.+...+++.+  .+.++.+|||||||
T Consensus        16 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~~y~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G   94 (227)
T 1r18_A           16 NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGV-TISAPHMHAFALEYLRDHLKPGARILDVGSG   94 (227)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCT
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHhCCHHHcCCcccccCCCcccCCCC-ccCChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            567787777665 667788888876432   2211         2344 677899999999999  47788999999999


Q ss_pred             chHHHHHHHHc-C-------CcEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          152 TGSLTNVLLNA-G-------ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       152 ~G~lt~~La~~-~-------~~V~avE~d~~~~~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +|+++..+++. +       .+|+++|+++.+++.+++++..       .++++++.+|+.+. +.+           .+
T Consensus        95 ~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~-----------~~  162 (227)
T 1r18_A           95 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-YPP-----------NA  162 (227)
T ss_dssp             TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-CGG-----------GC
T ss_pred             ccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC-CCc-----------CC
Confidence            99999999985 4       4899999999999999988653       35899999999872 221           15


Q ss_pred             CcceEeeccCc-cccHHHHHHhcccCCC
Q 016715          217 GFAKVVANIPF-NISTDVIKQLLPMGDI  243 (384)
Q Consensus       217 ~~d~Vv~NlPy-~i~~~il~~L~~~g~~  243 (384)
                      .||+|+++.+. ++...+...|+++|.+
T Consensus       163 ~fD~I~~~~~~~~~~~~~~~~LkpgG~l  190 (227)
T 1r18_A          163 PYNAIHVGAAAPDTPTELINQLASGGRL  190 (227)
T ss_dssp             SEEEEEECSCBSSCCHHHHHTEEEEEEE
T ss_pred             CccEEEECCchHHHHHHHHHHhcCCCEE
Confidence            79999988665 5667777788777754

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.35  E-value=3.6e-12  Score=114.47  Aligned_cols=88  Identities=17%  Similarity=0.063  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--------------CCCeEEEEc
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKVLQE  194 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--------------~~~v~~~~g  194 (384)
                      .+.++++.+.+.++.+|||+|||+|..+..|+++|.+|+|||+++.|++.|+++...              .++++++++
T Consensus        10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            344556667777889999999999999999999999999999999999999988642              358999999


Q ss_pred             cccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      |+.++++.+           .+.||.|+++..+
T Consensus        90 d~~~l~~~~-----------~~~fD~v~~~~~l  111 (203)
T 1pjz_A           90 DFFALTARD-----------IGHCAAFYDRAAM  111 (203)
T ss_dssp             CCSSSTHHH-----------HHSEEEEEEESCG
T ss_pred             ccccCCccc-----------CCCEEEEEECcch
Confidence            999987642           1479999986555

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.34  E-value=2.1e-12  Score=112.75  Aligned_cols=84  Identities=24%  Similarity=0.251  Sum_probs=68.6

Q ss_pred             CCHHHHHHHHHHhcC--CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchh
Q 016715          125 LNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       125 ~~~~~~~~il~~l~~--~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (384)
                      .+....+.+++.+..  .++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++.       .++++++++|+.+ ++.
T Consensus         5 ~P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-------~~~~~~~~~d~~~-~~~   75 (170)
T 3q87_B            5 EPGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-------HRGGNLVRADLLC-SIN   75 (170)
T ss_dssp             CCCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-------CSSSCEEECSTTT-TBC
T ss_pred             CcCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-------ccCCeEEECChhh-hcc
Confidence            334445566666654  567899999999999999999999 99999999999988       3589999999987 332


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCccc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      +            +.||.|++|+||..
T Consensus        76 ~------------~~fD~i~~n~~~~~   90 (170)
T 3q87_B           76 Q------------ESVDVVVFNPPYVP   90 (170)
T ss_dssp             G------------GGCSEEEECCCCBT
T ss_pred             c------------CCCCEEEECCCCcc
Confidence            2            57999999999974

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.34  E-value=4.7e-12  Score=112.85  Aligned_cols=98  Identities=18%  Similarity=0.253  Sum_probs=76.1

Q ss_pred             CcccCCCcccCCHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeE
Q 016715          115 PRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLK  190 (384)
Q Consensus       115 ~~~~~gq~fl~~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~  190 (384)
                      ++..++| |.++..+...++..+.   ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++..   +++
T Consensus        23 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~   98 (200)
T 1ne2_A           23 FKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GVN   98 (200)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TSE
T ss_pred             cccceee-cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---CCE
Confidence            4445566 7788888888877663   45778999999999999999999866 69999999999999999875   799


Q ss_pred             EEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccH
Q 016715          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       191 ~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                      ++++|+.+++               +.||+|++|+||+...
T Consensus        99 ~~~~d~~~~~---------------~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A           99 FMVADVSEIS---------------GKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             EEECCGGGCC---------------CCEEEEEECCCC----
T ss_pred             EEECcHHHCC---------------CCeeEEEECCCchhcc
Confidence            9999998863               4799999999997654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.33  E-value=3.9e-12  Score=111.75  Aligned_cols=79  Identities=15%  Similarity=0.297  Sum_probs=65.5

Q ss_pred             cCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          138 AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..  .++++++++|+..++..           ..
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~-----------~~   87 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY-----------VR   87 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT-----------CC
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh-----------cc
Confidence            345789999999999999999999988999999999999999998763  25899999888765321           12


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      +.||.|++|++|
T Consensus        88 ~~fD~v~~~~~~   99 (185)
T 3mti_A           88 EPIRAAIFNLGY   99 (185)
T ss_dssp             SCEEEEEEEEC-
T ss_pred             CCcCEEEEeCCC
Confidence            579999999876

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.32  E-value=1.2e-11  Score=110.52  Aligned_cols=109  Identities=14%  Similarity=0.216  Sum_probs=88.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKC  199 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~  199 (384)
                      ++.+.+...+++.+.+.++++|||||||+|.++..+++.+  .+|+++|+++.+++.++++...  .++++++++|+.+.
T Consensus        23 ~~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  102 (204)
T 3e05_A           23 ITKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG  102 (204)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT
T ss_pred             CChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh
Confidence            4788888999999999999999999999999999999986  7999999999999999998753  25899999999765


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCccccHHH----HHHhcccCCCe
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV----IKQLLPMGDIF  244 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~i----l~~L~~~g~~~  244 (384)
                      ...            .+.+|.|+++.++.....+    ...|.++|.++
T Consensus       103 ~~~------------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~  139 (204)
T 3e05_A          103 LDD------------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIV  139 (204)
T ss_dssp             CTT------------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEE
T ss_pred             hhc------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEE
Confidence            322            1569999999876544433    44566666554

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.32  E-value=2.2e-11  Score=107.98  Aligned_cols=85  Identities=16%  Similarity=0.298  Sum_probs=69.7

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhh
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (384)
                      ..+....+.++++|||+|||+|.++..+++. +  .+|+|+|+++.+++.+++++...   ++++++++|+.+++..   
T Consensus        13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---   89 (197)
T 3eey_A           13 HDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY---   89 (197)
T ss_dssp             HHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT---
T ss_pred             HHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh---
Confidence            3344445678899999999999999999987 2  59999999999999999987653   4899999999877521   


Q ss_pred             hhHHhhhccCCCcceEeeccCc
Q 016715          206 LSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                              ..+.||.|++|+||
T Consensus        90 --------~~~~fD~v~~~~~~  103 (197)
T 3eey_A           90 --------IDCPVKAVMFNLGY  103 (197)
T ss_dssp             --------CCSCEEEEEEEESB
T ss_pred             --------ccCCceEEEEcCCc
Confidence                    12679999999988

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.30  E-value=9.3e-12  Score=111.68  Aligned_cols=94  Identities=17%  Similarity=0.183  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715          125 LNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~  200 (384)
                      +...+.+.+++.+... ++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++...  ++++++++|+.+..
T Consensus        37 ~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~  116 (202)
T 2fpo_A           37 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL  116 (202)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             CHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence            3456677777776543 678999999999999999888865 8999999999999999988644  48999999988742


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ..           ..+.||+|++|+||+.
T Consensus       117 ~~-----------~~~~fD~V~~~~p~~~  134 (202)
T 2fpo_A          117 AQ-----------KGTPHNIVFVDPPFRR  134 (202)
T ss_dssp             SS-----------CCCCEEEEEECCSSST
T ss_pred             hh-----------cCCCCCEEEECCCCCC
Confidence            11           1257999999999863

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.29  E-value=1.2e-11  Score=115.63  Aligned_cols=76  Identities=22%  Similarity=0.355  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhh
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ++++.+|||||||+|.++..|++.    +++|+|||+++.|++.|++++...   .+++++++|+.++++          
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----------  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------  137 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence            568899999999999999999986    568999999999999999987643   389999999998865          


Q ss_pred             hccCCCcceEeeccCcc
Q 016715          212 RKSSSGFAKVVANIPFN  228 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~  228 (384)
                          +.+|+|++|...+
T Consensus       138 ----~~~d~v~~~~~l~  150 (261)
T 4gek_A          138 ----ENASMVVLNFTLQ  150 (261)
T ss_dssp             ----CSEEEEEEESCGG
T ss_pred             ----cccccceeeeeee
Confidence                3589999886553

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.29  E-value=1e-11  Score=107.12  Aligned_cols=108  Identities=15%  Similarity=0.143  Sum_probs=82.4

Q ss_pred             ccCCHHHHHHHHHHhcCC--CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcccccc
Q 016715          123 YMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~--~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~  199 (384)
                      ..+...+.+.+++.+...  ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++...+ +++++++|+.+.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  100 (171)
T 1ws6_A           21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVF  100 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHH
Confidence            345677888888887642  67899999999999999999998889999999999999999876433 899999999874


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCcc-ccHHHHHHhc
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLL  238 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~-i~~~il~~L~  238 (384)
                      ....     .   .....||+|++|+||+ ...+.+..+.
T Consensus       101 ~~~~-----~---~~~~~~D~i~~~~~~~~~~~~~~~~~~  132 (171)
T 1ws6_A          101 LPEA-----K---AQGERFTVAFMAPPYAMDLAALFGELL  132 (171)
T ss_dssp             HHHH-----H---HTTCCEEEEEECCCTTSCTTHHHHHHH
T ss_pred             HHhh-----h---ccCCceEEEEECCCCchhHHHHHHHHH
Confidence            2110     0   0123799999999984 3344444443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.29  E-value=5.7e-12  Score=117.33  Aligned_cols=88  Identities=16%  Similarity=0.270  Sum_probs=70.7

Q ss_pred             HHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhh
Q 016715          133 LAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       133 il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      +..++... ++++|||+|||+|.++..+++++. +|+|+|+++.+++.|++++..+   ++++++++|+.++....    
T Consensus        40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~----  115 (259)
T 3lpm_A           40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI----  115 (259)
T ss_dssp             HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS----
T ss_pred             HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh----
Confidence            44455666 789999999999999999999865 9999999999999999988643   36999999999875310    


Q ss_pred             HHhhhccCCCcceEeeccCcccc
Q 016715          208 LFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                            ..+.||+|++|+||...
T Consensus       116 ------~~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A          116 ------PKERADIVTCNPPYFAT  132 (259)
T ss_dssp             ------CTTCEEEEEECCCC---
T ss_pred             ------ccCCccEEEECCCCCCC
Confidence                  12689999999999544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.29  E-value=3.8e-11  Score=104.33  Aligned_cols=102  Identities=16%  Similarity=0.230  Sum_probs=85.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~  200 (384)
                      ....+.+.+.+++.+...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...  ++++++++|+.+ +
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~   95 (183)
T 2yxd_A           17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V   95 (183)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H
T ss_pred             CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c
Confidence            4567889999999998888999999999999999999997779999999999999999987643  489999999987 4


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL  238 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~  238 (384)
                      +++            +.+|+|+++.+ .....++..+.
T Consensus        96 ~~~------------~~~D~i~~~~~-~~~~~~l~~~~  120 (183)
T 2yxd_A           96 LDK------------LEFNKAFIGGT-KNIEKIIEILD  120 (183)
T ss_dssp             GGG------------CCCSEEEECSC-SCHHHHHHHHH
T ss_pred             ccC------------CCCcEEEECCc-ccHHHHHHHHh
Confidence            332            57999999988 55555655444

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.29  E-value=8.3e-12  Score=115.45  Aligned_cols=92  Identities=17%  Similarity=0.258  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (384)
                      ....+.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....++++++++|+.+.++++  
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~--  118 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPE--  118 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCT--
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCC--
Confidence            567788888888888999999999999999999997 88999999999999999998865578999999999987643  


Q ss_pred             hhHHhhhccCCCcceEeeccCcccc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                                +.||+|+++..++..
T Consensus       119 ----------~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A          119 ----------NNFDLIYSRDAILAL  133 (266)
T ss_dssp             ----------TCEEEEEEESCGGGS
T ss_pred             ----------CcEEEEeHHHHHHhc
Confidence                      689999998665443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.29  E-value=8.3e-12  Score=122.97  Aligned_cols=95  Identities=13%  Similarity=0.164  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhc---------C--CCCeEE
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA---------S--IDQLKV  191 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~---------~--~~~v~~  191 (384)
                      +.+..+..+++.+.+.++++|||||||+|.++..++.. ++ +|+|||+++.+++.|+++..         .  .+++++
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            66888999999999999999999999999999999865 66 59999999999999887531         1  258999


Q ss_pred             EEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       192 ~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ++||+.+.++.+.+          +.+|+|++|.+|..
T Consensus       237 i~GD~~~lp~~d~~----------~~aDVVf~Nn~~F~  264 (438)
T 3uwp_A          237 ERGDFLSEEWRERI----------ANTSVIFVNNFAFG  264 (438)
T ss_dssp             EECCTTSHHHHHHH----------HTCSEEEECCTTCC
T ss_pred             EECcccCCcccccc----------CCccEEEEcccccC
Confidence            99999998765421          36899999987754

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.28  E-value=1.6e-11  Score=120.67  Aligned_cols=93  Identities=19%  Similarity=0.253  Sum_probs=81.5

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      ...+.+.+.|+... ..++.+|||+|||+|.++..++..+.  +|+|+|+|+.+++.|++++...   ++++++++|+.+
T Consensus       201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~  279 (373)
T 3tm4_A          201 HLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ  279 (373)
T ss_dssp             CCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred             CccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence            45788999999988 88889999999999999999999876  9999999999999999998643   379999999999


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ++..+            +.||+|++|+||..
T Consensus       280 ~~~~~------------~~fD~Ii~npPyg~  298 (373)
T 3tm4_A          280 LSQYV------------DSVDFAISNLPYGL  298 (373)
T ss_dssp             GGGTC------------SCEEEEEEECCCC-
T ss_pred             CCccc------------CCcCEEEECCCCCc
Confidence            87543            57999999999964

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.27  E-value=1.5e-11  Score=123.20  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~  204 (384)
                      +.+++.+++.+...++++|||+|||+|.++..|++.+.+|+|+|+++.+++.|++++..+  ++++++++|+.+......
T Consensus       272 e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~  351 (433)
T 1uwv_A          272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP  351 (433)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred             HHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh
Confidence            345666777777778889999999999999999999889999999999999999988643  489999999988321100


Q ss_pred             hhhHHhhhccCCCcceEeeccCccccHHHHHHhcc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~  239 (384)
                              ...+.||+|++|+||....+++..+..
T Consensus       352 --------~~~~~fD~Vv~dPPr~g~~~~~~~l~~  378 (433)
T 1uwv_A          352 --------WAKNGFDKVLLDPARAGAAGVMQQIIK  378 (433)
T ss_dssp             --------GGTTCCSEEEECCCTTCCHHHHHHHHH
T ss_pred             --------hhcCCCCEEEECCCCccHHHHHHHHHh
Confidence                    012579999999999877788887765

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.26  E-value=2e-11  Score=118.96  Aligned_cols=95  Identities=21%  Similarity=0.220  Sum_probs=83.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~  197 (384)
                      ....+.+++.++..+...++..|||+|||+|.++..++..+   .+|+|+|+|+.+++.|++++...+  +++++++|+.
T Consensus       185 a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~  264 (354)
T 3tma_A          185 GSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR  264 (354)
T ss_dssp             CSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG
T ss_pred             CCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh
Confidence            45678899999999999899999999999999999999975   799999999999999999987544  8999999999


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      +++...            +.+|+|++|+||..
T Consensus       265 ~~~~~~------------~~~D~Ii~npPyg~  284 (354)
T 3tma_A          265 HLPRFF------------PEVDRILANPPHGL  284 (354)
T ss_dssp             GGGGTC------------CCCSEEEECCCSCC
T ss_pred             hCcccc------------CCCCEEEECCCCcC
Confidence            986543            45899999999954

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.26  E-value=3.2e-11  Score=105.57  Aligned_cols=106  Identities=15%  Similarity=0.311  Sum_probs=81.3

Q ss_pred             cCCHHHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          124 MLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       124 l~~~~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      .+.+.+.+.+++.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++...   ++++++++|+.+
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  105 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR  105 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence            356778888888885 3578899999999999999998886 58999999999999999987532   379999999987


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccc--cHHHHHHh
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQL  237 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L  237 (384)
                      .....     .   ...+.||+|++|+||..  ..+.+..+
T Consensus       106 ~~~~~-----~---~~~~~fD~i~~~~~~~~~~~~~~~~~l  138 (187)
T 2fhp_A          106 ALEQF-----Y---EEKLQFDLVLLDPPYAKQEIVSQLEKM  138 (187)
T ss_dssp             HHHHH-----H---HTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred             HHHHH-----H---hcCCCCCEEEECCCCCchhHHHHHHHH
Confidence            43210     0   01267999999999853  34444444

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.26  E-value=1.1e-11  Score=113.59  Aligned_cols=95  Identities=20%  Similarity=0.226  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       125 ~~~~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      ....+.+.++..+. ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...   ++++++++|+.+++
T Consensus        61 ~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  140 (241)
T 3gdh_A           61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA  140 (241)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG
T ss_pred             CHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc
Confidence            44556666666653 236889999999999999999999999999999999999999987643   38999999998875


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccccHH
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTD  232 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~  232 (384)
                      ..             ..||+|++|+||+....
T Consensus       141 ~~-------------~~~D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          141 SF-------------LKADVVFLSPPWGGPDY  159 (241)
T ss_dssp             GG-------------CCCSEEEECCCCSSGGG
T ss_pred             cc-------------CCCCEEEECCCcCCcch
Confidence            21             58999999999976543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.26  E-value=3.2e-11  Score=109.60  Aligned_cols=95  Identities=16%  Similarity=0.245  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCc-chHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccch
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI  201 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~  201 (384)
                      .+....+.++-.....++.+|||+||| +|.++..+++. +.+|+|+|+|+.+++.+++++...+ +++++++|+..+..
T Consensus        39 ~p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  118 (230)
T 3evz_A           39 VTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKG  118 (230)
T ss_dssp             CCCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTT
T ss_pred             eCCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhh
Confidence            334444555344445678999999999 99999999998 8899999999999999999886544 79999999754321


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      .           ..+.||+|++|+||...
T Consensus       119 ~-----------~~~~fD~I~~npp~~~~  136 (230)
T 3evz_A          119 V-----------VEGTFDVIFSAPPYYDK  136 (230)
T ss_dssp             T-----------CCSCEEEEEECCCCC--
T ss_pred             c-----------ccCceeEEEECCCCcCC
Confidence            1           12679999999999653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.26  E-value=2.9e-11  Score=109.69  Aligned_cols=109  Identities=17%  Similarity=0.259  Sum_probs=89.5

Q ss_pred             ccCCHHHHHHHHHHhc--CCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcC-------CCCeE
Q 016715          123 YMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-------IDQLK  190 (384)
Q Consensus       123 fl~~~~~~~~il~~l~--~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~-------~~~v~  190 (384)
                      ++.++.+...+++.+.  +.++.+|||||||+|..+..+++. +  .+|+++|+++.+++.+++++..       .++++
T Consensus        57 ~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~  136 (226)
T 1i1n_A           57 TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ  136 (226)
T ss_dssp             EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEE
T ss_pred             eecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEE
Confidence            5678899999999886  778899999999999999999987 4  5899999999999999988753       35899


Q ss_pred             EEEccccccchhhhhhhHHhhhccCCCcceEeeccCc-cccHHHHHHhcccCCC
Q 016715          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGDI  243 (384)
Q Consensus       191 ~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy-~i~~~il~~L~~~g~~  243 (384)
                      ++++|+......+            +.||+|+++.++ ++...+...|+++|.+
T Consensus       137 ~~~~d~~~~~~~~------------~~fD~i~~~~~~~~~~~~~~~~LkpgG~l  178 (226)
T 1i1n_A          137 LVVGDGRMGYAEE------------APYDAIHVGAAAPVVPQALIDQLKPGGRL  178 (226)
T ss_dssp             EEESCGGGCCGGG------------CCEEEEEECSBBSSCCHHHHHTEEEEEEE
T ss_pred             EEECCcccCcccC------------CCcCEEEECCchHHHHHHHHHhcCCCcEE
Confidence            9999998654322            579999998776 5667777777777654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.25  E-value=2.7e-11  Score=105.19  Aligned_cols=109  Identities=13%  Similarity=0.168  Sum_probs=85.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--C-CeEEEEccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVK  198 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~-~v~~~~gD~~~  198 (384)
                      ++.+.+...+++.+.+.++++|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++...  + ++ ++++|+.+
T Consensus         8 ~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~   86 (178)
T 3hm2_A            8 LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR   86 (178)
T ss_dssp             SHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred             ccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence            456778889999999889999999999999999999988  679999999999999999987643  3 78 88899865


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccc---cHHHHHHhcccCCCe
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI---STDVIKQLLPMGDIF  244 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i---~~~il~~L~~~g~~~  244 (384)
                       .+++          ..+.||.|+++.+++.   ...+...|.++|.++
T Consensus        87 -~~~~----------~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~  124 (178)
T 3hm2_A           87 -AFDD----------VPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLV  124 (178)
T ss_dssp             -GGGG----------CCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEE
T ss_pred             -hhhc----------cCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEE
Confidence             2221          1257999999887754   445555666666553

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.25  E-value=1.1e-10  Score=117.45  Aligned_cols=101  Identities=18%  Similarity=0.250  Sum_probs=84.5

Q ss_pred             CcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---------------CCcEEEEeCCHHHHHHH
Q 016715          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGLV  179 (384)
Q Consensus       115 ~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---------------~~~V~avE~d~~~~~~a  179 (384)
                      .++..|+ |.+++.+++.|++.+.+.++.+|||+|||+|.+...+++.               +.+++|+|+++.+++.|
T Consensus       146 ~~~~~G~-fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA  224 (445)
T 2okc_A          146 KKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA  224 (445)
T ss_dssp             TTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             ccccCCc-ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence            4456788 6799999999999999888899999999999999888864               36899999999999999


Q ss_pred             HHHhcC--CC--CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          180 RERFAS--ID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       180 ~~~~~~--~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      +.++..  .+  ++.+.++|++..+..             ..||+|++|+||..
T Consensus       225 ~~nl~l~g~~~~~~~i~~gD~l~~~~~-------------~~fD~Iv~NPPf~~  265 (445)
T 2okc_A          225 SMNLYLHGIGTDRSPIVCEDSLEKEPS-------------TLVDVILANPPFGT  265 (445)
T ss_dssp             HHHHHHTTCCSSCCSEEECCTTTSCCS-------------SCEEEEEECCCSSC
T ss_pred             HHHHHHhCCCcCCCCEeeCCCCCCccc-------------CCcCEEEECCCCCC
Confidence            987642  22  678999999886532             47999999999964

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.25  E-value=1.8e-11  Score=114.03  Aligned_cols=92  Identities=12%  Similarity=0.021  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc-------------------C
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA-------------------S  185 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~-------------------~  185 (384)
                      .++.+.+.+...+...++.+|||+|||+|..+..|++.|.+|+|||+++.|++.|+++..                   .
T Consensus        52 ~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~  131 (252)
T 2gb4_A           52 GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS  131 (252)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence            455555555544444577899999999999999999999999999999999999987653                   1


Q ss_pred             CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          186 IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       186 ~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ..+++++++|+.++++.+           .+.||.|+++..+
T Consensus       132 ~~~i~~~~~D~~~l~~~~-----------~~~FD~V~~~~~l  162 (252)
T 2gb4_A          132 SGSISLYCCSIFDLPRAN-----------IGKFDRIWDRGAL  162 (252)
T ss_dssp             TSSEEEEESCTTTGGGGC-----------CCCEEEEEESSST
T ss_pred             CCceEEEECccccCCccc-----------CCCEEEEEEhhhh
Confidence            258999999999987542           2579999976544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.25  E-value=4.1e-11  Score=110.44  Aligned_cols=90  Identities=13%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      ..+..++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....   ++++++++|+.+++
T Consensus        20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~   99 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   99 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC
Confidence            45688899999999889999999999999999999987 779999999999999999987532   47999999999876


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      + +            +.||+|+++...
T Consensus       100 ~-~------------~~fD~V~~~~~~  113 (256)
T 1nkv_A          100 A-N------------EKCDVAACVGAT  113 (256)
T ss_dssp             C-S------------SCEEEEEEESCG
T ss_pred             c-C------------CCCCEEEECCCh
Confidence            5 2            579999986444

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.24  E-value=4.7e-11  Score=104.59  Aligned_cols=90  Identities=18%  Similarity=0.321  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CC--eEEEEccccccchhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQ--LKVLQEDFVKCHIRS  203 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~--v~~~~gD~~~~~~~~  203 (384)
                      ...+.+++.+...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...  ++  ++++++|+.+...  
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--  116 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--  116 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--
Confidence            67888999998888899999999999999999998889999999999999999987632  34  9999999987432  


Q ss_pred             hhhhHHhhhccCCCcceEeeccCcccc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                                 .+.+|+|++|.||+..
T Consensus       117 -----------~~~~D~v~~~~~~~~~  132 (194)
T 1dus_A          117 -----------DRKYNKIITNPPIRAG  132 (194)
T ss_dssp             -----------TSCEEEEEECCCSTTC
T ss_pred             -----------cCCceEEEECCCcccc
Confidence                       2579999999998763

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.24  E-value=6.5e-12  Score=117.33  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=79.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (384)
                      ++.+.+.|.+...  .+.+|||||||+|.++..|++.+.+|+|+|+++.|++.|++    .++++++++|+.++++++  
T Consensus        26 p~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~----~~~v~~~~~~~e~~~~~~--   97 (257)
T 4hg2_A           26 PRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR----HPRVTYAVAPAEDTGLPP--   97 (257)
T ss_dssp             CHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC----CTTEEEEECCTTCCCCCS--
T ss_pred             HHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh----cCCceeehhhhhhhcccC--
Confidence            3567777766654  35699999999999999999999999999999999987753    368999999999998765  


Q ss_pred             hhHHhhhccCCCcceEeeccCccccH------HHHHHhcccCCC
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDI  243 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i~~------~il~~L~~~g~~  243 (384)
                                +.||+|+++..+++..      ++.+.|+++|.+
T Consensus        98 ----------~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l  131 (257)
T 4hg2_A           98 ----------ASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVF  131 (257)
T ss_dssp             ----------SCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEE
T ss_pred             ----------CcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEE
Confidence                      6899999987665542      344556666654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.24  E-value=9.2e-12  Score=111.61  Aligned_cols=93  Identities=18%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccccc
Q 016715          127 SEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCH  200 (384)
Q Consensus       127 ~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~~~  200 (384)
                      ..+.+.+++.+... ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...    ++++++++|+.+..
T Consensus        38 ~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~  117 (201)
T 2ift_A           38 DRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL  117 (201)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH
Confidence            35566666666543 678999999999999999888765 8999999999999999987632    48999999998753


Q ss_pred             hhhhhhhHHhhhccCCC-cceEeeccCccc
Q 016715          201 IRSHMLSLFERRKSSSG-FAKVVANIPFNI  229 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~-~d~Vv~NlPy~i  229 (384)
                      ...          ..+. ||+|++|+||..
T Consensus       118 ~~~----------~~~~~fD~I~~~~~~~~  137 (201)
T 2ift_A          118 KQP----------QNQPHFDVVFLDPPFHF  137 (201)
T ss_dssp             TSC----------CSSCCEEEEEECCCSSS
T ss_pred             Hhh----------ccCCCCCEEEECCCCCC
Confidence            210          1257 999999999864

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.23  E-value=1e-11  Score=111.64  Aligned_cols=87  Identities=16%  Similarity=0.152  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .....+...+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++....++++++++|+.+++. +    
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-~----  112 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFST-A----  112 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCC-S----
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCC-C----
Confidence            34444554566667889999999999999999999889999999999999999998776799999999998862 2    


Q ss_pred             HHhhhccCCCcceEeeccCc
Q 016715          208 LFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy  227 (384)
                              +.||+|+++..+
T Consensus       113 --------~~fD~v~~~~~l  124 (216)
T 3ofk_A          113 --------ELFDLIVVAEVL  124 (216)
T ss_dssp             --------CCEEEEEEESCG
T ss_pred             --------CCccEEEEccHH
Confidence                    679999998655

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.22  E-value=2.6e-11  Score=112.38  Aligned_cols=104  Identities=18%  Similarity=0.252  Sum_probs=82.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~  206 (384)
                      -.+.+++.+...++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++....  +++.++.+|+.++++++   
T Consensus        25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~---  101 (260)
T 1vl5_A           25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD---  101 (260)
T ss_dssp             CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT---
T ss_pred             HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC---
Confidence            3567788888888899999999999999999999889999999999999999887532  47999999999987653   


Q ss_pred             hHHhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCCe
Q 016715          207 SLFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDIF  244 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~~  244 (384)
                               +.||+|+++..++..       ..+.+.|+++|.++
T Consensus       102 ---------~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  137 (260)
T 1vl5_A          102 ---------ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL  137 (260)
T ss_dssp             ---------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEE
Confidence                     689999998655332       23445566666543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.22  E-value=2.7e-11  Score=119.47  Aligned_cols=89  Identities=26%  Similarity=0.395  Sum_probs=73.8

Q ss_pred             HHHHHHHHhc--CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhh
Q 016715          129 INDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       129 ~~~~il~~l~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~  205 (384)
                      +++.+.+.+.  ..++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++..++ +++++++|+.+....+  
T Consensus       219 ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~--  296 (381)
T 3dmg_A          219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEE--  296 (381)
T ss_dssp             HHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTT--
T ss_pred             HHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccC--
Confidence            4444444442  3467899999999999999999999999999999999999999987544 6899999999876432  


Q ss_pred             hhHHhhhccCCCcceEeeccCccc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                                +.||.|++|+||+.
T Consensus       297 ----------~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          297 ----------ARFDIIVTNPPFHV  310 (381)
T ss_dssp             ----------CCEEEEEECCCCCT
T ss_pred             ----------CCeEEEEECCchhh
Confidence                      58999999999986

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.22  E-value=2e-11  Score=120.15  Aligned_cols=88  Identities=16%  Similarity=0.221  Sum_probs=72.7

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC-----CeEEEEccccccch
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHI  201 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~-----~v~~~~gD~~~~~~  201 (384)
                      ..+.+++.+...++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.+++++..++     +++++.+|+.+. +
T Consensus       210 ~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-~  288 (375)
T 4dcm_A          210 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V  288 (375)
T ss_dssp             HHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-C
T ss_pred             HHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-C
Confidence            3456788888777789999999999999999998  5799999999999999999876432     588899999873 2


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      .            .+.||.|++|+||+.
T Consensus       289 ~------------~~~fD~Ii~nppfh~  304 (375)
T 4dcm_A          289 E------------PFRFNAVLCNPPFHQ  304 (375)
T ss_dssp             C------------TTCEEEEEECCCC--
T ss_pred             C------------CCCeeEEEECCCccc
Confidence            2            257999999999974

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=2.4e-11  Score=112.99  Aligned_cols=93  Identities=18%  Similarity=0.235  Sum_probs=79.0

Q ss_pred             CCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc
Q 016715          119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (384)
Q Consensus       119 ~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~  198 (384)
                      |.+.....+.+.+.+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.    +++++++|+.+
T Consensus        12 y~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~   87 (261)
T 3ege_A           12 YSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP----QVEWFTGYAEN   87 (261)
T ss_dssp             -CCSBCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT----TEEEECCCTTS
T ss_pred             HhhcccccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc----CCEEEECchhh
Confidence            33334466789999999998888999999999999999999998899999999999998876553    89999999998


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +++++            +.||.|+++..+
T Consensus        88 ~~~~~------------~~fD~v~~~~~l  104 (261)
T 3ege_A           88 LALPD------------KSVDGVISILAI  104 (261)
T ss_dssp             CCSCT------------TCBSEEEEESCG
T ss_pred             CCCCC------------CCEeEEEEcchH
Confidence            87643            689999988655

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.21  E-value=7.6e-11  Score=111.92  Aligned_cols=87  Identities=14%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (384)
                      ..++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....   ++++++++|+.++   +
T Consensus        59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~  135 (302)
T 3hem_A           59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D  135 (302)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred             HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C
Confidence            35567888888889999999999999999999998 899999999999999999987643   2799999999876   2


Q ss_pred             hhhhHHhhhccCCCcceEeeccCccc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                                  +.||+|+++..++.
T Consensus       136 ------------~~fD~v~~~~~~~~  149 (302)
T 3hem_A          136 ------------EPVDRIVSLGAFEH  149 (302)
T ss_dssp             ------------CCCSEEEEESCGGG
T ss_pred             ------------CCccEEEEcchHHh
Confidence                        58999999866533

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.21  E-value=5e-11  Score=107.36  Aligned_cols=100  Identities=27%  Similarity=0.421  Sum_probs=78.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      ...+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++..  ++++++.+|+.++++.       
T Consensus        34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~~~~~-------  104 (220)
T 3hnr_A           34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFEVP-------  104 (220)
T ss_dssp             HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC--TTCCEESCCSSSCCCC-------
T ss_pred             HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC--CceEEEeCChhhcCCC-------
Confidence            3456666666678899999999999999999999999999999999999999875  5899999999987642       


Q ss_pred             hhhccCCCcceEeeccCccc-c--------HHHHHHhcccCCCe
Q 016715          210 ERRKSSSGFAKVVANIPFNI-S--------TDVIKQLLPMGDIF  244 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~NlPy~i-~--------~~il~~L~~~g~~~  244 (384)
                            +.||+|+++..++. .        ..+...|+++|.++
T Consensus       105 ------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  142 (220)
T 3hnr_A          105 ------TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIV  142 (220)
T ss_dssp             ------SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ------CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEE
Confidence                  57999999865532 2        23334555666544

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.21  E-value=5.3e-11  Score=111.31  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch--hhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI--RSH  204 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~--~~~  204 (384)
                      +..++.+++.+.+.++.+|||||||+|.++..|++++++|+|+|+|+.|++.|+++....    ++.+|+.+++.  .. 
T Consensus        31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~-  105 (261)
T 3iv6_A           31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPK-  105 (261)
T ss_dssp             CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCG-
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----cceeeeeeccccccc-
Confidence            456788899998889999999999999999999999999999999999999999997643    34455555443  10 


Q ss_pred             hhhHHhhhccCCCcceEeeccCcc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                              ...+.||.|++|..++
T Consensus       106 --------~~~~~fD~Vv~~~~l~  121 (261)
T 3iv6_A          106 --------ELAGHFDFVLNDRLIN  121 (261)
T ss_dssp             --------GGTTCCSEEEEESCGG
T ss_pred             --------ccCCCccEEEEhhhhH
Confidence                    0125799999987654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.20  E-value=3.9e-11  Score=111.61  Aligned_cols=131  Identities=18%  Similarity=0.244  Sum_probs=86.0

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEE
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVL  192 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~  192 (384)
                      .|...||.+...........+... ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++...++ .++++
T Consensus        94 ~p~~~fgtg~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~  172 (254)
T 2nxc_A           94 EPGMAFGTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFL  172 (254)
T ss_dssp             CCC-----CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred             CCCccccCCCCHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence            455556654443333333444433 4578899999999999999999998899999999999999999876433 38999


Q ss_pred             EccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHH----HHHhcccCCCeeEEEEEeeHHHHHH
Q 016715          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV----IKQLLPMGDIFSEVVLLLQEETALR  258 (384)
Q Consensus       193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~i----l~~L~~~g~~~~~~~~~~qke~a~r  258 (384)
                      ++|+.+. ++            .+.||+|++|++.+....+    ...|+++|.++......-+.+....
T Consensus       173 ~~d~~~~-~~------------~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~  229 (254)
T 2nxc_A          173 EGSLEAA-LP------------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVRE  229 (254)
T ss_dssp             ESCHHHH-GG------------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHH
T ss_pred             ECChhhc-Cc------------CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHH
Confidence            9998763 21            1579999999877554433    3455566655443333333333333

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.19  E-value=7.3e-11  Score=106.39  Aligned_cols=90  Identities=17%  Similarity=0.275  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC-------CeEEEEccc
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDF  196 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~-------~v~~~~gD~  196 (384)
                      ++...+.+++.+...++.+|||||||+|.++..+++.+  .+|+|+|+++.+++.+++++...+       +++++++|+
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (219)
T 3jwg_A           14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL   93 (219)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred             hHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence            44566777777766678899999999999999999985  599999999999999999875322       899999999


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ...+..+            +.||+|+++-.+
T Consensus        94 ~~~~~~~------------~~fD~V~~~~~l  112 (219)
T 3jwg_A           94 VYRDKRF------------SGYDAATVIEVI  112 (219)
T ss_dssp             SSCCGGG------------TTCSEEEEESCG
T ss_pred             ccccccc------------CCCCEEEEHHHH
Confidence            7766533            679999987554

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.19  E-value=7.2e-11  Score=107.43  Aligned_cols=88  Identities=22%  Similarity=0.396  Sum_probs=73.5

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       129 ~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (384)
                      ..+.+++.+. ..++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.+++++...++++++++|+.++++.   
T Consensus        31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---  107 (234)
T 3dtn_A           31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE---  107 (234)
T ss_dssp             HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC---
T ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC---
Confidence            3455555554 456789999999999999999998  7799999999999999999987666999999999988653   


Q ss_pred             hhHHhhhccCCCcceEeeccCccc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                                +.||+|+++..++.
T Consensus       108 ----------~~fD~v~~~~~l~~  121 (234)
T 3dtn_A          108 ----------EKYDMVVSALSIHH  121 (234)
T ss_dssp             ----------SCEEEEEEESCGGG
T ss_pred             ----------CCceEEEEeCcccc
Confidence                      57999999876643

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.19  E-value=3.2e-11  Score=110.37  Aligned_cols=84  Identities=20%  Similarity=0.220  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcccccc--chh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKC--HIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~--~~~  202 (384)
                      ..+...+...+ ..++.+|||||||+|.++..+++.+. +|+|+|+++.|++.|+++.... .+++++++|+.++  ++.
T Consensus        47 ~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  125 (236)
T 1zx0_A           47 TPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP  125 (236)
T ss_dssp             HHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccC
Confidence            44555555544 45678999999999999999988655 8999999999999999987643 4799999999887  443


Q ss_pred             hhhhhHHhhhccCCCcceEee
Q 016715          203 SHMLSLFERRKSSSGFAKVVA  223 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~  223 (384)
                      +            +.||.|++
T Consensus       126 ~------------~~fD~V~~  134 (236)
T 1zx0_A          126 D------------GHFDGILY  134 (236)
T ss_dssp             T------------TCEEEEEE
T ss_pred             C------------CceEEEEE
Confidence            2            67999998

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.19  E-value=1e-11  Score=110.82  Aligned_cols=96  Identities=15%  Similarity=0.266  Sum_probs=59.3

Q ss_pred             HHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhh
Q 016715          128 EINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS  203 (384)
Q Consensus       128 ~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~  203 (384)
                      .+++.+++.+.. .++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.+++++...+ +++++++|+.+ ++.+
T Consensus        16 ~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~   94 (215)
T 4dzr_A           16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIE   94 (215)
T ss_dssp             HHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHH
T ss_pred             HHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhh
Confidence            455667777765 67889999999999999999998  5599999999999999999876544 78888899887 3321


Q ss_pred             hhhhHHhhhccCCCcceEeeccCccccH
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                      ..       ...+.||+|++|+||....
T Consensus        95 ~~-------~~~~~fD~i~~npp~~~~~  115 (215)
T 4dzr_A           95 RA-------ERGRPWHAIVSNPPYIPTG  115 (215)
T ss_dssp             HH-------HTTCCBSEEEECCCCCC--
T ss_pred             hh-------hccCcccEEEECCCCCCCc
Confidence            00       0126899999999996544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.19  E-value=5e-11  Score=112.85  Aligned_cols=90  Identities=19%  Similarity=0.280  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~  202 (384)
                      ..+++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+   +++++++|+.+.. .
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-~  187 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-K  187 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-G
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-c
Confidence            356667777665456779999999999999999998 7799999999999999999886432   5999999998732 1


Q ss_pred             hhhhhHHhhhccCCCc---ceEeeccCcccc
Q 016715          203 SHMLSLFERRKSSSGF---AKVVANIPFNIS  230 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~---d~Vv~NlPy~i~  230 (384)
                                   +.|   |+|++|+||.-.
T Consensus       188 -------------~~f~~~D~IvsnPPyi~~  205 (284)
T 1nv8_A          188 -------------EKFASIEMILSNPPYVKS  205 (284)
T ss_dssp             -------------GGTTTCCEEEECCCCBCG
T ss_pred             -------------cccCCCCEEEEcCCCCCc
Confidence                         356   999999999643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.18  E-value=1.2e-10  Score=112.95  Aligned_cols=100  Identities=14%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             CcccCCCcccCCHHHHHHHHHH---h-cCCCCCEEEEEcCcchHHHHHHHHcC-------CcEEEEeCCHHHHHHHHHHh
Q 016715          115 PRKSLGQHYMLNSEINDQLAAA---A-AVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERF  183 (384)
Q Consensus       115 ~~~~~gq~fl~~~~~~~~il~~---l-~~~~~~~VLEIG~G~G~lt~~La~~~-------~~V~avE~d~~~~~~a~~~~  183 (384)
                      .....|++ .++..+...|...   + ...++.+|||+|||+|.++..+++..       .+++|+|+++.+++.|+.++
T Consensus       101 ~~~~~g~~-~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~  179 (344)
T 2f8l_A          101 HGIQVNHQ-MTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA  179 (344)
T ss_dssp             SSCCGGGC-CCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH
T ss_pred             cccccCcC-CChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHH
Confidence            44566885 4777776554433   3 44567899999999999999998763       68999999999999999986


Q ss_pred             cCC-CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          184 ASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       184 ~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ... -++.++++|++....             ...||+|++|+||.
T Consensus       180 ~~~g~~~~i~~~D~l~~~~-------------~~~fD~Ii~NPPfg  212 (344)
T 2f8l_A          180 DLQRQKMTLLHQDGLANLL-------------VDPVDVVISDLPVG  212 (344)
T ss_dssp             HHHTCCCEEEESCTTSCCC-------------CCCEEEEEEECCCS
T ss_pred             HhCCCCceEEECCCCCccc-------------cCCccEEEECCCCC
Confidence            522 268999999887432             25799999999973

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.18  E-value=7.3e-11  Score=108.89  Aligned_cols=108  Identities=16%  Similarity=0.213  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      ..+.....+++.+.+.++++|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++...   ++++++++|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~  159 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE  159 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence            44566678889898889999999999999999999998   569999999999999999987533   589999999988


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCc--cccHHHHHHhcccCCCe
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy--~i~~~il~~L~~~g~~~  244 (384)
                      .++++            +.+|.|++|+|.  .+...+...|.++|.++
T Consensus       160 ~~~~~------------~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~  195 (258)
T 2pwy_A          160 AELEE------------AAYDGVALDLMEPWKVLEKAALALKPDRFLV  195 (258)
T ss_dssp             CCCCT------------TCEEEEEEESSCGGGGHHHHHHHEEEEEEEE
T ss_pred             cCCCC------------CCcCEEEECCcCHHHHHHHHHHhCCCCCEEE
Confidence            75432            579999999874  44556666777766543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.18  E-value=1.7e-10  Score=100.86  Aligned_cols=101  Identities=15%  Similarity=0.204  Sum_probs=83.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      .+.+.+.+.+++.+...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...   ++++++++|+.+ .
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~   94 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-A   94 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-H
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-h
Confidence            567888999999999889999999999999999999998889999999999999999987533   589999999876 2


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccccHHHHHH
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ  236 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~  236 (384)
                      +++           .+.+|+|+++.+++....++..
T Consensus        95 ~~~-----------~~~~D~v~~~~~~~~~~~~l~~  119 (192)
T 1l3i_A           95 LCK-----------IPDIDIAVVGGSGGELQEILRI  119 (192)
T ss_dssp             HTT-----------SCCEEEEEESCCTTCHHHHHHH
T ss_pred             ccc-----------CCCCCEEEECCchHHHHHHHHH
Confidence            221           1479999999886555555443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.18  E-value=1.3e-10  Score=108.20  Aligned_cols=91  Identities=22%  Similarity=0.289  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      ..+.+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....   ++++++.+|+.+++++
T Consensus        47 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  126 (273)
T 3bus_A           47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence            356678888888888999999999999999999986 789999999999999999887532   3799999999998764


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCccc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      +            +.||+|+++..++.
T Consensus       127 ~------------~~fD~v~~~~~l~~  141 (273)
T 3bus_A          127 D------------ASFDAVWALESLHH  141 (273)
T ss_dssp             T------------TCEEEEEEESCTTT
T ss_pred             C------------CCccEEEEechhhh
Confidence            3            67999998866543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.17  E-value=1e-10  Score=107.23  Aligned_cols=106  Identities=13%  Similarity=0.181  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhh
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~  203 (384)
                      .......+++.+.+.++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++..  .++++++.+|+.++++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A            6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred             cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence            345667888899999999999999999999999999988999999999999999988753  258999999999887543


Q ss_pred             hhhhHHhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCC
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI  243 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~  243 (384)
                                  +.||+|+++..++..       ..+...|+++|.+
T Consensus        86 ------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  120 (239)
T 1xxl_A           86 ------------DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRF  120 (239)
T ss_dssp             ------------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             ------------CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEE
Confidence                        679999988554322       2334455555544

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.17  E-value=6.7e-11  Score=114.48  Aligned_cols=97  Identities=20%  Similarity=0.194  Sum_probs=74.6

Q ss_pred             ccCCHHHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--C--CeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D--QLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~--~v~~~~gD~~  197 (384)
                      |.......+.+.+.+. ..++.+|||+|||+|.++..++..+++|++||+|+.+++.|++++..+  .  +++++++|+.
T Consensus       134 f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~  213 (332)
T 2igt_A          134 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM  213 (332)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred             chHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHH
Confidence            3444455556666654 446789999999999999999999889999999999999999987632  2  4999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ++....     .   .....||+||+|+|+
T Consensus       214 ~~l~~~-----~---~~~~~fD~Ii~dPP~  235 (332)
T 2igt_A          214 KFIQRE-----E---RRGSTYDIILTDPPK  235 (332)
T ss_dssp             HHHHHH-----H---HHTCCBSEEEECCCS
T ss_pred             HHHHHH-----H---hcCCCceEEEECCcc
Confidence            754210     0   012579999999996

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.17  E-value=1.3e-10  Score=110.10  Aligned_cols=103  Identities=19%  Similarity=0.255  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHH-HHHc-CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNV-LLNA-GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~-La~~-~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~  203 (384)
                      .+++.-...+.+.++++|||||||+|.+|.. +++. +++|+|+|+|+.+++.|+++++.  .++++++++|+.+++  +
T Consensus       109 ~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d  186 (298)
T 3fpf_A          109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--G  186 (298)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--G
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--C
Confidence            3444555677888999999999999987755 4553 88999999999999999998753  368999999998864  2


Q ss_pred             hhhhHHhhhccCCCcceEeeccCc----cccHHHHHHhcccCCCe
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPF----NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy----~i~~~il~~L~~~g~~~  244 (384)
                                  +.||+|+.+.--    .+...+.+.|+++|.++
T Consensus       187 ------------~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lv  219 (298)
T 3fpf_A          187 ------------LEFDVLMVAALAEPKRRVFRNIHRYVDTETRII  219 (298)
T ss_dssp             ------------CCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEE
T ss_pred             ------------CCcCEEEECCCccCHHHHHHHHHHHcCCCcEEE
Confidence                        579999865321    34456667777777654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.17  E-value=5.4e-11  Score=111.03  Aligned_cols=93  Identities=23%  Similarity=0.290  Sum_probs=69.8

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC---CC---CeEEEEccccccchhhh
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS---ID---QLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~---~~---~v~~~~gD~~~~~~~~~  204 (384)
                      +..++...++.+|||+|||+|.++..++++.  .+|+|+|+++.+++.|++++..   ++   +++++++|+.+......
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~  107 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV  107 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence            3444556678899999999999999999984  5999999999999999999865   43   59999999988732100


Q ss_pred             hhhHHhhhccCCCcceEeeccCcccc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                           ......+.||+|++|+||...
T Consensus       108 -----~~~~~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          108 -----EAGLPDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             -----HTTCCTTCEEEEEECCCC---
T ss_pred             -----hhccCCCCcCEEEECCCCcCC
Confidence                 000012579999999999754

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.17  E-value=8.4e-11  Score=110.12  Aligned_cols=109  Identities=20%  Similarity=0.335  Sum_probs=89.4

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC-----CCCeEEEEcc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQED  195 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~-----~~~v~~~~gD  195 (384)
                      ...+.....+++.+.+.++++|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++..     .++++++++|
T Consensus        82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d  161 (280)
T 1i9g_A           82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            356778889999999999999999999999999999986   56999999999999999998753     2589999999


Q ss_pred             ccccchhhhhhhHHhhhccCCCcceEeeccCc--cccHHHHHHhcccCCCe
Q 016715          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy--~i~~~il~~L~~~g~~~  244 (384)
                      +.+.++++            +.+|.|++|+|.  .+...+...|.++|.++
T Consensus       162 ~~~~~~~~------------~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~  200 (280)
T 1i9g_A          162 LADSELPD------------GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLM  200 (280)
T ss_dssp             GGGCCCCT------------TCEEEEEEESSCGGGGHHHHHHHEEEEEEEE
T ss_pred             hHhcCCCC------------CceeEEEECCcCHHHHHHHHHHhCCCCCEEE
Confidence            98875432            579999999763  45566667777776543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.17  E-value=2.2e-10  Score=103.21  Aligned_cols=89  Identities=17%  Similarity=0.314  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC-------CeEEEEcccc
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDFV  197 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~-------~v~~~~gD~~  197 (384)
                      +...+.+++.+...++.+|||||||+|.++..+++.+  .+|+|+|+++.+++.+++++...+       +++++++|+.
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~   94 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT   94 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence            4556677777776778899999999999999999985  599999999999999999876432       7999999987


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ..+..+            +.||+|+++..+
T Consensus        95 ~~~~~~------------~~fD~v~~~~~l  112 (217)
T 3jwh_A           95 YQDKRF------------HGYDAATVIEVI  112 (217)
T ss_dssp             SCCGGG------------CSCSEEEEESCG
T ss_pred             cccccC------------CCcCEEeeHHHH
Confidence            665432            679999987655

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.17  E-value=1.3e-10  Score=109.79  Aligned_cols=106  Identities=16%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHh----cCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccc
Q 016715          127 SEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVK  198 (384)
Q Consensus       127 ~~~~~~il~~l----~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~  198 (384)
                      ....+.+++.+    ...++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++...   .++++++++|+.+
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence            45677888888    7778899999999999999999987 88999999999999999988643   2479999999999


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccc-------cHHHHHHhcccCCCe
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI-------STDVIKQLLPMGDIF  244 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i-------~~~il~~L~~~g~~~  244 (384)
                      +++++            +.||+|+++..++.       ...+.+.|+++|.++
T Consensus       144 ~~~~~------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  184 (297)
T 2o57_A          144 IPCED------------NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA  184 (297)
T ss_dssp             CSSCT------------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCCC------------CCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEE
Confidence            87653            67999998755422       223444556666543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.17  E-value=1e-10  Score=108.06  Aligned_cols=107  Identities=24%  Similarity=0.409  Sum_probs=82.0

Q ss_pred             CHHHHHHHHHHh-----cCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEcccccc
Q 016715          126 NSEINDQLAAAA-----AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKC  199 (384)
Q Consensus       126 ~~~~~~~il~~l-----~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~  199 (384)
                      +....+.+++.+     ...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++++.. .++++++.+|+.++
T Consensus        19 ~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~   98 (263)
T 2yqz_A           19 PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI   98 (263)
T ss_dssp             CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC
T ss_pred             ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC
Confidence            345555566655     456788999999999999999999999999999999999999998732 35899999999988


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCccccH-------HHHHHhcccCCCe
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDIF  244 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~-------~il~~L~~~g~~~  244 (384)
                      ++.+            +.||+|+++..++..+       .+...|.++|.++
T Consensus        99 ~~~~------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~  138 (263)
T 2yqz_A           99 PLPD------------ESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALL  138 (263)
T ss_dssp             CSCT------------TCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCC------------CCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEE
Confidence            7543            5799999987665432       2334555555543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.17  E-value=6.1e-11  Score=111.48  Aligned_cols=114  Identities=17%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             cCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEE
Q 016715          118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQ  193 (384)
Q Consensus       118 ~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~  193 (384)
                      ..+..|+.+....+.+.....+.++++|||+|||+|.++..+++.+  .+|+|+|+++.+++.|++++..+  +++.+++
T Consensus        96 ~~~~~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~  175 (272)
T 3a27_A           96 DVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPIL  175 (272)
T ss_dssp             ETTTSCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred             echhEEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence            3344455665555555444456788999999999999999999984  39999999999999999988654  4899999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccCccc---cHHHHHHhcccCCCe
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI---STDVIKQLLPMGDIF  244 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i---~~~il~~L~~~g~~~  244 (384)
                      +|+.+.+. .            +.||+|+.|+|+..   ...++..|.++|.++
T Consensus       176 ~d~~~~~~-~------------~~~D~Vi~d~p~~~~~~l~~~~~~LkpgG~l~  216 (272)
T 3a27_A          176 ADNRDVEL-K------------DVADRVIMGYVHKTHKFLDKTFEFLKDRGVIH  216 (272)
T ss_dssp             SCGGGCCC-T------------TCEEEEEECCCSSGGGGHHHHHHHEEEEEEEE
T ss_pred             CChHHcCc-c------------CCceEEEECCcccHHHHHHHHHHHcCCCCEEE
Confidence            99988732 1            57999999999733   334455666666543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.17  E-value=6e-11  Score=111.39  Aligned_cols=90  Identities=21%  Similarity=0.394  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~  202 (384)
                      ..+++.+++.+. .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.++++....  ++++++++|+.+.. .
T Consensus        96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~-~  173 (276)
T 2b3t_A           96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL-A  173 (276)
T ss_dssp             HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG-T
T ss_pred             HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc-c
Confidence            346667777765 56789999999999999999976  669999999999999999987532  47999999997742 1


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                                  .+.||+|++|+||...
T Consensus       174 ------------~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          174 ------------GQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             ------------TCCEEEEEECCCCBCT
T ss_pred             ------------cCCccEEEECCCCCCc
Confidence                        2579999999999644

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.17  E-value=9.1e-11  Score=108.35  Aligned_cols=107  Identities=23%  Similarity=0.362  Sum_probs=87.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--C-CeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~-~v~~~~gD~~~  198 (384)
                      ..+.....+++.+.+.++++|||+|||+|.++..+++.   +.+|+++|+++.+++.|++++...  + +++++++|+.+
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence            44666778999999999999999999999999999998   679999999999999999987532  3 49999999986


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCcc--ccHHHHHHhcccCCCe
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDIF  244 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~--i~~~il~~L~~~g~~~  244 (384)
                      . +.            ...+|.|++|+|..  ....+...|.++|.++
T Consensus       157 ~-~~------------~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~  191 (255)
T 3mb5_A          157 G-IE------------EENVDHVILDLPQPERVVEHAAKALKPGGFFV  191 (255)
T ss_dssp             C-CC------------CCSEEEEEECSSCGGGGHHHHHHHEEEEEEEE
T ss_pred             c-cC------------CCCcCEEEECCCCHHHHHHHHHHHcCCCCEEE
Confidence            5 22            25799999998864  5567777777776553

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.17  E-value=1.3e-10  Score=108.16  Aligned_cols=93  Identities=13%  Similarity=0.142  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc
Q 016715          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (384)
Q Consensus       125 ~~~~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~  199 (384)
                      ..+.....+++.+. +.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++...   ++++++++|+.++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  108 (267)
T 3kkz_A           29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL  108 (267)
T ss_dssp             CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC
Confidence            34567777888776 66789999999999999999999854 9999999999999999987643   4799999999988


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ++++            +.||+|+++.+++.
T Consensus       109 ~~~~------------~~fD~i~~~~~~~~  126 (267)
T 3kkz_A          109 PFRN------------EELDLIWSEGAIYN  126 (267)
T ss_dssp             CCCT------------TCEEEEEESSCGGG
T ss_pred             CCCC------------CCEEEEEEcCCcee
Confidence            7543            68999999876643

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.16  E-value=8.6e-11  Score=105.92  Aligned_cols=76  Identities=13%  Similarity=0.284  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccc--hhhhhhhHHhhhc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCH--IRSHMLSLFERRK  213 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~--~~~~~~~~~~~~~  213 (384)
                      .++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.|++++..  .++++++++|+.+++  +.           
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-----------  108 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE-----------  108 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC-----------
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC-----------
Confidence            35789999999999999999987  56999999999999999998753  258999999998854  22           


Q ss_pred             cCCCcceEeeccCc
Q 016715          214 SSSGFAKVVANIPF  227 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy  227 (384)
                       .+.+|.|++|+|.
T Consensus       109 -~~~~D~i~~~~~~  121 (214)
T 1yzh_A          109 -DGEIDRLYLNFSD  121 (214)
T ss_dssp             -TTCCSEEEEESCC
T ss_pred             -CCCCCEEEEECCC
Confidence             2579999999875

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.16  E-value=6.3e-11  Score=113.17  Aligned_cols=86  Identities=12%  Similarity=0.145  Sum_probs=72.9

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (384)
                      .+.+++.+. +.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....   ++++++.+|+.++++.+ 
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-  183 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK-  183 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT-
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC-
Confidence            345667776 778899999999999999999998 899999999999999999987643   37999999999887543 


Q ss_pred             hhhHHhhhccCCCcceEeeccCc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                 +.||+|+++..+
T Consensus       184 -----------~~fD~V~~~~~l  195 (312)
T 3vc1_A          184 -----------GAVTASWNNEST  195 (312)
T ss_dssp             -----------TCEEEEEEESCG
T ss_pred             -----------CCEeEEEECCch
Confidence                       689999987544

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.16  E-value=8.5e-11  Score=104.93  Aligned_cols=76  Identities=22%  Similarity=0.321  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      .++.+|||||||+|.++..+++.+. +|+++|+++.+++.++++....++++++.+|+.++++.+            +.|
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~------------~~f  108 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPS------------ASF  108 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCS------------SCE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCC------------Ccc
Confidence            5678999999999999999999876 899999999999999999876568999999999876543            579


Q ss_pred             ceEeeccCc
Q 016715          219 AKVVANIPF  227 (384)
Q Consensus       219 d~Vv~NlPy  227 (384)
                      |+|+++.++
T Consensus       109 D~v~~~~~~  117 (215)
T 2pxx_A          109 DVVLEKGTL  117 (215)
T ss_dssp             EEEEEESHH
T ss_pred             cEEEECcch
Confidence            999998765

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.16  E-value=1e-10  Score=106.40  Aligned_cols=102  Identities=16%  Similarity=0.105  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcccc-ccchhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV-KCHIRSHML  206 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~-~~~~~~~~~  206 (384)
                      .+.+.++.... .++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++   .++++++++|+. .+++.    
T Consensus        36 ~l~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~d~~~~~~~~----  107 (226)
T 3m33_A           36 LTFDLWLSRLL-TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---APHADVYEWNGKGELPAG----  107 (226)
T ss_dssp             HHHHHHHHHHC-CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---CTTSEEEECCSCSSCCTT----
T ss_pred             HHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---CCCceEEEcchhhccCCc----
Confidence            45555554433 4678999999999999999999999999999999999999988   358999999994 45543    


Q ss_pred             hHHhhhccCCCcceEeecc-CccccHHHHHHhcccCCCe
Q 016715          207 SLFERRKSSSGFAKVVANI-PFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~Nl-Py~i~~~il~~L~~~g~~~  244 (384)
                             ..+.||+|+++. +......+...|+++|.++
T Consensus       108 -------~~~~fD~v~~~~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          108 -------LGAPFGLIVSRRGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             -------CCCCEEEEEEESCCSGGGGGHHHHEEEEEEEE
T ss_pred             -------CCCCEEEEEeCCCHHHHHHHHHHHcCCCcEEE
Confidence                   026899999984 3355566777777777654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.16  E-value=7.5e-11  Score=107.67  Aligned_cols=106  Identities=11%  Similarity=0.111  Sum_probs=78.0

Q ss_pred             HHHHH---HHHhcCCCCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh
Q 016715          129 INDQL---AAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       129 ~~~~i---l~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (384)
                      +.+.+   ++.+.+.++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.++++....+++.++.+|+.+.....
T Consensus        59 ~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~  138 (230)
T 1fbn_A           59 LAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYA  138 (230)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGT
T ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccccc
Confidence            34556   44455667889999999999999999988 4 6999999999999999998876679999999998721100


Q ss_pred             hhhhHHhhhccCCCcceEeeccCcc-----ccHHHHHHhcccCCC
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFN-----ISTDVIKQLLPMGDI  243 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~-----i~~~il~~L~~~g~~  243 (384)
                         +      ....||+|+.+++..     +...+...|.++|.+
T Consensus       139 ---~------~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l  174 (230)
T 1fbn_A          139 ---N------IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYG  174 (230)
T ss_dssp             ---T------TSCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             ---c------cCccEEEEEEecCChhHHHHHHHHHHHhCCCCcEE
Confidence               0      114799999886643     133444566666654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.16  E-value=3.2e-11  Score=119.66  Aligned_cols=94  Identities=21%  Similarity=0.299  Sum_probs=75.2

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeE
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLK  190 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~  190 (384)
                      ..++..|| |.+++.+++.|++.+...++.+|||+|||+|.++..++++   +.+++|+|+|+.+++.|       .+++
T Consensus        13 ~~~~~~g~-~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~   84 (421)
T 2ih2_A           13 SAPRSLGR-VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAE   84 (421)
T ss_dssp             ---------CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEE
T ss_pred             hhcccCce-EeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCc
Confidence            34566788 8899999999999998766779999999999999999985   46999999999998776       4789


Q ss_pred             EEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       191 ~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ++++|+.+...             .+.||+|++|+||.
T Consensus        85 ~~~~D~~~~~~-------------~~~fD~Ii~NPPy~  109 (421)
T 2ih2_A           85 GILADFLLWEP-------------GEAFDLILGNPPYG  109 (421)
T ss_dssp             EEESCGGGCCC-------------SSCEEEEEECCCCC
T ss_pred             EEeCChhhcCc-------------cCCCCEEEECcCcc
Confidence            99999988642             25799999999994

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.16  E-value=6.7e-11  Score=105.79  Aligned_cols=90  Identities=19%  Similarity=0.325  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      +.+.+.+++.+...++ +|||||||+|.++..+++. +.+|+++|+++.+++.+++++...   ++++++++|+.++++.
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            4677888888887766 9999999999999999998 669999999999999999987642   4899999999998764


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCccc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      +            +.||+|+++..++.
T Consensus       109 ~------------~~~D~v~~~~~l~~  123 (219)
T 3dlc_A          109 D------------NYADLIVSRGSVFF  123 (219)
T ss_dssp             T------------TCEEEEEEESCGGG
T ss_pred             c------------ccccEEEECchHhh
Confidence            3            68999999866543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.15  E-value=1.3e-10  Score=106.72  Aligned_cols=109  Identities=16%  Similarity=0.149  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          127 SEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       127 ~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      ......+++.+.   +++|++|||+|||+|..|..+++.   ..+|+|+|+++.+++.+.+......|+.++.+|+....
T Consensus        59 skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~  138 (232)
T 3id6_C           59 SKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQ  138 (232)
T ss_dssp             CHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGG
T ss_pred             HHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccch
Confidence            456677777665   789999999999999999999986   34999999999987665544433468999999998754


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccccHHHH----H-HhcccCCCe
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI----K-QLLPMGDIF  244 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il----~-~L~~~g~~~  244 (384)
                      ....         ..+.+|+|++|.+......++    . .|+++|.++
T Consensus       139 ~~~~---------~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lv  178 (232)
T 3id6_C          139 SYKS---------VVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDML  178 (232)
T ss_dssp             GTTT---------TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhc---------cccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEE
Confidence            2210         125799999998874443333    2 466666543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.15  E-value=9.6e-11  Score=108.32  Aligned_cols=82  Identities=20%  Similarity=0.229  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc---chhhhhhhHHhhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC---HIRSHMLSLFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~---~~~~~~~~~~~~~  212 (384)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+++.+++.|++++...   ++++++++|+.+.   ++..         
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---------  135 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE---------  135 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT---------
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhc---------
Confidence            4679999999999999999876  679999999999999999987643   2599999998762   1110         


Q ss_pred             ccCCCcceEeeccCccccH
Q 016715          213 KSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~i~~  231 (384)
                      .....||+|++|+||+...
T Consensus       136 ~~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          136 ESEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CCSCCBSEEEECCCCC---
T ss_pred             ccCCcccEEEECCCCccCc
Confidence            0014799999999997554

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.15  E-value=1.6e-10  Score=106.18  Aligned_cols=107  Identities=14%  Similarity=0.139  Sum_probs=81.4

Q ss_pred             HHHHHHHH---HhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch
Q 016715          128 EINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (384)
Q Consensus       128 ~~~~~il~---~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~  201 (384)
                      ++.+.|+.   .+.+++|++|||+|||+|+++..+++. |  .+|+|+|++++|++.++++....+|+..+.+|+.....
T Consensus        61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~  140 (233)
T 4df3_A           61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEK  140 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGG
T ss_pred             HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccc
Confidence            34555554   345789999999999999999999997 4  48999999999999999998777899999999876543


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCccccH-----HHHHHhcccCCC
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDI  243 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~-----~il~~L~~~g~~  243 (384)
                      ..         .....+|+|++++++....     .+...|+++|.+
T Consensus       141 ~~---------~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~l  178 (233)
T 4df3_A          141 YR---------HLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYM  178 (233)
T ss_dssp             GT---------TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEE
T ss_pred             cc---------cccceEEEEEEeccCChhHHHHHHHHHHhccCCCEE
Confidence            21         1235789999988876433     233456676654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.15  E-value=1.4e-10  Score=103.55  Aligned_cols=92  Identities=22%  Similarity=0.240  Sum_probs=72.6

Q ss_pred             HHHHHHHhc--CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~--~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~  204 (384)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.+++++...  .+++++++|+.+..    
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----  122 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV----  122 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC----
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC----
Confidence            344444443  45788999999999999999998865 9999999999999999987643  35999999997742    


Q ss_pred             hhhHHhhhccCCCcceEeeccCccccHHHHH
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~  235 (384)
                                .+.||+|++|.+++....++.
T Consensus       123 ----------~~~fD~i~~~~~~~~~~~~l~  143 (205)
T 3grz_A          123 ----------DGKFDLIVANILAEILLDLIP  143 (205)
T ss_dssp             ----------CSCEEEEEEESCHHHHHHHGG
T ss_pred             ----------CCCceEEEECCcHHHHHHHHH
Confidence                      257999999998866544443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.14  E-value=9.6e-11  Score=110.44  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      ......+.+.+  .++++|||+|||+|.++..+++.++ +|+|+|+++.+++.|++++..+   ++++++++|+.++...
T Consensus       113 ~~~~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~  190 (278)
T 2frn_A          113 VKERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE  190 (278)
T ss_dssp             HHHHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC
T ss_pred             HHHHHHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhccc
Confidence            35555565554  4688999999999999999999987 5999999999999999987643   2599999999987642


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCccc---cHHHHHHhcccCCCe
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNI---STDVIKQLLPMGDIF  244 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i---~~~il~~L~~~g~~~  244 (384)
                                   ..||+|++|+|+..   ...+...|+++|.++
T Consensus       191 -------------~~fD~Vi~~~p~~~~~~l~~~~~~LkpgG~l~  222 (278)
T 2frn_A          191 -------------NIADRILMGYVVRTHEFIPKALSIAKDGAIIH  222 (278)
T ss_dssp             -------------SCEEEEEECCCSSGGGGHHHHHHHEEEEEEEE
T ss_pred             -------------CCccEEEECCchhHHHHHHHHHHHCCCCeEEE
Confidence                         57999999999753   345566677766543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.14  E-value=1.1e-10  Score=107.61  Aligned_cols=86  Identities=17%  Similarity=0.229  Sum_probs=72.5

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      ..+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.++++.. .++++++.+|+.++++.+      
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~------  106 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIAIEP------  106 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCCCCT------
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCCCCC------
Confidence            3455556666789999999999999999999987 99999999999999999876 468999999999887543      


Q ss_pred             hhhccCCCcceEeeccCccc
Q 016715          210 ERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~NlPy~i  229 (384)
                            +.||+|+++..++.
T Consensus       107 ------~~fD~v~~~~~l~~  120 (253)
T 3g5l_A          107 ------DAYNVVLSSLALHY  120 (253)
T ss_dssp             ------TCEEEEEEESCGGG
T ss_pred             ------CCeEEEEEchhhhh
Confidence                  68999998866533

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.14  E-value=1.5e-10  Score=106.73  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~  204 (384)
                      ......+++.+...++.+|||||||+|.++..+++.  +.+|+++|+++.+++.++++.   ++++++.+|+.+++ .+ 
T Consensus        19 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~-   93 (259)
T 2p35_A           19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---PNTNFGKADLATWK-PA-   93 (259)
T ss_dssp             GHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---TTSEEEECCTTTCC-CS-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---CCcEEEECChhhcC-cc-
Confidence            456667888887778899999999999999999998  789999999999999999883   58999999999876 32 


Q ss_pred             hhhHHhhhccCCCcceEeeccCcccc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                                 +.||+|+++..++..
T Consensus        94 -----------~~fD~v~~~~~l~~~  108 (259)
T 2p35_A           94 -----------QKADLLYANAVFQWV  108 (259)
T ss_dssp             -----------SCEEEEEEESCGGGS
T ss_pred             -----------CCcCEEEEeCchhhC
Confidence                       579999998877554

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.14  E-value=6.6e-10  Score=101.61  Aligned_cols=103  Identities=13%  Similarity=0.226  Sum_probs=80.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~--~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~  199 (384)
                      ..+...+.+...+...++.+|||||||+|+.+..+++  .+.+|+++|+++.+++.|++++...   ++++++++|+.+.
T Consensus        55 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (232)
T 3ntv_A           55 VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ  134 (232)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence            4677777777777766788999999999999999998  4679999999999999999988643   3899999999875


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHh
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL  237 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L  237 (384)
                      ....          ..+.||+|+.+.+......++..+
T Consensus       135 ~~~~----------~~~~fD~V~~~~~~~~~~~~l~~~  162 (232)
T 3ntv_A          135 FENV----------NDKVYDMIFIDAAKAQSKKFFEIY  162 (232)
T ss_dssp             HHHH----------TTSCEEEEEEETTSSSHHHHHHHH
T ss_pred             HHhh----------ccCCccEEEEcCcHHHHHHHHHHH
Confidence            3201          126899999987765555555433

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.14  E-value=7.1e-11  Score=111.09  Aligned_cols=83  Identities=18%  Similarity=0.270  Sum_probs=70.2

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhh
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      +++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...+ +++++++|+.+.++.         
T Consensus       112 ~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---------  182 (286)
T 3m70_A          112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQ---------  182 (286)
T ss_dssp             HHHHHHHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCC---------
T ss_pred             HHHHhhccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccccc---------
Confidence            3344444478899999999999999999999999999999999999999886544 899999999987652         


Q ss_pred             hccCCCcceEeeccCcc
Q 016715          212 RKSSSGFAKVVANIPFN  228 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~  228 (384)
                          +.||+|+++.+++
T Consensus       183 ----~~fD~i~~~~~~~  195 (286)
T 3m70_A          183 ----ENYDFIVSTVVFM  195 (286)
T ss_dssp             ----SCEEEEEECSSGG
T ss_pred             ----CCccEEEEccchh
Confidence                6899999987764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.14  E-value=2.2e-10  Score=103.36  Aligned_cols=83  Identities=19%  Similarity=0.235  Sum_probs=68.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhH
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      .+.+.+.+.  ++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++.... ++++++++|+.++++.+     
T Consensus        29 ~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-----  101 (227)
T 1ve3_A           29 EPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED-----  101 (227)
T ss_dssp             HHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT-----
T ss_pred             HHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCC-----
Confidence            333444333  4789999999999999999999889999999999999999987543 58999999999876432     


Q ss_pred             HhhhccCCCcceEeeccC
Q 016715          209 FERRKSSSGFAKVVANIP  226 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlP  226 (384)
                             +.+|+|+++.+
T Consensus       102 -------~~~D~v~~~~~  112 (227)
T 1ve3_A          102 -------KTFDYVIFIDS  112 (227)
T ss_dssp             -------TCEEEEEEESC
T ss_pred             -------CcEEEEEEcCc
Confidence                   57999999988

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.13  E-value=9.9e-11  Score=109.92  Aligned_cols=104  Identities=18%  Similarity=0.321  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccch
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI  201 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~  201 (384)
                      .....+++.+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++...   ++++++.+|+.+ .+
T Consensus        97 ~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~  175 (275)
T 1yb2_A           97 IDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FI  175 (275)
T ss_dssp             ---------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CC
T ss_pred             hhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cC
Confidence            33456777788888999999999999999999987   679999999999999999998654   589999999987 32


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCc--cccHHHHHHhcccCCCe
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy--~i~~~il~~L~~~g~~~  244 (384)
                      +            .+.||.|++++|.  .+...+...|+++|.++
T Consensus       176 ~------------~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~  208 (275)
T 1yb2_A          176 S------------DQMYDAVIADIPDPWNHVQKIASMMKPGSVAT  208 (275)
T ss_dssp             C------------SCCEEEEEECCSCGGGSHHHHHHTEEEEEEEE
T ss_pred             c------------CCCccEEEEcCcCHHHHHHHHHHHcCCCCEEE
Confidence            2            2579999999874  45556666777766543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.13  E-value=2.9e-10  Score=104.82  Aligned_cols=93  Identities=13%  Similarity=0.150  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHHh-cCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc
Q 016715          125 LNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (384)
Q Consensus       125 ~~~~~~~~il~~l-~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~  199 (384)
                      ..+.....+++.+ .+.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.++++....   ++++++++|+.++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  108 (257)
T 3f4k_A           29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL  108 (257)
T ss_dssp             CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence            3456777777777 456788999999999999999999854 9999999999999999987643   3599999999888


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ++.+            +.||+|+++..++.
T Consensus       109 ~~~~------------~~fD~v~~~~~l~~  126 (257)
T 3f4k_A          109 PFQN------------EELDLIWSEGAIYN  126 (257)
T ss_dssp             SSCT------------TCEEEEEEESCSCC
T ss_pred             CCCC------------CCEEEEEecChHhh
Confidence            7543            68999998866543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.13  E-value=6e-11  Score=109.61  Aligned_cols=94  Identities=19%  Similarity=0.176  Sum_probs=68.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcCC---C---C----------
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---D---Q----------  188 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~~---~---~----------  188 (384)
                      +++.+++.+...++.+|||+|||+|.++..++..    +.+|+|+|+|+.+++.|++++...   +   +          
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~  118 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER  118 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence            4445555444446679999999999999999987    568999999999999999876543   1   1          


Q ss_pred             ---------------eE-------------EEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          189 ---------------LK-------------VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       189 ---------------v~-------------~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                                     ++             ++++|+.+.......       .....||+|++|+||..
T Consensus       119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-------~~~~~fD~Iv~npp~~~  180 (250)
T 1o9g_A          119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV-------LAGSAPDVVLTDLPYGE  180 (250)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH-------HTTCCCSEEEEECCGGG
T ss_pred             cccccchhhhhhhhhhhhhccccccccccceeecccccccccccc-------cCCCCceEEEeCCCeec
Confidence                           66             999998774311000       01147999999999843

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.12  E-value=1.8e-10  Score=111.29  Aligned_cols=110  Identities=19%  Similarity=0.245  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcC-------------CCC
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-------------IDQ  188 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~-------------~~~  188 (384)
                      ..+.....++..+.+.++++|||+|||+|.++..+++. +  .+|+++|+++.+++.|++++..             .++
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            55677888999999999999999999999999999987 5  6899999999999999998752             258


Q ss_pred             eEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc--cccHHHHHHhcccCCCe
Q 016715          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       189 v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy--~i~~~il~~L~~~g~~~  244 (384)
                      ++++++|+.+....-          ..+.||.|++|+|.  .....+...|.++|.++
T Consensus       169 v~~~~~d~~~~~~~~----------~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv  216 (336)
T 2b25_A          169 VDFIHKDISGATEDI----------KSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCA  216 (336)
T ss_dssp             EEEEESCTTCCC-----------------EEEEEECSSSTTTTHHHHGGGEEEEEEEE
T ss_pred             eEEEECChHHccccc----------CCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEE
Confidence            999999998863110          11469999998764  33455666667766553

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.12  E-value=3.8e-10  Score=103.39  Aligned_cols=108  Identities=18%  Similarity=0.269  Sum_probs=87.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      +..+.....++..+...++++|||+|||+|.++..+++.+.+|+++|+++.+++.++++....   ++++++.+|+.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred             cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence            345667778899998889999999999999999999998889999999999999999987532   58999999998753


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCc--cccHHHHHHhcccCCC
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDI  243 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy--~i~~~il~~L~~~g~~  243 (384)
                      ..+            ..+|+|++|+|.  .....+...|.++|.+
T Consensus       154 ~~~------------~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l  186 (248)
T 2yvl_A          154 VPE------------GIFHAAFVDVREPWHYLEKVHKSLMEGAPV  186 (248)
T ss_dssp             CCT------------TCBSEEEECSSCGGGGHHHHHHHBCTTCEE
T ss_pred             cCC------------CcccEEEECCcCHHHHHHHHHHHcCCCCEE
Confidence            221            479999999874  4445666667776654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.12  E-value=2e-10  Score=101.38  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=70.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHH
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      .+++.+...++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++...  .++++++.+|+.+.++ +      
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~------   95 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-D------   95 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-C------
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-C------
Confidence            455666666788999999999999999999999999999999999999988753  2479999999998765 2      


Q ss_pred             hhhccCCCcceEeeccCcc
Q 016715          210 ERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~NlPy~  228 (384)
                            +.||+|+++.+++
T Consensus        96 ------~~~D~v~~~~~l~  108 (199)
T 2xvm_A           96 ------RQYDFILSTVVLM  108 (199)
T ss_dssp             ------CCEEEEEEESCGG
T ss_pred             ------CCceEEEEcchhh
Confidence                  5799999986654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.11  E-value=1.7e-10  Score=113.09  Aligned_cols=116  Identities=15%  Similarity=0.108  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~  204 (384)
                      ..+.+.+++.+... +++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..+  ++++++.+|+.++.....
T Consensus       200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~  278 (369)
T 3bt7_A          200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN  278 (369)
T ss_dssp             HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHS
T ss_pred             HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHh
Confidence            34555666666554 578999999999999999987789999999999999999988643  489999999987532100


Q ss_pred             ----hhhHHhhhccCCCcceEeeccCcc-ccHHHHHHhcccCCC
Q 016715          205 ----MLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDI  243 (384)
Q Consensus       205 ----~~~~~~~~~~~~~~d~Vv~NlPy~-i~~~il~~L~~~g~~  243 (384)
                          +..+.........||+|+.|+|+. ....++..+.+++.+
T Consensus       279 ~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~i  322 (369)
T 3bt7_A          279 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRI  322 (369)
T ss_dssp             SCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEE
T ss_pred             hccccccccccccccCCCCEEEECcCccccHHHHHHHHhCCCEE
Confidence                000000000002699999999995 566788888765543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.11  E-value=1.6e-10  Score=104.45  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=70.6

Q ss_pred             cCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          138 AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+.++++|||+|||+|.++..+++..  .+|+|+|+++.|++.+.+.....+++.++.+|+.+......         ..
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~---------~~  124 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSG---------IV  124 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTT---------TC
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcc---------cc
Confidence            45678899999999999999999874  68999999999887666555444689999999877421000         12


Q ss_pred             CCcceEeeccCcccc-----HHHHHHhcccCCCe
Q 016715          216 SGFAKVVANIPFNIS-----TDVIKQLLPMGDIF  244 (384)
Q Consensus       216 ~~~d~Vv~NlPy~i~-----~~il~~L~~~g~~~  244 (384)
                      +.||.|++|++....     ..+.+.|+++|.++
T Consensus       125 ~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~  158 (210)
T 1nt2_A          125 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV  158 (210)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             cceeEEEEeccChhHHHHHHHHHHHHhCCCCEEE
Confidence            579999999765422     23445666766553

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.11  E-value=9.5e-11  Score=105.40  Aligned_cols=87  Identities=21%  Similarity=0.342  Sum_probs=73.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~  204 (384)
                      .+.+++.+.+.++.+|||||||+|.++..+++.+   .+|+++|+++.+++.+++++..  .++++++.+|+.++++.+ 
T Consensus        26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-  104 (219)
T 3dh0_A           26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD-  104 (219)
T ss_dssp             HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS-
T ss_pred             HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC-
Confidence            3667788888888999999999999999999985   6999999999999999998753  247999999999887543 


Q ss_pred             hhhHHhhhccCCCcceEeeccCcc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                                 +.||+|+++..++
T Consensus       105 -----------~~fD~v~~~~~l~  117 (219)
T 3dh0_A          105 -----------NTVDFIFMAFTFH  117 (219)
T ss_dssp             -----------SCEEEEEEESCGG
T ss_pred             -----------CCeeEEEeehhhh
Confidence                       6799999886653

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.11  E-value=2.2e-10  Score=103.50  Aligned_cols=76  Identities=16%  Similarity=0.241  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ++.+|||||||+|.++..+++.  +.+|+|||+++.+++.|++++..  .+|++++++|+.+++.  .+        ..+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~--~~--------~~~  107 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD--VF--------EPG  107 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH--HC--------CTT
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh--hc--------CcC
Confidence            5679999999999999999987  67999999999999999998753  3589999999988531  00        125


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      .+|.|+.|.|
T Consensus       108 ~~d~v~~~~~  117 (213)
T 2fca_A          108 EVKRVYLNFS  117 (213)
T ss_dssp             SCCEEEEESC
T ss_pred             CcCEEEEECC
Confidence            7899988865

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.11  E-value=2.7e-10  Score=107.25  Aligned_cols=92  Identities=16%  Similarity=0.276  Sum_probs=77.8

Q ss_pred             ccCCHHHHHHHHHHh-cCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l-~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~  197 (384)
                      +..++.....+++.+ ...++.+|||||||+|.++..+++.   +.+|+|+|+++.+++.+++++...+ +++++++|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~   82 (284)
T 3gu3_A            3 LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT   82 (284)
T ss_dssp             TTCCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred             cccchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh
Confidence            445678888888877 4567889999999999999999987   5799999999999999999986544 8999999999


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +++++             +.||+|+++..+
T Consensus        83 ~~~~~-------------~~fD~v~~~~~l   99 (284)
T 3gu3_A           83 EIELN-------------DKYDIAICHAFL   99 (284)
T ss_dssp             TCCCS-------------SCEEEEEEESCG
T ss_pred             hcCcC-------------CCeeEEEECChh
Confidence            87653             579999988654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.11  E-value=2e-10  Score=113.65  Aligned_cols=93  Identities=13%  Similarity=0.210  Sum_probs=80.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC---------------------------------------
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA---------------------------------------  164 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~---------------------------------------  164 (384)
                      -..+.+++.|+......++..|||++||+|++...++..+.                                       
T Consensus       184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             SCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            45788999999999998899999999999999998887643                                       


Q ss_pred             -cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          165 -TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       165 -~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                       +|+|+|+|+.+++.|++++...   ++++++++|+.+++..             ..+|+||+|+||..
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-------------~~fD~Iv~NPPYg~  319 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-------------DEYGVVVANPPYGE  319 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-------------CCSCEEEECCCCCC
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-------------CCCCEEEECCCCcc
Confidence             4999999999999999998643   2699999999987643             47999999999954

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.11  E-value=5.9e-10  Score=106.45  Aligned_cols=103  Identities=16%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      ...++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....   ++++++.+|+.+++  
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--  153 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--  153 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--
Confidence            345667777778888999999999999999999988 899999999999999999987643   36999999997763  


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCcccc---------HHHHHHhcccCCCe
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNIS---------TDVIKQLLPMGDIF  244 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~---------~~il~~L~~~g~~~  244 (384)
                                   +.||+|+++..++..         ..+...|+++|.++
T Consensus       154 -------------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  191 (318)
T 2fk8_A          154 -------------EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMT  191 (318)
T ss_dssp             -------------CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             -------------CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEE
Confidence                         478999987544222         23334556666554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.10  E-value=2.6e-10  Score=106.97  Aligned_cols=107  Identities=20%  Similarity=0.318  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      ..+.....++..+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++...   ++++++.+|+.+
T Consensus        96 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  175 (277)
T 1o54_A           96 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  175 (277)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            34556678888899889999999999999999999987   469999999999999999987643   479999999987


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCc--cccHHHHHHhcccCCCe
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy--~i~~~il~~L~~~g~~~  244 (384)
                      . ++            .+.||+|++|+|.  .+...+...|.++|.++
T Consensus       176 ~-~~------------~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~  210 (277)
T 1o54_A          176 G-FD------------EKDVDALFLDVPDPWNYIDKCWEALKGGGRFA  210 (277)
T ss_dssp             C-CS------------CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEE
T ss_pred             c-cc------------CCccCEEEECCcCHHHHHHHHHHHcCCCCEEE
Confidence            6 22            1579999999886  45556666777766543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.10  E-value=1.4e-10  Score=103.09  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=63.0

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      +.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.   ++++++++|+.++++.+            +.||+|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~~------------~~fD~v  106 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH---PSVTFHHGTITDLSDSP------------KRWAGL  106 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC---TTSEEECCCGGGGGGSC------------CCEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC---CCCeEEeCcccccccCC------------CCeEEE
Confidence            679999999999999999999999999999999999999884   58999999999877543            689999


Q ss_pred             eeccCc
Q 016715          222 VANIPF  227 (384)
Q Consensus       222 v~NlPy  227 (384)
                      +++..+
T Consensus       107 ~~~~~l  112 (203)
T 3h2b_A          107 LAWYSL  112 (203)
T ss_dssp             EEESSS
T ss_pred             EehhhH
Confidence            987544

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.10  E-value=7.1e-10  Score=114.03  Aligned_cols=103  Identities=13%  Similarity=0.069  Sum_probs=80.5

Q ss_pred             cccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--------------------CCcEEEEeCCHHH
Q 016715          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--------------------GATVLAIEKDQHM  175 (384)
Q Consensus       116 ~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--------------------~~~V~avE~d~~~  175 (384)
                      ++..|| |.+++.+++.|++.+.+.++.+|||.+||+|.+...+++.                    ..+++|+|+++.+
T Consensus       145 ~~~~G~-fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~  223 (541)
T 2ar0_A          145 KSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT  223 (541)
T ss_dssp             -----C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHH
T ss_pred             cccCCe-eeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHH
Confidence            456788 7799999999999999888899999999999999888764                    1379999999999


Q ss_pred             HHHHHHHhcCC--CC-----eEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          176 VGLVRERFASI--DQ-----LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       176 ~~~a~~~~~~~--~~-----v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      ++.|+.++...  ++     +.+.++|++..+..           ..+.||+|++|+||...
T Consensus       224 ~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~-----------~~~~fD~Vv~NPPf~~~  274 (541)
T 2ar0_A          224 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-----------NLPKAHIVATNPPFGSA  274 (541)
T ss_dssp             HHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH-----------TSCCEEEEEECCCCTTC
T ss_pred             HHHHHHHHHHhCCCccccccCCeEeCCCcccccc-----------cccCCeEEEECCCcccc
Confidence            99999886532  23     78999998875421           12579999999999543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.10  E-value=4.1e-10  Score=103.54  Aligned_cols=83  Identities=22%  Similarity=0.300  Sum_probs=68.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .++.++......++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++.... .+++++++|+.++++.     
T Consensus        29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-----  103 (252)
T 1wzn_A           29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-----  103 (252)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-----
T ss_pred             HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-----
Confidence            4455666655567789999999999999999999999999999999999999987643 3799999999987643     


Q ss_pred             HHhhhccCCCcceEeec
Q 016715          208 LFERRKSSSGFAKVVAN  224 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~N  224 (384)
                              +.||+|+++
T Consensus       104 --------~~fD~v~~~  112 (252)
T 1wzn_A          104 --------NEFDAVTMF  112 (252)
T ss_dssp             --------SCEEEEEEC
T ss_pred             --------CCccEEEEc
Confidence                    468999853

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.10  E-value=2e-10  Score=111.50  Aligned_cols=103  Identities=18%  Similarity=0.334  Sum_probs=78.7

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (384)
                      +.+.|.+.+...++.+|||||||+|.++..+++.++ +|+|+|+++ +++.|++++..+   ++++++++|+.++++++ 
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-  129 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV-  129 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC-
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC-
Confidence            345566666667889999999999999999999876 899999996 999999887543   58999999999886542 


Q ss_pred             hhhHHhhhccCCCcceEeecc-Ccccc-----HHH----HHHhcccCCCe
Q 016715          205 MLSLFERRKSSSGFAKVVANI-PFNIS-----TDV----IKQLLPMGDIF  244 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~Nl-Py~i~-----~~i----l~~L~~~g~~~  244 (384)
                                 +.+|+|+++. +|.+.     ..+    .+.|+++|.++
T Consensus       130 -----------~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 -----------EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             -----------SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             -----------CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence                       5799999986 55331     222    34566666654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.10  E-value=3.4e-10  Score=106.36  Aligned_cols=86  Identities=14%  Similarity=0.178  Sum_probs=70.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc-hhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH-IRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~-~~~~~  205 (384)
                      +..+++.+... +.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++++...   ++++++++|+.+++ +.   
T Consensus        58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---  133 (285)
T 4htf_A           58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL---  133 (285)
T ss_dssp             HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC---
T ss_pred             HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc---
Confidence            34455555544 679999999999999999999999999999999999999988653   47999999999876 22   


Q ss_pred             hhHHhhhccCCCcceEeeccCcc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                               .+.||+|+++..++
T Consensus       134 ---------~~~fD~v~~~~~l~  147 (285)
T 4htf_A          134 ---------ETPVDLILFHAVLE  147 (285)
T ss_dssp             ---------SSCEEEEEEESCGG
T ss_pred             ---------CCCceEEEECchhh
Confidence                     26899999886653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.10  E-value=2.5e-10  Score=103.64  Aligned_cols=108  Identities=12%  Similarity=0.119  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHh---cCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          127 SEINDQLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       127 ~~~~~~il~~l---~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      +...+.++..+   .+.++++|||+|||+|.++..+++. +  .+|+|+|+++.+++.++++....++++++++|+.+..
T Consensus        56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~  135 (227)
T 1g8a_A           56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE  135 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG
T ss_pred             hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcc
Confidence            34556664433   3668899999999999999999987 3  6999999999999999998876679999999998743


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccc-----cHHHHHHhcccCCC
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI-----STDVIKQLLPMGDI  243 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i-----~~~il~~L~~~g~~  243 (384)
                      ....         ..+.||+|+++.|...     ...+...|+++|.+
T Consensus       136 ~~~~---------~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l  174 (227)
T 1g8a_A          136 EYRA---------LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYG  174 (227)
T ss_dssp             GGTT---------TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             hhhc---------ccCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEE
Confidence            2110         1247999999987432     22334455666544

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.09  E-value=2.3e-10  Score=108.39  Aligned_cols=84  Identities=27%  Similarity=0.400  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEccccccc
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCH  200 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-----~~v~~~~gD~~~~~  200 (384)
                      .......+++.+...++ +|||||||+|.++..+++.+.+|+|+|+++.+++.+++++...     .+++++++|+.+++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           68 GTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             ccHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            46677888888876544 9999999999999999999999999999999999999988654     47999999999987


Q ss_pred             hhhhhhhHHhhhccCCCcceEee
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVA  223 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~  223 (384)
                      +.             +.||.|++
T Consensus       147 ~~-------------~~fD~v~~  156 (299)
T 3g2m_A          147 LD-------------KRFGTVVI  156 (299)
T ss_dssp             CS-------------CCEEEEEE
T ss_pred             cC-------------CCcCEEEE
Confidence            52             57998874

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.09  E-value=2e-10  Score=104.46  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ++.+|||||||+|.++..+++.  +.+|+|||+++.+++.|+++...  .+|++++++|+.++...     .+    ..+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~-----~~----~~~  104 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHK-----MI----PDN  104 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHH-----HS----CTT
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-----Hc----CCC
Confidence            5789999999999999999987  45799999999999999988753  34899999999884110     00    126


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      .+|.|+.|.
T Consensus       105 ~~d~v~~~~  113 (218)
T 3dxy_A          105 SLRMVQLFF  113 (218)
T ss_dssp             CEEEEEEES
T ss_pred             ChheEEEeC
Confidence            799999983

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.09  E-value=8.8e-10  Score=103.50  Aligned_cols=103  Identities=16%  Similarity=0.176  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~-~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (384)
                      ..++.+++.+.+.++.+|||||||+|.++..+++ .+.+|+|+|+++.+++.+++++...   ++++++.+|+.+++   
T Consensus        51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---  127 (287)
T 1kpg_A           51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---  127 (287)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence            3556677777788899999999999999999995 5889999999999999999987643   48999999997653   


Q ss_pred             hhhhHHhhhccCCCcceEeeccCcc-c--------cHHHHHHhcccCCCee
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFN-I--------STDVIKQLLPMGDIFS  245 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~-i--------~~~il~~L~~~g~~~~  245 (384)
                                  +.||+|+++..++ +        ...+...|+++|.++.
T Consensus       128 ------------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~  166 (287)
T 1kpg_A          128 ------------EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL  166 (287)
T ss_dssp             ------------CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             ------------CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence                        4689999875442 2        1233445666665543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.09  E-value=2.9e-10  Score=112.10  Aligned_cols=92  Identities=13%  Similarity=0.187  Sum_probs=79.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC---------------------------------------
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA---------------------------------------  164 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~---------------------------------------  164 (384)
                      -..+.+++.|+......++..|||.+||+|++...++..+.                                       
T Consensus       177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            35688999999999998999999999999999998887643                                       


Q ss_pred             -cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          165 -TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       165 -~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                       +|+|+|+|+.+++.|++++...   +.++++++|+.+++..             ..+|+||+|+||.
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-------------~~fD~Iv~NPPYG  311 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-------------KINGVLISNPPYG  311 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-------------CCSCEEEECCCCT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-------------CCcCEEEECCchh
Confidence             4999999999999999998643   2699999999997643             4789999999995

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.09  E-value=2e-10  Score=102.40  Aligned_cols=90  Identities=12%  Similarity=0.095  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHhc-CCCCCEEEEEcCcchHHH-HHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchh
Q 016715          126 NSEINDQLAAAAA-VQEGDIVLEIGPGTGSLT-NVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       126 ~~~~~~~il~~l~-~~~~~~VLEIG~G~G~lt-~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~  202 (384)
                      +.....++++.+. ..++.+|||+|||+|.++ ..++..+.+|+|+|+++.+++.++++... ..+++++++|+.+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~   86 (209)
T 2p8j_A            7 RQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFK   86 (209)
T ss_dssp             SCTHHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSC
T ss_pred             hhhhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCC
Confidence            3334444554443 446789999999999984 45566688999999999999999988653 24789999999987754


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +            +.||.|+++..+
T Consensus        87 ~------------~~fD~v~~~~~l   99 (209)
T 2p8j_A           87 D------------ESMSFVYSYGTI   99 (209)
T ss_dssp             T------------TCEEEEEECSCG
T ss_pred             C------------CceeEEEEcChH
Confidence            3            579999987443

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.08  E-value=3.1e-10  Score=108.29  Aligned_cols=97  Identities=10%  Similarity=0.281  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccch
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHI  201 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~  201 (384)
                      ..+.+++.+++.+.+.++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|++++... ++++++++|+.+++.
T Consensus        10 h~pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~   89 (301)
T 1m6y_A           10 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF   89 (301)
T ss_dssp             CCCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence            34567888999999889999999999999999999988  479999999999999999998654 589999999988652


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ..      .. .....||.|+.|+|+.
T Consensus        90 ~l------~~-~g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           90 LL------KT-LGIEKVDGILMDLGVS  109 (301)
T ss_dssp             HH------HH-TTCSCEEEEEEECSCC
T ss_pred             HH------Hh-cCCCCCCEEEEcCccc
Confidence            10      00 0114799999999964

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.08  E-value=1.1e-10  Score=109.53  Aligned_cols=100  Identities=22%  Similarity=0.364  Sum_probs=80.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhH
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      +.+.+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.|++.++++.   ++++++.+|+.+++++      
T Consensus        45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~------  115 (279)
T 3ccf_A           45 YGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY---PHLHFDVADARNFRVD------  115 (279)
T ss_dssp             SCCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTSCEEECCTTTCCCS------
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC---CCCEEEECChhhCCcC------
Confidence            4456777778788899999999999999999998889999999999999999876   5889999999987642      


Q ss_pred             HhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCCe
Q 016715          209 FERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDIF  244 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~~  244 (384)
                             +.||+|+++..++..       ..+.+.|+++|.++
T Consensus       116 -------~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~  151 (279)
T 3ccf_A          116 -------KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFV  151 (279)
T ss_dssp             -------SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             -------CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEE
Confidence                   579999998766432       23344556666543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.08  E-value=5.2e-10  Score=102.78  Aligned_cols=89  Identities=19%  Similarity=0.216  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      .....+++.+...++.+|||||||+|.++..+++.+ .+|+++|+++.+++.++++....++++++++|+.++++.+   
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~---  156 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPP---  156 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCS---
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCC---
Confidence            344667777776778999999999999999999884 5799999999999999999865568999999999876543   


Q ss_pred             hHHhhhccCCCcceEeeccCcc
Q 016715          207 SLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                               +.||+|+++..++
T Consensus       157 ---------~~fD~v~~~~~l~  169 (254)
T 1xtp_A          157 ---------NTYDLIVIQWTAI  169 (254)
T ss_dssp             ---------SCEEEEEEESCGG
T ss_pred             ---------CCeEEEEEcchhh
Confidence                     5799999876653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.08  E-value=8.9e-11  Score=101.44  Aligned_cols=94  Identities=16%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhh
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      .+++.+...++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++   .++++++.+|   .++.         
T Consensus         8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~v~~~~~d---~~~~---------   72 (170)
T 3i9f_A            8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---FDSVITLSDP---KEIP---------   72 (170)
T ss_dssp             TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---CTTSEEESSG---GGSC---------
T ss_pred             HHHHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---CCCcEEEeCC---CCCC---------
Confidence            455666777888999999999999999999877999999999999999988   3689999999   3332         


Q ss_pred             hccCCCcceEeeccCcccc-------HHHHHHhcccCCC
Q 016715          212 RKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI  243 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~  243 (384)
                         .+.||+|+++..++..       ..+.+.|+++|.+
T Consensus        73 ---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  108 (170)
T 3i9f_A           73 ---DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRV  108 (170)
T ss_dssp             ---TTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEE
T ss_pred             ---CCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEE
Confidence               2679999988766433       3334455555543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.08  E-value=6e-10  Score=111.20  Aligned_cols=114  Identities=11%  Similarity=0.146  Sum_probs=82.3

Q ss_pred             ccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHH-------HHHhcC--
Q 016715          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLV-------RERFAS--  185 (384)
Q Consensus       117 ~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a-------~~~~~~--  185 (384)
                      ..+|+   +.+.++..+++.+.+.++++|||||||+|.++..+++. ++ +|+|||+++.+++.|       ++++..  
T Consensus       221 ~~yGe---t~p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G  297 (433)
T 1u2z_A          221 YVYGE---LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG  297 (433)
T ss_dssp             GCCCC---BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccc---ccHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC
Confidence            34555   33899999999999999999999999999999999986 54 799999999999888       776642  


Q ss_pred             --CCCeEEEEccccccc--hhhhhhhHHhhhccCCCcceEeeccCcccc------HHHHHHhcccCCC
Q 016715          186 --IDQLKVLQEDFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDI  243 (384)
Q Consensus       186 --~~~v~~~~gD~~~~~--~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~------~~il~~L~~~g~~  243 (384)
                        .++++++++|....+  +..          ..+.||+|++|......      ..+...|+++|.+
T Consensus       298 l~~~nV~~i~gD~~~~~~~~~~----------~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~l  355 (433)
T 1u2z_A          298 MRLNNVEFSLKKSFVDNNRVAE----------LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKI  355 (433)
T ss_dssp             BCCCCEEEEESSCSTTCHHHHH----------HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEE
T ss_pred             CCCCceEEEEcCcccccccccc----------ccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEE
Confidence              258999998755322  111          01579999987433221      2334455555543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.07  E-value=3.4e-10  Score=105.44  Aligned_cols=100  Identities=25%  Similarity=0.282  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHH------HHHHHHHHhcCC---CCeEEEEcc
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQH------MVGLVRERFASI---DQLKVLQED  195 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~------~~~~a~~~~~~~---~~v~~~~gD  195 (384)
                      .....+++.+.+.++.+|||||||+|.++..+++. +  .+|+|+|+++.      +++.+++++...   ++++++.+|
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            44567888888888999999999999999999988 4  79999999997      999999987643   479999998


Q ss_pred             ---ccccchhhhhhhHHhhhccCCCcceEeeccCcccc------HHHHHHhcc
Q 016715          196 ---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLP  239 (384)
Q Consensus       196 ---~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~------~~il~~L~~  239 (384)
                         ...+++.            .+.||+|+++.+++..      ...+..+++
T Consensus       110 ~~~~~~~~~~------------~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~  150 (275)
T 3bkx_A          110 NLSDDLGPIA------------DQHFDRVVLAHSLWYFASANALALLFKNMAA  150 (275)
T ss_dssp             CTTTCCGGGT------------TCCCSEEEEESCGGGSSCHHHHHHHHHHHTT
T ss_pred             hhhhccCCCC------------CCCEEEEEEccchhhCCCHHHHHHHHHHHhC
Confidence               3333332            2679999998766332      233456665

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.07  E-value=2.2e-10  Score=113.01  Aligned_cols=91  Identities=13%  Similarity=0.252  Sum_probs=78.6

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC----------------------------------------C
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG----------------------------------------A  164 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~----------------------------------------~  164 (384)
                      ..+.+++.|+......++..|||+|||+|+++..++..+                                        .
T Consensus       179 l~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  258 (385)
T 3ldu_A          179 IRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF  258 (385)
T ss_dssp             CCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence            467888999999998889999999999999999988763                                        4


Q ss_pred             cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          165 TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       165 ~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      +|+|+|+|+.+++.|++++..+   +++++.++|+.+++.+             ..+|+||+|+||.
T Consensus       259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-------------~~~D~Iv~NPPyg  312 (385)
T 3ldu_A          259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-------------DEFGFIITNPPYG  312 (385)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-------------CBSCEEEECCCCC
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-------------CCCcEEEECCCCc
Confidence            6999999999999999987643   2799999999987642             4789999999995

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.07  E-value=4.3e-10  Score=102.51  Aligned_cols=85  Identities=19%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      ..+.+.+...++.+|||||||+|.++..+++.+. +|+++|+++.+++.++++... .+++++++|+.++++.+      
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~------  105 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLHLPQ------  105 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGGCCCCT------
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhhccCCC------
Confidence            3456666666788999999999999999999988 999999999999999988754 47999999999876532      


Q ss_pred             hhhccCCCcceEeeccCcc
Q 016715          210 ERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~NlPy~  228 (384)
                            +.||+|+++..++
T Consensus       106 ------~~fD~v~~~~~l~  118 (243)
T 3bkw_A          106 ------DSFDLAYSSLALH  118 (243)
T ss_dssp             ------TCEEEEEEESCGG
T ss_pred             ------CCceEEEEecccc
Confidence                  5799999886653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.07  E-value=8.6e-10  Score=108.27  Aligned_cols=118  Identities=13%  Similarity=0.181  Sum_probs=89.3

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC--C
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--D  187 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l--~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~--~  187 (384)
                      .+...|.|.+.+.+.....++...  ...++.+|||+| |+|.++..++..+  .+|+++|+|+.+++.+++++...  .
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~  221 (373)
T 2qm3_A          143 EPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE  221 (373)
T ss_dssp             CCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred             ccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            466678887888777777666432  233678999999 9999999999885  48999999999999999987643  3


Q ss_pred             CeEEEEccccc-cchhhhhhhHHhhhccCCCcceEeeccCcccc------HHHHHHhcccCCC
Q 016715          188 QLKVLQEDFVK-CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDI  243 (384)
Q Consensus       188 ~v~~~~gD~~~-~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~------~~il~~L~~~g~~  243 (384)
                      +++++++|+.+ ++..           ..+.||+|++|+||...      ......|.++|.+
T Consensus       222 ~v~~~~~D~~~~l~~~-----------~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~  273 (373)
T 2qm3_A          222 DIEIFTFDLRKPLPDY-----------ALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCA  273 (373)
T ss_dssp             CEEEECCCTTSCCCTT-----------TSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCE
T ss_pred             CEEEEEChhhhhchhh-----------ccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeE
Confidence            89999999988 5421           12579999999999653      3344455565643

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.06  E-value=6.5e-10  Score=101.27  Aligned_cols=88  Identities=20%  Similarity=0.251  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhcCC--CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhh
Q 016715          128 EINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       128 ~~~~~il~~l~~~--~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~  204 (384)
                      ...+.+.+.+...  ++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++....+ +++++++|+.++++.  
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--   99 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN--   99 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS--
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc--
Confidence            4455555555433  67899999999999999999999999999999999999999876443 799999999887642  


Q ss_pred             hhhHHhhhccCCCcceEeecc-Ccc
Q 016715          205 MLSLFERRKSSSGFAKVVANI-PFN  228 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~Nl-Py~  228 (384)
                                 +.||+|+++. .++
T Consensus       100 -----------~~fD~v~~~~~~l~  113 (246)
T 1y8c_A          100 -----------RKFDLITCCLDSTN  113 (246)
T ss_dssp             -----------CCEEEEEECTTGGG
T ss_pred             -----------CCceEEEEcCcccc
Confidence                       5799999976 553

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.06  E-value=2e-10  Score=108.31  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=75.8

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~  206 (384)
                      .++.+.+  .+|++|||+|||+|.++..++..|+ +|+|+|+|+.+++.+++++..+   ++++++++|+.++..     
T Consensus       117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-----  189 (278)
T 3k6r_A          117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-----  189 (278)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-----
T ss_pred             HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-----
Confidence            3455544  4789999999999999999999874 8999999999999999998754   479999999988753     


Q ss_pred             hHHhhhccCCCcceEeeccCcccc---HHHHHHhcccC
Q 016715          207 SLFERRKSSSGFAKVVANIPFNIS---TDVIKQLLPMG  241 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~---~~il~~L~~~g  241 (384)
                              .+.+|.|+.|+|+...   ...+..|+++|
T Consensus       190 --------~~~~D~Vi~~~p~~~~~~l~~a~~~lk~gG  219 (278)
T 3k6r_A          190 --------ENIADRILMGYVVRTHEFIPKALSIAKDGA  219 (278)
T ss_dssp             --------CSCEEEEEECCCSSGGGGHHHHHHHEEEEE
T ss_pred             --------ccCCCEEEECCCCcHHHHHHHHHHHcCCCC
Confidence                    2579999999987443   33445555544

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.05  E-value=2.7e-10  Score=110.93  Aligned_cols=76  Identities=17%  Similarity=0.293  Sum_probs=64.4

Q ss_pred             cCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      ...++.+|||||||+|.++..+++.++ +|+|+|++ .+++.|+++...+   ++++++++|+.++++++          
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----------  131 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPV----------  131 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS----------
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCC----------
Confidence            344788999999999999999999976 99999999 5999999887643   35999999999987643          


Q ss_pred             cCCCcceEeeccC
Q 016715          214 SSSGFAKVVANIP  226 (384)
Q Consensus       214 ~~~~~d~Vv~NlP  226 (384)
                        +.+|+|+++.+
T Consensus       132 --~~fD~Iis~~~  142 (349)
T 3q7e_A          132 --EKVDIIISEWM  142 (349)
T ss_dssp             --SCEEEEEECCC
T ss_pred             --CceEEEEEccc
Confidence              68999999864

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.05  E-value=5e-10  Score=102.08  Aligned_cols=86  Identities=19%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .+.+.+.+.+.  ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.. ..+++++++|+.++++++    
T Consensus        42 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~----  114 (242)
T 3l8d_A           42 TIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE-GPDLSFIKGDLSSLPFEN----  114 (242)
T ss_dssp             THHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC-BTTEEEEECBTTBCSSCT----
T ss_pred             HHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc-cCCceEEEcchhcCCCCC----
Confidence            34555555544  67899999999999999999999999999999999999998753 358999999999987543    


Q ss_pred             HHhhhccCCCcceEeeccCcc
Q 016715          208 LFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                              +.||+|+++..++
T Consensus       115 --------~~fD~v~~~~~l~  127 (242)
T 3l8d_A          115 --------EQFEAIMAINSLE  127 (242)
T ss_dssp             --------TCEEEEEEESCTT
T ss_pred             --------CCccEEEEcChHh
Confidence                    6899999876554

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.05  E-value=5.8e-10  Score=101.59  Aligned_cols=83  Identities=13%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhH
Q 016715          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       130 ~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      .+.+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++...  +++++++|+.+.. .      
T Consensus        30 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~--~v~~~~~d~~~~~-~------  100 (250)
T 2p7i_A           30 HPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQ-L------  100 (250)
T ss_dssp             HHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGCC-C------
T ss_pred             HHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC--CeEEEEccHHHcC-c------
Confidence            345555554 34677999999999999999999988999999999999999998754  8999999998873 2      


Q ss_pred             HhhhccCCCcceEeeccCc
Q 016715          209 FERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy  227 (384)
                            .+.||+|+++..+
T Consensus       101 ------~~~fD~v~~~~~l  113 (250)
T 2p7i_A          101 ------PRRYDNIVLTHVL  113 (250)
T ss_dssp             ------SSCEEEEEEESCG
T ss_pred             ------CCcccEEEEhhHH
Confidence                  2579999987544

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.05  E-value=7.2e-10  Score=101.14  Aligned_cols=99  Identities=16%  Similarity=0.132  Sum_probs=73.2

Q ss_pred             HhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc-hhhhhhhHHhh
Q 016715          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH-IRSHMLSLFER  211 (384)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~-~~~~~~~~~~~  211 (384)
                      .+.+.++++|||+|||+|.++..+++. +  .+|+|+|+++.+++.+.++....++++++++|+.+.. ++.        
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~--------  143 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRM--------  143 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGG--------
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcc--------
Confidence            345667899999999999999999987 2  6999999999988877776655578999999998743 111        


Q ss_pred             hccCCCcceEeeccCccc-----cHHHHHHhcccCCCe
Q 016715          212 RKSSSGFAKVVANIPFNI-----STDVIKQLLPMGDIF  244 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i-----~~~il~~L~~~g~~~  244 (384)
                        ..+.||+|++|+|...     ...+...|+++|.++
T Consensus       144 --~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~  179 (233)
T 2ipx_A          144 --LIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFV  179 (233)
T ss_dssp             --GCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             --cCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEE
Confidence              1257999999988321     123444566666543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.05  E-value=7.1e-10  Score=101.10  Aligned_cols=105  Identities=14%  Similarity=0.151  Sum_probs=82.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      .+.++.....+...+...++.+|||||||+|..+..+++.  +.+|+++|+++.+++.|++++...   ++++++.+|+.
T Consensus        36 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           36 PIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL  115 (233)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG
T ss_pred             CCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            4577888888888877778889999999999999999998  679999999999999999987643   37999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHH
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ  236 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~  236 (384)
                      +.....         ...+.||+|+++.+......++..
T Consensus       116 ~~~~~~---------~~~~~fD~I~~~~~~~~~~~~l~~  145 (233)
T 2gpy_A          116 QLGEKL---------ELYPLFDVLFIDAAKGQYRRFFDM  145 (233)
T ss_dssp             GSHHHH---------TTSCCEEEEEEEGGGSCHHHHHHH
T ss_pred             HHHHhc---------ccCCCccEEEECCCHHHHHHHHHH
Confidence            742110         002579999999887554555443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.05  E-value=2.1e-10  Score=105.44  Aligned_cols=87  Identities=20%  Similarity=0.184  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~  205 (384)
                      .+.+.+.+.+. .+|.+|||||||+|..+..+++. +.+|++||+++.+++.|+++....+ +++++.+|+.++....  
T Consensus        48 ~~m~~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--  124 (236)
T 3orh_A           48 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL--  124 (236)
T ss_dssp             HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS--
T ss_pred             HHHHHHHHhhc-cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc--
Confidence            34444554443 46889999999999999999887 4689999999999999999887543 7899999988764321  


Q ss_pred             hhHHhhhccCCCcceEeecc
Q 016715          206 LSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                              ....||.|+.+.
T Consensus       125 --------~~~~FD~i~~D~  136 (236)
T 3orh_A          125 --------PDGHFDGILYDT  136 (236)
T ss_dssp             --------CTTCEEEEEECC
T ss_pred             --------cccCCceEEEee
Confidence                    235788887653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.05  E-value=5.4e-10  Score=97.83  Aligned_cols=78  Identities=22%  Similarity=0.374  Sum_probs=65.7

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhh
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      .++..+ +.++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++.   ++++++++|+.+.++++        
T Consensus        38 ~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~---~~~~~~~~d~~~~~~~~--------  105 (195)
T 3cgg_A           38 RLIDAM-APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQISE--------  105 (195)
T ss_dssp             HHHHHH-SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTSEEEECCTTTSCCCC--------
T ss_pred             HHHHHh-ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC---CCCcEEEcccccCCCCC--------
Confidence            344444 357789999999999999999999999999999999999999886   46899999999876532        


Q ss_pred             hccCCCcceEeecc
Q 016715          212 RKSSSGFAKVVANI  225 (384)
Q Consensus       212 ~~~~~~~d~Vv~Nl  225 (384)
                          +.+|+|+++.
T Consensus       106 ----~~~D~i~~~~  115 (195)
T 3cgg_A          106 ----TDFDLIVSAG  115 (195)
T ss_dssp             ----CCEEEEEECC
T ss_pred             ----CceeEEEECC
Confidence                5799999974

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.04  E-value=7e-10  Score=99.27  Aligned_cols=83  Identities=18%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhH
Q 016715          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       130 ~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      ...+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++  ...++++++++|+.++ +.      
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~-~~------  104 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW-TP------  104 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC-CC------
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC-CC------
Confidence            445566654 5577899999999999999999999999999999999999988  2336899999999887 32      


Q ss_pred             HhhhccCCCcceEeeccCc
Q 016715          209 FERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy  227 (384)
                            .+.||+|+++..+
T Consensus       105 ------~~~~D~v~~~~~l  117 (218)
T 3ou2_A          105 ------DRQWDAVFFAHWL  117 (218)
T ss_dssp             ------SSCEEEEEEESCG
T ss_pred             ------CCceeEEEEechh
Confidence                  2689999987654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.04  E-value=2.9e-10  Score=111.77  Aligned_cols=101  Identities=21%  Similarity=0.304  Sum_probs=76.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (384)
                      .+.|.+.....++.+|||||||+|.++..+++.|+ +|+|+|++ .+++.|++++..+   ++++++++|+.+++++   
T Consensus        52 ~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---  127 (376)
T 3r0q_C           52 FNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---  127 (376)
T ss_dssp             HHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---
T ss_pred             HHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---
Confidence            34444444566789999999999999999999987 99999999 9999999887643   3699999999988653   


Q ss_pred             hhHHhhhccCCCcceEeecc-Cccc-----cHHH----HHHhcccCCCe
Q 016715          206 LSLFERRKSSSGFAKVVANI-PFNI-----STDV----IKQLLPMGDIF  244 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~Nl-Py~i-----~~~i----l~~L~~~g~~~  244 (384)
                                +.+|+|+++. +|.+     ...+    ...|+++|.++
T Consensus       128 ----------~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li  166 (376)
T 3r0q_C          128 ----------EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMY  166 (376)
T ss_dssp             ----------SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEE
Confidence                      5799999986 3433     1223    24566666553

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.03  E-value=3.6e-10  Score=108.51  Aligned_cols=91  Identities=14%  Similarity=0.234  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKC  199 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~  199 (384)
                      .+......++..+.+.++++|||+|||+|..|..+++.   +.+|+|+|+++.+++.+++++..  .++++++++|+.++
T Consensus       102 ~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~  181 (315)
T 1ixk_A          102 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI  181 (315)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG
T ss_pred             EeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhc
Confidence            33444455566778889999999999999999999986   35899999999999999998763  34899999999887


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +..            .+.||.|++|+|+
T Consensus       182 ~~~------------~~~fD~Il~d~Pc  197 (315)
T 1ixk_A          182 GEL------------NVEFDKILLDAPC  197 (315)
T ss_dssp             GGG------------CCCEEEEEEECCT
T ss_pred             ccc------------cccCCEEEEeCCC
Confidence            532            1579999999885

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.03  E-value=1.1e-09  Score=99.06  Aligned_cols=103  Identities=13%  Similarity=0.123  Sum_probs=75.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~  196 (384)
                      ....+.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...   ++++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            4466666666666655567789999999999999999984   679999999999999999987632   3699999998


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCccccH
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                      .+.....      ......+.||.|+.+.+.....
T Consensus       120 ~~~l~~~------~~~~~~~~fD~V~~d~~~~~~~  148 (221)
T 3u81_A          120 QDLIPQL------KKKYDVDTLDMVFLDHWKDRYL  148 (221)
T ss_dssp             HHHGGGT------TTTSCCCCCSEEEECSCGGGHH
T ss_pred             HHHHHHH------HHhcCCCceEEEEEcCCcccch
Confidence            7642110      0000115799999987654444

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.03  E-value=8.1e-10  Score=102.74  Aligned_cols=90  Identities=14%  Similarity=0.255  Sum_probs=76.7

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++.+|||||||+|.++..+++.  +.+|+++|+++.+++.++++.   +++.++.+|+.++++.+            +.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~~------------~~  148 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLPFSD------------TS  148 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCSBCT------------TC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcchhhCCCCC------------Cc
Confidence            46789999999999999999997  679999999999999999875   47899999998877543            57


Q ss_pred             cceEeeccCccccHHHHHHhcccCCCe
Q 016715          218 FAKVVANIPFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       218 ~d~Vv~NlPy~i~~~il~~L~~~g~~~  244 (384)
                      ||+|+++........+...|+++|.++
T Consensus       149 fD~v~~~~~~~~l~~~~~~L~pgG~l~  175 (269)
T 1p91_A          149 MDAIIRIYAPCKAEELARVVKPGGWVI  175 (269)
T ss_dssp             EEEEEEESCCCCHHHHHHHEEEEEEEE
T ss_pred             eeEEEEeCChhhHHHHHHhcCCCcEEE
Confidence            999999877777778888888877653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.03  E-value=4e-10  Score=111.41  Aligned_cols=93  Identities=20%  Similarity=0.313  Sum_probs=70.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccch
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI  201 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~  201 (384)
                      +..+.+....++..+. .++++|||+|||+|.++..++..|+.|+++|+|+.+++.+++++..++ ..++.++|+.+...
T Consensus       197 ~f~dqr~~r~~l~~~~-~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~  275 (393)
T 4dmg_A          197 YYLDQRENRRLFEAMV-RPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLR  275 (393)
T ss_dssp             SCGGGHHHHHHHHTTC-CTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHH
T ss_pred             cCCCHHHHHHHHHHHh-cCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHH
Confidence            3444444555555332 358899999999999999999998889999999999999999886432 34577889877532


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCc
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      .           ..+.||+|++|+|+
T Consensus       276 ~-----------~~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          276 G-----------LEGPFHHVLLDPPT  290 (393)
T ss_dssp             T-----------CCCCEEEEEECCCC
T ss_pred             H-----------hcCCCCEEEECCCc
Confidence            1           11349999999998

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=6.2e-10  Score=102.96  Aligned_cols=110  Identities=15%  Similarity=0.172  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      .++.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...   ++++++.+|+.+
T Consensus        47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  126 (248)
T 3tfw_A           47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ  126 (248)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34444444433335557789999999999999999987   679999999999999999988632   379999999987


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccccHHH----HHHhcccCCC
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV----IKQLLPMGDI  243 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~i----l~~L~~~g~~  243 (384)
                      .....         ...+.||+|+.+.+.......    ...|.++|.+
T Consensus       127 ~l~~~---------~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  166 (248)
T 3tfw_A          127 SLESL---------GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLI  166 (248)
T ss_dssp             HHHTC---------CSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEE
T ss_pred             HHHhc---------CCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEE
Confidence            42210         012479999988765443333    3445555543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=5.5e-10  Score=102.36  Aligned_cols=97  Identities=12%  Similarity=0.104  Sum_probs=73.7

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      +.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++.. ..+++++++|+.+.+....+.       ....+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~~-------~~~~~  125 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT-AANISYRLLDGLVPEQAAQIH-------SEIGD  125 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC-CTTEEEEECCTTCHHHHHHHH-------HHHCS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc-ccCceEEECcccccccccccc-------cccCc
Confidence            3567899999999999999999998899999999999999999873 358999999999876543221       11348


Q ss_pred             ceEeeccCccccH---------HHHHHhcccCCC
Q 016715          219 AKVVANIPFNIST---------DVIKQLLPMGDI  243 (384)
Q Consensus       219 d~Vv~NlPy~i~~---------~il~~L~~~g~~  243 (384)
                      |+|+++..++..+         .+...|+++|.+
T Consensus       126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  159 (245)
T 3ggd_A          126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAM  159 (245)
T ss_dssp             CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEE
T ss_pred             cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEE
Confidence            9998875543322         334456666654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.02  E-value=3.4e-10  Score=101.71  Aligned_cols=87  Identities=17%  Similarity=0.276  Sum_probs=68.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      ...+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++    +++.++.+|+.++.....     
T Consensus        41 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~-----  111 (227)
T 3e8s_A           41 DQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKV-----  111 (227)
T ss_dssp             HHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT----CSSCEEECCHHHHHTTCS-----
T ss_pred             cHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh----cccccchhhHHhhccccc-----
Confidence            34566666666778999999999999999999999999999999999999987    477889999887621110     


Q ss_pred             hhhccCCCcceEeeccCcc
Q 016715          210 ERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~NlPy~  228 (384)
                         .....||+|+++..++
T Consensus       112 ---~~~~~fD~v~~~~~l~  127 (227)
T 3e8s_A          112 ---PVGKDYDLICANFALL  127 (227)
T ss_dssp             ---CCCCCEEEEEEESCCC
T ss_pred             ---ccCCCccEEEECchhh
Confidence               0124599999987765

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.02  E-value=9.3e-10  Score=100.22  Aligned_cols=94  Identities=15%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccccchh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~~~~~  202 (384)
                      +..++...+..++.+|||||||+|+.+..+++.   +.+|+++|+++.+++.|++++...    ++++++++|+.+....
T Consensus        45 l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~  124 (221)
T 3dr5_A           45 LTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSR  124 (221)
T ss_dssp             HHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGG
T ss_pred             HHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHH
Confidence            344444444444559999999999999999985   579999999999999999988642    3799999999875321


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCccccHHH
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~i  233 (384)
                      .          ..+.||.|+.+.+..-...+
T Consensus       125 ~----------~~~~fD~V~~d~~~~~~~~~  145 (221)
T 3dr5_A          125 L----------ANDSYQLVFGQVSPMDLKAL  145 (221)
T ss_dssp             S----------CTTCEEEEEECCCTTTHHHH
T ss_pred             h----------cCCCcCeEEEcCcHHHHHHH
Confidence            0          12679999998765433333

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.1e-09  Score=103.59  Aligned_cols=111  Identities=11%  Similarity=0.068  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHH---cCCcEEEEeCCHHHHHHHHHHhcC----CCCeEEEEccccc
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFAS----IDQLKVLQEDFVK  198 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~---~~~~V~avE~d~~~~~~a~~~~~~----~~~v~~~~gD~~~  198 (384)
                      .+.+.+.+.+... .++.+|||||||+|.++..+++   .+.+|+|+|+++.+++.+++++..    .++++++++|+.+
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD  100 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence            3455566655543 4688999999999999999995   467999999999999999998754    3589999999998


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCcccc------HHHHHHhcccCCC
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDI  243 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~------~~il~~L~~~g~~  243 (384)
                      +++.+.. .     ...+.||+|+++..++..      ..+...|.++|.+
T Consensus       101 ~~~~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l  145 (299)
T 3g5t_A          101 FKFLGAD-S-----VDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTI  145 (299)
T ss_dssp             CGGGCTT-T-----TTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEE
T ss_pred             CCccccc-c-----ccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEE
Confidence            8754200 0     012579999998765433      2333455566654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.02  E-value=4.3e-10  Score=110.96  Aligned_cols=97  Identities=12%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC--C--CeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--D--QLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~--~--~v~~~~gD~~  197 (384)
                      |..+++..+.++...- .++++|||+|||+|.++..++..++ +|+++|+++.+++.|++++..+  .  +++++++|+.
T Consensus       195 ff~~~~~~~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~  273 (385)
T 2b78_A          195 IFLDQRQVRNELINGS-AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF  273 (385)
T ss_dssp             SCGGGHHHHHHHHHTT-TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred             cCCcHHHHHHHHHHHh-cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            4466666666665442 4678999999999999999999776 8999999999999999998643  2  8999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      +....     +.   .....||+|+.|+|+.
T Consensus       274 ~~l~~-----~~---~~~~~fD~Ii~DPP~~  296 (385)
T 2b78_A          274 DYFKY-----AR---RHHLTYDIIIIDPPSF  296 (385)
T ss_dssp             HHHHH-----HH---HTTCCEEEEEECCCCC
T ss_pred             HHHHH-----HH---HhCCCccEEEECCCCC
Confidence            74211     00   0124799999999994

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.01  E-value=2.6e-10  Score=104.91  Aligned_cols=103  Identities=10%  Similarity=0.084  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc-
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC-  199 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~-  199 (384)
                      +.....+.+.+...++++|||||||+|+.+..|++.      +.+|+|||+++.+++.|+. .  .++++++++|+.+. 
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~--~~~v~~~~gD~~~~~  143 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D--MENITLHQGDCSDLT  143 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G--CTTEEEEECCSSCSG
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c--CCceEEEECcchhHH
Confidence            777777766666556789999999999999999986      6799999999999988872 2  36899999999885 


Q ss_pred             --chhhhhhhHHhhhccCCCcceEeeccCccccHHHHH-----HhcccCCC
Q 016715          200 --HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK-----QLLPMGDI  243 (384)
Q Consensus       200 --~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~-----~L~~~g~~  243 (384)
                        +..           ....||.|+.+....-...++.     .|+++|.+
T Consensus       144 ~l~~~-----------~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~l  183 (236)
T 2bm8_A          144 TFEHL-----------REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYF  183 (236)
T ss_dssp             GGGGG-----------SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEE
T ss_pred             HHHhh-----------ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEE
Confidence              221           1136899987654222222322     56666644

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.01  E-value=4e-10  Score=101.50  Aligned_cols=71  Identities=18%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHh----c--CCCCeEEEEccccccchh
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERF----A--SIDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~----~--~~~~v~~~~gD~~~~~~~  202 (384)
                      ..++.+.+.++.+|||||||+|.++..+++.  +.+|+|+|+++.|++.+.+..    .  ..++++++++|+.++++.
T Consensus        18 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~   96 (218)
T 3mq2_A           18 AEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL   96 (218)
T ss_dssp             HHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC
T ss_pred             HHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC
Confidence            4556666778899999999999999999998  679999999999888643322    1  234899999999998764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.00  E-value=3.4e-10  Score=109.86  Aligned_cols=87  Identities=17%  Similarity=0.234  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~  205 (384)
                      ..+.+++.+...++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.+++++..++ +++++.+|+.+..     
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-----  258 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV-----  258 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC-----
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc-----
Confidence            46778888866667899999999999999999985  589999999999999999886433 5788899987643     


Q ss_pred             hhHHhhhccCCCcceEeeccCccc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                               .+.||.|++|+||+.
T Consensus       259 ---------~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          259 ---------KGRFDMIISNPPFHD  273 (343)
T ss_dssp             ---------CSCEEEEEECCCCCS
T ss_pred             ---------cCCeeEEEECCCccc
Confidence                     157999999999974

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.00  E-value=1.4e-09  Score=105.69  Aligned_cols=87  Identities=18%  Similarity=0.236  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      ..+.+.|++.+...++.+|||||||+|.++..+++.+. +|+|+|+++ +++.+++++..+   ++++++++|+.+++++
T Consensus        36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  114 (348)
T 2y1w_A           36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP  114 (348)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred             HHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC
Confidence            34556777777777889999999999999999999865 999999996 889888887533   4899999999987643


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                   +.+|+|+++.++
T Consensus       115 -------------~~~D~Ivs~~~~  126 (348)
T 2y1w_A          115 -------------EQVDIIISEPMG  126 (348)
T ss_dssp             -------------SCEEEEEECCCB
T ss_pred             -------------CceeEEEEeCch
Confidence                         479999999764

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.00  E-value=1.3e-09  Score=110.62  Aligned_cols=84  Identities=19%  Similarity=0.246  Sum_probs=69.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (384)
                      .+.+++.+...++.+|||||||+|.++..+++.+. +|+|+|+++ +++.|++++..+   ++++++++|+.+++++   
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~---  222 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---  222 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC---
Confidence            44566666666788999999999999999998865 999999998 999999887643   5899999999987543   


Q ss_pred             hhHHhhhccCCCcceEeeccCc
Q 016715          206 LSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                +.||+|++|.+.
T Consensus       223 ----------~~fD~Ivs~~~~  234 (480)
T 3b3j_A          223 ----------EQVDIIISEPMG  234 (480)
T ss_dssp             ----------SCEEEEECCCCH
T ss_pred             ----------CCeEEEEEeCch
Confidence                      479999999883

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.00  E-value=4.6e-10  Score=105.69  Aligned_cols=86  Identities=17%  Similarity=0.266  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccc
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCH  200 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~  200 (384)
                      ..+.+.+.+.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++...      ..++.+..+|+.+++
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            45667777777766788999999999999999999999999999999999999887521      137889999998876


Q ss_pred             ---hhhhhhhHHhhhccCCCcceEeec
Q 016715          201 ---IRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       201 ---~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                         +.            .+.||+|+++
T Consensus       123 ~~~~~------------~~~fD~V~~~  137 (293)
T 3thr_A          123 KDVPA------------GDGFDAVICL  137 (293)
T ss_dssp             HHSCC------------TTCEEEEEEC
T ss_pred             ccccc------------CCCeEEEEEc
Confidence               32            2689999985

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.00  E-value=2.7e-10  Score=107.11  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=72.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--C-CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~-~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~  204 (384)
                      ...+...+.+.++++|||+|||+|..|..+++.  + .+|+|+|+++.+++.+++++...  .+++++++|+.+++... 
T Consensus        72 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~-  150 (274)
T 3ajd_A           72 SMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYL-  150 (274)
T ss_dssp             GGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhh-
Confidence            334556677888999999999999999999984  4 68999999999999999987643  48999999998765310 


Q ss_pred             hhhHHhhhccCCCcceEeeccCcc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                          .   ...+.||.|++|+|+.
T Consensus       151 ----~---~~~~~fD~Vl~d~Pcs  167 (274)
T 3ajd_A          151 ----L---KNEIFFDKILLDAPCS  167 (274)
T ss_dssp             ----H---HTTCCEEEEEEEECCC
T ss_pred             ----h---hccccCCEEEEcCCCC
Confidence                0   0125799999999984

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.00  E-value=8e-10  Score=103.08  Aligned_cols=83  Identities=23%  Similarity=0.314  Sum_probs=69.1

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhH
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      +.......++.+|||||||+|.++..+++.  +.+|+++|+++.+++.+++++...  ++++++.+|+.++++.+     
T Consensus        29 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-----  103 (276)
T 3mgg_A           29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFED-----  103 (276)
T ss_dssp             HHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCT-----
T ss_pred             HhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCC-----
Confidence            333334567889999999999999999998  679999999999999999987543  48999999999887543     


Q ss_pred             HhhhccCCCcceEeeccCc
Q 016715          209 FERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy  227 (384)
                             +.||+|+++..+
T Consensus       104 -------~~fD~v~~~~~l  115 (276)
T 3mgg_A          104 -------SSFDHIFVCFVL  115 (276)
T ss_dssp             -------TCEEEEEEESCG
T ss_pred             -------CCeeEEEEechh
Confidence                   689999988655

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.00  E-value=6.2e-10  Score=102.35  Aligned_cols=76  Identities=20%  Similarity=0.252  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc--------CCCCeEEEEccccc-cc--hhhhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--------SIDQLKVLQEDFVK-CH--IRSHML  206 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~--------~~~~v~~~~gD~~~-~~--~~~~~~  206 (384)
                      .++.+|||||||+|.++..|++.  +.+|+|||+++.|++.|++++.        ..+|++++++|+.+ ++  ++    
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~----  120 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY----  120 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC----
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC----
Confidence            35679999999999999999987  4689999999999999987653        23589999999987 43  21    


Q ss_pred             hHHhhhccCCCcceEeeccCc
Q 016715          207 SLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                              .+.+|.|+.+.|-
T Consensus       121 --------~~~~D~v~~~~~d  133 (235)
T 3ckk_A          121 --------KGQLTKMFFLFPD  133 (235)
T ss_dssp             --------TTCEEEEEEESCC
T ss_pred             --------CcCeeEEEEeCCC
Confidence                    2578999888653

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.00  E-value=1.8e-09  Score=100.08  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.   ++++++++|+.++++.             +.||+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~-------------~~fD~  113 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN---PDAVLHHGDMRDFSLG-------------RRFSA  113 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTTCCCS-------------CCEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC---CCCEEEECChHHCCcc-------------CCcCE
Confidence            5689999999999999999999999999999999999999886   3899999999987652             58999


Q ss_pred             Eeecc-Ccc
Q 016715          221 VVANI-PFN  228 (384)
Q Consensus       221 Vv~Nl-Py~  228 (384)
                      |+++. .++
T Consensus       114 v~~~~~~l~  122 (263)
T 3pfg_A          114 VTCMFSSIG  122 (263)
T ss_dssp             EEECTTGGG
T ss_pred             EEEcCchhh
Confidence            99876 553

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.00  E-value=9.7e-10  Score=100.55  Aligned_cols=100  Identities=13%  Similarity=0.234  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc--chhhh
Q 016715          128 EINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC--HIRSH  204 (384)
Q Consensus       128 ~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~--~~~~~  204 (384)
                      .+.+.+...+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++      ++++.+|+.+.  ++.  
T Consensus        27 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~d~~~~~~~~~--   98 (240)
T 3dli_A           27 LVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIEYLKSLP--   98 (240)
T ss_dssp             HHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT------SEEECSCHHHHHHTSC--
T ss_pred             HHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh------cceeeccHHHHhhhcC--
Confidence            34444444443 34678999999999999999999999999999999999998865      78899998875  332  


Q ss_pred             hhhHHhhhccCCCcceEeeccCc-ccc--------HHHHHHhcccCCCee
Q 016715          205 MLSLFERRKSSSGFAKVVANIPF-NIS--------TDVIKQLLPMGDIFS  245 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy-~i~--------~~il~~L~~~g~~~~  245 (384)
                                .+.||+|+++..+ ++.        ..+...|+++|.++.
T Consensus        99 ----------~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~  138 (240)
T 3dli_A           99 ----------DKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVI  138 (240)
T ss_dssp             ----------TTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEE
T ss_pred             ----------CCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEE
Confidence                      2689999987544 222        233446666666543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.99  E-value=1.2e-09  Score=96.86  Aligned_cols=83  Identities=14%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhH
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      +..++..+.  ++ +|||||||+|.++..+++.+.+|+++|+++.+++.++++.... .+++++++|+.+.++.+     
T Consensus        21 l~~~~~~~~--~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-----   92 (202)
T 2kw5_A           21 LVSVANQIP--QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVA-----   92 (202)
T ss_dssp             HHHHHHHSC--SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCT-----
T ss_pred             HHHHHHhCC--CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCc-----
Confidence            444454443  55 9999999999999999999999999999999999999887532 38999999999876543     


Q ss_pred             HhhhccCCCcceEeeccCc
Q 016715          209 FERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy  227 (384)
                             +.||+|+++..+
T Consensus        93 -------~~fD~v~~~~~~  104 (202)
T 2kw5_A           93 -------DAWEGIVSIFCH  104 (202)
T ss_dssp             -------TTCSEEEEECCC
T ss_pred             -------CCccEEEEEhhc
Confidence                   579999987543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.98  E-value=5.4e-10  Score=109.65  Aligned_cols=72  Identities=28%  Similarity=0.387  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      ..+|++|||||||+|.++..+++.|+ +|+|||.++ +++.|++.+..+   ++|+++++|+.+++++            
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp------------  147 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP------------  147 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS------------
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC------------
Confidence            34688999999999999999999987 799999995 888888877643   4799999999998764            


Q ss_pred             CCCcceEeec
Q 016715          215 SSGFAKVVAN  224 (384)
Q Consensus       215 ~~~~d~Vv~N  224 (384)
                       ..+|+||++
T Consensus       148 -e~~DvivsE  156 (376)
T 4hc4_A          148 -EQVDAIVSE  156 (376)
T ss_dssp             -SCEEEEECC
T ss_pred             -ccccEEEee
Confidence             479999985

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.98  E-value=1.4e-09  Score=98.40  Aligned_cols=114  Identities=16%  Similarity=0.124  Sum_probs=78.7

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      ..++.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...   ++++++++|+.
T Consensus        47 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  126 (225)
T 3tr6_A           47 QTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAK  126 (225)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHH
Confidence            345555554444444456789999999999999999987   679999999999999999988643   36999999997


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCccccHHH----HHHhcccCCC
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV----IKQLLPMGDI  243 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~i----l~~L~~~g~~  243 (384)
                      +.....     ... ...+.||+|+.+.+......+    ...|.++|.+
T Consensus       127 ~~~~~~-----~~~-~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~l  170 (225)
T 3tr6_A          127 DTLAEL-----IHA-GQAWQYDLIYIDADKANTDLYYEESLKLLREGGLI  170 (225)
T ss_dssp             HHHHHH-----HTT-TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHh-----hhc-cCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEE
Confidence            642110     000 001579999988875433333    3344455433

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.98  E-value=7.5e-10  Score=100.88  Aligned_cols=85  Identities=14%  Similarity=0.198  Sum_probs=68.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (384)
                      .+..++......+ .+|||||||+|.++..+++.+.+|+|+|+++.+++.++++....   .+++++++|+.+.+..   
T Consensus        55 ~l~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---  130 (235)
T 3lcc_A           55 LIVHLVDTSSLPL-GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---  130 (235)
T ss_dssp             HHHHHHHTTCSCC-EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---
T ss_pred             HHHHHHHhcCCCC-CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---
Confidence            3344455444444 59999999999999999988889999999999999999998643   3799999999987632   


Q ss_pred             hhHHhhhccCCCcceEeeccCc
Q 016715          206 LSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                ..||+|+++..+
T Consensus       131 ----------~~fD~v~~~~~l  142 (235)
T 3lcc_A          131 ----------ELFDLIFDYVFF  142 (235)
T ss_dssp             ----------SCEEEEEEESST
T ss_pred             ----------CCeeEEEEChhh
Confidence                      479999987655

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.98  E-value=1.6e-09  Score=108.11  Aligned_cols=99  Identities=18%  Similarity=0.283  Sum_probs=75.9

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchh
Q 016715          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIR  202 (384)
Q Consensus       125 ~~~~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~  202 (384)
                      .++...+.+++.+. ..++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..++ +++++.+|+.++.. 
T Consensus       273 ~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-  351 (425)
T 2jjq_A          273 TNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-  351 (425)
T ss_dssp             SBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-
T ss_pred             cCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-
Confidence            45555555544432 4567899999999999999999998899999999999999999876322 28999999988631 


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCcccc-HHHHHHh
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQL  237 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~-~~il~~L  237 (384)
                                   ..||+|+.|+|+.-. ..++..+
T Consensus       352 -------------~~fD~Vv~dPPr~g~~~~~~~~l  374 (425)
T 2jjq_A          352 -------------KGFDTVIVDPPRAGLHPRLVKRL  374 (425)
T ss_dssp             -------------TTCSEEEECCCTTCSCHHHHHHH
T ss_pred             -------------cCCCEEEEcCCccchHHHHHHHH
Confidence                         268999999998433 3344433

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.98  E-value=1.7e-09  Score=111.09  Aligned_cols=106  Identities=15%  Similarity=0.193  Sum_probs=84.3

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhc----CCCCCEEEEEcCcchHHHHHHHHc-----CCcEEEEeCCHHHHHHHHHHhc
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~----~~~~~~VLEIG~G~G~lt~~La~~-----~~~V~avE~d~~~~~~a~~~~~  184 (384)
                      ..++..|| |.+++.+++.|++.+.    +.++.+|+|.+||+|.+...+++.     ...++|+|+++.++..|+.++.
T Consensus       191 ~~~k~~G~-fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~  269 (542)
T 3lkd_A          191 DSGKKAGE-FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI  269 (542)
T ss_dssp             C---CCSS-CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HhcccCCe-ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH
Confidence            35567888 8899999999999997    557889999999999999888776     4589999999999999998764


Q ss_pred             C--C--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          185 S--I--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       185 ~--~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      .  .  +++.+.++|.+..+++.         .....||+||+||||..
T Consensus       270 l~gi~~~~~~I~~gDtL~~d~p~---------~~~~~fD~IvaNPPf~~  309 (542)
T 3lkd_A          270 LHGVPIENQFLHNADTLDEDWPT---------QEPTNFDGVLMNPPYSA  309 (542)
T ss_dssp             HTTCCGGGEEEEESCTTTSCSCC---------SSCCCBSEEEECCCTTC
T ss_pred             HcCCCcCccceEecceecccccc---------cccccccEEEecCCcCC
Confidence            2  2  36789999998874321         02367999999999953

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.98  E-value=1.1e-09  Score=108.24  Aligned_cols=96  Identities=18%  Similarity=0.195  Sum_probs=72.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---C-CeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---D-QLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~-~v~~~~gD~~  197 (384)
                      |..+......++..+  .++++|||+|||+|.++..++..|+ +|+|+|+++.+++.|++++..+   + +++++++|+.
T Consensus       204 ff~~~~~~~~~l~~~--~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~  281 (396)
T 3c0k_A          204 YYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_dssp             SCGGGHHHHHHHHHH--CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHH
T ss_pred             cCcCHHHHHHHHHHh--hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            333333344445444  4678999999999999999999864 8999999999999999987632   3 7999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      +.....     .   .....||+|++|+|+.
T Consensus       282 ~~~~~~-----~---~~~~~fD~Ii~dpP~~  304 (396)
T 3c0k_A          282 KLLRTY-----R---DRGEKFDVIVMDPPKF  304 (396)
T ss_dssp             HHHHHH-----H---HTTCCEEEEEECCSST
T ss_pred             HHHHHH-----H---hcCCCCCEEEECCCCC
Confidence            763210     0   0125799999999984

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.98  E-value=6.7e-10  Score=109.84  Aligned_cols=98  Identities=22%  Similarity=0.235  Sum_probs=75.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~  198 (384)
                      |..+......++..+. .++++|||+|||+|.++..++..|+ +|+|+|+++.+++.|++++..++   +++++++|+.+
T Consensus       200 ~f~~~~~~~~~~~~~~-~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~  278 (396)
T 2as0_A          200 FFLDQRENRLALEKWV-QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE  278 (396)
T ss_dssp             CCSTTHHHHHHHGGGC-CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             ccCCHHHHHHHHHHHh-hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHH
Confidence            4445555555555442 4678999999999999999999865 89999999999999999986543   79999999987


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      .....     .   .....||+|+.|+|+..
T Consensus       279 ~~~~~-----~---~~~~~fD~Vi~dpP~~~  301 (396)
T 2as0_A          279 EMEKL-----Q---KKGEKFDIVVLDPPAFV  301 (396)
T ss_dssp             HHHHH-----H---HTTCCEEEEEECCCCSC
T ss_pred             HHHHH-----H---hhCCCCCEEEECCCCCC
Confidence            53210     0   01357999999999843

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.98  E-value=1.4e-09  Score=98.23  Aligned_cols=110  Identities=16%  Similarity=0.166  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      .++.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...   ++++++++|+.+
T Consensus        42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34555544444445557789999999999999999997   679999999999999999987632   369999999976


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccccHHHH----HHhcccC
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI----KQLLPMG  241 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il----~~L~~~g  241 (384)
                      ....     +..  ...+.||.|+.+.+......++    ..|.++|
T Consensus       122 ~~~~-----~~~--~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG  161 (223)
T 3duw_A          122 SLQQ-----IEN--EKYEPFDFIFIDADKQNNPAYFEWALKLSRPGT  161 (223)
T ss_dssp             HHHH-----HHH--TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTC
T ss_pred             HHHH-----HHh--cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCc
Confidence            4211     000  0114699999987754434433    3444555

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.97  E-value=1.2e-09  Score=97.78  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      ..+..++..+  .++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.    ++.++.+|+.+++ .+    
T Consensus        32 ~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~-~~----  100 (211)
T 3e23_A           32 ATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL----GRPVRTMLFHQLD-AI----  100 (211)
T ss_dssp             HHHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC-CC----
T ss_pred             HHHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----CCceEEeeeccCC-CC----
Confidence            3444454443  36789999999999999999999999999999999999999987    5778899998877 22    


Q ss_pred             HHhhhccCCCcceEeeccCc
Q 016715          208 LFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy  227 (384)
                              +.||+|+++..+
T Consensus       101 --------~~fD~v~~~~~l  112 (211)
T 3e23_A          101 --------DAYDAVWAHACL  112 (211)
T ss_dssp             --------SCEEEEEECSCG
T ss_pred             --------CcEEEEEecCch
Confidence                    689999998655

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.97  E-value=2e-09  Score=99.62  Aligned_cols=115  Identities=12%  Similarity=0.087  Sum_probs=78.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      ...+.....+...+...++.+|||||||+|+.+..+++.   +.+|+++|+++.+++.+++++...   ++++++++|+.
T Consensus        62 ~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~  141 (247)
T 1sui_A           62 TTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL  141 (247)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH
Confidence            345555544444444456789999999999999999987   679999999999999999987643   37999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCccccH----HHHHHhcccCCC
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST----DVIKQLLPMGDI  243 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~----~il~~L~~~g~~  243 (384)
                      +....     +.......+.||.|+.+.+.....    .+...|.++|.+
T Consensus       142 ~~l~~-----l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  186 (247)
T 1sui_A          142 PVLDE-----MIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVI  186 (247)
T ss_dssp             HHHHH-----HHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCE
T ss_pred             HHHHH-----HHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEE
Confidence            74211     000000025799999886543222    334455555543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.97  E-value=1.3e-09  Score=105.14  Aligned_cols=102  Identities=20%  Similarity=0.338  Sum_probs=76.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (384)
                      .+.|.+.+...++.+|||||||+|.++..+++.++ +|+|+|++ .+++.|++++..+   ++++++++|+.++++++  
T Consensus        27 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--  103 (328)
T 1g6q_1           27 RNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--  103 (328)
T ss_dssp             HHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS--
T ss_pred             HHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCC--
Confidence            34454455555788999999999999999999876 89999999 6999999887643   47999999999886542  


Q ss_pred             hhHHhhhccCCCcceEeeccCccc------cHHHH----HHhcccCCCe
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNI------STDVI----KQLLPMGDIF  244 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i------~~~il----~~L~~~g~~~  244 (384)
                                +.+|+|+++.+.+.      ...++    ..|+++|.++
T Consensus       104 ----------~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          104 ----------PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ----------SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence                      57999999876322      22333    4566666654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.97  E-value=1.1e-09  Score=107.77  Aligned_cols=94  Identities=19%  Similarity=0.298  Sum_probs=74.4

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC----------CCCeEEEEcccccc------
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVKC------  199 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~----------~~~v~~~~gD~~~~------  199 (384)
                      ..++.+|||||||+|.++..+++.   +.+|+|+|+++.+++.+++++..          .++++++++|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            447889999999999999999986   45999999999999999988642          15899999999987      


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCCe
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDIF  244 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~~  244 (384)
                      ++++            +.||+|++|..++..       ..+.+.|+++|.++
T Consensus       161 ~~~~------------~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  200 (383)
T 4fsd_A          161 GVPD------------SSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELY  200 (383)
T ss_dssp             CCCT------------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCC------------CCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEE
Confidence            4432            689999999877543       34455666766554

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.96  E-value=2.4e-09  Score=97.98  Aligned_cols=84  Identities=13%  Similarity=0.182  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .++++|||||||+|+++..+++.+.  +|+|+|+++.+++.|++++..+   ++++++++|+++...++           
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~-----------   88 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA-----------   88 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-----------
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc-----------
Confidence            3678999999999999999999863  7999999999999999998754   36999999998865432           


Q ss_pred             CCCcceE-eeccCccccHHHHH
Q 016715          215 SSGFAKV-VANIPFNISTDVIK  235 (384)
Q Consensus       215 ~~~~d~V-v~NlPy~i~~~il~  235 (384)
                       ..+|.| ++|.--....+++.
T Consensus        89 -~~~D~IviaGmGg~lI~~IL~  109 (230)
T 3lec_A           89 -DNIDTITICGMGGRLIADILN  109 (230)
T ss_dssp             -GCCCEEEEEEECHHHHHHHHH
T ss_pred             -cccCEEEEeCCchHHHHHHHH
Confidence             358875 57654333344443

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.95  E-value=1.3e-09  Score=99.97  Aligned_cols=77  Identities=9%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++.+|||||||+|..+..++..  +.+|+|+|+++.+++.|+++...  .++++++++|+.++++...         ..
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~---------~~  139 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKD---------VR  139 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTT---------TT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccccc---------cc
Confidence            46789999999999999999964  67999999999999999988753  2479999999988764210         12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +.||+|+++.
T Consensus       140 ~~fD~V~~~~  149 (240)
T 1xdz_A          140 ESYDIVTARA  149 (240)
T ss_dssp             TCEEEEEEEC
T ss_pred             CCccEEEEec
Confidence            5799999875

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.95  E-value=2.2e-08  Score=102.60  Aligned_cols=104  Identities=15%  Similarity=0.207  Sum_probs=83.3

Q ss_pred             ccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---------------CCcEEEEeCCHHHHHHHHH
Q 016715          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       117 ~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---------------~~~V~avE~d~~~~~~a~~  181 (384)
                      ...|| |.|++.+++.|++.+.+.++++|+|..||+|.+...+.+.               ...++|+|+++.++..|+.
T Consensus       194 g~~Gq-fyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~m  272 (530)
T 3ufb_A          194 GDSGE-FYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM  272 (530)
T ss_dssp             SSCCC-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHH
T ss_pred             CcCce-ECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHH
Confidence            35688 8899999999999999999999999999999998776542               2369999999999999988


Q ss_pred             Hhc--CCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          182 RFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       182 ~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ++.  ..+...+.++|.+..+..+..        ....||+|++||||..
T Consensus       273 Nl~lhg~~~~~I~~~dtL~~~~~~~~--------~~~~fD~Il~NPPf~~  314 (530)
T 3ufb_A          273 NLLLHGLEYPRIDPENSLRFPLREMG--------DKDRVDVILTNPPFGG  314 (530)
T ss_dssp             HHHHHTCSCCEEECSCTTCSCGGGCC--------GGGCBSEEEECCCSSC
T ss_pred             HHHhcCCccccccccccccCchhhhc--------ccccceEEEecCCCCc
Confidence            754  334567889999876654311        1257999999999953

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.95  E-value=2.6e-09  Score=99.07  Aligned_cols=69  Identities=25%  Similarity=0.333  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++...  +  ++.+|+.++++.+            +.||.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~--~--~~~~d~~~~~~~~------------~~fD~  117 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK--N--VVEAKAEDLPFPS------------GAFEA  117 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS--C--EEECCTTSCCSCT------------TCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC--C--EEECcHHHCCCCC------------CCEEE
Confidence            678999999999999999999999999999999999999988652  2  8899998877543            57999


Q ss_pred             Eeecc
Q 016715          221 VVANI  225 (384)
Q Consensus       221 Vv~Nl  225 (384)
                      |+++.
T Consensus       118 v~~~~  122 (260)
T 2avn_A          118 VLALG  122 (260)
T ss_dssp             EEECS
T ss_pred             EEEcc
Confidence            98864

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.95  E-value=2e-09  Score=97.28  Aligned_cols=76  Identities=24%  Similarity=0.304  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-------CeEEEEccccccchhhhhhhHHhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-------~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      .++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++....+       +++++.+|+.++++.+         
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---------   99 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD---------   99 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT---------
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC---------
Confidence            367899999999999999999999999999999999999999876432       5899999999887543         


Q ss_pred             ccCCCcceEeeccCc
Q 016715          213 KSSSGFAKVVANIPF  227 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy  227 (384)
                         +.||+|+++..+
T Consensus       100 ---~~~D~v~~~~~l  111 (235)
T 3sm3_A          100 ---SSFDFAVMQAFL  111 (235)
T ss_dssp             ---TCEEEEEEESCG
T ss_pred             ---CceeEEEEcchh
Confidence               679999987655

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.95  E-value=7e-10  Score=109.24  Aligned_cols=96  Identities=18%  Similarity=0.136  Sum_probs=72.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~  200 (384)
                      |..+......++..+   ++++|||+|||+|.++..++..+.+|+++|+++.+++.|++++..+  ++++++++|+.+..
T Consensus       194 ~f~~~~~~~~~~~~~---~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~  270 (382)
T 1wxx_A          194 AYLDQRENRLYMERF---RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL  270 (382)
T ss_dssp             CCGGGHHHHHHGGGC---CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH
T ss_pred             cccchHHHHHHHHhc---CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHH
Confidence            333444444444443   6789999999999999999998779999999999999999998643  36999999998763


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ...     .   .....||+|+.|+|+..
T Consensus       271 ~~~-----~---~~~~~fD~Ii~dpP~~~  291 (382)
T 1wxx_A          271 RRL-----E---KEGERFDLVVLDPPAFA  291 (382)
T ss_dssp             HHH-----H---HTTCCEEEEEECCCCSC
T ss_pred             HHH-----H---hcCCCeeEEEECCCCCC
Confidence            210     0   01357999999999843

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.95  E-value=2.3e-09  Score=113.19  Aligned_cols=88  Identities=10%  Similarity=0.149  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhc--------CCCCeEEEEccc
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFA--------SIDQLKVLQEDF  196 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~--------~~~~v~~~~gD~  196 (384)
                      ..++.+++.+...++.+|||||||+|.++..|++.+   .+|+|||+++.|++.|++++.        ..++++++++|+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            356667777777788999999999999999999987   699999999999999988653        224799999999


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      .++++.+            +.||+|+++-.+
T Consensus       788 ~dLp~~d------------~sFDlVV~~eVL  806 (950)
T 3htx_A          788 LEFDSRL------------HDVDIGTCLEVI  806 (950)
T ss_dssp             TSCCTTS------------CSCCEEEEESCG
T ss_pred             HhCCccc------------CCeeEEEEeCch
Confidence            9987653            689999987555

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.94  E-value=3.6e-09  Score=99.34  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      +.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++...   .+++++++|+.+.++..           
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----------  130 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-----------  130 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-----------
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC-----------
Confidence            45788999999999999999988876 9999999999999999988653   36899999999876521           


Q ss_pred             CCCcceEeeccCcc
Q 016715          215 SSGFAKVVANIPFN  228 (384)
Q Consensus       215 ~~~~d~Vv~NlPy~  228 (384)
                      .+.||+|+++..++
T Consensus       131 ~~~fD~v~~~~~l~  144 (298)
T 1ri5_A          131 GKEFDVISSQFSFH  144 (298)
T ss_dssp             SSCEEEEEEESCGG
T ss_pred             CCCcCEEEECchhh
Confidence            26799999886553

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.94  E-value=4.8e-10  Score=104.65  Aligned_cols=87  Identities=14%  Similarity=0.037  Sum_probs=65.9

Q ss_pred             HHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCH-------HHHHHHHHHhcCC---CCeEEEEccccccchhhh
Q 016715          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ-------HMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~-------~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (384)
                      +.+...++++|||+|||+|.++..++..+++|+++|+++       .+++.++++...+   ++++++++|+.++.... 
T Consensus        77 ~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~-  155 (258)
T 2r6z_A           77 KAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPAL-  155 (258)
T ss_dssp             HHTTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHH-
T ss_pred             HHhCcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhh-
Confidence            333445678999999999999999999999999999999       8888888765432   35999999998752110 


Q ss_pred             hhhHHhhhccCCCcceEeeccCccc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                          ..   ....||+|+.|+||..
T Consensus       156 ----~~---~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          156 ----VK---TQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             ----HH---HHCCCSEEEECCCC--
T ss_pred             ----hc---cCCCccEEEECCCCCC
Confidence                00   0147999999999854

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.94  E-value=2.8e-09  Score=96.61  Aligned_cols=105  Identities=18%  Similarity=0.162  Sum_probs=77.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~  196 (384)
                      +..++.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...   ++++++++|+
T Consensus        51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH
Confidence            5667777666665555667889999999999999999986   569999999999999999987543   4899999998


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCccccHHH
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~i  233 (384)
                      .+....     +... ...+.||+|+++.+......+
T Consensus       131 ~~~~~~-----~~~~-~~~~~~D~v~~d~~~~~~~~~  161 (229)
T 2avd_A          131 LETLDE-----LLAA-GEAGTFDVAVVDADKENCSAY  161 (229)
T ss_dssp             HHHHHH-----HHHT-TCTTCEEEEEECSCSTTHHHH
T ss_pred             HHHHHH-----HHhc-CCCCCccEEEECCCHHHHHHH
Confidence            764211     0000 001479999999875433333

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.94  E-value=3.3e-09  Score=97.85  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccch
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI  201 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~  201 (384)
                      .++++|||||||+|+++..+++.+.  +|+|+|+|+.+++.|++++..+   +++++..+|+++...
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~   86 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE   86 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC
Confidence            3678999999999999999999863  7999999999999999998754   369999999988653

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.94  E-value=1.3e-09  Score=103.62  Aligned_cols=79  Identities=19%  Similarity=0.150  Sum_probs=66.1

Q ss_pred             cCCCCCEEEEEcCcchHHHHHHH--Hc-CCcEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhhhHHhh
Q 016715          138 AVQEGDIVLEIGPGTGSLTNVLL--NA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La--~~-~~~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      .+.++.+|||||||+|..+..++  .. +.+|+|+|+++.+++.+++++...+   +++++++|+.+++++         
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------  185 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR---------  185 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC---------
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc---------
Confidence            35678899999999999999985  22 5699999999999999999987532   599999999997643         


Q ss_pred             hccCCCcceEeeccCccc
Q 016715          212 RKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i  229 (384)
                          +.||+|+++.+++.
T Consensus       186 ----~~fD~v~~~~~~~~  199 (305)
T 3ocj_A          186 ----EGYDLLTSNGLNIY  199 (305)
T ss_dssp             ----SCEEEEECCSSGGG
T ss_pred             ----CCeEEEEECChhhh
Confidence                57999999877643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.93  E-value=2e-09  Score=96.25  Aligned_cols=78  Identities=18%  Similarity=0.203  Sum_probs=64.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHh
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~  210 (384)
                      .++..+.. ++.+|||||||+|.++..+   +. +|+++|+++.+++.++++.   ++++++++|+.++++.+       
T Consensus        28 ~~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~~-------   93 (211)
T 2gs9_A           28 RALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALPFPG-------   93 (211)
T ss_dssp             HHHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCCSCS-------
T ss_pred             HHHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCCCCC-------
Confidence            34444433 6789999999999999888   67 9999999999999999886   58999999999887543       


Q ss_pred             hhccCCCcceEeeccCcc
Q 016715          211 RRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       211 ~~~~~~~~d~Vv~NlPy~  228 (384)
                           +.||+|+++..++
T Consensus        94 -----~~fD~v~~~~~l~  106 (211)
T 2gs9_A           94 -----ESFDVVLLFTTLE  106 (211)
T ss_dssp             -----SCEEEEEEESCTT
T ss_pred             -----CcEEEEEEcChhh
Confidence                 5799999886553

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.93  E-value=1.8e-09  Score=104.59  Aligned_cols=88  Identities=16%  Similarity=0.263  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|||+|||+|.++.. ++.+.+|+|+|+++.+++.+++++..+   ++++++++|+.++.               .
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------------~  257 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------------V  257 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------------C
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------------C
Confidence            4788999999999999999 876669999999999999999998643   47999999998864               3


Q ss_pred             CcceEeeccCcccc---HHHHHHhcccCCC
Q 016715          217 GFAKVVANIPFNIS---TDVIKQLLPMGDI  243 (384)
Q Consensus       217 ~~d~Vv~NlPy~i~---~~il~~L~~~g~~  243 (384)
                      .||+|++|+|+...   ..+...|.++|.+
T Consensus       258 ~fD~Vi~dpP~~~~~~l~~~~~~L~~gG~l  287 (336)
T 2yx1_A          258 KGNRVIMNLPKFAHKFIDKALDIVEEGGVI  287 (336)
T ss_dssp             CEEEEEECCTTTGGGGHHHHHHHEEEEEEE
T ss_pred             CCcEEEECCcHhHHHHHHHHHHHcCCCCEE
Confidence            68999999997543   3344455555543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.93  E-value=1.8e-09  Score=103.01  Aligned_cols=94  Identities=13%  Similarity=0.159  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc------CCCCeEEEEc
Q 016715          126 NSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQE  194 (384)
Q Consensus       126 ~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~g  194 (384)
                      +......++..+.   ..++.+|||||||+|.++..+++.  ..+|++||+|+.+++.+++++.      ..++++++.+
T Consensus        77 de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~  156 (304)
T 3bwc_A           77 DEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVG  156 (304)
T ss_dssp             THHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES
T ss_pred             cchHHHHHHhhhhhhcCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC
Confidence            3444444444332   245689999999999999999987  4599999999999999998762      2358999999


Q ss_pred             cccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      |+.++....          ..+.||+|++|.+...
T Consensus       157 D~~~~~~~~----------~~~~fDvIi~d~~~~~  181 (304)
T 3bwc_A          157 DGLAFVRQT----------PDNTYDVVIIDTTDPA  181 (304)
T ss_dssp             CHHHHHHSS----------CTTCEEEEEEECC---
T ss_pred             cHHHHHHhc----------cCCceeEEEECCCCcc
Confidence            998764320          1257999999987543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.93  E-value=2.2e-09  Score=98.90  Aligned_cols=78  Identities=21%  Similarity=0.282  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhc----------CCCCeEEEEccccc-cchhhhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA----------SIDQLKVLQEDFVK-CHIRSHML  206 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~----------~~~~v~~~~gD~~~-~~~~~~~~  206 (384)
                      .++.+|||||||+|.++..++..+  .+|+|||+++.+++.+++++.          ..+|++++++|+.+ ++  ..+ 
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~--~~~-  124 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLP--NFF-  124 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGG--GTS-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHH--Hhc-
Confidence            367799999999999999999985  479999999999999988764          23589999999987 33  100 


Q ss_pred             hHHhhhccCCCcceEeeccCc
Q 016715          207 SLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                             ..+.+|.|+.+.|-
T Consensus       125 -------~~~~~d~v~~~~p~  138 (246)
T 2vdv_E          125 -------EKGQLSKMFFCFPD  138 (246)
T ss_dssp             -------CTTCEEEEEEESCC
T ss_pred             -------cccccCEEEEECCC
Confidence                   12568888777543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.92  E-value=1.6e-09  Score=102.58  Aligned_cols=44  Identities=20%  Similarity=0.378  Sum_probs=40.1

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~  184 (384)
                      ++.+|||||||+|.++..++..  +.+|+|||+|+.+++.|++++.
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~   91 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIR   91 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHH
Confidence            6789999999999999999998  6799999999999999998754

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.91  E-value=3.3e-09  Score=95.08  Aligned_cols=84  Identities=17%  Similarity=0.216  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...   ++++++++|+.+....           
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----------  123 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG-----------  123 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT-----------
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc-----------
Confidence            45679999999999999999987   579999999999999999887532   3699999999764211           


Q ss_pred             cCCCcceEeeccCccccHHHHH
Q 016715          214 SSSGFAKVVANIPFNISTDVIK  235 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy~i~~~il~  235 (384)
                      ..+ ||.|+++.+..-...++.
T Consensus       124 ~~~-fD~v~~~~~~~~~~~~l~  144 (210)
T 3c3p_A          124 QRD-IDILFMDCDVFNGADVLE  144 (210)
T ss_dssp             CCS-EEEEEEETTTSCHHHHHH
T ss_pred             CCC-CCEEEEcCChhhhHHHHH
Confidence            125 999998866544444444

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.91  E-value=2.4e-09  Score=95.39  Aligned_cols=85  Identities=14%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhcCC---CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715          128 EINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (384)
Q Consensus       128 ~~~~~il~~l~~~---~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~  200 (384)
                      .+.+.+++.+...   ++.+|||+|||+|.++..++..  +.+|+++|+++.+++.++++....  ++++++++|+.+.+
T Consensus        49 ~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  128 (207)
T 1jsx_A           49 MLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP  128 (207)
T ss_dssp             HHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC
T ss_pred             HHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC
Confidence            3456666665432   3789999999999999999987  679999999999999999987643  36999999998865


Q ss_pred             hhhhhhhHHhhhccCCCcceEeecc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      .             .+.||+|++|.
T Consensus       129 ~-------------~~~~D~i~~~~  140 (207)
T 1jsx_A          129 S-------------EPPFDGVISRA  140 (207)
T ss_dssp             C-------------CSCEEEEECSC
T ss_pred             c-------------cCCcCEEEEec
Confidence            2             15799999874

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.90  E-value=1.9e-09  Score=106.66  Aligned_cols=79  Identities=15%  Similarity=0.174  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +|.+|||+|||+|..+..+++.+.+|++||+|+.+++.+++++...    ++++++++|+.++....          ...
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~----------~~~  162 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLI----------KTF  162 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHH----------HHH
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhc----------cCC
Confidence            4789999999999999999999999999999999999999998633    57999999998852110          014


Q ss_pred             CcceEeeccCccc
Q 016715          217 GFAKVVANIPFNI  229 (384)
Q Consensus       217 ~~d~Vv~NlPy~i  229 (384)
                      .||+|+.|+||.-
T Consensus       163 ~fDvV~lDPPrr~  175 (410)
T 3ll7_A          163 HPDYIYVDPARRS  175 (410)
T ss_dssp             CCSEEEECCEEC-
T ss_pred             CceEEEECCCCcC
Confidence            7999999999965

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.90  E-value=5.9e-09  Score=94.89  Aligned_cols=82  Identities=16%  Similarity=0.243  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ...+.+.+.+.  ++.+|||||||+|.++..+++. .+|+++|+++.+++.++++.... .+++++++|+.+.++.    
T Consensus        22 ~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----   94 (243)
T 3d2l_A           22 EWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP----   94 (243)
T ss_dssp             HHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS----
T ss_pred             HHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC----
Confidence            45566666654  4689999999999999999988 89999999999999999987633 4799999999887542    


Q ss_pred             hHHhhhccCCCcceEeecc
Q 016715          207 SLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~Nl  225 (384)
                               +.||+|+++.
T Consensus        95 ---------~~fD~v~~~~  104 (243)
T 3d2l_A           95 ---------EPVDAITILC  104 (243)
T ss_dssp             ---------SCEEEEEECT
T ss_pred             ---------CCcCEEEEeC
Confidence                     5799999864

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.90  E-value=7.1e-09  Score=98.79  Aligned_cols=97  Identities=12%  Similarity=0.111  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcC--CCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC---------CCCeEEEEcc
Q 016715          128 EINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS---------IDQLKVLQED  195 (384)
Q Consensus       128 ~~~~~il~~l~~--~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~---------~~~v~~~~gD  195 (384)
                      .++..+++.+..  .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++...         ..+++++++|
T Consensus        19 ~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D   98 (313)
T 3bgv_A           19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD   98 (313)
T ss_dssp             HHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred             HHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence            344555555432  26789999999999999999976 56999999999999999988642         2379999999


Q ss_pred             ccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      +.+.++.+.+.      ...+.||+|+++..+++.
T Consensus        99 ~~~~~~~~~~~------~~~~~fD~V~~~~~l~~~  127 (313)
T 3bgv_A           99 SSKELLIDKFR------DPQMCFDICSCQFVCHYS  127 (313)
T ss_dssp             TTTSCSTTTCS------STTCCEEEEEEETCGGGG
T ss_pred             ccccchhhhcc------cCCCCEEEEEEecchhhc
Confidence            99876221100      012479999999877554

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.90  E-value=3.9e-09  Score=96.63  Aligned_cols=120  Identities=13%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~  196 (384)
                      ....+...+.+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...   ++++++.+|+
T Consensus        42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            4677888887777776667889999999999999999987   579999999999999999987543   2599999998


Q ss_pred             cccchhhhh----hhHHhhhcc-C-CCcceEeeccCccccH----HHHHHhcccCCC
Q 016715          197 VKCHIRSHM----LSLFERRKS-S-SGFAKVVANIPFNIST----DVIKQLLPMGDI  243 (384)
Q Consensus       197 ~~~~~~~~~----~~~~~~~~~-~-~~~d~Vv~NlPy~i~~----~il~~L~~~g~~  243 (384)
                      .+.......    ..|... .. . +.||+|+.+.......    .+...|.++|.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~-f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~l  177 (239)
T 2hnk_A          122 LETLQVLIDSKSAPSWASD-FAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLL  177 (239)
T ss_dssp             HHHHHHHHHCSSCCGGGTT-TCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHHHHhhccccccccc-ccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence            763211000    000000 01 1 5799999886543323    333445555543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.90  E-value=2.6e-09  Score=102.03  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ..+.+|||||||+|.++..+++..  .+|++||+|+.+++.|++++..      .++++++.+|+.+....         
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~---------  164 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ---------  164 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT---------
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh---------
Confidence            456899999999999999999873  6899999999999999998642      46899999999774211         


Q ss_pred             hccCCCcceEeeccCcc
Q 016715          212 RKSSSGFAKVVANIPFN  228 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~  228 (384)
                        ..+.||+|++|.+..
T Consensus       165 --~~~~fD~Ii~d~~~~  179 (304)
T 2o07_A          165 --NQDAFDVIITDSSDP  179 (304)
T ss_dssp             --CSSCEEEEEEECC--
T ss_pred             --CCCCceEEEECCCCC
Confidence              125799999998764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.89  E-value=8.6e-10  Score=100.71  Aligned_cols=78  Identities=9%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCC-HHHHHHH---HHHhcC--CCCeEEEEccccccchhhhhhhHHhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKD-QHMVGLV---RERFAS--IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d-~~~~~~a---~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      .++++|||||||+|.++..+++.  +.+|+|||++ +.|++.|   +++...  .+++.++++|+.+++...        
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~--------   94 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFEL--------   94 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGG--------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhc--------
Confidence            46789999999999999999954  6689999999 7777776   655543  348999999999885321        


Q ss_pred             hccCCCcceEeeccCcc
Q 016715          212 RKSSSGFAKVVANIPFN  228 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~  228 (384)
                         .+.++.|+.|+|+.
T Consensus        95 ---~d~v~~i~~~~~~~  108 (225)
T 3p2e_A           95 ---KNIADSISILFPWG  108 (225)
T ss_dssp             ---TTCEEEEEEESCCH
T ss_pred             ---cCeEEEEEEeCCCc
Confidence               14577888888753

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.89  E-value=1.6e-09  Score=101.05  Aligned_cols=89  Identities=17%  Similarity=0.259  Sum_probs=69.5

Q ss_pred             HHHHHHhcCCCC--CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC----------C-CCeEEEEcccc
Q 016715          131 DQLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS----------I-DQLKVLQEDFV  197 (384)
Q Consensus       131 ~~il~~l~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~----------~-~~v~~~~gD~~  197 (384)
                      +.+++.+.+.++  .+|||+|||+|..+..++.+|++|++||+++.+++.+++++..          . .+++++++|+.
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~  155 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence            345666666667  8999999999999999999999999999999987777665421          1 36999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                      ++...           ..+.||+|+.|+||...
T Consensus       156 ~~L~~-----------~~~~fDvV~lDP~y~~~  177 (258)
T 2oyr_A          156 TALTD-----------ITPRPQVVYLDPMFPHK  177 (258)
T ss_dssp             HHSTT-----------CSSCCSEEEECCCCCCC
T ss_pred             HHHHh-----------CcccCCEEEEcCCCCCc
Confidence            75321           11369999999999543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.89  E-value=2.2e-09  Score=98.25  Aligned_cols=75  Identities=11%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      ++.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++++...  .+++++.+|+.++++.+            +.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~------------~~  146 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP------------DS  146 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS------------SC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCC------------CC
Confidence            57899999999999999998884 59999999999999999987643  36899999998876542            57


Q ss_pred             cceEeeccCc
Q 016715          218 FAKVVANIPF  227 (384)
Q Consensus       218 ~d~Vv~NlPy  227 (384)
                      ||+|+++..+
T Consensus       147 fD~v~~~~~l  156 (241)
T 2ex4_A          147 YDVIWIQWVI  156 (241)
T ss_dssp             EEEEEEESCG
T ss_pred             EEEEEEcchh
Confidence            9999987544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.88  E-value=1e-09  Score=101.29  Aligned_cols=115  Identities=13%  Similarity=0.124  Sum_probs=80.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~  196 (384)
                      +..++.....+...+...++.+|||||||+|+.|..+++.   +.+|+++|+++.+++.|++++...   ++++++++|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            4466666666655555556789999999999999999985   569999999999999999987643   4899999999


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCccccHH----HHHHhcccCCC
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD----VIKQLLPMGDI  243 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~----il~~L~~~g~~  243 (384)
                      .+.....     ... ...+.||.|+.+.+..-...    +...|.++|.+
T Consensus       122 ~~~l~~~-----~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  166 (242)
T 3r3h_A          122 LDTLHSL-----LNE-GGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLI  166 (242)
T ss_dssp             HHHHHHH-----HHH-HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHHH-----hhc-cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEE
Confidence            8753210     000 00267999999876533333    33444555533

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.87  E-value=4.1e-09  Score=101.10  Aligned_cols=79  Identities=15%  Similarity=0.246  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEccccccchhhhhhhHHh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~~~~~  210 (384)
                      ..+.+|||||||+|.++..+++.  +.+|++||+|+.+++.+++++..       .++++++.+|+.+....        
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--------  147 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--------  147 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh--------
Confidence            35679999999999999999987  46899999999999999987642       36899999999874211        


Q ss_pred             hhccCCCcceEeeccCccc
Q 016715          211 RRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       211 ~~~~~~~~d~Vv~NlPy~i  229 (384)
                         ..+.||+|++|.+...
T Consensus       148 ---~~~~fD~Ii~d~~~~~  163 (314)
T 1uir_A          148 ---TEERYDVVIIDLTDPV  163 (314)
T ss_dssp             ---CCCCEEEEEEECCCCB
T ss_pred             ---cCCCccEEEECCCCcc
Confidence               1257999999987755

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.87  E-value=9e-09  Score=93.94  Aligned_cols=60  Identities=17%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~  199 (384)
                      .++++|||||||+|+++..+++.+  .+|+|+|+++.+++.|++++..+   ++++++.+|+++.
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~   78 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA   78 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh
Confidence            367899999999999999999986  38999999999999999998754   3699999999763

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.87  E-value=3.6e-09  Score=108.77  Aligned_cols=102  Identities=18%  Similarity=0.109  Sum_probs=81.0

Q ss_pred             CcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-----------------CCcEEEEeCCHHHHH
Q 016715          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----------------GATVLAIEKDQHMVG  177 (384)
Q Consensus       115 ~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-----------------~~~V~avE~d~~~~~  177 (384)
                      .++..|| |.+++.+++.|++.+.+.++ +|||.+||+|.+...+++.                 ...++|+|+++.+++
T Consensus       220 ~~k~~G~-fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~  297 (544)
T 3khk_A          220 EGKQGGQ-YYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWK  297 (544)
T ss_dssp             TTCCSTT-TCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHH
T ss_pred             hCccCCe-EeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHH
Confidence            4567788 88999999999999988766 9999999999998776542                 347999999999999


Q ss_pred             HHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          178 LVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       178 ~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      .|+.++...   .++.+.++|.+..+..           ....||+||+|+||..
T Consensus       298 lA~~Nl~l~gi~~~i~i~~gDtL~~~~~-----------~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          298 LAAMNMVIRGIDFNFGKKNADSFLDDQH-----------PDLRADFVMTNPPFNM  341 (544)
T ss_dssp             HHHHHHHHTTCCCBCCSSSCCTTTSCSC-----------TTCCEEEEEECCCSSC
T ss_pred             HHHHHHHHhCCCcccceeccchhcCccc-----------ccccccEEEECCCcCC
Confidence            999886532   2444488888765421           1257999999999975

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.87  E-value=2.6e-09  Score=99.04  Aligned_cols=77  Identities=17%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++.+|||||||+|..+..++..  +.+|+++|+++.+++.|+++...  ..+++++++|+.+++....         ..
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~---------~~  149 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAG---------HR  149 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTT---------TT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccc---------cC
Confidence            46789999999999999999986  56999999999999999998763  3479999999988764210         12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +.||+|+++.
T Consensus       150 ~~fD~I~s~a  159 (249)
T 3g89_A          150 EAYARAVARA  159 (249)
T ss_dssp             TCEEEEEEES
T ss_pred             CCceEEEECC
Confidence            5799999874

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.87  E-value=1.1e-08  Score=92.89  Aligned_cols=68  Identities=21%  Similarity=0.320  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.   ++++++++|+.++++.             +.||
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~-------------~~~D  102 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL---PDATLHQGDMRDFRLG-------------RKFS  102 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC---TTCEEEECCTTTCCCS-------------SCEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC---CCCEEEECCHHHcccC-------------CCCc
Confidence            46789999999999999999999889999999999999999875   4799999999887642             5799


Q ss_pred             eEee
Q 016715          220 KVVA  223 (384)
Q Consensus       220 ~Vv~  223 (384)
                      +|++
T Consensus       103 ~v~~  106 (239)
T 3bxo_A          103 AVVS  106 (239)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9994

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.87  E-value=6.3e-09  Score=110.14  Aligned_cols=93  Identities=15%  Similarity=0.178  Sum_probs=72.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVK  198 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~  198 (384)
                      ..+.+....++..+.  ++.+|||+|||+|.++..++..|+ +|++||+|+.+++.+++++..+    ++++++++|+.+
T Consensus       524 f~d~r~~r~~l~~~~--~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~  601 (703)
T 3v97_A          524 FLDHRIARRMLGQMS--KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA  601 (703)
T ss_dssp             CGGGHHHHHHHHHHC--TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHH
T ss_pred             cccHHHHHHHHHHhc--CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence            334444444444433  678999999999999999998877 5999999999999999998643    379999999987


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      +...           ....||+|++|+|+..
T Consensus       602 ~l~~-----------~~~~fD~Ii~DPP~f~  621 (703)
T 3v97_A          602 WLRE-----------ANEQFDLIFIDPPTFS  621 (703)
T ss_dssp             HHHH-----------CCCCEEEEEECCCSBC
T ss_pred             HHHh-----------cCCCccEEEECCcccc
Confidence            4211           1257999999999843

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.86  E-value=6e-09  Score=107.87  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      .+.+|||||||.|.++..|+++|++|+|||.++.+++.|+......+  ++++.++|++++....          ..+.|
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~----------~~~~f  135 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAAL----------EEGEF  135 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHC----------CTTSC
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhc----------cCCCc
Confidence            45699999999999999999999999999999999999999876543  7899999998874221          22579


Q ss_pred             ceEeeccCc
Q 016715          219 AKVVANIPF  227 (384)
Q Consensus       219 d~Vv~NlPy  227 (384)
                      |+|++.-.+
T Consensus       136 D~v~~~e~~  144 (569)
T 4azs_A          136 DLAIGLSVF  144 (569)
T ss_dssp             SEEEEESCH
T ss_pred             cEEEECcch
Confidence            999886444

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.86  E-value=2.9e-09  Score=100.25  Aligned_cols=77  Identities=13%  Similarity=0.220  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhc------CCCCeEEEEccccccchhhhhhhHHhhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      .+.+|||||||+|.++..+++. + .+|++||+|+.+++.+++++.      ..++++++.+|+.+....          
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~----------  144 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----------  144 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----------
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----------
Confidence            4679999999999999999987 4 599999999999999999863      135899999999864211          


Q ss_pred             ccCCCcceEeeccCcc
Q 016715          213 KSSSGFAKVVANIPFN  228 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~  228 (384)
                       ..+.||+|++|+|..
T Consensus       145 -~~~~fD~Ii~d~~~~  159 (275)
T 1iy9_A          145 -SENQYDVIMVDSTEP  159 (275)
T ss_dssp             -CCSCEEEEEESCSSC
T ss_pred             -CCCCeeEEEECCCCC
Confidence             125799999998764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.85  E-value=2.6e-09  Score=91.66  Aligned_cols=86  Identities=17%  Similarity=0.301  Sum_probs=62.7

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       131 ~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ..+++.+. ..++.+|||+|||+|.++..+++.   +.+++++|+++ +++.        ++++++.+|+.+.+..+...
T Consensus        11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~~~   81 (180)
T 1ej0_A           11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKALL   81 (180)
T ss_dssp             HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhhhh
Confidence            34555554 567889999999999999999987   36999999998 6432        58999999998875211100


Q ss_pred             hHHhhhccCCCcceEeeccCccc
Q 016715          207 SLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ..+    ..+.||.|++|.|++.
T Consensus        82 ~~~----~~~~~D~i~~~~~~~~  100 (180)
T 1ej0_A           82 ERV----GDSKVQVVMSDMAPNM  100 (180)
T ss_dssp             HHH----TTCCEEEEEECCCCCC
T ss_pred             ccC----CCCceeEEEECCCccc
Confidence            001    1257999999988754

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.85  E-value=2.9e-09  Score=107.82  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhcCC--CCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccc
Q 016715          128 EINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCH  200 (384)
Q Consensus       128 ~~~~~il~~l~~~--~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~  200 (384)
                      .....+...+.+.  ++++|||+|||+|..|..+++.   +..|+|+|+++.+++.+++++..  ..++.++++|+.+++
T Consensus       102 ~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~  181 (479)
T 2frx_A          102 ASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG  181 (479)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH
T ss_pred             HHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh
Confidence            3334445666777  8999999999999999999986   35899999999999999998863  348999999998865


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ..           ..+.||.|++|+|+.
T Consensus       182 ~~-----------~~~~fD~Il~D~PcS  198 (479)
T 2frx_A          182 AA-----------VPEMFDAILLDAPCS  198 (479)
T ss_dssp             HH-----------STTCEEEEEEECCCC
T ss_pred             hh-----------ccccCCEEEECCCcC
Confidence            31           125799999999973

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.85  E-value=2.2e-09  Score=107.38  Aligned_cols=97  Identities=18%  Similarity=0.245  Sum_probs=78.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~  199 (384)
                      +..++.....++..+.+.++++|||+|||+|..|..+++..  .+|+|+|+++.+++.+++++...+ +++++++|+.+.
T Consensus       228 ~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~  307 (429)
T 1sqg_A          228 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  307 (429)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             eEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhc
Confidence            44455666677778888899999999999999999999974  599999999999999999886443 689999999886


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      +..      +    ..+.||.|++|+|+..
T Consensus       308 ~~~------~----~~~~fD~Vl~D~Pcsg  327 (429)
T 1sqg_A          308 SQW------C----GEQQFDRILLDAPCSA  327 (429)
T ss_dssp             HHH------H----TTCCEEEEEEECCCCC
T ss_pred             hhh------c----ccCCCCEEEEeCCCCc
Confidence            521      0    1257999999999843

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.84  E-value=1.5e-09  Score=109.19  Aligned_cols=91  Identities=16%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccc
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCH  200 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~  200 (384)
                      ++.....+...+.+.++++|||+|||+|..|..+++.   ...|+|+|+|+.+++.+++++..  ..++.++++|+.++.
T Consensus        90 Qd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~  169 (456)
T 3m4x_A           90 QEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV  169 (456)
T ss_dssp             CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH
T ss_pred             ECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh
Confidence            3333445566778889999999999999999999986   35899999999999999998864  348999999998764


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ..           ..+.||+|+.|+|+
T Consensus       170 ~~-----------~~~~FD~Il~DaPC  185 (456)
T 3m4x_A          170 PH-----------FSGFFDRIVVDAPC  185 (456)
T ss_dssp             HH-----------HTTCEEEEEEECCC
T ss_pred             hh-----------ccccCCEEEECCCC
Confidence            21           12579999999995

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.84  E-value=9.6e-09  Score=96.57  Aligned_cols=117  Identities=16%  Similarity=0.077  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhc-CCCCCEEEEEcCcc---hHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          127 SEINDQLAAAAA-VQEGDIVLEIGPGT---GSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       127 ~~~~~~il~~l~-~~~~~~VLEIG~G~---G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      ..+.+++++.+. .....+|||||||+   |.++..+.+.  +.+|+++|+|+.|++.+++++...++++++++|+.+.+
T Consensus        62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~  141 (274)
T 2qe6_A           62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPE  141 (274)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHH
T ss_pred             hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCch
Confidence            455666777665 33457999999999   9988777665  57999999999999999999866578999999998753


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccc-c--------HHHHHHhcccCCCe
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI-S--------TDVIKQLLPMGDIF  244 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i-~--------~~il~~L~~~g~~~  244 (384)
                      ......+. ......+.+|.|+++.-++. .        ..+...|.++|.++
T Consensus       142 ~~~~~~~~-~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~  193 (274)
T 2qe6_A          142 YILNHPDV-RRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLF  193 (274)
T ss_dssp             HHHHSHHH-HHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEE
T ss_pred             hhhccchh-hccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEE
Confidence            21000000 00001146899988754432 2        23344566666543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.84  E-value=7.1e-09  Score=91.83  Aligned_cols=59  Identities=24%  Similarity=0.346  Sum_probs=46.7

Q ss_pred             HHHHhc-CCCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          133 LAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       133 il~~l~-~~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      +.+... +.++.+|||+|||+|.++..++++    +.+|+|+|+++..         ..++++++++|+.+.+
T Consensus        13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDN   76 (201)
T ss_dssp             HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTS
T ss_pred             HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchh
Confidence            444443 457789999999999999999987    3689999999831         2357999999998865

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.84  E-value=1.2e-08  Score=93.62  Aligned_cols=98  Identities=10%  Similarity=0.087  Sum_probs=70.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~  198 (384)
                      ..+.....+...+...++.+|||||||+|+.+..+++.   +.+|+++|+++.+++.+++++...   ++++++++|+.+
T Consensus        54 ~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~  133 (237)
T 3c3y_A           54 TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML  133 (237)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            45554444433344456789999999999999999986   679999999999999999987643   369999999987


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ....     +.......+.||.|+.+.+.
T Consensus       134 ~l~~-----l~~~~~~~~~fD~I~~d~~~  157 (237)
T 3c3y_A          134 ALDN-----LLQGQESEGSYDFGFVDADK  157 (237)
T ss_dssp             HHHH-----HHHSTTCTTCEEEEEECSCG
T ss_pred             HHHH-----HHhccCCCCCcCEEEECCch
Confidence            5211     00000002579999988654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.83  E-value=5.8e-09  Score=92.41  Aligned_cols=86  Identities=10%  Similarity=0.050  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~  204 (384)
                      .+...+.+.+.  +.++|||+|||+|.++..++..  +++|+|+|+|++|++.+++++...+ ...+..+|.....    
T Consensus        38 ~fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~----  111 (200)
T 3fzg_A           38 DFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDV----  111 (200)
T ss_dssp             HHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHH----
T ss_pred             HHHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccC----
Confidence            34555566563  4679999999999999999877  5699999999999999999986533 2233336654432    


Q ss_pred             hhhHHhhhccCCCcceEeeccCcc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                               ..+.+|+|+++--++
T Consensus       112 ---------~~~~~DvVLa~k~LH  126 (200)
T 3fzg_A          112 ---------YKGTYDVVFLLKMLP  126 (200)
T ss_dssp             ---------TTSEEEEEEEETCHH
T ss_pred             ---------CCCCcChhhHhhHHH
Confidence                     225789999875443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.83  E-value=4.1e-09  Score=101.40  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ..+.+|||||||+|.++..+++.  +.+|+++|+|+.+++.+++++..      .++++++++|+.+....         
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~---------  185 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN---------  185 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH---------
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh---------
Confidence            35679999999999999999987  46999999999999999998754      35899999998774211         


Q ss_pred             hccCCCcceEeeccC
Q 016715          212 RKSSSGFAKVVANIP  226 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlP  226 (384)
                        ..+.||+|++|++
T Consensus       186 --~~~~fDvIi~d~~  198 (321)
T 2pt6_A          186 --VTNTYDVIIVDSS  198 (321)
T ss_dssp             --CCSCEEEEEEECC
T ss_pred             --cCCCceEEEECCc
Confidence              1257999999973

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.83  E-value=3.9e-09  Score=102.10  Aligned_cols=77  Identities=17%  Similarity=0.228  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ..+.+|||||||+|.++..+++.  +.+|++||+|+.+++.|++++..      .++++++++|+.+.....        
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~--------  190 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA--------  190 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS--------
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc--------
Confidence            45679999999999999999987  46999999999999999998642      358999999998752110        


Q ss_pred             hccCCCcceEeeccC
Q 016715          212 RKSSSGFAKVVANIP  226 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlP  226 (384)
                        ..+.||+|++|++
T Consensus       191 --~~~~fDlIi~d~~  203 (334)
T 1xj5_A          191 --AEGSYDAVIVDSS  203 (334)
T ss_dssp             --CTTCEEEEEECCC
T ss_pred             --cCCCccEEEECCC
Confidence              1257999999875

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.82  E-value=6.5e-09  Score=95.86  Aligned_cols=83  Identities=10%  Similarity=0.159  Sum_probs=65.3

Q ss_pred             cCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCC----------------------------
Q 016715          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQ----------------------------  188 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~----------------------------  188 (384)
                      ...++.+|||||||+|.++..++..+. +|+|+|+++.+++.+++++...++                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            335678999999999999999998887 999999999999999998765432                            


Q ss_pred             ---e-EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          189 ---L-KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       189 ---v-~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                         + .++++|+.+.+....        ...+.||+|+++..++
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~--------~~~~~fD~v~~~~~l~  168 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGG--------VSLPPADCLLSTLCLD  168 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTT--------CCCCCEEEEEEESCHH
T ss_pred             hhhheeEEEeeeccCCCCCc--------cccCCccEEEEhhhhh
Confidence               7 899999988653110        0125799999876554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.82  E-value=9.1e-09  Score=108.91  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=80.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---------------------------------------
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---------------------------------------  163 (384)
                      .-..+.+++.|+......++..|||.+||+|++...++..+                                       
T Consensus       172 apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          172 APIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             CSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            34668899999999998888999999999999998887642                                       


Q ss_pred             -----CcEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          164 -----ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       164 -----~~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                           .+|+|+|+|+.+++.|+.++...+   .+++.++|+.++..+.          ..+.+|+||+|+||..
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~----------~~~~~d~Iv~NPPYG~  315 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL----------PKGPYGTVLSNPPYGE  315 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC----------TTCCCCEEEECCCCCC
T ss_pred             cccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc----------ccCCCCEEEeCCCccc
Confidence                 479999999999999999986543   5899999999874321          1137899999999954

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.81  E-value=5.6e-09  Score=99.27  Aligned_cols=77  Identities=14%  Similarity=0.155  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      .+.+|||||||+|.++..+++.  ..+|++||+|+.+++.+++++..      .++++++++|+.+....          
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----------  159 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----------  159 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG----------
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----------
Confidence            4579999999999999999987  35999999999999999998632      36899999998774211          


Q ss_pred             ccCCCcceEeeccCcc
Q 016715          213 KSSSGFAKVVANIPFN  228 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~  228 (384)
                       ..+.||+|++|+|..
T Consensus       160 -~~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          160 -FKNEFDVIIIDSTDP  174 (296)
T ss_dssp             -CSSCEEEEEEEC---
T ss_pred             -CCCCceEEEEcCCCc
Confidence             125799999998654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.81  E-value=2.5e-08  Score=93.92  Aligned_cols=95  Identities=22%  Similarity=0.260  Sum_probs=66.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeC-CHHHHHHHHHHh-----cCC-------CCeEEEEc
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK-DQHMVGLVRERF-----ASI-------DQLKVLQE  194 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~-d~~~~~~a~~~~-----~~~-------~~v~~~~g  194 (384)
                      +.+.+.+.....++.+|||||||+|.++..+++.++ +|+++|+ ++.+++.++++.     ...       ++++++..
T Consensus        67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~  146 (281)
T 3bzb_A           67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY  146 (281)
T ss_dssp             HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC
T ss_pred             HHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe
Confidence            445555554455788999999999999999999877 8999999 899999999988     322       36777766


Q ss_pred             cccccchhhhhhhHHhhhccCCCcceEee-ccCccc
Q 016715          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVA-NIPFNI  229 (384)
Q Consensus       195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~-NlPy~i  229 (384)
                      |..+....     +... ...+.||+|++ +..|+.
T Consensus       147 ~~~~~~~~-----~~~~-~~~~~fD~Ii~~dvl~~~  176 (281)
T 3bzb_A          147 RWGDSPDS-----LQRC-TGLQRFQVVLLADLLSFH  176 (281)
T ss_dssp             CTTSCTHH-----HHHH-HSCSSBSEEEEESCCSCG
T ss_pred             cCCCccHH-----HHhh-ccCCCCCEEEEeCcccCh
Confidence            65442110     0000 01257999986 677754

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.80  E-value=1.4e-08  Score=97.22  Aligned_cols=74  Identities=14%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             CEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      .+|||||||+|.++..+++.  +.+|++||+|+.+++.+++++..  .++++++++|+.++....          ..+.|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~----------~~~~f  160 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF----------TPASR  160 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC----------CTTCE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc----------cCCCC
Confidence            39999999999999999984  66999999999999999999864  358999999998753210          12579


Q ss_pred             ceEeeccC
Q 016715          219 AKVVANIP  226 (384)
Q Consensus       219 d~Vv~NlP  226 (384)
                      |+||+|.+
T Consensus       161 DvIi~D~~  168 (317)
T 3gjy_A          161 DVIIRDVF  168 (317)
T ss_dssp             EEEEECCS
T ss_pred             CEEEECCC
Confidence            99999853

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.80  E-value=7.6e-09  Score=97.56  Aligned_cols=76  Identities=20%  Similarity=0.293  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHh----c--------CCCCeEEEEccccccchhhhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERF----A--------SIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~----~--------~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ..+.+|||||||+|.++..+++.+ .+|++||+|+.+++.|++++    .        ..++++++.+|+.+....    
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~----  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc----
Confidence            356799999999999999999884 48999999999999999987    1        135899999998764211    


Q ss_pred             hHHhhhccCCCcceEeeccCc
Q 016715          207 SLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                              .+.||+|++|+|.
T Consensus       150 --------~~~fD~Ii~d~~~  162 (281)
T 1mjf_A          150 --------NRGFDVIIADSTD  162 (281)
T ss_dssp             --------CCCEEEEEEECCC
T ss_pred             --------cCCeeEEEECCCC
Confidence                    2579999999875

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.79  E-value=1.3e-08  Score=91.39  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=63.3

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~  210 (384)
                      ..+++.+. .++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++.     .+++.+|+.+...+.       
T Consensus        23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~-------   89 (230)
T 3cc8_A           23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETMDMPY-------   89 (230)
T ss_dssp             HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-----SEEEESCTTTCCCCS-------
T ss_pred             HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----CcEEEcchhhcCCCC-------
Confidence            34555554 56789999999999999999998889999999999999998764     368899988643211       


Q ss_pred             hhccCCCcceEeeccCc
Q 016715          211 RRKSSSGFAKVVANIPF  227 (384)
Q Consensus       211 ~~~~~~~~d~Vv~NlPy  227 (384)
                         ..+.||+|+++-.+
T Consensus        90 ---~~~~fD~v~~~~~l  103 (230)
T 3cc8_A           90 ---EEEQFDCVIFGDVL  103 (230)
T ss_dssp             ---CTTCEEEEEEESCG
T ss_pred             ---CCCccCEEEECChh
Confidence               12579999987554

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.79  E-value=2.5e-08  Score=105.11  Aligned_cols=115  Identities=15%  Similarity=0.183  Sum_probs=83.7

Q ss_pred             HHHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHH----hc--CCCCCEEEEEcCcchHHHHHHHHcC-----CcEEEEe
Q 016715          102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAA----AA--VQEGDIVLEIGPGTGSLTNVLLNAG-----ATVLAIE  170 (384)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~----l~--~~~~~~VLEIG~G~G~lt~~La~~~-----~~V~avE  170 (384)
                      +.....+.+.....++..|+ |.+++.+++.|++.    +.  ..++.+|||.|||+|.+...+++..     .+++|+|
T Consensus       277 DdL~ell~eya~k~Rkk~Gq-FYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvE  355 (878)
T 3s1s_A          277 DELAELIHDIATRGRGHEGV-VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWAND  355 (878)
T ss_dssp             HHHHHHHHHHHTTSCCCCBS-SSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEEC
T ss_pred             HHHHHHHHHHHHHhCCcCce-EcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEE
Confidence            44444444444566777888 99999999999888    32  2357899999999999999998763     3799999


Q ss_pred             CCHHHHHHH--HHHhcC------CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          171 KDQHMVGLV--RERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       171 ~d~~~~~~a--~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      +|+.+++.|  +.++..      .+...+..+|+......           ....||+||+||||.
T Consensus       356 IDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~-----------~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          356 IETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE-----------DFANVSVVVMNPPYV  410 (878)
T ss_dssp             SCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG-----------GGTTEEEEEECCBCC
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc-----------ccCCCCEEEECCCcc
Confidence            999999999  544432      11345666677664321           125799999999994

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.79  E-value=8e-09  Score=97.82  Aligned_cols=103  Identities=21%  Similarity=0.284  Sum_probs=72.2

Q ss_pred             HHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEE-Eccccccchhhhh
Q 016715          129 INDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHM  205 (384)
Q Consensus       129 ~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~-~gD~~~~~~~~~~  205 (384)
                      -+..+++.+.+. ++.+|||||||||.+|..|++.++ +|+|||+++.|++.+.++   .+++... ..|+..+...+. 
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~~rv~~~~~~ni~~l~~~~l-  147 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---DDRVRSMEQYNFRYAEPVDF-  147 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---CTTEEEECSCCGGGCCGGGC-
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---CcccceecccCceecchhhC-
Confidence            455667777665 577999999999999999999975 899999999999885443   2344433 345555443221 


Q ss_pred             hhHHhhhccCCCcceEeeccCcc----ccHHHHHHhcccCCC
Q 016715          206 LSLFERRKSSSGFAKVVANIPFN----ISTDVIKQLLPMGDI  243 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~----i~~~il~~L~~~g~~  243 (384)
                              ..+.||.|+++..|.    +..++.+.|.++|.+
T Consensus       148 --------~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~l  181 (291)
T 3hp7_A          148 --------TEGLPSFASIDVSFISLNLILPALAKILVDGGQV  181 (291)
T ss_dssp             --------TTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEE
T ss_pred             --------CCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEE
Confidence                    113489999988775    445666677777755

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.78  E-value=1.2e-08  Score=97.63  Aligned_cols=92  Identities=13%  Similarity=0.130  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~  202 (384)
                      .....++..+.+.++++|||+|||+|..|..+++.   ..+|+|+|+++.+++.+++++...  .+++++++|+.+++..
T Consensus        89 ~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~  168 (309)
T 2b9e_A           89 RASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS  168 (309)
T ss_dssp             TGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc
Confidence            33344556678889999999999999999999985   358999999999999999998743  4899999999887542


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCcc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ..         ....||.|+.|+|+.
T Consensus       169 ~~---------~~~~fD~Vl~D~PcS  185 (309)
T 2b9e_A          169 DP---------RYHEVHYILLDPSCS  185 (309)
T ss_dssp             CG---------GGTTEEEEEECCCCC
T ss_pred             cc---------ccCCCCEEEEcCCcC
Confidence            10         014699999999984

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.77  E-value=1.5e-08  Score=92.62  Aligned_cols=96  Identities=11%  Similarity=0.156  Sum_probs=70.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      ..++.....+...+...++.+|||||||+|+.+..+++.   +.+|+++|+++.+++.|++++...   ++++++.+|+.
T Consensus        55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~  134 (232)
T 3cbg_A           55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL  134 (232)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            345555554444444456789999999999999999986   469999999999999999887532   36999999987


Q ss_pred             ccchhhhhhhHHhhhccC--CCcceEeeccCc
Q 016715          198 KCHIRSHMLSLFERRKSS--SGFAKVVANIPF  227 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~--~~~d~Vv~NlPy  227 (384)
                      +.....     .   ...  +.||.|+.+.+.
T Consensus       135 ~~l~~l-----~---~~~~~~~fD~V~~d~~~  158 (232)
T 3cbg_A          135 ATLEQL-----T---QGKPLPEFDLIFIDADK  158 (232)
T ss_dssp             HHHHHH-----H---TSSSCCCEEEEEECSCG
T ss_pred             HHHHHH-----H---hcCCCCCcCEEEECCCH
Confidence            642110     0   011  579999988664

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.77  E-value=8.7e-09  Score=98.83  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ..+.+|||||||+|.++..+++.  +.+|+++|+|+.+++.|++++..      .++++++.+|+.+....         
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---------  177 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---------  177 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---------
Confidence            34579999999999999999987  46999999999999999998753      35899999999874211         


Q ss_pred             hccCCCcceEeeccCc
Q 016715          212 RKSSSGFAKVVANIPF  227 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy  227 (384)
                        ..+.||+|++|.+.
T Consensus       178 --~~~~fD~Ii~d~~~  191 (314)
T 2b2c_A          178 --HKNEFDVIITDSSD  191 (314)
T ss_dssp             --CTTCEEEEEECCC-
T ss_pred             --cCCCceEEEEcCCC
Confidence              12579999998753

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.76  E-value=1.3e-08  Score=97.08  Aligned_cols=100  Identities=16%  Similarity=0.176  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCC--------CeEEEEccccccchhhhhhhHHhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~--------~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ++.+|||||||+|..+..++.. +.+|+|+|+++.|++.|+++....+        ++++.++|+..-.+...   +.. 
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~---l~~-  123 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS---VRE-  123 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHH---HHT-
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhh---hhc-
Confidence            4789999999999866666655 5699999999999999999875322        25677887733211100   000 


Q ss_pred             hccCCCcceEeeccCccc----------cHHHHHHhcccCCCe
Q 016715          212 RKSSSGFAKVVANIPFNI----------STDVIKQLLPMGDIF  244 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i----------~~~il~~L~~~g~~~  244 (384)
                      ....+.||+|++....+.          ...+.+.|+++|.++
T Consensus       124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i  166 (302)
T 2vdw_A          124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVL  166 (302)
T ss_dssp             TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEE
T ss_pred             cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            001258999987654421          123445666666553

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.76  E-value=2.2e-09  Score=98.55  Aligned_cols=109  Identities=17%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEE-ccccccchhhh
Q 016715          128 EINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQ-EDFVKCHIRSH  204 (384)
Q Consensus       128 ~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~-gD~~~~~~~~~  204 (384)
                      .-++++++.+.+. ++.+|||||||+|.++..+++.++ +|+|+|+++.|++.++++..   ++.... .++......+.
T Consensus        23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~---~~~~~~~~~~~~~~~~~~   99 (232)
T 3opn_A           23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE---RVVVMEQFNFRNAVLADF   99 (232)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT---TEEEECSCCGGGCCGGGC
T ss_pred             HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc---cccccccceEEEeCHhHc
Confidence            4456777777655 467999999999999999999985 99999999999999776532   322221 12221111110


Q ss_pred             hhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCe
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~  244 (384)
                      ....+    ....+|.+++++ -.+...+.+.|+++|.++
T Consensus       100 ~~~~~----d~~~~D~v~~~l-~~~l~~i~rvLkpgG~lv  134 (232)
T 3opn_A          100 EQGRP----SFTSIDVSFISL-DLILPPLYEILEKNGEVA  134 (232)
T ss_dssp             CSCCC----SEEEECCSSSCG-GGTHHHHHHHSCTTCEEE
T ss_pred             CcCCC----CEEEEEEEhhhH-HHHHHHHHHhccCCCEEE
Confidence            00000    012456666655 345566777777777653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.75  E-value=2.8e-08  Score=88.30  Aligned_cols=81  Identities=22%  Similarity=0.356  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      +.++.+|||+|||+|.++..+++++.+|+|||+++..         ..++++++++|+.+.+..+...+.+.. ...+.+
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~~~~v~~~~~D~~~~~~~~~~~~~~~~-~~~~~~   92 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------EIAGVRFIRCDIFKETIFDDIDRALRE-EGIEKV   92 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------CCTTCEEEECCTTSSSHHHHHHHHHHH-HTCSSE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------cCCCeEEEEccccCHHHHHHHHHHhhc-ccCCcc
Confidence            4578999999999999999999998899999999741         235899999999887644322222110 001379


Q ss_pred             ceEeeccCccc
Q 016715          219 AKVVANIPFNI  229 (384)
Q Consensus       219 d~Vv~NlPy~i  229 (384)
                      |+|++|.+.+.
T Consensus        93 D~Vlsd~~~~~  103 (191)
T 3dou_A           93 DDVVSDAMAKV  103 (191)
T ss_dssp             EEEEECCCCCC
T ss_pred             eEEecCCCcCC
Confidence            99999976543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.75  E-value=1.8e-08  Score=94.82  Aligned_cols=93  Identities=12%  Similarity=0.033  Sum_probs=63.5

Q ss_pred             HHHHHHHhcC--CCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCC-------------------
Q 016715          130 NDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-------------------  187 (384)
Q Consensus       130 ~~~il~~l~~--~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~-------------------  187 (384)
                      .+.+.+.+..  .++.+|||||||+|.++..++.. +.+|+|+|+++.|++.|++++...+                   
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            4556666543  26789999999999955444443 6799999999999999988654210                   


Q ss_pred             -------------CeEEEEccccc-cchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          188 -------------QLKVLQEDFVK-CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       188 -------------~v~~~~gD~~~-~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                                   .++++.+|+.+ .++.+..       ...+.||+|+++..++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~~~fD~V~~~~~l~~  186 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGS-------PAPLPADALVSAFCLEA  186 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSC-------SSCSSEEEEEEESCHHH
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccc-------cCCCCCCEEEehhhhhh
Confidence                         15677789887 5433200       01246999999976644

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.74  E-value=7.2e-09  Score=104.31  Aligned_cols=91  Identities=20%  Similarity=0.172  Sum_probs=72.7

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccch
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI  201 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~  201 (384)
                      ++.....+...+.+.++++|||+|||+|..|..+++.   ...|+|+|+|+.+++.+++++...+ .+.++++|+.+++.
T Consensus        86 Qd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~  165 (464)
T 3m6w_A           86 QEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAE  165 (464)
T ss_dssp             CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHH
T ss_pred             ECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhh
Confidence            3333455566778889999999999999999999986   2589999999999999999886322 28999999887642


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCc
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      .           ..+.||.|+.|+|+
T Consensus       166 ~-----------~~~~FD~Il~D~Pc  180 (464)
T 3m6w_A          166 A-----------FGTYFHRVLLDAPC  180 (464)
T ss_dssp             H-----------HCSCEEEEEEECCC
T ss_pred             h-----------ccccCCEEEECCCc
Confidence            1           12579999999997

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.74  E-value=1.2e-08  Score=95.04  Aligned_cols=82  Identities=12%  Similarity=0.098  Sum_probs=61.3

Q ss_pred             cCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-----------------------------
Q 016715          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-----------------------------  187 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-----------------------------  187 (384)
                      ...++.+|||||||+|.++..++..++ +|+|+|+|+.|++.|++++...+                             
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            345778999999999999888887776 79999999999999998764321                             


Q ss_pred             --CeE-EEEccccccc-hhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          188 --QLK-VLQEDFVKCH-IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       188 --~v~-~~~gD~~~~~-~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                        +++ ++++|+.+.. +...         ..+.||+|+++.-++
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~---------~~~~fD~V~~~~~l~  167 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPA---------VLPLADCVLTLLAME  167 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTC---------CCCCEEEEEEESCHH
T ss_pred             HhhhheEEeccccCCCCCCcc---------ccCCCCEeeehHHHH
Confidence              233 8899988842 2110         125799999986553

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.73  E-value=4e-09  Score=104.64  Aligned_cols=106  Identities=15%  Similarity=0.122  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ..+++.+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++-.......+..+|+..+++.+   
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~---  169 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTE---  169 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCC---
Confidence            34567777878877889999999999999999999999999999999999999876110001111223333333222   


Q ss_pred             hHHhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCCe
Q 016715          207 SLFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDIF  244 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~~  244 (384)
                               +.||+|+++-.++..       ..+.+.|+++|.++
T Consensus       170 ---------~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~  205 (416)
T 4e2x_A          170 ---------GPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFV  205 (416)
T ss_dssp             ---------CCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------CCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEE
Confidence                     689999988665333       23344555555443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.73  E-value=1.4e-08  Score=95.88  Aligned_cols=77  Identities=18%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      .++.+|||||||+|.++..+++.  +.+|+++|+|+.+++.+++++..      .++++++.+|+.+....         
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---------  147 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN---------  147 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH---------
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh---------
Confidence            35689999999999999999987  36999999999999999998753      35899999999874221         


Q ss_pred             hccCCCcceEeeccCc
Q 016715          212 RKSSSGFAKVVANIPF  227 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy  227 (384)
                        ..+.||+|++|.+.
T Consensus       148 --~~~~fD~Ii~d~~~  161 (283)
T 2i7c_A          148 --VTNTYDVIIVDSSD  161 (283)
T ss_dssp             --CCSCEEEEEEECCC
T ss_pred             --CCCCceEEEEcCCC
Confidence              12679999998653

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.73  E-value=3.4e-08  Score=92.39  Aligned_cols=94  Identities=15%  Similarity=0.238  Sum_probs=78.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (384)
                      -|-+++.+++.+.+.+++.+||.+||.|..|..+++++.+|+|+|.|+.+++.+++ +.. ++++++++|+.+++...  
T Consensus         7 ~pVLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~~L--   82 (285)
T 1wg8_A            7 VPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKRHL--   82 (285)
T ss_dssp             CCTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHHHH--
T ss_pred             hhHHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHHHH--
Confidence            34578899999999999999999999999999999998899999999999999999 765 69999999999875311  


Q ss_pred             hhHHhhhccCCCcceEeeccCcc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                          .. ...+.+|.|+.|+.+.
T Consensus        83 ----~~-~g~~~vDgIL~DLGvS  100 (285)
T 1wg8_A           83 ----AA-LGVERVDGILADLGVS  100 (285)
T ss_dssp             ----HH-TTCSCEEEEEEECSCC
T ss_pred             ----HH-cCCCCcCEEEeCCccc
Confidence                10 1124689999998764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.72  E-value=8.1e-09  Score=96.53  Aligned_cols=88  Identities=10%  Similarity=0.026  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+.+|||||||+|.++..+++.+.+|+++|+|+.+++.|++++..      .++++++.+|+.++.              
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--------------  137 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--------------  137 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--------------
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--------------
Confidence            457999999999999999987767899999999999999886532      358999999998753              


Q ss_pred             CCCcceEeeccC--ccccHHHHHHhcccCCC
Q 016715          215 SSGFAKVVANIP--FNISTDVIKQLLPMGDI  243 (384)
Q Consensus       215 ~~~~d~Vv~NlP--y~i~~~il~~L~~~g~~  243 (384)
                       +.||+|+++.+  ......+...|.++|.+
T Consensus       138 -~~fD~Ii~d~~dp~~~~~~~~~~L~pgG~l  167 (262)
T 2cmg_A          138 -KKYDLIFCLQEPDIHRIDGLKRMLKEDGVF  167 (262)
T ss_dssp             -CCEEEEEESSCCCHHHHHHHHTTEEEEEEE
T ss_pred             -hhCCEEEECCCChHHHHHHHHHhcCCCcEE
Confidence             36899999863  22223444455555544

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.72  E-value=2.9e-08  Score=99.80  Aligned_cols=91  Identities=16%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--C-CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~-~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~  202 (384)
                      .....+...+.+.++++|||+|||+|..|..++..  + .+|+|+|+++.+++.+++++...  ++++++++|+.+.+..
T Consensus       246 ~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~  325 (450)
T 2yxl_A          246 EASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI  325 (450)
T ss_dssp             HHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS
T ss_pred             chhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh
Confidence            33445566678889999999999999999999986  3 68999999999999999987643  4899999999887521


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCcc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      -          ..+.||.|+.|+|+.
T Consensus       326 ~----------~~~~fD~Vl~D~Pcs  341 (450)
T 2yxl_A          326 I----------GEEVADKVLLDAPCT  341 (450)
T ss_dssp             S----------CSSCEEEEEEECCCC
T ss_pred             h----------ccCCCCEEEEcCCCC
Confidence            0          115699999999874

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.68  E-value=8e-09  Score=97.29  Aligned_cols=81  Identities=16%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc---CCC-CeEEE--Eccccccchhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SID-QLKVL--QEDFVKCHIRS  203 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~---~~~-~v~~~--~gD~~~~~~~~  203 (384)
                      ...+.+...+.++.+|||+|||+|.++..++++ .+|+|||+++ |+..+++...   ..+ ++.++  ++|+.+++  +
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~  146 (276)
T 2wa2_A           71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--P  146 (276)
T ss_dssp             HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--C
T ss_pred             HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--C
Confidence            344555544567889999999999999999998 7999999998 5433322110   111 78999  99998864  1


Q ss_pred             hhhhHHhhhccCCCcceEeeccC
Q 016715          204 HMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                                  +.||+|++|..
T Consensus       147 ------------~~fD~Vvsd~~  157 (276)
T 2wa2_A          147 ------------FQADTVLCDIG  157 (276)
T ss_dssp             ------------CCCSEEEECCC
T ss_pred             ------------CCcCEEEECCC
Confidence                        57999999876

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.66  E-value=8.4e-08  Score=91.88  Aligned_cols=90  Identities=10%  Similarity=0.137  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhcC--CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          128 EINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       128 ~~~~~il~~l~~--~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      .....+++.+..  .++.+|||||||+|.++..+++.  +.+++++|++ .+++.+++++...   ++++++.+|+.+.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  228 (335)
T 2r3s_A          150 NPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD  228 (335)
T ss_dssp             HHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC
T ss_pred             hhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence            345577777776  77889999999999999999987  6699999999 9999999886532   36999999998865


Q ss_pred             hhhhhhhHHhhhccCCCcceEeec-cCccccH
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVAN-IPFNIST  231 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~N-lPy~i~~  231 (384)
                      ++             +.+|+|+++ ...++..
T Consensus       229 ~~-------------~~~D~v~~~~~l~~~~~  247 (335)
T 2r3s_A          229 YG-------------NDYDLVLLPNFLHHFDV  247 (335)
T ss_dssp             CC-------------SCEEEEEEESCGGGSCH
T ss_pred             CC-------------CCCcEEEEcchhccCCH
Confidence            43             348999885 4444543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.66  E-value=5.2e-08  Score=94.97  Aligned_cols=83  Identities=22%  Similarity=0.239  Sum_probs=67.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (384)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...   ++++++.+|+.+ +++  
T Consensus       171 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--  246 (374)
T 1qzz_A          171 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP--  246 (374)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS--
T ss_pred             HHHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC--
Confidence            356677777778899999999999999999987  468999999 99999999987543   389999999976 222  


Q ss_pred             hhhHHhhhccCCCcceEeeccCc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                 ..+|+|+++..+
T Consensus       247 -----------~~~D~v~~~~vl  258 (374)
T 1qzz_A          247 -----------VTADVVLLSFVL  258 (374)
T ss_dssp             -----------CCEEEEEEESCG
T ss_pred             -----------CCCCEEEEeccc
Confidence                       248999887554

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.65  E-value=1.1e-08  Score=95.90  Aligned_cols=81  Identities=11%  Similarity=0.073  Sum_probs=60.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc---CCC-CeEEE--Eccccccchhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SID-QLKVL--QEDFVKCHIRS  203 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~---~~~-~v~~~--~gD~~~~~~~~  203 (384)
                      ...+.+...+.++.+|||+|||+|.++..+++. .+|+|||+++ |+..+++...   ..+ ++.++  ++|+.+++  +
T Consensus        63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~  138 (265)
T 2oxt_A           63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--V  138 (265)
T ss_dssp             HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--C
T ss_pred             HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--C
Confidence            455666645667899999999999999999998 8999999998 5332221110   111 78999  89998864  1


Q ss_pred             hhhhHHhhhccCCCcceEeeccC
Q 016715          204 HMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                                  ..||+|++|..
T Consensus       139 ------------~~fD~V~sd~~  149 (265)
T 2oxt_A          139 ------------ERTDVIMCDVG  149 (265)
T ss_dssp             ------------CCCSEEEECCC
T ss_pred             ------------CCCcEEEEeCc
Confidence                        57999999876

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.63  E-value=7.8e-08  Score=93.42  Aligned_cols=85  Identities=16%  Similarity=0.184  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      ...+.+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...   ++++++.+|+.+.+++
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence            45567788887778899999999999999999987  559999999 99999999887532   3699999999887543


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                    ..|+|+++..+
T Consensus       256 --------------~~D~v~~~~vl  266 (359)
T 1x19_A          256 --------------EADAVLFCRIL  266 (359)
T ss_dssp             --------------CCSEEEEESCG
T ss_pred             --------------CCCEEEEechh
Confidence                          23888876555

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.61  E-value=1e-07  Score=83.85  Aligned_cols=77  Identities=16%  Similarity=0.292  Sum_probs=55.9

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc-C----------CcEEEEeCCHHHHHHHHHHhcCCCCeEEE-Eccccccchhhhhh
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA-G----------ATVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHML  206 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~-~----------~~V~avE~d~~~~~~a~~~~~~~~~v~~~-~gD~~~~~~~~~~~  206 (384)
                      +.++++|||+|||+|.++..+++. +          .+|+|+|+++..         ..++++++ .+|+.+.+......
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHH
Confidence            457889999999999999999987 4          689999999831         12578999 99987754322111


Q ss_pred             hHHhhhccCCCcceEeeccCcc
Q 016715          207 SLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ..+    ....||+|++|.+++
T Consensus        91 ~~~----~~~~fD~V~~~~~~~  108 (196)
T 2nyu_A           91 EVL----PGRRADVILSDMAPN  108 (196)
T ss_dssp             HHS----GGGCEEEEEECCCCC
T ss_pred             Hhc----CCCCCcEEEeCCCCC
Confidence            111    124799999987544

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.59  E-value=1.6e-08  Score=96.54  Aligned_cols=79  Identities=10%  Similarity=0.116  Sum_probs=57.0

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeC----CHHHHHHHHHHhcCC--CCeEEEEc-cccccchhhhh
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK----DQHMVGLVRERFASI--DQLKVLQE-DFVKCHIRSHM  205 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~----d~~~~~~a~~~~~~~--~~v~~~~g-D~~~~~~~~~~  205 (384)
                      +.+...+.++.+|||+|||+|.+|..++++ .+|+|||+    ++.++..+.  ....  +++.++++ |+.+++.    
T Consensus        74 i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~~----  146 (305)
T 2p41_A           74 FVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIPP----  146 (305)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSCC----
T ss_pred             HHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCCc----
Confidence            444433457889999999999999999998 68999999    454332111  1111  47999999 8887641    


Q ss_pred             hhHHhhhccCCCcceEeeccCcc
Q 016715          206 LSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                                ..||+|++|.+++
T Consensus       147 ----------~~fD~V~sd~~~~  159 (305)
T 2p41_A          147 ----------ERCDTLLCDIGES  159 (305)
T ss_dssp             ----------CCCSEEEECCCCC
T ss_pred             ----------CCCCEEEECCccc
Confidence                      4799999997653

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.58  E-value=9.5e-08  Score=87.61  Aligned_cols=76  Identities=12%  Similarity=-0.014  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      .+..+|||||||+|-++..+. .+..++|+|+|+.+++.+++++.. ..+..+..+|....+++             +.+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-------------~~~  169 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-------------EAG  169 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-------------CBC
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-------------CCc
Confidence            456799999999999999887 556999999999999999999764 35788999999887654             579


Q ss_pred             ceEeeccCccc
Q 016715          219 AKVVANIPFNI  229 (384)
Q Consensus       219 d~Vv~NlPy~i  229 (384)
                      |+|+++.-++.
T Consensus       170 DvvLllk~lh~  180 (253)
T 3frh_A          170 DLALIFKLLPL  180 (253)
T ss_dssp             SEEEEESCHHH
T ss_pred             chHHHHHHHHH
Confidence            99999865543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.58  E-value=4.2e-08  Score=92.53  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=60.8

Q ss_pred             CCCCEEEEEcCcchHHHHHHH----Hc--CCcE--EEEeCCHHHHHHHHHHhcCC---CCeEE--EEccccccchhhhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLL----NA--GATV--LAIEKDQHMVGLVRERFASI---DQLKV--LQEDFVKCHIRSHML  206 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La----~~--~~~V--~avE~d~~~~~~a~~~~~~~---~~v~~--~~gD~~~~~~~~~~~  206 (384)
                      .++.+|||||||+|.++..++    ..  +..|  +++|+++.|++.+++++...   +++++  ..+|+.+++..    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~----  126 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSR----  126 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHH----
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhh----
Confidence            456799999999998775433    32  3333  99999999999999987532   35544  45565543210    


Q ss_pred             hHHhhhccCCCcceEeeccCccccH-------HHHHHhcccCCC
Q 016715          207 SLFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDI  243 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i~~-------~il~~L~~~g~~  243 (384)
                       +... ...+.||+|+++..++...       .+.+.|+++|.+
T Consensus       127 -~~~~-~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l  168 (292)
T 2aot_A          127 -MLEK-KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKM  168 (292)
T ss_dssp             -HHTT-TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEE
T ss_pred             -hccc-cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEE
Confidence             0000 0126799999886554332       334455666644

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.57  E-value=7.9e-08  Score=94.46  Aligned_cols=83  Identities=11%  Similarity=0.032  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhcCC---------------C--CeEEEEccccccch
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI---------------D--QLKVLQEDFVKCHI  201 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~~~---------------~--~v~~~~gD~~~~~~  201 (384)
                      ++.+|||+|||+|.++..++.. + .+|+++|+|+.+++.+++++..+               +  +++++++|+.++..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            5789999999999999999987 4 58999999999999999987644               2  48999999977532


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCccccHHHHH
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~  235 (384)
                      .           ....||+|+.|+|+. ..+++.
T Consensus       127 ~-----------~~~~fD~I~lDP~~~-~~~~l~  148 (378)
T 2dul_A          127 E-----------RHRYFHFIDLDPFGS-PMEFLD  148 (378)
T ss_dssp             H-----------STTCEEEEEECCSSC-CHHHHH
T ss_pred             h-----------ccCCCCEEEeCCCCC-HHHHHH
Confidence            1           124799999887653 344433

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.56  E-value=1.1e-07  Score=92.09  Aligned_cols=83  Identities=19%  Similarity=0.290  Sum_probs=66.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (384)
                      ...+++.+...++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++++...   ++++++.+|+.+ +++  
T Consensus       172 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--  247 (360)
T 1tw3_A          172 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP--  247 (360)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS--
T ss_pred             HHHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC--
Confidence            3556777777788899999999999999999874  58899999 99999999887542   389999999876 222  


Q ss_pred             hhhHHhhhccCCCcceEeeccCc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                 ..+|+|+++..+
T Consensus       248 -----------~~~D~v~~~~vl  259 (360)
T 1tw3_A          248 -----------RKADAIILSFVL  259 (360)
T ss_dssp             -----------SCEEEEEEESCG
T ss_pred             -----------CCccEEEEcccc
Confidence                       248998876554

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.55  E-value=1.5e-07  Score=90.22  Aligned_cols=88  Identities=15%  Similarity=0.305  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR  202 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~  202 (384)
                      .....+++.++..+ .+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++..   .++++++.+|+.+ +++
T Consensus       155 ~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  231 (334)
T 2ip2_A          155 LAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP  231 (334)
T ss_dssp             HHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC
T ss_pred             HHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC
Confidence            34566777776666 89999999999999999987  568999999 9999999987643   2589999999987 332


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCcc-ccH
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPFN-IST  231 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~-i~~  231 (384)
                                   +.+|+|+++..++ +..
T Consensus       232 -------------~~~D~v~~~~vl~~~~~  248 (334)
T 2ip2_A          232 -------------SNGDIYLLSRIIGDLDE  248 (334)
T ss_dssp             -------------SSCSEEEEESCGGGCCH
T ss_pred             -------------CCCCEEEEchhccCCCH
Confidence                         4689998875553 443

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.55  E-value=9.9e-08  Score=85.89  Aligned_cols=65  Identities=22%  Similarity=0.304  Sum_probs=56.0

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      +.+|||||||+|.++..++..    +++|+++.+++.++++     +++++.+|+.++++.+            +.||+|
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~------------~~fD~v  106 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-----GVFVLKGTAENLPLKD------------ESFDFA  106 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-----TCEEEECBTTBCCSCT------------TCEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-----CCEEEEcccccCCCCC------------CCeeEE
Confidence            779999999999999988765    9999999999999886     6899999998876542            579999


Q ss_pred             eeccCc
Q 016715          222 VANIPF  227 (384)
Q Consensus       222 v~NlPy  227 (384)
                      +++..+
T Consensus       107 ~~~~~l  112 (219)
T 1vlm_A          107 LMVTTI  112 (219)
T ss_dssp             EEESCG
T ss_pred             EEcchH
Confidence            987554

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.55  E-value=3e-07  Score=89.66  Aligned_cols=74  Identities=15%  Similarity=0.277  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc--hhhhhhhHHhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH--IRSHMLSLFERR  212 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~--~~~~~~~~~~~~  212 (384)
                      ....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...   ++++++.+|+.+..  ++          
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p----------  246 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP----------  246 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC----------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC----------
Confidence            45679999999999999999986  568999999 99999999987643   37999999998852  32          


Q ss_pred             ccCCCcceEeeccCc
Q 016715          213 KSSSGFAKVVANIPF  227 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy  227 (384)
                         +.+|+|+++-.+
T Consensus       247 ---~~~D~v~~~~vl  258 (363)
T 3dp7_A          247 ---TGFDAVWMSQFL  258 (363)
T ss_dssp             ---CCCSEEEEESCS
T ss_pred             ---CCcCEEEEechh
Confidence               468998876444

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.53  E-value=1.1e-07  Score=91.86  Aligned_cols=88  Identities=10%  Similarity=0.142  Sum_probs=67.6

Q ss_pred             HHHHHhcCCC-CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhh
Q 016715          132 QLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       132 ~il~~l~~~~-~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (384)
                      .+++.++..+ +.+|||||||+|.++..+++.  +.+++++|+ +.+++.++++....   ++++++.+|+.+.+..   
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---  244 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF---  244 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG---
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc---
Confidence            5666666666 789999999999999999987  568999999 88999999887543   3799999999886510   


Q ss_pred             hhHHhhhccCCCcceEeeccCc-cccH
Q 016715          206 LSLFERRKSSSGFAKVVANIPF-NIST  231 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy-~i~~  231 (384)
                              ..+.+|+|+++..+ ++..
T Consensus       245 --------~~~~~D~v~~~~vlh~~~~  263 (352)
T 3mcz_A          245 --------EGGAADVVMLNDCLHYFDA  263 (352)
T ss_dssp             --------TTCCEEEEEEESCGGGSCH
T ss_pred             --------CCCCccEEEEecccccCCH
Confidence                    01458999886544 3443

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.53  E-value=3.5e-07  Score=89.30  Aligned_cols=87  Identities=25%  Similarity=0.363  Sum_probs=68.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~  204 (384)
                      ...+++.++..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++..   .++++++.+|+.+ +++  
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p--  266 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIP--  266 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCC--
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCC--
Confidence            456677777777889999999999999999987  558999999 9999999988753   2589999999983 221  


Q ss_pred             hhhHHhhhccCCCcceEeeccCc-cccH
Q 016715          205 MLSLFERRKSSSGFAKVVANIPF-NIST  231 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy-~i~~  231 (384)
                                 ..+|+|+++-.+ ++..
T Consensus       267 -----------~~~D~v~~~~vlh~~~d  283 (369)
T 3gwz_A          267 -----------DGADVYLIKHVLHDWDD  283 (369)
T ss_dssp             -----------SSCSEEEEESCGGGSCH
T ss_pred             -----------CCceEEEhhhhhccCCH
Confidence                       268998875443 4443

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.47  E-value=2.5e-07  Score=88.84  Aligned_cols=82  Identities=18%  Similarity=0.243  Sum_probs=62.6

Q ss_pred             HhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHh
Q 016715          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFE  210 (384)
Q Consensus       136 ~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~  210 (384)
                      .+...+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...   ++++++.+|+.+ +++        
T Consensus       164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p--------  233 (332)
T 3i53_A          164 KYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLP--------  233 (332)
T ss_dssp             SSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCC--------
T ss_pred             hCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCC--------
Confidence            334445689999999999999999986  458999999 99999999887532   589999999973 221        


Q ss_pred             hhccCCCcceEeeccCc-cccHH
Q 016715          211 RRKSSSGFAKVVANIPF-NISTD  232 (384)
Q Consensus       211 ~~~~~~~~d~Vv~NlPy-~i~~~  232 (384)
                           ..+|+|+++-.+ ++..+
T Consensus       234 -----~~~D~v~~~~vlh~~~~~  251 (332)
T 3i53_A          234 -----AGAGGYVLSAVLHDWDDL  251 (332)
T ss_dssp             -----CSCSEEEEESCGGGSCHH
T ss_pred             -----CCCcEEEEehhhccCCHH
Confidence                 268998875444 44443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.47  E-value=2.3e-07  Score=91.44  Aligned_cols=84  Identities=13%  Similarity=0.074  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--C-CcEEEEeCCHHHHHHHHHHhcCCC--C--eEEEEccccccch-hhhhhhHHhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHI-RSHMLSLFER  211 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~-~~V~avE~d~~~~~~a~~~~~~~~--~--v~~~~gD~~~~~~-~~~~~~~~~~  211 (384)
                      .++.+|||++||+|.++..++.+  | .+|+++|+++.+++.++++++.++  +  ++++++|+.++.. .         
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~---------  121 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE---------  121 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC---------
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh---------
Confidence            46789999999999999999985  5 489999999999999999987543  3  9999999977532 1         


Q ss_pred             hccCCCcceEeeccCccccHHHHH
Q 016715          212 RKSSSGFAKVVANIPFNISTDVIK  235 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i~~~il~  235 (384)
                        ....||+|+.|+ |....+++.
T Consensus       122 --~~~~fD~V~lDP-~g~~~~~l~  142 (392)
T 3axs_A          122 --WGFGFDYVDLDP-FGTPVPFIE  142 (392)
T ss_dssp             --CSSCEEEEEECC-SSCCHHHHH
T ss_pred             --hCCCCcEEEECC-CcCHHHHHH
Confidence              125799999997 554444443

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.45  E-value=1.3e-07  Score=87.59  Aligned_cols=85  Identities=12%  Similarity=0.172  Sum_probs=66.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~  206 (384)
                      ...+++.+  .+..+|||||||+|-++..++..  .++|+|+|+|+++++.++.++..++ +..+.+.|...-+.+    
T Consensus       123 Y~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~----  196 (281)
T 3lcv_B          123 YRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLD----  196 (281)
T ss_dssp             HHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCC----
T ss_pred             HHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCC----
Confidence            33444444  34679999999999999998876  4599999999999999999987543 688888998876543    


Q ss_pred             hHHhhhccCCCcceEeeccCccc
Q 016715          207 SLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                               +.+|+++++.-++.
T Consensus       197 ---------~~~DvaL~lkti~~  210 (281)
T 3lcv_B          197 ---------EPADVTLLLKTLPC  210 (281)
T ss_dssp             ---------SCCSEEEETTCHHH
T ss_pred             ---------CCcchHHHHHHHHH
Confidence                     57999999865533

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.43  E-value=3.7e-07  Score=85.74  Aligned_cols=91  Identities=15%  Similarity=0.184  Sum_probs=62.4

Q ss_pred             ccCCHHHHHHHHHHh-cCCCCCEEEEEcCcchH----HHHHHHHc-C-----CcEEEEeCCHHHHHHHHHHhc-------
Q 016715          123 YMLNSEINDQLAAAA-AVQEGDIVLEIGPGTGS----LTNVLLNA-G-----ATVLAIEKDQHMVGLVRERFA-------  184 (384)
Q Consensus       123 fl~~~~~~~~il~~l-~~~~~~~VLEIG~G~G~----lt~~La~~-~-----~~V~avE~d~~~~~~a~~~~~-------  184 (384)
                      |..++...+.+.+.+ +..++.+|||+|||||.    ++..|++. +     .+|+|+|+|+.|++.|++..-       
T Consensus        86 FfRd~~~f~~l~~~llp~~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~  165 (274)
T 1af7_A           86 FFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKT  165 (274)
T ss_dssp             TTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTT
T ss_pred             ccCChHHHHHHHHHccCCCCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhc
Confidence            444444444444332 11235699999999998    56666665 3     489999999999999998641       


Q ss_pred             -------------C---C----------CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715          185 -------------S---I----------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       185 -------------~---~----------~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                                   .   .          .+|.+.++|..+.+++.           .+.||+|++.
T Consensus       166 ~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~-----------~~~fDlI~cr  220 (274)
T 1af7_A          166 LSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNV-----------PGPFDAIFCR  220 (274)
T ss_dssp             SCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCC-----------CCCEEEEEEC
T ss_pred             CCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCc-----------CCCeeEEEEC
Confidence                         0   1          26899999998854421           1579999984

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.38  E-value=1.2e-06  Score=82.09  Aligned_cols=75  Identities=17%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHhcCC-CCCEEEEEcCcc--hHHHHHHHH-c--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcccc
Q 016715          126 NSEINDQLAAAAAVQ-EGDIVLEIGPGT--GSLTNVLLN-A--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV  197 (384)
Q Consensus       126 ~~~~~~~il~~l~~~-~~~~VLEIG~G~--G~lt~~La~-~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~  197 (384)
                      +.....+.+..+... ...+|||||||+  |..+..+++ .  +++|++||.|+.|++.+++++...  ++++++++|+.
T Consensus        62 nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~  141 (277)
T 3giw_A           62 NRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADML  141 (277)
T ss_dssp             HHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTT
T ss_pred             HHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEeccc
Confidence            445666777777533 447999999997  333444444 3  679999999999999999998753  37999999998


Q ss_pred             ccc
Q 016715          198 KCH  200 (384)
Q Consensus       198 ~~~  200 (384)
                      +.+
T Consensus       142 ~~~  144 (277)
T 3giw_A          142 DPA  144 (277)
T ss_dssp             CHH
T ss_pred             Chh
Confidence            864

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.36  E-value=9.9e-07  Score=86.68  Aligned_cols=85  Identities=14%  Similarity=0.114  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCc------chHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPG------TGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G------~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~  198 (384)
                      ...+++++.+.. ++.+|||||||      +|..+..+++.   +++|+|||+++.|.       ...++++++++|+.+
T Consensus       204 ~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~~~rI~fv~GDa~d  275 (419)
T 3sso_A          204 PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VDELRIRTIQGDQND  275 (419)
T ss_dssp             HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GCBTTEEEEECCTTC
T ss_pred             HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hcCCCcEEEEecccc
Confidence            567777776653 45799999999      77777777654   67999999999973       123689999999999


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      +++...+..      ..+.||+|+++..
T Consensus       276 lpf~~~l~~------~d~sFDlVisdgs  297 (419)
T 3sso_A          276 AEFLDRIAR------RYGPFDIVIDDGS  297 (419)
T ss_dssp             HHHHHHHHH------HHCCEEEEEECSC
T ss_pred             cchhhhhhc------ccCCccEEEECCc
Confidence            876521110      1268999999854

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.36  E-value=6.8e-07  Score=75.31  Aligned_cols=88  Identities=13%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcch-HHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTG-SLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G-~lt~~La~-~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (384)
                      +..+.+.|.+...  ++++|||||||.| ..+..|++ .|.+|+++|+++..++             +++.|+.+.....
T Consensus        22 ~e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------------~v~dDiF~P~~~~   86 (153)
T 2k4m_A           22 WNDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------------IVRDDITSPRMEI   86 (153)
T ss_dssp             HHHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------------EECCCSSSCCHHH
T ss_pred             HHHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------------eEEccCCCCcccc
Confidence            4556666665553  4579999999999 59999997 7999999999977655             8888988754421


Q ss_pred             hhhhHHhhhccCCCcceE-eeccCccccHHHHHHhcc
Q 016715          204 HMLSLFERRKSSSGFAKV-VANIPFNISTDVIKQLLP  239 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~V-v~NlPy~i~~~il~~L~~  239 (384)
                                 ...+|+| --|+|-.+..+++.--..
T Consensus        87 -----------Y~~~DLIYsirPP~El~~~i~~lA~~  112 (153)
T 2k4m_A           87 -----------YRGAALIYSIRPPAEIHSSLMRVADA  112 (153)
T ss_dssp             -----------HTTEEEEEEESCCTTTHHHHHHHHHH
T ss_pred             -----------cCCcCEEEEcCCCHHHHHHHHHHHHH
Confidence                       1478999 569999988888764433

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.35  E-value=2.7e-07  Score=82.49  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=55.6

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhH
Q 016715          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       130 ~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      .+.+++.+. ..++.+|||||||+|.++..+   +.+|+++|+++.             +++++.+|+.++++.+     
T Consensus        55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~-------------~~~~~~~d~~~~~~~~-----  113 (215)
T 2zfu_A           55 VDRIARDLRQRPASLVVADFGCGDCRLASSI---RNPVHCFDLASL-------------DPRVTVCDMAQVPLED-----  113 (215)
T ss_dssp             HHHHHHHHHTSCTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS-------------STTEEESCTTSCSCCT-----
T ss_pred             HHHHHHHHhccCCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC-------------CceEEEeccccCCCCC-----
Confidence            344555554 346789999999999999887   478999999977             5678899998876543     


Q ss_pred             HhhhccCCCcceEeeccCccc
Q 016715          209 FERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                             +.||+|+++..++.
T Consensus       114 -------~~fD~v~~~~~l~~  127 (215)
T 2zfu_A          114 -------ESVDVAVFCLSLMG  127 (215)
T ss_dssp             -------TCEEEEEEESCCCS
T ss_pred             -------CCEeEEEEehhccc
Confidence                   57999999876653

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.30  E-value=7.8e-07  Score=86.89  Aligned_cols=81  Identities=11%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       131 ~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      ..+++.+. ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .++++++.+|+.+ +++     
T Consensus       192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~p-----  260 (368)
T 3reo_A          192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----FSGVEHLGGDMFD-GVP-----  260 (368)
T ss_dssp             HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-CCC-----
T ss_pred             HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----cCCCEEEecCCCC-CCC-----
Confidence            34444444 556789999999999999999986  458999999 888877653    2689999999986 433     


Q ss_pred             HHhhhccCCCcceEeeccCc-cccH
Q 016715          208 LFERRKSSSGFAKVVANIPF-NIST  231 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy-~i~~  231 (384)
                              .. |+|+++..+ ++..
T Consensus       261 --------~~-D~v~~~~vlh~~~~  276 (368)
T 3reo_A          261 --------KG-DAIFIKWICHDWSD  276 (368)
T ss_dssp             --------CC-SEEEEESCGGGBCH
T ss_pred             --------CC-CEEEEechhhcCCH
Confidence                    22 888776554 3443

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.24  E-value=1.7e-06  Score=84.41  Aligned_cols=82  Identities=12%  Similarity=0.234  Sum_probs=61.6

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       130 ~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ...+++.+. ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .++++++.+|+.+ ++++   
T Consensus       189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~---  259 (364)
T 3p9c_A          189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----FPGVTHVGGDMFK-EVPS---  259 (364)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-CCCC---
T ss_pred             HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----cCCeEEEeCCcCC-CCCC---
Confidence            445666665 667789999999999999999986  458999999 888876653    2689999999987 5432   


Q ss_pred             hHHhhhccCCCcceEeeccCc-cccH
Q 016715          207 SLFERRKSSSGFAKVVANIPF-NIST  231 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy-~i~~  231 (384)
                                . |+|++.... ++..
T Consensus       260 ----------~-D~v~~~~vlh~~~d  274 (364)
T 3p9c_A          260 ----------G-DTILMKWILHDWSD  274 (364)
T ss_dssp             ----------C-SEEEEESCGGGSCH
T ss_pred             ----------C-CEEEehHHhccCCH
Confidence                      2 888765444 4444

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.23  E-value=2.5e-06  Score=76.36  Aligned_cols=71  Identities=21%  Similarity=0.351  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~-----~~v~~~~gD~~~  198 (384)
                      .++...+.+-..+  .+.++||||||  |+.|..+++. +.+|++||.|++..+.++++++..     ++++++.||+.+
T Consensus        16 v~~~~~~~L~~~l--~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           16 MPPAEAEALRMAY--EEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             SCHHHHHHHHHHH--HHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             CCHHHHHHHHHHh--hCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            4444444444433  35679999998  5899999886 689999999999999999988643     379999999876


Q ss_pred             c
Q 016715          199 C  199 (384)
Q Consensus       199 ~  199 (384)
                      .
T Consensus        92 ~   92 (202)
T 3cvo_A           92 T   92 (202)
T ss_dssp             B
T ss_pred             h
Confidence            4

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.20  E-value=1.7e-06  Score=81.90  Aligned_cols=64  Identities=17%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             cCCCCCEEEEEcC------cchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEE-EEccccccchhhhhhh
Q 016715          138 AVQEGDIVLEIGP------GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKV-LQEDFVKCHIRSHMLS  207 (384)
Q Consensus       138 ~~~~~~~VLEIG~------G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~-~~gD~~~~~~~~~~~~  207 (384)
                      .+.++++|||+||      |+|.  ..+++.   +.+|+|+|+++.        +   +++++ +++|+.+.++.     
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---~~v~~~i~gD~~~~~~~-----  121 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---SDADSTLIGDCATVHTA-----  121 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---CSSSEEEESCGGGCCCS-----
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---CCCEEEEECccccCCcc-----
Confidence            4668899999999      5577  444443   368999999988        1   37889 99999887542     


Q ss_pred             HHhhhccCCCcceEeeccCc
Q 016715          208 LFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy  227 (384)
                              +.||+|++|++.
T Consensus       122 --------~~fD~Vvsn~~~  133 (290)
T 2xyq_A          122 --------NKWDLIISDMYD  133 (290)
T ss_dssp             --------SCEEEEEECCCC
T ss_pred             --------CcccEEEEcCCc
Confidence                    479999999654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.18  E-value=2e-06  Score=83.28  Aligned_cols=71  Identities=13%  Similarity=0.303  Sum_probs=56.7

Q ss_pred             cCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          138 AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      ...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.    ++++++.+|+.+ ++              
T Consensus       185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~--------------  244 (352)
T 1fp2_A          185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----NNLTYVGGDMFT-SI--------------  244 (352)
T ss_dssp             HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----TTEEEEECCTTT-CC--------------
T ss_pred             ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----CCcEEEeccccC-CC--------------
Confidence            3456789999999999999999987  568999999 9998877642    469999999976 32              


Q ss_pred             CCcceEeeccCcc
Q 016715          216 SGFAKVVANIPFN  228 (384)
Q Consensus       216 ~~~d~Vv~NlPy~  228 (384)
                      +.+|+|+++..++
T Consensus       245 p~~D~v~~~~~lh  257 (352)
T 1fp2_A          245 PNADAVLLKYILH  257 (352)
T ss_dssp             CCCSEEEEESCGG
T ss_pred             CCccEEEeehhhc
Confidence            2489998865543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.14  E-value=4.6e-06  Score=79.01  Aligned_cols=60  Identities=28%  Similarity=0.364  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      ....+++.+++... .+++.|||+|||+|+++.+++..|.+++|+|+++.+++.+++++..
T Consensus       220 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          220 FPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             SCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            56789999999887 6789999999999999999999999999999999999999998753

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.13  E-value=3.8e-06  Score=81.96  Aligned_cols=78  Identities=5%  Similarity=0.158  Sum_probs=60.6

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       131 ~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      ..+++.+. ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++    .++++++.+|+.+ ++      
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~------  265 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----LSGIEHVGGDMFA-SV------  265 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-CC------
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh----cCCCEEEeCCccc-CC------
Confidence            45566654 5667899999999999999999884  47888899 999887664    2579999999987 43      


Q ss_pred             HHhhhccCCCcceEeeccCcc
Q 016715          208 LFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                              +.+|+|+++..++
T Consensus       266 --------~~~D~v~~~~~lh  278 (372)
T 1fp1_D          266 --------PQGDAMILKAVCH  278 (372)
T ss_dssp             --------CCEEEEEEESSGG
T ss_pred             --------CCCCEEEEecccc
Confidence                    2389998875553

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.09  E-value=2.1e-06  Score=82.96  Aligned_cols=84  Identities=21%  Similarity=0.333  Sum_probs=59.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc---CCCCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA---SIDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~---~~~~v~~~~gD~~~~~~~~~  204 (384)
                      ...+++.++..++.+|||||||+|.++..+++.  +.+++++|+ +.++.  +++..   ..++++++.+|+.+ ++   
T Consensus       173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~---  245 (348)
T 3lst_A          173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EV---  245 (348)
T ss_dssp             HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CC---
T ss_pred             HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CC---
Confidence            345667777778889999999999999999987  347899999 44444  32222   12479999999962 11   


Q ss_pred             hhhHHhhhccCCCcceEeeccCc-cccH
Q 016715          205 MLSLFERRKSSSGFAKVVANIPF-NIST  231 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy-~i~~  231 (384)
                                 +.+|+|+++..+ ++..
T Consensus       246 -----------p~~D~v~~~~vlh~~~d  262 (348)
T 3lst_A          246 -----------PHADVHVLKRILHNWGD  262 (348)
T ss_dssp             -----------CCCSEEEEESCGGGSCH
T ss_pred             -----------CCCcEEEEehhccCCCH
Confidence                       268998876554 3443

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.05  E-value=3.3e-06  Score=81.86  Aligned_cols=77  Identities=16%  Similarity=0.294  Sum_probs=58.8

Q ss_pred             HHHHHh--cCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          132 QLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       132 ~il~~l--~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .+++.+  ...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .++++++.+|+.+ ++      
T Consensus       182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~------  249 (358)
T 1zg3_A          182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK-SI------  249 (358)
T ss_dssp             HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT-CC------
T ss_pred             HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC-CC------
Confidence            344444  3346689999999999999999987  458999999 788876654    2579999999987 43      


Q ss_pred             HHhhhccCCCcceEeeccCcc
Q 016715          208 LFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                              +.+|+|+++..++
T Consensus       250 --------~~~D~v~~~~vlh  262 (358)
T 1zg3_A          250 --------PSADAVLLKWVLH  262 (358)
T ss_dssp             --------CCCSEEEEESCGG
T ss_pred             --------CCceEEEEccccc
Confidence                    2489998876654

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.97  E-value=8.3e-06  Score=79.18  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=59.3

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      +.+|.+|||+||++|..|..++++|.+|+|||+.+ |-..    +...++|+++++|+.......            +.+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~----l~~~~~V~~~~~d~~~~~~~~------------~~~  271 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQS----LMDTGQVTWLREDGFKFRPTR------------SNI  271 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHH----HHTTTCEEEECSCTTTCCCCS------------SCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChh----hccCCCeEEEeCccccccCCC------------CCc
Confidence            46899999999999999999999999999999752 2222    223479999999999876542            579


Q ss_pred             ceEeeccCccc
Q 016715          219 AKVVANIPFNI  229 (384)
Q Consensus       219 d~Vv~NlPy~i  229 (384)
                      |.|++++..+.
T Consensus       272 D~vvsDm~~~p  282 (375)
T 4auk_A          272 SWMVCDMVEKP  282 (375)
T ss_dssp             EEEEECCSSCH
T ss_pred             CEEEEcCCCCh
Confidence            99999976543

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.97  E-value=3.3e-05  Score=74.83  Aligned_cols=89  Identities=13%  Similarity=0.244  Sum_probs=65.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~  205 (384)
                      ...+++..+.....+|+|||||+|.++..++++  +.+++..|. +.+++.++++...  .++++++.+|+.+.+.    
T Consensus       168 ~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~----  242 (353)
T 4a6d_A          168 GRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL----  242 (353)
T ss_dssp             HHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC----
T ss_pred             HHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC----
Confidence            345556566667789999999999999999998  447777776 8899999988753  3589999999986543    


Q ss_pred             hhHHhhhccCCCcceEee-ccCccccHHH
Q 016715          206 LSLFERRKSSSGFAKVVA-NIPFNISTDV  233 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~-NlPy~i~~~i  233 (384)
                                +..|+++. +.-.++..+-
T Consensus       243 ----------~~~D~~~~~~vlh~~~d~~  261 (353)
T 4a6d_A          243 ----------PEADLYILARVLHDWADGK  261 (353)
T ss_dssp             ----------CCCSEEEEESSGGGSCHHH
T ss_pred             ----------CCceEEEeeeecccCCHHH
Confidence                      34576654 4444555543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.95  E-value=8.9e-07  Score=82.90  Aligned_cols=82  Identities=10%  Similarity=-0.015  Sum_probs=66.5

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      .+..+||+.+|||.++..+++.+.+++.+|.++..++.+++++...++++++++|+...-...     .   .....+|+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l-----~---~~~~~fdL  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNAL-----L---PPPEKRGL  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHH-----C---SCTTSCEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHh-----c---CCCCCccE
Confidence            355689999999999999999778999999999999999999977668999999987642110     0   01236999


Q ss_pred             EeeccCcccc
Q 016715          221 VVANIPFNIS  230 (384)
Q Consensus       221 Vv~NlPy~i~  230 (384)
                      |+.++||...
T Consensus       163 VfiDPPYe~k  172 (283)
T 2oo3_A          163 IFIDPSYERK  172 (283)
T ss_dssp             EEECCCCCST
T ss_pred             EEECCCCCCC
Confidence            9999999853

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.93  E-value=2.8e-05  Score=74.38  Aligned_cols=93  Identities=13%  Similarity=0.282  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~  203 (384)
                      |-+++.+++.+.+.+|+.++|..||.|..|..+++. +  .+|+|+|.|+.+++.++ ++. .++++++++++.++... 
T Consensus        43 pVLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~-~~Rv~lv~~nF~~l~~~-  119 (347)
T 3tka_A           43 TVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID-DPRFSIIHGPFSALGEY-  119 (347)
T ss_dssp             CTTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC-CTTEEEEESCGGGHHHH-
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc-CCcEEEEeCCHHHHHHH-
Confidence            457788999999999999999999999999999987 3  48999999999999985 553 36899999999887521 


Q ss_pred             hhhhHHhhhccCCCcceEeeccCc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                           +......+.+|.|+.|+.+
T Consensus       120 -----L~~~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          120 -----VAERDLIGKIDGILLDLGV  138 (347)
T ss_dssp             -----HHHTTCTTCEEEEEEECSC
T ss_pred             -----HHhcCCCCcccEEEECCcc
Confidence                 1100011258999999875

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.90  E-value=8.7e-06  Score=84.56  Aligned_cols=69  Identities=20%  Similarity=0.303  Sum_probs=51.0

Q ss_pred             CCEEEEEcCcchHHHHHHHH---c-CC--cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhh
Q 016715          142 GDIVLEIGPGTGSLTNVLLN---A-GA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~---~-~~--~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      +..|||||||+|-|....++   . +.  +|+|||.++ ++..+++....+   +.|++++||+.++.++          
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----------  426 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP----------  426 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS----------
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC----------
Confidence            35799999999999544443   3 22  689999997 455555554322   4899999999999765          


Q ss_pred             ccCCCcceEeec
Q 016715          213 KSSSGFAKVVAN  224 (384)
Q Consensus       213 ~~~~~~d~Vv~N  224 (384)
                         .+.|+||+-
T Consensus       427 ---EKVDIIVSE  435 (637)
T 4gqb_A          427 ---EKADIIVSE  435 (637)
T ss_dssp             ---SCEEEEECC
T ss_pred             ---cccCEEEEE
Confidence               478999974

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.88  E-value=6.6e-06  Score=71.09  Aligned_cols=83  Identities=14%  Similarity=0.217  Sum_probs=59.3

Q ss_pred             hcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ++..+|++|||||||.              +++|+++.|++.|+++...  +++++++|+.++++..         ...+
T Consensus         8 ~g~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~--~~~~~~~d~~~~~~~~---------~~~~   62 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN--EGRVSVENIKQLLQSA---------HKES   62 (176)
T ss_dssp             TTCCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT--TSEEEEEEGGGGGGGC---------CCSS
T ss_pred             cCCCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc--CcEEEEechhcCcccc---------CCCC
Confidence            4567899999999996              2399999999999998743  5999999999887510         0126


Q ss_pred             CcceEeeccCcccc--------HHHHHHhcccCCCe
Q 016715          217 GFAKVVANIPFNIS--------TDVIKQLLPMGDIF  244 (384)
Q Consensus       217 ~~d~Vv~NlPy~i~--------~~il~~L~~~g~~~  244 (384)
                      .||.|+++..++..        ..+.+.|+++|.++
T Consensus        63 ~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~   98 (176)
T 2ld4_A           63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLF   98 (176)
T ss_dssp             CEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEE
T ss_pred             CEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEE
Confidence            79999997655432        23344555555543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.81  E-value=4.5e-05  Score=70.72  Aligned_cols=61  Identities=15%  Similarity=0.221  Sum_probs=55.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      ..+..+++.+++... .+++.|||.+||+|+.+.++.+.|.+++|+|+++.+++.+++++..
T Consensus       196 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh
Confidence            356789999998875 6789999999999999999999999999999999999999998854

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.77  E-value=2.5e-05  Score=81.44  Aligned_cols=96  Identities=11%  Similarity=0.183  Sum_probs=63.1

Q ss_pred             CCEEEEEcCcchHHHHHHHH----cC-----------CcEEEEeCCHHHHHHHHHHhc-CC-CCeEEEEccccccchhhh
Q 016715          142 GDIVLEIGPGTGSLTNVLLN----AG-----------ATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~----~~-----------~~V~avE~d~~~~~~a~~~~~-~~-~~v~~~~gD~~~~~~~~~  204 (384)
                      +..|||||||+|.|....+.    .+           .+|+|||.++.++..++.... .. +.|+++++|+.++.++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            45899999999999743221    12           289999999987776666544 22 479999999999876310


Q ss_pred             hhhHHhhhccCCCcceEeeccC-----ccccHHHHH----HhcccCCCe
Q 016715          205 MLSLFERRKSSSGFAKVVANIP-----FNISTDVIK----QLLPMGDIF  244 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlP-----y~i~~~il~----~L~~~g~~~  244 (384)
                      -       ......|+||+-+-     +....+.+.    .|+++|.++
T Consensus       490 ~-------~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          490 D-------RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             H-------TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             c-------CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            0       01257899998642     234444543    455555444

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.76  E-value=0.00018  Score=67.78  Aligned_cols=91  Identities=18%  Similarity=0.264  Sum_probs=69.5

Q ss_pred             CCHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc-------CCCCeEEE
Q 016715          125 LNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA-------SIDQLKVL  192 (384)
Q Consensus       125 ~~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~-------~~~~v~~~  192 (384)
                      .|+.....++....   ....++||-||-|.|...+.+++.  ..+|+.||+|+.+++.+++.+.       ..++++++
T Consensus        64 ~De~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~  143 (294)
T 3o4f_A           64 RDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLV  143 (294)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE
T ss_pred             ccHHHHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEE
Confidence            34555555554432   234579999999999999999987  3589999999999999998752       24699999


Q ss_pred             EccccccchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      .+|+.++--.           ..+.||+||.+++
T Consensus       144 ~~Dg~~~l~~-----------~~~~yDvIi~D~~  166 (294)
T 3o4f_A          144 IDDGVNFVNQ-----------TSQTFDVIISDCT  166 (294)
T ss_dssp             ESCTTTTTSC-----------SSCCEEEEEESCC
T ss_pred             echHHHHHhh-----------ccccCCEEEEeCC
Confidence            9999886422           2467999998764

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.49  E-value=0.00016  Score=70.18  Aligned_cols=96  Identities=23%  Similarity=0.291  Sum_probs=73.8

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcC--------CCCeEE
Q 016715          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFAS--------IDQLKV  191 (384)
Q Consensus       122 ~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~--------~~~v~~  191 (384)
                      .|..+...-...+..+++++|++|||+.+|.|.=|..|++.+.  .|+|+|+++.-+..+++++..        ..++.+
T Consensus       129 d~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v  208 (359)
T 4fzv_A          129 EYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRV  208 (359)
T ss_dssp             SEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEE
T ss_pred             chhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEE
Confidence            3433333344555667899999999999999999999998854  799999999999888887642        137899


Q ss_pred             EEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       192 ~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ...|+..++..           ..+.||.|+.+.|=.
T Consensus       209 ~~~D~~~~~~~-----------~~~~fD~VLlDaPCS  234 (359)
T 4fzv_A          209 TSWDGRKWGEL-----------EGDTYDRVLVDVPCT  234 (359)
T ss_dssp             ECCCGGGHHHH-----------STTCEEEEEEECCCC
T ss_pred             EeCchhhcchh-----------ccccCCEEEECCccC
Confidence            99998876532           236799999998853

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.38  E-value=0.00057  Score=65.54  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=58.9

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      +.+++|+.||.|.++..+...|.+ |.++|+|+.+++..+.++....     ++|+.++...+           .+.+|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~-----~~Di~~~~~~~-----------~~~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP-----EGDITQVNEKT-----------IPDHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC-----BSCGGGSCGGG-----------SCCCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC-----cCCHHHcCHhh-----------CCCCCE
Confidence            468999999999999999999885 7799999999999999875321     68988876542           246899


Q ss_pred             EeeccCccc
Q 016715          221 VVANIPFNI  229 (384)
Q Consensus       221 Vv~NlPy~i  229 (384)
                      |++++|.+-
T Consensus        75 l~~gpPCQ~   83 (327)
T 2c7p_A           75 LCAGFPCQA   83 (327)
T ss_dssp             EEEECCCTT
T ss_pred             EEECCCCCC
Confidence            999998743

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.38  E-value=9.5e-05  Score=68.57  Aligned_cols=78  Identities=17%  Similarity=0.028  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-------C-------CcEEEEeCCH---H-----------HHHHHHHHhcC-------
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-------G-------ATVLAIEKDQ---H-----------MVGLVRERFAS-------  185 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-------~-------~~V~avE~d~---~-----------~~~~a~~~~~~-------  185 (384)
                      ++.+|||||+|+|+.+..+++.       +       .+++++|.++   +           +.+.+++.+..       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999999887653       1       3899999887   3           33345554432       


Q ss_pred             -------C--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeecc
Q 016715          186 -------I--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       186 -------~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                             .  .+++++.||+.+.-....     .  .....+|.|+.+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~-----~--~~~~~~D~iflD~  181 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLD-----D--SLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSC-----G--GGTTCEEEEEECS
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcc-----c--ccCCeEEEEEECC
Confidence                   1  267899999988421100     0  0013699999873

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.36  E-value=0.00047  Score=67.42  Aligned_cols=77  Identities=22%  Similarity=0.214  Sum_probs=61.1

Q ss_pred             CEEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      .+|+|+.||.|.++..+.+.|.+ |.++|+|+.+++..+.++   ++..++++|+.++...+.....    .....+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~---~~~~~~~~DI~~~~~~~~~~~~----~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF---PRSLHVQEDVSLLNAEIIKGFF----KNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC---TTSEEECCCGGGCCHHHHHHHH----CSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC---CCCceEecChhhcCHHHHHhhc----ccCCCeeEE
Confidence            47999999999999999999986 569999999999988876   4678899999988754321000    012578999


Q ss_pred             eeccC
Q 016715          222 VANIP  226 (384)
Q Consensus       222 v~NlP  226 (384)
                      ++.+|
T Consensus        76 ~ggpP   80 (376)
T 3g7u_A           76 IGGPP   80 (376)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            99998

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.28  E-value=0.00037  Score=67.24  Aligned_cols=73  Identities=19%  Similarity=0.258  Sum_probs=58.9

Q ss_pred             CEEEEEcCcchHHHHHHHHcC--C-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          143 DIVLEIGPGTGSLTNVLLNAG--A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~--~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .+|+|+.||.|.++..+...|  . .|+++|+|+.+++..+.++.   +..++++|+.++...+.    .     ...+|
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---~~~~~~~Di~~~~~~~~----~-----~~~~D   70 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---HTQLLAKTIEGITLEEF----D-----RLSFD   70 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECSCGGGCCHHHH----H-----HHCCS
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---ccccccCCHHHccHhHc----C-----cCCcC
Confidence            479999999999999999988  3 58999999999999999873   45688999998764321    0     02589


Q ss_pred             eEeeccCc
Q 016715          220 KVVANIPF  227 (384)
Q Consensus       220 ~Vv~NlPy  227 (384)
                      +|++++|.
T Consensus        71 ~l~~gpPC   78 (343)
T 1g55_A           71 MILMSPPC   78 (343)
T ss_dssp             EEEECCC-
T ss_pred             EEEEcCCC
Confidence            99999993

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.04  E-value=0.00028  Score=67.51  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=60.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~  199 (384)
                      ..+..+++.+++... .+|+.|||..||+|+.+.+..+.|.+.+|+|+++.+++.+++++.... ....+.+|+.++
T Consensus       236 ~kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i  311 (323)
T 1boo_A          236 RFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRI  311 (323)
T ss_dssp             CCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            356789999998764 678999999999999999999999999999999999999999986432 233444444443

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.02  E-value=0.0013  Score=63.91  Aligned_cols=77  Identities=25%  Similarity=0.323  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC----------CCCeEEEEccccccchhhhhhhHH
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~----------~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      +.++||-||-|.|...+++++. ..+|+.||+|+.+++.+++.+..          .++++++.+|+.++--..     .
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~-----~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY-----A  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH-----H
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhh-----h
Confidence            4679999999999999999987 45899999999999999987531          136899999998753210     0


Q ss_pred             hhhccCCCcceEeecc
Q 016715          210 ERRKSSSGFAKVVANI  225 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~Nl  225 (384)
                         .....||+||.++
T Consensus       280 ---~~~~~yDvIIvDl  292 (381)
T 3c6k_A          280 ---KEGREFDYVINDL  292 (381)
T ss_dssp             ---HHTCCEEEEEEEC
T ss_pred             ---hccCceeEEEECC
Confidence               0235799999885

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.98  E-value=0.00039  Score=63.00  Aligned_cols=90  Identities=11%  Similarity=0.066  Sum_probs=61.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHH--HHHHhcCCCCeEEEEc-cccccchhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGL--VRERFASIDQLKVLQE-DFVKCHIRS  203 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~--a~~~~~~~~~v~~~~g-D~~~~~~~~  203 (384)
                      -+..|.+...+.++..|||+||++|..+.+++.. ++ +|+|+|+-..-.+.  ..+.+ ..+.+++..+ |+..++.  
T Consensus        66 KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~-gwn~v~fk~gvDv~~~~~--  142 (267)
T 3p8z_A           66 KLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTY-GWNIVKLMSGKDVFYLPP--  142 (267)
T ss_dssp             HHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCT-TTTSEEEECSCCGGGCCC--
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhc-CcCceEEEeccceeecCC--
Confidence            3456666666788999999999999999988876 44 79999986543210  00000 1357899999 9866542  


Q ss_pred             hhhhHHhhhccCCCcceEeeccCccccHHH
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~i  233 (384)
                                  .++|.|++++.-.-+.+.
T Consensus       143 ------------~~~DtllcDIgeSs~~~~  160 (267)
T 3p8z_A          143 ------------EKCDTLLCDIGESSPSPT  160 (267)
T ss_dssp             ------------CCCSEEEECCCCCCSCHH
T ss_pred             ------------ccccEEEEecCCCCCChh
Confidence                        468999999754333333

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.93  E-value=0.00026  Score=65.75  Aligned_cols=87  Identities=8%  Similarity=-0.017  Sum_probs=54.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      +..|.+...+.++.+|||+|||+|..+..++++ +. .|+|+|+..++............++..+.+|+....+.     
T Consensus        63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~-----  137 (277)
T 3evf_A           63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLE-----  137 (277)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSC-----
T ss_pred             HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcC-----
Confidence            344445545667889999999999999998876 44 78888887443111000000001555566665433322     


Q ss_pred             HHhhhccCCCcceEeeccCcc
Q 016715          208 LFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                             ...+|+|++++..+
T Consensus       138 -------~~~~DlVlsD~apn  151 (277)
T 3evf_A          138 -------PVKCDTLLCDIGES  151 (277)
T ss_dssp             -------CCCCSEEEECCCCC
T ss_pred             -------CCCccEEEecCccC
Confidence                   35799999997665

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=96.90  E-value=0.00043  Score=64.45  Aligned_cols=87  Identities=13%  Similarity=0.037  Sum_probs=53.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      +..|.+...+.++.+|||+|||+|..+..+++. +. .|+|+|+...+...+........++.....++....+      
T Consensus        79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l------  152 (282)
T 3gcz_A           79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNM------  152 (282)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGS------
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhc------
Confidence            344555555678889999999999999998865 43 7999998765322111100001133333333222111      


Q ss_pred             HHhhhccCCCcceEeeccCcc
Q 016715          208 LFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                            ....+|+|++++..+
T Consensus       153 ------~~~~~DvVLSDmApn  167 (282)
T 3gcz_A          153 ------EVIPGDTLLCDIGES  167 (282)
T ss_dssp             ------CCCCCSEEEECCCCC
T ss_pred             ------CCCCcCEEEecCccC
Confidence                  236799999998766

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.82  E-value=0.0043  Score=58.49  Aligned_cols=76  Identities=18%  Similarity=0.104  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcE---EEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATV---LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V---~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      ..-+++|+.||.|.++..+.+.|.++   .++|+|+..++..+.+.   ++..++.+|+.++...+.    .    ..+.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~---~~~~~~~~DI~~i~~~~i----~----~~~~   83 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH---QGKIMYVGDVRSVTQKHI----Q----EWGP   83 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT---TTCEEEECCGGGCCHHHH----H----HTCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC---CCCceeCCChHHccHHHh----c----ccCC
Confidence            45689999999999999999988754   89999999998888775   455788999999875431    1    1146


Q ss_pred             cceEeeccCc
Q 016715          218 FAKVVANIPF  227 (384)
Q Consensus       218 ~d~Vv~NlPy  227 (384)
                      +|++++.+|-
T Consensus        84 ~Dll~ggpPC   93 (295)
T 2qrv_A           84 FDLVIGGSPC   93 (295)
T ss_dssp             CSEEEECCCC
T ss_pred             cCEEEecCCC
Confidence            8999998875

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.74  E-value=0.0031  Score=59.99  Aligned_cols=69  Identities=17%  Similarity=0.206  Sum_probs=57.3

Q ss_pred             EEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEe
Q 016715          144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv  222 (384)
                      +|+|+.||.|.++..+.+.|.+ |.++|+|+.+++..+.+..    -.++.+|+.+++..+           .+..|+++
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----~~~~~~DI~~i~~~~-----------~~~~D~l~   66 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDE-----------FPKCDGII   66 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----SEEEESCGGGCCGGG-----------SCCCSEEE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCcccCChhhCCHhh-----------CCcccEEE
Confidence            6999999999999999888886 5599999999998888863    367899999887543           25689999


Q ss_pred             eccCc
Q 016715          223 ANIPF  227 (384)
Q Consensus       223 ~NlPy  227 (384)
                      +.+|=
T Consensus        67 ggpPC   71 (331)
T 3ubt_Y           67 GGPPS   71 (331)
T ss_dssp             CCCCG
T ss_pred             ecCCC
Confidence            98873

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.70  E-value=0.0028  Score=60.51  Aligned_cols=61  Identities=15%  Similarity=0.226  Sum_probs=54.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCH---HHHHHHHHHhcC
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ---HMVGLVRERFAS  185 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~---~~~~~a~~~~~~  185 (384)
                      ..+..+++.++.... .+|+.|||..||+|+.+.+....|.+.+|+|+++   .+++.+++++..
T Consensus       226 ~kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          226 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHH
Confidence            467899999998775 5789999999999999999999999999999999   999999998764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.56  E-value=0.0013  Score=61.59  Aligned_cols=84  Identities=11%  Similarity=0.061  Sum_probs=57.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHH--HHHHhcCCCCeEEEEc-cccccchhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGL--VRERFASIDQLKVLQE-DFVKCHIRS  203 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~--a~~~~~~~~~v~~~~g-D~~~~~~~~  203 (384)
                      -+..|.+...+.+++.|||+||++|..+.+++.. ++ .|+|+|+-..-.+.  ..+.+ ..+.|.++.+ |+..++.  
T Consensus        82 KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql-~w~lV~~~~~~Dv~~l~~--  158 (321)
T 3lkz_A           82 KLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSY-GWNIVTMKSGVDVFYRPS--  158 (321)
T ss_dssp             HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBT-TGGGEEEECSCCTTSSCC--
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhc-CCcceEEEeccCHhhCCC--
Confidence            3556666666778899999999999999988776 54 79999986542110  00011 1124778887 8766542  


Q ss_pred             hhhhHHhhhccCCCcceEeeccCc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                  ..+|.|++++.-
T Consensus       159 ------------~~~D~ivcDige  170 (321)
T 3lkz_A          159 ------------ECCDTLLCDIGE  170 (321)
T ss_dssp             ------------CCCSEEEECCCC
T ss_pred             ------------CCCCEEEEECcc
Confidence                        358999998763

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.53  E-value=0.0056  Score=58.56  Aligned_cols=72  Identities=14%  Similarity=0.135  Sum_probs=57.6

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCC--c-E-EEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGA--T-V-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~--~-V-~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .-+++|+.||.|.++..+.+.|.  + | .++|+|+.+++..+.++..   . ++++|+.++...+.    .     ...
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---~-~~~~DI~~~~~~~i----~-----~~~   76 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---E-VQVKNLDSISIKQI----E-----SLN   76 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---C-CBCCCTTTCCHHHH----H-----HTC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---C-cccCChhhcCHHHh----c-----cCC
Confidence            35899999999999999999873  5 5 6999999999999988743   2 67899998875431    1     126


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      +|++++.+|
T Consensus        77 ~Dil~ggpP   85 (327)
T 3qv2_A           77 CNTWFMSPP   85 (327)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEecCC
Confidence            899999988

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.52  E-value=0.0052  Score=58.94  Aligned_cols=72  Identities=14%  Similarity=0.242  Sum_probs=57.5

Q ss_pred             CEEEEEcCcchHHHHHHHHcCC--c-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          143 DIVLEIGPGTGSLTNVLLNAGA--T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~--~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      -+++|+.||.|.++..+.+.|.  + |.++|+|+.+++..+.++   +...++++|+.++...+.    .     ...+|
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~---~~~~~~~~DI~~~~~~~~----~-----~~~~D   71 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF---PETNLLNRNIQQLTPQVI----K-----KWNVD   71 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECCCGGGCCHHHH----H-----HTTCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC---CCCceeccccccCCHHHh----c-----cCCCC
Confidence            3799999999999999998874  4 779999999999988886   345678899998875431    1     12579


Q ss_pred             eEeeccC
Q 016715          220 KVVANIP  226 (384)
Q Consensus       220 ~Vv~NlP  226 (384)
                      ++++.+|
T Consensus        72 ~l~ggpP   78 (333)
T 4h0n_A           72 TILMSPP   78 (333)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9998877

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.26  E-value=0.0064  Score=59.95  Aligned_cols=59  Identities=14%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             CCCCCEEEEEcCcchHHHHHHH-HcC---CcEEEEeCCHHHHHHHHHHhcC-----C-CCeEEEEcccc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLL-NAG---ATVLAIEKDQHMVGLVRERFAS-----I-DQLKVLQEDFV  197 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La-~~~---~~V~avE~d~~~~~~a~~~~~~-----~-~~v~~~~gD~~  197 (384)
                      +.+++.|+||||+.|..+..++ ..+   .+|+++|.++...+.+++++..     . +++++++.-+-
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            4688999999999999999888 442   5899999999999999998865     3 57777665443

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.17  E-value=0.007  Score=60.91  Aligned_cols=83  Identities=13%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             CEEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-------hhhHHhhhcc
Q 016715          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-------MLSLFERRKS  214 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-------~~~~~~~~~~  214 (384)
                      -+++|+.||.|.++..+.+.|.+ |.++|+|+.+++..+.++...++..++++|+.++...+.       ....+.  ..
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~--~~  166 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIR--QH  166 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH--HH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhh--hc
Confidence            48999999999999999988875 789999999999988887544566788899988753210       000000  02


Q ss_pred             CCCcceEeeccCc
Q 016715          215 SSGFAKVVANIPF  227 (384)
Q Consensus       215 ~~~~d~Vv~NlPy  227 (384)
                      .+.+|++++.+|=
T Consensus       167 ~~~~Dvl~gGpPC  179 (482)
T 3me5_A          167 IPEHDVLLAGFPC  179 (482)
T ss_dssp             SCCCSEEEEECCC
T ss_pred             CCCCCEEEecCCC
Confidence            2568999998873

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.06  E-value=0.016  Score=54.16  Aligned_cols=76  Identities=17%  Similarity=0.103  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc-------CCcEEEEeCCHH--------------------------HHHHHHHHhcCC-
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA-------GATVLAIEKDQH--------------------------MVGLVRERFASI-  186 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~-------~~~V~avE~d~~--------------------------~~~~a~~~~~~~-  186 (384)
                      ....|||||+..|+.+..++..       +.+|+++|..+.                          .++.++++++.. 
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            3469999999999999888753       568999996421                          356677776532 


Q ss_pred             ---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          187 ---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       187 ---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                         ++++++.||+.+.-...          ....+|.|+.+.-
T Consensus       186 l~~~~I~li~Gda~etL~~~----------~~~~~d~vfIDaD  218 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTA----------PIDTLAVLRMDGD  218 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTC----------CCCCEEEEEECCC
T ss_pred             CCcCceEEEEeCHHHHHhhC----------CCCCEEEEEEcCC
Confidence               58999999998753221          1256888886653

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.47  E-value=0.037  Score=53.83  Aligned_cols=78  Identities=10%  Similarity=0.112  Sum_probs=47.7

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc----CCCCeEEEEccccccchhhhhhhHHhh------
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA----SIDQLKVLQEDFVKCHIRSHMLSLFER------  211 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~----~~~~v~~~~gD~~~~~~~~~~~~~~~~------  211 (384)
                      ..+|+|+|||+|..|..+...            +++.++++..    ..+.+++...|...-+|..+|..+...      
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~------------ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~  120 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDF------------IVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM  120 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHH------------HHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--
T ss_pred             ceEEEecCCCCChhHHHHHHH------------HHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcch
Confidence            468999999999999988654            3333333321    123566666665555543322221110      


Q ss_pred             --------------------h----ccCCCcceEeeccCccccH
Q 016715          212 --------------------R----KSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       212 --------------------~----~~~~~~d~Vv~NlPy~i~~  231 (384)
                                          +    ...+.+|.|++|..+||.+
T Consensus       121 ~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls  164 (374)
T 3b5i_A          121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLS  164 (374)
T ss_dssp             CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred             hhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeec
Confidence                                0    1136799999999888865

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=95.21  E-value=0.01  Score=55.49  Aligned_cols=44  Identities=16%  Similarity=0.143  Sum_probs=33.5

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHH
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQH  174 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~  174 (384)
                      ..|.+.--..++.+|||+||++|..+..++++ +. .|+|+|+...
T Consensus        71 ~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           71 RWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             HHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             HHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            34444422457889999999999999999986 43 7999998643

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.19  E-value=0.012  Score=53.95  Aligned_cols=81  Identities=15%  Similarity=0.012  Sum_probs=48.9

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCe---EEEEc-cccccchhh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQL---KVLQE-DFVKCHIRS  203 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v---~~~~g-D~~~~~~~~  203 (384)
                      .+|-+..-++++.+|||+||+.|..+..++++  ...|.|..+..+. . .. -.... .++   ++++| |+.+++   
T Consensus        63 ~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~-P~~~~~~Gv~~i~~~~G~Df~~~~---  136 (269)
T 2px2_A           63 RWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EE-PMLMQSYGWNIVTMKSGVDVFYKP---  136 (269)
T ss_dssp             HHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CC-CCCCCSTTGGGEEEECSCCGGGSC---
T ss_pred             HHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cC-CCcccCCCceEEEeeccCCccCCC---
Confidence            34444434568999999999999999999987  2233444333221 0 00 00001 233   55557 988743   


Q ss_pred             hhhhHHhhhccCCCcceEeeccCcc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                                 ...+|+|+|++.-+
T Consensus       137 -----------~~~~DvVLSDMAPn  150 (269)
T 2px2_A          137 -----------SEISDTLLCDIGES  150 (269)
T ss_dssp             -----------CCCCSEEEECCCCC
T ss_pred             -----------CCCCCEEEeCCCCC
Confidence                       24789999997544

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.95  E-value=0.12  Score=50.40  Aligned_cols=50  Identities=24%  Similarity=0.322  Sum_probs=38.4

Q ss_pred             CEEEEEcCcchHHHHHHHHc---------CCcEEEEeCCHHHHHHHHHHhcCCCCeEEE
Q 016715          143 DIVLEIGPGTGSLTNVLLNA---------GATVLAIEKDQHMVGLVRERFASIDQLKVL  192 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~---------~~~V~avE~d~~~~~~a~~~~~~~~~v~~~  192 (384)
                      -.|+|+|+|.|.+..-+++.         ..+++.||+|+.+.+.-++++...+++.+.
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~  140 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH  140 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEe
Confidence            47999999999998877642         227999999999998777776544456654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.38  E-value=0.23  Score=38.50  Aligned_cols=85  Identities=15%  Similarity=0.190  Sum_probs=58.1

Q ss_pred             CCEEEEEcCcchHHHHHH----HHcC-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTGSLTNVL----LNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~L----a~~~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +.+|+=+|+  |.++..+    .+.| .+|+++|.++.-.+.+.     ..++.++.+|..+...-.   ..      ..
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-----~~~~~~~~~d~~~~~~~~---~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-----RMGVATKQVDAKDEAGLA---KA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-----TTTCEEEECCTTCHHHHH---HH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----hCCCcEEEecCCCHHHHH---HH------Hc
Confidence            468999998  4454444    3457 78999999988776665     136778888876532111   11      14


Q ss_pred             CcceEeeccCccccHHHHHHhcccCC
Q 016715          217 GFAKVVANIPFNISTDVIKQLLPMGD  242 (384)
Q Consensus       217 ~~d~Vv~NlPy~i~~~il~~L~~~g~  242 (384)
                      ..|.||.+.|+....++.......+.
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~~~~~g~   94 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAKAAKAAGA   94 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCchhhHHHHHHHHHhCC
Confidence            67999999998888888777766553

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=94.11  E-value=0.051  Score=52.99  Aligned_cols=21  Identities=19%  Similarity=0.071  Sum_probs=18.4

Q ss_pred             CCEEEEEcCcchHHHHHHHHc
Q 016715          142 GDIVLEIGPGTGSLTNVLLNA  162 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~  162 (384)
                      .-+|+|+|||+|..|..+...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~   73 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRD   73 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHH
Confidence            468999999999999988765

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=92.96  E-value=0.17  Score=55.08  Aligned_cols=55  Identities=24%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCC-c-EEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGA-T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~-~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~  199 (384)
                      .-+++|+.||.|.++..+.+.|. + |.|+|+|+.+++..+.+.   ++..++.+|+.++
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~---p~~~~~~~DI~~l  596 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN---PGSTVFTEDCNIL  596 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC---TTSEEECSCHHHH
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC---CCCccccccHHHH
Confidence            34899999999999999998886 4 679999999999888775   5667888887543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=92.68  E-value=0.25  Score=42.64  Aligned_cols=45  Identities=16%  Similarity=0.248  Sum_probs=34.7

Q ss_pred             hcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715          137 AAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       137 l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~  181 (384)
                      ..+.++++||.+|+  |.|..+..++.. |++|++++.+++..+.+++
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            45678899999994  557776666654 8999999999887776653

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=92.61  E-value=0.15  Score=50.06  Aligned_cols=43  Identities=19%  Similarity=-0.038  Sum_probs=36.6

Q ss_pred             CEEEEEcCcchHHHHHHHHcCC---c----EEEEeCCHHHHHHHHHHhcC
Q 016715          143 DIVLEIGPGTGSLTNVLLNAGA---T----VLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~---~----V~avE~d~~~~~~a~~~~~~  185 (384)
                      -+|+|+.||.|.+...+.+.|.   -    |.++|+|+.+++..+.+...
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            4899999999999999988763   2    67899999999988888753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=92.53  E-value=0.31  Score=46.30  Aligned_cols=90  Identities=23%  Similarity=0.240  Sum_probs=59.0

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHh
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~  210 (384)
                      .+....+.+|++||-+|+|. |.++..+++. |++|++++.+++-.+.+++.    +--.++ .|...+           
T Consensus       168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~~v~-~~~~~~-----------  231 (348)
T 3two_A          168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM----GVKHFY-TDPKQC-----------  231 (348)
T ss_dssp             HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT----TCSEEE-SSGGGC-----------
T ss_pred             HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----CCCeec-CCHHHH-----------
Confidence            34455778899999999986 7888777775 88999999998888888763    211233 332211           


Q ss_pred             hhccCCCcceEeeccCcc-ccHHHHHHhcccCC
Q 016715          211 RRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGD  242 (384)
Q Consensus       211 ~~~~~~~~d~Vv~NlPy~-i~~~il~~L~~~g~  242 (384)
                          ...+|+|+-+..-. .....+..+.++|.
T Consensus       232 ----~~~~D~vid~~g~~~~~~~~~~~l~~~G~  260 (348)
T 3two_A          232 ----KEELDFIISTIPTHYDLKDYLKLLTYNGD  260 (348)
T ss_dssp             ----CSCEEEEEECCCSCCCHHHHHTTEEEEEE
T ss_pred             ----hcCCCEEEECCCcHHHHHHHHHHHhcCCE
Confidence                13688888665543 44455555555543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.42  E-value=1.2  Score=36.21  Aligned_cols=74  Identities=23%  Similarity=0.282  Sum_probs=49.8

Q ss_pred             CCEEEEEcCcc-hHHH-HHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          142 GDIVLEIGPGT-GSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       142 ~~~VLEIG~G~-G~lt-~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .++|+=+|||. |... ..|.+.|.+|+++|.|++.++.+++.     ++.++.||+.+...-..        ......|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-----g~~~i~gd~~~~~~l~~--------a~i~~ad   73 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-----GVRAVLGNAANEEIMQL--------AHLECAK   73 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEESCTTSHHHHHH--------TTGGGCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-----CCCEEECCCCCHHHHHh--------cCcccCC
Confidence            35788899874 4333 33444588999999999998887752     67889999876542110        0124578


Q ss_pred             eEeeccCcc
Q 016715          220 KVVANIPFN  228 (384)
Q Consensus       220 ~Vv~NlPy~  228 (384)
                      .||...|-.
T Consensus        74 ~vi~~~~~~   82 (140)
T 3fwz_A           74 WLILTIPNG   82 (140)
T ss_dssp             EEEECCSCH
T ss_pred             EEEEECCCh
Confidence            888777753

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=92.34  E-value=0.58  Score=42.79  Aligned_cols=83  Identities=13%  Similarity=0.191  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +|+.+|=-|.+.|.   .+..|++.|++|+.+|.+++-++.+.+.+... .++..+.+|..+...-+.+.+....  ..+
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~--~~G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFE--TYS   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence            57888888977664   34455667999999999999888777766533 4788999999876533322221111  226


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        84 ~iDiLVNNA   92 (254)
T 4fn4_A           84 RIDVLCNNA   92 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.07  E-value=0.62  Score=37.74  Aligned_cols=72  Identities=21%  Similarity=0.269  Sum_probs=47.8

Q ss_pred             CCEEEEEcCcc-hH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          142 GDIVLEIGPGT-GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       142 ~~~VLEIG~G~-G~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .++|+=+|+|. |. ++..|.+.|.+|+++|.+++.++.+++.     .+.++.+|..+...-..        ......|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~--------~~~~~~d   72 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-----GFDAVIADPTDESFYRS--------LDLEGVS   72 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHHHHH--------SCCTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHHHHh--------CCcccCC
Confidence            35788899864 22 2334444588999999999988877653     56788999876432110        0124578


Q ss_pred             eEeeccC
Q 016715          220 KVVANIP  226 (384)
Q Consensus       220 ~Vv~NlP  226 (384)
                      .||...|
T Consensus        73 ~vi~~~~   79 (141)
T 3llv_A           73 AVLITGS   79 (141)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            8887776

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.04  E-value=0.58  Score=41.88  Aligned_cols=84  Identities=17%  Similarity=0.193  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.+++-.+.+.+.+.. .+++.++.+|+.+...-..+.+....  ..+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLA--EFG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence            4678998997654   24455556699999999999888777666543 34788999998875432222211111  124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.+|.|.-
T Consensus        86 ~id~li~~Ag   95 (253)
T 3qiv_A           86 GIDYLVNNAA   95 (253)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899988753

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=91.84  E-value=0.82  Score=40.69  Aligned_cols=83  Identities=14%  Similarity=0.175  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.++.-.+.+.+.+.. ..++.++.+|..+...-..+.+...  ...+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIK--AENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH--HHcC
Confidence            3578888887654   24455556699999999999887776665543 2478999999887543222221111  1235


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        82 ~id~li~~A   90 (247)
T 3lyl_A           82 AIDILVNNA   90 (247)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=91.83  E-value=0.71  Score=41.65  Aligned_cols=83  Identities=13%  Similarity=0.230  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+... +++.++.+|..+...-..+.+....  ..+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDE--KFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence            4678888887654   234455566999999999998888877776543 4789999999875432222111111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|.
T Consensus        83 ~id~lv~nA   91 (257)
T 3imf_A           83 RIDILINNA   91 (257)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.83  E-value=0.63  Score=43.08  Aligned_cols=84  Identities=13%  Similarity=0.120  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcc----h-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGT----G-SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~----G-~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++.    | .++..|++.|++|+.++.++...+.+.+.....+++.++.+|+.+...-..+.+....  ..
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~  107 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEK--KW  107 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHH--HT
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH--hc
Confidence            578899999763    3 3456677779999999999766555554443335788999998875432222211111  22


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|++|.|.-
T Consensus       108 g~iD~lVnnAG  118 (293)
T 3grk_A          108 GKLDFLVHAIG  118 (293)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57899998753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=91.59  E-value=0.86  Score=43.48  Aligned_cols=98  Identities=14%  Similarity=0.105  Sum_probs=60.4

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhh
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      +...+++|++||-+|+|. |.++..+++. |++|++++.+++-.+.+++.-    --.++..+..  ++.+.....    
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lG----a~~vi~~~~~--~~~~~v~~~----  252 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALG----ADHGINRLEE--DWVERVYAL----  252 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----CSEEEETTTS--CHHHHHHHH----
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcC----CCEEEcCCcc--cHHHHHHHH----
Confidence            345677899999999886 7777777775 889999999998888877641    1123332211  111111111    


Q ss_pred             ccCCCcceEeeccCccccHHHHHHhcccCC
Q 016715          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~  242 (384)
                      ..+..+|+|+-+..-......+..+.++|.
T Consensus       253 ~~g~g~D~vid~~g~~~~~~~~~~l~~~G~  282 (363)
T 3uog_A          253 TGDRGADHILEIAGGAGLGQSLKAVAPDGR  282 (363)
T ss_dssp             HTTCCEEEEEEETTSSCHHHHHHHEEEEEE
T ss_pred             hCCCCceEEEECCChHHHHHHHHHhhcCCE
Confidence            122368999876654444555566655554

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.52  E-value=0.98  Score=40.86  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+.. ..++.++.+|..+...-..+.+...  ...+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   87 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETM--KAYG   87 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            56789999986652   3455666799999999998877776665543 3478999999987643222211111  1235


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        88 ~id~lv~nA   96 (264)
T 3ucx_A           88 RVDVVINNA   96 (264)
T ss_dssp             CCSEEEECC
T ss_pred             CCcEEEECC
Confidence            789999875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.52  E-value=0.75  Score=42.66  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+.. ..++.++.+|+.+...-..+.+....  ..+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g  107 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFR--LLG  107 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH--hCC
Confidence            5778999998755   24455556699999999999888777666543 34789999998875432211111111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|.
T Consensus       108 ~id~lvnnA  116 (301)
T 3tjr_A          108 GVDVVFSNA  116 (301)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=91.48  E-value=1.3  Score=42.06  Aligned_cols=49  Identities=31%  Similarity=0.410  Sum_probs=40.9

Q ss_pred             HHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCc-EEEEeCCHHHHHHHHHH
Q 016715          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GAT-VLAIEKDQHMVGLVRER  182 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~-V~avE~d~~~~~~a~~~  182 (384)
                      ++...+.+|++||=+|+|. |.++..+++. |++ |+++|.+++-.+.+++.
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            4556788999999999976 7778788776 776 99999999999998876

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=91.45  E-value=0.84  Score=41.85  Aligned_cols=84  Identities=14%  Similarity=0.133  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcccccc-chhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC-HIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~-~~~~~~~~~~~~~~~  214 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+...  .++.++.+|+.+. ..-..+.+.+..  .
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~--~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT--H   88 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH--H
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH--h
Confidence            4678888887654   234455566999999999988776666655432  3789999999886 432222222211  1


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|++|.|.-
T Consensus        89 ~g~iD~lv~nAg  100 (311)
T 3o26_A           89 FGKLDILVNNAG  100 (311)
T ss_dssp             HSSCCEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            257899998854

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.34  E-value=0.72  Score=41.69  Aligned_cols=84  Identities=14%  Similarity=0.172  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+.. .+++.++.+|+.+...-..+.+-...  ..+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLA--AHG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH--hcC
Confidence            5678998887644   22344455699999999999887776666543 34788999998875432222111111  124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.+|.|.-
T Consensus       106 ~id~lv~~Ag  115 (262)
T 3rkr_A          106 RCDVLVNNAG  115 (262)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899988754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.32  E-value=1.1  Score=42.50  Aligned_cols=101  Identities=24%  Similarity=0.277  Sum_probs=62.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhH
Q 016715          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      ..++...+.++++||-+|+|. |.++..+++. |+ +|+++|.++.-.+.+++.-    --.++..  .+.++.+.....
T Consensus       157 ~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lG----a~~vi~~--~~~~~~~~v~~~  230 (352)
T 3fpc_A          157 HGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYG----ATDIINY--KNGDIVEQILKA  230 (352)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHT----CCEEECG--GGSCHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC----CceEEcC--CCcCHHHHHHHH
Confidence            344667788999999999986 8888888876 77 8999999998888887642    1123322  122222111111


Q ss_pred             HhhhccCCCcceEeeccCc-cccHHHHHHhcccCC
Q 016715          209 FERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGD  242 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy-~i~~~il~~L~~~g~  242 (384)
                          ..+..+|+|+-...- ......+..+.++|.
T Consensus       231 ----t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~  261 (352)
T 3fpc_A          231 ----TDGKGVDKVVIAGGDVHTFAQAVKMIKPGSD  261 (352)
T ss_dssp             ----TTTCCEEEEEECSSCTTHHHHHHHHEEEEEE
T ss_pred             ----cCCCCCCEEEECCCChHHHHHHHHHHhcCCE
Confidence                122368988865544 234455555555554

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=91.20  E-value=0.38  Score=51.15  Aligned_cols=55  Identities=16%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             CCEEEEEcCcchHHHHHHHHcC------C-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAG------A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~------~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~  199 (384)
                      ..+|+|+.||.|.++.-+.+.|      . -+.|+|+|+.+++-.+.|.   ++..+.++|+.++
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh---p~~~~~~~di~~i  273 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH---PQTEVRNEKADEF  273 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC---TTSEEEESCHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC---CCCceecCcHHHh
Confidence            3589999999999998887765      3 4679999999999888875   4566777776543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.14  E-value=0.35  Score=45.70  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=39.4

Q ss_pred             HHhcCCCCCEEEEEcCc--chHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G--~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      +...++++++||-+|+|  .|.++..+++. |++|++++.+++-.+.+++.
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l  188 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL  188 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC
Confidence            44567889999999987  68888777775 89999999998888888764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=91.11  E-value=0.55  Score=42.37  Aligned_cols=82  Identities=13%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++.-++.+.+.+.. .+++.++.+|+.+...-..+.+....  . +
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~-g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADA--H-A   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH--H-S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHh--h-C
Confidence            46788988887652   4455556699999999998877766665543 34789999998875432222221211  2 5


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        83 ~id~lv~nA   91 (252)
T 3h7a_A           83 PLEVTIFNV   91 (252)
T ss_dssp             CEEEEEECC
T ss_pred             CceEEEECC
Confidence            789998774

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.05  E-value=0.95  Score=40.83  Aligned_cols=84  Identities=20%  Similarity=0.320  Sum_probs=55.8

Q ss_pred             CCCEEEEEcC-cc--hH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGP-GT--GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~-G~--G~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+++||=.|+ |.  |. ++..|++.|++|+.++.+..-.+.+.+.+...  .++.++.+|+.+...-..+.+....  .
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE--K   98 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH--H
Confidence            4678998887 54  43 44566777999999999988877776666432  4799999999875432222211111  1


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|.+|.|.-
T Consensus        99 ~g~id~li~~Ag  110 (266)
T 3o38_A           99 AGRLDVLVNNAG  110 (266)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCcEEEECCC
Confidence            246899988743

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=90.95  E-value=0.97  Score=41.31  Aligned_cols=83  Identities=20%  Similarity=0.280  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+...+++.++.+|..+...-+.+.+...  ...+.
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  105 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALG--ELSAR  105 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHH--HHCSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence            4678998887644   233445556999999999988776666555433478888888877542221111111  11256


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|.
T Consensus       106 iD~lvnnA  113 (276)
T 2b4q_A          106 LDILVNNA  113 (276)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=90.79  E-value=1.1  Score=41.04  Aligned_cols=82  Identities=12%  Similarity=0.133  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhccC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~  215 (384)
                      .++++|=.|++.|   .++..|++.|++|++++.++.-++.+.+.+.. ..++.++.+|+.+...-..+. .+.+   ..
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~   99 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVE---RF   99 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence            4678999997655   23455566699999999999887776666543 347899999988754322111 1111   12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|-
T Consensus       100 g~id~lv~nA  109 (279)
T 3sju_A          100 GPIGILVNSA  109 (279)
T ss_dssp             CSCCEEEECC
T ss_pred             CCCcEEEECC
Confidence            5689998874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.74  E-value=0.51  Score=45.74  Aligned_cols=48  Identities=23%  Similarity=0.351  Sum_probs=40.4

Q ss_pred             HHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~  181 (384)
                      +....+.+|++||-+|+|. |.++..+++. |+ +|+++|.+++-++.+++
T Consensus       178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            3556778999999999987 8888888875 88 89999999998888764

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=90.70  E-value=0.38  Score=44.97  Aligned_cols=74  Identities=18%  Similarity=0.222  Sum_probs=48.3

Q ss_pred             HHHHHHhc-----CCCCCEEEEEcC------cchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccc
Q 016715          131 DQLAAAAA-----VQEGDIVLEIGP------GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF  196 (384)
Q Consensus       131 ~~il~~l~-----~~~~~~VLEIG~------G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~  196 (384)
                      .++.+.++     ...+++|||+|+      -+|..  .+.+.   |+.|+++|+.+-.         ...+ .+++||.
T Consensus        94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~---------sda~-~~IqGD~  161 (344)
T 3r24_A           94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV---------SDAD-STLIGDC  161 (344)
T ss_dssp             HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB---------CSSS-EEEESCG
T ss_pred             HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc---------cCCC-eEEEccc
Confidence            45666663     346899999996      56773  33333   4589999987432         1123 4599997


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      .+...             ..++|+|+|++.-+.
T Consensus       162 ~~~~~-------------~~k~DLVISDMAPNt  181 (344)
T 3r24_A          162 ATVHT-------------ANKWDLIISDMYDPR  181 (344)
T ss_dssp             GGEEE-------------SSCEEEEEECCCCTT
T ss_pred             ccccc-------------CCCCCEEEecCCCCc
Confidence            66432             367999999865433

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=90.43  E-value=1.7  Score=39.09  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.++.-.+.+.+.+.  +++.++.+|..+...-.... .+.+   ..+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~---~~g   81 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG--PAAYAVQMDVTRQDSIDAAIAATVE---HAG   81 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHH---HSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CCceEEEeeCCCHHHHHHHHHHHHH---HcC
Confidence            4678998887654   2344555669999999999887776666553  47889999988754322111 1111   235


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|-
T Consensus        82 ~id~lv~~A   90 (259)
T 4e6p_A           82 GLDILVNNA   90 (259)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=90.39  E-value=1  Score=41.13  Aligned_cols=82  Identities=17%  Similarity=0.219  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.++...+.+.+......++.++.+|..+...-..+......   .+.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAA---TRR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHH---HSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHh---cCC
Confidence            4678999998755   3445566679999999976555444444333335788999998876533222222221   256


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|.
T Consensus       107 iD~lv~nA  114 (273)
T 3uf0_A          107 VDVLVNNA  114 (273)
T ss_dssp             CCEEEECC
T ss_pred             CcEEEECC
Confidence            89999874

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=90.33  E-value=0.95  Score=43.33  Aligned_cols=87  Identities=18%  Similarity=0.137  Sum_probs=57.4

Q ss_pred             CCEEEEEcCc-chHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          142 GDIVLEIGPG-TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       142 ~~~VLEIG~G-~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      ..+||=+||| .|...+..+....+|+.+|++.+-++.+++      .+..+..|+.+.+.-   ...+      ...|+
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~------~~~~~~~d~~d~~~l---~~~~------~~~Dv   80 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE------FATPLKVDASNFDKL---VEVM------KEFEL   80 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT------TSEEEECCTTCHHHH---HHHH------TTCSE
T ss_pred             ccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc------cCCcEEEecCCHHHH---HHHH------hCCCE
Confidence            4689999995 344444444446689999999887776643      345566777654311   1111      46799


Q ss_pred             EeeccCccccHHHHHHhcccCCC
Q 016715          221 VVANIPFNISTDVIKQLLPMGDI  243 (384)
Q Consensus       221 Vv~NlPy~i~~~il~~L~~~g~~  243 (384)
                      ||+-+|++...++.+..++.|.-
T Consensus        81 Vi~~~p~~~~~~v~~~~~~~g~~  103 (365)
T 3abi_A           81 VIGALPGFLGFKSIKAAIKSKVD  103 (365)
T ss_dssp             EEECCCGGGHHHHHHHHHHHTCE
T ss_pred             EEEecCCcccchHHHHHHhcCcc
Confidence            99998888888888777765543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=90.31  E-value=1  Score=40.54  Aligned_cols=83  Identities=13%  Similarity=0.153  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++-.+.+.+.+.. .+++.++.+|..+...-+.+.+....  ..+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALD--QFG   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence            46788888876552   3445556699999999998877776665543 35789999999875432222111111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        89 ~id~lv~nA   97 (256)
T 3gaf_A           89 KITVLVNNA   97 (256)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=90.21  E-value=1.3  Score=40.51  Aligned_cols=83  Identities=14%  Similarity=0.231  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.++.-.+.+.+.+...    .++.++.+|..+...-..+.+....  
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA--   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH--
Confidence            4678998887654   234455666999999999998777766655432    2688899998875432211111111  


Q ss_pred             cCCCcceEeecc
Q 016715          214 SSSGFAKVVANI  225 (384)
Q Consensus       214 ~~~~~d~Vv~Nl  225 (384)
                      ..+..|.+|.|-
T Consensus        88 ~~g~id~lv~nA   99 (281)
T 3svt_A           88 WHGRLHGVVHCA   99 (281)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            124678998774

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=90.20  E-value=1.5  Score=40.21  Aligned_cols=82  Identities=23%  Similarity=0.212  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~  215 (384)
                      .++.||=.|++.|.   ++..|++.|++|+.++.++.-++.+.+.+.. .+++.++.+|..+...-..+. .+.+   ..
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~  103 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL---KF  103 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence            46789988876542   3345556699999999999887777766653 347889999988754322211 1111   12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|-
T Consensus       104 g~iD~lVnnA  113 (283)
T 3v8b_A          104 GHLDIVVANA  113 (283)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789998774

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=90.20  E-value=0.18  Score=47.69  Aligned_cols=49  Identities=18%  Similarity=0.338  Sum_probs=39.4

Q ss_pred             HHhcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHh
Q 016715          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF  183 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~  183 (384)
                      +...+.++++||-+|+  |.|..+..+++. |++|++++.+++-.+.+.+.+
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~  194 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL  194 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc
Confidence            5567889999999998  568888777765 889999999998888774443

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=90.07  E-value=1.4  Score=39.15  Aligned_cols=82  Identities=15%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++ |.++..    |++.|++|++++.++.-.+.+.+.+....++.++.+|..+...-..+.+....  ..+
T Consensus         5 ~~k~vlVtGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEK--AFG   81 (251)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCcEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHH--HhC
Confidence            45688888865 444444    44568999999999877766655554335789999998775422111111110  114


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.||.|.
T Consensus        82 ~id~li~~A   90 (251)
T 1zk4_A           82 PVSTLVNNA   90 (251)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=89.98  E-value=1.7  Score=39.25  Aligned_cols=82  Identities=13%  Similarity=0.184  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++ |.++..    |++.|++|++++.++...+.+.+.+...+++.++.+|..+...-..+.+....  ..+
T Consensus        15 ~~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGA-GGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIA--KHG   91 (278)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             cCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence            46789988875 444444    44568999999999877665555554334789999998875422211111110  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.||.|.
T Consensus        92 ~id~li~~A  100 (278)
T 2bgk_A           92 KLDIMFGNV  100 (278)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            678998764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.97  E-value=1.3  Score=40.14  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+...  .++.++.+|..+...-+.+.+....  ..
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   86 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVE--EF   86 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHH--Hh
Confidence            46788888876542   33445566999999999998877766665433  4789999998875432222111111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|-
T Consensus        87 g~id~lvnnA   96 (262)
T 3pk0_A           87 GGIDVVCANA   96 (262)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...

Probab=89.95  E-value=0.37  Score=39.20  Aligned_cols=50  Identities=20%  Similarity=0.353  Sum_probs=41.6

Q ss_pred             CCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       334 rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      ..|.+.-+|..++  +......+++.+|+++++|+.+||.+|...|-..+++
T Consensus        11 ~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~   62 (126)
T 2vqe_M           11 RNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN   62 (126)
T ss_dssp             CSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT
T ss_pred             CCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH
Confidence            4577788887776  4555678899999999999999999999999988763

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=89.89  E-value=1.4  Score=39.85  Aligned_cols=82  Identities=13%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhh-hHHhhhc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHML-SLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~-~~~~~~~  213 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.+++-.+.+.+.+..   ..++.++.+|..+...-..+. .+.+   
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---   88 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE---   88 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH---
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH---
Confidence            4678998887654   33445556699999999998776655544421   247888999988754222111 1111   


Q ss_pred             cCCCcceEeecc
Q 016715          214 SSSGFAKVVANI  225 (384)
Q Consensus       214 ~~~~~d~Vv~Nl  225 (384)
                      ..+..|++|.|.
T Consensus        89 ~~g~id~lv~nA  100 (267)
T 1iy8_A           89 RFGRIDGFFNNA  100 (267)
T ss_dssp             HHSCCSEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            124689998874

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=89.83  E-value=0.82  Score=42.00  Aligned_cols=83  Identities=18%  Similarity=0.302  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+.. ..++.++.+|..+...-..+.+....  ..+
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVR--RFG   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence            4678888887654   23455566699999999999887777766653 24788899998875432222211111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        85 ~iD~lvnnA   93 (280)
T 3tox_A           85 GLDTAFNNA   93 (280)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=89.71  E-value=1.6  Score=39.81  Aligned_cols=83  Identities=14%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCC----------------HHHHHHHHHHhcC-CCCeEEEEccccccc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD----------------QHMVGLVRERFAS-IDQLKVLQEDFVKCH  200 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d----------------~~~~~~a~~~~~~-~~~v~~~~gD~~~~~  200 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+                ++-++.+.+.+.. ..++.++.+|..+..
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   89 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD   89 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence            46789999987652   445566679999999987                5555555554433 347899999988754


Q ss_pred             hhhhhhhHHhhhccCCCcceEeecc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      .-..+.+....  ..+..|++|.|-
T Consensus        90 ~v~~~~~~~~~--~~g~id~lv~nA  112 (286)
T 3uve_A           90 ALKAAVDSGVE--QLGRLDIIVANA  112 (286)
T ss_dssp             HHHHHHHHHHH--HHSCCCEEEECC
T ss_pred             HHHHHHHHHHH--HhCCCCEEEECC
Confidence            32222211111  124689999874

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=89.71  E-value=1.7  Score=38.94  Aligned_cols=82  Identities=20%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+.  .++.++.+|..+...-..+.+....  ..+.
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~--~~g~   83 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG--DAALAVAADISKEADVDAAVEAALS--KFGK   83 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTSHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHH--hcCC
Confidence            4678999998765   3455666679999999999988877766553  4788999998875432221111111  1246


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|.+|.|.-
T Consensus        84 id~li~~Ag   92 (261)
T 3n74_A           84 VDILVNNAG   92 (261)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            899988743

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=89.68  E-value=1  Score=40.54  Aligned_cols=83  Identities=14%  Similarity=0.229  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---C-CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I-DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~-~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+..   . .++.++.+|..+...-..+.+....  
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ--   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH--
Confidence            4678898888755   24455566699999999998877766655432   2 4788999998875432222111111  


Q ss_pred             cCCCcceEeecc
Q 016715          214 SSSGFAKVVANI  225 (384)
Q Consensus       214 ~~~~~d~Vv~Nl  225 (384)
                      ..+..|++|.|.
T Consensus        84 ~~g~iD~lvnnA   95 (250)
T 3nyw_A           84 KYGAVDILVNAA   95 (250)
T ss_dssp             HHCCEEEEEECC
T ss_pred             hcCCCCEEEECC
Confidence            125689998874

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.67  E-value=0.7  Score=42.79  Aligned_cols=84  Identities=15%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCc----chH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++    .|. ++..|++.|++|+.++.++...+.+.+.....+++.++.+|+.+...-..+.+....  ..
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~  106 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAE--EW  106 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence            46789999974    342 456666779999999999765555544433335678899998875432222211111  12


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|++|.|--
T Consensus       107 g~iD~lVnnAG  117 (296)
T 3k31_A          107 GSLDFVVHAVA  117 (296)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            56899998754

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=89.61  E-value=1.5  Score=39.09  Aligned_cols=83  Identities=17%  Similarity=0.249  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.+++-++.+.+.+.. ..++.++.+|..+...-..+.+....  ..+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~--~~g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVE--ALG   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence            4678888887644   23344555699999999998777666555432 24788899998775422211111111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        84 ~id~lv~nA   92 (247)
T 2jah_A           84 GLDILVNNA   92 (247)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=89.55  E-value=1.3  Score=40.45  Aligned_cols=80  Identities=20%  Similarity=0.278  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.+++-.+.+.+.+  ..++.++.+|..+...-..+. .+.+   ..+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~g  102 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVA---AFG  102 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            4678898887655   244556667999999999988777766655  247889999988754322111 1111   125


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus       103 ~iD~lvnnA  111 (277)
T 3gvc_A          103 GVDKLVANA  111 (277)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=89.51  E-value=0.7  Score=51.80  Aligned_cols=55  Identities=24%  Similarity=0.171  Sum_probs=45.3

Q ss_pred             CCEEEEEcCcchHHHHHHHHcCC-c-EEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc
Q 016715          142 GDIVLEIGPGTGSLTNVLLNAGA-T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~~~-~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~  199 (384)
                      .-+++|+.||.|.++..+...|. + |.++|+|+.+++..+.+.   ++..++.+|+.++
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~---p~~~~~~~DI~~l  907 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN---PGTTVFTEDCNVL  907 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC---TTSEEECSCHHHH
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC---CCCcEeeccHHHH
Confidence            45899999999999999998886 4 779999999999888875   4566777776543

>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=89.51  E-value=0.62  Score=38.96  Aligned_cols=49  Identities=18%  Similarity=0.119  Sum_probs=40.4

Q ss_pred             CCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       334 rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      ..|.+.-+|..++  +......+++.+|+++++|+.+||.+|..+|-..++
T Consensus        17 ~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~   67 (148)
T 3j20_O           17 GNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILA   67 (148)
T ss_dssp             CSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHH
T ss_pred             CCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHh
Confidence            3567777787765  455567889999999999999999999999988775

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=89.40  E-value=1.6  Score=39.46  Aligned_cols=84  Identities=18%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-C--CCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .++.+|=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+.. .  .++.++.+|..+...-..+.+....  .
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER--T   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH--H
Confidence            4678998998765   23445566699999999998877766665532 2  2588999998875432222211111  1


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|++|.|.-
T Consensus        85 ~g~id~lvnnAg   96 (265)
T 3lf2_A           85 LGCASILVNNAG   96 (265)
T ss_dssp             HCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            256899998753

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=89.36  E-value=1.5  Score=39.73  Aligned_cols=83  Identities=16%  Similarity=0.240  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++.-++.+.+.+..  ..++.++.+|..+...-..+.+....  ..
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAE--AF   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH--Hc
Confidence            46788888876542   3445556699999999998877766555432  34789999999886533222221111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|-
T Consensus        97 g~id~lv~nA  106 (266)
T 4egf_A           97 GGLDVLVNNA  106 (266)
T ss_dssp             TSCSEEEEEC
T ss_pred             CCCCEEEECC
Confidence            4689998874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.33  E-value=0.91  Score=42.77  Aligned_cols=50  Identities=24%  Similarity=0.295  Sum_probs=41.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      .+....+.++++||-+|+|. |.++..+++. |++|+++|.+++-.+.+++.
T Consensus       158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  209 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL  209 (340)
T ss_dssp             HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc
Confidence            34555677899999999986 8888888876 88999999999988888763

>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M

Probab=89.31  E-value=0.78  Score=38.65  Aligned_cols=50  Identities=16%  Similarity=0.114  Sum_probs=41.1

Q ss_pred             CCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       334 rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      ..|.+.-+|..++  +......+++.+|+++++|+.+||.+|..+|...+++
T Consensus        24 ~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~   75 (155)
T 2xzm_M           24 GKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIAD   75 (155)
T ss_dssp             CSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHS
T ss_pred             CCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhC
Confidence            3566777887776  4555678899999999999999999999999887764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=89.31  E-value=1  Score=41.14  Aligned_cols=83  Identities=14%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +|+.+|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+.. ..++..+.+|..+...-+.+.+...  ...+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLD--AEGI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--HTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHCC
Confidence            57888888877653   3445556699999999999887776665543 3478888899877543222222111  1336


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        86 ~iDiLVNNA   94 (255)
T 4g81_D           86 HVDILINNA   94 (255)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            789999884

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=89.28  E-value=1.9  Score=39.00  Aligned_cols=82  Identities=12%  Similarity=0.121  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~  214 (384)
                      .+++||=.|++ |.++..+    ++.|++|++++.++.-.+.+.+.+.. ..++.++.+|+.+...-..+. .+.+   .
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~  105 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA---E  105 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHH---H
Confidence            46788888865 4455444    44589999999998777666555432 247899999988754222111 1111   1


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|.||.|.-
T Consensus       106 ~g~iD~li~~Ag  117 (272)
T 1yb1_A          106 IGDVSILVNNAG  117 (272)
T ss_dssp             TCCCSEEEECCC
T ss_pred             CCCCcEEEECCC
Confidence            246899988753

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=89.26  E-value=1.2  Score=40.54  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+.. ..++.++.+|..+...-..+.+....  ..+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVD--TWG   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence            35688888876542   3445556699999999998887777666543 24788888998875432221111111  125


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        81 ~iD~lVnnA   89 (264)
T 3tfo_A           81 RIDVLVNNA   89 (264)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.22  E-value=1.4  Score=40.08  Aligned_cols=82  Identities=13%  Similarity=0.187  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-C---CeEEEEccccccchhhhhhh-HHhhh
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D---QLKVLQEDFVKCHIRSHMLS-LFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~---~v~~~~gD~~~~~~~~~~~~-~~~~~  212 (384)
                      .++++|=.|++.|   .++..|++.|++|++++.++.-++.+.+.+... .   ++.++.+|+.+...-+.+.+ +.+  
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   82 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK--   82 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH--
Confidence            4678888886654   233445556999999999988776665554322 2   68899999887542221111 111  


Q ss_pred             ccCCCcceEeecc
Q 016715          213 KSSSGFAKVVANI  225 (384)
Q Consensus       213 ~~~~~~d~Vv~Nl  225 (384)
                       ..+..|.+|.|.
T Consensus        83 -~~g~iD~lv~nA   94 (280)
T 1xkq_A           83 -QFGKIDVLVNNA   94 (280)
T ss_dssp             -HHSCCCEEEECC
T ss_pred             -hcCCCCEEEECC
Confidence             124689999874

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=89.22  E-value=0.94  Score=41.44  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+.. ..++.++.+|..+...-..+.+....  ..+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~--~~g  108 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTG--ELG  108 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence            46789988877552   3445556699999999998777666655543 24788999998876432222111111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus       109 ~iD~lvnnA  117 (276)
T 3r1i_A          109 GIDIAVCNA  117 (276)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=89.08  E-value=1.4  Score=39.33  Aligned_cols=81  Identities=16%  Similarity=0.221  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++-.+.+.+.+  ..++.++.+|..+...-+.+.+....  ..+.
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~   80 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQA--LTGG   80 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHH--HCCC
Confidence            46789989876542   34455666999999999988777766655  24788899998875432222211111  1246


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|.+|.|-
T Consensus        81 id~lv~nA   88 (247)
T 3rwb_A           81 IDILVNNA   88 (247)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89998874

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=89.08  E-value=0.94  Score=41.34  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++.-++.+.+.+.. ..++.++.+|..+...-..+.+....  ..+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g  102 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDE--QGI  102 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH--HTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--HCC
Confidence            46788888876542   3445556699999999998877766665543 34788999998875432222211111  235


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus       103 ~iD~lv~nA  111 (271)
T 4ibo_A          103 DVDILVNNA  111 (271)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=89.04  E-value=1.6  Score=41.17  Aligned_cols=94  Identities=21%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             cCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          138 AVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       138 ~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+.++++||-+|+  |.|..+..+++. |++|++++.+++-.+.+++. . ..  .++  |..+.++.+.+...    ..
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-g-a~--~~~--d~~~~~~~~~~~~~----~~  232 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL-G-AD--ETV--NYTHPDWPKEVRRL----TG  232 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T-CS--EEE--ETTSTTHHHHHHHH----TT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-C-CC--EEE--cCCcccHHHHHHHH----hC
Confidence            5668899999998  678888877775 88999999999888888653 2 11  222  22222221111111    11


Q ss_pred             CCCcceEeeccCccccHHHHHHhcccC
Q 016715          215 SSGFAKVVANIPFNISTDVIKQLLPMG  241 (384)
Q Consensus       215 ~~~~d~Vv~NlPy~i~~~il~~L~~~g  241 (384)
                      ...+|+||.+..-......+..+.++|
T Consensus       233 ~~~~d~vi~~~g~~~~~~~~~~l~~~G  259 (343)
T 2eih_A          233 GKGADKVVDHTGALYFEGVIKATANGG  259 (343)
T ss_dssp             TTCEEEEEESSCSSSHHHHHHHEEEEE
T ss_pred             CCCceEEEECCCHHHHHHHHHhhccCC
Confidence            246899998766334445555555544

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=89.03  E-value=1.8  Score=39.38  Aligned_cols=79  Identities=10%  Similarity=0.106  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+.  .++.++.+|..+...-..+.+...   ..+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~---~~~~  103 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG--NRAEFVSTNVTSEDSVLAAIEAAN---QLGR  103 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHT---TSSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHH---HhCC
Confidence            4678898887655   2344555669999999999988777766653  478999999887653222222221   2246


Q ss_pred             cceEeec
Q 016715          218 FAKVVAN  224 (384)
Q Consensus       218 ~d~Vv~N  224 (384)
                      .|.+|.|
T Consensus       104 id~lv~~  110 (281)
T 3ppi_A          104 LRYAVVA  110 (281)
T ss_dssp             EEEEEEC
T ss_pred             CCeEEEc
Confidence            7888866

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=89.03  E-value=0.77  Score=43.89  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=39.9

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      +...+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-.+.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            445677899999999987 8888888875 87 699999999988888754

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=89.02  E-value=0.8  Score=41.24  Aligned_cols=84  Identities=14%  Similarity=0.108  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCc-chHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPG-TGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G-~G~lt----~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      ++++||=.|++ +|.++    ..|++.|++|+.++.+....+.+++.....+++.++.+|+.+...-..+.+....  ..
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   90 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKT--HW   90 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH--HC
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence            57899999964 23333    4455569999999988665555554444345688999998875432222211111  22


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|.+|.|.-
T Consensus        91 g~id~lv~nAg  101 (271)
T 3ek2_A           91 DSLDGLVHSIG  101 (271)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57899988743

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=89.00  E-value=2.1  Score=39.00  Aligned_cols=82  Identities=12%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhccC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~  215 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+.. ..++.++.+|..+...-..+. .+.+   ..
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~~   97 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVE---RY   97 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---HT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH---Hh
Confidence            4678998887644   23344455699999999998776655554432 247888999987754222111 1111   12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|.
T Consensus        98 g~iD~lv~~A  107 (277)
T 2rhc_B           98 GPVDVLVNNA  107 (277)
T ss_dssp             CSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689998874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=88.99  E-value=1.5  Score=41.94  Aligned_cols=47  Identities=19%  Similarity=0.302  Sum_probs=37.9

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~  181 (384)
                      +...+.++++||-+|+|. |.++..+++. |+ +|+++|.++.-.+.+++
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            345677899999999875 7777777775 87 79999999988888874

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=88.99  E-value=1.8  Score=39.51  Aligned_cols=80  Identities=14%  Similarity=0.221  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~  216 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.++.-++.+.....  .++.++.+|+.+...-..+. .+.+   ..+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   78 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG--GNAVGVVGDVRSLQDQKRAAERCLA---AFG   78 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB--TTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC--CcEEEEEcCCCCHHHHHHHHHHHHH---hcC
Confidence            4678998898765   3445556679999999999887776665542  47889999988754322111 1111   125


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|.
T Consensus        79 ~iD~lvnnA   87 (281)
T 3zv4_A           79 KIDTLIPNA   87 (281)
T ss_dssp             CCCEEECCC
T ss_pred             CCCEEEECC
Confidence            689998774

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=88.83  E-value=1.4  Score=40.01  Aligned_cols=83  Identities=18%  Similarity=0.140  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCC------------HHHHHHHHHHhc-CCCCeEEEEccccccchhhh
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKD------------QHMVGLVRERFA-SIDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d------------~~~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~~  204 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.+            ++-++.+.+.+. ...++.++.+|..+...-..
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            4678999997654   3445566679999999987            555554444332 23588999999987543222


Q ss_pred             hhhHHhhhccCCCcceEeecc
Q 016715          205 MLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      +.+....  ..+..|++|.|-
T Consensus        92 ~~~~~~~--~~g~id~lv~nA  110 (278)
T 3sx2_A           92 ALQAGLD--ELGRLDIVVANA  110 (278)
T ss_dssp             HHHHHHH--HHCCCCEEEECC
T ss_pred             HHHHHHH--HcCCCCEEEECC
Confidence            1111111  124689999874

>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=88.81  E-value=0.64  Score=39.04  Aligned_cols=49  Identities=10%  Similarity=0.127  Sum_probs=41.6

Q ss_pred             CCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       334 rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      .+|.+.-+|..++  +......+++.+|+++++|+.+||.+|..+|-..++
T Consensus        22 ~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~   72 (152)
T 3iz6_M           22 GKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVH   72 (152)
T ss_dssp             CSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHH
T ss_pred             CCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHH
Confidence            4677888888775  455567889999999999999999999999998875

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=88.78  E-value=2.2  Score=38.43  Aligned_cols=82  Identities=11%  Similarity=0.110  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhh-hhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~  215 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+... .++.++.+|..+...-.. +..+.+   ..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   82 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR---DF   82 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---Hh
Confidence            46788988876542   33444556999999999987776665555432 378889999877542211 111111   12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|.
T Consensus        83 g~id~lv~nA   92 (262)
T 1zem_A           83 GKIDFLFNNA   92 (262)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689998874

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=88.76  E-value=2.2  Score=38.98  Aligned_cols=84  Identities=13%  Similarity=0.131  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeC-CHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~-d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++. +++..+.+.+.+.. ..++.++.+|..+...-..+.+....  ..
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~  105 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA--EF  105 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH--HH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH--Hc
Confidence            56789988876552   34555666999999995 76666655554432 34789999999876533222211111  12


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|.+|.|.-
T Consensus       106 g~iD~lvnnAg  116 (280)
T 4da9_A          106 GRIDCLVNNAG  116 (280)
T ss_dssp             SCCCEEEEECC
T ss_pred             CCCCEEEECCC
Confidence            46899988753

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=88.70  E-value=1.7  Score=39.02  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+.  .++.++.+|..+...-..+.+....  ..+.
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~   82 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG--PRVHALRSDIADLNEIAVLGAAAGQ--TLGA   82 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHH--HHSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHHH--HhCC
Confidence            56789999976542   334455669999999999988777766653  4788999998875432222111111  1256


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|-
T Consensus        83 id~lv~nA   90 (255)
T 4eso_A           83 IDLLHINA   90 (255)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            88988874

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=88.66  E-value=2  Score=38.62  Aligned_cols=82  Identities=13%  Similarity=0.184  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~  214 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+..  ..++.++.+|..+...-.... .+.+   .
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRS---S   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            4678888887644   23344555699999999998766655444422  247889999988754222111 1111   1


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|.+|.|.
T Consensus        83 ~g~id~lv~~A   93 (263)
T 3ai3_A           83 FGGADILVNNA   93 (263)
T ss_dssp             HSSCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689998875

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=88.52  E-value=1.8  Score=38.74  Aligned_cols=81  Identities=19%  Similarity=0.285  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.++.-.+.+.+.+.  .++..+.+|..+...-+.+.+....  ..+.
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g~   83 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG--DNGKGMALNVTNPESIEAVLKAITD--EFGG   83 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHH--HHCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--ccceEEEEeCCCHHHHHHHHHHHHH--HcCC
Confidence            4678888887755   3445556679999999999988777666654  2577888898775432221111111  1246


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|-
T Consensus        84 iD~lv~nA   91 (248)
T 3op4_A           84 VDILVNNA   91 (248)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89998874

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=88.49  E-value=1.9  Score=39.83  Aligned_cols=83  Identities=17%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCC------------HHHHHHHHHHhcC-CCCeEEEEccccccchhhh
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d------------~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~  204 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+            ++-++.+.+.+.. ..++.++.+|+.+...-..
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            56789999987652   345556679999999987            5555544444432 3488999999987543222


Q ss_pred             hhhHHhhhccCCCcceEeecc
Q 016715          205 MLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      +.+....  ..+..|++|.|-
T Consensus       107 ~~~~~~~--~~g~iD~lv~nA  125 (299)
T 3t7c_A          107 AVDDGVT--QLGRLDIVLANA  125 (299)
T ss_dssp             HHHHHHH--HHSCCCEEEECC
T ss_pred             HHHHHHH--HhCCCCEEEECC
Confidence            2111111  125689998774

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.46  E-value=2.2  Score=38.74  Aligned_cols=83  Identities=14%  Similarity=0.083  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeC-------------CHHHHHHHHHHhcC-CCCeEEEEccccccchhh
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-------------DQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~-------------d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~  203 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.             +++-++.+.+.+.. ..++.++.+|..+...-.
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   93 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALR   93 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence            57789999887653   34555667999999998             66666666555543 347889999988754322


Q ss_pred             hhhhHHhhhccCCCcceEeecc
Q 016715          204 HMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      .+.+....  ..+..|++|.|-
T Consensus        94 ~~~~~~~~--~~g~id~lvnnA  113 (280)
T 3pgx_A           94 ELVADGME--QFGRLDVVVANA  113 (280)
T ss_dssp             HHHHHHHH--HHCCCCEEEECC
T ss_pred             HHHHHHHH--HcCCCCEEEECC
Confidence            21111111  124689999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.44  E-value=1.2  Score=42.34  Aligned_cols=48  Identities=27%  Similarity=0.363  Sum_probs=39.7

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      +...+.+|++||-+|+|. |.++..+++. |+ +|+++|.+++-.+.+++.
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  215 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI  215 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            455778899999999986 8888888875 87 899999999888888753

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=88.42  E-value=2.1  Score=37.96  Aligned_cols=81  Identities=12%  Similarity=0.046  Sum_probs=52.7

Q ss_pred             CCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      +++||=.|++.|.   ++..|++.|++|+.++.++.-++.+.+.+.  .++.++.+|..+...-+.+.+....  ..+..
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~--~~g~i   78 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG--NAVIGIVADLAHHEDVDVAFAAAVE--WGGLP   78 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTSHHHHHHHHHHHHH--HHCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHHHHH--hcCCC
Confidence            4678888876542   344555669999999999988777766653  2688999998875432211111111  12468


Q ss_pred             ceEeeccC
Q 016715          219 AKVVANIP  226 (384)
Q Consensus       219 d~Vv~NlP  226 (384)
                      |++|.|--
T Consensus        79 d~lvnnAg   86 (235)
T 3l6e_A           79 ELVLHCAG   86 (235)
T ss_dssp             SEEEEECC
T ss_pred             cEEEECCC
Confidence            99988754

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=88.40  E-value=2.1  Score=38.16  Aligned_cols=81  Identities=16%  Similarity=0.174  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhh-hhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSH-MLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~  214 (384)
                      .+++||=.|++ |.++..+    ++.|++|++++.++.-.+.+.+.+.. ..++.++.+|..+...-.. +..+.+   .
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   87 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHE---Q   87 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH---H
Confidence            46788888865 4444444    45689999999998766555444432 2478999999887542211 111111   1


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|.||.|.
T Consensus        88 ~~~id~vi~~A   98 (260)
T 3awd_A           88 EGRVDILVACA   98 (260)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            14678998774

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.38  E-value=3.4  Score=34.80  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=47.0

Q ss_pred             CCEEEEEcCcc-hHH-HHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc-cCCC
Q 016715          142 GDIVLEIGPGT-GSL-TNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK-SSSG  217 (384)
Q Consensus       142 ~~~VLEIG~G~-G~l-t~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~-~~~~  217 (384)
                      +++|+=+|+|. |.. +..|.+. |.+|+++|.+++-++.+++.     ++.++.+|..+...-..        . ....
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~--------~~~~~~  105 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE-----GRNVISGDATDPDFWER--------ILDTGH  105 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT-----TCCEEECCTTCHHHHHT--------BCSCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC-----CCCEEEcCCCCHHHHHh--------ccCCCC
Confidence            56799898874 433 3444556 88999999999888776642     46678888765321110        0 1245


Q ss_pred             cceEeeccCc
Q 016715          218 FAKVVANIPF  227 (384)
Q Consensus       218 ~d~Vv~NlPy  227 (384)
                      .|.||...|-
T Consensus       106 ad~vi~~~~~  115 (183)
T 3c85_A          106 VKLVLLAMPH  115 (183)
T ss_dssp             CCEEEECCSS
T ss_pred             CCEEEEeCCC
Confidence            7888876653

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=88.33  E-value=2.2  Score=38.23  Aligned_cols=84  Identities=18%  Similarity=0.208  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+.. ..++.++.+|..+...-..+.+.... ...+
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~g   86 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN-HFHG   86 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH-HTTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH-HcCC
Confidence            4678888887544   23344455699999999998776655544432 24688889998775322211111111 0114


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        87 ~id~lv~~A   95 (260)
T 2ae2_A           87 KLNILVNNA   95 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=88.33  E-value=1.3  Score=42.20  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~  181 (384)
                      +...+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-.+.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            345677899999999875 7777777775 87 79999999988888874

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=88.33  E-value=2.1  Score=39.47  Aligned_cols=81  Identities=11%  Similarity=0.158  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+.+|=-|++.|.   .+..|++.|++|+.++.+++.++.+.+.+.  +++..+.+|..+...-+.+.+....  ..+.
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~--~~G~  103 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG--GGAVGIQADSANLAELDRLYEKVKA--EAGR  103 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CCeEEEEecCCCHHHHHHHHHHHHH--HcCC
Confidence            57889988987663   344555669999999999988887766653  4678889998876533322221111  2257


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|-
T Consensus       104 iDiLVNNA  111 (273)
T 4fgs_A          104 IDVLFVNA  111 (273)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=88.32  E-value=1.2  Score=41.23  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~-~~~~~~~~  214 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++.-++.+.+.+...  +++.++.+|+.+...-..+. .+.+   .
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVD---A  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHH---H
Confidence            46788888876542   34555667999999999988777766666533  47889999998754322111 1111   1


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|++|.|-
T Consensus       117 ~g~iD~lvnnA  127 (293)
T 3rih_A          117 FGALDVVCANA  127 (293)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689998874

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.29  E-value=2  Score=38.98  Aligned_cols=82  Identities=17%  Similarity=0.120  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCC------------HHHHHHHHHHhcC-CCCeEEEEccccccchhhh
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d------------~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~  204 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+            .+-++.+...+.. ..++.++.+|..+...-..
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            46789999986542   344556669999999987            5555555544432 3478999999887543221


Q ss_pred             hh-hHHhhhccCCCcceEeecc
Q 016715          205 ML-SLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       205 ~~-~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      +. .+.+   ..+..|++|.|-
T Consensus        89 ~~~~~~~---~~g~id~lv~nA  107 (287)
T 3pxx_A           89 ELANAVA---EFGKLDVVVANA  107 (287)
T ss_dssp             HHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHH---HcCCCCEEEECC
Confidence            11 1111   124689999874

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=88.24  E-value=2.5  Score=37.80  Aligned_cols=81  Identities=16%  Similarity=0.194  Sum_probs=50.0

Q ss_pred             CCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhh-hhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~~  216 (384)
                      +++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+.. ..++.++.+|..+...-.. +..+.+   ..+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~~g   78 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARK---TLG   78 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH---HTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---HhC
Confidence            357788886544   23344555699999999998766655544432 2478889999887542211 111111   124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        79 ~id~lv~nA   87 (256)
T 1geg_A           79 GFDVIVNNA   87 (256)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=88.23  E-value=1.3  Score=41.85  Aligned_cols=97  Identities=21%  Similarity=0.271  Sum_probs=58.7

Q ss_pred             HHhcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhh
Q 016715          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      +...+.++++||-+|+  |.|.++..+++. |++|++++.+++-.+.+++.    +.-.++..+ .+  +.+.....   
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~~v~~~~-~~--~~~~v~~~---  222 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GADIVLPLE-EG--WAKAVREA---  222 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCSEEEESS-TT--HHHHHHHH---
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCcEEecCc-hh--HHHHHHHH---
Confidence            3445678999999997  458888888775 88999999998888877764    111233322 11  11111111   


Q ss_pred             hccCCCcceEeeccCccccHHHHHHhcccCC
Q 016715          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~  242 (384)
                       .....+|+|+-+..-......+..+.++|.
T Consensus       223 -~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~  252 (342)
T 4eye_A          223 -TGGAGVDMVVDPIGGPAFDDAVRTLASEGR  252 (342)
T ss_dssp             -TTTSCEEEEEESCC--CHHHHHHTEEEEEE
T ss_pred             -hCCCCceEEEECCchhHHHHHHHhhcCCCE
Confidence             112368999876654444555555555554

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=88.06  E-value=2.7  Score=38.12  Aligned_cols=84  Identities=15%  Similarity=0.176  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|.   ++..|++.|++|++++.++.-++.+.+.+.. ..++.++.+|..+...-....+.... ...+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~g   98 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH-VFDG   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-HTTS
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH-HcCC
Confidence            46788988875442   2334455699999999998776655544432 24788899998775432211111111 0115


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|.
T Consensus        99 ~id~lv~nA  107 (273)
T 1ae1_A           99 KLNILVNNA  107 (273)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            689998874

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=88.06  E-value=2.4  Score=37.57  Aligned_cols=78  Identities=17%  Similarity=0.259  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      ++++||=.|++.|.   ++..|++.|++|+.++.++.-++.+.+.+.  .++.+..+|..+...-.   .+++   ..+.
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~---~~~~---~~~~   84 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK--DNYTIEVCNLANKEECS---NLIS---KTSN   84 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHHH---HHHH---TCSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc--cCccEEEcCCCCHHHHH---HHHH---hcCC
Confidence            57789988876542   344555669999999999988877766654  47888889887654221   2222   2246


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|.+|.|.-
T Consensus        85 id~li~~Ag   93 (249)
T 3f9i_A           85 LDILVCNAG   93 (249)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998754

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=88.02  E-value=2.4  Score=38.61  Aligned_cols=82  Identities=13%  Similarity=0.159  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++.-++.+.+...  .++.++.+|+.+...-..+.+....  ..+.
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g~  101 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG--SKAFGVRVDVSSAKDAESMVEKTTA--KWGR  101 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHH--HcCC
Confidence            46789988877552   344555669999999999887776665542  4788899998875432221111111  1246


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|++|.|--
T Consensus       102 iD~lv~nAg  110 (277)
T 4dqx_A          102 VDVLVNNAG  110 (277)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899988743

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=88.01  E-value=1.9  Score=41.09  Aligned_cols=48  Identities=17%  Similarity=0.304  Sum_probs=38.4

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      +...+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-.+.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l  234 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence            345677899999999875 7777777775 87 799999999888888753

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=88.01  E-value=2.2  Score=40.52  Aligned_cols=61  Identities=18%  Similarity=0.132  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCC-HHHHHHHHHHhcCC-----------------------CCeEEEEccc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-----------------------DQLKVLQEDF  196 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d-~~~~~~a~~~~~~~-----------------------~~v~~~~gD~  196 (384)
                      +...|+.+|||..+....|...+..+.-+|+| |+.++.=++.+...                       ++..++-+|+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            45789999999999999998864455555555 66666555444321                       4788888998


Q ss_pred             cccch
Q 016715          197 VKCHI  201 (384)
Q Consensus       197 ~~~~~  201 (384)
                      .+.++
T Consensus       177 ~d~~w  181 (334)
T 1rjd_A          177 NDITE  181 (334)
T ss_dssp             TCHHH
T ss_pred             CCcHH
Confidence            88654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=87.99  E-value=1.3  Score=40.50  Aligned_cols=82  Identities=20%  Similarity=0.225  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++.-.+.+.+.+.. ..++.++.+|..+...-..+.+....  . +
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~--~-g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEA--I-A  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHH--H-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHH--h-C
Confidence            46789988876542   3445556699999999988766665555432 35789999999876533322222211  1 5


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus       109 ~iD~lvnnA  117 (275)
T 4imr_A          109 PVDILVINA  117 (275)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789998874

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=87.95  E-value=1.7  Score=39.60  Aligned_cols=82  Identities=18%  Similarity=0.215  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCc----chH-HHHHHHHcCCcEEEEeCCH--HHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~avE~d~--~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .+++||=.|++    .|. ++..|++.|++|+.++.+.  +.++.+.   ...+++.++.+|+.+...-..+.+....  
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--   99 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLC---AEFNPAAVLPCDVISDQEIKDLFVELGK--   99 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHH---GGGCCSEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHH---HhcCCceEEEeecCCHHHHHHHHHHHHH--
Confidence            56899999943    453 4566677799999999987  3333332   2235688999998875432222211111  


Q ss_pred             cCCCcceEeeccCc
Q 016715          214 SSSGFAKVVANIPF  227 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy  227 (384)
                      ..+..|.+|.|.-+
T Consensus       100 ~~g~id~li~nAg~  113 (280)
T 3nrc_A          100 VWDGLDAIVHSIAF  113 (280)
T ss_dssp             HCSSCCEEEECCCC
T ss_pred             HcCCCCEEEECCcc
Confidence            23578999988543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=87.95  E-value=1.9  Score=41.21  Aligned_cols=47  Identities=21%  Similarity=0.328  Sum_probs=37.8

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~  181 (384)
                      +...+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-.+.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            345677899999999876 7777777775 77 79999999988888764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=87.94  E-value=1.8  Score=39.15  Aligned_cols=83  Identities=17%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeC-CHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~-d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++. ++...+.+.+.+.. ..++.++.+|..+...-..+.+....  ..
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~  105 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQ--SD  105 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH--hc
Confidence            46789988887552   34455566999999998 66666665555443 24789999998875432221111111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|.
T Consensus       106 g~id~li~nA  115 (271)
T 4iin_A          106 GGLSYLVNNA  115 (271)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689998874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=87.88  E-value=1.8  Score=40.54  Aligned_cols=83  Identities=17%  Similarity=0.131  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CC--CeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-ID--QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+++||=.|++.|.   ++..|++.|++|++++.++.-.+.+.+.+.. ..  ++.++.+|+.+..--+.+.+....  .
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEA--R   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHH--h
Confidence            46789999987553   3445556699999999999877766655432 12  789999998875422211111111  1


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|.+|.|-
T Consensus        85 ~g~id~lv~nA   95 (319)
T 3ioy_A           85 FGPVSILCNNA   95 (319)
T ss_dssp             TCCEEEEEECC
T ss_pred             CCCCCEEEECC
Confidence            25678998874

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=87.88  E-value=2.2  Score=39.10  Aligned_cols=81  Identities=11%  Similarity=0.184  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhh-hhhHH
Q 016715          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSH-MLSLF  209 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~-~~~~~  209 (384)
                      .+++||=.|++ |.++..+    ++.|++|++++.++.-.+.+.+.+..      ..++.++.+|+.+...-.. +..+.
T Consensus        17 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGGA-TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            46789988865 4455444    45589999999998776655554432      2478999999887542221 11111


Q ss_pred             hhhccCCCcceEeecc
Q 016715          210 ERRKSSSGFAKVVANI  225 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~Nl  225 (384)
                      +   ..+..|.||.|.
T Consensus        96 ~---~~g~id~li~~A  108 (303)
T 1yxm_A           96 D---TFGKINFLVNNG  108 (303)
T ss_dssp             H---HHSCCCEEEECC
T ss_pred             H---HcCCCCEEEECC
Confidence            1   114689998774

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=87.80  E-value=1.4  Score=40.19  Aligned_cols=83  Identities=11%  Similarity=0.087  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|.   ++..|++.|++|++++.++.-.+.+.+.+.. ..++.++.+|+.+...-..+.+....  ..+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLK--EFG  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHH--HcC
Confidence            46788888866542   3445566699999999998877766655432 24788889998775432211111111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus       105 ~iD~lvnnA  113 (270)
T 3ftp_A          105 ALNVLVNNA  113 (270)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=87.73  E-value=2  Score=39.20  Aligned_cols=81  Identities=14%  Similarity=0.144  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+.  +++.++.+|..+...-..+.+....  ..+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g~  102 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG--DDALCVPTDVTDPDSVRALFTATVE--KFGR  102 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT--SCCEEEECCTTSHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHHH--HcCC
Confidence            46788888876542   344555669999999999887777666653  4788999998875432222111111  1257


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|.
T Consensus       103 iD~lVnnA  110 (272)
T 4dyv_A          103 VDVLFNNA  110 (272)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=87.60  E-value=2.8  Score=38.35  Aligned_cols=81  Identities=19%  Similarity=0.279  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhh-hhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRS-HMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~-~~~~~~~~~~  213 (384)
                      .+++||=.|++. .++.    .|++.|++|++++.++.-.+.+.+.+..  ..++.++.+|..+...-. .+..+.+   
T Consensus        25 ~~k~vlITGasg-giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---  100 (302)
T 1w6u_A           25 QGKVAFITGGGT-GLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK---  100 (302)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH---
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH---
Confidence            467888888754 4444    4455689999999998766655444321  247899999988754221 1111111   


Q ss_pred             cCCCcceEeecc
Q 016715          214 SSSGFAKVVANI  225 (384)
Q Consensus       214 ~~~~~d~Vv~Nl  225 (384)
                      ..+..|.||.|.
T Consensus       101 ~~g~id~li~~A  112 (302)
T 1w6u_A          101 VAGHPNIVINNA  112 (302)
T ss_dssp             HTCSCSEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            225679998774

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=87.58  E-value=2.1  Score=37.61  Aligned_cols=81  Identities=14%  Similarity=0.133  Sum_probs=50.8

Q ss_pred             CCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhh-hHHhhhccC
Q 016715          142 GDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (384)
Q Consensus       142 ~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~  215 (384)
                      +++||=.|++.|   .++..|++.|++|+.++.+++-.+.+.+.+.  ...++.++.+|..+...-..+. .+.+   ..
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLE---RF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHH---HH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHH---hc
Confidence            467888887644   2344455569999999999887766555442  2347899999988754222111 1111   12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|.
T Consensus        79 g~id~li~~A   88 (235)
T 3l77_A           79 GDVDVVVANA   88 (235)
T ss_dssp             SSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689998874

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=87.56  E-value=2.1  Score=38.42  Aligned_cols=84  Identities=14%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCc----chH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .+++||=.|++    .|. ++..|++.|++|+.++.++...+.+.+.....  .++.++.+|+.+...-+.+.+....  
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE--   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH--
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH--
Confidence            46789999965    343 45666777999999998876666555544432  2689999999876533222221111  


Q ss_pred             cCCCcceEeeccC
Q 016715          214 SSSGFAKVVANIP  226 (384)
Q Consensus       214 ~~~~~d~Vv~NlP  226 (384)
                      ..+..|.+|.|..
T Consensus        84 ~~g~id~li~~Ag   96 (266)
T 3oig_A           84 QVGVIHGIAHCIA   96 (266)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCeeEEEEccc
Confidence            1246788888754

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=87.53  E-value=1.4  Score=40.16  Aligned_cols=81  Identities=12%  Similarity=0.215  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+++||=.|++. .++.    .|++.|++|++++.++.-++.+.+.+..  ..++.++.+|..+...-+.+.+....  .
T Consensus        27 ~~k~vlITGasg-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~--~  103 (286)
T 1xu9_A           27 QGKKVIVTGASK-GIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK--L  103 (286)
T ss_dssp             TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHH--H
Confidence            467899888754 4444    4455689999999998877665544332  13688899998875422211111110  1


Q ss_pred             CCCcceEeec
Q 016715          215 SSGFAKVVAN  224 (384)
Q Consensus       215 ~~~~d~Vv~N  224 (384)
                      .+..|.+|.|
T Consensus       104 ~g~iD~li~n  113 (286)
T 1xu9_A          104 MGGLDMLILN  113 (286)
T ss_dssp             HTSCSEEEEC
T ss_pred             cCCCCEEEEC
Confidence            2468888877

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=87.41  E-value=2.5  Score=38.32  Aligned_cols=82  Identities=16%  Similarity=0.204  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++.-++.+.+...  .++.++.+|..+...-..+.+....  ..+.
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g~  101 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG--KDVFVFSANLSDRKSIKQLAEVAER--EMEG  101 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHHHHHHHHHHH--HHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceEEEEeecCCHHHHHHHHHHHHH--HcCC
Confidence            46789988876542   344555669999999999887776655542  4789999998875432222211111  1246


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|.+|.|--
T Consensus       102 iD~lvnnAg  110 (266)
T 3grp_A          102 IDILVNNAG  110 (266)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998753

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=87.39  E-value=1.7  Score=40.67  Aligned_cols=95  Identities=17%  Similarity=0.224  Sum_probs=56.7

Q ss_pred             hcCCCCCEEEEEc-C-cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715          137 AAVQEGDIVLEIG-P-GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       137 l~~~~~~~VLEIG-~-G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      ..++++++||-+| + |.|..+..+++. |++|++++.+++-.+.+++.-    .-.++..  .+.++.+.....    .
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~G----a~~~~~~--~~~~~~~~~~~~----~  205 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALG----AWETIDY--SHEDVAKRVLEL----T  205 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT----CSEEEET--TTSCHHHHHHHH----T
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----CCEEEeC--CCccHHHHHHHH----h
Confidence            4567899999999 3 458888777775 899999999999888887531    1122222  122221111111    1


Q ss_pred             cCCCcceEeeccCccccHHHHHHhcccC
Q 016715          214 SSSGFAKVVANIPFNISTDVIKQLLPMG  241 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy~i~~~il~~L~~~g  241 (384)
                      ....+|+|+-+..-......+..+.++|
T Consensus       206 ~~~g~Dvvid~~g~~~~~~~~~~l~~~G  233 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQDTWLTSLDSVAPRG  233 (325)
T ss_dssp             TTCCEEEEEESSCGGGHHHHHTTEEEEE
T ss_pred             CCCCceEEEECCChHHHHHHHHHhcCCC
Confidence            2246899987765443444444444444

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=87.33  E-value=1.9  Score=38.17  Aligned_cols=82  Identities=16%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++ |.++..++    +.|++|++++.++.-.+.+.+.+.. .+++.++.+|..+...-....+....  ..
T Consensus        10 ~~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~   86 (255)
T 1fmc_A           10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS--KL   86 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCc-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH--hc
Confidence            46788887754 55555554    4588999999998776655554432 34788899998775422211111110  11


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.||.|.
T Consensus        87 ~~~d~vi~~A   96 (255)
T 1fmc_A           87 GKVDILVNNA   96 (255)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4688888774

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=87.31  E-value=2.4  Score=38.29  Aligned_cols=80  Identities=13%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~  216 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.+++-++.+.+.+.  .++.++.+|..+...-..+. .+.+   ..+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~---~~g   79 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEALE---EFG   79 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--CceEEEEcCCCCHHHHHHHHHHHHH---HcC
Confidence            4678888887654   2334455569999999999877666555442  47888999987754222111 1111   124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        80 ~iD~lvnnA   88 (263)
T 2a4k_A           80 RLHGVAHFA   88 (263)
T ss_dssp             CCCEEEEGG
T ss_pred             CCcEEEECC
Confidence            679999874

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=87.30  E-value=2.5  Score=38.08  Aligned_cols=83  Identities=16%  Similarity=0.199  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhh-hhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRS-HMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~-~~~~~~~~~~  213 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+..   ..++.++.+|..+...-. .+..+.+   
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~---   82 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD---   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH---
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHH---
Confidence            4578888887544   23344555699999999998766655544432   136888999987753221 1111111   


Q ss_pred             cCCCcceEeeccC
Q 016715          214 SSSGFAKVVANIP  226 (384)
Q Consensus       214 ~~~~~d~Vv~NlP  226 (384)
                      ..+..|.+|.|.-
T Consensus        83 ~~g~id~lv~~Ag   95 (267)
T 2gdz_A           83 HFGRLDILVNNAG   95 (267)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1246799998753

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=87.24  E-value=1.9  Score=40.28  Aligned_cols=96  Identities=10%  Similarity=0.132  Sum_probs=55.8

Q ss_pred             HhcCCCCCEEEEEc--CcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhh
Q 016715          136 AAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       136 ~l~~~~~~~VLEIG--~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      ...+.++++||-+|  .|.|..+..+++. |++|++++.+++-.+.+++. ..  . .++  |..+.++.+.....    
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~-g~--~-~~~--~~~~~~~~~~~~~~----  204 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA-GA--W-QVI--NYREEDLVERLKEI----  204 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-TC--S-EEE--ETTTSCHHHHHHHH----
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CC--C-EEE--ECCCccHHHHHHHH----
Confidence            34567899999999  3567777666664 88999999999888887763 11  1 222  22222221111111    


Q ss_pred             ccCCCcceEeeccCccccHHHHHHhcccC
Q 016715          213 KSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~i~~~il~~L~~~g  241 (384)
                      .....+|++|.|..-......+..+.++|
T Consensus       205 ~~~~~~D~vi~~~g~~~~~~~~~~l~~~G  233 (327)
T 1qor_A          205 TGGKKVRVVYDSVGRDTWERSLDCLQRRG  233 (327)
T ss_dssp             TTTCCEEEEEECSCGGGHHHHHHTEEEEE
T ss_pred             hCCCCceEEEECCchHHHHHHHHHhcCCC
Confidence            01235899998766333344444444444

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=87.22  E-value=2.6  Score=38.25  Aligned_cols=83  Identities=13%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeC-------------CHHHHHHHHHHhc-CCCCeEEEEccccccchhh
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-------------DQHMVGLVRERFA-SIDQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~-------------d~~~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~  203 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.             +++-++.+.+.+. ...++.++.+|..+...-.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            46789989977553   34555667999999998             5665555544443 2357889999988754322


Q ss_pred             hhhhHHhhhccCCCcceEeecc
Q 016715          204 HMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      .+.+....  ..+..|++|.|-
T Consensus        90 ~~~~~~~~--~~g~id~lvnnA  109 (277)
T 3tsc_A           90 KVVDDGVA--ALGRLDIIVANA  109 (277)
T ss_dssp             HHHHHHHH--HHSCCCEEEECC
T ss_pred             HHHHHHHH--HcCCCCEEEECC
Confidence            21111111  125689999874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=87.22  E-value=2.1  Score=40.83  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=37.8

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~  181 (384)
                      +...+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-.+.+++
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            345677899999999875 7777777775 87 79999999988888764

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=87.16  E-value=2.4  Score=38.65  Aligned_cols=81  Identities=10%  Similarity=0.134  Sum_probs=52.0

Q ss_pred             CEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhh-ccCCCc
Q 016715          143 DIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR-KSSSGF  218 (384)
Q Consensus       143 ~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~-~~~~~~  218 (384)
                      +++|=.|++.|   .++..|++.|++|++++.+++-++.+.+.+....++.++.+|+.+...-..   ++... ...+..
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~---~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSA---AVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHH---HHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHH---HHHHHHHHhCCC
Confidence            57888887654   334555667999999999988777666555432478889999887542211   11110 112467


Q ss_pred             ceEeeccC
Q 016715          219 AKVVANIP  226 (384)
Q Consensus       219 d~Vv~NlP  226 (384)
                      |.+|.|.-
T Consensus        99 D~lvnnAG  106 (272)
T 2nwq_A           99 RGLINNAG  106 (272)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99988753

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=87.14  E-value=2.3  Score=38.06  Aligned_cols=81  Identities=16%  Similarity=0.123  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~  214 (384)
                      .+++||=.|++. .++.    .|++.|++|++++.++.-++.+.+.+.. ..++.++.+|..+...-.... ...+   .
T Consensus        13 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   88 (260)
T 2zat_A           13 ENKVALVTASTD-GIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVN---L   88 (260)
T ss_dssp             TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---H
Confidence            467888888654 4444    4455689999999998766655444432 247888899987654221111 1111   1


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|.+|.|.
T Consensus        89 ~g~iD~lv~~A   99 (260)
T 2zat_A           89 HGGVDILVSNA   99 (260)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689998774

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=87.11  E-value=2  Score=38.81  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=56.9

Q ss_pred             CCCEEEEEcC----cchH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhh-hHHhhh
Q 016715          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML-SLFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~-~~~~~~  212 (384)
                      +|+++|=-|+    |.|. .+..|++.|++|+.++.+++..+.+.+.+...  +++.++.+|..+...-.... ...+  
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   82 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK--   82 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH--
Confidence            5788999985    4554 44567778999999999988877777766532  37888999987754322111 1111  


Q ss_pred             ccCCCcceEeeccCc
Q 016715          213 KSSSGFAKVVANIPF  227 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy  227 (384)
                       ..+..|.+|.|..+
T Consensus        83 -~~G~iD~lvnnAg~   96 (256)
T 4fs3_A           83 -DVGNIDGVYHSIAF   96 (256)
T ss_dssp             -HHCCCSEEEECCCC
T ss_pred             -HhCCCCEEEecccc
Confidence             22678999988543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=87.11  E-value=2.8  Score=37.59  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+..   ..++.++.+|..+...-..+.+....  .
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~   83 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD--L   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH--T
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH--h
Confidence            4678888887644   23344455699999999998766655544431   12788899998775422211111111  1


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+ .|.+|.|..
T Consensus        84 ~g-id~lv~~Ag   94 (260)
T 2z1n_A           84 GG-ADILVYSTG   94 (260)
T ss_dssp             TC-CSEEEECCC
T ss_pred             cC-CCEEEECCC
Confidence            24 899988753

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=87.05  E-value=2.6  Score=38.24  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCC------------HHHHHHHHHHhcC-CCCeEEEEccccccchhhh
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKD------------QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d------------~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~  204 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.+            .+-++.+.+.+.. ..++.++.+|..+...-..
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            4678999998755   2345555669999999986            4444444443332 3478899999887543222


Q ss_pred             hhhHHhhhccCCCcceEeecc
Q 016715          205 MLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      +.+....  ..+..|++|.|-
T Consensus        89 ~~~~~~~--~~g~id~lv~nA  107 (281)
T 3s55_A           89 FVAEAED--TLGGIDIAITNA  107 (281)
T ss_dssp             HHHHHHH--HHTCCCEEEECC
T ss_pred             HHHHHHH--hcCCCCEEEECC
Confidence            1111111  124689998874

>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m

Probab=87.03  E-value=0.52  Score=39.31  Aligned_cols=49  Identities=10%  Similarity=0.098  Sum_probs=40.3

Q ss_pred             CCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       334 rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      .+|.+.-+|..++  +......+++.+|+++++|+.+||.+|..+|...++
T Consensus        24 ~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~   74 (146)
T 3u5c_S           24 GNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQ   74 (146)
T ss_dssp             SSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHT
T ss_pred             CCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHH
Confidence            3566677777765  455567889999999999999999999999998875

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=86.98  E-value=1.7  Score=41.64  Aligned_cols=47  Identities=26%  Similarity=0.333  Sum_probs=38.4

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~  181 (384)
                      +...+.++++||=+|+|. |.++..+++. |+ +|+++|.+++-++.+++
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            445677899999999975 8888888776 87 89999999988887764

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=86.97  E-value=2.1  Score=38.76  Aligned_cols=77  Identities=19%  Similarity=0.186  Sum_probs=50.7

Q ss_pred             CEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh-HHhhhccCCCc
Q 016715          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS-LFERRKSSSGF  218 (384)
Q Consensus       143 ~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~-~~~~~~~~~~~  218 (384)
                      ++||=-|++.|.   ++..|++.|++|+.+|.+++..+.+.+   ..+++..+.+|..+...-+.+.+ ..+   ..+..
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~~~---~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK---ERPNLFYFHGDVADPLTLKKFVEYAME---KLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT---TCTTEEEEECCTTSHHHHHHHHHHHHH---HHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hcCCEEEEEecCCCHHHHHHHHHHHHH---HcCCC
Confidence            577877877663   345566679999999999876655443   33578899999887543222211 111   22678


Q ss_pred             ceEeecc
Q 016715          219 AKVVANI  225 (384)
Q Consensus       219 d~Vv~Nl  225 (384)
                      |++|.|-
T Consensus        77 DiLVNNA   83 (247)
T 3ged_A           77 DVLVNNA   83 (247)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            9999874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=86.95  E-value=3.3  Score=36.98  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhh---hhhhHHhhh
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRS---HMLSLFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~---~~~~~~~~~  212 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+..  ..++.++.+|....+..+   .+..+.+  
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--   88 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV--   88 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH--
Confidence            4678998887654   23445556699999999998877766555432  237888999984332221   1111111  


Q ss_pred             ccCCCcceEeecc
Q 016715          213 KSSSGFAKVVANI  225 (384)
Q Consensus       213 ~~~~~~d~Vv~Nl  225 (384)
                       ..+..|.+|.|.
T Consensus        89 -~~g~id~lv~nA  100 (252)
T 3f1l_A           89 -NYPRLDGVLHNA  100 (252)
T ss_dssp             -HCSCCSEEEECC
T ss_pred             -hCCCCCEEEECC
Confidence             235789999874

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=86.88  E-value=2.4  Score=38.51  Aligned_cols=83  Identities=10%  Similarity=0.108  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+..-.+.+.+.+.  ...++.++.+|+.+...-..+.+....  ..
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~  103 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK--EF  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence            46789999976542   344455568999999999876655544432  124789999998875432211111111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|-
T Consensus       104 g~id~lv~nA  113 (277)
T 4fc7_A          104 GRIDILINCA  113 (277)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=86.85  E-value=2.1  Score=39.56  Aligned_cols=83  Identities=13%  Similarity=0.229  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CC---CeEEEEccccccchhhhhh-hHHhhh
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-ID---QLKVLQEDFVKCHIRSHML-SLFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~---~v~~~~gD~~~~~~~~~~~-~~~~~~  212 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.+++-++.+.+.+.. ..   ++.++.+|+.+...-.... .+.+  
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA--  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH--
Confidence            4678888887544   23344455699999999998776665554432 22   6889999988754222111 1111  


Q ss_pred             ccCCCcceEeeccC
Q 016715          213 KSSSGFAKVVANIP  226 (384)
Q Consensus       213 ~~~~~~d~Vv~NlP  226 (384)
                       ..+..|++|.|.-
T Consensus       103 -~~g~iD~lvnnAG  115 (297)
T 1xhl_A          103 -KFGKIDILVNNAG  115 (297)
T ss_dssp             -HHSCCCEEEECCC
T ss_pred             -hcCCCCEEEECCC
Confidence             1246899998753

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=86.82  E-value=3  Score=36.79  Aligned_cols=80  Identities=13%  Similarity=0.152  Sum_probs=49.9

Q ss_pred             CCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHh-cC-CCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715          142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERF-AS-IDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~-~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~  214 (384)
                      +++||=.|++ |.++..    |++.|++|++++.++.-.+.+.+.+ .. .+++.++.+|..+...-..+. .+.+   .
T Consensus         2 ~k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~   77 (250)
T 2cfc_A            2 SRVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATME---Q   77 (250)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---H
Confidence            4578888865 444444    4456899999999987776665554 22 237889999988754222111 1111   1


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|.||.|.
T Consensus        78 ~~~id~li~~A   88 (250)
T 2cfc_A           78 FGAIDVLVNNA   88 (250)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCCCEEEECC
Confidence            24679998875

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=86.81  E-value=2.3  Score=38.57  Aligned_cols=83  Identities=17%  Similarity=0.108  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeC-CHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~-d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++. ++...+.+.+.+.. ..++.++.+|+.+...-+.+.+....  ..
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~--~~  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE--RW  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence            46788888876542   34455566999999888 66666655554432 34788999999875432222211111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|-
T Consensus       105 g~id~lv~nA  114 (269)
T 4dmm_A          105 GRLDVLVNNA  114 (269)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689998874

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=86.80  E-value=2.3  Score=39.67  Aligned_cols=82  Identities=15%  Similarity=0.163  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCC------------HHHHHHHHHHhc-CCCCeEEEEccccccchhhh
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFA-SIDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d------------~~~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~~  204 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.+|.+            .+-++.+.+.+. ...++.++.+|..+...-..
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            46789988887552   445556679999999876            554444444333 23478999999887543221


Q ss_pred             hh-hHHhhhccCCCcceEeecc
Q 016715          205 ML-SLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       205 ~~-~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      +. .+.+   ..+..|++|.|-
T Consensus       125 ~~~~~~~---~~g~iD~lVnnA  143 (317)
T 3oec_A          125 VVDEALA---EFGHIDILVSNV  143 (317)
T ss_dssp             HHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHH---HcCCCCEEEECC
Confidence            11 1111   125789999874

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=86.79  E-value=2.9  Score=37.87  Aligned_cols=79  Identities=20%  Similarity=0.288  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh-HHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS-LFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~-~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+   +++.++.+|..+...-..+.+ +.+   ..+
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~---~~g   81 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETIR---RFG   81 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCeEEEcCCCCHHHHHHHHHHHHH---HcC
Confidence            4678998887644   233445556999999999987766555443   357888999877542221111 111   124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        82 ~iD~lv~nA   90 (270)
T 1yde_A           82 RLDCVVNNA   90 (270)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689998774

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=86.78  E-value=2.4  Score=37.65  Aligned_cols=83  Identities=16%  Similarity=0.188  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeC-CHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEK-DQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~-d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++.|   .++..|++.|++|++++. ++.-.+.+.+.+.. ..++.++.+|..+...-..+.+....  ..
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~   80 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVD--VF   80 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence            3567887776543   233444556899999998 87766655544432 24788899998775422211111111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|.
T Consensus        81 g~id~lv~nA   90 (246)
T 2uvd_A           81 GQVDILVNNA   90 (246)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689998874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=86.77  E-value=3.5  Score=38.72  Aligned_cols=45  Identities=31%  Similarity=0.477  Sum_probs=37.9

Q ss_pred             cCCCCCEEEEEcCcc-hHHHHHHHHc--CCcEEEEeCCHHHHHHHHHH
Q 016715          138 AVQEGDIVLEIGPGT-GSLTNVLLNA--GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~-G~lt~~La~~--~~~V~avE~d~~~~~~a~~~  182 (384)
                      .+.++++||-+|+|. |.++..+++.  +.+|+++|.+++-.+.+++.
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l  215 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV  215 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            567899999999986 8888888875  67999999999988888764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=86.76  E-value=2  Score=40.21  Aligned_cols=95  Identities=21%  Similarity=0.307  Sum_probs=58.1

Q ss_pred             cCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          138 AVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       138 ~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+.++++||-+|+  |.|.++..+++. |++|++++.+++-.+.+++.    +.-.++..+  +-++.+.....    ..
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~~~~~~~--~~~~~~~~~~~----~~  214 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GAEYLINAS--KEDILRQVLKF----TN  214 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSEEEETT--TSCHHHHHHHH----TT
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCcEEEeCC--CchHHHHHHHH----hC
Confidence            5678999999994  457777777765 88999999999888877653    211233221  11221111111    11


Q ss_pred             CCCcceEeeccCccccHHHHHHhcccCC
Q 016715          215 SSGFAKVVANIPFNISTDVIKQLLPMGD  242 (384)
Q Consensus       215 ~~~~d~Vv~NlPy~i~~~il~~L~~~g~  242 (384)
                      ...+|+|+-+..-......+..+.++|.
T Consensus       215 ~~g~D~vid~~g~~~~~~~~~~l~~~G~  242 (334)
T 3qwb_A          215 GKGVDASFDSVGKDTFEISLAALKRKGV  242 (334)
T ss_dssp             TSCEEEEEECCGGGGHHHHHHHEEEEEE
T ss_pred             CCCceEEEECCChHHHHHHHHHhccCCE
Confidence            2468999887665445555666665553

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=86.57  E-value=0.24  Score=47.82  Aligned_cols=77  Identities=6%  Similarity=0.053  Sum_probs=45.0

Q ss_pred             CEEEEEcCcchHHHHHHHHc------------C------CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcc---ccc
Q 016715          143 DIVLEIGPGTGSLTNVLLNA------------G------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQED---FVK  198 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~------------~------~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD---~~~  198 (384)
                      -+|+|+||++|..|..+...            +      .+|+..|+-......+-+.+...   .+..++.|.   +..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            57999999999988766543            1      25666665555555444443210   022333332   222


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccccH
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                      -.++            .+.+|.|++|...+|.+
T Consensus       133 rlfp------------~~S~d~v~Ss~aLHWls  153 (359)
T 1m6e_X          133 RLFP------------RNTLHFIHSSYSLMWLS  153 (359)
T ss_dssp             CCSC------------TTCBSCEEEESCTTBCS
T ss_pred             ccCC------------CCceEEEEehhhhhhcc
Confidence            2222            36789999998887754

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=86.50  E-value=1.9  Score=39.18  Aligned_cols=82  Identities=15%  Similarity=0.086  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+  ..++.++.+|..+...-..+.+....  ..+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~   85 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALIDFTID--TFGR   85 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHHHHHH--HcCC
Confidence            4678998887655   344556667999999999987666665555  24788899998775432222111111  1246


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|++|.|--
T Consensus        86 id~lv~nAg   94 (271)
T 3tzq_B           86 LDIVDNNAA   94 (271)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899988743

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=86.49  E-value=1.7  Score=41.79  Aligned_cols=49  Identities=22%  Similarity=0.300  Sum_probs=40.0

Q ss_pred             HHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      +....+.+|++||-+|+|. |.++..+++. |+ +|+++|.+++-++.+++.
T Consensus       178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l  229 (398)
T 1kol_A          178 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ  229 (398)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc
Confidence            3445678899999999976 8888888875 77 799999999988888653

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=86.45  E-value=3.2  Score=36.52  Aligned_cols=82  Identities=16%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhh-hHHhhhc
Q 016715          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHML-SLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~-~~~~~~~  213 (384)
                      .+++||=.|++ |.++..+    ++.|++|++++.++.-.+.+.+.+..  ..++.++.+|..+...-.... .+.+   
T Consensus         6 ~~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---   81 (248)
T 2pnf_A            6 QGKVSLVTGST-RGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYN---   81 (248)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH---
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHH---
Confidence            45678877765 4555444    45589999999998766655544321  247888999987653222111 1111   


Q ss_pred             cCCCcceEeeccC
Q 016715          214 SSSGFAKVVANIP  226 (384)
Q Consensus       214 ~~~~~d~Vv~NlP  226 (384)
                      ..+..|.||.|..
T Consensus        82 ~~~~~d~vi~~Ag   94 (248)
T 2pnf_A           82 LVDGIDILVNNAG   94 (248)
T ss_dssp             HSSCCSEEEECCC
T ss_pred             hcCCCCEEEECCC
Confidence            1246899987743

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=86.45  E-value=2.9  Score=39.13  Aligned_cols=95  Identities=19%  Similarity=0.261  Sum_probs=57.5

Q ss_pred             hcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715          137 AAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       137 l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      ..+.++++||-+|+  |.|..+..++.. |++|++++.+++-.+.+++. ..  . .++  |..+.++.+......    
T Consensus       141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-g~--~-~~~--d~~~~~~~~~i~~~~----  210 (333)
T 1wly_A          141 HKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL-GC--H-HTI--NYSTQDFAEVVREIT----  210 (333)
T ss_dssp             SCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-TC--S-EEE--ETTTSCHHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC--C-EEE--ECCCHHHHHHHHHHh----
Confidence            45678899999995  568877777664 88999999999888777653 11  1 122  222222221111111    


Q ss_pred             cCCCcceEeeccCccccHHHHHHhcccC
Q 016715          214 SSSGFAKVVANIPFNISTDVIKQLLPMG  241 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy~i~~~il~~L~~~g  241 (384)
                      ....+|++|.|..-......+..+.++|
T Consensus       211 ~~~~~d~vi~~~g~~~~~~~~~~l~~~G  238 (333)
T 1wly_A          211 GGKGVDVVYDSIGKDTLQKSLDCLRPRG  238 (333)
T ss_dssp             TTCCEEEEEECSCTTTHHHHHHTEEEEE
T ss_pred             CCCCCeEEEECCcHHHHHHHHHhhccCC
Confidence            1246899998766544455555555544

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=86.42  E-value=3.1  Score=36.78  Aligned_cols=85  Identities=15%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhh-cc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR-KS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~-~~  214 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+...  +++.++..|....+..+ ...++... ..
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~-~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQ-YRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHH-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHH-HHHHHHHHHHh
Confidence            4678888887654   234455556999999999988877776665432  46788888874333221 11111100 11


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|.+|.|.-
T Consensus        92 ~g~id~lv~nAg  103 (247)
T 3i1j_A           92 FGRLDGLLHNAS  103 (247)
T ss_dssp             HSCCSEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            246899998753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=86.33  E-value=1.9  Score=40.82  Aligned_cols=49  Identities=29%  Similarity=0.415  Sum_probs=39.7

Q ss_pred             HHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      ++...+.++++||-+|+|. |.++..+++. |++|+++|.+++-.+.+++.
T Consensus       161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  211 (352)
T 1e3j_A          161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC  211 (352)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh
Confidence            3455778899999999875 7777777775 88999999999988888753

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=86.21  E-value=3.7  Score=37.47  Aligned_cols=83  Identities=17%  Similarity=0.187  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeC-CHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~-d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++. +++..+.+.+.+..  ..++.++.+|..+...-..+.+....  .
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~  101 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVAD--R  101 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHH--H
Confidence            46789999976542   34455566999999998 66666665555543  24788999998875432222211111  2


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|++|.|-
T Consensus       102 ~g~iD~lv~nA  112 (281)
T 3v2h_A          102 FGGADILVNNA  112 (281)
T ss_dssp             TSSCSEEEECC
T ss_pred             CCCCCEEEECC
Confidence            25789999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.17  E-value=1.4  Score=42.28  Aligned_cols=48  Identities=23%  Similarity=0.231  Sum_probs=39.3

Q ss_pred             HHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~  181 (384)
                      +..+.+.+|++||-+|+|. |.++..+++. |++|++++.+++-.+.+++
T Consensus       187 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          187 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3445678899999999985 7777777775 8899999999988888875

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=86.16  E-value=2.8  Score=38.50  Aligned_cols=82  Identities=15%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHH-HHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQH-MVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~-~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~  214 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+.. ..+.+.+.... ..++.++.+|..+...-..+. .+.+   .
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVR---Q  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH---H
Confidence            46789999976552   34455566999999998754 34444443333 247899999988754322111 1111   1


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|++|.|.
T Consensus       123 ~g~iD~lvnnA  133 (291)
T 3ijr_A          123 LGSLNILVNNV  133 (291)
T ss_dssp             HSSCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999874

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=86.11  E-value=2.6  Score=37.71  Aligned_cols=82  Identities=13%  Similarity=0.144  Sum_probs=49.5

Q ss_pred             CCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHH--HHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715          142 GDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHM--VGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (384)
Q Consensus       142 ~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~--~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~  214 (384)
                      ++++|=.|++.|   .++..|++.|++|+.++.++.-  ++.+.+.+.. ..++.++.+|..+...-+.+. .+.+   .
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~   78 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAE---K   78 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---H
Confidence            457888887644   2334455569999999988765  5544444432 247889999988754222111 1111   1


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|++|.|.-
T Consensus        79 ~g~iD~lv~nAg   90 (258)
T 3a28_C           79 LGGFDVLVNNAG   90 (258)
T ss_dssp             HTCCCEEEECCC
T ss_pred             hCCCCEEEECCC
Confidence            246899998743

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=86.09  E-value=2.5  Score=39.83  Aligned_cols=47  Identities=30%  Similarity=0.400  Sum_probs=37.1

Q ss_pred             HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      ....+ ++++||-+|+|. |.++..+++. |+ +|++++.+++-.+.+++.
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~  211 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV  211 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            34456 889999999974 7777777765 88 999999999888888753

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=86.06  E-value=2.9  Score=37.52  Aligned_cols=80  Identities=23%  Similarity=0.245  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+.  .++.++.+|..+...-.. +..+.+   ..+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~---~~g   85 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE--NGGFAVEVDVTKRASVDAAMQKAID---ALG   85 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT--TCCEEEECCTTCHHHHHHHHHHHHH---HHT
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cCCeEEEEeCCCHHHHHHHHHHHHH---HcC
Confidence            4678998887643   2333445568999999999876665544432  267888899876432211 111111   124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        86 ~iD~lv~~A   94 (263)
T 3ak4_A           86 GFDLLCANA   94 (263)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689998874

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=85.99  E-value=1.8  Score=37.80  Aligned_cols=71  Identities=20%  Similarity=0.187  Sum_probs=46.4

Q ss_pred             EEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          144 IVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      +|+=+|+  |.++..++    +.|.+|+.+|.|++.++.+.+..    ++.++.||+.+...-..        ......|
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l~~--------a~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----KATIIHGDGSHKEILRD--------AEVSKND   67 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHHHH--------HTCCTTC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHHHh--------cCcccCC
Confidence            4666676  55555554    44889999999999888766542    56789999887432110        0124567


Q ss_pred             eEeeccCcc
Q 016715          220 KVVANIPFN  228 (384)
Q Consensus       220 ~Vv~NlPy~  228 (384)
                      .|+...+-.
T Consensus        68 ~vi~~~~~d   76 (218)
T 3l4b_C           68 VVVILTPRD   76 (218)
T ss_dssp             EEEECCSCH
T ss_pred             EEEEecCCc
Confidence            887766653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=85.97  E-value=0.64  Score=45.82  Aligned_cols=64  Identities=25%  Similarity=0.386  Sum_probs=44.6

Q ss_pred             CcccCCHHHH--------HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc----C---CcEEEEeCCHHHHHHHHHHhc
Q 016715          121 QHYMLNSEIN--------DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G---ATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       121 q~fl~~~~~~--------~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~----~---~~V~avE~d~~~~~~a~~~~~  184 (384)
                      ..|.|.|++-        ..+++.......-.|+|+|+|.|.+..-+++.    +   .+++.||+|+.+.+.-++++.
T Consensus       109 GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          109 SDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             -CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            5799987653        23333322222468999999999999887653    2   379999999998887777664

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.95  E-value=2.9  Score=37.83  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHh---cC-CCCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERF---AS-IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~---~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-++.+.+.+   .. ..++.++.+|..+...-....+....  
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--   82 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG--   82 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH--
Confidence            3567888887644   233445556999999999987776665554   22 23688899998775422211111111  


Q ss_pred             cCCCcceEeeccC
Q 016715          214 SSSGFAKVVANIP  226 (384)
Q Consensus       214 ~~~~~d~Vv~NlP  226 (384)
                      ..+..|++|.|.-
T Consensus        83 ~~g~id~lv~~Ag   95 (278)
T 1spx_A           83 KFGKLDILVNNAG   95 (278)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1246899998753

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=85.93  E-value=3.2  Score=37.31  Aligned_cols=83  Identities=12%  Similarity=0.117  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEE-eCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~av-E~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++.|.   ++..|++.|++|+.+ +.++...+.+.+.+.. ..++.++.+|..+...-..+.+....  ..
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDE--TF   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence            46788888876442   334455569999886 8888777766665543 24789999998875432221111111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|-
T Consensus        81 g~id~lv~nA   90 (258)
T 3oid_A           81 GRLDVFVNNA   90 (258)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4679999875

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=85.83  E-value=2.9  Score=37.80  Aligned_cols=82  Identities=17%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhh-HHhhh
Q 016715          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS-LFERR  212 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~-~~~~~  212 (384)
                      .+++||=.|++ |.++.    .|++.|++|++++.++.-++.+.+.+...   .++.++.+|+.+...-..+.+ +.+  
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--  107 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS--  107 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH--
Confidence            46788888865 44444    44456899999999987766655544321   357888999877542221111 111  


Q ss_pred             ccCCCcceEeeccC
Q 016715          213 KSSSGFAKVVANIP  226 (384)
Q Consensus       213 ~~~~~~d~Vv~NlP  226 (384)
                       ..+..|.||.|..
T Consensus       108 -~~g~iD~vi~~Ag  120 (279)
T 1xg5_A          108 -QHSGVDICINNAG  120 (279)
T ss_dssp             -HHCCCSEEEECCC
T ss_pred             -hCCCCCEEEECCC
Confidence             1246899987753

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=85.72  E-value=2.9  Score=37.35  Aligned_cols=80  Identities=15%  Similarity=0.192  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~  215 (384)
                      .+++||=.|++.| ++.    .|++.|++|++++.++.-.+.+.+.+  ..++.++.+|..+...-..+. .+.+   ..
T Consensus         5 ~~k~vlVTGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~---~~   78 (253)
T 1hxh_A            5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQR---RL   78 (253)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence            4567888886544 444    44456899999999987766655554  247888999987754222111 1111   12


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|.+|.|.-
T Consensus        79 g~id~lv~~Ag   89 (253)
T 1hxh_A           79 GTLNVLVNNAG   89 (253)
T ss_dssp             CSCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46799988753

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=85.71  E-value=2.5  Score=37.96  Aligned_cols=83  Identities=10%  Similarity=0.056  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEE-eCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~av-E~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.+ +.+++..+.+.+.+.. ..++.++.+|..+...-..+.+....  ..
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD--KF   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--Hh
Confidence            46789999987652   344555669999988 6666665555554443 34788999998875432222211111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|-
T Consensus        85 g~id~lv~nA   94 (259)
T 3edm_A           85 GEIHGLVHVA   94 (259)
T ss_dssp             CSEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            4678888774

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=85.60  E-value=4  Score=37.37  Aligned_cols=60  Identities=12%  Similarity=0.101  Sum_probs=41.6

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEe-CCHHHHHHHHHHhc--CCCCeEEEEccccccc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFA--SIDQLKVLQEDFVKCH  200 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE-~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~  200 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++ .++.-++.+.+.+.  ...++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcc
Confidence            46788888876542   3344455699999999 99877666655543  2247889999988765

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=85.59  E-value=3.5  Score=37.50  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++ |.++..+++    .|++|++++.++.-.+.+.+.+.. ..++.++.+|+.+...-..+.+....  ..
T Consensus        43 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~--~~  119 (285)
T 2c07_A           43 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT--EH  119 (285)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH--HC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHH--hc
Confidence            35788888865 555555544    488999999887766665555443 24788999998875422211111110  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.||.|.
T Consensus       120 ~~id~li~~A  129 (285)
T 2c07_A          120 KNVDILVNNA  129 (285)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4679998874

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=85.51  E-value=1.6  Score=39.90  Aligned_cols=83  Identities=17%  Similarity=0.238  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++.-++.+.+.+..  ...+.++.+|+.+...-..+.+....  ..
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~  109 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA--EF  109 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence            46788888876542   3344555699999999998877766655432  12458899998876432222211111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|.
T Consensus       110 g~iD~lvnnA  119 (281)
T 4dry_A          110 ARLDLLVNNA  119 (281)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=85.29  E-value=3.3  Score=37.40  Aligned_cols=81  Identities=11%  Similarity=0.117  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeC-CHHHHHHHHHHhcC--CCCeEEEEcccccc----chhhhhh-hH
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEK-DQHMVGLVRERFAS--IDQLKVLQEDFVKC----HIRSHML-SL  208 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~-d~~~~~~a~~~~~~--~~~v~~~~gD~~~~----~~~~~~~-~~  208 (384)
                      .+++||=.|++. .++..    |++.|++|+.++. ++.-.+.+.+.+..  ..++.++.+|..+.    ..-..+. .+
T Consensus        10 ~~k~~lVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           10 ECPAAVITGGAR-RIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             -CCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence            356788777664 44444    4456899999999 87766655554432  24788999998876    3222111 11


Q ss_pred             HhhhccCCCcceEeecc
Q 016715          209 FERRKSSSGFAKVVANI  225 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~Nl  225 (384)
                      .+   ..+..|++|.|-
T Consensus        89 ~~---~~g~id~lv~nA  102 (276)
T 1mxh_A           89 FR---AFGRCDVLVNNA  102 (276)
T ss_dssp             HH---HHSCCCEEEECC
T ss_pred             HH---hcCCCCEEEECC
Confidence            11   124689998874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=85.20  E-value=4.6  Score=38.93  Aligned_cols=45  Identities=29%  Similarity=0.439  Sum_probs=37.1

Q ss_pred             cCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          138 AVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      .+.+|++||=+|+|. |.++..+++. |+ +|+++|.++.-.+.+++.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            467899999999875 7777777765 88 899999999988888764

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=85.20  E-value=3.9  Score=36.75  Aligned_cols=81  Identities=17%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-.+.+.+.+.  .++.++.+|..+...-.... .+.+   ..+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~---~~g   80 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAVT---AFG   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh--cCceEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            4678888887654   2334455669999999999877666555443  25788889987654222111 1111   124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.+|.|.-
T Consensus        81 ~iD~lv~~Ag   90 (260)
T 1nff_A           81 GLHVLVNNAG   90 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899988743

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=85.06  E-value=3.1  Score=37.23  Aligned_cols=81  Identities=16%  Similarity=0.108  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.+++-.+.+.+.+  ..++.++.+|..+...-.... .+.+   ..+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~---~~g   78 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYARE---EFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHH---HcC
Confidence            4678888887544   233445556999999999987666554443  136888889987653221111 1111   124


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|.+|.|.-
T Consensus        79 ~iD~lv~nAg   88 (254)
T 1hdc_A           79 SVDGLVNNAG   88 (254)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=85.05  E-value=5.4  Score=31.42  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=44.8

Q ss_pred             CCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +.+|+=+|+|  .++..    |.+.|.+|+.+|.++..++.+++..    ++.++.+|..+...-.      .  .....
T Consensus         4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l~------~--~~~~~   69 (140)
T 1lss_A            4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLE------D--AGIED   69 (140)
T ss_dssp             -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHH------H--TTTTT
T ss_pred             CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHHH------H--cCccc
Confidence            4578888875  44433    3445889999999998777665432    4567788875432110      0  01245


Q ss_pred             cceEeeccCc
Q 016715          218 FAKVVANIPF  227 (384)
Q Consensus       218 ~d~Vv~NlPy  227 (384)
                      .|.|+...|.
T Consensus        70 ~d~vi~~~~~   79 (140)
T 1lss_A           70 ADMYIAVTGK   79 (140)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEEeeCC
Confidence            7888877664

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=85.03  E-value=2.9  Score=37.25  Aligned_cols=81  Identities=15%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeC-CHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhc
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEK-DQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~-d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~  213 (384)
                      .+++||=.|++ |.++..    |++.|++|++++. ++.-.+.+.+.+.. ..++.++.+|+.+...-..+. .+.+   
T Consensus         6 ~~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---   81 (261)
T 1gee_A            6 EGKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK---   81 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH---
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH---
Confidence            35688888865 444444    4456899999999 77665555444432 246888999988754221111 1111   


Q ss_pred             cCCCcceEeecc
Q 016715          214 SSSGFAKVVANI  225 (384)
Q Consensus       214 ~~~~~d~Vv~Nl  225 (384)
                      ..+..|.||.|.
T Consensus        82 ~~g~id~li~~A   93 (261)
T 1gee_A           82 EFGKLDVMINNA   93 (261)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            114679998874

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=84.90  E-value=4.1  Score=36.77  Aligned_cols=83  Identities=16%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHh-c-CCCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERF-A-SIDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~-~-~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~  214 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-++.+.+.+ . ...++.++.+|..+...-.... .+.+   .
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE---K   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence            4678888887644   233444556999999999987666554443 1 1246888899987753221111 1111   1


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|.+|.|.-
T Consensus        97 ~g~iD~lvnnAg  108 (267)
T 1vl8_A           97 FGKLDTVVNAAG  108 (267)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            246899998753

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=84.59  E-value=2  Score=39.13  Aligned_cols=82  Identities=10%  Similarity=0.094  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~~  216 (384)
                      +|+.+|=-|++.|.   .+..|++.|++|+.++.+.+-.+.+.+.....+++..+.+|..+...-.. +....+   ..+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~---~~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIA---TFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHH---HhC
Confidence            57889999987764   34566677999999998765444444333334578899999877543221 112222   226


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        83 ~iDiLVNnA   91 (258)
T 4gkb_A           83 RLDGLVNNA   91 (258)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=84.58  E-value=2.9  Score=39.60  Aligned_cols=95  Identities=20%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             HhcCCCCCEEEEEc-C-cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhh
Q 016715          136 AAAVQEGDIVLEIG-P-GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       136 ~l~~~~~~~VLEIG-~-G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      ...++++++||-+| + |.|.++..+++. |++|++++.+++-.+.+++.-    .-.++..  .+.++.+.....    
T Consensus       162 ~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lG----a~~~~~~--~~~~~~~~~~~~----  231 (353)
T 4dup_A          162 MAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLG----AKRGINY--RSEDFAAVIKAE----  231 (353)
T ss_dssp             TTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT----CSEEEET--TTSCHHHHHHHH----
T ss_pred             hcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC----CCEEEeC--CchHHHHHHHHH----
Confidence            34567899999995 3 457777777765 889999999999888887641    1122222  122222111111    


Q ss_pred             ccCCCcceEeeccCccccHHHHHHhcccC
Q 016715          213 KSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~i~~~il~~L~~~g  241 (384)
                       ....+|+|+-+..-......+..+.++|
T Consensus       232 -~~~g~Dvvid~~g~~~~~~~~~~l~~~G  259 (353)
T 4dup_A          232 -TGQGVDIILDMIGAAYFERNIASLAKDG  259 (353)
T ss_dssp             -HSSCEEEEEESCCGGGHHHHHHTEEEEE
T ss_pred             -hCCCceEEEECCCHHHHHHHHHHhccCC
Confidence             1356899987765444445555555544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=84.51  E-value=4.3  Score=39.62  Aligned_cols=73  Identities=21%  Similarity=0.349  Sum_probs=48.3

Q ss_pred             CCEEEEEcCcc-hHHH-HHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          142 GDIVLEIGPGT-GSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       142 ~~~VLEIG~G~-G~lt-~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      +++|+=+|+|. |... ..|...|..|++||.|+..++.++..     ++.++.||+.+...-..        ......+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~-----g~~vi~GDat~~~~L~~--------agi~~A~   70 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLES--------AGAAKAE   70 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT-----TCCCEESCTTCHHHHHH--------TTTTTCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC-----CCeEEEcCCCCHHHHHh--------cCCCccC
Confidence            45688888864 3222 23334588999999999999988743     56789999988643211        1124567


Q ss_pred             eEeeccCc
Q 016715          220 KVVANIPF  227 (384)
Q Consensus       220 ~Vv~NlPy  227 (384)
                      .||..++-
T Consensus        71 ~viv~~~~   78 (413)
T 3l9w_A           71 VLINAIDD   78 (413)
T ss_dssp             EEEECCSS
T ss_pred             EEEECCCC
Confidence            77766554

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=84.48  E-value=3.1  Score=37.23  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++++|=.|++. .++..    |++.|++|+.++.++.-.+.+.+.+.. ..++.++.+|..+...-..+.+.... ...
T Consensus         4 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~~   81 (260)
T 2qq5_A            4 NGQVCVVTGASR-GIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDR-EQQ   81 (260)
T ss_dssp             TTCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHH-HHT
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHH-hcC
Confidence            356788888654 44444    445699999999998776655544432 24688899998875422211111110 012


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|-
T Consensus        82 g~id~lvnnA   91 (260)
T 2qq5_A           82 GRLDVLVNNA   91 (260)
T ss_dssp             TCCCEEEECC
T ss_pred             CCceEEEECC
Confidence            5679999886

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=84.41  E-value=3.7  Score=39.00  Aligned_cols=96  Identities=14%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             HHhcCCCCCEEEEEc--CcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhh
Q 016715          135 AAAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG--~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      +...+.++++||-+|  .|.|..+..+++. |++|++++.+++-.+.+++.    +.-.++..+  +-++.+.    +..
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~~~~~~~--~~~~~~~----~~~  226 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL----GCDRPINYK--TEPVGTV----LKQ  226 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSEEEETT--TSCHHHH----HHH
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc----CCcEEEecC--ChhHHHH----HHH
Confidence            344677899999999  3568888888775 88999999998888887752    111233222  1111111    110


Q ss_pred             hccCCCcceEeeccCccccHHHHHHhcccC
Q 016715          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g  241 (384)
                       .....+|+|+-+..-......+..+.++|
T Consensus       227 -~~~~g~D~vid~~g~~~~~~~~~~l~~~G  255 (362)
T 2c0c_A          227 -EYPEGVDVVYESVGGAMFDLAVDALATKG  255 (362)
T ss_dssp             -HCTTCEEEEEECSCTHHHHHHHHHEEEEE
T ss_pred             -hcCCCCCEEEECCCHHHHHHHHHHHhcCC
Confidence             01246899987765433344455555544

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=84.40  E-value=1.7  Score=38.96  Aligned_cols=81  Identities=15%  Similarity=0.175  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++.-.+.+.+.+  ..++.++.+|..+...-..+.+....  ..+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~   81 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL--GAAVRFRNADVTNEADATAALAFAKQ--EFGH   81 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence            46788988887552   34455566999999999876655544433  24788999998875432222211111  1246


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|.+|.|-
T Consensus        82 id~lv~nA   89 (257)
T 3tpc_A           82 VHGLVNCA   89 (257)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89998874

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=84.31  E-value=4.6  Score=35.49  Aligned_cols=81  Identities=10%  Similarity=0.087  Sum_probs=49.9

Q ss_pred             CCEEEEEcCcchHHHHHH----HHcCC-------cEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHH
Q 016715          142 GDIVLEIGPGTGSLTNVL----LNAGA-------TVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~L----a~~~~-------~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      +++||=.|++ |.++..+    ++.|+       +|++++.++.-.+.+.+.+.. ..++.++.+|+.+...-.......
T Consensus         2 ~k~vlITGas-ggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAG-KGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTT-SHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence            3567777764 4455444    44588       899999998877766655543 247889999988754222111111


Q ss_pred             hhhccCCCcceEeecc
Q 016715          210 ERRKSSSGFAKVVANI  225 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~Nl  225 (384)
                      ..  ..+..|.||.|.
T Consensus        81 ~~--~~g~id~li~~A   94 (244)
T 2bd0_A           81 VE--RYGHIDCLVNNA   94 (244)
T ss_dssp             HH--HTSCCSEEEECC
T ss_pred             HH--hCCCCCEEEEcC
Confidence            11  124689998774

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=84.27  E-value=1.7  Score=40.55  Aligned_cols=83  Identities=14%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCC----------HHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKD----------QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d----------~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++.+          ....+.+.+.+.. ..++.++.+|..+...-..+.
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~  105 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLI  105 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            5678998887654   2345556669999999987          4444444444432 347888899988754322211


Q ss_pred             hHHhhhccCCCcceEeecc
Q 016715          207 SLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      +....  ..+..|++|.|-
T Consensus       106 ~~~~~--~~g~iD~lv~nA  122 (322)
T 3qlj_A          106 QTAVE--TFGGLDVLVNNA  122 (322)
T ss_dssp             HHHHH--HHSCCCEEECCC
T ss_pred             HHHHH--HcCCCCEEEECC
Confidence            11111  124689998774

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=84.26  E-value=2.6  Score=39.91  Aligned_cols=96  Identities=20%  Similarity=0.220  Sum_probs=56.5

Q ss_pred             hcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715          137 AAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       137 l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      ..+.++++||-+|+  |.|..+..+++. |++|++++.+++-++.+++. ..  . .++  |..+.++.+.....    .
T Consensus       158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-g~--~-~~~--~~~~~~~~~~~~~~----~  227 (354)
T 2j8z_A          158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL-GA--A-AGF--NYKKEDFSEATLKF----T  227 (354)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-TC--S-EEE--ETTTSCHHHHHHHH----T
T ss_pred             cCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CC--c-EEE--ecCChHHHHHHHHH----h
Confidence            45678999999984  567777766664 88999999999888887543 21  1 222  22222221111111    1


Q ss_pred             cCCCcceEeeccCccccHHHHHHhcccCC
Q 016715          214 SSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (384)
Q Consensus       214 ~~~~~d~Vv~NlPy~i~~~il~~L~~~g~  242 (384)
                      ....+|++|-|..-......+..+..+|.
T Consensus       228 ~~~~~d~vi~~~G~~~~~~~~~~l~~~G~  256 (354)
T 2j8z_A          228 KGAGVNLILDCIGGSYWEKNVNCLALDGR  256 (354)
T ss_dssp             TTSCEEEEEESSCGGGHHHHHHHEEEEEE
T ss_pred             cCCCceEEEECCCchHHHHHHHhccCCCE
Confidence            12368999887654444455555555543

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=84.25  E-value=3.6  Score=37.04  Aligned_cols=83  Identities=12%  Similarity=0.065  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEe-CCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIE-KDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE-~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++.|   .++..|++.|++|+.++ .+....+........ ..++.++.+|+.+...-..+.+....  ..
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~  101 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLA--DF  101 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH--Hc
Confidence            4567887786644   23444555689999998 566555544444332 34789999998875432222211111  12


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.+|.|.
T Consensus       102 g~id~li~nA  111 (269)
T 3gk3_A          102 GKVDVLINNA  111 (269)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4688998874

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=84.22  E-value=3.4  Score=37.91  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCC---cEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhh
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGA---TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~---~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      .++++|=.|++.|.   ++..|++.|+   +|+.++.+.+-++.+.+.+..   ..++.++.+|+.+...-+.+.+... 
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~-  110 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP-  110 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC-
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH-
Confidence            46789999976542   2334445566   999999998887776665532   2478889999887653222111110 


Q ss_pred             hccCCCcceEeecc
Q 016715          212 RKSSSGFAKVVANI  225 (384)
Q Consensus       212 ~~~~~~~d~Vv~Nl  225 (384)
                       ...+..|++|.|-
T Consensus       111 -~~~g~iD~lVnnA  123 (287)
T 3rku_A          111 -QEFKDIDILVNNA  123 (287)
T ss_dssp             -GGGCSCCEEEECC
T ss_pred             -HhcCCCCEEEECC
Confidence             1124689999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.19  E-value=1.5  Score=43.46  Aligned_cols=53  Identities=13%  Similarity=0.328  Sum_probs=40.6

Q ss_pred             CCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      ..+|+=+|||  ..+..+++    .|.+|+.||.|++.++.+.+.+    .+.+++||+.+..
T Consensus         3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~----~~~~i~Gd~~~~~   59 (461)
T 4g65_A            3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY----DLRVVNGHASHPD   59 (461)
T ss_dssp             CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS----SCEEEESCTTCHH
T ss_pred             cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc----CcEEEEEcCCCHH
Confidence            4577777775  45555554    3678999999999999888775    5789999998865

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=84.09  E-value=3.1  Score=37.06  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+++||=.|++ |.++..    |++.|++|++++.++.-.+.+.+.+  ..++.++.+|+.+...-..+.+....  ..+
T Consensus        11 ~~k~vlVTGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~--~~g   85 (265)
T 2o23_A           11 KGLVAVITGGA-SGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKG--KFG   85 (265)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHH--HCC
Confidence            46789988876 444444    4456899999999876555544444  24788999998875422211111111  124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.||.|.
T Consensus        86 ~id~li~~A   94 (265)
T 2o23_A           86 RVDVAVNCA   94 (265)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689998774

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=83.92  E-value=2.4  Score=37.96  Aligned_cols=85  Identities=12%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      .+++||=.|++ |.++..++    +.|   ++|++++.++.-.+.+.+.....+++.++.+|+.+...-..+.+......
T Consensus        20 ~~k~vlITGas-ggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           20 HMNSILITGCN-RGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             CCSEEEESCCS-SHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence            45688888865 55555554    457   89999998865444333322223578999999987643222221111101


Q ss_pred             cCCCcceEeeccC
Q 016715          214 SSSGFAKVVANIP  226 (384)
Q Consensus       214 ~~~~~d~Vv~NlP  226 (384)
                      .....|.||.|.-
T Consensus        99 g~~~id~li~~Ag  111 (267)
T 1sny_A           99 KDQGLNVLFNNAG  111 (267)
T ss_dssp             GGGCCSEEEECCC
T ss_pred             CCCCccEEEECCC
Confidence            1015889987753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=83.90  E-value=3.9  Score=35.77  Aligned_cols=70  Identities=20%  Similarity=0.271  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCe-EEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQL-KVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v-~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|+ +|.++..++    +.|.+|++++.++.-.+.+..     .++ +++.+|+. -.+.+          ..
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-----~~~~~~~~~Dl~-~~~~~----------~~   82 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-----RGASDIVVANLE-EDFSH----------AF   82 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-----TTCSEEEECCTT-SCCGG----------GG
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-----CCCceEEEcccH-HHHHH----------HH
Confidence            4678998886 355555444    458899999999876555433     268 89999987 12221          11


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      +..|.||.|...
T Consensus        83 ~~~D~vi~~ag~   94 (236)
T 3e8x_A           83 ASIDAVVFAAGS   94 (236)
T ss_dssp             TTCSEEEECCCC
T ss_pred             cCCCEEEECCCC
Confidence            467999987653

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=83.84  E-value=3.7  Score=36.53  Aligned_cols=82  Identities=12%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcchHHHHH----HHH-cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLN-AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~-~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .+++||=.|++ |.++..    |++ .|++|++++.++.-.+.+.+.+.. ..++.++.+|+.+...-..+.+.+..  .
T Consensus         3 ~~k~vlITGas-ggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~   79 (276)
T 1wma_A            3 GIHVALVTGGN-KGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK--E   79 (276)
T ss_dssp             CCCEEEESSCS-SHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH--h
Confidence            45678877754 555544    455 688999999998766655554432 24788999998875422211111111  1


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|.||.|.
T Consensus        80 ~g~id~li~~A   90 (276)
T 1wma_A           80 YGGLDVLVNNA   90 (276)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            14688888774

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=83.79  E-value=3.4  Score=37.70  Aligned_cols=82  Identities=15%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCH-HHHHHHHHHhc--CCCCeEEEEccccc----cchhh-hhhhHH
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQ-HMVGLVRERFA--SIDQLKVLQEDFVK----CHIRS-HMLSLF  209 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~-~~~~~a~~~~~--~~~~v~~~~gD~~~----~~~~~-~~~~~~  209 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.++ .-.+.+.+.+.  ...++.++.+|+.+    ...-. .+..+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            4678888887654   23344555699999999986 55554444432  22478899999987    32111 111111


Q ss_pred             hhhccCCCcceEeecc
Q 016715          210 ERRKSSSGFAKVVANI  225 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~Nl  225 (384)
                      +   ..+..|++|.|-
T Consensus       102 ~---~~g~iD~lvnnA  114 (288)
T 2x9g_A          102 R---AFGRCDVLVNNA  114 (288)
T ss_dssp             H---HHSCCCEEEECC
T ss_pred             H---hcCCCCEEEECC
Confidence            1   124689998874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=83.68  E-value=2.3  Score=40.25  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=36.2

Q ss_pred             HhcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715          136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       136 ~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~  181 (384)
                      ...+.++++||-+|+  |.|..+..+++. |++|++++.+++-.+.+++
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  213 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ  213 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence            345678999999997  557777766664 8899999999988877654

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=83.63  E-value=2.8  Score=38.00  Aligned_cols=83  Identities=16%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHH-------HHHHHHHhc-CCCCeEEEEccccccchhhhhhhHH
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHM-------VGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~-------~~~a~~~~~-~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.+..-       ++.+.+.+. ...++.++.+|..+...-..+.+..
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   84 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAAT   84 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            4678999998765   3445566679999999987531       222222222 2347889999988754322222111


Q ss_pred             hhhccCCCcceEeecc
Q 016715          210 ERRKSSSGFAKVVANI  225 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~Nl  225 (384)
                      ..  ..+..|++|.|-
T Consensus        85 ~~--~~g~iD~lvnnA   98 (274)
T 3e03_A           85 VD--TFGGIDILVNNA   98 (274)
T ss_dssp             HH--HHSCCCEEEECC
T ss_pred             HH--HcCCCCEEEECC
Confidence            11  125689998874

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=83.58  E-value=4.1  Score=36.20  Aligned_cols=82  Identities=21%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--------CCeEEEEccccccchhhhhh-hH
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--------DQLKVLQEDFVKCHIRSHML-SL  208 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--------~~v~~~~gD~~~~~~~~~~~-~~  208 (384)
                      .+++||=.|++.|.   ++..|++.|++|++++.++.-.+.+.+.+...        .++.++.+|..+...-.... .+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            45688888876442   33344556899999999987766555443211        36888999988753221111 11


Q ss_pred             HhhhccCCCc-ceEeecc
Q 016715          209 FERRKSSSGF-AKVVANI  225 (384)
Q Consensus       209 ~~~~~~~~~~-d~Vv~Nl  225 (384)
                      .+   ..+.. |.||.|.
T Consensus        86 ~~---~~g~i~d~vi~~A  100 (264)
T 2pd6_A           86 QA---CFSRPPSVVVSCA  100 (264)
T ss_dssp             HH---HHSSCCSEEEECC
T ss_pred             HH---HhCCCCeEEEECC
Confidence            11   11344 8888774

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=83.53  E-value=3.9  Score=36.50  Aligned_cols=83  Identities=11%  Similarity=0.093  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .+++||=.|++ |.++..    |++.|++|++++.++.-.+.+.+.+.. ..++.++.+|..+...-....+.... ...
T Consensus        13 ~~k~vlITGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   90 (266)
T 1xq1_A           13 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS-MFG   90 (266)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-HHT
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH-HhC
Confidence            45688887765 444444    445689999999998766655544432 24788899998765422211111110 011


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|.||.|.
T Consensus        91 ~~id~li~~A  100 (266)
T 1xq1_A           91 GKLDILINNL  100 (266)
T ss_dssp             TCCSEEEEEC
T ss_pred             CCCcEEEECC
Confidence            4678888774

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=83.51  E-value=6.7  Score=31.95  Aligned_cols=74  Identities=15%  Similarity=0.153  Sum_probs=45.9

Q ss_pred             CCEEEEEcCcchHHHHHHH----HcCCcEEEEeCC-HHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d-~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ..+|+=+|+  |..+..++    +.|.+|+.+|.+ ++.++.+.....  .++.++.||+.+...-..        ....
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~--~~~~~i~gd~~~~~~l~~--------a~i~   70 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSVLKK--------AGID   70 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHHHHH--------HTTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc--CCCeEEEcCCCCHHHHHH--------cChh
Confidence            346777776  55555544    448899999997 555555554432  368899999876432110        0124


Q ss_pred             CcceEeeccCc
Q 016715          217 GFAKVVANIPF  227 (384)
Q Consensus       217 ~~d~Vv~NlPy  227 (384)
                      ..|.||...+.
T Consensus        71 ~ad~vi~~~~~   81 (153)
T 1id1_A           71 RCRAILALSDN   81 (153)
T ss_dssp             TCSEEEECSSC
T ss_pred             hCCEEEEecCC
Confidence            57888876654

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=83.40  E-value=2.6  Score=38.16  Aligned_cols=80  Identities=14%  Similarity=0.232  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~  216 (384)
                      .+++||=.|++.|   .++..|++.|++|++++.++.-++.+.+..  .+++.++.+|..+...-..+. .+..   ..+
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~---~~g   78 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY--PDRAEAISLDVTDGERIDVVAADVLA---RYG   78 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC--TTTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--cCCceEEEeeCCCHHHHHHHHHHHHH---hCC
Confidence            3567887776543   233445556999999999987666555443  247899999988754322111 1111   124


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|-
T Consensus        79 ~id~lv~~A   87 (281)
T 3m1a_A           79 RVDVLVNNA   87 (281)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            678988774

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=83.23  E-value=4.5  Score=36.04  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=47.8

Q ss_pred             EEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhh-ccCCCcc
Q 016715          144 IVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR-KSSSGFA  219 (384)
Q Consensus       144 ~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~-~~~~~~d  219 (384)
                      ++|=.|++.|   .++..|++.|++|+.++.+++-++.+.+.+.  .++.++.+|..+...-.   .++... ...+..|
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~---~~~~~~~~~~g~iD   76 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIE---EMLASLPAEWCNID   76 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHH---HHHHTSCTTTCCCC
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--CceEEEEcCCCCHHHHH---HHHHHHHHhCCCCC
Confidence            4565665443   2345556679999999999887776665553  47888999987753221   111110 1124689


Q ss_pred             eEeecc
Q 016715          220 KVVANI  225 (384)
Q Consensus       220 ~Vv~Nl  225 (384)
                      .+|.|.
T Consensus        77 ~lvnnA   82 (248)
T 3asu_A           77 ILVNNA   82 (248)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            998874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=83.23  E-value=2.2  Score=42.31  Aligned_cols=74  Identities=15%  Similarity=0.134  Sum_probs=53.4

Q ss_pred             CCHHHHHHHHHHhcCC--CCCEEEEEcCcc-hHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch
Q 016715          125 LNSEINDQLAAAAAVQ--EGDIVLEIGPGT-GSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~--~~~~VLEIG~G~-G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~  201 (384)
                      ..+.-++++.+.+...  +.++|+=+|.|. |+..+..++...+|..+|.|++-++.+.+.+   ++..+++||+.+..+
T Consensus       216 ~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l---~~~~Vi~GD~td~~~  292 (461)
T 4g65_A          216 AASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL---ENTIVFCGDAADQEL  292 (461)
T ss_dssp             EETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC---TTSEEEESCTTCHHH
T ss_pred             eccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC---CCceEEeccccchhh
Confidence            3445566677766533  456888888764 4444444445679999999999999988876   578999999998653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=83.09  E-value=2.7  Score=38.38  Aligned_cols=83  Identities=14%  Similarity=0.156  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHH-------HHHHHHHHhc-CCCCeEEEEccccccchhhhhhhHH
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQH-------MVGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLSLF  209 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~-------~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~~~~~~~  209 (384)
                      .++++|=.|++.|   .++..|++.|++|+.++.++.       .++.+.+.+. ...++.++.+|..+...-..+.+..
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   87 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKT   87 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            4678999998765   244555556899999998865       2222222222 2347889999988754322222111


Q ss_pred             hhhccCCCcceEeecc
Q 016715          210 ERRKSSSGFAKVVANI  225 (384)
Q Consensus       210 ~~~~~~~~~d~Vv~Nl  225 (384)
                      ..  ..+..|.+|.|-
T Consensus        88 ~~--~~g~id~lvnnA  101 (285)
T 3sc4_A           88 VE--QFGGIDICVNNA  101 (285)
T ss_dssp             HH--HHSCCSEEEECC
T ss_pred             HH--HcCCCCEEEECC
Confidence            11  124789999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1i4wa_	322	c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake	1e-51
d1qyra_	252	c.66.1.24 (A:) High level kasugamycin resistance p	2e-37
d1zq9a1	278	c.66.1.24 (A:36-313) Probable dimethyladenosine tr	2e-34
d1yuba_	245	c.66.1.24 (A:) rRNA adenine dimethylase {Streptoco	7e-32
d1qama_	235	c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus	4e-29
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	5e-08
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	2e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	7e-06
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	4e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	4e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	7e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	3e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	0.001
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.001
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.002
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.003

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  173 bits (439), Expect = 1e-51
 Identities = 42/312 (13%), Positives = 89/312 (28%), Gaps = 52/312 (16%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNAGAT--V 166
            +   G  Y+ N  + +++     +       E   VL++ PG G  + +  N       
Sbjct: 11  LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 70

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA------- 219
             +EK   +   +  +F     L++L+ D       S+++            +       
Sbjct: 71  SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 129

Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
             VAN+    S  +I Q L               +++L +   TA +L+           
Sbjct: 130 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 188

Query: 272 INIFVNFYSEPE---------------------YKFKVPRTNFFPQPKVDAAVVTFKLKQ 310
            ++    +++ +                               +P      A+V      
Sbjct: 189 CSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDP-- 246

Query: 311 ATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-TSLEIEKALGDVGLPATSRPEEL 369
                      ++  +       KR  L   +  L     +   +           P +L
Sbjct: 247 ---IDFDFDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQYFNSRITDKDLLKKCPIDL 303

Query: 370 TLDDFVKLHNLI 381
           T D+F+ L  L 
Sbjct: 304 TNDEFIYLTKLF 315

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

 Score =  133 bits (335), Expect = 2e-37
 Identities = 59/261 (22%), Positives = 120/261 (45%), Gaps = 13/261 (4%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D +  +       + +         +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQDAMTFNFGELAEKMGQP-------LRVFGNLPYNISTPLMFHLFSY 113

Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
            D  +++  +LQ+E     +     +  Y  +++   +Y       +VP + F P PKVD
Sbjct: 114 TDAIADMHFMLQKEVV-NRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 172

Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
           +AVV         +P V   +    + + AFN +RK +R SL +L +     + L  +G+
Sbjct: 173 SAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLFS----VEVLTGMGI 227

Query: 361 PATSRPEELTLDDFVKLHNLI 381
               R E +++  + ++ N +
Sbjct: 228 DPAMRAENISVAQYCQMANYL 248

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 2e-34
 Identities = 69/289 (23%), Positives = 120/289 (41%), Gaps = 47/289 (16%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           QH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +V  + 
Sbjct: 1   QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELH 60

Query: 181 ERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
           +R        +L+VL  D +K  +                    VAN+P+ IS+  + +L
Sbjct: 61  KRVQGTPVASKLQVLVGDVLKTDLPFFD--------------TCVANLPYQISSPFVFKL 106

Query: 238 LPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQP 297
           L     F   +L+ Q E A   +        Y  ++I     +  ++  KV + NF P P
Sbjct: 107 LLHRPFFRCAILMFQREFA-LRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPP 165

Query: 298 KVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL--------------- 342
           KV+++VV  + K     P   + + +  +V   F  K K L  +                
Sbjct: 166 KVESSVVRIEPKN---PPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRI 222

Query: 343 ----------QHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
                     +    + +I++ L   G  +  R   + +DDF++L +  
Sbjct: 223 HCSVHNIIIPEDFSIADKIQQILTSTGF-SDKRARSMDIDDFIRLLHGF 270

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

 Score =  118 bits (297), Expect = 7e-32
 Identities = 50/265 (18%), Positives = 106/265 (40%), Gaps = 31/265 (11%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H
Sbjct: 3   KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  L  E+     ++ ++ +D ++    +                K+V NIP+++ST +I
Sbjct: 63  LFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ------------RYKIVGNIPYHLSTQII 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
           K+++         +++ +                +R + + ++     +   K+P   F 
Sbjct: 111 KKVVFESRASDIYLIVEEGFYK-------RTLDIHRTLGLLLHTQVSIQQLLKLPAECFH 163

Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
           P+PKV++ ++       TD P     K +   VS   N + + L    Q         +A
Sbjct: 164 PKPKVNSVLIKLTRHT-TDVP-DKYWKLYTYFVSKWVNREYRQLFTKNQ-------FHQA 214

Query: 355 LGDVGLPATSRPEELTLDDFVKLHN 379
           +    +   +    +T +  + + N
Sbjct: 215 MKHAKV---NNLSTITYEQVLSIFN 236

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} Length = 235

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

 Score =  111 bits (277), Expect = 4e-29
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 31/261 (11%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +    D++     + E D + EIG G G  T  L+     V AIE D  +     
Sbjct: 1   QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
            +    D  +VL +D ++     +               K+  NIP+NISTD+I++++  
Sbjct: 61  NKLVDHDNFQVLNKDILQFKFPKNQ------------SYKIFGNIPYNISTDIIRKIVFD 108

Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
             I  E+ L+++   A RL+         R + +F+    +      VPR  F P+PKV+
Sbjct: 109 -SIADEIYLIVEYGFAKRLLNT------KRSLALFLMAEVDISILSMVPREYFHPKPKVN 161

Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
           ++++    K+     +    + +   V    N + K +    Q          +L   G+
Sbjct: 162 SSLIRLNRKK--SRISHKDKQKYNYFVMKWVNKEYKKIFTKNQ-------FNNSLKHAGI 212

Query: 361 PATSRPEELTLDDFVKLHNLI 381
                   ++ + F+ L N  
Sbjct: 213 ---DDLNNISFEQFLSLFNSY 230

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 50.2 bits (119), Expect = 5e-08
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 5/148 (3%)

Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
           E+   +   A   + D+ +++G GTG +T  L      V AI+++   +           
Sbjct: 20  EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79

Query: 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEV 247
                  D V         +L +                  I   +  +L P G I    
Sbjct: 80  -----LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA 134

Query: 248 VLLLQEETALRLVEPSLRTSEYRPINIF 275
           +LL  +  A+  +           +NI 
Sbjct: 135 ILLETKFEAMECLRDLGFDVNITELNIA 162

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           +L   AA++  + VL++  G G + N        V+A +  + ++
Sbjct: 6   KLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDIL 50

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           H+ L       +   A  +    VL+IG G G             + ++  + M
Sbjct: 2   HHSL-----GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEM 50

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 14/176 (7%)

Query: 113 RFPRKSLGQHYMLN---SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLA 168
           R    S  +H + N    E    L     ++ G  +L++G G+G +      + G T   
Sbjct: 2   RIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTG 61

Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
           I+         + R           E+         + +      ++             
Sbjct: 62  IDMSSLFTAQAKRRA----------EELGVSERVHFIHNDAAGYVANEKCDVAACVGATW 111

Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
           I+         +        ++L  E   R +  +   ++   ++   +F + P  
Sbjct: 112 IAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGL 167

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 12/152 (7%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFA--- 184
           + + +   +  GD VLE G G+G ++  L  A      V++ E  +    L ++ +    
Sbjct: 88  NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147

Query: 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI--PFNISTDVIKQLLPMGD 242
              +L  ++E           +S       S  F  V  ++  P          L   G 
Sbjct: 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 207

Query: 243 IFSEVVLLLQEETALRLVEPSLRTSEYRPINI 274
                V ++     + L++  +RT E      
Sbjct: 208 C---AVYVVNITQVIELLD-GIRTCELALSCE 235

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEK 171
            G H  ML  E+      + +     + +  +VL++G GTG L      AGA  V+ IE 
Sbjct: 5   FGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEC 64

Query: 172 DQHM 175
               
Sbjct: 65  SSIS 68

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
            +     ++ G  +LE+G G+G++++ +   LN   T+  +E+D+  +    +  +
Sbjct: 76  YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
            G H  ML  +I      D +     + +  +VL++G GTG L+     AGA  VL +++
Sbjct: 7   YGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQ 66

Query: 172 DQHMV 176
            + + 
Sbjct: 67  SEILY 71

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 127 SEINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183
           SE+N  L     +  V  G  VL    G     + L   G  V+  E  +  V       
Sbjct: 3   SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTER 62

Query: 184 ASIDQLKVLQEDFVKCHIRSHML 206
                +    +  V       + 
Sbjct: 63  GEQPHITSQGDFKVYAAPGIEIW 85

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
            G H  ML   +      + +     + +  IVL++G GTG L+      GA  V+ ++ 
Sbjct: 10  YGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM 69

Query: 172 DQHM 175
              +
Sbjct: 70  SSII 73

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 11/144 (7%)

Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
           +G      +E    L           VL++  GTG  + +L+  G +V +++    M+  
Sbjct: 34  IGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY 93

Query: 179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238
             +   +    +  +  F K  I        ++   +      V         +    L 
Sbjct: 94  ALKERWN----RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI-----CLGNSFAHLP 144

Query: 239 PMGDIFSEVVLLLQEETALRLVEP 262
                 SE  L L+      +V P
Sbjct: 145 DSKGDQSEHRLALKN--IASMVRP 166

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
               +LE+G   G  T+ L      +  +E  +  
Sbjct: 20  RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 54

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 132 QLAAAAA------VQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERF 183
           +LAA         ++  + VL +G  +G+  + L  +     + A+E        + E  
Sbjct: 41  KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELV 100

Query: 184 ASIDQLKVLQEDFVKCH 200
              + +  L  D  K  
Sbjct: 101 RERNNIIPLLFDASKPW 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	100.0
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	100.0
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	100.0
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	100.0
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	100.0
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.71
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.7
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.67
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.64
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.62
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.61
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.57
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.53
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.5
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.48
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.46
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.4
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.37
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.36
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.36
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.36
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.33
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.32
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.32
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.3
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.29
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.28
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.25
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.25
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.23
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.22
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.21
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.2
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.2
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.19
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.19
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.18
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.18
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.18
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.16
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.15
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.14
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.14
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.11
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.11
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.1
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.1
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.06
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.06
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.04
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.03
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.03
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.02
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.01
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.0
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.98
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.95
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.94
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.93
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.91
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.9
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.89
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.88
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.88
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.85
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.84
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.83
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.82
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.79
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.75
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.72
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.71
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.67
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.6
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.48
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.34
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.34
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.32
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.26
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.23
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.0
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.94
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.94
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.77
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.71
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.65
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.57
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.51
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.49
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.41
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.31
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.26
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.24
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.15
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.11
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.08
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.05
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.99
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.93
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.92
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.71
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.69
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.62
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.59
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.39
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.22
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.21
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.02
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.78
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.5
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.49
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.25
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.22
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.03
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.97
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.73
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.48
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.43
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.42
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.29
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.27
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.23
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.22
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.11
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.92
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.91
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.83
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.54
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.47
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.37
d2hkja1	78	Topoisomerase VI-B subunit middle domain {Archaeon	92.28
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.26
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.07
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.0
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	91.99
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.9
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.9
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.77
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.55
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.49
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.43
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.3
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.28
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.14
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.07
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.9
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.88
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.57
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.46
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.39
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.29
d2i0za2	169	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.18
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	89.69
d2gy9m1	114	Ribosomal protein S13 {Escherichia coli [TaxId: 56	89.69
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.68
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.61
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.56
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	89.54
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.52
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.2
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.17
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	89.0
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	88.95
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.92
d2uubm1	125	Ribosomal protein S13 {Thermus thermophilus [TaxId	88.79
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	88.74
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.69
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.5
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.04
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	87.73
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	87.6
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.29
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.26
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.97
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	86.97
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.95
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.92
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	86.87
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	86.62
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.53
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	86.5
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	86.38
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	86.21
d1r2za1	94	DNA repair protein MutM (Fpg) {Bacillus stearother	85.83
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	85.67
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.61
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.39
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.14
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	83.74
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.72
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	83.31
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.27
d1tdza1	88	DNA repair protein MutM (Fpg) {Lactococcus lactis	83.17
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.0
d1k82a1	88	DNA repair protein MutM (Fpg) {Escherichia coli [T	82.75
d1ee8a1	89	DNA repair protein MutM (Fpg) {Thermus thermophilu	82.55
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	81.83
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.03
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	80.03

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-53  Score=395.91  Aligned_cols=250  Identities=25%  Similarity=0.430  Sum_probs=228.4

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       121 q~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      ||||.|+.++++|++.+.+.+++.|||||||+|++|..|++.+.+|+|||+|+++++.++++....++++++++|+++++
T Consensus         1 QnFL~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~   80 (252)
T d1qyra_           1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN   80 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred             CCccCCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc
Confidence            89999999999999999999999999999999999999999999999999999999999987766679999999999998


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeeeecc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS  280 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~~~  280 (384)
                      +.+...       ..+....||+|+||+++++++.++......+..+++|+|+|+|+|++ |.||++.||++|+++|+++
T Consensus        81 ~~~~~~-------~~~~~~~vvgNlPY~Iss~Il~~l~~~~~~~~~~~~m~QkEvA~Ri~-A~~gsk~yg~Lsv~~q~~~  152 (252)
T d1qyra_          81 FGELAE-------KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYC  152 (252)
T ss_dssp             HHHHHH-------HHTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHH-CCTTSTTCSHHHHHHHHHE
T ss_pred             cccccc-------ccCCCeEEEecchHHHHHHHHHHhcccccceehhhhhhhHHHHHHhc-cCCCChhhhHHHhhhhhcc
Confidence            765321       11456789999999999999999988777789999999999999999 8999999999999999999


Q ss_pred             cceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHHHHHHhCCC
Q 016715          281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGL  360 (384)
Q Consensus       281 ~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~~l~~~~l  360 (384)
                      +++..+.|++++|+|+|+|||+||+++|++++..+ ..+.+.|+.+++.+|.+|||+|+|+|+.+++.    ++|+++|+
T Consensus       153 ~~~~~~~V~~~~F~P~PkVdS~vv~l~~~~~~~~~-~~~~~~~~~~~~~~F~~rRK~l~~~L~~~~~~----~~l~~~~i  227 (252)
T d1qyra_         153 NVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLFSV----EVLTGMGI  227 (252)
T ss_dssp             EEEEEEEECGGGEESCCSSCEEEEEEEECSSCSSC-CSCHHHHHHHHHHHHHTTTSBHHHHTTTTCCH----HHHHHTTC
T ss_pred             ccccccccChhhhccccccceeEEEEecccccchh-hhHHHHHHHHHHHHHccchHHHHHHHhhhccH----HHHHHCCC
Confidence            99999999999999999999999999999875444 35678999999999999999999999988764    46788999


Q ss_pred             CCCCCCCcCCHHHHHHHHHHHHh
Q 016715          361 PATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       361 ~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      +++.||++||++||++|++.+++
T Consensus       228 ~~~~R~e~Ls~~~~~~L~~~l~~  250 (252)
T d1qyra_         228 DPAMRAENISVAQYCQMANYLAE  250 (252)
T ss_dssp             CTTSBGGGSCHHHHHHHHHHHHH
T ss_pred             CcccChhhCCHHHHHHHHHHHHh
Confidence            99999999999999999999864

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-52  Score=390.81  Aligned_cols=244  Identities=30%  Similarity=0.461  Sum_probs=222.7

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       121 q~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      ||||.|+.++++|++.+++.+++.|||||||+|.+|..|++.+++|++||+|+.+++.+++.+...   ++++++++|++
T Consensus         1 QnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l   80 (278)
T d1zq9a1           1 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   80 (278)
T ss_dssp             CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             CCCcCCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHh
Confidence            899999999999999999999999999999999999999999999999999999999999988653   48999999999


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeee
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVN  277 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q  277 (384)
                      +.+++              .++.||+|+||+++++++.+++.....+..+++|+|+|+|+|++ |.||++.||++||++|
T Consensus        81 ~~~~~--------------~~~~vV~NLPY~Iss~il~~~~~~~~~~~~~v~m~QkEvA~Rl~-A~p~~k~yg~LSv~~q  145 (278)
T d1zq9a1          81 KTDLP--------------FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLV-AKPGDKLYCRLSINTQ  145 (278)
T ss_dssp             TSCCC--------------CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHH-CCTTCTTCSHHHHHHH
T ss_pred             hhhhh--------------hhhhhhcchHHHHHHHHHHHHHhhCCccceeeEeecHHHHHHHh-hhhccchhhhhhhhee
Confidence            98653              45789999999999999999988777888999999999999999 8999999999999999


Q ss_pred             ecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcC----------
Q 016715          278 FYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT----------  347 (384)
Q Consensus       278 ~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~----------  347 (384)
                      ++++++++++|++++|+|+|+|||+||+|+|++.+.   ..+.+.|+.++|++|.+|||+|+|+|+..+.          
T Consensus       146 ~~~~v~~~~~Vp~~~F~P~PkVdSavv~l~pk~~~~---~~~~~~~~~~vr~~F~~RRK~l~n~Lk~~~~~~~l~~~~~~  222 (278)
T d1zq9a1         146 LLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPP---PINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRI  222 (278)
T ss_dssp             HHEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCC---SCCHHHHHHHHHHHHTTTTSBHHHHTTSHHHHHHHHHHHHH
T ss_pred             ecceeeEEeecccceeeeccccceEEEEeeccCCCc---hhhHHHHHHHHHHHhCccHHhHHHHHhhhhhHHHHHHhHHH
Confidence            999999999999999999999999999999987532   3467899999999999999999999976532          


Q ss_pred             ---------------hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          348 ---------------SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       348 ---------------~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                                     .+.++++|+++|++ ++|||+||++||++|++.|.+
T Consensus       223 ~~~i~~~~rpe~l~~~~~i~~~l~~~g~~-~~RaE~Ls~~~f~~L~~~l~~  272 (278)
T d1zq9a1         223 HCSVHNIIIPEDFSIADKIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA  272 (278)
T ss_dssp             HHHHHTCCCCTTCCHHHHHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred             hcCCCcccCcccccHHHHHHHHHHhcCCC-cCChhhCCHHHHHHHHHHHHH
Confidence                           24467889999997 689999999999999999864

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=100.00  E-value=3e-47  Score=350.53  Aligned_cols=232  Identities=24%  Similarity=0.400  Sum_probs=207.1

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       121 q~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      ||||.|+.++++|++.+++.++++|||||||+|.+|..|++.+++|+|||+|+++++.+++++...+|++++++|+++++
T Consensus         1 QnFL~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~   80 (235)
T d1qama_           1 QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK   80 (235)
T ss_dssp             CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC
T ss_pred             CCCcCCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999887789999999999998


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeeeecc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS  280 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~~~  280 (384)
                      ++.            .....||+|+||+|+++++.+++.. ..+..+++|+|+|+|+|++ +.|     +++|+++++++
T Consensus        81 ~~~------------~~~~~vv~NLPYnIss~il~~ll~~-~~~~~~vlm~QkEvA~Ri~-a~~-----~~lsv~~~~~~  141 (235)
T d1qama_          81 FPK------------NQSYKIFGNIPYNISTDIIRKIVFD-SIADEIYLIVEYGFAKRLL-NTK-----RSLALFLMAEV  141 (235)
T ss_dssp             CCS------------SCCCEEEEECCGGGHHHHHHHHHHS-CCCSEEEEEEEHHHHHHHT-CTT-----SHHHHHHTTTE
T ss_pred             ccc------------cccceeeeeehhhhhHHHHHHHHhh-hhhhhhhhhhhHHHHHhhh-ccc-----ccceEEEeecc
Confidence            653            3457899999999999999999864 4578899999999999999 544     46999999999


Q ss_pred             cceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHHHHHHhCCC
Q 016715          281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGL  360 (384)
Q Consensus       281 ~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~~l~~~~l  360 (384)
                      ++++++.|++++|+|+|||||+||+|+|++.+.  ...+.+.|..+++.+|.+|||++       +++..+.++|+.+|+
T Consensus       142 ~~~~~~~V~~~~F~P~PKVdS~vv~l~~k~~~~--~~~~~~~~~~~v~~~F~~rRK~i-------~~~~~l~~~l~~~~i  212 (235)
T d1qama_         142 DISILSMVPREYFHPKPKVNSSLIRLNRKKSRI--SHKDKQKYNYFVMKWVNKEYKKI-------FTKNQFNNSLKHAGI  212 (235)
T ss_dssp             EEEEEEEECGGGSBSCCSSCEEEEEEEECCCSS--CGGGHHHHHHHHHHHHTTCGGGT-------CCHHHHHHHHHHHTC
T ss_pred             ccccccccChhhccccccceEEEEEEEecCCCC--CccCHHHHHHHHHHHHccccccc-------cCHhHHHHHHHHcCC
Confidence            999999999999999999999999999987542  23457899999999999999986       234456678888998


Q ss_pred             CCCCCCCcCCHHHHHHHHHHHHh
Q 016715          361 PATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       361 ~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      +   |+++||++||++|++.++.
T Consensus       213 ~---r~e~Ls~ee~~~L~~~~~~  232 (235)
T d1qama_         213 D---DLNNISFEQFLSLFNSYKL  232 (235)
T ss_dssp             S---CTTSCCHHHHHHHHHHHHH
T ss_pred             C---ChHhCCHHHHHHHHHHHHh
Confidence            5   7999999999999998753

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=100.00  E-value=6e-47  Score=350.29  Aligned_cols=238  Identities=21%  Similarity=0.356  Sum_probs=210.1

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~  193 (384)
                      ..+++||||||.|+.++++|++.+++.+++.|||||||+|++|..|++.+.+|+|||+|+.+++.+++++...+++++++
T Consensus         2 ~~~~k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~   81 (245)
T d1yuba_           2 NKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIH   81 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhh
Confidence            35789999999999999999999999999999999999999999999999999999999999999998887677999999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccce
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~ls  273 (384)
                      +|+++++++.            ..++.||+|+||+++++++.+++.. ..+..+++|+|+|+|+|++ +     .||++|
T Consensus        82 ~D~l~~~~~~------------~~~~~vv~NLPY~Ist~il~~~l~~-~~~~~~v~m~QkEva~r~~-~-----~~~~ls  142 (245)
T d1yuba_          82 QDILQFQFPN------------KQRYKIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTL-D-----IHRTLG  142 (245)
T ss_dssp             SCCTTTTCCC------------SSEEEEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHH-C-----GGGSHH
T ss_pred             hhhhcccccc------------ceeeeEeeeeehhhhHHHHHHHhhh-chhhhhhhhhhhhHHhhhh-h-----hhhhhh
Confidence            9999988653            4678899999999999999998764 4577899999999999988 2     489999


Q ss_pred             eeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHHH
Q 016715          274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK  353 (384)
Q Consensus       274 vl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~  353 (384)
                      +++|++++++.+++|++++|+|+|+|||+||+|+|++.+ .+ ....+.|+.+++.+|.+|||++.+       ...+.+
T Consensus       143 v~~q~~~~~~~~~~v~~~~F~P~PkV~S~vi~l~~k~~~-~~-~~~~~~~~~~~~k~f~~~rK~l~~-------~~~~~~  213 (245)
T d1yuba_         143 LLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTD-VP-DKYWKLYTYFVSKWVNREYRQLFT-------KNQFHQ  213 (245)
T ss_dssp             HHTTTTBCCCEEEEECCTTSBSSCCSCEEEEEECBCSCS-SC-HHHHHHHHHHHHHHHHTCHHHHCS-------SSHHHH
T ss_pred             hhhhhcceeeeecccCcceEECCCcceEEEEEEEcCCCC-Cc-hhHHHHHHHHHHHHHhhHHHHhcc-------hhHHHH
Confidence            999999999999999999999999999999999998753 22 234678899999999999998743       334567


Q ss_pred             HHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          354 ALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       354 ~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      .++..++   .|+++|+.+||+.|++.+.
T Consensus       214 ~l~~~~~---~r~~~ls~~q~~~l~~~~~  239 (245)
T d1yuba_         214 AMKHAKV---NNLSTITYEQVLSIFNSYL  239 (245)
T ss_dssp             HHHHTTC---SCTTSCCSHHHHHHHHHHH
T ss_pred             HHHhcCC---CCCccCCHHHHHHHHHHHH
Confidence            7777766   3899999999999998764

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-44  Score=344.63  Aligned_cols=258  Identities=17%  Similarity=0.194  Sum_probs=216.6

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCC------CCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~------~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      +.++.|||||+.|+.++++|++.+++.      +++.|||||+|.|.+|..|++.+  .+|++||+|+.+++.+++.+..
T Consensus        10 k~kk~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~   89 (322)
T d1i4wa_          10 KLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG   89 (322)
T ss_dssp             SSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT
T ss_pred             hhhhhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC
Confidence            678999999999999999999998754      46789999999999999999873  3899999999999999988753


Q ss_pred             CCCeEEEEccccccchhhhhhhHHhhh----------ccCCCcceEeeccCccccHHHHHHhccc--------CCCeeEE
Q 016715          186 IDQLKVLQEDFVKCHIRSHMLSLFERR----------KSSSGFAKVVANIPFNISTDVIKQLLPM--------GDIFSEV  247 (384)
Q Consensus       186 ~~~v~~~~gD~~~~~~~~~~~~~~~~~----------~~~~~~d~Vv~NlPy~i~~~il~~L~~~--------g~~~~~~  247 (384)
                       ++++++++|++.++....   +....          ........||+|+||+++++++.+++..        ..-+.++
T Consensus        90 -~~~~ii~~D~l~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~vvaNLPy~iss~il~~~l~~~~~~~~l~~~g~~~~  165 (322)
T d1i4wa_          90 -SPLQILKRDPYDWSTYSN---LIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKM  165 (322)
T ss_dssp             -SSCEEECSCTTCHHHHHH---HTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEEE
T ss_pred             -CCcEEEeCchhhcchhhh---hhhcccccccccccccccCCceEEEEeCCchhhHHHHHHHHHhccccccccccccceE
Confidence             689999999998753211   11100          0001224689999999999999877641        1124689


Q ss_pred             EEEeeHHHHHHHhcCCCCCCCcccceeeeeecccceEE---------------------EEeCCCCCCCCCCCceEEEEE
Q 016715          248 VLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK---------------------FKVPRTNFFPQPKVDAAVVTF  306 (384)
Q Consensus       248 ~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~~~~~~~~---------------------~~v~~~~F~P~PkV~s~vv~l  306 (384)
                      ++|+|+|+|+|++ |.||++.|+++||++|++++++.+                     +.|++.+|+|+|+|||+||+|
T Consensus       166 vlm~QkEvA~Rl~-A~pg~k~y~~lSV~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~F~P~PkVds~vv~l  244 (322)
T d1i4wa_         166 LLWMPSTTARKLL-ARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEM  244 (322)
T ss_dssp             EEEEEHHHHHHHH-CCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCGGGBSSCSCCCEEEEEE
T ss_pred             EEEEeHHHHHHHh-cCCCCccccHHHHHHHHHhceeeecccccccccccccccccccCccccChhccCCCCCCCEEEEEE
Confidence            9999999999999 899999999999999999999987                     689999999999999999999


Q ss_pred             EEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHHHHHHhCCCCC---CCCCCcCCHHHHHHHHHHHHh
Q 016715          307 KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPA---TSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~~l~~~~l~~---~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      +|++.+     .+.+.|+++++++|.+|||+|+++|+.+++..  .++|...+.++   ++||++||++||++|++.+.+
T Consensus       245 ~P~~~~-----~~~~~~~~~vr~~F~~RRK~l~~~L~~l~p~~--~~~l~~~~~~~~~~~~Rpe~Ls~~~~~~L~~~~~k  317 (322)
T d1i4wa_         245 DPIDFD-----FDVDNWDYVTRHLMILKRTPLNTVMDSLGHGG--QQYFNSRITDKDLLKKCPIDLTNDEFIYLTKLFME  317 (322)
T ss_dssp             EECCCC-----SCHHHHHHHHHHHHTTTTSCTTTGGGGSSTTH--HHHHTTTCCCCTTTSSCGGGCCHHHHHHHHHHHHT
T ss_pred             ecCCCc-----cCHHHHHHHHHHHHHHhHHHHHHHHHHhCcch--HHHHHHhCCCcchhhcChhhCCHHHHHHHHHHHHh
Confidence            998752     36789999999999999999999999987654  35677777654   569999999999999999875

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.71  E-value=9e-17  Score=144.11  Aligned_cols=147  Identities=16%  Similarity=0.218  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhhCC-CChHHHHHHHHhCCC---CCcc-------------cCCCcccCCHHHHHHHHHHhcCCCCCEEEE
Q 016715           85 GAASACIVCARSQD-DDYHATIKALNSKGR---FPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLE  147 (384)
Q Consensus        85 ~~r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~-------------~~gq~fl~~~~~~~~il~~l~~~~~~~VLE  147 (384)
                      ..+.+||+...+.+ ....++.++|...++   .|..             ..|| +++.|.+.++|++.++++++++|||
T Consensus         6 e~~~~lv~~L~~~g~i~~~~v~~A~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~-~is~P~~~a~ml~~L~l~~g~~VLe   84 (215)
T d1jg1a_           6 EKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQ-TVSAPHMVAIMLEIANLKPGMNILE   84 (215)
T ss_dssp             HHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTC-EECCHHHHHHHHHHHTCCTTCCEEE
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHcCCchhcCCHHHhhcccccCCcccchhh-hhhhhhhHHHHHHhhccCccceEEE
Confidence            45678999888876 888999999987653   2322             1255 8999999999999999999999999


Q ss_pred             EcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715          148 IGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       148 IG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                      ||||+|++|+.|++. +.+|+++|.++.+++.+++++..  ..|+.++++|+.+.....            .+||.|+.+
T Consensus        85 IGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~------------~pfD~Iiv~  152 (215)
T d1jg1a_          85 VGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK------------APYDVIIVT  152 (215)
T ss_dssp             ECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG------------CCEEEEEEC
T ss_pred             ecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc------------CcceeEEee
Confidence            999999999999987 77899999999999999999874  359999999998865432            689998765


Q ss_pred             c-CccccHHHHHHhcccCCCe
Q 016715          225 I-PFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       225 l-Py~i~~~il~~L~~~g~~~  244 (384)
                      - ...+...++.+|+++|+++
T Consensus       153 ~a~~~ip~~l~~qL~~gGrLv  173 (215)
T d1jg1a_         153 AGAPKIPEPLIEQLKIGGKLI  173 (215)
T ss_dssp             SBBSSCCHHHHHTEEEEEEEE
T ss_pred             cccccCCHHHHHhcCCCCEEE
Confidence            3 3477889999999988764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.2e-16  Score=144.42  Aligned_cols=146  Identities=14%  Similarity=0.192  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhhCC-CChHHHHHHHHhCCC---CCcc---------cCCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcC
Q 016715           86 AASACIVCARSQD-DDYHATIKALNSKGR---FPRK---------SLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGP  150 (384)
Q Consensus        86 ~r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~---------~~gq~fl~~~~~~~~il~~l--~~~~~~~VLEIG~  150 (384)
                      .+..||+.+++.+ +...++.++|...++   .|..         ..|| +++.|.+..+|++.+  .+++|++||||||
T Consensus         7 ~~~~mv~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~~aY~D~~l~i~~~~-~is~P~~~a~~le~L~~~l~~g~~VLdiG~   85 (224)
T d1i1na_           7 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQA-TISAPHMHAYALELLFDQLHEGAKALDVGS   85 (224)
T ss_dssp             SHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSCTTSSSCEEEETTE-EECCHHHHHHHHHHTTTTSCTTCEEEEETC
T ss_pred             cHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCcccCCCCCccccchh-hhhhhHHHHHHHHHHhhccCCCCeEEEecC
Confidence            3789999999876 788899999987643   2222         1355 889999999999999  6789999999999


Q ss_pred             cchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          151 GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       151 G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      |+|++|+.|++.   ..+|+++|+++++++.|++++..       .+++.++.+|+.+....+            ..||+
T Consensus        86 GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~------------~~fD~  153 (224)
T d1i1na_          86 GSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEE------------APYDA  153 (224)
T ss_dssp             TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGG------------CCEEE
T ss_pred             CCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchh------------hhhhh
Confidence            999999999986   45899999999999999988752       258899999998876543            68999


Q ss_pred             Eeec-cCccccHHHHHHhcccCCCe
Q 016715          221 VVAN-IPFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       221 Vv~N-lPy~i~~~il~~L~~~g~~~  244 (384)
                      |+.+ .+.++...++.+|+++|.++
T Consensus       154 I~~~~~~~~ip~~l~~~LkpGG~LV  178 (224)
T d1i1na_         154 IHVGAAAPVVPQALIDQLKPGGRLI  178 (224)
T ss_dssp             EEECSBBSSCCHHHHHTEEEEEEEE
T ss_pred             hhhhcchhhcCHHHHhhcCCCcEEE
Confidence            9876 34477888999999988764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.67  E-value=2e-16  Score=142.67  Aligned_cols=133  Identities=18%  Similarity=0.218  Sum_probs=108.7

Q ss_pred             CChHHHHHHHHhCCC---CCcc---------------cCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHH
Q 016715           99 DDYHATIKALNSKGR---FPRK---------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL  160 (384)
Q Consensus        99 ~~~~~~~~~l~~~~~---~~~~---------------~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La  160 (384)
                      +...++.++|...++   .|..               ..|+ +++.|.+..+|++.++++++++|||||||+|++|+.|+
T Consensus        11 I~~~~v~~A~~~VpRe~Fvp~~~~~~AY~d~~~~l~i~~g~-~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La   89 (224)
T d1vbfa_          11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGI-NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIA   89 (224)
T ss_dssp             CCCHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTE-EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHH
T ss_pred             CCCHHHHHHHHcCcHHHcCChhhhhcCccCcccCcccCCCC-ceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHH
Confidence            455777788776543   2211               1144 67889999999999999999999999999999999999


Q ss_pred             HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec-cCccccHHHHHHhcc
Q 016715          161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNISTDVIKQLLP  239 (384)
Q Consensus       161 ~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy~i~~~il~~L~~  239 (384)
                      +.+.+|+++|+++.+++.|++++...+|+.++++|+......+            ++||+|+.+ ..-++...++.+|++
T Consensus        90 ~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~------------~pfD~Iiv~~a~~~ip~~l~~qLk~  157 (224)
T d1vbfa_          90 EIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEE------------KPYDRVVVWATAPTLLCKPYEQLKE  157 (224)
T ss_dssp             HHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGG------------CCEEEEEESSBBSSCCHHHHHTEEE
T ss_pred             HHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhh------------hhHHHHHhhcchhhhhHHHHHhcCC
Confidence            9999999999999999999999887789999999987754332            679998765 334778889999999


Q ss_pred             cCCCe
Q 016715          240 MGDIF  244 (384)
Q Consensus       240 ~g~~~  244 (384)
                      +|+++
T Consensus       158 GGrLV  162 (224)
T d1vbfa_         158 GGIMI  162 (224)
T ss_dssp             EEEEE
T ss_pred             CCEEE
Confidence            88765

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.64  E-value=1.8e-15  Score=133.49  Aligned_cols=166  Identities=16%  Similarity=0.198  Sum_probs=100.3

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCe
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQL  189 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v  189 (384)
                      .|+.++.| |.+++.+++.++..+.   .-.|++|||+|||+|.++..++..|+ +|++||+|+.+++.|+++.   .++
T Consensus        19 ~~~~~leQ-y~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~---~~~   94 (197)
T d1ne2a_          19 NFKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC---GGV   94 (197)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC---TTS
T ss_pred             CCCccccc-CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc---ccc
Confidence            67788999 9999999998875553   34689999999999999999999876 7999999999999999986   478


Q ss_pred             EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc-----HHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCC
Q 016715          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-----TDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSL  264 (384)
Q Consensus       190 ~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~-----~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~p  264 (384)
                      .++++|+.+++               +.||+||+|+||...     ..++....+.+..+..+...-..+...+...   
T Consensus        95 ~~~~~D~~~l~---------------~~fD~Vi~NPPfg~~~~~~D~~fl~~a~~~~~~iy~ih~~~~~~~i~~~~~---  156 (197)
T d1ne2a_          95 NFMVADVSEIS---------------GKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFS---  156 (197)
T ss_dssp             EEEECCGGGCC---------------CCEEEEEECCCC-------CHHHHHHHHHHEEEEEEEEEGGGHHHHHHHHH---
T ss_pred             cEEEEehhhcC---------------CcceEEEeCcccchhhhhchHHHHHHHHhcCCeEEEehhhhHHHHHHHHhh---
Confidence            99999997753               579999999999432     2334444433322211221111222222220   


Q ss_pred             CCCCcccceeeeeecccceEEEEeCCCC-CCCCCCCceEEEEEEEcC
Q 016715          265 RTSEYRPINIFVNFYSEPEYKFKVPRTN-FFPQPKVDAAVVTFKLKQ  310 (384)
Q Consensus       265 g~~~y~~lsvl~q~~~~~~~~~~v~~~~-F~P~PkV~s~vv~l~~~~  310 (384)
                         ..+      ..+...+..+.+++.. ||....++..|..++.++
T Consensus       157 ---~~~------~~~~~~~~~~~lp~~y~~H~~~~~~i~V~~~rir~  194 (197)
T d1ne2a_         157 ---ARG------DVFREEKVYITVPRIYRHHSYDRARIEAVIFGVRN  194 (197)
T ss_dssp             ---HHE------EEEEEEEEEEECCSCCC------CEEEEEEEEEEE
T ss_pred             ---cCc------eEEEEeeccCCCchhhhhcccceeEEEEEEEEEec
Confidence               011      1122334567777764 566666666666555444

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=2.7e-15  Score=135.13  Aligned_cols=145  Identities=19%  Similarity=0.277  Sum_probs=115.4

Q ss_pred             HHHHHHHHhhCC-CChHHHHHHHHhCCC---CCccc---------CCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcCc
Q 016715           87 ASACIVCARSQD-DDYHATIKALNSKGR---FPRKS---------LGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPG  151 (384)
Q Consensus        87 r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~~---------~gq~fl~~~~~~~~il~~l--~~~~~~~VLEIG~G  151 (384)
                      +..||+...+.+ .+++.+.++|.+.++   .|+..         .|| +++.|.+..+|++.+  +++++++|||||||
T Consensus        12 ~~~lv~~l~~~gvi~~~~v~~a~~~vpRe~Fvp~~aY~D~~lpi~~~~-~is~P~~~a~~l~~L~~~l~~g~~VLeIGtG   90 (223)
T d1r18a_          12 NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGV-TISAPHMHAFALEYLRDHLKPGARILDVGSG   90 (223)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCT
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCccccCCCCccccCCc-eeehhhhHHHHHHHHhhccCCCCeEEEecCC
Confidence            568999655566 578999999987653   33322         255 889999999999998  78899999999999


Q ss_pred             chHHHHHHHHc----C----CcEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          152 TGSLTNVLLNA----G----ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       152 ~G~lt~~La~~----~----~~V~avE~d~~~~~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +|++|+.|++.    |    .+|+++|+++++++.+++++..       ..|+.++++|+.+.....            +
T Consensus        91 sGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~------------~  158 (223)
T d1r18a_          91 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN------------A  158 (223)
T ss_dssp             TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG------------C
T ss_pred             CCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc------------c
Confidence            99999999876    2    3799999999999999887532       258999999998865432            6


Q ss_pred             CcceEeecc-CccccHHHHHHhcccCCCe
Q 016715          217 GFAKVVANI-PFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       217 ~~d~Vv~Nl-Py~i~~~il~~L~~~g~~~  244 (384)
                      +||+|+.+- ...+...++.+|+++|.++
T Consensus       159 ~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV  187 (223)
T d1r18a_         159 PYNAIHVGAAAPDTPTELINQLASGGRLI  187 (223)
T ss_dssp             SEEEEEECSCBSSCCHHHHHTEEEEEEEE
T ss_pred             ceeeEEEEeechhchHHHHHhcCCCcEEE
Confidence            899987653 3467788999999988764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=5.6e-15  Score=132.23  Aligned_cols=145  Identities=16%  Similarity=0.179  Sum_probs=111.8

Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHhCCC---CCcc----------cC-----CC--cccCCHHHHHHHHHHhcCCCCCEEE
Q 016715           87 ASACIVCARSQDDDYHATIKALNSKGR---FPRK----------SL-----GQ--HYMLNSEINDQLAAAAAVQEGDIVL  146 (384)
Q Consensus        87 r~~mv~~~ir~~~~~~~~~~~l~~~~~---~~~~----------~~-----gq--~fl~~~~~~~~il~~l~~~~~~~VL  146 (384)
                      |+.+++...+.+++ +++.++|.+.++   .|..          .+     |+  .+++.|.+.+++++.+++++|++||
T Consensus         2 ~~~l~~~l~~~gi~-~~v~~a~~~v~Re~Fv~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~l~~g~~VL   80 (213)
T d1dl5a1           2 REKLFWILKKYGVS-DHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVL   80 (213)
T ss_dssp             HHHHHHHHHHTTCC-HHHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTTCCTTCEEE
T ss_pred             HHHHHHHHHHcCCC-HHHHHHHHcCCHHHcCCchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhhhccccceEE
Confidence            44566555556775 477788776542   1211          00     11  2567899999999999999999999


Q ss_pred             EEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          147 EIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       147 EIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      |||||+|++++.+++.   ..+|+++|+++.+++.+++++..  ..|+.++++|+.+....+            +.||+|
T Consensus        81 diG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~------------~~fD~I  148 (213)
T d1dl5a1          81 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF------------SPYDVI  148 (213)
T ss_dssp             EECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG------------CCEEEE
T ss_pred             EecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc------------cchhhh
Confidence            9999999999999986   34899999999999999998874  358999999998866543            679999


Q ss_pred             eecc-CccccHHHHHHhcccCCCe
Q 016715          222 VANI-PFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       222 v~Nl-Py~i~~~il~~L~~~g~~~  244 (384)
                      +.+. ..++...++.+|+++|.++
T Consensus       149 ~~~~~~~~~p~~l~~~LkpGG~lv  172 (213)
T d1dl5a1         149 FVTVGVDEVPETWFTQLKEGGRVI  172 (213)
T ss_dssp             EECSBBSCCCHHHHHHEEEEEEEE
T ss_pred             hhhccHHHhHHHHHHhcCCCcEEE
Confidence            8874 3467788999999988764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=8e-15  Score=130.02  Aligned_cols=100  Identities=30%  Similarity=0.422  Sum_probs=85.7

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHh---cCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-C
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q  188 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l---~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-~  188 (384)
                      +|+.+++| |.+++.++..|+..+   +.-+|++|||+|||+|.++..++.+|+ +|+|+|+|+.+++.+++++...+ +
T Consensus        17 ~~~~~l~q-y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~   95 (201)
T d1wy7a1          17 NPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK   95 (201)
T ss_dssp             SCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred             CCCccccc-CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC
Confidence            68889999 999999998876544   334688999999999999999998876 89999999999999999987543 7


Q ss_pred             eEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       189 v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      .+++.+|+.+++               ..||+||+|+||..
T Consensus        96 ~~~~~~d~~~~~---------------~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          96 FKVFIGDVSEFN---------------SRVDIVIMNPPFGS  121 (201)
T ss_dssp             EEEEESCGGGCC---------------CCCSEEEECCCCSS
T ss_pred             ceEEECchhhhC---------------CcCcEEEEcCcccc
Confidence            899999987753               57999999999954

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.53  E-value=1.7e-14  Score=126.18  Aligned_cols=108  Identities=18%  Similarity=0.252  Sum_probs=91.4

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      .+..++...++..+.+.++++|||||||+|.++..++..+.+|+|+|+++.+++.|+++++..   ++++++++|+.+..
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~   95 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc
Confidence            478899999999999999999999999999999999998889999999999999999998653   48999999998875


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccccHHHHH----HhcccCCC
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK----QLLPMGDI  243 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~----~L~~~g~~  243 (384)
                      ...            ..||.|+++.+..-..+++.    .|+++|.+
T Consensus        96 ~~~------------~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~l  130 (186)
T d1l3ia_          96 CKI------------PDIDIAVVGGSGGELQEILRIIKDKLKPGGRI  130 (186)
T ss_dssp             TTS------------CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEE
T ss_pred             ccc------------CCcCEEEEeCccccchHHHHHHHHHhCcCCEE
Confidence            432            68999999988765555554    45555544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.50  E-value=3.2e-14  Score=128.38  Aligned_cols=105  Identities=13%  Similarity=0.179  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~  204 (384)
                      ....+.+++.+++++|++|||||||+|.++..|++++.+|+|||+++.|++.|++++..  .+++.++++|+.++++++ 
T Consensus         2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~-   80 (234)
T d1xxla_           2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD-   80 (234)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT-
T ss_pred             chHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccc-
Confidence            35677899999999999999999999999999999999999999999999999988753  358999999999998765 


Q ss_pred             hhhHHhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCC
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI  243 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~  243 (384)
                                 +.||.|+++..++..       ..+.+.|+++|.+
T Consensus        81 -----------~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~  115 (234)
T d1xxla_          81 -----------DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRF  115 (234)
T ss_dssp             -----------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------cccceeeeeceeecccCHHHHHHHHHHeeCCCcEE
Confidence                       689999987665432       2344566666654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.48  E-value=3.9e-14  Score=126.94  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=84.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      +.++++.++++++++|||||||+|.++..+++.+++|+|+|+|+.|++.|++++..  .++++++++|+.++++++    
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~----   79 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD----   79 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT----
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccc----
Confidence            46788999999999999999999999999999999999999999999999988753  468999999999998754    


Q ss_pred             HHhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCCe
Q 016715          208 LFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDIF  244 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~~  244 (384)
                              +.||+|+++.-++..       .++.+.|+++|.++
T Consensus        80 --------~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  115 (231)
T d1vl5a_          80 --------ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL  115 (231)
T ss_dssp             --------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             --------cccccccccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence                    689999987555332       34455666666554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.46  E-value=1.4e-13  Score=121.00  Aligned_cols=94  Identities=17%  Similarity=0.357  Sum_probs=79.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccccchhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~~~~~~~  204 (384)
                      ..+.+++.+.+.++++|||||||+|.++..+++.+.+|+++|+|+.+++.+++++..+    .+++++.+|..+ .+.+ 
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~-  117 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD-  117 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT-
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhcc-
Confidence            3566888898889999999999999999999998999999999999999999987632    368999999877 3322 


Q ss_pred             hhhHHhhhccCCCcceEeeccCccccHHHHH
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~  235 (384)
                                 +.||+|++|+||+...+.+.
T Consensus       118 -----------~~fD~Ii~~~p~~~~~~~~~  137 (194)
T d1dusa_         118 -----------RKYNKIITNPPIRAGKEVLH  137 (194)
T ss_dssp             -----------SCEEEEEECCCSTTCHHHHH
T ss_pred             -----------CCceEEEEcccEEecchhhh
Confidence                       68999999999988766543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.40  E-value=3e-13  Score=123.91  Aligned_cols=127  Identities=19%  Similarity=0.228  Sum_probs=86.1

Q ss_pred             CCCcccCCCcccC-CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeE
Q 016715          113 RFPRKSLGQHYML-NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLK  190 (384)
Q Consensus       113 ~~~~~~~gq~fl~-~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~  190 (384)
                      +.|.-.||..... ..-+++.+.+.  ..+|++|||+|||+|.++..+++.|++|+|+|+|+.+++.|+++...++ +++
T Consensus        93 i~pg~aFGTG~H~TT~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~  170 (254)
T d2nxca1          93 IEPGMAFGTGHHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPR  170 (254)
T ss_dssp             CCCC-----CCSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCE
T ss_pred             EccccccCccccchhhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCcee
Confidence            4666677764332 22233333222  4578999999999999999999999999999999999999999887544 678


Q ss_pred             EEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccH----HHHHHhcccCCCeeEEEEEeeHH
Q 016715          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST----DVIKQLLPMGDIFSEVVLLLQEE  254 (384)
Q Consensus       191 ~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~----~il~~L~~~g~~~~~~~~~~qke  254 (384)
                      ++++|+.+.. +            .+.||.|++|+.++...    .+.+.|+++|.++...++.-|.+
T Consensus       171 ~~~~d~~~~~-~------------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~~~~  225 (254)
T d2nxca1         171 FLEGSLEAAL-P------------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAP  225 (254)
T ss_dssp             EEESCHHHHG-G------------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHH
T ss_pred             EEeccccccc-c------------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecchhhHH
Confidence            8999876532 1            26899999997765544    34456777777654444333433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.37  E-value=1.4e-12  Score=110.14  Aligned_cols=101  Identities=15%  Similarity=0.267  Sum_probs=80.3

Q ss_pred             HHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (384)
                      .+.+++++... .|.+|||+|||+|.++..++.+|+ +|++||.|+.+++.+++++...   ++++++++|+.+....  
T Consensus         2 re~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~--   79 (152)
T d2esra1           2 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC--   79 (152)
T ss_dssp             HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH--
T ss_pred             cHHHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc--
Confidence            45677777653 688999999999999999999976 8999999999999999998754   3799999998874211  


Q ss_pred             hhhHHhhhccCCCcceEeeccCcccc--HHHHHHhcccC
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPMG  241 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~--~~il~~L~~~g  241 (384)
                               ....||+|+.|+||...  .+.+..+...+
T Consensus        80 ---------~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~  109 (152)
T d2esra1          80 ---------LTGRFDLVFLDPPYAKETIVATIEALAAKN  109 (152)
T ss_dssp             ---------BCSCEEEEEECCSSHHHHHHHHHHHHHHTT
T ss_pred             ---------cccccceeEechhhccchHHHHHHHHHHCC
Confidence                     23689999999999543  45666665544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.7e-12  Score=117.63  Aligned_cols=90  Identities=13%  Similarity=0.225  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      ..+..++.+.+.+.+.+|++|||||||+|.++..+++. +++|+|||+|+.|++.++++....   ++++++++|+.++.
T Consensus        17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~   96 (245)
T d1nkva_          17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   96 (245)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc
Confidence            46778889999999999999999999999999999886 789999999999999999986543   47999999999874


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      . +            +.||.|++...+
T Consensus        97 ~-~------------~~fD~v~~~~~~  110 (245)
T d1nkva_          97 A-N------------EKCDVAACVGAT  110 (245)
T ss_dssp             C-S------------SCEEEEEEESCG
T ss_pred             c-c------------CceeEEEEEehh
Confidence            2 2            679999886444

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.36  E-value=5.8e-13  Score=122.39  Aligned_cols=117  Identities=21%  Similarity=0.334  Sum_probs=97.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcC-----CCCeEEEEcc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQED  195 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~-----~~~v~~~~gD  195 (384)
                      +.-|.-+..|+..+++.+|++|||+|||+|++|..|++. +  .+|+++|+++++++.|++++..     .+|+.++++|
T Consensus        79 iiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  158 (264)
T d1i9ga_          79 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  158 (264)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             ccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence            456788899999999999999999999999999999987 3  5899999999999999998753     2599999999


Q ss_pred             ccccchhhhhhhHHhhhccCCCcceEeeccCc--cccHHHHHHhcccCCCeeEEEEEee
Q 016715          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIFSEVVLLLQ  252 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy--~i~~~il~~L~~~g~~~~~~~~~~q  252 (384)
                      +.+.++++            +.||.|+.++|-  .....+.+.|+++|.+......+-|
T Consensus       159 ~~~~~~~~------------~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q  205 (264)
T d1i9ga_         159 LADSELPD------------GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ  205 (264)
T ss_dssp             GGGCCCCT------------TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred             cccccccC------------CCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccCh
Confidence            99877654            689999999864  6667888888888876544443434

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=1.6e-12  Score=117.72  Aligned_cols=83  Identities=22%  Similarity=0.300  Sum_probs=71.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .+..++......++.+|||||||+|.++..|++.|.+|+|||+++.|++.|++++... .+++++++|+.+++++     
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-----  103 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-----  103 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-----
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccc-----
Confidence            4556666667777889999999999999999999999999999999999999987643 4899999999998764     


Q ss_pred             HHhhhccCCCcceEeec
Q 016715          208 LFERRKSSSGFAKVVAN  224 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~N  224 (384)
                              +.||.|++.
T Consensus       104 --------~~fD~I~~~  112 (251)
T d1wzna1         104 --------NEFDAVTMF  112 (251)
T ss_dssp             --------SCEEEEEEC
T ss_pred             --------cccchHhhh
Confidence                    478988863

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=1.4e-12  Score=115.78  Aligned_cols=76  Identities=20%  Similarity=0.275  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.|+++.... .++.++++|+.++++++            +.|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~------------~~f  103 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED------------KTF  103 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT------------TCE
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccC------------cCc
Confidence            46789999999999999999999999999999999999999887543 47889999999988764            689


Q ss_pred             ceEeeccCc
Q 016715          219 AKVVANIPF  227 (384)
Q Consensus       219 d~Vv~NlPy  227 (384)
                      |+|+++--+
T Consensus       104 D~I~~~~~l  112 (226)
T d1ve3a1         104 DYVIFIDSI  112 (226)
T ss_dssp             EEEEEESCG
T ss_pred             eEEEEecch
Confidence            999987554

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.32  E-value=2.3e-12  Score=111.59  Aligned_cols=90  Identities=18%  Similarity=0.117  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--------------CCeEE
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--------------DQLKV  191 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--------------~~v~~  191 (384)
                      ++.+. ..+..+.+.++.+|||||||+|..+..|+++|.+|+|+|+|+.|++.|+++....              .++.+
T Consensus         6 ~~~~~-~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T d1pjza_           6 NKDLQ-QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI   84 (201)
T ss_dssp             THHHH-HHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred             HHHHH-HHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccce
Confidence            45543 3567788889999999999999999999999999999999999999999987532              25678


Q ss_pred             EEccccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       192 ~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +.+|+.+++...           ...+|.|++..-+
T Consensus        85 ~~~d~~~l~~~~-----------~~~~D~i~~~~~l  109 (201)
T d1pjza_          85 WCGDFFALTARD-----------IGHCAAFYDRAAM  109 (201)
T ss_dssp             EEECCSSSTHHH-----------HHSEEEEEEESCG
T ss_pred             eccccccccccc-----------ccceeEEEEEeee
Confidence            888988876543           1468888876444

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.32  E-value=1.7e-12  Score=120.20  Aligned_cols=104  Identities=16%  Similarity=0.252  Sum_probs=81.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~  204 (384)
                      +++.+.....+.++.+|||||||+|.++..|+++ +++|+|||+++.+++.|+++...   .++++++++|+.++++++ 
T Consensus        55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~-  133 (282)
T d2o57a1          55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED-  133 (282)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT-
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccc-
Confidence            3444555557889999999999999999999987 88999999999999999988653   258999999999998764 


Q ss_pred             hhhHHhhhccCCCcceEeeccCc-ccc------HHHHHHhcccCCCe
Q 016715          205 MLSLFERRKSSSGFAKVVANIPF-NIS------TDVIKQLLPMGDIF  244 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy-~i~------~~il~~L~~~g~~~  244 (384)
                                 +.||+|+++-.+ ++.      ..+...|+++|.++
T Consensus       134 -----------~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~  169 (282)
T d2o57a1         134 -----------NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA  169 (282)
T ss_dssp             -----------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             -----------cccchhhccchhhhccCHHHHHHHHHHhcCCCcEEE
Confidence                       689999987554 332      23445566666543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.30  E-value=2.6e-12  Score=117.13  Aligned_cols=105  Identities=17%  Similarity=0.292  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~  200 (384)
                      |.-+..|+.++++++|++|||+|||+|++|..|++.   +.+|+++|+++++++.|++++...   .++++.++|+.+..
T Consensus        71 pkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          71 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI  150 (250)
T ss_dssp             ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc
Confidence            344567889999999999999999999999999986   358999999999999999998643   58999999998763


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCc--cccHHHHHHhcccCCCe
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy--~i~~~il~~L~~~g~~~  244 (384)
                      .             ...||.|+.|+|-  .....+...|+++|.++
T Consensus       151 ~-------------~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv  183 (250)
T d1yb2a1         151 S-------------DQMYDAVIADIPDPWNHVQKIASMMKPGSVAT  183 (250)
T ss_dssp             C-------------SCCEEEEEECCSCGGGSHHHHHHTEEEEEEEE
T ss_pred             c-------------cceeeeeeecCCchHHHHHHHHHhcCCCceEE
Confidence            2             2579999999864  56677778888877654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=5.5e-12  Score=109.70  Aligned_cols=117  Identities=17%  Similarity=0.183  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccc
Q 016715          125 LNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCH  200 (384)
Q Consensus       125 ~~~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~  200 (384)
                      +...+.+.+++.+.. -.+.+|||++||+|.++.+++.+|+ +|++||.|+.+++.+++++..  ..+++++.+|+.++.
T Consensus        26 t~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l  105 (183)
T d2fpoa1          26 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL  105 (183)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             CcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccc
Confidence            556777778777753 2678999999999999999999987 799999999999999998864  348899999988753


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccc--cHHHHHHhcccCCCeeEEEEEee
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGDIFSEVVLLLQ  252 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L~~~g~~~~~~~~~~q  252 (384)
                      ..           ....||+|+.||||..  ...++..+...+.+-...++.++
T Consensus       106 ~~-----------~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         106 AQ-----------KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             SS-----------CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cc-----------cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            21           2367999999999954  45666676665444444455554

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=6.5e-12  Score=108.07  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHhc--CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccch
Q 016715          125 LNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI  201 (384)
Q Consensus       125 ~~~~~~~~il~~l~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~  201 (384)
                      +...+.+.+++++.  ..++.+|||+|||+|.++.+++.+|++|+++|.|+.+++.+++++..++ +.++...|+.....
T Consensus        23 t~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~  102 (171)
T d1ws6a1          23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLP  102 (171)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHH
T ss_pred             CcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccc
Confidence            45567777777765  3578899999999999999999999999999999999999999986432 34566565544321


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCcccc-HHHHHHhcccC
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLLPMG  241 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~-~~il~~L~~~g  241 (384)
                      ...        .....||+|+.|+||... .+++..+...+
T Consensus       103 ~~~--------~~~~~fD~If~DPPY~~~~~~~l~~l~~~~  135 (171)
T d1ws6a1         103 EAK--------AQGERFTVAFMAPPYAMDLAALFGELLASG  135 (171)
T ss_dssp             HHH--------HTTCCEEEEEECCCTTSCTTHHHHHHHHHT
T ss_pred             ccc--------ccCCccceeEEccccccCHHHHHHHHHHcC
Confidence            110        123679999999999653 34455554433

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.25  E-value=2.1e-11  Score=105.91  Aligned_cols=120  Identities=16%  Similarity=0.302  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcccccc
Q 016715          125 LNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKC  199 (384)
Q Consensus       125 ~~~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~  199 (384)
                      +...+.+.+++.+.. .++.+|||++||+|.++.+++.+|+ +|++||.|+.+++.+++++..   ..+++++++|+.+.
T Consensus        24 t~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~  103 (182)
T d2fhpa1          24 TTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA  103 (182)
T ss_dssp             CCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh
Confidence            667888999999874 3789999999999999999999988 699999999999999998763   23899999999875


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCccc--cHHHHHHhcccCCCeeEEEEEee
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGDIFSEVVLLLQ  252 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L~~~g~~~~~~~~~~q  252 (384)
                      -...     .   .....||+|+.+|||..  ..+++..+...+.+-...++.++
T Consensus       104 l~~~-----~---~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         104 LEQF-----Y---EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHH-----H---HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hhhh-----c---ccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            3210     0   12357999999999953  35667776654433333444443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.25  E-value=5.9e-12  Score=113.96  Aligned_cols=70  Identities=23%  Similarity=0.264  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      ++++|||||||+|.++..++++|.+|+|||.|+.|++.|+++.... .+++++++|+.++++.             +.||
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-------------~~fD  103 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-------------RKFD  103 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-------------CCEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhccc-------------cccc
Confidence            4579999999999999999999999999999999999999987643 3899999999988643             5799


Q ss_pred             eEee
Q 016715          220 KVVA  223 (384)
Q Consensus       220 ~Vv~  223 (384)
                      .|++
T Consensus       104 ~i~~  107 (246)
T d1y8ca_         104 LITC  107 (246)
T ss_dssp             EEEE
T ss_pred             ccce
Confidence            9986

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.7e-11  Score=112.85  Aligned_cols=91  Identities=14%  Similarity=0.242  Sum_probs=77.4

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ..++.+|||||||+|.++..+++.  +.+++|+|+++.|++.|+++.   +++.++++|+.++++++            +
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~~~~~~~~d~~~l~~~~------------~  146 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLPFSD------------T  146 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCSBCT------------T
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---ccccceeeehhhccCCC------------C
Confidence            346779999999999999999998  458999999999999998874   58999999999998765            6


Q ss_pred             CcceEeeccCccccHHHHHHhcccCCCe
Q 016715          217 GFAKVVANIPFNISTDVIKQLLPMGDIF  244 (384)
Q Consensus       217 ~~d~Vv~NlPy~i~~~il~~L~~~g~~~  244 (384)
                      .||.|+++.......++.+.|+++|.++
T Consensus       147 sfD~v~~~~~~~~~~e~~rvLkpgG~l~  174 (268)
T d1p91a_         147 SMDAIIRIYAPCKAEELARVVKPGGWVI  174 (268)
T ss_dssp             CEEEEEEESCCCCHHHHHHHEEEEEEEE
T ss_pred             CEEEEeecCCHHHHHHHHHHhCCCcEEE
Confidence            8999998765566678888888877654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.22  E-value=2.6e-11  Score=106.14  Aligned_cols=83  Identities=20%  Similarity=0.235  Sum_probs=68.4

Q ss_pred             HHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhh
Q 016715          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      +..+....+.+|||||||+|..+..++++|.+|+|+|+++.+++.++++...  .+++++..+|+.+..++         
T Consensus        23 ~~~~~~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~---------   93 (198)
T d2i6ga1          23 LAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD---------   93 (198)
T ss_dssp             HHHHTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC---------
T ss_pred             HHHcccCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc---------
Confidence            3444443455999999999999999999999999999999999999987653  35799999999988753         


Q ss_pred             hccCCCcceEeeccCccc
Q 016715          212 RKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i  229 (384)
                          +.||.|+++..++.
T Consensus        94 ----~~fD~I~~~~~~~~  107 (198)
T d2i6ga1          94 ----GEYDFILSTVVMMF  107 (198)
T ss_dssp             ----CCEEEEEEESCGGG
T ss_pred             ----ccccEEEEeeeeec
Confidence                57999999876643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.1e-11  Score=117.14  Aligned_cols=112  Identities=18%  Similarity=0.222  Sum_probs=88.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC-------------CC
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-------------ID  187 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~-------------~~  187 (384)
                      +.-|.-+..|+..+++.+|++|||+|||+|++|..|++.   ..+|+++|+++++++.|+++++.             .+
T Consensus        81 iiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~  160 (324)
T d2b25a1          81 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  160 (324)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             ccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence            355777889999999999999999999999999999986   34899999999999999988642             24


Q ss_pred             CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc--cccHHHHHHhcccCCCee
Q 016715          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIFS  245 (384)
Q Consensus       188 ~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy--~i~~~il~~L~~~g~~~~  245 (384)
                      |+.++++|+.+..+..          ....||.||.++|-  .....+...|+++|.++.
T Consensus       161 nv~~~~~di~~~~~~~----------~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         161 NVDFIHKDISGATEDI----------KSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             CEEEEESCTTCCC-----------------EEEEEECSSSTTTTHHHHGGGEEEEEEEEE
T ss_pred             ceeEEecchhhccccc----------CCCCcceEeecCcCHHHHHHHHHHhccCCCEEEE
Confidence            8999999998765321          22578999999764  566777788888876643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=5.3e-11  Score=110.76  Aligned_cols=114  Identities=12%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      .+.++.+++.+++++|++|||||||+|.++..+++. |++|+||++|+..++.++++....   ..+.+...|....   
T Consensus        47 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~---  123 (291)
T d1kpia_          47 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---  123 (291)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc---
Confidence            456778899999999999999999999999999865 999999999999999999887642   3678888876432   


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCc-cc---------------cHHHHHHhcccCCCeeEEEEEeeHHH
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPF-NI---------------STDVIKQLLPMGDIFSEVVLLLQEET  255 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy-~i---------------~~~il~~L~~~g~~~~~~~~~~qke~  255 (384)
                                  .+.||.|++.=-+ ++               ...+-..|+++|.++...+.+-.+..
T Consensus       124 ------------~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~  180 (291)
T d1kpia_         124 ------------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEE  180 (291)
T ss_dssp             ------------CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHH
T ss_pred             ------------ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcch
Confidence                        2679999875333 22               23455677777777665554444433

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=2.1e-11  Score=109.26  Aligned_cols=88  Identities=23%  Similarity=0.346  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      ++.+|||||||+|.++..|++.|++|+|+|+++.|++.|+++..    ..++.+|+.++++++            +.||+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~----~~~~~~~~~~l~~~~------------~~fD~  105 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV----KNVVEAKAEDLPFPS------------GAFEA  105 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC----SCEEECCTTSCCSCT------------TCEEE
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc----ccccccccccccccc------------ccccc
Confidence            56799999999999999999999999999999999999998743    236789999988754            68999


Q ss_pred             Eeecc-Ccc-c------cHHHHHHhcccCCCe
Q 016715          221 VVANI-PFN-I------STDVIKQLLPMGDIF  244 (384)
Q Consensus       221 Vv~Nl-Py~-i------~~~il~~L~~~g~~~  244 (384)
                      |++.. -++ +      ...+.+.|+++|.++
T Consensus       106 ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~i  137 (246)
T d2avna1         106 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLI  137 (246)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeecchhhhhhhHHHHHHHHHhhcCcCcEEE
Confidence            88643 222 2      124445666666543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=5.6e-11  Score=110.07  Aligned_cols=106  Identities=15%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (384)
                      +.++.+++.+++++|++|||||||+|.++..+++. |++|+|||+|+.+++.++++....   .++.+...|..+++   
T Consensus        39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~---  115 (280)
T d2fk8a1          39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---  115 (280)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---
Confidence            45678888999999999999999999999999977 899999999999999999988643   36788888876653   


Q ss_pred             hhhhHHhhhccCCCcceEeeccCc-cc--------cHHHHHHhcccCCCeeEEE
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPF-NI--------STDVIKQLLPMGDIFSEVV  248 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy-~i--------~~~il~~L~~~g~~~~~~~  248 (384)
                                  +.||.|++---+ ++        ...+-..|+++|.++...+
T Consensus       116 ------------~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         116 ------------EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             ------------CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ------------cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence                        578998864222 22        2334556777776654443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=2.7e-11  Score=111.66  Aligned_cols=89  Identities=21%  Similarity=0.415  Sum_probs=70.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~  204 (384)
                      +++..++... ..+.+|||+|||+|.++..++..  ..+|+|+|+++.+++.|++++..+  .+++++++|..+..    
T Consensus        97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~----  171 (274)
T d2b3ta1          97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL----  171 (274)
T ss_dssp             HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG----
T ss_pred             hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc----
Confidence            4455555443 34568999999999999999886  569999999999999999998643  47999999987632    


Q ss_pred             hhhHHhhhccCCCcceEeeccCccccH
Q 016715          205 MLSLFERRKSSSGFAKVVANIPFNIST  231 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~~  231 (384)
                               ....||+||+|+||--..
T Consensus       172 ---------~~~~fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         172 ---------AGQQFAMIVSNPPYIDEQ  189 (274)
T ss_dssp             ---------TTCCEEEEEECCCCBCTT
T ss_pred             ---------CCCceeEEEecchhhhhh
Confidence                     125899999999995543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=2.5e-11  Score=111.66  Aligned_cols=112  Identities=19%  Similarity=0.328  Sum_probs=91.4

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      +.-|..+..|+.++++.+|++|||+|||+|++|..|++.   +.+|+++|+++++++.|++++...   +++.+..+|+.
T Consensus        86 iiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~  165 (266)
T d1o54a_          86 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  165 (266)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             ccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc
Confidence            455788899999999999999999999999999999986   358999999999999999998743   47888888875


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccC--ccccHHHHHHhcccCCCeeEEE
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFSEVV  248 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP--y~i~~~il~~L~~~g~~~~~~~  248 (384)
                      ...             ....+|.|+.++|  ......+...|+++|.++....
T Consensus       166 ~~~-------------~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         166 EGF-------------DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             GCC-------------SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccc-------------cccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeC
Confidence            432             1256899998875  4667788888998887654333

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.3e-11  Score=106.70  Aligned_cols=90  Identities=9%  Similarity=-0.019  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-------------------
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-------------------  185 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-------------------  185 (384)
                      .++.+.+.+.+.+.+.++.+|||+|||+|..+..|+++|.+|+|||+|+.+++.++++...                   
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            5677888888888888899999999999999999999999999999999999999887532                   


Q ss_pred             CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeecc
Q 016715          186 IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       186 ~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      ..+++++++|+.+++...           ...||.|+...
T Consensus       109 ~~~v~~~~~d~~~l~~~~-----------~~~fd~i~~~~  137 (229)
T d2bzga1         109 SGNISLYCCSIFDLPRTN-----------IGKFDMIWDRG  137 (229)
T ss_dssp             TSSEEEEESCGGGGGGSC-----------CCCEEEEEESS
T ss_pred             CCcEEEEEcchhhccccc-----------cCceeEEEEEE
Confidence            137889999998876432           35788887543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.18  E-value=2.1e-11  Score=108.24  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=75.6

Q ss_pred             hcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       137 l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      +.+++|++|||+|||+|+.+..+++.  ..+|+|||+++.|++.|+++....+|+.++.+|+...+....         .
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~---------~  122 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSG---------I  122 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTT---------T
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcccccc---------c
Confidence            56789999999999999999999987  248999999999999999988777899999999988665431         2


Q ss_pred             CCCcceEeeccCccccH-----HHHHHhcccCCC
Q 016715          215 SSGFAKVVANIPFNIST-----DVIKQLLPMGDI  243 (384)
Q Consensus       215 ~~~~d~Vv~NlPy~i~~-----~il~~L~~~g~~  243 (384)
                      ...+|.|+.+++.....     .+.+.|+++|.+
T Consensus       123 ~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l  156 (209)
T d1nt2a_         123 VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEV  156 (209)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             cceEEEEEecccChhhHHHHHHHHHHHhccCCeE
Confidence            24567777887654432     233455666654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=1.2e-10  Score=108.03  Aligned_cols=107  Identities=15%  Similarity=0.181  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      .+..+.+++.+++++|++|||||||+|.++..+++. |++|+||.+|+..++.++++....   +++++..+|+.+++  
T Consensus        48 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--  125 (285)
T d1kpga_          48 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--  125 (285)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred             HHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--
Confidence            355678888999999999999999999999998876 999999999999999999987543   48999999987764  


Q ss_pred             hhhhhHHhhhccCCCcceEeeccCc-cc--------cHHHHHHhcccCCCeeEEE
Q 016715          203 SHMLSLFERRKSSSGFAKVVANIPF-NI--------STDVIKQLLPMGDIFSEVV  248 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~NlPy-~i--------~~~il~~L~~~g~~~~~~~  248 (384)
                                   +.||.|++-=-+ ++        ...+-+.|+++|.++...+
T Consensus       126 -------------~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         126 -------------EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             -------------CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             -------------ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence                         578888764222 21        2344456667776654433

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.15  E-value=5.6e-11  Score=106.01  Aligned_cols=74  Identities=20%  Similarity=0.306  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      .++.+|||+|||+|..+..|++.    +++|+|+|+|+.|++.|++++...   .++++..+|+.+.++           
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-----------  106 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----------  106 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-----------
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-----------
Confidence            46789999999999999999974    669999999999999999987643   378888899887754           


Q ss_pred             ccCCCcceEeeccCc
Q 016715          213 KSSSGFAKVVANIPF  227 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy  227 (384)
                         +.+|.|+++.-+
T Consensus       107 ---~~~d~i~~~~~l  118 (225)
T d1im8a_         107 ---KNASMVILNFTL  118 (225)
T ss_dssp             ---CSEEEEEEESCG
T ss_pred             ---ccceeeEEeeec
Confidence               356777776444

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.14  E-value=6.1e-11  Score=109.73  Aligned_cols=106  Identities=17%  Similarity=0.263  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHh-cCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcccccc
Q 016715          125 LNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (384)
Q Consensus       125 ~~~~~~~~il~~l-~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~  199 (384)
                      .++.+++.+++.+ .+.++.+|||||||+|.++..+++.   +.+|+|+|+++.+++.|+++....+ +++++++|+.++
T Consensus        10 ~n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~   89 (281)
T d2gh1a1          10 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI   89 (281)
T ss_dssp             CCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC
T ss_pred             hhHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc
Confidence            3566777777765 4567789999999999999999985   5689999999999999999987544 799999999988


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCC
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI  243 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~  243 (384)
                      ++.             +.||+|+++..++..       ..+...|+++|.+
T Consensus        90 ~~~-------------~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l  127 (281)
T d2gh1a1          90 ELN-------------DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKI  127 (281)
T ss_dssp             CCS-------------SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEE
T ss_pred             ccc-------------CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEE
Confidence            753             469999988655332       2344556666644

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.14  E-value=7.5e-11  Score=107.61  Aligned_cols=92  Identities=18%  Similarity=0.231  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      .....+++.+...++.+|||+|||+|.+|..|+.. ..+|++||+++.|++.|++++...++++++++|+.++++.+   
T Consensus        80 ~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~---  156 (254)
T d1xtpa_          80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPP---  156 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCS---
T ss_pred             HHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCC---
Confidence            34456777777777889999999999999988866 56899999999999999999876678999999999987653   


Q ss_pred             hHHhhhccCCCcceEeeccCc-cccH
Q 016715          207 SLFERRKSSSGFAKVVANIPF-NIST  231 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy-~i~~  231 (384)
                               +.||+|+++..+ +++.
T Consensus       157 ---------~~fD~I~~~~vl~hl~d  173 (254)
T d1xtpa_         157 ---------NTYDLIVIQWTAIYLTD  173 (254)
T ss_dssp             ---------SCEEEEEEESCGGGSCH
T ss_pred             ---------CccceEEeeccccccch
Confidence                     689999988665 4443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.11  E-value=9.7e-11  Score=104.57  Aligned_cols=72  Identities=15%  Similarity=0.296  Sum_probs=62.8

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      .+++|||||||+|.++..+++.|.+|+|||+++++++.|+++..  .+++++++|+.+.+++             +.||.
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~--~~~~~~~~~~~~~~~~-------------~~fD~   84 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--DGITYIHSRFEDAQLP-------------RRYDN   84 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC--SCEEEEESCGGGCCCS-------------SCEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc--cccccccccccccccc-------------ccccc
Confidence            56789999999999999999999999999999999999998864  4799999999887653             57999


Q ss_pred             EeeccCc
Q 016715          221 VVANIPF  227 (384)
Q Consensus       221 Vv~NlPy  227 (384)
                      |++.--+
T Consensus        85 I~~~~vl   91 (225)
T d2p7ia1          85 IVLTHVL   91 (225)
T ss_dssp             EEEESCG
T ss_pred             cccccee
Confidence            9887554

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.11  E-value=1.5e-10  Score=105.18  Aligned_cols=78  Identities=19%  Similarity=0.264  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      ..++++|||||||+|..+..+++.+. +|+|||+|+.|++.|+++....   .++.++++|+...++.           .
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-----------~   90 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-----------L   90 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-----------C
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-----------c
Confidence            35788999999999999999998865 7999999999999999887542   3799999999776543           1


Q ss_pred             CCCcceEeeccCc
Q 016715          215 SSGFAKVVANIPF  227 (384)
Q Consensus       215 ~~~~d~Vv~NlPy  227 (384)
                      .+.||+|+++...
T Consensus        91 ~~~fD~V~~~~~l  103 (252)
T d1ri5a_          91 GKEFDVISSQFSF  103 (252)
T ss_dssp             SSCEEEEEEESCG
T ss_pred             cccceEEEEccee
Confidence            2579999987554

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.9e-10  Score=108.76  Aligned_cols=90  Identities=13%  Similarity=0.224  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhc-----------CCCCeEE
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA-----------SIDQLKV  191 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~-----------~~~~v~~  191 (384)
                      .....+..|++.+.++++++|||||||+|.++..++.. ++ +++|||+++.+++.|++...           ..+++++
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~  214 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  214 (328)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence            67899999999999999999999999999999998876 44 79999999999999887543           1358999


Q ss_pred             EEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       192 ~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N  224 (384)
                      ++||+.+.++.+.++          ..|+|+.|
T Consensus       215 ~~gd~~~~~~~~~~~----------~advi~~~  237 (328)
T d1nw3a_         215 ERGDFLSEEWRERIA----------NTSVIFVN  237 (328)
T ss_dssp             EECCTTSHHHHHHHH----------HCSEEEEC
T ss_pred             EECcccccccccccC----------cceEEEEc
Confidence            999999988765322          34677665

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.3e-11  Score=105.54  Aligned_cols=77  Identities=10%  Similarity=0.091  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      ..++.+|||||||+|.++..++.. +.+|+|||+++.|++.|++++...  ++++++++|+.++++.+            
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~------------  125 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP------------  125 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS------------
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccc------------
Confidence            456789999999999999988765 558999999999999999987643  47899999999987643            


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      +.||+|+++-.+
T Consensus       126 ~~fD~I~~~~~l  137 (222)
T d2ex4a1         126 DSYDVIWIQWVI  137 (222)
T ss_dssp             SCEEEEEEESCG
T ss_pred             cccccccccccc
Confidence            689999887544

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.6e-10  Score=102.82  Aligned_cols=85  Identities=19%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ..+|||||||+|.++..|+.+  +.+++|+|+|+.+++.|++++..+   +++.+++.+.....+.....      ...+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~------~~~~  135 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE------ESEI  135 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT------CCSC
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh------cccC
Confidence            458999999999999999987  789999999999999999998754   37888887765533221100      1235


Q ss_pred             CcceEeeccCccccHH
Q 016715          217 GFAKVVANIPFNISTD  232 (384)
Q Consensus       217 ~~d~Vv~NlPy~i~~~  232 (384)
                      .||.|++|+||.-..+
T Consensus       136 ~fD~ivsNPPY~~~~e  151 (250)
T d2h00a1         136 IYDFCMCNPPFFANQL  151 (250)
T ss_dssp             CBSEEEECCCCC----
T ss_pred             ceeEEEecCcccccch
Confidence            7999999999976543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.06  E-value=2.3e-10  Score=99.18  Aligned_cols=120  Identities=16%  Similarity=0.225  Sum_probs=86.7

Q ss_pred             CCHHHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccc
Q 016715          125 LNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVK  198 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~  198 (384)
                      +...+.+.+++.+... .+.+|||+.||||.++.+++.+|+ +|+.||.|...+..++++++..    ....++..|+.+
T Consensus        26 t~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~  105 (183)
T d2ifta1          26 TGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD  105 (183)
T ss_dssp             --CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH
T ss_pred             CcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccc
Confidence            4456777788877543 678999999999999999999988 8999999999999999987632    256777777665


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCccc--cHHHHHHhcccCCCeeEEEEEeeH
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGDIFSEVVLLLQE  253 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L~~~g~~~~~~~~~~qk  253 (384)
                      .....         .....||+|+.+|||..  ..+++..+...+.+-...+++++.
T Consensus       106 ~l~~~---------~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         106 FLKQP---------QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             HTTSC---------CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccc---------ccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            43211         12356999999999955  456677766654433445555543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=1.4e-10  Score=106.10  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~  205 (384)
                      ..++.+.+  .+|++|||+|||+|.++..+++++ ++|+|+|+|+.+++.+++++..+   ++++++++|+.++..    
T Consensus        98 r~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~----  171 (260)
T d2frna1          98 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----  171 (260)
T ss_dssp             HHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----
T ss_pred             HHHHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc----
Confidence            34455543  478999999999999999999887 49999999999999999998743   369999999988753    


Q ss_pred             hhHHhhhccCCCcceEeeccCcccc---HHHHHHhcccC
Q 016715          206 LSLFERRKSSSGFAKVVANIPFNIS---TDVIKQLLPMG  241 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlPy~i~---~~il~~L~~~g  241 (384)
                               .+.+|.|+.|+|....   ...+..+.++|
T Consensus       172 ---------~~~~D~Ii~~~p~~~~~~l~~a~~~l~~gG  201 (260)
T d2frna1         172 ---------ENIADRILMGYVVRTHEFIPKALSIAKDGA  201 (260)
T ss_dssp             ---------CSCEEEEEECCCSSGGGGHHHHHHHEEEEE
T ss_pred             ---------CCCCCEEEECCCCchHHHHHHHHhhcCCCC
Confidence                     2579999999886433   23444454544

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=4.2e-10  Score=100.88  Aligned_cols=107  Identities=11%  Similarity=0.117  Sum_probs=79.5

Q ss_pred             HHHHHHHH---HhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch
Q 016715          128 EINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (384)
Q Consensus       128 ~~~~~il~---~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~  201 (384)
                      ++.+.|+.   .+.+++|++|||+|||+|+.+..|++. |  .+|+|+|+++.+++.++++....+++..+.+|+.....
T Consensus        57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~  136 (227)
T d1g8aa_          57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE  136 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG
T ss_pred             HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccc
Confidence            45555654   345789999999999999999999997 3  58999999999999999998877889999999876543


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCccccH-----HHHHHhcccCCC
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDI  243 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~-----~il~~L~~~g~~  243 (384)
                      ..         .....+|.|+.+++..-..     .+...|+++|.+
T Consensus       137 ~~---------~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~l  174 (227)
T d1g8aa_         137 YR---------ALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYG  174 (227)
T ss_dssp             GT---------TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             cc---------ccccceEEEEEEccccchHHHHHHHHHHhcccCCeE
Confidence            21         1235788999998764332     223345555543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.03  E-value=5.4e-10  Score=100.37  Aligned_cols=74  Identities=14%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             HHHHHHHH---HhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch
Q 016715          128 EINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (384)
Q Consensus       128 ~~~~~il~---~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~  201 (384)
                      ++.+.|+.   .+.+++|++|||+|||+|+.+..+++.+  ..|+|||+++.|++.|+++....+++..+.+|+...+.
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~  136 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE  136 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGG
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcc
Confidence            44444544   3457899999999999999999999974  58999999999999999998777899999999887653

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=6.8e-10  Score=105.86  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=88.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhh
Q 016715          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~  203 (384)
                      .+.+++.+++++...++++|||+.||+|.+|..|++.+.+|+|||.++.+++.|+++...+  .|++++.+|..+.....
T Consensus       197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~  276 (358)
T d1uwva2         197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ  276 (358)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred             hhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh
Confidence            3555566677778888999999999999999999999999999999999999999997644  49999999988743221


Q ss_pred             hhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccC
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g  241 (384)
                      .        .....+|+||.|+|..-..+.+.++...+
T Consensus       277 ~--------~~~~~~d~vilDPPR~G~~~~~~~l~~~~  306 (358)
T d1uwva2         277 P--------WAKNGFDKVLLDPARAGAAGVMQQIIKLE  306 (358)
T ss_dssp             G--------GGTTCCSEEEECCCTTCCHHHHHHHHHHC
T ss_pred             h--------hhhccCceEEeCCCCccHHHHHHHHHHcC
Confidence            0        12356899999999988888888887644

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=5.7e-10  Score=102.41  Aligned_cols=92  Identities=18%  Similarity=0.252  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~  203 (384)
                      .+++.+++.....+..+|+|+|||+|..+..+++. .++|+|+|+|+.+++.|++|...+   .++.+..+|..+.... 
T Consensus        97 ~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~-  175 (271)
T d1nv8a_          97 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE-  175 (271)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG-
T ss_pred             hhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc-
Confidence            34555555554445568999999999999999876 569999999999999999998753   3678889998775322 


Q ss_pred             hhhhHHhhhccCCCcceEeeccCcccc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                                ..+.||+||+|+||--.
T Consensus       176 ----------~~~~fDlIVsNPPYI~~  192 (271)
T d1nv8a_         176 ----------KFASIEMILSNPPYVKS  192 (271)
T ss_dssp             ----------GTTTCCEEEECCCCBCG
T ss_pred             ----------ccCcccEEEEcccccCc
Confidence                      22689999999999644

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=4.4e-10  Score=104.16  Aligned_cols=108  Identities=15%  Similarity=0.210  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC------CeEEEEccccccch
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID------QLKVLQEDFVKCHI  201 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~------~v~~~~gD~~~~~~  201 (384)
                      ...+.+.+.+...++.+|||||||+|.++..|++.|.+|+|+|+|+.|++.|+++.....      ...+..+|+...+.
T Consensus        43 ~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          43 EYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            344556666666677899999999999999999999999999999999999998764321      34455666655432


Q ss_pred             hhhhhhHHhhhccCCCcceEeec---cCcc------------ccHHHHHHhcccCCCe
Q 016715          202 RSHMLSLFERRKSSSGFAKVVAN---IPFN------------ISTDVIKQLLPMGDIF  244 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~N---lPy~------------i~~~il~~L~~~g~~~  244 (384)
                      ..         ...+.||.|++-   +.+-            ....+.+.|+++|.++
T Consensus       123 ~~---------~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li  171 (292)
T d1xvaa_         123 DV---------PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV  171 (292)
T ss_dssp             HS---------CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred             cc---------CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEE
Confidence            11         022568888752   2221            2344556677777554

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=8.5e-10  Score=103.26  Aligned_cols=85  Identities=18%  Similarity=0.285  Sum_probs=66.1

Q ss_pred             HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      +.|.+.....++++|||||||+|.++..+++.|+ +|+|+|.++.+...++.....  .+++.++++|+.+++.+.    
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~----  100 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV----  100 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC----
T ss_pred             HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCcc----
Confidence            3444444555789999999999999999999986 899999999886544433322  358999999999987643    


Q ss_pred             HHhhhccCCCcceEeeccCc
Q 016715          208 LFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy  227 (384)
                              ..+|+|+++...
T Consensus       101 --------~~~D~Ivse~~~  112 (311)
T d2fyta1         101 --------EKVDVIISEWMG  112 (311)
T ss_dssp             --------SCEEEEEECCCB
T ss_pred             --------ccceEEEEeeee
Confidence                    689999997654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=5.9e-10  Score=105.19  Aligned_cols=97  Identities=25%  Similarity=0.247  Sum_probs=73.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~  199 (384)
                      ..+.+-....+..+ ..+|++|||+|||+|.++..++..|+ +|+++|+++.+++.+++++..+   ++++++++|+.+.
T Consensus       129 flDqr~~r~~~~~~-~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~  207 (324)
T d2as0a2         129 FLDQRENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE  207 (324)
T ss_dssp             CSTTHHHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             ccchhhHHHHHHhh-cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh
Confidence            33444444444322 35789999999999999999999876 7999999999999999998754   3789999998874


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ....     .   .....||+|+.|+|+..
T Consensus       208 ~~~~-----~---~~~~~fD~Vi~DpP~~~  229 (324)
T d2as0a2         208 MEKL-----Q---KKGEKFDIVVLDPPAFV  229 (324)
T ss_dssp             HHHH-----H---HTTCCEEEEEECCCCSC
T ss_pred             hHHH-----H---hccCCCCchhcCCcccc
Confidence            3211     0   13468999999999754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=1e-09  Score=96.62  Aligned_cols=77  Identities=16%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ++..|||||||+|..+..+|+.  +.+++|||+++.++..+.++...  .+|+.++++|+..+.  +.+        ..+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~--~~~--------~~~   98 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT--DVF--------EPG   98 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH--HHC--------CTT
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh--ccc--------Cch
Confidence            4568999999999999999998  56899999999999999887753  359999999998764  111        235


Q ss_pred             CcceEeeccCc
Q 016715          217 GFAKVVANIPF  227 (384)
Q Consensus       217 ~~d~Vv~NlPy  227 (384)
                      .+|.|+.+.|-
T Consensus        99 ~~d~v~i~fp~  109 (204)
T d2fcaa1          99 EVKRVYLNFSD  109 (204)
T ss_dssp             SCCEEEEESCC
T ss_pred             hhhcccccccc
Confidence            68888776543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=9.9e-10  Score=103.65  Aligned_cols=82  Identities=18%  Similarity=0.361  Sum_probs=64.6

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhh
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      .|.......++++|||||||+|.++..+++.|+ +|+|+|.++ ++..|++....   .++++++++|+.++++++    
T Consensus        29 aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~----  103 (328)
T d1g6q1_          29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPF----  103 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS----
T ss_pred             HHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcc----
Confidence            344444445789999999999999999999986 899999996 66777766543   248999999999987654    


Q ss_pred             HHhhhccCCCcceEeeccC
Q 016715          208 LFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlP  226 (384)
                              +.+|+|++++.
T Consensus       104 --------~~~D~i~se~~  114 (328)
T d1g6q1_         104 --------PKVDIIISEWM  114 (328)
T ss_dssp             --------SCEEEEEECCC
T ss_pred             --------cceeEEEEEec
Confidence                    67999998754

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.4e-09  Score=97.24  Aligned_cols=86  Identities=20%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~  205 (384)
                      .+.+.+.+.+. .+|++|||||||+|..+..+++.+ .+|++||+|+.+++.|+++.... .++.++.+|+.......  
T Consensus        41 ~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--  117 (229)
T d1zx0a1          41 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL--  117 (229)
T ss_dssp             HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS--
T ss_pred             HHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccc--
Confidence            34445555554 467899999999999999999874 68999999999999999998654 37888888877653321  


Q ss_pred             hhHHhhhccCCCcceEeec
Q 016715          206 LSLFERRKSSSGFAKVVAN  224 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~N  224 (384)
                              ..+.||.|+.+
T Consensus       118 --------~~~~fD~i~fD  128 (229)
T d1zx0a1         118 --------PDGHFDGILYD  128 (229)
T ss_dssp             --------CTTCEEEEEEC
T ss_pred             --------ccccccceeec
Confidence                    22578888754

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.90  E-value=1.4e-08  Score=98.94  Aligned_cols=168  Identities=17%  Similarity=0.220  Sum_probs=114.9

Q ss_pred             CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---------------CCcEEEEeCCHHHHHH
Q 016715          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGL  178 (384)
Q Consensus       114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---------------~~~V~avE~d~~~~~~  178 (384)
                      ..++..|| |.|+..+++.|++.+.+.++.+|+|..||+|.+...+.++               ...++|+|+++.++..
T Consensus       136 ~~~k~~G~-f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~l  214 (425)
T d2okca1         136 DKKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTL  214 (425)
T ss_dssp             CTTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHH
T ss_pred             hhhccchh-hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHH
Confidence            45667888 8899999999999999988999999999999999887764               1259999999999999


Q ss_pred             HHHHhcC----CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccH-----------------------
Q 016715          179 VRERFAS----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-----------------------  231 (384)
Q Consensus       179 a~~~~~~----~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~-----------------------  231 (384)
                      ++.++.-    ..+..+.++|.+..+.             ...||+|++||||....                       
T Consensus       215 a~~n~~l~g~~~~~~~i~~~d~l~~~~-------------~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi  281 (425)
T d2okca1         215 ASMNLYLHGIGTDRSPIVCEDSLEKEP-------------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFL  281 (425)
T ss_dssp             HHHHHHHTTCCSSCCSEEECCTTTSCC-------------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHH
T ss_pred             HHhhhhhcCCccccceeecCchhhhhc-------------ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHH
Confidence            9877542    1256678888876432             25799999999994321                       


Q ss_pred             -HHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeeee---cccceEEEEeCCCCCCCCCCCceEEEEEE
Q 016715          232 -DVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF---YSEPEYKFKVPRTNFFPQPKVDAAVVTFK  307 (384)
Q Consensus       232 -~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~---~~~~~~~~~v~~~~F~P~PkV~s~vv~l~  307 (384)
                       ..+..|.++|.    +.+++...+..+   .  +  .+..   +.++   -+.+..+..+|...|.+ -.|.++++.++
T Consensus       282 ~~~~~~Lk~~G~----~~iI~p~~~L~~---~--~--~~~~---iR~~Ll~~~~i~aIi~LP~~~F~~-t~v~t~Ilil~  346 (425)
T d2okca1         282 QHMMLMLKTGGR----AAVVLPDNVLFE---A--G--AGET---IRKRLLQDFNLHTILRLPTGIFYA-QGVKANVLFFS  346 (425)
T ss_dssp             HHHHHHEEEEEE----EEEEEEHHHHHC---S--T--HHHH---HHHHHHHHEEEEEEEECCSSSSSS-TTCCEEEEEEE
T ss_pred             HHHHHhcCCCCe----EEEEechHHhhh---h--h--hHHH---HHHHHHHhcchhHhhcCCcccccC-CCCCeEEEEEE
Confidence             22233444442    233343333211   0  0  0001   1111   13455667889888877 67889999998


Q ss_pred             EcC
Q 016715          308 LKQ  310 (384)
Q Consensus       308 ~~~  310 (384)
                      ..+
T Consensus       347 K~k  349 (425)
T d2okca1         347 KGQ  349 (425)
T ss_dssp             ESS
T ss_pred             CCC
Confidence            754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.89  E-value=2.2e-09  Score=100.09  Aligned_cols=98  Identities=19%  Similarity=0.186  Sum_probs=74.8

Q ss_pred             ccCCHHHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~  197 (384)
                      |+-.....+.+.+.+. ..++.+|||++||+|.++..++..|++|++||.|+.+++.|++++..+    .+++++++|+.
T Consensus       113 f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~  192 (309)
T d2igta1         113 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM  192 (309)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred             ccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH
Confidence            3444444455554443 446789999999999999999999999999999999999999987632    26999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ++--...        .....||+||.|+|..
T Consensus       193 ~~l~~~~--------~~~~~fD~IilDPP~f  215 (309)
T d2igta1         193 KFIQREE--------RRGSTYDIILTDPPKF  215 (309)
T ss_dssp             HHHHHHH--------HHTCCBSEEEECCCSE
T ss_pred             HhHHHHh--------hcCCCCCEEEECCCcc
Confidence            7632110        1246899999999953

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=1.1e-09  Score=95.89  Aligned_cols=83  Identities=19%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      ++.+|||||||+|.++..+    .+++|||+++.+++.++++     ++.++++|+.++++.+            +.||+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l~~~~------------~~fD~   94 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR-----GVFVLKGTAENLPLKD------------ESFDF   94 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT-----TCEEEECBTTBCCSCT------------TCEEE
T ss_pred             CCCeEEEECCCCccccccc----ceEEEEeCChhhccccccc-----cccccccccccccccc------------ccccc
Confidence            4568999999999998777    3579999999999999875     6899999999998654            68999


Q ss_pred             EeeccCcccc-------HHHHHHhcccCCCe
Q 016715          221 VVANIPFNIS-------TDVIKQLLPMGDIF  244 (384)
Q Consensus       221 Vv~NlPy~i~-------~~il~~L~~~g~~~  244 (384)
                      |+++.-.+..       ..+.+.|.++|.++
T Consensus        95 I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~  125 (208)
T d1vlma_          95 ALMVTTICFVDDPERALKEAYRILKKGGYLI  125 (208)
T ss_dssp             EEEESCGGGSSCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccccccccchhhhhhcCCCCceEE
Confidence            9987544222       23344555555443

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.88  E-value=2.3e-09  Score=94.39  Aligned_cols=77  Identities=13%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+..|||||||+|..+..+|+.  ...++|+|+++.++..|.++...  .+|+.++++|+.++.  +.+        ...
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~--~~~--------~~~  100 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT--DYF--------EDG  100 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG--GTS--------CTT
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh--hhc--------cCC
Confidence            4568999999999999999998  56899999999999999887653  469999999998864  111        236


Q ss_pred             CcceEeeccCc
Q 016715          217 GFAKVVANIPF  227 (384)
Q Consensus       217 ~~d~Vv~NlPy  227 (384)
                      .+|.|+.+.|-
T Consensus       101 ~~~~i~i~fPd  111 (204)
T d1yzha1         101 EIDRLYLNFSD  111 (204)
T ss_dssp             CCSEEEEESCC
T ss_pred             ceehhcccccc
Confidence            78999888764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=2.2e-09  Score=100.67  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      .++++|||||||+|.++..+++.|+ +|+|+|.++.+ ..+++....   .++++++++|+.+++++.            
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~------------   98 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPV------------   98 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSS------------
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccccc------------
Confidence            3688999999999999999999986 79999999765 445444432   247999999999987653            


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +.+|+|+++..
T Consensus        99 ~~~D~ivs~~~  109 (316)
T d1oria_          99 EKVDIIISEWM  109 (316)
T ss_dssp             SCEEEEEECCC
T ss_pred             ceeEEEeeeee
Confidence            67999988754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=8.2e-09  Score=99.64  Aligned_cols=60  Identities=15%  Similarity=0.252  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~  184 (384)
                      +.+..+..|++.++++++++|||||||+|.++..+|.. ++ +|+|||+++.+++.|+++..
T Consensus       200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~  261 (406)
T d1u2za_         200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE  261 (406)
T ss_dssp             BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999976 54 89999999999999988754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=2.1e-09  Score=101.04  Aligned_cols=96  Identities=18%  Similarity=0.131  Sum_probs=73.8

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~  200 (384)
                      +..|.+....+++   ..+|++|||+|||+|.++..++..+++|+++|+|+.+++.+++++..+  ++++++++|+.++.
T Consensus       130 ~flDqr~~r~~~~---~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~  206 (318)
T d1wxxa2         130 AYLDQRENRLYME---RFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL  206 (318)
T ss_dssp             CCGGGHHHHHHGG---GCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH
T ss_pred             cchhhhhhHHHHH---HhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHh
Confidence            4445555444433   336889999999999999999877789999999999999999998754  48999999998753


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ...     .   .....||+|+.|+|...
T Consensus       207 ~~~-----~---~~~~~fD~Vi~DpP~~~  227 (318)
T d1wxxa2         207 RRL-----E---KEGERFDLVVLDPPAFA  227 (318)
T ss_dssp             HHH-----H---HTTCCEEEEEECCCCSC
T ss_pred             hhh-----H---hhhcCCCEEEEcCCccc
Confidence            211     0   13468999999999743

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=7.1e-09  Score=90.25  Aligned_cols=94  Identities=11%  Similarity=0.301  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhh
Q 016715          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (384)
Q Consensus       127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~  203 (384)
                      |-+++.+++++.+.+++.+||++||+|..|..+++.  +.+|+|+|.|+.|++.+++++... +++.++++++.+++...
T Consensus         9 pVll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2           9 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL   88 (192)
T ss_dssp             CTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred             chHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence            456788999999999999999999999999999987  569999999999999999998764 48999999998865321


Q ss_pred             hhhhHHhhhccCCCcceEeeccCc
Q 016715          204 HMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      .      . ...+.+|.|+.++.+
T Consensus        89 ~------~-~~~~~vdgIl~DlGv  105 (192)
T d1m6ya2          89 K------T-LGIEKVDGILMDLGV  105 (192)
T ss_dssp             H------H-TTCSCEEEEEEECSC
T ss_pred             H------H-cCCCCcceeeeccch
Confidence            0      0 123678999988775

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=5.9e-09  Score=98.00  Aligned_cols=99  Identities=14%  Similarity=0.196  Sum_probs=75.6

Q ss_pred             ccCCCcccCCHHHHHHHHHHh----cCCCCCEEEEEcCcchHHHHHHHHc-------CCcEEEEeCCHHHHHHHHHHhcC
Q 016715          117 KSLGQHYMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA-------GATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       117 ~~~gq~fl~~~~~~~~il~~l----~~~~~~~VLEIG~G~G~lt~~La~~-------~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      ...|+ +++++.+++.|+..+    ...++.+|||.|||+|.+...+..+       ..+++|+|+|+.+++.|+.+...
T Consensus        90 ~~~g~-~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~  168 (328)
T d2f8la1          90 IQVNH-QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL  168 (328)
T ss_dssp             CCGGG-CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCe-EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH
Confidence            34466 678888877666543    4567789999999999999888753       12799999999999999887653


Q ss_pred             -CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          186 -IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       186 -~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                       ..+..+.++|......             ...||+||+|+||..
T Consensus       169 ~~~~~~~~~~d~~~~~~-------------~~~fD~vi~NPPy~~  200 (328)
T d2f8la1         169 QRQKMTLLHQDGLANLL-------------VDPVDVVISDLPVGY  200 (328)
T ss_dssp             HTCCCEEEESCTTSCCC-------------CCCEEEEEEECCCSE
T ss_pred             hhhhhhhhccccccccc-------------cccccccccCCCCCC
Confidence             3467788888776532             257999999999953

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.75  E-value=4.8e-09  Score=92.42  Aligned_cols=86  Identities=21%  Similarity=0.294  Sum_probs=70.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      .|++.+++.|++.+...++++|||.|||+|.+...+.+.   ..+++|+|+++..+..+       ....++++|....+
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------~~~~~~~~~~~~~~   74 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE   74 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------ccceeeeeehhccc
Confidence            478899999999999999999999999999998888765   45799999998654322       35678899988765


Q ss_pred             hhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      .             ...+|.|++|+||..
T Consensus        75 ~-------------~~~fd~ii~npP~~~   90 (223)
T d2ih2a1          75 P-------------GEAFDLILGNPPYGI   90 (223)
T ss_dssp             C-------------SSCEEEEEECCCCCC
T ss_pred             c-------------ccccceecccCcccc
Confidence            3             257999999999943

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.72  E-value=1.4e-08  Score=91.83  Aligned_cols=83  Identities=19%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhh
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~  204 (384)
                      .+.+++.++..+..+|||||||+|.++..++++  +.+++++|+ +.+++.+++++...   ++++++.+|+.+..    
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~----  143 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL----  143 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc----
Confidence            456777777778889999999999999999998  458999997 67899998887642   48999999987632    


Q ss_pred             hhhHHhhhccCCCcceEeeccCc
Q 016715          205 MLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                                .+.+|+|+.+--+
T Consensus       144 ----------~~~~D~v~~~~vl  156 (253)
T d1tw3a2         144 ----------PRKADAIILSFVL  156 (253)
T ss_dssp             ----------SSCEEEEEEESCG
T ss_pred             ----------ccchhheeecccc
Confidence                      1468888765433

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=8.7e-08  Score=95.71  Aligned_cols=172  Identities=14%  Similarity=0.147  Sum_probs=107.5

Q ss_pred             CcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--------------------CCcEEEEeCCHH
Q 016715          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--------------------GATVLAIEKDQH  174 (384)
Q Consensus       115 ~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--------------------~~~V~avE~d~~  174 (384)
                      .++..|| |.|+..+++.|++.+.+.++.+|+|..||+|.+...+.+.                    ...++|+|+++.
T Consensus       139 ~~~~~Gq-fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~  217 (524)
T d2ar0a1         139 TKSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  217 (524)
T ss_dssp             ------C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             hccccch-hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHH
Confidence            4556788 8899999999999999999999999999999998776553                    125899999999


Q ss_pred             HHHHHHHHhcCCC-------CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc------------------
Q 016715          175 MVGLVRERFASID-------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI------------------  229 (384)
Q Consensus       175 ~~~~a~~~~~~~~-------~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i------------------  229 (384)
                      +...++.++.-.+       +-.+..+|...-+..           ....||+|++||||..                  
T Consensus       218 ~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~-----------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~  286 (524)
T d2ar0a1         218 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-----------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ  286 (524)
T ss_dssp             HHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH-----------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH
T ss_pred             HHHHHHHHHHhhcccccccccchhhhhhhhhhccc-----------ccccceeEEecCCccccccccchhhhcccccccc
Confidence            9999987764221       112333443332211           2367999999999942                  


Q ss_pred             ---cHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEE
Q 016715          230 ---STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTF  306 (384)
Q Consensus       230 ---~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l  306 (384)
                         ....+..|.++|.    +.+++...+..+--   .+ +...+  -+.+ -+.+..+..+|...|++ -.|.++++-|
T Consensus       287 ~~Fi~~~l~~Lk~gGr----~aiIlP~~~Lf~~~---~~-~~iR~--~Ll~-~~~i~aII~LP~~~F~~-t~i~t~Il~l  354 (524)
T d2ar0a1         287 LCFMQHIIETLHPGGR----AAVVVPDNVLFEGG---KG-TDIRR--DLMD-KCHLHTILRLPTGIFYA-QGVKTNVLFF  354 (524)
T ss_dssp             HHHHHHHHHHEEEEEE----EEEEEEHHHHHCCT---HH-HHHHH--HHHH-HEEEEEEEECCSSCSSS-CSCCEEEEEE
T ss_pred             HHHHHHHHHhccccCc----EEEEEehHHhhhhh---hh-HHHHH--HHHH-cCCceEEEECCCCcCCC-CCCCeEEEEE
Confidence               2233445555553    34444443321100   00 00000  0111 13455677889999988 5789999999


Q ss_pred             EEcC
Q 016715          307 KLKQ  310 (384)
Q Consensus       307 ~~~~  310 (384)
                      +..+
T Consensus       355 ~K~k  358 (524)
T d2ar0a1         355 TKGT  358 (524)
T ss_dssp             EEBC
T ss_pred             ECCC
Confidence            8754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.67  E-value=1.9e-08  Score=94.31  Aligned_cols=96  Identities=13%  Similarity=0.199  Sum_probs=72.6

Q ss_pred             ccCCH-HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccc
Q 016715          123 YMLNS-EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDF  196 (384)
Q Consensus       123 fl~~~-~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~  196 (384)
                      +..|. .....++..+  .+|++|||++||+|.++..++..|+ +|++||+++.+++.+++++..+    .+++++++|+
T Consensus       127 lflDqR~~r~~l~~~~--~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~  204 (317)
T d2b78a2         127 IFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV  204 (317)
T ss_dssp             SCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH
T ss_pred             CcHHHHHHHHHHHHHh--hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH
Confidence            33443 3445565544  3688999999999999999888877 7999999999999999998633    3799999999


Q ss_pred             cccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      .+.--..     .   .....||+||.|+|..
T Consensus       205 ~~~l~~~-----~---~~~~~fD~Ii~DPP~f  228 (317)
T d2b78a2         205 FDYFKYA-----R---RHHLTYDIIIIDPPSF  228 (317)
T ss_dssp             HHHHHHH-----H---HTTCCEEEEEECCCCC
T ss_pred             HHHHHHH-----H---hhcCCCCEEEEcChhh
Confidence            7652110     0   1346799999999953

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.3e-08  Score=93.18  Aligned_cols=83  Identities=17%  Similarity=0.195  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--------CCcEEEEeCCHHHHHHHHHHhcCCC---Ce--EEEEccccccchhhhhhh
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--------GATVLAIEKDQHMVGLVRERFASID---QL--KVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--------~~~V~avE~d~~~~~~a~~~~~~~~---~v--~~~~gD~~~~~~~~~~~~  207 (384)
                      +..+|||||||+|.++..++..        +.+++|||+++.|++.+++++...+   ++  .+...++.++...     
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  114 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSR-----  114 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHH-----
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcch-----
Confidence            3348999999999999888753        2368999999999999999886543   33  3344444332110     


Q ss_pred             HHhhhccCCCcceEeeccCccc
Q 016715          208 LFERRKSSSGFAKVVANIPFNI  229 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~i  229 (384)
                      ... ....+.||+|++...++.
T Consensus       115 ~~~-~~~~~~fD~I~~~~~l~~  135 (280)
T d1jqea_         115 MLE-KKELQKWDFIHMIQMLYY  135 (280)
T ss_dssp             HTT-SSSCCCEEEEEEESCGGG
T ss_pred             hcc-cCCCCceeEEEEccceec
Confidence            000 013468999998755433

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.6e-07  Score=81.73  Aligned_cols=98  Identities=18%  Similarity=0.165  Sum_probs=72.4

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (384)
Q Consensus       124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~  197 (384)
                      ...+.....+...+.....++|||||||+|+.|..+++.   +.+|+++|.++...+.|++++...   ++++++.||+.
T Consensus        42 ~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~  121 (219)
T d2avda1          42 MMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL  121 (219)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh
Confidence            355655444444444556789999999999999999985   569999999999999999988642   47999999998


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      +.....     ... ...++||.|+.+.-.
T Consensus       122 e~l~~~-----~~~-~~~~~fD~ifiD~dk  145 (219)
T d2avda1         122 ETLDEL-----LAA-GEAGTFDVAVVDADK  145 (219)
T ss_dssp             HHHHHH-----HHT-TCTTCEEEEEECSCS
T ss_pred             hcchhh-----hhh-cccCCccEEEEeCCH
Confidence            854221     000 123679999987544

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=1.1e-06  Score=77.36  Aligned_cols=88  Identities=16%  Similarity=0.197  Sum_probs=65.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      ++..++...   +.++|||||||+|+.|..+++.   +.+|+++|+++.+++.+++++...   ++++++.||+.+....
T Consensus        47 lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~  123 (214)
T d2cl5a1          47 IMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ  123 (214)
T ss_dssp             HHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred             HHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccc
Confidence            444444444   4579999999999999999975   569999999999999999887642   3799999999885321


Q ss_pred             hhhhhHHhhhccCCCcceEeecc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      .     ... .....+|.|+.+-
T Consensus       124 l-----~~~-~~~~~~D~ifiD~  140 (214)
T d2cl5a1         124 L-----KKK-YDVDTLDMVFLDH  140 (214)
T ss_dssp             H-----HHH-SCCCCEEEEEECS
T ss_pred             h-----hhc-ccccccceeeecc
Confidence            0     000 1235689998763

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.1e-08  Score=86.99  Aligned_cols=46  Identities=11%  Similarity=0.158  Sum_probs=40.4

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~  185 (384)
                      .++.+|||||||+|.++..++..+. +|+|+|+++.+++.|++++..
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhh
Confidence            4678999999999999988887755 799999999999999998754

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.32  E-value=1.1e-06  Score=79.36  Aligned_cols=68  Identities=25%  Similarity=0.288  Sum_probs=56.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccc
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVK  198 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~  198 (384)
                      ...+++..+.....+|||||||+|.++..++++  +.+++++|+ +.+++.+++++..   .+++.++.+|+.+
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~  142 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK  142 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc
Confidence            456667777777789999999999999999998  568999997 7889999887753   2479999999876

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.26  E-value=2.1e-06  Score=73.54  Aligned_cols=91  Identities=15%  Similarity=0.254  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      -+++.+++.+.+.+|..++|..+|.|..+..+++.+.+|+|+|.|+.++..++...  .+++.++++++.++....    
T Consensus         5 Vll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~--~~~~~~~~~~f~~~~~~l----   78 (182)
T d1wg8a2           5 VLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH--LPGLTVVQGNFRHLKRHL----   78 (182)
T ss_dssp             TTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--CTTEEEEESCGGGHHHHH----
T ss_pred             hHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc--ccceeEeehHHHHHHHHH----
Confidence            45778889999999999999999999999999999889999999999999998753  358999999998864321    


Q ss_pred             HHhhhccCCCcceEeeccCc
Q 016715          208 LFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy  227 (384)
                        .. ...+.+|.|+.++.+
T Consensus        79 --~~-~~~~~vdgIl~DLGv   95 (182)
T d1wg8a2          79 --AA-LGVERVDGILADLGV   95 (182)
T ss_dssp             --HH-TTCSCEEEEEEECSC
T ss_pred             --HH-cCCCccCEEEEEccC
Confidence              10 123568999998855

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.23  E-value=2.2e-06  Score=76.07  Aligned_cols=89  Identities=12%  Similarity=0.092  Sum_probs=65.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (384)
Q Consensus       129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (384)
                      ++..++...   ..++|||||+|+|+.|..+++.   +.+|+++|.++...+.|++++...   ++++++.||+.+.-..
T Consensus        50 ~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~  126 (227)
T d1susa1          50 FLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDE  126 (227)
T ss_dssp             HHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHH
Confidence            334444443   4679999999999999999974   569999999999999999988643   3799999999875322


Q ss_pred             hhhhhHHhhhccCCCcceEeecc
Q 016715          203 SHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      -     .......+.||.|+.+.
T Consensus       127 l-----~~~~~~~~~fD~iFiDa  144 (227)
T d1susa1         127 M-----IKDEKNHGSYDFIFVDA  144 (227)
T ss_dssp             H-----HHCGGGTTCBSEEEECS
T ss_pred             H-----HhccccCCceeEEEecc
Confidence            1     00001135799999764

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.00  E-value=6.4e-06  Score=75.08  Aligned_cols=76  Identities=20%  Similarity=0.289  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhc------------CCCCeEEEEccccccchhhhhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFA------------SIDQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~------------~~~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ....+||.||+|.|.....+++.. .+|++||+|+.+++.+++.+.            ..++++++.+|+.++--.    
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~----  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----  146 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc----
Confidence            356799999999999999988774 489999999999999997653            235899999999875321    


Q ss_pred             hHHhhhccCCCcceEeeccCc
Q 016715          207 SLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                              .+.+|+||.+++-
T Consensus       147 --------~~~yDvIi~D~~~  159 (276)
T d1mjfa_         147 --------NRGFDVIIADSTD  159 (276)
T ss_dssp             --------CCCEEEEEEECCC
T ss_pred             --------cCCCCEEEEeCCC
Confidence                    2679999988654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.94  E-value=5.4e-06  Score=74.22  Aligned_cols=85  Identities=18%  Similarity=0.244  Sum_probs=65.9

Q ss_pred             HHHHhcCCCC--CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---C--------CCeEEEEcccccc
Q 016715          133 LAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I--------DQLKVLQEDFVKC  199 (384)
Q Consensus       133 il~~l~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~--------~~v~~~~gD~~~~  199 (384)
                      +.++++.+.+  .+|||.-||.|..+..++..|++|+++|.++.+...++..+..   .        .+++++++|+.++
T Consensus        78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~  157 (250)
T d2oyra1          78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA  157 (250)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred             HHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH
Confidence            4444544433  4899999999999999999999999999999988777764431   1        2789999998886


Q ss_pred             chhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                      ...           ..+.||+|+.+++|.
T Consensus       158 L~~-----------~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         158 LTD-----------ITPRPQVVYLDPMFP  175 (250)
T ss_dssp             STT-----------CSSCCSEEEECCCCC
T ss_pred             Hhc-----------cCCCCCEEEECCCCc
Confidence            432           125689999999993

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.94  E-value=1.3e-05  Score=74.29  Aligned_cols=90  Identities=14%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             CCHHHHHHHHHHh---cCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc-------CCCCeEEE
Q 016715          125 LNSEINDQLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA-------SIDQLKVL  192 (384)
Q Consensus       125 ~~~~~~~~il~~l---~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~-------~~~~v~~~  192 (384)
                      .++.....++.++   .....++||.||.|.|.....+++.  ..+|++||+|+.+++.+++.+.       ..++++++
T Consensus        58 ~de~~Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~  137 (312)
T d1uira_          58 RDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLV  137 (312)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE
T ss_pred             ccHHHHHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEE
Confidence            3444444444432   2345679999999999999999876  3589999999999999998752       24689999


Q ss_pred             EccccccchhhhhhhHHhhhccCCCcceEeecc
Q 016715          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      .+|+.++-..           ....||+||.++
T Consensus       138 ~~Da~~~l~~-----------~~~~yDvIi~D~  159 (312)
T d1uira_         138 IDDARAYLER-----------TEERYDVVIIDL  159 (312)
T ss_dssp             ESCHHHHHHH-----------CCCCEEEEEEEC
T ss_pred             EchHHHHhhh-----------cCCcccEEEEeC
Confidence            9999886322           236799999775

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=3.7e-05  Score=70.42  Aligned_cols=88  Identities=14%  Similarity=0.146  Sum_probs=71.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhh
Q 016715          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML  206 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~  206 (384)
                      ..+..+.+.+|++|||+.||+|.=|..++..   ...|+|+|+++.-++.+++++...  .++.+...|+..+...+.  
T Consensus        85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~--  162 (293)
T d2b9ea1          85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP--  162 (293)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG--
T ss_pred             ccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc--
Confidence            3555678889999999999999999998875   458999999999999999988754  489999999988765431  


Q ss_pred             hHHhhhccCCCcceEeeccCcc
Q 016715          207 SLFERRKSSSGFAKVVANIPFN  228 (384)
Q Consensus       207 ~~~~~~~~~~~~d~Vv~NlPy~  228 (384)
                             ....||.|+.+.|=.
T Consensus       163 -------~~~~fD~VL~DaPCS  177 (293)
T d2b9ea1         163 -------RYHEVHYILLDPSCS  177 (293)
T ss_dssp             -------GGTTEEEEEECCCCC
T ss_pred             -------ccceeeEEeecCccc
Confidence                   125799999998843

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.77  E-value=4.2e-05  Score=70.08  Aligned_cols=91  Identities=13%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc------CCCCeEEEE
Q 016715          125 LNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQ  193 (384)
Q Consensus       125 ~~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~  193 (384)
                      .|+.+...++.+..   ....++||-||.|.|.....+++.  ..+|++||+|+.+++.+++.+.      ..++++++.
T Consensus        70 ~De~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~  149 (295)
T d1inla_          70 KDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI  149 (295)
T ss_dssp             TTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE
T ss_pred             CchhhhhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh
Confidence            34455555554332   234579999999999999999987  3589999999999999998653      246999999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      +|+.++--.           ....||+||.+++
T Consensus       150 ~Da~~~l~~-----------~~~~yDvIi~D~~  171 (295)
T d1inla_         150 ANGAEYVRK-----------FKNEFDVIIIDST  171 (295)
T ss_dssp             SCHHHHGGG-----------CSSCEEEEEEEC-
T ss_pred             hhHHHHHhc-----------CCCCCCEEEEcCC
Confidence            999886422           2467999998764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.6e-05  Score=71.66  Aligned_cols=47  Identities=9%  Similarity=0.032  Sum_probs=39.1

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      ...|.+|||||||+|.++...+.. +.+|+|+|+++.|++.+++.+..
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            346789999999999888655544 66899999999999999987753

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=9.8e-05  Score=66.87  Aligned_cols=76  Identities=13%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc------CCCCeEEEEccccccchhhhhhhHHhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ...++||-||-|.|..++.+++.  ..+|+.||+|+.+++.+++.+.      ..++++++.+|+.+.-..         
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~---------  144 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK---------  144 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT---------
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh---------
Confidence            35579999999999999999986  3589999999999999998752      246999999999875322         


Q ss_pred             hccCCCcceEeeccC
Q 016715          212 RKSSSGFAKVVANIP  226 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlP  226 (384)
                        ....+|+|+.+++
T Consensus       145 --~~~~yDvIi~D~~  157 (274)
T d1iy9a_         145 --SENQYDVIMVDST  157 (274)
T ss_dssp             --CCSCEEEEEESCS
T ss_pred             --cCCCCCEEEEcCC
Confidence              2467999998754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00012  Score=66.60  Aligned_cols=91  Identities=15%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc------CCCCeEEEE
Q 016715          125 LNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQ  193 (384)
Q Consensus       125 ~~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~  193 (384)
                      .++.....++.+..   ....++||-||-|.|..+..+++.  ..+|+.||+|+.+++.+++.+.      ..++++++.
T Consensus        59 ~de~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~  138 (285)
T d2o07a1          59 RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV  138 (285)
T ss_dssp             TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE
T ss_pred             CCHHHHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE
Confidence            34455555554332   335579999999999999999987  4589999999999999998653      246999999


Q ss_pred             ccccccchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      +|+.++--.           ..+.+|+||.+++
T Consensus       139 ~Da~~~l~~-----------~~~~yDvIi~D~~  160 (285)
T d2o07a1         139 GDGFEFMKQ-----------NQDAFDVIITDSS  160 (285)
T ss_dssp             SCHHHHHHT-----------CSSCEEEEEEECC
T ss_pred             ccHHHHHhc-----------CCCCCCEEEEcCC
Confidence            999876422           2367999998863

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.51  E-value=9.2e-05  Score=68.14  Aligned_cols=76  Identities=17%  Similarity=0.269  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhh
Q 016715          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      ...++||-||-|.|...+.+++..  .+|+.||+|+.+++.+++.+..      .++++++.+|+.++--.         
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~---------  175 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---------  175 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---------
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh---------
Confidence            345799999999999999999873  5899999999999999987632      36899999999875321         


Q ss_pred             hccCCCcceEeeccC
Q 016715          212 RKSSSGFAKVVANIP  226 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlP  226 (384)
                        ....||+||.+++
T Consensus       176 --~~~~yDvII~D~~  188 (312)
T d2b2ca1         176 --HKNEFDVIITDSS  188 (312)
T ss_dssp             --CTTCEEEEEECCC
T ss_pred             --CCCCCCEEEEcCC
Confidence              3467999998864

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.49  E-value=0.0002  Score=65.29  Aligned_cols=91  Identities=14%  Similarity=0.224  Sum_probs=67.1

Q ss_pred             CHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhc------CCCCeEEEEc
Q 016715          126 NSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA------SIDQLKVLQE  194 (384)
Q Consensus       126 ~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~g  194 (384)
                      ++.....++.++.   ....++||-||-|.|...+.+++. + .+|++||+|+.+++.+++.+.      ..++++++.+
T Consensus        62 de~~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~  141 (290)
T d1xj5a_          62 DECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG  141 (290)
T ss_dssp             THHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES
T ss_pred             chhHHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEc
Confidence            3344444444332   234579999999999999999987 3 489999999999999998652      2469999999


Q ss_pred             cccccchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      |+.+.-...          ..+.||+||.+++
T Consensus       142 Da~~~l~~~----------~~~~yDvIi~D~~  163 (290)
T d1xj5a_         142 DGVAFLKNA----------AEGSYDAVIVDSS  163 (290)
T ss_dssp             CHHHHHHTS----------CTTCEEEEEECCC
T ss_pred             cHHHHHhhc----------cccCccEEEEcCC
Confidence            998753221          2357999998754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.41  E-value=0.0002  Score=66.05  Aligned_cols=92  Identities=14%  Similarity=0.231  Sum_probs=72.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFV  197 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~  197 (384)
                      +..++..-...+..+.+.+|++|||+.||.|.=|..++..   ...++++|+++.-+..+++++..  ..++.+.+.|+.
T Consensus        98 ~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~  177 (313)
T d1ixka_          98 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL  177 (313)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG
T ss_pred             EEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccc
Confidence            3333444455666778999999999999999999999876   34799999999999998887764  348888888887


Q ss_pred             ccchhhhhhhHHhhhccCCCcceEeeccC
Q 016715          198 KCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                      .++..            ...||.|+.+.|
T Consensus       178 ~~~~~------------~~~fD~ILvDaP  194 (313)
T d1ixka_         178 HIGEL------------NVEFDKILLDAP  194 (313)
T ss_dssp             GGGGG------------CCCEEEEEEECC
T ss_pred             ccccc------------cccccEEEEccc
Confidence            76532            267999998877

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.31  E-value=0.00027  Score=62.11  Aligned_cols=59  Identities=15%  Similarity=0.241  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 016715          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (384)
Q Consensus       125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~  184 (384)
                      .+..+++++++... .+|+.|||..||+|+.+.+..+.|.+.+|+|+++..++.|++++.
T Consensus       197 kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            56789999998886 578999999999999999999999999999999999999999874

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00041  Score=59.99  Aligned_cols=71  Identities=15%  Similarity=0.252  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ++++|+|||+|.|.=+..++-.  ..+++.+|.+..-+..+++....  ..|++++++++++...             ..
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-------------~~  131 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-------------EP  131 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-------------CS
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-------------cc
Confidence            4679999999999999988865  56999999999888888776543  3589999999998743             24


Q ss_pred             CcceEeec
Q 016715          217 GFAKVVAN  224 (384)
Q Consensus       217 ~~d~Vv~N  224 (384)
                      .||+|++-
T Consensus       132 ~fD~V~sR  139 (207)
T d1jsxa_         132 PFDGVISR  139 (207)
T ss_dssp             CEEEEECS
T ss_pred             ccceehhh
Confidence            68988763

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00064  Score=57.41  Aligned_cols=85  Identities=18%  Similarity=0.293  Sum_probs=59.6

Q ss_pred             HHHHhc-CCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhH
Q 016715          133 LAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       133 il~~l~-~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      |.+... .+++.+|||+||++|..+..+.+.   ...|+++|+.+         ....+++.++++|+.+..........
T Consensus        13 I~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~i~~~~~~~~d~~~~~~~~~~~~~   83 (180)
T d1ej0a_          13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDPIVGVDFLQGDFRDELVMKALLER   83 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCCCTTEEEEESCTTSHHHHHHHHHH
T ss_pred             HHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccccCCceEeecccccchhhhhhhhh
Confidence            333333 357889999999999999999886   34799999764         22346899999999875433221111


Q ss_pred             HhhhccCCCcceEeeccCcccc
Q 016715          209 FERRKSSSGFAKVVANIPFNIS  230 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy~i~  230 (384)
                          .....+|+|+++...+.+
T Consensus        84 ----~~~~~~DlVlSD~ap~~s  101 (180)
T d1ej0a_          84 ----VGDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             ----HTTCCEEEEEECCCCCCC
T ss_pred             ----ccCcceeEEEecccchhc
Confidence                134679999999776554

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.15  E-value=0.0012  Score=58.30  Aligned_cols=65  Identities=6%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc
Q 016715          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (384)
Q Consensus       129 ~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~  198 (384)
                      ....+++... .....+|||||||+|.++..++++  +.+++..|+ +..++    .....++++++.+|+.+
T Consensus        68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~----~~~~~~ri~~~~gd~~~  135 (244)
T d1fp1d2          68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE----NAPPLSGIEHVGGDMFA  135 (244)
T ss_dssp             HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT----TCCCCTTEEEEECCTTT
T ss_pred             HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh----ccCCCCCeEEecCCccc
Confidence            3455666666 355679999999999999999988  558888886 33332    22233689999999865

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.11  E-value=0.00042  Score=62.74  Aligned_cols=62  Identities=15%  Similarity=0.175  Sum_probs=55.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      ...+..++++++.... .+|+.|||..||+|+.+.+..+.|.+.+|+|+++++++.+++++..
T Consensus       233 t~kP~~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         233 ARFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             SCCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CcCchHHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            3456789999998775 4789999999999999999999999999999999999999999864

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.08  E-value=0.00022  Score=62.87  Aligned_cols=83  Identities=11%  Similarity=0.144  Sum_probs=57.3

Q ss_pred             cccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHhcCCCCe
Q 016715          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFASIDQL  189 (384)
Q Consensus       116 ~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avE~d~~~~~~a~~~~~~~~~v  189 (384)
                      -.|.|...+..|.-+..+-+.+.-.+.++|||||++.|..+..++..      .++|+++|+++........   ..+++
T Consensus        55 ~~w~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---~~~~I  131 (232)
T d2bm8a1          55 YQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---DMENI  131 (232)
T ss_dssp             CEETTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---GCTTE
T ss_pred             ccccceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---cccce
Confidence            35678777777776655544443334579999999999988777642      4589999998754332221   23589


Q ss_pred             EEEEccccccch
Q 016715          190 KVLQEDFVKCHI  201 (384)
Q Consensus       190 ~~~~gD~~~~~~  201 (384)
                      ++++||..+...
T Consensus       132 ~~i~gDs~~~~~  143 (232)
T d2bm8a1         132 TLHQGDCSDLTT  143 (232)
T ss_dssp             EEEECCSSCSGG
T ss_pred             eeeecccccHHH
Confidence            999999876543

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.05  E-value=0.00034  Score=62.17  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=56.9

Q ss_pred             cCCCCCEEEEEcCcchHHHHHHHHcC------------------------------------------CcEEEEeCCHHH
Q 016715          138 AVQEGDIVLEIGPGTGSLTNVLLNAG------------------------------------------ATVLAIEKDQHM  175 (384)
Q Consensus       138 ~~~~~~~VLEIG~G~G~lt~~La~~~------------------------------------------~~V~avE~d~~~  175 (384)
                      ....+..++|--||+|++..+.+-..                                          ..++|.|+|+.+
T Consensus        47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a  126 (249)
T d1o9ga_          47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA  126 (249)
T ss_dssp             SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence            33445579999999999987765311                                          246788889888


Q ss_pred             HHHHH---HHhcC---CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          176 VGLVR---ERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       176 ~~~a~---~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ++.++   +++..   ..-+.+.++|+.+......+       .......+||+|+||
T Consensus       127 i~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~-------~~~~~~GlIVtNPPY  177 (249)
T d1o9ga_         127 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV-------LAGSAPDVVLTDLPY  177 (249)
T ss_dssp             HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH-------HTTCCCSEEEEECCG
T ss_pred             HHHHHHHHHHHHHcCCCceeeeeecchhccCcchhc-------cCCCCCCEEEeCCCc
Confidence            88874   45432   23688999998765432211       022457899999999

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.99  E-value=0.00062  Score=60.49  Aligned_cols=62  Identities=15%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      ...+..+++++++... .+|+.|||..||+|+.+.+..+.|.+.+|+|+|+..++.+++++..
T Consensus       190 ~~kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         190 TQKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             TCCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            3467889999999875 5789999999999999999999999999999999999999998863

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00083  Score=60.81  Aligned_cols=94  Identities=15%  Similarity=0.239  Sum_probs=69.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccc
Q 016715          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK  198 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~  198 (384)
                      +..+...-...+..+++.++++|||+.+|.|.=|..+++.+  ..|+|+|+++.-+..+++++...+  ++.+...|...
T Consensus        84 ~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~  163 (284)
T d1sqga2          84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  163 (284)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             EEeccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccccc
Confidence            33444445556667888999999999999999999999874  479999999999999988876543  55555555443


Q ss_pred             cchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy  227 (384)
                      ....           ....||.|+.+.|=
T Consensus       164 ~~~~-----------~~~~fd~IL~DaPC  181 (284)
T d1sqga2         164 SQWC-----------GEQQFDRILLDAPC  181 (284)
T ss_dssp             HHHH-----------TTCCEEEEEEECCC
T ss_pred             chhc-----------ccccccEEEEeccc
Confidence            2221           22579999988874

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.92  E-value=0.0014  Score=59.40  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=56.5

Q ss_pred             EEEEEcCcchHHHHHHHHcCCcEE-EEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEe
Q 016715          144 IVLEIGPGTGSLTNVLLNAGATVL-AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~~~~~V~-avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv  222 (384)
                      +|||+.||.|.++..+.+.|.+++ ++|+|+.+++..+.+..    -.++++|+.+++..+           .+..|+++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----~~~~~~Di~~~~~~~-----------~~~~dll~   66 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDE-----------FPKCDGII   66 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----SEEEESCTTTSCGGG-----------SCCCSEEE
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCCccCChhhCCHhH-----------cccccEEe
Confidence            699999999999999988888655 99999999998888862    356889999987653           25689999


Q ss_pred             eccCc
Q 016715          223 ANIPF  227 (384)
Q Consensus       223 ~NlPy  227 (384)
                      +.+|=
T Consensus        67 ~g~PC   71 (324)
T d1dcta_          67 GGPPC   71 (324)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            88763

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.71  E-value=0.0025  Score=57.95  Aligned_cols=71  Identities=17%  Similarity=0.228  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcchHHHHHHHHcCCcE-EEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNAGATV-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~~~~V-~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .+.+|||+.||.|.++..|.+.|.++ .++|+|+.+++..+.+...     ..++|+.++...+           ....|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~-----~~~~Di~~~~~~~-----------~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE-----KPEGDITQVNEKT-----------IPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC-----CCBSCGGGSCGGG-----------SCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC-----CCcCchhcCchhh-----------cceee
Confidence            46799999999999999998888864 5799999999999988743     2368888876543           25689


Q ss_pred             eEeeccCc
Q 016715          220 KVVANIPF  227 (384)
Q Consensus       220 ~Vv~NlPy  227 (384)
                      ++++.+|=
T Consensus        74 ll~ggpPC   81 (327)
T d2c7pa1          74 ILCAGFPC   81 (327)
T ss_dssp             EEEEECCC
T ss_pred             eeeccccc
Confidence            99998873

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.69  E-value=0.0017  Score=61.10  Aligned_cols=83  Identities=14%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCcchHHHHHHHH-cCC-cEEEEeCCHHHHHHHHHHhcCC-----------------CCeEEEEccccccch
Q 016715          141 EGDIVLEIGPGTGSLTNVLLN-AGA-TVLAIEKDQHMVGLVRERFASI-----------------DQLKVLQEDFVKCHI  201 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~-~~~-~V~avE~d~~~~~~a~~~~~~~-----------------~~v~~~~gD~~~~~~  201 (384)
                      .+.+|||..||+|..+...+. .+. +|+++|+|+..++.+++++..+                 ..+.+.+.|+.....
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            467999999999999996655 454 8999999999999999987532                 135566677655432


Q ss_pred             hhhhhhHHhhhccCCCcceEeeccCccccHHHHH
Q 016715          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~  235 (384)
                      .           ....||+|..+ ||.-..+.+.
T Consensus       125 ~-----------~~~~fDvIDiD-PfGs~~pfld  146 (375)
T d2dula1         125 E-----------RHRYFHFIDLD-PFGSPMEFLD  146 (375)
T ss_dssp             H-----------STTCEEEEEEC-CSSCCHHHHH
T ss_pred             h-----------hcCcCCcccCC-CCCCcHHHHH
Confidence            2           23579999888 5877777765

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.62  E-value=0.0014  Score=57.65  Aligned_cols=75  Identities=9%  Similarity=0.149  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .+.+|+|||+|.|.=+..++-.  ..+++.+|.+..=+..++....  ...|+.++++.++++.....         ...
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~---------~~~  140 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKD---------VRE  140 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTT---------TTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccccc---------ccc
Confidence            4679999999999999988864  5699999999987777766544  23589999999987653321         125


Q ss_pred             CcceEeec
Q 016715          217 GFAKVVAN  224 (384)
Q Consensus       217 ~~d~Vv~N  224 (384)
                      .||+|++=
T Consensus       141 ~~D~v~sR  148 (239)
T d1xdza_         141 SYDIVTAR  148 (239)
T ss_dssp             CEEEEEEE
T ss_pred             cceEEEEh
Confidence            78988863

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.59  E-value=0.0035  Score=55.23  Aligned_cols=53  Identities=13%  Similarity=0.365  Sum_probs=41.6

Q ss_pred             CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc
Q 016715          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~  198 (384)
                      ...+|||||||+|.++..++++  +.+++..|. +..++.+    ...++++++.+|+.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~~~rv~~~~gD~f~  134 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SGSNNLTYVGGDMFT  134 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CCBTTEEEEECCTTT
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cccCceEEEecCccc
Confidence            3468999999999999999988  568999997 3443322    233699999999876

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0022  Score=58.48  Aligned_cols=72  Identities=18%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             CEEEEEcCcchHHHHHHHHcCC--c-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          143 DIVLEIGPGTGSLTNVLLNAGA--T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~~~~--~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .+|+|+.||.|.++..|...|.  + |.++|+|+.+++..+.+.   ++..++.+|+.++...+.         .....|
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~---~~~~~~~~di~~~~~~~~---------~~~~~D   70 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEEF---------DRLSFD   70 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHHH---------HHHCCS
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC---CCCCcccCchhhCCHhHc---------CCCCcc
Confidence            4799999999999988877775  4 569999999999888875   466788899988876542         113679


Q ss_pred             eEeeccC
Q 016715          220 KVVANIP  226 (384)
Q Consensus       220 ~Vv~NlP  226 (384)
                      ++++.+|
T Consensus        71 ll~ggpP   77 (343)
T d1g55a_          71 MILMSPP   77 (343)
T ss_dssp             EEEECCC
T ss_pred             EEEeecc
Confidence            9999887

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.39  E-value=0.0054  Score=53.81  Aligned_cols=64  Identities=11%  Similarity=0.193  Sum_probs=46.1

Q ss_pred             HHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc
Q 016715          130 NDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (384)
Q Consensus       130 ~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~  198 (384)
                      ...++..... ....+|||||||+|.++..++++  +.+++.+|+-+. ++    .....++++++.+|+.+
T Consensus        69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~----~~~~~~r~~~~~~d~~~  135 (243)
T d1kyza2          69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE----DAPSYPGVEHVGGDMFV  135 (243)
T ss_dssp             HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT----TCCCCTTEEEEECCTTT
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh----hcccCCceEEecccccc
Confidence            3445555544 33578999999999999999998  568999998542 22    12223589999999865

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.22  E-value=0.025  Score=46.01  Aligned_cols=50  Identities=28%  Similarity=0.399  Sum_probs=41.8

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      .++..+++++++||-+|||. |.++..+++. |++|+++|.++.-++.+++.
T Consensus        18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc
Confidence            35566788999999999994 7777777765 88999999999999999875

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.21  E-value=0.0097  Score=55.39  Aligned_cols=82  Identities=23%  Similarity=0.341  Sum_probs=51.1

Q ss_pred             ccCCC--cccCCHHHHH--------HHHHH---hcCCCCCEEEEEcCcchHHHHHHHHc---------CCcEEEEeCCHH
Q 016715          117 KSLGQ--HYMLNSEIND--------QLAAA---AAVQEGDIVLEIGPGTGSLTNVLLNA---------GATVLAIEKDQH  174 (384)
Q Consensus       117 ~~~gq--~fl~~~~~~~--------~il~~---l~~~~~~~VLEIG~G~G~lt~~La~~---------~~~V~avE~d~~  174 (384)
                      ..+|.  .|.|.|.+-.        .+++.   ++..+.-.|+|+|+|+|.++.-++..         ..+++.+|.++.
T Consensus        42 ~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~  121 (365)
T d1zkda1          42 DPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV  121 (365)
T ss_dssp             --------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred             CCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchh
Confidence            44555  6999877622        22222   23223458999999999999877653         226899999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEcccccc
Q 016715          175 MVGLVRERFASIDQLKVLQEDFVKC  199 (384)
Q Consensus       175 ~~~~a~~~~~~~~~v~~~~gD~~~~  199 (384)
                      +.+.-++++....++.++ .|..++
T Consensus       122 L~~~Q~~~l~~~~~i~w~-~~~~~~  145 (365)
T d1zkda1         122 LRQKQQTLLAGIRNIHWH-DSFEDV  145 (365)
T ss_dssp             HHHHHHHHSTTCSSEEEE-SSGGGS
T ss_pred             HHHHHHHHhcccccceec-cChhhc
Confidence            988888877655566543 344433

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.02  E-value=0.0039  Score=52.79  Aligned_cols=59  Identities=20%  Similarity=0.147  Sum_probs=39.4

Q ss_pred             ccCCHHHHHHHHHHhcCC-CCCEEEEEcCcchHHH----HHHHHc----C--CcEEEEeCCHHHHHHHHH
Q 016715          123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLT----NVLLNA----G--ATVLAIEKDQHMVGLVRE  181 (384)
Q Consensus       123 fl~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt----~~La~~----~--~~V~avE~d~~~~~~a~~  181 (384)
                      |..++...+.+.+.+... +.-+||++|||+|.-.    ..+.+.    +  .+++|.|+|+.+++.|++
T Consensus         5 FFRd~~~f~~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2           5 FFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             TTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CcCCcHHHHHHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            444555555555544332 3349999999999844    333332    1  269999999999999985

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.78  E-value=0.02  Score=46.79  Aligned_cols=50  Identities=20%  Similarity=0.222  Sum_probs=41.1

Q ss_pred             HHHHhcCCCCCEEEEEcCc-chHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      .+...++++|++||-+|+| .|.++..+++. |++|+++|.++.-++.+++.
T Consensus        19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            3445677899999999999 57777777765 99999999999988888765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.50  E-value=0.038  Score=46.43  Aligned_cols=49  Identities=22%  Similarity=0.300  Sum_probs=40.7

Q ss_pred             HHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      ++..++++|++||-+|||. |.++..+++. ++ +|+++|.++.-++.|++.
T Consensus        18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            5667888999999999998 6677777764 55 899999999999988865

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.49  E-value=0.046  Score=42.58  Aligned_cols=69  Identities=14%  Similarity=0.188  Sum_probs=46.6

Q ss_pred             EEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       144 ~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      +|+=+|+  |.++..+++    .|.+|+.+|.|++.++.+++.+    ++.+++||+.+...-..        ......+
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l~~--------~~i~~a~   67 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLED--------AGIEDAD   67 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHH--------TTTTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----hhhhccCcccchhhhhh--------cChhhhh
Confidence            4666666  555555553    4889999999999999887653    57899999988654221        1124566


Q ss_pred             eEeeccC
Q 016715          220 KVVANIP  226 (384)
Q Consensus       220 ~Vv~NlP  226 (384)
                      .+++-.+
T Consensus        68 ~vv~~t~   74 (132)
T d1lssa_          68 MYIAVTG   74 (132)
T ss_dssp             EEEECCS
T ss_pred             hhcccCC
Confidence            7766433

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.055  Score=44.17  Aligned_cols=49  Identities=24%  Similarity=0.341  Sum_probs=38.5

Q ss_pred             HHHhcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          134 AAAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      .+..++++|++||-.|+  |.|.++..+++. |++|++++.+++-.+.+++.
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~   72 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN   72 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc
Confidence            34446778999999996  457777777775 88999999898877877753

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.22  E-value=0.091  Score=45.69  Aligned_cols=84  Identities=15%  Similarity=0.254  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+.+|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+...+++.++.+|+.+...-+.+.+....  ..+.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~G~   82 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEK--AFGP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH--HHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHH--HhCC
Confidence            57888888876652   344556669999999999999888888776556899999999876533322222211  2257


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|++|.|-.
T Consensus        83 iDiLVnnAg   91 (251)
T d1zk4a1          83 VSTLVNNAG   91 (251)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEeccc
Confidence            899998853

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.03  E-value=0.1  Score=42.71  Aligned_cols=87  Identities=14%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          141 EGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       141 ~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      +..+|+=||+|. |..++..+.. |++|+++|.++..++.++..+..  +++....+-..+...            ....
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--~~~~~~~~~~~l~~~------------~~~a   96 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIETA------------VAEA   96 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHHHH------------HHTC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc--cceeehhhhhhHHHh------------hccC
Confidence            356999999997 6666666665 99999999999999998887653  556655544333211            1457


Q ss_pred             ceEeec-------cCccccHHHHHHhcccC
Q 016715          219 AKVVAN-------IPFNISTDVIKQLLPMG  241 (384)
Q Consensus       219 d~Vv~N-------lPy~i~~~il~~L~~~g  241 (384)
                      |+||+-       .|.-++.+.+..++++.
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk~GS  126 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMRTGS  126 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTC
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcCCCc
Confidence            899875       36778888888887754

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.97  E-value=0.13  Score=44.99  Aligned_cols=82  Identities=13%  Similarity=0.199  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~  216 (384)
                      +|+.+|=.|++.|.   ++..|++.|++|+.+|.+++-++.+.+.+...+++.++.+|+.+..--+.+. ...+   ..+
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIA---KHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHH---HcC
Confidence            57889999987653   2334455699999999999988888888766667888999987754322222 2222   225


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|.+|.|.
T Consensus        82 ~iD~lVnnA   90 (268)
T d2bgka1          82 KLDIMFGNV   90 (268)
T ss_dssp             CCCEEEECC
T ss_pred             Ccceecccc
Confidence            789998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.73  E-value=0.082  Score=42.60  Aligned_cols=50  Identities=26%  Similarity=0.276  Sum_probs=41.0

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      .++..+++++++||=+|+|. |.++..+++. |++|+++|.++.-++.+++.
T Consensus        19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            34567788999999999986 7677777765 88999999999998888764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.48  E-value=0.17  Score=44.07  Aligned_cols=82  Identities=11%  Similarity=0.115  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhh-hhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~  215 (384)
                      +|+.+|=.|.+.|.   ++..|++.|++|+.+|.+++-++.+.+.+... .++..+.+|+.+..--. .+....+   ..
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~---~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR---DF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH---HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence            57889988987663   45666777999999999999888888777543 47888999987754322 2222222   22


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|.
T Consensus        81 g~iDilVnna   90 (260)
T d1zema1          81 GKIDFLFNNA   90 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCeehhhh
Confidence            5789988774

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.43  E-value=0.14  Score=41.10  Aligned_cols=76  Identities=17%  Similarity=0.241  Sum_probs=51.2

Q ss_pred             EEEEEcCc--chHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715          144 IVLEIGPG--TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (384)
Q Consensus       144 ~VLEIG~G--~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V  221 (384)
                      +|.=||+|  -+.++..|.+.|.+|++.|.+++.++.+++.-    .+.....+...                ....|+|
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~----~~~~~~~~~~~----------------~~~~DiI   61 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ----LVDEAGQDLSL----------------LQTAKII   61 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT----SCSEEESCGGG----------------GTTCSEE
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh----ccceeeeeccc----------------ccccccc
Confidence            56778888  35566777778999999999999888777642    11111112111                1457888


Q ss_pred             eeccCccccHHHHHHhcc
Q 016715          222 VANIPFNISTDVIKQLLP  239 (384)
Q Consensus       222 v~NlPy~i~~~il~~L~~  239 (384)
                      |...|.....+++..+.+
T Consensus        62 ilavp~~~~~~vl~~l~~   79 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLIP   79 (165)
T ss_dssp             EECSCHHHHHHHHHHHGG
T ss_pred             cccCcHhhhhhhhhhhhh
Confidence            888887777777777765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.42  E-value=0.15  Score=44.13  Aligned_cols=83  Identities=18%  Similarity=0.212  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      +++.+|=.|++.| ++..+    ++.|++|+.++.+++-++.+.+.+... .++..+.+|+.+...-..+.+....  ..
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~--~~   85 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT--EH   85 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH--HC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--hc
Confidence            5778888897665 44444    445899999999999888888777644 4788999999875433222222211  23


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|++|.|..
T Consensus        86 g~iDilvnnag   96 (251)
T d2c07a1          86 KNVDILVNNAG   96 (251)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceeeeeccc
Confidence            67899998853

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.29  E-value=0.22  Score=43.32  Aligned_cols=85  Identities=15%  Similarity=0.188  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +|++||=.|++.|   .++..|++.|++|+.++.++.-++.+.+.+... .++.++.+|+.+...-+.+...... ...+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH-VFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-HTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH-HhCC
Confidence            5789999998766   345566677999999999998877777666543 4788889999876543322221111 1224


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|+++.|..
T Consensus        84 ~idilinnag   93 (258)
T d1ae1a_          84 KLNILVNNAG   93 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CcEEEecccc
Confidence            6788887643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.21  Score=43.20  Aligned_cols=84  Identities=13%  Similarity=0.123  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .|+.+|=-|++.|.   ++..+++.|++|+.++.+++-++.+.+.+.. .+++..+.+|..+..--+.+.+....  ..+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~--~~g   83 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA--EIG   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH--HcC
Confidence            57888888988764   4566677799999999999988877776653 35788999999887543322222211  236


Q ss_pred             CcceEeeccC
Q 016715          217 GFAKVVANIP  226 (384)
Q Consensus       217 ~~d~Vv~NlP  226 (384)
                      ..|++|.|-.
T Consensus        84 ~idilinnag   93 (244)
T d1yb1a_          84 DVSILVNNAG   93 (244)
T ss_dssp             CCSEEEECCC
T ss_pred             CCceeEeecc
Confidence            7899988743

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.11  Score=42.12  Aligned_cols=50  Identities=26%  Similarity=0.344  Sum_probs=39.8

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      .++..+++++++||=+|||+ |.++..+++. |+ +|+++|.++.-++.+++.
T Consensus        18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            44566788999999999987 5555566655 77 799999999999988764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.22  E-value=0.073  Score=43.70  Aligned_cols=46  Identities=26%  Similarity=0.377  Sum_probs=38.5

Q ss_pred             hcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          137 AAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       137 l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      ..+++|++||-+|||. |.++..+++. |+ +|+++|.++.-++.+++.
T Consensus        24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          24 PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            3567899999999985 7788888876 76 799999999999988764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.11  E-value=0.097  Score=42.87  Aligned_cols=101  Identities=20%  Similarity=0.253  Sum_probs=62.6

Q ss_pred             HHHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhH
Q 016715          132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (384)
Q Consensus       132 ~il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~  208 (384)
                      ..++..++++|++||=+|||. |.++..+++. |+ +|+++|.++.-.+.+++.    +-..++.-  .+-++.+...+.
T Consensus        18 ~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~~~i~~--~~~~~~~~v~~~   91 (174)
T d1jqba2          18 HGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GATDILNY--KNGHIEDQVMKL   91 (174)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCSEEECG--GGSCHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cccccccc--cchhHHHHHHHH
Confidence            345667888999999999997 8888888886 66 799999999988888764    11223322  222222211111


Q ss_pred             HhhhccCCCcceEeeccCcc-ccHHHHHHhcccCC
Q 016715          209 FERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGD  242 (384)
Q Consensus       209 ~~~~~~~~~~d~Vv~NlPy~-i~~~il~~L~~~g~  242 (384)
                          ..+..+|+||-...-. .....+..+.++|.
T Consensus        92 ----t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~  122 (174)
T d1jqba2          92 ----TNGKGVDRVIMAGGGSETLSQAVKMVKPGGI  122 (174)
T ss_dssp             ----TTTSCEEEEEECSSCTTHHHHHHHHEEEEEE
T ss_pred             ----hhccCcceEEEccCCHHHHHHHHHHHhcCCE
Confidence                1234589888765532 23444555555443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.13  Score=44.89  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      +++.||=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+...   +++..+++|+.+-.--+.+.+....  .
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~--~   86 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS--Q   86 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH--h
Confidence            57899999988664   33445556999999999998888777665432   3678889999875433222222221  2


Q ss_pred             CCCcceEeeccCc
Q 016715          215 SSGFAKVVANIPF  227 (384)
Q Consensus       215 ~~~~d~Vv~NlPy  227 (384)
                      .+..|++|.|...
T Consensus        87 ~g~iD~lVnnAg~   99 (257)
T d1xg5a_          87 HSGVDICINNAGL   99 (257)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             cCCCCEEEecccc
Confidence            2568999988543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.21  Score=43.30  Aligned_cols=80  Identities=20%  Similarity=0.263  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+++|=-|++.|   .++..|++.|++|+.+|.+++.++.+.+..   +++..+.+|+.+...-+.+.+...  ...+.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~--~~~g~   79 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETI--RRFGR   79 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---CCCeEEEccCCCHHHHHHHHHHHH--HhcCC
Confidence            5789999998766   334556667999999999998887776654   478889999877543222221111  12256


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|.
T Consensus        80 iDilVnnA   87 (250)
T d1ydea1          80 LDCVVNNA   87 (250)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEecc
Confidence            89998874

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.19  Score=43.35  Aligned_cols=76  Identities=21%  Similarity=0.243  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      .|+++|=.|++.|   .++..|++.|++|+.++.+++-++.+.+..   +++..+..|+.+...-   ..++.   ..+.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~d~~~v---~~~~~---~~g~   76 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEAT---ERALG---SVGP   76 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHH---HHHHT---TCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHH---HHHHH---HhCC
Confidence            6889999998876   455666777999999999988877766554   4678888898765322   22222   3367


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|-
T Consensus        77 iDilVnnA   84 (244)
T d1pr9a_          77 VDLLVNNA   84 (244)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEecc
Confidence            89999875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.54  E-value=0.25  Score=42.66  Aligned_cols=82  Identities=17%  Similarity=0.170  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+++|=-|++.|   .++..|++.|++|+.++.+++-++.+.+.+.  +++.++.+|..+..--..+.+....  ..+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~   80 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAVT--AFGG   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh--CcceEEEeecCCHHHHHHHHHHHHH--HhCC
Confidence            5788999998877   3556667779999999999988887776654  4788889998775432222211111  2256


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|++|.|..
T Consensus        81 idilinnAG   89 (244)
T d1nffa_          81 LHVLVNNAG   89 (244)
T ss_dssp             CCEEEECCC
T ss_pred             CeEEEECCc
Confidence            899998753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.24  Score=40.08  Aligned_cols=97  Identities=9%  Similarity=0.080  Sum_probs=58.9

Q ss_pred             HhcCCCCCEEEEEcCc--chHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhh
Q 016715          136 AAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       136 ~l~~~~~~~VLEIG~G--~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      ...++++++||=.|+|  .|.+...+++. |++|++++.+++-.+.+++.=    --.++.  ..+-++.+.+.+.    
T Consensus        23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lG----a~~vi~--~~~~d~~~~v~~~----   92 (179)
T d1qora2          23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG----AWQVIN--YREEDLVERLKEI----   92 (179)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT----CSEEEE--TTTSCHHHHHHHH----
T ss_pred             HhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcC----CeEEEE--CCCCCHHHHHHHH----
Confidence            3456789999999666  46677777776 899999999999988888652    123332  2222322211111    


Q ss_pred             ccCCCcceEeeccCccccHHHHHHhcccCC
Q 016715          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGD  242 (384)
Q Consensus       213 ~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~  242 (384)
                      -.+..+|+|+-...-......+..+.++|.
T Consensus        93 t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~  122 (179)
T d1qora2          93 TGGKKVRVVYDSVGRDTWERSLDCLQRRGL  122 (179)
T ss_dssp             TTTCCEEEEEECSCGGGHHHHHHTEEEEEE
T ss_pred             hCCCCeEEEEeCccHHHHHHHHHHHhcCCe
Confidence            123567887765544444455555555443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.37  E-value=0.23  Score=43.47  Aligned_cols=83  Identities=13%  Similarity=0.173  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      +|+++|=.|++.|   .++..|++.|++|+.++.+++-++.+.+.+...    .++..+.+|+.+...-+.+.+....  
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~--   81 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK--   81 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH--
Confidence            5788898898766   345566677999999999999888887776532    3688999999875433222221111  


Q ss_pred             cCCCcceEeecc
Q 016715          214 SSSGFAKVVANI  225 (384)
Q Consensus       214 ~~~~~d~Vv~Nl  225 (384)
                      ..+..|++|.|.
T Consensus        82 ~~g~iDilvnnA   93 (272)
T d1xkqa_          82 QFGKIDVLVNNA   93 (272)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCceEEEeCC
Confidence            225789999873

>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Topoisomerase VI-B subunit middle domain
domain: Topoisomerase VI-B subunit middle domain
species: Archaeon Sulfolobus shibatae [TaxId: 2286]

Probab=92.28  E-value=0.24  Score=34.83  Aligned_cols=49  Identities=16%  Similarity=0.212  Sum_probs=39.7

Q ss_pred             chHHHHHhhhc---ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHhC
Q 016715          336 KMLRKSLQHLC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV  384 (384)
Q Consensus       336 k~l~~~l~~~~---~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~~  384 (384)
                      .++..-++..+   +.....++|..+|++|.+++.+|+.+|+.+|++.+.++
T Consensus        24 ik~~l~lq~~f~GvGn~~a~Eil~~agi~P~~~~~~L~~~e~~~L~~air~~   75 (78)
T d2hkja1          24 YTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKY   75 (78)
T ss_dssp             CBHHHHHHHHSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHhcccCHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHHhhh
Confidence            45555566554   45556889999999999999999999999999998764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.26  E-value=0.22  Score=43.22  Aligned_cols=82  Identities=16%  Similarity=0.251  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+.+|=.|++.|   .++..|++.|++|+.+|.+++.++.+.+.+.  .+..++.+|..+...-+.+.+....  ..+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~--~~g~   80 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG--ERSMFVRHDVSSEADWTLVMAAVQR--RLGT   80 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--TTEEEECCCTTCHHHHHHHHHHHHH--HHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEeecCCHHHHHHHHHHHHH--HhCC
Confidence            5788998887766   3455566679999999999988887777663  4677888998775433322222221  2257


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|++|.|.-
T Consensus        81 iDilVnnAG   89 (253)
T d1hxha_          81 LNVLVNNAG   89 (253)
T ss_dssp             CCEEEECCC
T ss_pred             CCeEEeccc
Confidence            899998853

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.07  E-value=0.35  Score=41.93  Aligned_cols=83  Identities=18%  Similarity=0.207  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhh-HHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLS-LFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~-~~~~~~~~  215 (384)
                      +|+++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+.. ..++..+.+|..+...-+.+.+ ...  ...
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~--~~~   84 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN--HFH   84 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH--HTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH--HhC
Confidence            57899999987663   4556666799999999999888877766653 3478888999876543222221 111  112


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|.
T Consensus        85 ~~idilvnnA   94 (259)
T d2ae2a_          85 GKLNILVNNA   94 (259)
T ss_dssp             TCCCEEEECC
T ss_pred             CCceEEEECC
Confidence            4689999874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.00  E-value=0.2  Score=41.41  Aligned_cols=88  Identities=13%  Similarity=0.069  Sum_probs=56.5

Q ss_pred             HHHHHHHhcCC-CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715          130 NDQLAAAAAVQ-EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (384)
Q Consensus       130 ~~~il~~l~~~-~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~  205 (384)
                      +..+.+..... ++++||=.|++.|.   ++..+++.|++|+.++.+++-++.+.+.+....++.+...|..+.....  
T Consensus        10 v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--   87 (191)
T d1luaa1          10 VALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRA--   87 (191)
T ss_dssp             HHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHH--
T ss_pred             HHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHH--
Confidence            34455555433 78899999976542   3345566799999999999888877776654335556666665533211  


Q ss_pred             hhHHhhhccCCCcceEeeccC
Q 016715          206 LSLFERRKSSSGFAKVVANIP  226 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~Vv~NlP  226 (384)
                       .      ..+..|++|.|-+
T Consensus        88 -~------~~~~iDilin~Ag  101 (191)
T d1luaa1          88 -E------AVKGAHFVFTAGA  101 (191)
T ss_dssp             -H------HTTTCSEEEECCC
T ss_pred             -H------HhcCcCeeeecCc
Confidence             1      1256799998744

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=91.99  E-value=0.078  Score=46.22  Aligned_cols=42  Identities=17%  Similarity=0.154  Sum_probs=33.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeC
Q 016715          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEK  171 (384)
Q Consensus       130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~  171 (384)
                      +..|.+...+.++.+|+|+|||.|..+..++.+.  ..|.|+++
T Consensus        55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            3445555556778899999999999999999873  47788887

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.90  E-value=0.26  Score=42.65  Aligned_cols=82  Identities=12%  Similarity=0.150  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+++|=.|++.|   .++..|++.|++|+.++.+++-++.+.+.+.  +++..+.+|+.+...-..+.+....  ..+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--~~~~~~~~Dvt~~~~v~~~~~~~~~--~~g~   79 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG--PAACAIALDVTDQASIDRCVAELLD--RWGS   79 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEeeCCCHHHHHHHHHHHHH--HhCC
Confidence            4778898898766   3455666679999999999988877776663  4788899999775433222222211  2257


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|++|.|.-
T Consensus        80 iDilVnnAg   88 (256)
T d1k2wa_          80 IDILVNNAA   88 (256)
T ss_dssp             CCEEEECCC
T ss_pred             ccEEEeecc
Confidence            899998853

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.90  E-value=0.27  Score=42.65  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+++|=.|.+.|   .++..|++.|++|+.++.+++-++.+.+.+.  +++.++.+|+.+..--+.+.+....  ..+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~   79 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYARE--EFGS   79 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEcccCCHHHHHHHHHHHHH--HcCC
Confidence            5789999998877   4456667779999999999887776655542  4788999998875432222211111  2257


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|.
T Consensus        80 iDilVnnA   87 (254)
T d1hdca_          80 VDGLVNNA   87 (254)
T ss_dssp             CCEEEECC
T ss_pred             ccEEEecC
Confidence            89999874

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.38  Score=41.31  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+++|=-|++.|   .++..|++.|++|+.++.+++-++.+.+.+.  .+...+.+|..+...-+.+.+....  ..+.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~   78 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--ANGKGLMLNVTDPASIESVLEKIRA--EFGE   78 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHH--HTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC--CCCcEEEEEecCHHHhhhhhhhhhc--ccCC
Confidence            4778888887766   3445556679999999999998888777664  3677888898765432222221111  2367


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|.+|.|-
T Consensus        79 iDilVnnA   86 (243)
T d1q7ba_          79 VDILVNNA   86 (243)
T ss_dssp             CSEEEECC
T ss_pred             cceehhhh
Confidence            89999774

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.55  E-value=0.38  Score=41.72  Aligned_cols=86  Identities=12%  Similarity=0.092  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +|+++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+.. ..++..+.+|+.+...-....+.... ...+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS-MFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-HHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH-HhCC
Confidence            57899999988764   5556667799999999999888777666543 34788999998765432222211111 1125


Q ss_pred             CcceEeeccCc
Q 016715          217 GFAKVVANIPF  227 (384)
Q Consensus       217 ~~d~Vv~NlPy  227 (384)
                      ..|++|.|...
T Consensus        86 ~idilvnnAG~   96 (259)
T d1xq1a_          86 KLDILINNLGA   96 (259)
T ss_dssp             CCSEEEEECCC
T ss_pred             Ccccccccccc
Confidence            68999988543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.49  E-value=0.28  Score=42.92  Aligned_cols=83  Identities=12%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      +|+++|=-|++.|.   ++..|++.|++|+.++.+++-++.+.+.+...    .++..+.+|+.+...-+.+.+....  
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   80 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA--   80 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH--
Confidence            47888988987763   45566667999999999998888777665432    3688999998876533222211111  


Q ss_pred             cCCCcceEeecc
Q 016715          214 SSSGFAKVVANI  225 (384)
Q Consensus       214 ~~~~~d~Vv~Nl  225 (384)
                      ..+..|++|.|.
T Consensus        81 ~~G~iDilVnnA   92 (274)
T d1xhla_          81 KFGKIDILVNNA   92 (274)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCceEEEeec
Confidence            225789999873

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.43  E-value=0.48  Score=40.82  Aligned_cols=82  Identities=11%  Similarity=0.101  Sum_probs=54.4

Q ss_pred             CCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       142 ~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      |+.+|=-|++.|.   ++..|++.|++|+.++.+++-++.+.+.+... .++..+.+|+.+...-+.+.+....  ..+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~--~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVE--RYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH--HhCC
Confidence            4566777875543   33455566999999999998888777766543 4788999999876533322222211  2367


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|-
T Consensus        80 iDilVnnA   87 (257)
T d2rhca1          80 VDVLVNNA   87 (257)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEecc
Confidence            89999874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.30  E-value=0.12  Score=39.91  Aligned_cols=68  Identities=16%  Similarity=0.209  Sum_probs=43.4

Q ss_pred             EEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715          145 VLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (384)
Q Consensus       145 VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~  220 (384)
                      ++=+|+  |.++..+++    .|.+|+.+|.|++.++.++..     ...++.||+.+.+.-...        .....|.
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-----~~~~~~gd~~~~~~l~~a--------~i~~a~~   67 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-----ATHAVIANATEENELLSL--------GIRNFEY   67 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-----CSEEEECCTTCTTHHHHH--------TGGGCSE
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-----CCcceeeecccchhhhcc--------CCccccE
Confidence            344555  555555544    488999999999999887533     346788998775532210        1234677


Q ss_pred             EeeccCc
Q 016715          221 VVANIPF  227 (384)
Q Consensus       221 Vv~NlPy  227 (384)
                      ++..++-
T Consensus        68 vi~~~~~   74 (134)
T d2hmva1          68 VIVAIGA   74 (134)
T ss_dssp             EEECCCS
T ss_pred             EEEEcCc
Confidence            7766554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.28  E-value=0.46  Score=41.61  Aligned_cols=84  Identities=20%  Similarity=0.300  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      +|+++|=.|++.|   .++..|++.|++|+.++.+..-++.+.+.+..  ..++.++.+|..+..--..+.....  ...
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~--~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI--KVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhh--hhc
Confidence            5789999998776   45556666799999999998877665554431  2478888999887543222211111  123


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|++|.|.-
T Consensus       102 g~iDilvnnAg  112 (294)
T d1w6ua_         102 GHPNIVINNAA  112 (294)
T ss_dssp             CSCSEEEECCC
T ss_pred             cccchhhhhhh
Confidence            67888888753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.14  E-value=0.51  Score=40.84  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhc---CCCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~---~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      +|+.+|=-|++.|.   ++..|++.|++|+.+|.+++-++.+.+.+.   ...++..+.+|+.+...-+.+.+....  .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~--~   80 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE--R   80 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH--H
Confidence            46788888987663   456777779999999999988877666543   223788889998875432222221111  2


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|++|.|-
T Consensus        81 ~G~iDiLVnnA   91 (258)
T d1iy8a_          81 FGRIDGFFNNA   91 (258)
T ss_dssp             HSCCSEEEECC
T ss_pred             hCCCCEEEECC
Confidence            25789999873

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.07  E-value=0.15  Score=41.64  Aligned_cols=50  Identities=20%  Similarity=0.230  Sum_probs=40.8

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      +++...+++|++||=+|||. |.++..+++. |+ .|+++|.++.-.+.+++.
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            34456678999999999998 8888888876 66 799999999888888764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.90  E-value=0.21  Score=40.19  Aligned_cols=50  Identities=22%  Similarity=0.192  Sum_probs=40.0

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      .+...++++|++||=+|||. |.++..+++. |++++++|.++.-.+.+++.
T Consensus        22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc
Confidence            34566788999999999986 7777777775 88999999988877777654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.88  E-value=0.42  Score=40.93  Aligned_cols=76  Identities=17%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+..   +++..+..|..+.+.-   ...++   ..+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~~~~~v---~~~~~---~~g~   74 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDAT---EKALG---GIGP   74 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHH---HHHHT---TCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHH---HHHHH---HcCC
Confidence            57899988987662   34555667999999999988776665554   4688888888775422   22222   3367


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|-
T Consensus        75 iDilVnnA   82 (242)
T d1cyda_          75 VDLLVNNA   82 (242)
T ss_dssp             CSEEEECC
T ss_pred             CeEEEECC
Confidence            89999874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.57  E-value=0.54  Score=40.48  Aligned_cols=83  Identities=14%  Similarity=0.208  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhc-C-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA-S-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~-~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      +|+++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+. . ..++..+.+|+.+..--+.+.+....  ..
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE--KF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence            47889999987663   445666779999999999887766554442 1 24788889999875432222221111  22


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|-
T Consensus        82 g~iDiLVnnA   91 (251)
T d1vl8a_          82 GKLDTVVNAA   91 (251)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.46  E-value=0.56  Score=41.50  Aligned_cols=83  Identities=13%  Similarity=0.153  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCcchHH---HHHHHHcCCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhh
Q 016715          141 EGDIVLEIGPGTGSL---TNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       141 ~~~~VLEIG~G~G~l---t~~La~~~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      +|+.+|=.|++.|.=   +..|++.|++|+.++.+++-++.+.+.+..      ..++..+.+|+.+...-..+.+....
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   90 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   90 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence            688999999776532   234455699999999998877766554431      23788899999876533222221111


Q ss_pred             hccCCCcceEeecc
Q 016715          212 RKSSSGFAKVVANI  225 (384)
Q Consensus       212 ~~~~~~~d~Vv~Nl  225 (384)
                        ..+..|++|.|-
T Consensus        91 --~~G~iDiLVnnA  102 (297)
T d1yxma1          91 --TFGKINFLVNNG  102 (297)
T ss_dssp             --HHSCCCEEEECC
T ss_pred             --HhCCeEEEEeec
Confidence              225689999874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.39  E-value=0.36  Score=38.35  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=39.6

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      .+...+++++++||=+|+|+ |.++..+++. |++|++++.++.-++.+++.
T Consensus        19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            34556788999999999997 5555555655 78999999999998888764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.29  E-value=0.42  Score=41.32  Aligned_cols=83  Identities=17%  Similarity=0.212  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +|+++|=-|++.|.   ++..|++.|++|+.++.+++-++.+.+.+... +++..+.+|+.+...-+.+.+....  ..+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~--~~g   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS--KLG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence            57888888876543   22344556999999999998888777766543 4788999999875432222221111  225


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|.
T Consensus        88 ~iDilvnnA   96 (255)
T d1fmca_          88 KVDILVNNA   96 (255)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEeeeCC
Confidence            789999874

>d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Multi-domain proteins (alpha and beta)
fold: HI0933 insert domain-like
superfamily: HI0933 insert domain-like
family: HI0933 insert domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.18  E-value=0.41  Score=38.74  Aligned_cols=64  Identities=9%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             hHHHHH-HHHHHhcCCCchHHHHHhhhcChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          320 TKSFFS-MVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       320 ~~~~~~-~~~~~F~~rrk~l~~~l~~~~~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      .+.... +.+..-...++++.+.+..+.+..-+..+++.+|+++++...+|+.++..+|++.+++
T Consensus        88 ~~~l~~~l~~~~~~~~~~~~~~~l~~~lp~~l~~~ll~~~~i~~~~~~~~ls~~~~~~L~~~Lk~  152 (169)
T d2i0za2          88 SEQLFQRMLKQMKEDPKKGIKNVLKGYVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE  152 (169)
T ss_dssp             HHHHHHHHHHHHTTSTTSBHHHHTTTSSCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchhHhhhcccccchHHHHHHHHHcCCcccCCHHHCCHHHHHHHHHHHhC
Confidence            344444 4444456778899999999888888888999999999999999999999999988864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.69  E-value=0.62  Score=39.81  Aligned_cols=79  Identities=14%  Similarity=0.088  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +++++|=-|++.|.   ++..|++.|++|+.++.+++-++.+.+.+    +.+.+.+|+.+...-+.+.+....  ..+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~   77 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----GAHPVVMDVADPASVERGFAEALA--HLGR   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----TCEEEECCTTCHHHHHHHHHHHHH--HHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHH--hcCC
Confidence            47889988987663   23345556999999999998877766543    567888998775433222221111  2257


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|-
T Consensus        78 iDilVnnA   85 (242)
T d1ulsa_          78 LDGVVHYA   85 (242)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEECC
Confidence            89999873

>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Ribosomal protein S13
domain: Ribosomal protein S13
species: Escherichia coli [TaxId: 562]

Probab=89.69  E-value=0.26  Score=37.52  Aligned_cols=49  Identities=14%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             CCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       334 rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      ..|.+.-+|..++  +......++..+|+++++++.+||.+|...|.+.+.
T Consensus        10 ~~K~v~~ALt~I~GIG~~~A~~Ic~~lgid~~~kv~~Lt~~qi~~l~~~i~   60 (114)
T d2gy9m1          10 DHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVA   60 (114)
T ss_dssp             CSSBHHHHHTTSSSCCHHHHHHHHHHHTCCTTSBTTSCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEeeeeeCcCHHHHHHHHHHcCCCcccccCcccHHHHHHHHHHHH
Confidence            4578888888876  455557889999999999999999999999988765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.8  Score=39.29  Aligned_cols=85  Identities=15%  Similarity=0.161  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      .|+.+|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+...   .++..+.+|+.+...-+.+.+....  .
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~   79 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD--H   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH--H
Confidence            47788888976553   23344556999999999998888777665431   3788899999875432222211111  2


Q ss_pred             CCCcceEeeccCc
Q 016715          215 SSGFAKVVANIPF  227 (384)
Q Consensus       215 ~~~~d~Vv~NlPy  227 (384)
                      .+..|++|.|-..
T Consensus        80 ~G~iDilVnnAg~   92 (254)
T d2gdza1          80 FGRLDILVNNAGV   92 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCcCeecccccc
Confidence            2578999988544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.61  E-value=0.25  Score=40.22  Aligned_cols=50  Identities=20%  Similarity=0.153  Sum_probs=38.4

Q ss_pred             HHHHhcCCCCCEEEEEcCcch-HHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGTG-SLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G-~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      +++..++++|++||=+|||.. .++..+++. |+ +|+++|.++.-++.+++.
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            345567889999999999974 444455554 65 899999999999998864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.56  E-value=0.6  Score=34.09  Aligned_cols=53  Identities=15%  Similarity=0.210  Sum_probs=34.0

Q ss_pred             CCCEEEEEc---CcchHHHHHHHHcCCcEEEEeCCH-HHHHHHHHHhcCCCCeEEEEccccc
Q 016715          141 EGDIVLEIG---PGTGSLTNVLLNAGATVLAIEKDQ-HMVGLVRERFASIDQLKVLQEDFVK  198 (384)
Q Consensus       141 ~~~~VLEIG---~G~G~lt~~La~~~~~V~avE~d~-~~~~~a~~~~~~~~~v~~~~gD~~~  198 (384)
                      ..++|.=||   +|.+.++..|.++|.+|.|-|... ...+.+.+.     ++.+..++..+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~-----Gi~v~~g~~~~   63 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQA-----GAKIYIGHAEE   63 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHT-----TCEEEESCCGG
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHC-----CCeEEECCccc
Confidence            446777775   445566778888899999999853 333444332     56666655443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=89.54  E-value=0.5  Score=40.98  Aligned_cols=83  Identities=16%  Similarity=0.184  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCC-HHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d-~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      +|+.+|=.|++.|   .++..|++.|++|+.++.+ ++.++.+.+.+... .++..+.+|+.+...-+.+.+....  ..
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~--~~   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK--EF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--Hh
Confidence            5788898888776   3445666679999999987 44566555554432 4788889999875433222221111  22


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|.
T Consensus        84 G~iDiLVnnA   93 (261)
T d1geea_          84 GKLDVMINNA   93 (261)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEeeccc
Confidence            5789999884

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.52  E-value=0.52  Score=40.64  Aligned_cols=85  Identities=20%  Similarity=0.212  Sum_probs=56.5

Q ss_pred             CCCCEEEEEcCcch---HHHHHHHHcCCcEEEE-eCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          140 QEGDIVLEIGPGTG---SLTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       140 ~~~~~VLEIG~G~G---~lt~~La~~~~~V~av-E~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      -.|++||=.|.+.|   .++..|++.|++|+.. ..++..++.+.+.+... .++..+.+|+.+..--..+.+-...  .
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~--~   81 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS--H   81 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH--H
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH--H
Confidence            36889998887766   5666777779998864 67777777777766543 4888999998765432221111111  2


Q ss_pred             CCCcceEeeccC
Q 016715          215 SSGFAKVVANIP  226 (384)
Q Consensus       215 ~~~~d~Vv~NlP  226 (384)
                      .+..|++|.|..
T Consensus        82 ~g~idilinnag   93 (259)
T d1ja9a_          82 FGGLDFVMSNSG   93 (259)
T ss_dssp             HSCEEEEECCCC
T ss_pred             cCCCcEEEeccc
Confidence            256899998854

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.20  E-value=0.42  Score=38.57  Aligned_cols=50  Identities=18%  Similarity=0.264  Sum_probs=38.3

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      +++.++++++++||=+|||. |.++..+++. |+ .|+++|.++.-++.+++.
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            45556788999999999986 5555666654 66 567889999988888865

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.17  E-value=0.93  Score=38.88  Aligned_cols=80  Identities=16%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             EEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       144 ~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      .+|=-|++.|.   ++..|++.|++|+.++.+++-++.+.+.+... +++..+.+|+.+...-..+.+....  ..+..|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~--~~g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARK--TLGGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH--HTTCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH--HhCCcc
Confidence            34666766442   23455566999999999999888777766533 4788899999875533322222211  236789


Q ss_pred             eEeecc
Q 016715          220 KVVANI  225 (384)
Q Consensus       220 ~Vv~Nl  225 (384)
                      ++|.|-
T Consensus        81 ilVnnA   86 (255)
T d1gega_          81 VIVNNA   86 (255)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999874

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.00  E-value=0.35  Score=41.45  Aligned_cols=82  Identities=12%  Similarity=0.193  Sum_probs=52.8

Q ss_pred             CEEEEEcCcchHHHHHHH-------HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          143 DIVLEIGPGTGSLTNVLL-------NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La-------~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      ++||=-|++.| ++..++       +.|++|+.++.+++-++.+++.....+++.++.+|..+..--+.+.+.+......
T Consensus         3 KtilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   81 (248)
T d1snya_           3 NSILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD   81 (248)
T ss_dssp             SEEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred             CEEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence            46887787665 444333       2477999999998777766655444568999999998865433333222111123


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|-
T Consensus        82 ~~iDiLvnNA   91 (248)
T d1snya_          82 QGLNVLFNNA   91 (248)
T ss_dssp             GCCSEEEECC
T ss_pred             CCcceEEeec
Confidence            5689999873

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.95  E-value=0.69  Score=39.58  Aligned_cols=85  Identities=16%  Similarity=0.212  Sum_probs=57.2

Q ss_pred             CCCEEEEEcC----cchH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      +|+++|=.|+    |.|. ++..|++.|++|+..+.++...+.+.+.....++...+.+|..+..--+.+.+....  ..
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE--AF   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHH--hc
Confidence            5789999996    3554 556777789999999999887777666555445778889998875433222221111  22


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      +..|++|.|..+
T Consensus        85 g~iDilVnnag~   96 (256)
T d1ulua_          85 GGLDYLVHAIAF   96 (256)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            578998877543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.92  E-value=0.65  Score=40.23  Aligned_cols=84  Identities=15%  Similarity=0.139  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCC-HHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d-~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~  214 (384)
                      +|+++|=.|++.|.   ++..|++.|++|+.++.+ ++.++.+.+.+.. ..++..+.+|..+...-..+. .+.+   .
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~---~   93 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK---I   93 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHH---H
Confidence            57899999988773   566777779999999976 5666666555543 347888999987754322211 1221   2


Q ss_pred             CCCcceEeeccCc
Q 016715          215 SSGFAKVVANIPF  227 (384)
Q Consensus       215 ~~~~d~Vv~NlPy  227 (384)
                      .+..|++|.|...
T Consensus        94 ~g~idilV~nag~  106 (272)
T d1g0oa_          94 FGKLDIVCSNSGV  106 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCcccccccc
Confidence            2567888887543

>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Ribosomal protein S13
domain: Ribosomal protein S13
species: Thermus thermophilus [TaxId: 274]

Probab=88.79  E-value=0.33  Score=37.54  Aligned_cols=49  Identities=20%  Similarity=0.356  Sum_probs=41.3

Q ss_pred             CCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715          334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV  382 (384)
Q Consensus       334 rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~  382 (384)
                      ..|.+.-+|..++  +......++..+|+++++++.+||.+|+..|-+.++
T Consensus        10 ~~K~v~~ALt~I~GIG~~~A~~Ic~~lgId~~~k~~~Lt~~qi~~I~~~i~   60 (125)
T d2uubm1          10 RNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVE   60 (125)
T ss_dssp             CSSBHHHHHTTSTTCCHHHHHHHHHTTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeeeeeeCcCHHHHHHHHHHcCCCcccccccccHHHHHHHHHHHh
Confidence            3577888888876  455567889999999999999999999999988774

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.74  E-value=0.74  Score=36.62  Aligned_cols=77  Identities=17%  Similarity=0.184  Sum_probs=47.5

Q ss_pred             EEEEEcCcc--hHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          144 IVLEIGPGT--GSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       144 ~VLEIG~G~--G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      +|+=||||.  |.++..|.+.+.  +|+++|.++..++.+++.-    .+.....+.....              ....|
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~----~~~~~~~~~~~~~--------------~~~~d   64 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAKVE--------------DFSPD   64 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCGGGGG--------------GTCCS
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh----cchhhhhhhhhhh--------------ccccc
Confidence            577899985  445556666664  8999999999999988752    1111112221111              13468


Q ss_pred             eEeeccCccccHHHHHHhc
Q 016715          220 KVVANIPFNISTDVIKQLL  238 (384)
Q Consensus       220 ~Vv~NlPy~i~~~il~~L~  238 (384)
                      +|+...|-....+++..+.
T Consensus        65 lIila~p~~~~~~vl~~l~   83 (171)
T d2g5ca2          65 FVMLSSPVRTFREIAKKLS   83 (171)
T ss_dssp             EEEECSCHHHHHHHHHHHH
T ss_pred             cccccCCchhhhhhhhhhh
Confidence            8887777655555555444

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.69  E-value=0.67  Score=40.03  Aligned_cols=83  Identities=13%  Similarity=0.161  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccccccchhhhhhhHHhhhc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~~~~~~~~  213 (384)
                      +|+.+|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+.+...    .++..+.+|+.+...-+.+.+...  .
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~--~   81 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL--G   81 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH--H
Confidence            46788888876543   23455566999999999998888777765422    368999999877543322222111  1


Q ss_pred             cCCCcceEeecc
Q 016715          214 SSSGFAKVVANI  225 (384)
Q Consensus       214 ~~~~~d~Vv~Nl  225 (384)
                      ..+..|++|.|.
T Consensus        82 ~~g~iDilvnnA   93 (264)
T d1spxa_          82 KFGKLDILVNNA   93 (264)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCCCEeeccc
Confidence            236789999884

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=0.56  Score=40.74  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=54.3

Q ss_pred             CCEE-EEEcCcchH---HHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          142 GDIV-LEIGPGTGS---LTNVLLNA-GATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       142 ~~~V-LEIG~G~G~---lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      |++| |=-|++.|.   ++..|++. |++|+.++.+++-++.+.+.+.. .+++.++.+|..+..--..+.+....  ..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~--~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK--EY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHH--hc
Confidence            4555 455655443   23456665 78999999999888877776653 35889999999886543333332221  23


Q ss_pred             CCcceEeecc
Q 016715          216 SGFAKVVANI  225 (384)
Q Consensus       216 ~~~d~Vv~Nl  225 (384)
                      +..|++|.|-
T Consensus        80 g~iDiLVnNA   89 (275)
T d1wmaa1          80 GGLDVLVNNA   89 (275)
T ss_dssp             SSEEEEEECC
T ss_pred             CCcEEEEEcC
Confidence            5789999884

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.04  E-value=1.9  Score=34.12  Aligned_cols=50  Identities=16%  Similarity=0.284  Sum_probs=37.2

Q ss_pred             HHHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      +.+..++++|++||=+|||. |.++..+++. |+ .|+++|.++.-.+.+++.
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            34456788999999999884 4444555554 64 799999999888888865

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.73  E-value=1.5  Score=34.39  Aligned_cols=88  Identities=18%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             CCEEEEEcCcc-hHHH-HHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715          142 GDIVLEIGPGT-GSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (384)
Q Consensus       142 ~~~VLEIG~G~-G~lt-~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d  219 (384)
                      +++||=||+|- |..+ ..|++.|.+|+.+|.+..-++.+.+.+   +.......+.......+   ..      ....|
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~---~~~~~~~~~~~~~~~~~---~~------i~~~~   69 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV---QHSTPISLDVNDDAALD---AE------VAKHD   69 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC---TTEEEEECCTTCHHHHH---HH------HTTSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc---cccccccccccchhhhH---hh------hhccc
Confidence            46788899963 5444 344455889999999998777766543   34444433333221111   11      13567


Q ss_pred             eEeeccCccccHHHHHHhcccC
Q 016715          220 KVVANIPFNISTDVIKQLLPMG  241 (384)
Q Consensus       220 ~Vv~NlPy~i~~~il~~L~~~g  241 (384)
                      .+++..|+.........+...+
T Consensus        70 ~~i~~~~~~~~~~~~~~~~~~~   91 (182)
T d1e5qa1          70 LVISLIPYTFHATVIKSAIRQK   91 (182)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHT
T ss_pred             eeEeeccchhhhHHHHHHHhhc
Confidence            8888888876666655555444

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=87.60  E-value=1.1  Score=38.85  Aligned_cols=81  Identities=17%  Similarity=0.236  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+++|=-|++.|.   ++..|++.|++|+.++.+++-++.+.+.+.  +++..+.+|..+...-+.+.+....  ..+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~--~~g~   79 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG--DNVLGIVGDVRSLEDQKQAASRCVA--RFGK   79 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CCeeEEecccccHHHHHHHHHHHHH--HhCC
Confidence            47889988976553   234445569999999999988777666553  4788899998876433222211111  2257


Q ss_pred             cceEeecc
Q 016715          218 FAKVVANI  225 (384)
Q Consensus       218 ~d~Vv~Nl  225 (384)
                      .|++|.|.
T Consensus        80 idilvnnA   87 (276)
T d1bdba_          80 IDTLIPNA   87 (276)
T ss_dssp             CCEEECCC
T ss_pred             cccccccc
Confidence            88888763

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.29  E-value=0.36  Score=38.81  Aligned_cols=50  Identities=18%  Similarity=0.247  Sum_probs=37.6

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHHHH-HHHc-C-CcEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLTNV-LLNA-G-ATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt~~-La~~-~-~~V~avE~d~~~~~~a~~~  182 (384)
                      +.+..+++++++|+=+|+|.+.+... ++.. + .+|+++|.+++-++.+++.
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            34556788999999999998555544 3333 4 4899999999988888864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.26  E-value=0.42  Score=38.83  Aligned_cols=51  Identities=14%  Similarity=0.174  Sum_probs=39.0

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHH-HHHHHHc-C-CcEEEEeCCHHHHHHHHHHh
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSL-TNVLLNA-G-ATVLAIEKDQHMVGLVRERF  183 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~l-t~~La~~-~-~~V~avE~d~~~~~~a~~~~  183 (384)
                      +++..++++|++|+=+|||...+ +..+++. | .+|+++|.+++-++.|++.-
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence            34455678999999999997444 4444544 6 48999999999999998863

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.97  E-value=0.6  Score=40.28  Aligned_cols=84  Identities=19%  Similarity=0.205  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhc-C-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA-S-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~-~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      +|+++|=.|.+.|.   ++..|++.|++|+.++.+++-++.+.+.+. . ..++..+.+|+.+...-+.+.+....  ..
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA--DL   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH--Hh
Confidence            57889999976553   445566679999999998765554444332 1 24788899998876533222222211  23


Q ss_pred             CCcceEeeccC
Q 016715          216 SGFAKVVANIP  226 (384)
Q Consensus       216 ~~~d~Vv~NlP  226 (384)
                      +..|++|.|..
T Consensus        86 g~iDilVnnAg   96 (260)
T d1h5qa_          86 GPISGLIANAG   96 (260)
T ss_dssp             CSEEEEEECCC
T ss_pred             CCCcEeccccc
Confidence            67899998854

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.97  E-value=0.66  Score=37.32  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             HHhcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhh
Q 016715          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (384)
Q Consensus       135 ~~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~  211 (384)
                      +...+++|++||=.|.  |.|.++..+++. |++|+++..+++-.+.+++.    +--.++..  .+-++.+...+.   
T Consensus        19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~~vi~~--~~~~~~~~v~~~---   89 (183)
T d1pqwa_          19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVEYVGDS--RSVDFADEILEL---   89 (183)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCSEEEET--TCSTHHHHHHHH---
T ss_pred             HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----cccccccC--CccCHHHHHHHH---
Confidence            4446778999998873  457777777776 89999998888777777753    21223322  222222211111   


Q ss_pred             hccCCCcceEeeccCccccHHHHHHhcccC
Q 016715          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (384)
Q Consensus       212 ~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g  241 (384)
                       -.+..+|+|+....-......+..+.++|
T Consensus        90 -t~~~g~d~v~d~~g~~~~~~~~~~l~~~G  118 (183)
T d1pqwa_          90 -TDGYGVDVVLNSLAGEAIQRGVQILAPGG  118 (183)
T ss_dssp             -TTTCCEEEEEECCCTHHHHHHHHTEEEEE
T ss_pred             -hCCCCEEEEEecccchHHHHHHHHhcCCC
Confidence             12356888887554333344455544444

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.95  E-value=0.98  Score=38.67  Aligned_cols=77  Identities=17%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~  216 (384)
                      +|+++|=-|++.|.   ++..|++.|++|+.++.+++..+.+++.     +..++.+|+.+...-+.+. ...+   ..+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~---~~G   75 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI-----GGAFFQVDLEDERERVRFVEEAAY---ALG   75 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH-----TCEEEECCTTCHHHHHHHHHHHHH---HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHHH---hcC
Confidence            57899988876552   3345556699999999998876655432     4567888887754322222 2222   226


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        76 ~iDiLVnnA   84 (248)
T d2d1ya1          76 RVDVLVNNA   84 (248)
T ss_dssp             CCCEEEECC
T ss_pred             CCCeEEEeC
Confidence            789999874

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.92  E-value=0.78  Score=39.08  Aligned_cols=84  Identities=23%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCcc--h---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh-hhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGT--G---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~--G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~  214 (384)
                      +|++||=.|+++  |   .++..|++.|++|+..+.++...+.+.+.....++......|..+..... .+....   ..
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   80 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG---KV   80 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH---TT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhh---hc
Confidence            578999998754  4   36678888899999999998877777666554456666677765533211 111111   23


Q ss_pred             CCCcceEeeccCc
Q 016715          215 SSGFAKVVANIPF  227 (384)
Q Consensus       215 ~~~~d~Vv~NlPy  227 (384)
                      .+..|.+|.|..+
T Consensus        81 ~~~~d~~v~~a~~   93 (258)
T d1qsga_          81 WPKFDGFVHSIGF   93 (258)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             ccccceEEEeecc
Confidence            4667888877544

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=86.87  E-value=0.87  Score=39.14  Aligned_cols=83  Identities=17%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCC-HHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d-~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~  214 (384)
                      +|+.+|=.|++.|.   ++..|++.|++|+.++.+ +..++.+.+.+..  ..++.++.+|+.+...-+.+.+....  .
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~--~   80 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR--Q   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH--H
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH--H
Confidence            57788887887664   445666779999999985 5666666554422  24788899999875533222221111  2


Q ss_pred             CCCcceEeecc
Q 016715          215 SSGFAKVVANI  225 (384)
Q Consensus       215 ~~~~d~Vv~Nl  225 (384)
                      .+..|++|.|-
T Consensus        81 ~G~iDiLVnnA   91 (260)
T d1x1ta1          81 MGRIDILVNNA   91 (260)
T ss_dssp             HSCCSEEEECC
T ss_pred             hCCCcEEEeec
Confidence            25789999884

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=86.62  E-value=0.49  Score=43.83  Aligned_cols=47  Identities=15%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             CCCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcC
Q 016715          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFAS  185 (384)
Q Consensus       139 ~~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~  185 (384)
                      +.+++.++|||+=.|..+..++..    +.+|+++|.++...+.+++++..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            457789999999999988777653    35899999999999999988753

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.53  E-value=0.79  Score=37.05  Aligned_cols=49  Identities=16%  Similarity=0.315  Sum_probs=37.9

Q ss_pred             HHHhcCCCCCEEEEEcCcc--hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715          134 AAAAAVQEGDIVLEIGPGT--GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       134 l~~l~~~~~~~VLEIG~G~--G~lt~~La~~-~~~V~avE~d~~~~~~a~~~  182 (384)
                      .+..++++|++||=.|+|.  |..+..+++. |++|+++..+++-.+.+++.
T Consensus        22 ~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~   73 (182)
T d1v3va2          22 LEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI   73 (182)
T ss_dssp             HTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh
Confidence            3455678999999888754  5566666665 88999999998888877765

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=86.50  E-value=1.4  Score=37.41  Aligned_cols=82  Identities=11%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~  217 (384)
                      +|+.+|=.|++.|.   ++..|++.|++|+.++.+.+-++.+.+.+.  +++..+++|+.+.+--+.+.+-..+  ..+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dls~~~~i~~~~~~i~~--~~g~   79 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEALE--EFGR   79 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHHH--HHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CceEEEEecCCCHHHHHHHHHHHHH--HhCC
Confidence            57889988988653   334455569999999999987766655442  4788899998775432222211111  2257


Q ss_pred             cceEeeccC
Q 016715          218 FAKVVANIP  226 (384)
Q Consensus       218 ~d~Vv~NlP  226 (384)
                      .|++|.|..
T Consensus        80 iDiLinnAg   88 (241)
T d2a4ka1          80 LHGVAHFAG   88 (241)
T ss_dssp             CCEEEEGGG
T ss_pred             ccEeccccc
Confidence            899998743

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=86.38  E-value=0.84  Score=39.02  Aligned_cols=81  Identities=9%  Similarity=0.015  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHH-HHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQH-MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~-~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      +|+.+|=.|.+.|   .++..|++.|++|+.+|.++. ..+...+.  ...++..+.+|+.+...-+.+.+....  ..+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~--~g~~~~~~~~Dvs~~~~v~~~~~~~~~--~~G   79 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN--LGRRVLTVKCDVSQPGDVEAFGKQVIS--TFG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHH--cCCcEEEEEeeCCCHHHHHHHHHHHHH--HcC
Confidence            4788888887765   344566667999999998753 22222122  124788999999875433322222211  226


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        80 ~iDilVnnA   88 (247)
T d2ew8a1          80 RCDILVNNA   88 (247)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999884

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=86.21  E-value=0.84  Score=35.75  Aligned_cols=73  Identities=15%  Similarity=0.041  Sum_probs=43.6

Q ss_pred             CEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715          143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (384)
Q Consensus       143 ~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~  218 (384)
                      ++|+=+|+  |..+..+++    .+.+|+.||.|++......+.... .++.++.||+.+...-..        ......
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~-~~~~vi~Gd~~d~~~L~~--------a~i~~a   72 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSVLKK--------AGIDRC   72 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHHHHH--------HTTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc-CCcEEEEccCcchHHHHH--------hccccC
Confidence            35666666  555555544    488999999998654433333221 478999999987543110        122456


Q ss_pred             ceEeeccC
Q 016715          219 AKVVANIP  226 (384)
Q Consensus       219 d~Vv~NlP  226 (384)
                      +.||.-.+
T Consensus        73 ~~vi~~~~   80 (153)
T d1id1a_          73 RAILALSD   80 (153)
T ss_dssp             SEEEECSS
T ss_pred             CEEEEccc
Confidence            67776544

>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.83  E-value=0.56  Score=34.20  Aligned_cols=56  Identities=13%  Similarity=0.237  Sum_probs=42.3

Q ss_pred             HHHhcCCCchHHHHHh--hhc---ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          328 SSAFNGKRKMLRKSLQ--HLC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       328 ~~~F~~rrk~l~~~l~--~~~---~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      ...+..+++.|+..|.  +.+   +.-...++|=.++|+|...+.+|+.+|+.+|+..+.+
T Consensus        15 ~~~l~~~~~~ik~~LlDQ~~~aGiGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~~~~   75 (94)
T d1r2za1          15 AERAVKTKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA   75 (94)
T ss_dssp             HHHHTTCCSBHHHHHHCTTTSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCccHHHHHHhccccCCcccHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHH
Confidence            3445678889998873  222   2233478888999999999999999999999987653

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=85.67  E-value=0.48  Score=41.48  Aligned_cols=80  Identities=10%  Similarity=-0.026  Sum_probs=64.0

Q ss_pred             EEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeecc
Q 016715          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (384)
Q Consensus       146 LEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl  225 (384)
                      +.+-||+-.++..+++...+++.+|+.+.-.+.+++++....++++.+.|+.+.-....    +    ..+.--+|+.++
T Consensus        87 l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~~~~~~v~~~DG~~~l~all----P----P~~rRgLVLIDP  158 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALL----P----PPEKRGLIFIDP  158 (271)
T ss_dssp             CCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHC----S----CTTSCEEEEECC
T ss_pred             cCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhccCCCceEEcCchHHHHHhhC----C----CCCCceEEEecC
Confidence            46899999999999988889999999999999999988776799999999987532210    0    113345788999


Q ss_pred             CccccHHH
Q 016715          226 PFNISTDV  233 (384)
Q Consensus       226 Py~i~~~i  233 (384)
                      ||...++.
T Consensus       159 pYE~k~ey  166 (271)
T d2oo3a1         159 SYERKEEY  166 (271)
T ss_dssp             CCCSTTHH
T ss_pred             CcCCHHHH
Confidence            99887655

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.61  E-value=0.95  Score=38.87  Aligned_cols=85  Identities=18%  Similarity=0.166  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC----cchHH-HHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGP----GTGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~----G~G~l-t~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      +|+++|=.|+    |.|.- +..|++.|++|+.++.++...+.+++.........+...|...........+...  ...
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~   81 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVK--KDL   81 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHH--HHc
Confidence            5789999985    34543 4556666999999999977666655544433456667777765433222221111  123


Q ss_pred             CCcceEeeccCc
Q 016715          216 SGFAKVVANIPF  227 (384)
Q Consensus       216 ~~~d~Vv~NlPy  227 (384)
                      +..|.+|.|..+
T Consensus        82 g~id~lV~nag~   93 (274)
T d2pd4a1          82 GSLDFIVHSVAF   93 (274)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCeEEeeccc
Confidence            678888887654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.39  E-value=0.4  Score=36.66  Aligned_cols=46  Identities=17%  Similarity=0.188  Sum_probs=37.3

Q ss_pred             CcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715          150 PGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (384)
Q Consensus       150 ~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~  200 (384)
                      ||.|..+..+++.  +.+++.+|.|+...+.++..     ++.++.||+.+..
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-----~~~~i~Gd~~~~~   53 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-----GANFVHGDPTRVS   53 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-----TCEEEESCTTSHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-----CccccccccCCHH
Confidence            6778899988885  66899999999988877543     6889999988743

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=1.6  Score=37.53  Aligned_cols=82  Identities=13%  Similarity=0.231  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (384)
Q Consensus       141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~  215 (384)
                      +|+++|=.|++.|.   ++..|++.|++|+.++.+++-++.+.+...  ....+.....|..+........+....  ..
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~   90 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK--LM   90 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHH--Hh
Confidence            57899999998773   345556669999999999998887766543  223567777777665433322222211  12


Q ss_pred             CCcceEeec
Q 016715          216 SGFAKVVAN  224 (384)
Q Consensus       216 ~~~d~Vv~N  224 (384)
                      +..|.++.|
T Consensus        91 g~~~~li~n   99 (269)
T d1xu9a_          91 GGLDMLILN   99 (269)
T ss_dssp             TSCSEEEEC
T ss_pred             CCccccccc
Confidence            456777665

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.74  E-value=0.82  Score=38.96  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             CCEEEEEcCcch---HHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715          142 GDIVLEIGPGTG---SLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       142 ~~~VLEIG~G~G---~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      .++||=-|++.|   .++..|++.|+  +|+++..+.+-++.+++.  ...++.++.+|..+..--+.+.+.........
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~--~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   80 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI--KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC--CCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh--hCCceEEEEEecCCHHHHHHHHHHHHHHhCCC
Confidence            368888888776   44556666675  688888887666655432  22489999999987654333332222111223


Q ss_pred             CcceEeecc
Q 016715          217 GFAKVVANI  225 (384)
Q Consensus       217 ~~d~Vv~Nl  225 (384)
                      ..|++|.|-
T Consensus        81 ~idilinnA   89 (250)
T d1yo6a1          81 GLSLLINNA   89 (250)
T ss_dssp             CCCEEEECC
T ss_pred             CeEEEEEcC
Confidence            578999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.72  E-value=0.68  Score=37.17  Aligned_cols=50  Identities=20%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             HHHHhcCCCCCEEEEEcCcchHHH-HHHHHc-C-CcEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGPGTGSLT-NVLLNA-G-ATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~G~G~lt-~~La~~-~-~~V~avE~d~~~~~~a~~~  182 (384)
                      +++..++++|++||=+|+|.+.+. ..+++. + .+|+++|.++.-.+.+++.
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            345567889999999999765444 344443 4 5999999999998888776

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=83.31  E-value=2.7  Score=35.47  Aligned_cols=80  Identities=11%  Similarity=0.102  Sum_probs=52.8

Q ss_pred             EEEEEcCcchH---HHHHHHHcCCc-------EEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhh
Q 016715          144 IVLEIGPGTGS---LTNVLLNAGAT-------VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR  212 (384)
Q Consensus       144 ~VLEIG~G~G~---lt~~La~~~~~-------V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~  212 (384)
                      .||=-|++.|.   ++..|++.|++       |+.++.+++-++.+.+.+... .++..+.+|..+...-+.+.+.... 
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~-   81 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE-   81 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH-
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH-
Confidence            35666877663   33455666887       999999999888877766543 4788889998876533322222211 


Q ss_pred             ccCCCcceEeecc
Q 016715          213 KSSSGFAKVVANI  225 (384)
Q Consensus       213 ~~~~~~d~Vv~Nl  225 (384)
                       ..+..|++|.|-
T Consensus        82 -~~g~iDilvnnA   93 (240)
T d2bd0a1          82 -RYGHIDCLVNNA   93 (240)
T ss_dssp             -HTSCCSEEEECC
T ss_pred             -HcCCcceeeccc
Confidence             236789999874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.27  E-value=0.88  Score=32.70  Aligned_cols=41  Identities=12%  Similarity=0.240  Sum_probs=26.3

Q ss_pred             cCcchHHHHHHHHcCCcEEEEeCCH-HHHHHHHHHhcCCCCeEEEEc
Q 016715          149 GPGTGSLTNVLLNAGATVLAIEKDQ-HMVGLVRERFASIDQLKVLQE  194 (384)
Q Consensus       149 G~G~G~lt~~La~~~~~V~avE~d~-~~~~~a~~~~~~~~~v~~~~g  194 (384)
                      |+|...++..|.++|..|.|-|..+ ...+.+++.     ++++..+
T Consensus        11 G~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~-----Gi~i~~g   52 (89)
T d1j6ua1          11 GIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKL-----GIPIFVP   52 (89)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHT-----TCCEESS
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHC-----CCeEEee
Confidence            3445566777788899999999876 334443332     4556544

>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Lactococcus lactis [TaxId: 1358]

Probab=83.17  E-value=1.5  Score=31.41  Aligned_cols=53  Identities=15%  Similarity=0.236  Sum_probs=41.3

Q ss_pred             hcCCCchHHHHHhh--hc---ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          331 FNGKRKMLRKSLQH--LC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       331 F~~rrk~l~~~l~~--~~---~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      +..+++.++..|-.  .+   +.-...++|=.++|+|..++.+|+.+|+.+|+..+.+
T Consensus        18 l~~~~~~ik~~LldQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~   75 (88)
T d1tdza1          18 LRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE   75 (88)
T ss_dssp             HHHCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred             HHcccccHHHHHHhccccCCcChHHHHHHHHHHHcCccchhhHcCHHHHHHHHHHHHH
Confidence            45678899988842  22   2333478888999999999999999999999987654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.00  E-value=1.7  Score=34.28  Aligned_cols=50  Identities=18%  Similarity=0.369  Sum_probs=39.2

Q ss_pred             HHHHhcCCCCCEEEEEcC-c-chHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHH
Q 016715          133 LAAAAAVQEGDIVLEIGP-G-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       133 il~~l~~~~~~~VLEIG~-G-~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~  182 (384)
                      .+...+++++++||=+|| | .|.++..+++. + .+|+++|.++.-.+.+++.
T Consensus        19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            456677889999999997 4 56666666654 6 5999999999988888865

>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Escherichia coli [TaxId: 562]

Probab=82.75  E-value=1.5  Score=31.28  Aligned_cols=54  Identities=17%  Similarity=0.207  Sum_probs=41.4

Q ss_pred             HhcCCCchHHHHHhh--hc---ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          330 AFNGKRKMLRKSLQH--LC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       330 ~F~~rrk~l~~~l~~--~~---~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      .+.++++.++..|..  .+   +.-...++|=.++++|..++.+|+.+|+.+|++.+.+
T Consensus        17 ~l~~~~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~L~~~~~~~L~~~i~~   75 (88)
T d1k82a1          17 KCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA   75 (88)
T ss_dssp             HHTTCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHccccccccchHHHHHHHHHHCCCccChHHHCCHHHHHHHHHHHHH
Confidence            445778888888742  22   2233468888999999999999999999999987654

>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Thermus thermophilus [TaxId: 274]

Probab=82.55  E-value=1.9  Score=30.76  Aligned_cols=54  Identities=17%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             HhcCCCchHHHHHhh--hc---ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715          330 AFNGKRKMLRKSLQH--LC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ  383 (384)
Q Consensus       330 ~F~~rrk~l~~~l~~--~~---~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~  383 (384)
                      .+.++++.++..|..  .+   +.-...++|=.++|+|..++.+|+.+|+.+|+..+.+
T Consensus        17 ~l~~~~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~i~~   75 (89)
T d1ee8a1          17 GLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE   75 (89)
T ss_dssp             HHHTCCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHhccccCCCCcHHHHHHHHHHHcCccchhhhCCHHHHHHHHHHHHH
Confidence            345678888888742  22   2333478888999999999999999999999987654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.83  E-value=0.8  Score=37.24  Aligned_cols=101  Identities=22%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             HHHHHHhcCCCCCEEEEEcCc--chHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715          131 DQLAAAAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (384)
Q Consensus       131 ~~il~~l~~~~~~~VLEIG~G--~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~  207 (384)
                      ..+.+.....++++||=-|++  -|.+...+++. |++|+++--+++-.+.+++.-.  +  .++..+-..   .+    
T Consensus        21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa--~--~vi~~~~~~---~~----   89 (176)
T d1xa0a2          21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA--K--EVLAREDVM---AE----   89 (176)
T ss_dssp             HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC--S--EEEECC------------
T ss_pred             HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccc--c--eeeecchhH---HH----
Confidence            334444556678899999864  45666666765 8999999998888888876421  1  222211100   00    


Q ss_pred             HHhhhccCCCcceEeeccCccccHHHHHHhcccCCC
Q 016715          208 LFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI  243 (384)
Q Consensus       208 ~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~  243 (384)
                      .... ...+.+|+|+-+..-......+..|.++|++
T Consensus        90 ~~~~-~~~~gvD~vid~vgg~~~~~~l~~l~~~Gri  124 (176)
T d1xa0a2          90 RIRP-LDKQRWAAAVDPVGGRTLATVLSRMRYGGAV  124 (176)
T ss_dssp             -----CCSCCEEEEEECSTTTTHHHHHHTEEEEEEE
T ss_pred             HHHH-hhccCcCEEEEcCCchhHHHHHHHhCCCceE
Confidence            0000 1235789998877666677778888877755

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.03  E-value=1.6  Score=34.78  Aligned_cols=44  Identities=25%  Similarity=0.394  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715          139 VQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (384)
Q Consensus       139 ~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~  182 (384)
                      .++++.||=+|+|. |.++..+++. |+ .|+++|.+++-++.+++.
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            56899999999987 5555566654 65 789999999888888764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=80.03  E-value=6.3  Score=30.77  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=51.2

Q ss_pred             CEEEEEcCcc--hHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEc-cccccchhhhhhhHHhhhccCC
Q 016715          143 DIVLEIGPGT--GSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQE-DFVKCHIRSHMLSLFERRKSSS  216 (384)
Q Consensus       143 ~~VLEIG~G~--G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~g-D~~~~~~~~~~~~~~~~~~~~~  216 (384)
                      ++|-=||+|.  +.++..|++.|.+|+.+|.++.-++.+++.-..   .+..+.... +....+..+          ...
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----------~~~   71 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL----------AVK   71 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH----------HHT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh----------Hhc
Confidence            4677788886  334455666799999999999888887764210   111111111 111111111          014


Q ss_pred             CcceEeeccCccccHHHHHHhccc
Q 016715          217 GFAKVVANIPFNISTDVIKQLLPM  240 (384)
Q Consensus       217 ~~d~Vv~NlPy~i~~~il~~L~~~  240 (384)
                      ..|+|+.-.|-.....++..+.+.
T Consensus        72 ~aD~iii~v~~~~~~~~~~~i~~~   95 (184)
T d1bg6a2          72 DADVILIVVPAIHHASIAANIASY   95 (184)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHGGG
T ss_pred             CCCEEEEEEchhHHHHHHHHhhhc
Confidence            578888777776677777777653