Citrus Sinensis ID: 016716

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
MAMASSYLQCNHQHQLHLPSIRPNGFSFFKPKTNFRRTQLIKCTRKQVEVVYDPDERRNKLADEVDREAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTNACSEPPAFSETVG
ccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcEEcccccEEEEEEccccccEEEEccccccccccccHHHHHHHHHHHHccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccEEEEEEcccccccccccccccccEEEEcccccccHHHHHccccccccccccHHHHHHHHHHccccccccccccHHHHHHHcHHHHHHHHHHHHcccccccccccccccccEEEEccccccccccccccccccEEEEEEEEEcccccEEEEcccccccccccccccccc
cccHccHHccccccccccccccccccccccccccEEEHHHHHccccEEEEEEcHHHHHHHHHHHHHccccccEEEEccccEEEEEEEEcccccccccHHHHHHEEEccccEEEEEEcccccEEEEEccccccccHHHcHHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHccEEcccccEEEEccEEEEEcccEEEEccccccccccEEEEEccccccccHHHHccccccccccccHHHHHHHHHcccccHHccccccHHHHHHHcHHHHHHHHHHHHHcccccccEEEcccccEEEEEEcccHHHHHHccccHccEEEEEHHHcccccccHccccccccccccccccccccc
mamassylqcnhqhqlhlpsirpngfsffkpktnfrrtqlikctrkqvevvydpderrnkladevdreaplsrltlfspckiNAFLRITNKREDGFHDLASLFHVISLgdtikfslsplksrdrlstnvpgipvddsnLIIKALNLYRkktesdnffwihldkkvpsgaglgggssNAATALWAANQFNGCVATEKELQEWsseigsdipfffshgaayctgrgevvqdipppipldvpmvlikpreacptaevykhlrldqttkvdpltLLEQISrnglsqdvcindleapafqvlpsLKRLKQRIIAAGrgqydavfmsgsgstivgigspdppqfiyddneyeDVFLSEARFITREVNQWYResastnacseppafsetvg
MAMASSYLQCNHQHQLHLPSIRPNGFSFFKPKTNfrrtqlikctrkqvevvydpderrnkladevdreaplsrltlfspckINAFLRITNKREDGFHDLASLFHVISLGDTIKFslsplksrdrlstnvpgipvddsnlIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYkhlrldqttkvdPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYREsastnacseppafsetvg
MAMASSYLQCNHQHQLHLPSIRPNGFSFFKPKTNFRRTQLIKCTRKQVEVVYDPDERRNKLADEVDREAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPsgaglgggssnaaTALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMsgsgstivgigsPDPPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTNACSEPPAFSETVG
********QCNHQHQLHLPSIRPNGFSFFKPKTNFRRTQLIKCTRKQVEVVYD****************PLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKS*DRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYR*******************
*************************************************VVYD********************LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTN*************
MAMASSYLQCNHQHQLHLPSIRPNGFSFFKPKTNFRRTQLIKCTRKQVEVVYDPDERRNKLADEVDREAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYR*******************
*************************FSFFKPKTNFRRTQLIKCTRKQVEVVYDPDERRNKLADEVDREAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWY********************
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MAMASSYLQCNHQHQLHLPSIRPNGFSFFKPKTNFRRTQLIKCTRKQVEVVYDPDERRNKLADEVDREAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTNACSEPPAFSETVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query384 2.2.26 [Sep-21-2011]
P93841401 4-diphosphocytidyl-2-C-me N/A no 0.945 0.905 0.751 1e-168
P56848405 4-diphosphocytidyl-2-C-me N/A no 0.929 0.881 0.730 1e-160
O81014383 4-diphosphocytidyl-2-C-me yes no 0.869 0.872 0.805 1e-158
Q8S2G0401 4-diphosphocytidyl-2-C-me yes no 0.929 0.890 0.717 1e-153
Q6MAT6288 4-diphosphocytidyl-2-C-me yes no 0.695 0.927 0.450 2e-61
A7GJV7289 4-diphosphocytidyl-2-C-me yes no 0.664 0.882 0.350 4e-32
B4EAR4293 4-diphosphocytidyl-2-C-me yes no 0.617 0.808 0.338 7e-31
A4JHZ4293 4-diphosphocytidyl-2-C-me yes no 0.505 0.662 0.373 1e-30
Q39CU1293 4-diphosphocytidyl-2-C-me yes no 0.622 0.815 0.341 1e-30
Q0BBQ6293 4-diphosphocytidyl-2-C-me yes no 0.617 0.808 0.342 2e-30
>sp|P93841|ISPE_SOLLC 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment) OS=Solanum lycopersicum GN=ISPE PE=1 SV=1 Back     alignment and function desciption
 Score =  590 bits (1521), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 278/370 (75%), Positives = 319/370 (86%), Gaps = 7/370 (1%)

Query: 20  SIRPNGFSFFKPKTNFRRTQLI-------KCTRKQVEVVYDPDERRNKLADEVDREAPLS 72
           S RP+G S+F     FRR   +       + ++KQVE+ Y+P+E+ NKLADEVDREA LS
Sbjct: 28  SNRPHGSSYFNKNIQFRRNSFVIVKASGSRTSKKQVEITYNPEEKFNKLADEVDREAGLS 87

Query: 73  RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGI 132
           RLTLFSPCKIN FLRIT+KR+DG+HDLASLFHVISLGD IKFSLSP KS+DRLSTNV G+
Sbjct: 88  RLTLFSPCKINVFLRITSKRDDGYHDLASLFHVISLGDKIKFSLSPSKSKDRLSTNVAGV 147

Query: 133 PVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCV 192
           P+D+ NLIIKALNLYRKKT +DN+FWIHLDKKVP+GAGLGGGSSNAAT LWAANQF+GCV
Sbjct: 148 PLDERNLIIKALNLYRKKTGTDNYFWIHLDKKVPTGAGLGGGSSNAATTLWAANQFSGCV 207

Query: 193 ATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTA 252
           ATEKELQEWS EIGSDIPFFFSHGAAYCTGRGEVVQDIP PIP D+PMVLIKP++AC TA
Sbjct: 208 ATEKELQEWSGEIGSDIPFFFSHGAAYCTGRGEVVQDIPSPIPFDIPMVLIKPQQACSTA 267

Query: 253 EVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGR 312
           EVYK  +LD ++KVDPL+LLE+IS +G+SQDVC+NDLE PAF+VLPSLKRLKQR+IAAGR
Sbjct: 268 EVYKRFQLDLSSKVDPLSLLEKISTSGISQDVCVNDLEPPAFEVLPSLKRLKQRVIAAGR 327

Query: 313 GQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTNA 372
           GQYDAVFMSGSGSTIVG+GSPDPPQF+YDD EY+DVFLSEA FITR  N+WY E  S + 
Sbjct: 328 GQYDAVFMSGSGSTIVGVGSPDPPQFVYDDEEYKDVFLSEASFITRPANEWYVEPVSGST 387

Query: 373 CSEPPAFSET 382
             + P FS +
Sbjct: 388 IGDQPEFSTS 397
Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
Solanum lycopersicum (taxid: 4081)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 4EC: 8
>sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Mentha piperita GN=ISPE PE=1 SV=1 Back     alignment and function description
>sp|O81014|ISPE_ARATH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Arabidopsis thaliana GN=ISPE PE=2 SV=1 Back     alignment and function description
>sp|Q8S2G0|ISPE_ORYSJ 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPE PE=2 SV=1 Back     alignment and function description
>sp|Q6MAT6|ISPE_PARUW 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Protochlamydia amoebophila (strain UWE25) GN=ispE PE=3 SV=1 Back     alignment and function description
>sp|A7GJV7|ISPE_BACCN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ispE PE=3 SV=1 Back     alignment and function description
>sp|B4EAR4|ISPE_BURCJ 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=ispE PE=3 SV=1 Back     alignment and function description
>sp|A4JHZ4|ISPE_BURVG 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ispE PE=3 SV=1 Back     alignment and function description
>sp|Q39CU1|ISPE_BURS3 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Burkholderia sp. (strain 383) GN=ispE PE=3 SV=1 Back     alignment and function description
>sp|Q0BBQ6|ISPE_BURCM 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ispE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
359479151394 PREDICTED: 4-diphosphocytidyl-2-C-methyl 0.981 0.956 0.768 1e-175
164604994388 4-(cytidine 5'-diphospho)-2-C-methyl-D-e 0.981 0.971 0.746 1e-171
388516267392 unknown [Lotus japonicus] 0.979 0.959 0.753 1e-169
255564440388 4-diphosphocytidyl-2-C-methyl-d-erythrit 0.966 0.956 0.767 1e-169
363814504395 uncharacterized protein LOC100812541 [Gl 0.947 0.921 0.755 1e-167
7227898401 RecName: Full=4-diphosphocytidyl-2-C-met 0.945 0.905 0.751 1e-166
145843639396 4-diphosphocytidyl-2-C-methyl-D-erythrit 0.966 0.936 0.727 1e-165
356549904396 PREDICTED: 4-diphosphocytidyl-2-C-methyl 0.947 0.919 0.75 1e-164
189017044343 putative chloroplast 4-(cytidine 5'-diph 0.888 0.994 0.795 1e-162
113473647408 4-diphosphocytidyl-2-C-methyl-D-erythrit 0.916 0.862 0.75 1e-161
>gi|359479151|ref|XP_002267319.2| PREDICTED: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic-like [Vitis vinifera] gi|296083918|emb|CBI24306.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 299/389 (76%), Positives = 336/389 (86%), Gaps = 12/389 (3%)

Query: 1   MAMASSYLQCNHQ--------HQLHLPSIRPNGFSFFKPKTNFRRTQLIK----CTRKQV 48
           MAMASS   C+HQ         +  LPS RP+G S F+PK  F+RT  ++      RKQV
Sbjct: 1   MAMASSQFFCDHQLHPSCNSIRRTTLPSFRPHGSSSFRPKPQFQRTPFLRVRASAGRKQV 60

Query: 49  EVVYDPDERRNKLADEVDREAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISL 108
           E+VY+PDER N LADEVD+ A LSRLTLFSPCKIN FLRIT KR DGFHDLASLFHVISL
Sbjct: 61  EIVYNPDERINNLADEVDKNAGLSRLTLFSPCKINVFLRITGKRADGFHDLASLFHVISL 120

Query: 109 GDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSG 168
           GD IKFSLSP K++DRLSTNVPG+P+D+SNLIIKALNLYRKKT +DN+FW+HLDKKVP+G
Sbjct: 121 GDIIKFSLSPSKTKDRLSTNVPGVPLDESNLIIKALNLYRKKTGTDNYFWVHLDKKVPTG 180

Query: 169 AGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQ 228
           AGLGGGSSNAATALWAANQF+GC+ATEKELQ+WSSEIGSDIPFFFS+GAA+CTGRGEVV+
Sbjct: 181 AGLGGGSSNAATALWAANQFSGCLATEKELQQWSSEIGSDIPFFFSNGAAFCTGRGEVVE 240

Query: 229 DIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCIND 288
           DI  PIPLD+PMVL+KP +AC TAEVYKHLRLDQT+KVDP+TLLE+IS+N +SQDVCIND
Sbjct: 241 DISLPIPLDIPMVLVKPPQACSTAEVYKHLRLDQTSKVDPITLLEKISKNRISQDVCIND 300

Query: 289 LEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNEYEDV 348
           LE PAF+VLPSLKRLKQRIIAA RGQYDAVFMSGSGSTIVGIGSPDPPQFIYDD+EY+DV
Sbjct: 301 LEPPAFEVLPSLKRLKQRIIAASRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDDEYQDV 360

Query: 349 FLSEARFITREVNQWYRESASTNACSEPP 377
           FLSEA FITR  NQWY + AST AC   P
Sbjct: 361 FLSEASFITRAANQWYTQPASTGACYNSP 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|164604994|dbj|BAF98293.1| 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis] gi|208429108|gb|ACI26723.1| 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|388516267|gb|AFK46195.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255564440|ref|XP_002523216.1| 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase, putative [Ricinus communis] gi|223537512|gb|EEF39137.1| 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|363814504|ref|NP_001242887.1| uncharacterized protein LOC100812541 [Glycine max] gi|255641254|gb|ACU20904.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|7227898|sp|P93841.1|ISPE_SOLLC RecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic; AltName: Full=4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase; Short=CMK; AltName: Full=Ripening-associated protein pTOM41; Flags: Precursor gi|9454221|gb|AAF87717.1|AF263101_1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Solanum lycopersicum] gi|1899050|gb|AAB49936.1| ripening-associated protein, partial [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|145843639|gb|ABP96842.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Salvia miltiorrhiza] Back     alignment and taxonomy information
>gi|356549904|ref|XP_003543330.1| PREDICTED: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|189017044|gb|ACD70399.1| putative chloroplast 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|113473647|gb|ABI35992.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Catharanthus roseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
TAIR|locus:2039503383 CDPMEK "4-(cytidine 5'-phospho 0.914 0.916 0.710 2e-136
TIGR_CMR|DET_0405284 DET_0405 "4-diphosphocytidyl-2 0.611 0.827 0.314 4.2e-24
TIGR_CMR|BA_0043289 BA_0043 "4-diphosphocytidyl-2C 0.627 0.833 0.286 4.8e-20
TIGR_CMR|CHY_0188288 CHY_0188 "4-diphosphocytidyl-2 0.593 0.791 0.286 8.5e-20
TIGR_CMR|CPS_3556300 CPS_3556 "4-diphosphocytidyl-2 0.486 0.623 0.324 4.4e-19
UNIPROTKB|P62615283 ispE "IspE" [Escherichia coli 0.513 0.696 0.314 1.7e-18
TIGR_CMR|GSU_0660279 GSU_0660 "4-diphosphocytidyl-2 0.604 0.831 0.273 1.9e-17
TIGR_CMR|SO_3836284 SO_3836 "4-diphosphocytidyl-2C 0.5 0.676 0.301 7.4e-15
UNIPROTKB|P65178306 ispE "4-diphosphocytidyl-2-C-m 0.625 0.784 0.257 1.3e-14
TIGR_CMR|SPO_0318279 SPO_0318 "4-diphosphocytidyl-2 0.575 0.792 0.282 4.5e-14
TAIR|locus:2039503 CDPMEK "4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
 Identities = 253/356 (71%), Positives = 286/356 (80%)

Query:    20 SIRPNGFSFFKPKTNFRRTQL---IKCTRKQVEVVYDPDERRNKLADEVDREAPLSRLTL 76
             S + +  S F PK    R  L   +K +RKQVE+V+DPDER NK+ D+VD+EAPLSRL L
Sbjct:    18 SFKTSSSSSFSPK--LLRPLLSFSVKASRKQVEIVFDPDERLNKIGDDVDKEAPLSRLKL 75

Query:    77 FSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDD 136
             FSPCKIN FLRIT KREDGFHDLASLFHVISLGDTIKFSLSP KS+DRLSTNV G+PVD 
Sbjct:    76 FSPCKINVFLRITGKREDGFHDLASLFHVISLGDTIKFSLSPSKSKDRLSTNVQGVPVDG 135

Query:   137 SNLIIKALNLYRKKTESDNFFWIHLDKKVPXXXXXXXXXXXXXTALWAANQFNGCVATEK 196
              NLIIKALNLYRKKT S+ FFWIHLDKKVP             TALWAAN+ NG + TE 
Sbjct:   136 RNLIIKALNLYRKKTGSNRFFWIHLDKKVPTGAGLGGGSSNAATALWAANELNGGLVTEN 195

Query:   197 ELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYK 256
             ELQ+WSSEIGSDIPFFFSHGAAYCTGRGE+VQD+PPP PLD+PMVLIKPREAC TAEVYK
Sbjct:   196 ELQDWSSEIGSDIPFFFSHGAAYCTGRGEIVQDLPPPFPLDLPMVLIKPREACSTAEVYK 255

Query:   257 HLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYD 316
              LRLDQT+ ++PLTLLE ++ NG+SQ +C+NDLE PAF VLPSLKRLKQRIIA+GRG+YD
Sbjct:   256 RLRLDQTSNINPLTLLENVTSNGVSQSICVNDLEPPAFSVLPSLKRLKQRIIASGRGEYD 315

Query:   317 AVFMXXXXXXXXXXXXPDPPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTNA 372
             AVFM            PDPPQFIYDD EY++VFLSEA F+TRE N+WY+E AS NA
Sbjct:   316 AVFMSGSGSTIIGIGSPDPPQFIYDDEEYKNVFLSEANFMTREANEWYKEPASANA 371
GO:0005524 "ATP binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016114 "terpenoid biosynthetic process" evidence=IEA
GO:0050515 "4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity" evidence=IEA;ISS
GO:0006783 "heme biosynthetic process" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0010114 "response to red light" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
TIGR_CMR|DET_0405 DET_0405 "4-diphosphocytidyl-2C-methyl-D-erythritol kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0043 BA_0043 "4-diphosphocytidyl-2C-methyl-D-erythritol kinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0188 CHY_0188 "4-diphosphocytidyl-2C-methyl-D-erythritol kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3556 CPS_3556 "4-diphosphocytidyl-2C-methyl-D-erythritol kinase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P62615 ispE "IspE" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0660 GSU_0660 "4-diphosphocytidyl-2C-methyl-D-erythritol kinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3836 SO_3836 "4-diphosphocytidyl-2C-methyl-D-erythritol kinase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P65178 ispE "4-diphosphocytidyl-2-C-methyl-D-erythritol kinase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0318 SPO_0318 "4-diphosphocytidyl-2C-methyl-D-erythritol kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O81014ISPE_ARATH2, ., 7, ., 1, ., 1, 4, 80.80530.86970.8720yesno
P56848ISPE_MENPI2, ., 7, ., 1, ., 1, 4, 80.73020.92960.8814N/Ano
P93841ISPE_SOLLC2, ., 7, ., 1, ., 1, 4, 80.75130.94530.9052N/Ano
Q8S2G0ISPE_ORYSJ2, ., 7, ., 1, ., 1, 4, 80.71700.92960.8902yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.4.2LOW CONFIDENCE prediction!
3rd Layer2.7.10.983
4th Layer2.7.1.1480.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
COG1947289 COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-eryt 8e-72
TIGR00154294 TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-er 7e-54
PRK00128286 PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-ery 3e-53
PRK14609269 PRK14609, PRK14609, 4-diphosphocytidyl-2-C-methyl- 6e-48
PRK00343271 PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-ery 9e-47
PRK02534312 PRK02534, PRK02534, 4-diphosphocytidyl-2-C-methyl- 1e-45
PRK14611275 PRK14611, PRK14611, 4-diphosphocytidyl-2-C-methyl- 2e-44
PRK14612276 PRK14612, PRK14612, 4-diphosphocytidyl-2-C-methyl- 1e-42
PRK14616287 PRK14616, PRK14616, 4-diphosphocytidyl-2-C-methyl- 8e-41
PRK14608290 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl- 8e-41
PRK14614280 PRK14614, PRK14614, 4-diphosphocytidyl-2-C-methyl- 4e-40
PRK00650288 PRK00650, PRK00650, 4-diphosphocytidyl-2-C-methyl- 2e-38
PRK04181257 PRK04181, PRK04181, 4-diphosphocytidyl-2-C-methyl- 2e-35
PRK14615296 PRK14615, PRK14615, 4-diphosphocytidyl-2-C-methyl- 3e-35
PRK03188300 PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl- 8e-34
PRK14613297 PRK14613, PRK14613, 4-diphosphocytidyl-2-C-methyl- 4e-27
PRK14610283 PRK14610, PRK14610, 4-diphosphocytidyl-2-C-methyl- 2e-22
PRK05905258 PRK05905, PRK05905, hypothetical protein; Provisio 2e-19
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 2e-10
PRK01212301 PRK01212, PRK01212, homoserine kinase; Provisional 1e-06
COG0083299 COG0083, ThrB, Homoserine kinase [Amino acid trans 2e-05
TIGR00191302 TIGR00191, thrB, homoserine kinase 0.002
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 0.003
>gnl|CDD|224858 COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information 
 Score =  225 bits (577), Expect = 8e-72
 Identities = 98/261 (37%), Positives = 132/261 (50%), Gaps = 7/261 (2%)

Query: 71  LSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVP 130
           +      +P KIN FL +T KR DG+H+L +LF  I LGD +            L T   
Sbjct: 1   MMSTKFPAPAKINLFLHVTGKRADGYHELETLFQFIDLGDELTIRPRDDDGFIVLGTFAD 60

Query: 131 GIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNG 190
           G+P D+ NL+ +A  L RK+T       IHLDK +P GAGLGGGSS+AA  L A N+  G
Sbjct: 61  GLPTDE-NLVYRAAELLRKRTGIAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWG 119

Query: 191 CVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACP 250
              + +EL E    +G+D+PFF S G A+  GRGE ++ +  P       VL KP     
Sbjct: 120 LGLSLEELAELGLRLGADVPFFLSGGTAFAEGRGEKLEPLEDPPEKWY--VLAKPGVGVS 177

Query: 251 TAEVYKHLRLDQTT-KVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIA 309
           T EVYK   L + T K +PL     +          INDLE  A ++ P +K     ++ 
Sbjct: 178 TKEVYKDPELTRNTPKSEPLIAALSLENLKQIAPFLINDLEKVALRLYPEVKEALSELLE 237

Query: 310 AGRGQYDAVFMSGSGSTIVGI 330
            G        MSGSGST+  +
Sbjct: 238 YGA---LPARMSGSGSTVFAL 255

Length = 289
>gnl|CDD|188029 TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>gnl|CDD|234652 PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|237766 PRK14609, PRK14609, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|234731 PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|235049 PRK02534, PRK02534, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|184767 PRK14611, PRK14611, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|237767 PRK14612, PRK14612, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|237769 PRK14616, PRK14616, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|237765 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|173078 PRK14614, PRK14614, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|134340 PRK00650, PRK00650, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|235243 PRK04181, PRK04181, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|237768 PRK14615, PRK14615, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|235110 PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|173077 PRK14613, PRK14613, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|184766 PRK14610, PRK14610, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>gnl|CDD|235642 PRK05905, PRK05905, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional Back     alignment and domain information
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129295 TIGR00191, thrB, homoserine kinase Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 384
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 100.0
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK05905258 hypothetical protein; Provisional 100.0
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 100.0
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 100.0
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 100.0
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PLN02451370 homoserine kinase 100.0
PRK01212301 homoserine kinase; Provisional 100.0
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 100.0
PTZ00299336 homoserine kinase; Provisional 100.0
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 100.0
PTZ00298328 mevalonate kinase; Provisional 100.0
PRK03926302 mevalonate kinase; Provisional 100.0
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.97
PRK05101382 galactokinase; Provisional 99.95
PRK01123282 shikimate kinase; Provisional 99.95
PRK03817351 galactokinase; Provisional 99.94
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.93
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.93
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.92
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.92
PRK05322387 galactokinase; Provisional 99.92
PRK00555363 galactokinase; Provisional 99.91
COG0153390 GalK Galactokinase [Carbohydrate transport and met 99.89
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.89
COG1907312 Predicted archaeal sugar kinases [General function 99.87
PLN02521 497 galactokinase 99.86
PLN02677387 mevalonate kinase 99.85
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.83
PLN02865423 galactokinase 99.82
PTZ00290468 galactokinase; Provisional 99.8
KOG1537355 consensus Homoserine kinase [Amino acid transport 99.78
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.78
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 99.77
COG2605333 Predicted kinase related to galactokinase and meva 99.7
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 99.63
COG4542293 PduX Protein involved in propanediol utilization, 99.62
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 99.37
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 99.3
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.18
PLN02407343 diphosphomevalonate decarboxylase 99.12
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 99.06
KOG0631 489 consensus Galactokinase [Carbohydrate transport an 98.65
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 98.62
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 98.3
PF1050952 GalKase_gal_bdg: Galactokinase galactose-binding s 96.43
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 93.95
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 92.59
KOG0631489 consensus Galactokinase [Carbohydrate transport an 81.39
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-54  Score=411.80  Aligned_cols=279  Identities=35%  Similarity=0.533  Sum_probs=228.9

Q ss_pred             eeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEee-CCCCCCCCChHHHHHHHHHHHH
Q 016716           72 SRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTN-VPGIPVDDSNLIIKALNLYRKK  150 (384)
Q Consensus        72 ~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~-~~~lp~d~~Nli~ka~~~~~~~  150 (384)
                      +++++.|||||||||+|+|+|+||||.|.|+|+.||++|+++|+..+..+ +.+.++ ..++|.|+ |+++||++.+++.
T Consensus         2 ~~~~~~apAKiNL~L~V~gkr~DGYHel~sl~~~id~~D~l~i~~~~~~~-~~~~~~~~~~lp~~~-NLv~rAa~ll~~~   79 (289)
T COG1947           2 MSTKFPAPAKINLFLHVTGKRADGYHELETLFQFIDLGDELTIRPRDDDG-FIVLGTFADGLPTDE-NLVYRAAELLRKR   79 (289)
T ss_pred             cceEeeccceEEEEEEecccCCCCceeeEEEEEEeccCCEEEEEECCCCC-ceEecCCCCCCCCcc-hHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999887442 444433 45788876 9999999999999


Q ss_pred             cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeC
Q 016716          151 TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDI  230 (384)
Q Consensus       151 ~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l  230 (384)
                      ++...|++|+|+|+||+|+|||||||||+|+|.++|++|+.+++.+||.+++.++|+|||||++||+++++|+||+++++
T Consensus        80 ~~~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDVPffl~g~tA~a~G~GE~l~~~  159 (289)
T COG1947          80 TGIAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLGADVPFFLSGGTAFAEGRGEKLEPL  159 (289)
T ss_pred             hCCCCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcCeeeeCCceEEEEccceeeEC
Confidence            99888999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCch--HHHhccccccccccchHHHHHHHHHH
Q 016716          231 PPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKRLKQRII  308 (384)
Q Consensus       231 ~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~l~~~l~  308 (384)
                      +. .| ..+++++.|++.+||+++|+. +...........+..++...++..  ....||||++....+|++++....+.
T Consensus       160 ~~-~~-~~~~vl~~P~v~vsT~~vy~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NdLe~~~~~~~p~v~~~~~~l~  236 (289)
T COG1947         160 ED-PP-EKWYVLAKPGVGVSTKEVYKD-PELTRNTPKSEPLIAALSLENLKQIAPFLINDLEKVALRLYPEVKEALSELL  236 (289)
T ss_pred             CC-CC-CceEEEEeCCCCCChHHHHcC-cCcccccCCchhhhHHHhhhhHhhhccccccchHHHHHHhChHHHHHHHHHh
Confidence            74 23 578999999999999999993 332222222222333333333322  22449999999999999999888888


Q ss_pred             HcCCCCCCceeeeccccceeEeccCC-CccchhhcccccchhhhhhHHHhhcCCceEEeccccC
Q 016716          309 AAGRGQYDAVFMSGSGSTIVGIGSPD-PPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTN  371 (384)
Q Consensus       309 ~~Ga~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~~~~~~~f~~~~~~~~~~~~~w~~~~~~~~  371 (384)
                      +.|+   .++.|||||||||++++++ .+++++             +.+....+.|++......
T Consensus       237 ~~ga---~~~~mSGSGstvF~l~~~~~~a~~~~-------------~~l~~~~~~~~~~~~~~~  284 (289)
T COG1947         237 EYGA---LPARMSGSGSTVFALFDTEKEAQRVA-------------EQLPKGVCGWVVKGVRLS  284 (289)
T ss_pred             hccc---ccceEecCCCcEEEEeCChHHHHHHH-------------HHhhcccCCcEEEEeecc
Confidence            8887   6899999999999999874 444443             333334556887765443

>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry [] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
2ww4_A283 A Triclinic Crystal Form Of E. Coli 4-Diphosphocyti 5e-18
1oj4_A283 Ternary Complex Of 4-Diphosphocytidyl-2-C-Methyl-D- 7e-18
4dxl_A318 Crystal Structure Of Ispe (4-Diphosphocytidyl-2-C-M 4e-17
1uek_A275 Crystal Structure Of 4-(Cytidine 5'-Diphospho)-2c-M 5e-17
3pyd_A306 Crystal Structure Of 4-Diphosphocytidyl-2-C-Methyl- 1e-16
2v2q_A271 Ispe In Complex With Ligand Length = 271 2e-14
>pdb|2WW4|A Chain A, A Triclinic Crystal Form Of E. Coli 4-Diphosphocytidyl-2c- Methyl-D-Erythritol Kinase Length = 283 Back     alignment and structure 
Iteration: 1

 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 19/197 (9%)
Query: 78  SPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRD----RLSTNVPGIP 133
           SP K+N FL IT +R DG+H L +LF  +  GDTI   L     RD    RL T V G+ 
Sbjct: 7   SPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIEL-----RDDGDIRLLTPVEGVE 61
Query: 134 VDDSNLIIKALNLYRK------KTESDNFFWIHLDKKVPXXXXXXXXXXXXXTALWAANQ 187
            +D NLI++A  L  K      +  + +   I +DK++P             T L A N 
Sbjct: 62  HED-NLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNH 120
Query: 188 FNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPRE 247
              C  +  EL E    +G+D+P F    AA+  G GE++  + PP   +   ++  P  
Sbjct: 121 LWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEILTPVDPP---EKWYLVAHPGV 177
Query: 248 ACPTAEVYKHLRLDQTT 264
           + PT  ++K   L + T
Sbjct: 178 SIPTPVIFKDPELPRNT 194
>pdb|1OJ4|A Chain A, Ternary Complex Of 4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase Length = 283 Back     alignment and structure
>pdb|4DXL|A Chain A, Crystal Structure Of Ispe (4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase) From Mycobacterium Abscessus, Bound To Cmp And Atp Length = 318 Back     alignment and structure
>pdb|1UEK|A Chain A, Crystal Structure Of 4-(Cytidine 5'-Diphospho)-2c-Methyl-D- Erythritol Kinase Length = 275 Back     alignment and structure
>pdb|3PYD|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase (Ispe) From Mycobacterium Tuberculosis Length = 306 Back     alignment and structure
>pdb|2V2Q|A Chain A, Ispe In Complex With Ligand Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 7e-98
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 5e-83
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 2e-80
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 7e-76
1h72_C296 HK, homoserine kinase; transferase, threonine bios 9e-09
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 2e-08
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 2e-05
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Length = 271 Back     alignment and structure
 Score =  291 bits (747), Expect = 7e-98
 Identities = 77/261 (29%), Positives = 124/261 (47%), Gaps = 13/261 (4%)

Query: 72  SRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPG 131
             + + SP KIN  L +  +   G+H++ +L+  I   D I       +   R+ TN  G
Sbjct: 3   HMIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEIYIR----EGVLRVETN-IG 57

Query: 132 IPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGC 191
           IP  + NL+ K L  + + T  +  + I + K +P GAGLGGGSSN A  L   N+  G 
Sbjct: 58  IP-QEENLVYKGLREFERITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGS 116

Query: 192 VATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPT 251
             +E+EL+E    I +D PFF    +A   G+GEV++ +   I   +   L+ P+ +  T
Sbjct: 117 PLSEEELRELVGSISADAPFFLLGKSAIGRGKGEVLEPVETEISGKI--TLVIPQVSSST 174

Query: 252 AEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAG 311
             VY  LR +     +      Q   +G  +++  N L   A ++ P +  + + +   G
Sbjct: 175 GRVYSSLREEHFVTPEYAEEKIQRIISGEVEEIE-NVLGDIARELYPEINEVYRFVEYLG 233

Query: 312 RGQYDAVFMSGSGSTIVGIGS 332
                  F+SGSGST+   G 
Sbjct: 234 ----FKPFVSGSGSTVYFFGG 250
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Length = 306 Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Length = 283 Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Length = 275 Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Length = 296 Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Length = 298 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 100.0
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 100.0
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 100.0
1h72_C296 HK, homoserine kinase; transferase, threonine bios 100.0
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 100.0
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 100.0
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 100.0
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 100.0
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 100.0
1pie_A419 Galactokinase; galactose, galactosemia, transferas 100.0
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 100.0
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.98
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 99.97
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 99.97
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 99.97
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.97
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.96
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 99.96
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 99.96
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.94
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.94
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 99.91
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.91
3v2u_C 520 Protein GAL3; rossmann fold, GHMP superfamily, tra 99.82
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 99.82
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-52  Score=408.30  Aligned_cols=262  Identities=27%  Similarity=0.404  Sum_probs=229.7

Q ss_pred             eEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC---CCCCCCCChHHHHHHHHHHH
Q 016716           73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV---PGIPVDDSNLIIKALNLYRK  149 (384)
Q Consensus        73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~---~~lp~d~~Nli~ka~~~~~~  149 (384)
                      .++++|||||||||+|+|+|+||||.|.|+|++|++||++++++.+.   ..+++..   .++|.+++|++++|++.+++
T Consensus         5 ~~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~---~~i~~~g~~~~~~p~~~~Nlv~~A~~~l~~   81 (306)
T 3pyf_A            5 SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADV---LSLELVGEGADQLPTDERNLAWQAAELMAE   81 (306)
T ss_dssp             CEEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSS---CEEEEESTTGGGSCCSTTSHHHHHHHHHHH
T ss_pred             cEEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCC---CEEEEeCCCccCCCCCCccHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999998653   3344332   35788889999999999999


Q ss_pred             HcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeee
Q 016716          150 KTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQD  229 (384)
Q Consensus       150 ~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~  229 (384)
                      +++...|++|+++|+||.|+|||||||+++|++.|+|++++.++++++|+++|.++|.|+|+|++||+++..|+|+.+.+
T Consensus        82 ~~g~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~~Dv~~~~~Gg~~~~~g~ge~~~~  161 (306)
T 3pyf_A           82 HVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSDVPFALHGGTALGTGRGEELAT  161 (306)
T ss_dssp             HTTCCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTHHHHHHBSEEEECSSSSCCEE
T ss_pred             HhCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCceeecCceEEEEeeCCeEEE
Confidence            99988899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCCCCCCccEEEEcCCCCcchHHHHhhhcccc----CCCC-CHHHHHHHHHhCCCch--HHHhccccccccccchHHHH
Q 016716          230 IPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQ----TTKV-DPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKR  302 (384)
Q Consensus       230 l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~----~~~~-d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~  302 (384)
                      ++.  |++|++|+++|++.++|+++|+.++...    .... ....++.++.++|+..  ..+.|+||+++...+|++++
T Consensus       162 l~~--~~~~~~vl~~P~~~vsT~~a~~~l~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~l~n~le~~~~~~~P~l~~  239 (306)
T 3pyf_A          162 VLS--RNTFHWVLAFADSGLLTSAVYNELDRLREVGDPPRLGEPGPVLAALAAGDPDQLAPLLGNEMQAAAVSLDPALAR  239 (306)
T ss_dssp             ECC--SSCEEEEEEECSSCCCHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHTCHHHHGGGCEETTHHHHHHHCTHHHH
T ss_pred             ccC--CCCcEEEEEECCCCCcHHHHHHhhhhhccccccccccCHHHHHHHHHhCCHHHHHHHhccchHHHHHHhChHHHH
Confidence            753  3579999999999999999999987521    1222 3556888999988754  46779999999888999999


Q ss_pred             HHHHHHHcCCCCCCceeeeccccceeEeccCC-Cccchhhc
Q 016716          303 LKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPD-PPQFIYDD  342 (384)
Q Consensus       303 l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~  342 (384)
                      +++.++++|+   +|+.|||||||||++++++ .++++.+.
T Consensus       240 i~~~~~~~Ga---~ga~mSGsGptvfal~~~~~~a~~~~~~  277 (306)
T 3pyf_A          240 ALRAGVEAGA---LAGIVSGSGPTCAFLCTSASSAIDVGAQ  277 (306)
T ss_dssp             HHHHHHHTTC---SEEEECTTSSEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHhcCC---CEEEEcCcchhheEEeCCHHHHHHHHHH
Confidence            9999999998   8999999999999999873 34444443
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 384
d1oj4a1163 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-me 1e-42
d1ueka1148 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-me 1e-34
d1h72c1163 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Met 2e-13
d1oj4a2120 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C 2e-10
d1ueka2120 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C 3e-10
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Length = 163 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Escherichia coli [TaxId: 562]

 Score =  144 bits (364), Expect = 1e-42
 Identities = 65/164 (39%), Positives = 85/164 (51%), Gaps = 8/164 (4%)

Query: 73  RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGI 132
           R    SP K+N FL IT +R DG+H L +LF  +  GDTI   L       RL T V G+
Sbjct: 2   RTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDI-RLLTPVEGV 60

Query: 133 PVDDSNLIIKALNLYRKKTESDNF------FWIHLDKKVPSGAGLGGGSSNAATALWAAN 186
             +D NLI++A  L  K               I +DK++P G GLGGGSSNAAT L A N
Sbjct: 61  EHED-NLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALN 119

Query: 187 QFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDI 230
               C  +  EL E    +G+D+P F    AA+  G GE++  +
Sbjct: 120 HLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEILTPV 163
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Length = 148 Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 163 Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Length = 120 Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Length = 120 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 100.0
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 100.0
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.95
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.74
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.73
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.73
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.65
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.63
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 99.57
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.49
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.45
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 98.44
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 97.27
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 97.0
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 96.92
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 96.89
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 96.83
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 96.75
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.7e-37  Score=264.73  Aligned_cols=147  Identities=33%  Similarity=0.523  Sum_probs=133.9

Q ss_pred             EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCC
Q 016716           74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTES  153 (384)
Q Consensus        74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~  153 (384)
                      |+.+|||||||+|+|.|||.||||.|.|+|+.||+||+++|++.++.  ..+.     .|.+++|+++||++.++++++.
T Consensus         1 ~~~~aPAKINL~L~V~~kr~dGyH~l~s~~~~i~l~D~i~i~~~~~~--~~~~-----~p~~~~Nlv~ka~~~l~~~~~~   73 (148)
T d1ueka1           1 MERLAPAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPVSSG--LHFQ-----GPYGRENLAYRAASLYLEAAGQ   73 (148)
T ss_dssp             CEEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEESSC--EEEE-----STTGGGSHHHHHHHHHHHHTTC
T ss_pred             CcccccceEeeeEeeCccCCCCcceeeEEEEEEECccccEEEccccc--cccc-----ccccccchhhhhhhhhHHhcCC
Confidence            46789999999999999999999999999999999999999987642  3332     2556789999999999999999


Q ss_pred             CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeC
Q 016716          154 DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDI  230 (384)
Q Consensus       154 ~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l  230 (384)
                      ..+++|+|+|+||+|+|||||||+|||+++++|++++.++   +|.++|.++|+|||||+.++.+++.|+||+++|+
T Consensus        74 ~~~~~I~i~K~IP~~aGLGGGSsnAAa~l~~l~~~~~~~~---~l~~la~~iGsDVPffl~~~~~~~~G~Ge~l~pl  147 (148)
T d1ueka1          74 PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGADVPFFLLGRGAEARGVGERLKPL  147 (148)
T ss_dssp             CCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCTTHHHHHHCSEEEEETTTTEEEEE
T ss_pred             CceEEEEEEeeEEEeeeccCCchhhhhHHHHHHHhhhhhh---HHHHhhcccCCCchhhccCCCEEEEEeCcEeEEC
Confidence            8999999999999999999999999999999999998765   4778999999999999999999999999999875
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure