Citrus Sinensis ID: 016749

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccEEEEEcccEEHHHHHHHHHHHHHHHHHHHcccccHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccEEEEcccccccccccccccEEcccccccccHHHHHcccccccccEEcccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccEEEEEEcccEEHHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGLASVIysgvqaphkfdslllrfsptstsqvpkltsllhfcnsqaptfysvshnrrgqyspllacakgteqeddlstsevgrsssqshendntshspttvddaerqiegresytsSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFklfaseeddtdlsdnfivktcqrfipvttyydgnrfftnqdgmrkaTPLLLTVAVIELSDIafavdsipavfgvtrdpfivFSSNLFAILGLRSLFTLISEGmadleylqPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Flexible Loop (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVgrsssqshendntshspttvddaerqIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLlslmkksd
Low Complexity Region (SEG)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Disordered region (IsUnstruct)
*****VIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLAC**************************************************SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLS******
Disordered Region (DISOPRED)
***ASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSV***************************************DNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA***********FIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKS*
Disordered Region (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAK************************************ERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Disordered Region (DISPRO)
*GLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAK******************************TTVDDA***IEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKK**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
P96554	319	Uncharacterized membrane	yes	no	0.671	0.805	0.434	2e-55
P60067	320	Inner membrane protein al	yes	no	0.707	0.846	0.379	4e-48
Q8XAJ0	321	Inner membrane protein al	N/A	no	0.582	0.694	0.424	5e-47
Q8FDE1	321	Inner membrane protein al	yes	no	0.582	0.694	0.424	5e-47
P42601	321	Inner membrane protein al	N/A	no	0.582	0.694	0.424	5e-47
Q83Q35	320	Inner membrane protein al	yes	no	0.582	0.696	0.424	5e-47
Q8ZLX2	322	Inner membrane protein al	yes	no	0.582	0.692	0.433	1e-46
Q8Z3L5	322	Inner membrane protein al	N/A	no	0.582	0.692	0.433	1e-46
Q92GA4	301	Uncharacterized membrane	yes	no	0.702	0.893	0.337	4e-43
Q4UK32	301	Uncharacterized membrane	yes	no	0.702	0.893	0.344	1e-42

>sp|P96554|Y319_MYXXA Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/260 (43%), Positives = 167/260 (64%), Gaps = 3/260 (1%)

Query: 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNR 181
           A  VS A+ FG GV +  G     +F  GY++E+SLSVDN+FVFV+IF   ++P +YQ+R
Sbjct: 48  ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQHR 107

Query: 182 VLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFI 241
           VL +GI  A+  R  +I  G A L RF  +  V  G L+ +  KLF     + +  +  +
Sbjct: 108 VLFWGILSALALRAIMIFAGVAMLARFHWLIYVFGGFLIITGVKLFLQRNKEDNPEEGAL 167

Query: 242 VKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRD 301
           ++  +R IP T  +DG+ FFT ++G + ATPLL+ + ++E SDI FA+DSIPA+F VT D
Sbjct: 168 MRLARRTIPSTPNFDGHHFFTVENGRKLATPLLMALLLVEASDILFALDSIPAIFAVTTD 227

Query: 302 PFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKM-ILDYFGFHISTE 360
           PFIVF+SN+FAILGLRS+F +++  +    YL+  ++ VL F+G KM I+D+    +  E
Sbjct: 228 PFIVFTSNIFAILGLRSMFFMLAGAVEKFSYLKVGLSAVLVFVGTKMAIIDF--VKMPPE 285

Query: 361 ASLSFVATSLSAGVLLSLMK 380
            SLS +A  L A ++ SL+K
Sbjct: 286 VSLSVIAGLLGASIVASLIK 305

Myxococcus xanthus (taxid: 34)

>sp|P60067|ALX_PHOLL Inner membrane protein alx OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=alx PE=3 SV=1

 Score =  192 bits (488), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 167/282 (59%), Gaps = 11/282 (3%)

Query: 106 RQIEGRESYTSSVKTVAFCVSTAVAFGLG--------VGFIEGASKASEFFAGYILEQSL 157
           R+ E   S+  +       VS ++ F LG        VG     S+   F  GY+LE++L
Sbjct: 30  RKKEQAMSFRQAAVWSVIWVSLSLLFALGLWWYCRETVGVAVANSQVMAFLTGYLLEKAL 89

Query: 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAG 217
           +VDN+FV++++F YF +P   Q RVL YG+ GAIV R  +I  G+  + +F  +  +   
Sbjct: 90  AVDNVFVWLMLFSYFAIPANLQRRVLIYGVLGAIVLRTVMIFAGSWLVSQFSWILYLFGL 149

Query: 218 ILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTV 277
            LL +  K+   +EDD+ + D   V+  +  I +T    G RFF  + G+  ATPL+L +
Sbjct: 150 FLLVTGVKMALVKEDDSPIGDKPFVRWLKAHIRITDNLHGERFFVKEKGLLYATPLILVL 209

Query: 278 AVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSI 337
            ++E+SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++        L+  +
Sbjct: 210 ILVEISDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAEKFTMLKYGL 269

Query: 338 AVVLGFIGCKM-ILDYFGFHISTEASLSFVATSLSAGVLLSL 378
           +V+L FIG KM I+D+  +HI    SL  VA+ L+  +++++
Sbjct: 270 SVILAFIGIKMLIIDF--YHIPIGGSLGAVASILAVTMIINV 309

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

>sp|Q8XAJ0|ALX_ECO57 Inner membrane protein alx OS=Escherichia coli O157:H7 GN=alx PE=3 SV=1

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 145/224 (64%), Gaps = 1/224 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 366
           ++        L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 255 LAGVAERFSMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q8FDE1|ALX_ECOL6 Inner membrane protein alx OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=alx PE=3 SV=1

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 145/224 (64%), Gaps = 1/224 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 366
           ++        L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 255 LAGVAERFSMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P42601|ALX_ECOLI Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx PE=1 SV=2

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 145/224 (64%), Gaps = 1/224 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 366
           ++        L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 255 LAGVAERFSMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q83Q35|ALX_SHIFL Inner membrane protein alx OS=Shigella flexneri GN=alx PE=3 SV=1

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 145/224 (64%), Gaps = 1/224 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 366
           ++        L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 255 LAGVAERFSMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

Shigella flexneri (taxid: 623)

>sp|Q8ZLX2|ALX_SALTY Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alx PE=3 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/224 (43%), Positives = 145/224 (64%), Gaps = 1/224 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T   +   FF 
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 366
           +S        L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 255 LSGVAERFSMLKYGLAVILVFIGIKMLIVDF-YHIPIAISLGVV 297

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q8Z3L5|ALX_SALTI Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/224 (43%), Positives = 145/224 (64%), Gaps = 1/224 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T   +   FF 
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 366
           +S        L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 255 LSGVAERFSMLKYGLAVILVFIGIKMLIVDF-YHIPIAISLGVV 297

Salmonella typhi (taxid: 90370)

>sp|Q92GA4|Y1219_RICCN Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC1219 PE=3 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 165/270 (61%), Gaps = 1/270 (0%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  SV    F +  A  FG+ V +  GA  A E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKESVLFSLFYLVIACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232
           K+P  YQ+RVL +GI G I+FR  +I  G   + +F  +  + A IL+ +  K F     
Sbjct: 89  KIPWQYQHRVLFFGIIGVIIFRAVMIYGGIILINKFAWLLYIFAVILIATGIKTFYVSHK 148

Query: 233 DTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSI 292
             D+ +++I K+  + + +T   +GN+F   ++     TPL +++ +IE  D+ FA+DSI
Sbjct: 149 TFDIQNSYIYKSIIKNLNITPNLEGNKFIVKRNNKLYCTPLFISLVLIEAIDLVFAIDSI 208

Query: 293 PAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352
           PA+F +T D +I+++SN+FAILGLR+LF  ++E +    Y++ S+A++L FI  K+ + +
Sbjct: 209 PAIFAITNDVYIIYTSNIFAILGLRALFFCLAEIVERFSYIKYSLALILIFISFKIFIHH 268

Query: 353 FGFHISTEASLSFVATSLSAGVLLSLMKKS 382
           +   I    + +   T L  G++ S+++K+
Sbjct: 269 Y-IAIPEYVAFTVTMTLLLFGIIASIIRKN 297

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

>sp|Q4UK32|Y1252_RICFE Uncharacterized membrane protein RF_1252 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_1252 PE=3 SV=2

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 165/270 (61%), Gaps = 1/270 (0%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  SV    F    A  FG+   +  GA  A E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKESVLFSLFYFVIACLFGIYFYYNTGAEHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232
           K+P  YQ+RVL +GI G I+FR  +I  GT  + +F  +  + A IL+ +  K F     
Sbjct: 89  KIPGKYQHRVLFFGIIGVIIFRAIMIYGGTILINKFAWLLYIFAVILIATGIKTFYVSHK 148

Query: 233 DTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSI 292
             D+ +++I K+  + + +T   +G++F   ++     TPL +++ +IE  D+ FA+DSI
Sbjct: 149 TFDIQNSYIYKSIVKNLNITPNLEGDKFVVKRNNKLYFTPLFISLVLIEAIDLVFAIDSI 208

Query: 293 PAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352
           PA+F +T D +I+++SN+FAILGLR+LF  ++E +    Y++ S+A++L FIG K+ + +
Sbjct: 209 PAIFAITNDVYIIYTSNIFAILGLRALFFCLAEIVERFSYIKYSLALILIFIGFKIFIHH 268

Query: 353 FGFHISTEASLSFVATSLSAGVLLSLMKKS 382
           +   I    SL    T L  G++ S+++K+
Sbjct: 269 Y-IAIPAYVSLIVTITLLLFGIIASIIRKN 297

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
224068600	372	predicted protein [Populus trichocarpa]	0.963	0.991	0.733	1e-152
356536907	363	PREDICTED: uncharacterized membrane prot	0.945	0.997	0.682	1e-135
225439789	389	PREDICTED: uncharacterized membrane prot	0.950	0.935	0.669	1e-133
356548192	352	PREDICTED: uncharacterized membrane prot	0.916	0.997	0.671	1e-132
449448697	362	PREDICTED: uncharacterized membrane prot	0.921	0.975	0.638	1e-130
18416778	384	TerC integral membrane domain-containing	0.976	0.973	0.665	1e-130
297807259	374	PDE149 [Arabidopsis lyrata subsp. lyrata	0.963	0.986	0.674	1e-129
297741505	365	unnamed protein product [Vitis vinifera]	0.892	0.936	0.659	1e-129
21592518	384	transmembrane transport protein-like pro	0.976	0.973	0.663	1e-129
9759380	344	unnamed protein product [Arabidopsis tha	0.845	0.941	0.731	1e-127

>gi|224068600|ref|XP_002326155.1| predicted protein [Populus trichocarpa] gi|222833348|gb|EEE71825.1| predicted protein [Populus trichocarpa]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/386 (73%), Positives = 321/386 (83%), Gaps = 17/386 (4%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           M L SVI++    P     L L+ SP +       T  + F +   P+F SV   RRGQ 
Sbjct: 1   MRLTSVIHNNSIIP-----LSLKVSPAN------YTYSVQFSHPHFPSFNSVISKRRGQN 49

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHENDN---TSHSPTTVDDAERQIEGRESYTSS 117
           SP+ +CA+GTEQEDDLS SE  ++SSQ+ ++ +   TS +P +VD AE +++G  +Y +S
Sbjct: 50  SPI-SCARGTEQEDDLSPSEAVKTSSQTRDDVSKFITSTAPPSVDKAEEKVKG--NYKTS 106

Query: 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM 177
           +KTVA CV TAVAFG G+G  +G  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP+M
Sbjct: 107 IKTVALCVCTAVAFGFGIGLKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLM 166

Query: 178 YQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLS 237
           YQNRVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL LA ILL+SSFKLFA+EEDD+DLS
Sbjct: 167 YQNRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLFLATILLYSSFKLFATEEDDSDLS 226

Query: 238 DNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFG 297
           DNFIVKTCQRFIPVT+ YDGN+F T +DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFG
Sbjct: 227 DNFIVKTCQRFIPVTSNYDGNKFITREDGLWKATPLLLTVAVIELSDIAFAVDSIPAVFG 286

Query: 298 VTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHI 357
           VTRDPFIVFSSNLFAILGLRSL+TLISEGMADLEYLQPSIA+VLGFIGCKMILD+ GFHI
Sbjct: 287 VTRDPFIVFSSNLFAILGLRSLYTLISEGMADLEYLQPSIAIVLGFIGCKMILDFMGFHI 346

Query: 358 STEASLSFVATSLSAGVLLSLMKKSD 383
           STEASL FVATSL AGVLLSLMKKSD
Sbjct: 347 STEASLGFVATSLGAGVLLSLMKKSD 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536907|ref|XP_003536974.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/384 (68%), Positives = 305/384 (79%), Gaps = 22/384 (5%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV+++GV+ P   + +    +P      P   S LH   S   +F SV H R    
Sbjct: 1   MGLASVVHNGVRIPFNLEHI---HTP------PFRCSALHHPIS---SFCSVYHYRPPHR 48

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++     +    SEV R S+Q +++      SPT      ++  G E Y+SSV+
Sbjct: 49  FPLL-CSRRIGHHN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEDYSSSVR 99

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 100 TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVAYQ 159

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL+LIL+GTATLQRFEAVNL+LA ILLFSSFKLFASEED++DLSDN
Sbjct: 160 NRVLSYGIAGAVVFRLTLILIGTATLQRFEAVNLLLAAILLFSSFKLFASEEDESDLSDN 219

Query: 240 FIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 299
           F+VKTCQ+FIPVTTYYDGNRF TN DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVT
Sbjct: 220 FVVKTCQKFIPVTTYYDGNRFITNLDGVWKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 279

Query: 300 RDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHIST 359
           RDPF+VF+SNLFAILGLRSLF +ISEGM++L+YLQPSIA+VLGF+G KMILDYFGFH+ST
Sbjct: 280 RDPFVVFTSNLFAILGLRSLFLIISEGMSELKYLQPSIAIVLGFVGVKMILDYFGFHVST 339

Query: 360 EASLSFVATSLSAGVLLSLMKKSD 383
           EASL+FVA+SL+ GV+LSL  KSD
Sbjct: 340 EASLAFVASSLTIGVVLSLANKSD 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439789|ref|XP_002276398.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Vitis vinifera]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/396 (66%), Positives = 301/396 (76%), Gaps = 32/396 (8%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLL----------HFCNSQAPTFY 50
           IY GV+ P KFDS       TSTS      Q  K T+            HF     P   
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHF-----PPLS 54

Query: 51  SVSHNRRGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTS--HSPTTVDDAERQ 107
           +V +    + SPL AC++ T+Q ED LSTSE  R S+      N +  H+  +  + E  
Sbjct: 55  AVRNAGGARCSPL-ACSRRTQQGEDGLSTSEGERISAPYDGLSNVAVPHNCISAGNPEEI 113

Query: 108 IEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVL 167
            +G E+Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVL
Sbjct: 114 TQGPETYVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVL 173

Query: 168 IFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227
           IFKYF+VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFKLF
Sbjct: 174 IFKYFQVPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFKLF 233

Query: 228 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAF 287
           A++ED+TDLS+NF+VKTCQ+FIPVT  YDGN F T QDG+ KATPLLLTV VIELSDIAF
Sbjct: 234 AADEDETDLSNNFVVKTCQKFIPVTANYDGNLFVTIQDGVWKATPLLLTVVVIELSDIAF 293

Query: 288 AVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCK 347
           AVDSIPAVFGVTRDPFIVF+SNLFAILGLRSL+TLISE M++LEYLQPSI VVLGFIGCK
Sbjct: 294 AVDSIPAVFGVTRDPFIVFTSNLFAILGLRSLYTLISESMSELEYLQPSIGVVLGFIGCK 353

Query: 348 MILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD 383
           MI D+FGFH+STEASL FVATSL AGVLLSLMKKSD
Sbjct: 354 MISDFFGFHVSTEASLGFVATSLGAGVLLSLMKKSD 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548192|ref|XP_003542487.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/384 (67%), Positives = 300/384 (78%), Gaps = 33/384 (8%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV++  + AP                  P   S+LH   S   +F SV H R  + 
Sbjct: 1   MGLASVVH--IHAP------------------PFRCSVLHHPIS---SFCSVYHYRPPRR 37

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++    ++    SEV R S+Q +++      SPT      ++  G E Y SSV+
Sbjct: 38  FPLL-CSRRIGHDN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEGYNSSVR 88

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 89  TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVTYQ 148

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL++IL+GTATLQRFEAVNL+LA ILL+SS KLFASEED++DLSDN
Sbjct: 149 NRVLSYGIAGAVVFRLTIILIGTATLQRFEAVNLLLAAILLYSSSKLFASEEDESDLSDN 208

Query: 240 FIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 299
           F+VKTCQ+FIPVTTYYDGNRF TN DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVT
Sbjct: 209 FVVKTCQKFIPVTTYYDGNRFITNLDGVWKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 268

Query: 300 RDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHIST 359
           RDPF+VF+SNLFAILGLRSLF +ISEGM++L+YLQPSIAVVLGFIG KMILDYFG H+ST
Sbjct: 269 RDPFVVFTSNLFAILGLRSLFLIISEGMSELKYLQPSIAVVLGFIGVKMILDYFGLHVST 328

Query: 360 EASLSFVATSLSAGVLLSLMKKSD 383
           EASL+FVA+SL+ GV+LSL+ KSD
Sbjct: 329 EASLAFVASSLTIGVVLSLVNKSD 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448697|ref|XP_004142102.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Cucumis sativus]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/390 (63%), Positives = 292/390 (74%), Gaps = 37/390 (9%)

Query: 3   LASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHF--------CNSQAPTFYSVSH 54
           +AS+I++G+Q   K DS             PK++S LHF         ++  P F  V  
Sbjct: 1   MASIIHNGLQISSKLDS-----------PWPKVSSHLHFHPRAWVEAVHNHVPQFSPVIL 49

Query: 55  NRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESY 114
           N R     L+ C+   E+E D ST+E  R+SS                     IEG ES 
Sbjct: 50  NCRPSPRSLVRCSSRIEREGDPSTAEANRTSS-----------------VRGTIEGSESK 92

Query: 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKV 174
            SS++ VA CV+TAVAFG+GVG  +G  KASEFFAGY+LEQSLSVDNLFVFVLIFKYFKV
Sbjct: 93  VSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKV 152

Query: 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS-EEDD 233
           P  YQNRVL+YGI+GAIVFRL++ILLG ATLQRFEAVNL+LA ILLFSSF+LFAS EEDD
Sbjct: 153 PTEYQNRVLTYGISGAIVFRLTIILLGAATLQRFEAVNLLLAAILLFSSFQLFASNEEDD 212

Query: 234 TDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIP 293
            DLSDNF+VKTCQ+ IPVT  YDG+RFFT Q+G++KATPLLLT+AVIELSDIAFAVDSIP
Sbjct: 213 GDLSDNFVVKTCQQLIPVTATYDGDRFFTLQEGVKKATPLLLTIAVIELSDIAFAVDSIP 272

Query: 294 AVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
           AVFGVTRDPFIV +SN FAILGLRSLF L+++GM++LEYLQPSI VVL FIG KMILD+F
Sbjct: 273 AVFGVTRDPFIVITSNFFAILGLRSLFILVADGMSELEYLQPSIGVVLAFIGSKMILDFF 332

Query: 354 GFHISTEASLSFVATSLSAGVLLSLMKKSD 383
           GFH+ TEASL FVA SLS GVLLSL+KK+D
Sbjct: 333 GFHVPTEASLGFVAISLSTGVLLSLLKKAD 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416778|ref|NP_568257.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana] gi|332004383|gb|AED91766.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/389 (66%), Positives = 299/389 (76%), Gaps = 15/389 (3%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIP 293
           TDLSDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIP
Sbjct: 233 TDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIP 292

Query: 294 AVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
           AVFGVTRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+F
Sbjct: 293 AVFGVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFF 352

Query: 354 GFHISTEASLSFVATSLSAGVLLSLMKKS 382
           GFHISTEASL  VA SLS GVLLSL  KS
Sbjct: 353 GFHISTEASLGVVALSLSTGVLLSLTNKS 381

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807259|ref|XP_002871513.1| PDE149 [Arabidopsis lyrata subsp. lyrata] gi|297317350|gb|EFH47772.1| PDE149 [Arabidopsis lyrata subsp. lyrata]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/384 (67%), Positives = 296/384 (77%), Gaps = 15/384 (3%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSH-NRRGQ 59
           M LASVI+ G+ AP K D + L         +P +             F  VS  NRR  
Sbjct: 1   MSLASVIHHGIFAPAKSDRIFL--------TIPVVPPDFRARGWTESRFSLVSAANRRLS 52

Query: 60  YSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTSSV 118
           + P +AC++  +QEDD  + E+       H+ND  + S ++VD       +  E+Y +S 
Sbjct: 53  HLPPIACSREIDQEDDKESREL-----LPHKNDENASSSSSVDSGGLNDYQQEETYKTSF 107

Query: 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMY 178
           KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP MY
Sbjct: 108 KTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPPMY 167

Query: 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSD 238
           QN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSD
Sbjct: 168 QNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSD 227

Query: 239 NFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGV 298
           NFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGV
Sbjct: 228 NFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVFGV 287

Query: 299 TRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHIS 358
           TRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+FGFH+S
Sbjct: 288 TRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGFKMILDFFGFHVS 347

Query: 359 TEASLSFVATSLSAGVLLSLMKKS 382
           TEASL  VA SL  GV+LSL  KS
Sbjct: 348 TEASLGVVALSLGTGVVLSLTNKS 371

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741505|emb|CBI32637.3| unnamed protein product [Vitis vinifera]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/394 (65%), Positives = 292/394 (74%), Gaps = 52/394 (13%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLL----------HFCNSQAPTFY 50
           IY GV+ P KFDS       TSTS      Q  K T+            HF     P   
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHF-----PPLS 54

Query: 51  SVSHNRRGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIE 109
           +V +    + SPL AC++ T+Q ED LSTS                       + E   +
Sbjct: 55  AVRNAGGARCSPL-ACSRRTQQGEDGLSTS----------------------GNPEEITQ 91

Query: 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIF 169
           G E+Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVLIF
Sbjct: 92  GPETYVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIF 151

Query: 170 KYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS 229
           KYF+VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFKLFA+
Sbjct: 152 KYFQVPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFKLFAA 211

Query: 230 EEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAV 289
           +ED+TDLS+NF+VKTCQ+FIPVT  YDGN F T QDG+ KATPLLLTV VIELSDIAFAV
Sbjct: 212 DEDETDLSNNFVVKTCQKFIPVTANYDGNLFVTIQDGVWKATPLLLTVVVIELSDIAFAV 271

Query: 290 DSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMI 349
           DSIPAVFGVTRDPFIVF+SNLFAILGLRSL+TLISE M++LEYLQPSI VVLGFIGCKMI
Sbjct: 272 DSIPAVFGVTRDPFIVFTSNLFAILGLRSLYTLISESMSELEYLQPSIGVVLGFIGCKMI 331

Query: 350 LDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD 383
            D+FGFH+STEASL FVATSL AGVLLSLMKKSD
Sbjct: 332 SDFFGFHVSTEASLGFVATSLGAGVLLSLMKKSD 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592518|gb|AAM64468.1| transmembrane transport protein-like protein [Arabidopsis thaliana]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/389 (66%), Positives = 298/389 (76%), Gaps = 15/389 (3%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIP 293
           TDLSDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIP
Sbjct: 233 TDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIP 292

Query: 294 AVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353
           AVFGVTRDPFI  +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+F
Sbjct: 293 AVFGVTRDPFIGLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFF 352

Query: 354 GFHISTEASLSFVATSLSAGVLLSLMKKS 382
           GFHISTEASL  VA SLS GVLLSL  KS
Sbjct: 353 GFHISTEASLGVVALSLSTGVLLSLTNKS 381

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759380|dbj|BAB10031.1| unnamed protein product [Arabidopsis thaliana]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/332 (73%), Positives = 275/332 (82%), Gaps = 8/332 (2%)

Query: 55  NRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEG 110
           NRR  + P +AC++G +QED+   S         H+ND  + +  +    +    +  + 
Sbjct: 14  NRRLSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQ 69

Query: 111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
            E+Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FK
Sbjct: 70  EETYKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFK 129

Query: 171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASE 230
           YFKVP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASE
Sbjct: 130 YFKVPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASE 189

Query: 231 EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVD 290
           EDDTDLSDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVD
Sbjct: 190 EDDTDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVD 249

Query: 291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 350
           SIPAVFGVTRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMIL
Sbjct: 250 SIPAVFGVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGVKMIL 309

Query: 351 DYFGFHISTEASLSFVATSLSAGVLLSLMKKS 382
           D+FGFHISTEASL  VA SLS GVLLSL  KS
Sbjct: 310 DFFGFHISTEASLGVVALSLSTGVLLSLTNKS 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
TAIR|locus:2177053	384	PDE149 "PIGMENT DEFECTIVE 149"	0.984	0.981	0.681	3.7e-126
UNIPROTKB|Q74CV1	314	GSU1570 "Membrane protein, Ter	0.697	0.850	0.428	2.1e-52
TIGR_CMR|GSU_1570	314	GSU_1570 "membrane protein, Te	0.697	0.850	0.428	2.1e-52
UNIPROTKB|Q74EV4	311	GSU0855 "Membrane protein, Ter	0.697	0.858	0.422	5.6e-52
TIGR_CMR|GSU_0855	311	GSU_0855 "membrane protein, Te	0.697	0.858	0.422	5.6e-52
UNIPROTKB|Q3ZA17	321	DET0184 "Membrane protein, Ter	0.657	0.785	0.387	3.8e-46
TIGR_CMR|DET_0184	321	DET_0184 "membrane protein, Te	0.657	0.785	0.387	3.8e-46
UNIPROTKB|P42601	321	alx "predicted membrane-bound	0.579	0.691	0.431	7.9e-46
UNIPROTKB|Q8EG61	325	SO_1747 "Tellurium ion resista	0.686	0.809	0.402	3.4e-45
TIGR_CMR|SO_1747	325	SO_1747 "membrane protein, put	0.686	0.809	0.402	3.4e-45

TAIR|locus:2177053 PDE149 "PIGMENT DEFECTIVE 149" [Arabidopsis thaliana (taxid:3702)]

 Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
 Identities = 263/386 (68%), Positives = 302/386 (78%)

Query:     1 MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
             M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct:     1 MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query:    58 GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTS 116
               + P +AC++G +QED+   S       ++ EN  TS S ++VD    +  +  E+Y +
Sbjct:    57 LSHLPPIACSRGIDQEDEEKESRE-LLPHKNDENATTSRSSSSVDSGGLKDYQQEETYKT 115

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP+
Sbjct:   116 SFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPL 175

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
             MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDL
Sbjct:   176 MYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDL 235

Query:   237 SDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVF 296
             SDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVF
Sbjct:   236 SDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVF 295

Query:   297 GVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFH 356
             GVTRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+FGFH
Sbjct:   296 GVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFFGFH 355

Query:   357 ISTEASLSFVATSLSAGVLLSLMKKS 382
             ISTEASL  VA SLS GVLLSL  KS
Sbjct:   356 ISTEASLGVVALSLSTGVLLSLTNKS 381

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|Q74CV1 GSU1570 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 116/271 (42%), Positives = 173/271 (63%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFA 288
             SEE D D   N +V+  ++ +P+T    G+ FFT + G+  A+PL + + V+E SD+ FA
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKIRGDWFFTRRLGLWVASPLFMVLLVVESSDLVFA 208

Query:   289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKM 348
             +DSIPA+F +T DPFIV +SN+FAI+GLR+L+ L++E M    YL+  I+ +L F+G KM
Sbjct:   209 LDSIPAIFAITLDPFIVLTSNVFAIMGLRALYFLLAEVMGMFAYLKYGISFILAFVGIKM 268

Query:   349 ILDYFGFHISTEASLSFVATSLSAGVLLSLM 379
             IL   G HI    SL  +  SL   + LSL+
Sbjct:   269 ILIMLGVHIPIAISLGVIVLSLVVAMGLSLL 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1570 GSU_1570 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 116/271 (42%), Positives = 173/271 (63%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFA 288
             SEE D D   N +V+  ++ +P+T    G+ FFT + G+  A+PL + + V+E SD+ FA
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKIRGDWFFTRRLGLWVASPLFMVLLVVESSDLVFA 208

Query:   289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKM 348
             +DSIPA+F +T DPFIV +SN+FAI+GLR+L+ L++E M    YL+  I+ +L F+G KM
Sbjct:   209 LDSIPAIFAITLDPFIVLTSNVFAIMGLRALYFLLAEVMGMFAYLKYGISFILAFVGIKM 268

Query:   349 ILDYFGFHISTEASLSFVATSLSAGVLLSLM 379
             IL   G HI    SL  +  SL   + LSL+
Sbjct:   269 ILIMLGVHIPIAISLGVIVLSLVVAMGLSLL 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q74EV4 GSU0855 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 115/272 (42%), Positives = 175/272 (64%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIA 286
                 E+  +   N IV+  ++ +P+T     +RFF  + G+R ATPL L + ++E SD+ 
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRIRDDRFFIKKGGVRAATPLFLALVMVESSDLI 207

Query:   287 FAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGC 346
             FAVDSIPAV  V+RDPFIV++SN+FAI+GLRSL+ L++  M    YL+  ++V+L ++G 
Sbjct:   208 FAVDSIPAVLAVSRDPFIVYTSNVFAIMGLRSLYYLLANVMEMFVYLKLGVSVILAYVGV 267

Query:   347 KMILDYFGFHISTEASLSFVATSLSAGVLLSL 378
             KM+L    +HI    SL  +   L+  +L S+
Sbjct:   268 KMLLVDI-YHIPIIFSLGTIVGVLAISILTSV 298

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0855 GSU_0855 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 115/272 (42%), Positives = 175/272 (64%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIA 286
                 E+  +   N IV+  ++ +P+T     +RFF  + G+R ATPL L + ++E SD+ 
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRIRDDRFFIKKGGVRAATPLFLALVMVESSDLI 207

Query:   287 FAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGC 346
             FAVDSIPAV  V+RDPFIV++SN+FAI+GLRSL+ L++  M    YL+  ++V+L ++G 
Sbjct:   208 FAVDSIPAVLAVSRDPFIVYTSNVFAIMGLRSLYYLLANVMEMFVYLKLGVSVILAYVGV 267

Query:   347 KMILDYFGFHISTEASLSFVATSLSAGVLLSL 378
             KM+L    +HI    SL  +   L+  +L S+
Sbjct:   268 KMLLVDI-YHIPIIFSLGTIVGVLAISILTSV 298

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q3ZA17 DET0184 "Membrane protein, TerC family" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 98/253 (38%), Positives = 150/253 (59%)

Query:   128 AVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI 187
             A+ FG  + F  G+     + +GYI+E SLSVDNLFVF++IF YF +   YQ++VL +GI
Sbjct:    48 ALIFGGLIYFSMGSEFGLNYLSGYIIELSLSVDNLFVFIMIFSYFCIKREYQHKVLFWGI 107

Query:   188 AGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQR 247
              GAI+ R   I  G   ++    V  +    L+++  ++   +  +     N +V    R
Sbjct:   108 LGAIIMRAVFIAAGITLIENLSWVLYIFGAFLIYTGIRMVKDQNQEIHPDKNPLVNFVCR 167

Query:   248 FIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS 307
              +P+T    G+ FF  ++G + ATPL+L +  IE  D+ FA+DSIPAV  +T DPFIVF+
Sbjct:   168 ILPMTNKLHGDHFFIKENGRKLATPLILVLVTIEAMDLVFAIDSIPAVMAITLDPFIVFT 227

Query:   308 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVA 367
             SN+FA++GLR+++  +S  +  L YL   +A +L F+G KM++  F  H+    SLS VA
Sbjct:   228 SNIFAVMGLRAMYMALSGIIQKLHYLHYGLAAILSFLGIKMLISEF-VHLPVALSLSVVA 286

Query:   368 TSLSAGVLLSLMK 380
               L+  V  SL+K
Sbjct:   287 VILAVSVAASLLK 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0184 DET_0184 "membrane protein, TerC family" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 98/253 (38%), Positives = 150/253 (59%)

Query:   128 AVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI 187
             A+ FG  + F  G+     + +GYI+E SLSVDNLFVF++IF YF +   YQ++VL +GI
Sbjct:    48 ALIFGGLIYFSMGSEFGLNYLSGYIIELSLSVDNLFVFIMIFSYFCIKREYQHKVLFWGI 107

Query:   188 AGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQR 247
              GAI+ R   I  G   ++    V  +    L+++  ++   +  +     N +V    R
Sbjct:   108 LGAIIMRAVFIAAGITLIENLSWVLYIFGAFLIYTGIRMVKDQNQEIHPDKNPLVNFVCR 167

Query:   248 FIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS 307
              +P+T    G+ FF  ++G + ATPL+L +  IE  D+ FA+DSIPAV  +T DPFIVF+
Sbjct:   168 ILPMTNKLHGDHFFIKENGRKLATPLILVLVTIEAMDLVFAIDSIPAVMAITLDPFIVFT 227

Query:   308 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVA 367
             SN+FA++GLR+++  +S  +  L YL   +A +L F+G KM++  F  H+    SLS VA
Sbjct:   228 SNIFAVMGLRAMYMALSGIIQKLHYLHYGLAAILSFLGIKMLISEF-VHLPVALSLSVVA 286

Query:   368 TSLSAGVLLSLMK 380
               L+  V  SL+K
Sbjct:   287 VILAVSVAASLLK 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|P42601 alx "predicted membrane-bound redox modulator that is induced by high pH" [Escherichia coli K-12 (taxid:83333)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 97/225 (43%), Positives = 149/225 (66%)

Query:   143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
             +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct:    75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query:   203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
               + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct:   135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query:   263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
              ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct:   195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query:   323 ISEGMAD-LEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 366
             ++ G+A+    L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct:   255 LA-GVAERFSMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q8EG61 SO_1747 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 111/276 (40%), Positives = 168/276 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--MRK---ATPLLLTVAVIELSDIAFAVD 290
             + DN   K  +  +  T      +F+   +   + K   ATPL L + ++E +D+ FAVD
Sbjct:   165 IQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQLSKGWWATPLFLALILVETADLVFAVD 224

Query:   291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 350
             SIPA+F +T+DPFIV++SN+FAILGLR+L+  ++  +   EYL+ +++VVL FIG K+ L
Sbjct:   225 SIPAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRFEYLKYALSVVLVFIGVKVGL 284

Query:   351 DYFG------FHISTEASLSFVATSLSAGVLLSLMK 380
              YF       F I T  SL      L AGVL SL K
Sbjct:   285 VYFNHEGIVDFKIPTALSLGVTFGLLLAGVLFSLWK 320

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1747 SO_1747 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 111/276 (40%), Positives = 168/276 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--MRK---ATPLLLTVAVIELSDIAFAVD 290
             + DN   K  +  +  T      +F+   +   + K   ATPL L + ++E +D+ FAVD
Sbjct:   165 IQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQLSKGWWATPLFLALILVETADLVFAVD 224

Query:   291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 350
             SIPA+F +T+DPFIV++SN+FAILGLR+L+  ++  +   EYL+ +++VVL FIG K+ L
Sbjct:   225 SIPAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRFEYLKYALSVVLVFIGVKVGL 284

Query:   351 DYFG------FHISTEASLSFVATSLSAGVLLSLMK 380
              YF       F I T  SL      L AGVL SL K
Sbjct:   285 VYFNHEGIVDFKIPTALSLGVTFGLLLAGVLFSLWK 320

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.28.351.1 hypothetical protein (269 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	383
TIGR03718	302	TIGR03718, R_switched_Alx, integral membrane prote	1e-108
pfam03741	184	pfam03741, TerC, Integral membrane protein TerC fa	1e-57
COG0861	254	COG0861, TerC, Membrane protein TerC, possibly inv	7e-48
TIGR03716	215	TIGR03716, R_switched_YkoY, integral membrane prot	2e-16

>gnl|CDD|234327 TIGR03718, R_switched_Alx, integral membrane protein, TerC family

 Score =  319 bits (819), Expect = e-108
 Identities = 120/265 (45%), Positives = 172/265 (64%), Gaps = 1/265 (0%)

Query: 117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
           ++   A  VS A+ FG GV F  G   A EF  GY++E+SLSVDNLFVF+LIF YF VP 
Sbjct: 35  ALLWSAVWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPR 94

Query: 177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
            YQ+RVL +GI GA+V R   I  G A +++F  V  +    LL++  K+    +++ D 
Sbjct: 95  EYQHRVLFWGILGALVLRAIFIAAGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDP 154

Query: 237 SDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVF 296
            +N +V+  +R +PVT  Y G+RFF  ++G R ATPL L + ++E +D+ FAVDSIPA+F
Sbjct: 155 ENNPLVRLVRRVLPVTDKYHGDRFFVRENGKRYATPLFLVLVLVETTDLIFAVDSIPAIF 214

Query: 297 GVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFG-F 355
            VT+DPFIVF+SN+FAILGLR+L+ L++  +    YL+  +AV+L FIG KM+L     +
Sbjct: 215 AVTQDPFIVFTSNIFAILGLRALYFLLAGLLERFHYLKYGLAVILVFIGVKMLLHATDVY 274

Query: 356 HISTEASLSFVATSLSAGVLLSLMK 380
           HI    SL  +  +L+  ++ SL K
Sbjct: 275 HIPIGVSLGVIVGTLAVSIVASLWK 299

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader. Length = 302

>gnl|CDD|217707 pfam03741, TerC, Integral membrane protein TerC family

 Score =  185 bits (472), Expect = 1e-57
 Identities = 84/205 (40%), Positives = 124/205 (60%), Gaps = 21/205 (10%)

Query: 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207
              Y+LE SLSVDN FV  LIF+  K+P   Q + L +GI GA+V R+ LILLG+A L+ 
Sbjct: 1   LTLYLLEISLSVDNAFVIALIFR--KLPPEQQKKALFWGIIGALVLRIILILLGSALLEL 58

Query: 208 FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGM 267
           F+ + L+    LL+++ KL    E+D +  +N IV+  ++ +PVT+              
Sbjct: 59  FDWILLIGGAFLLYTAIKLLRENEEDDE--ENKIVRELKKVLPVTSSS------------ 104

Query: 268 RKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGM 327
                L L V  IEL+D+ F++DS+PA  G+T DPFIV + N+FAILGLR L  L+++ +
Sbjct: 105 -----LWLAVIQIELADLVFSLDSVPAAVGITDDPFIVITGNIFAILGLRFLAFLLAKLI 159

Query: 328 ADLEYLQPSIAVVLGFIGCKMILDY 352
               YL+   A +LGFIG K++L+ 
Sbjct: 160 ERFPYLKYLAAAILGFIGVKLLLEG 184

This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Length = 184

>gnl|CDD|223930 COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

 Score =  162 bits (413), Expect = 7e-48
 Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 17/240 (7%)

Query: 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205
                 +LE  L +DN  V  ++      P   + + L  G+AGA+V R+ L+   +  L
Sbjct: 19  ALLTLILLEIVLGIDNAIVIAILASKL--PPKQRKKALFIGLAGALVLRIILLASISWLL 76

Query: 206 QRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQD 265
              + +  +    LL+   KL          +             +    +G  FF N  
Sbjct: 77  TLTQPLLYIFGLYLLWRDIKLLLGGLFLLFKA----------TKELHERLEGEEFFVNGK 126

Query: 266 GMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISE 325
             +KATP    +  IEL+D+ F++DS+ A  G+   PF++ ++ +FAIL +R    L++ 
Sbjct: 127 L-KKATPFWGAIIQIELADLVFSLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLAR 185

Query: 326 GMADLEYLQPSIAVVLGFIGCKMIL---DYFGFHI-STEASLSFVATSLSAGVLLSLMKK 381
            +     L+    V+L FIG K+IL    +FGFHI      L+   + L   + +S  KK
Sbjct: 186 LLERHPTLKYLALVILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSVLIELLNISARKK 245

Length = 254

>gnl|CDD|234326 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 28/199 (14%)

Query: 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 211
           ILE  LS DN  V  ++ K+  +P   + + L YG+ GA VFR   + L +  L +F  +
Sbjct: 2   ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLAS-FLIKFWWI 58

Query: 212 NLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKAT 271
             + A  LL+ + K F  ++   +  +    K    F                       
Sbjct: 59  KAIGALYLLYLAIKHFRKKKKGKEDEEAEKKKAHSGFWR--------------------- 97

Query: 272 PLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLE 331
               TV  +EL DIAF+VDSI A   ++   ++VF   +  IL +R   T+  + +    
Sbjct: 98  ----TVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMRFAATIFVKLLERFP 153

Query: 332 YLQPSIAVVLGFIGCKMIL 350
            L+ +  +++G+IG K++L
Sbjct: 154 ELETAAFLLIGWIGVKLLL 172

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	100.0
COG0861	254	TerC Membrane protein TerC, possibly involved in t	100.0
PRK14013	338	hypothetical protein; Provisional	100.0
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	100.0
PF03741	183	TerC: Integral membrane protein TerC family; Inter	100.0
COG2899	346	Uncharacterized protein conserved in bacteria [Fun	100.0
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	100.0
PF04332	294	DUF475: Protein of unknown function (DUF475); Inte	100.0
COG1971	190	Predicted membrane protein [Function unknown]	97.45
PF01914	203	MarC: MarC family integral membrane protein; Inter	97.44
PRK11469	188	hypothetical protein; Provisional	97.3
PRK10739	197	putative antibiotic transporter; Provisional	97.21
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	97.18
PRK10995	221	inner membrane protein; Provisional	97.02
PF03741	183	TerC: Integral membrane protein TerC family; Inter	96.98
PRK11111	214	hypothetical protein; Provisional	96.97
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	96.84
COG0861	254	TerC Membrane protein TerC, possibly involved in t	96.67
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	96.43
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	96.23
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	96.17
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	96.05
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	95.74
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	95.49
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	95.45
COG2119	190	Predicted membrane protein [Function unknown]	95.28
PRK10958	212	leucine export protein LeuE; Provisional	94.96
PRK09304	207	arginine exporter protein; Provisional	94.88
PRK10229	206	threonine efflux system; Provisional	92.77
TIGR00948	177	2a75 L-lysine exporter.	92.51
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	92.18
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	89.49
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	89.4
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	88.78
COG4280	236	Predicted membrane protein [Function unknown]	82.84
COG1279	202	Lysine efflux permease [General function predictio	81.53
PRK11469	188	hypothetical protein; Provisional	80.99

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=100.00  E-value=2.1e-79  Score=597.82  Aligned_cols=274  Identities=45%  Similarity=0.760  Sum_probs=266.9

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHH
Q 016749          110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG  189 (383)
Q Consensus       110 ~~~~~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~g  189 (383)
                      .+.+.|||..||++|+++|++||+++|++.|++.+.||+|||++|++||+||++|+++++++|++|+++|||+|+||++|
T Consensus        28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g  107 (302)
T TIGR03718        28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG  107 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCccchhHHHHhhhcccccccccCCceEEeeCCccc
Q 016749          190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRK  269 (383)
Q Consensus       190 AvvmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~~~~~~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~  269 (383)
                      |++||++|+++|++++++|+|++|+||+||+|+|+|++++++||+|+++|+.+|++||++|++++|||++|+++++|++.
T Consensus       108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~  187 (302)
T TIGR03718       108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKRY  187 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCceeeeecCcee
Confidence            99999999999999999999999999999999999999987777777889999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh
Q 016749          270 ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMI  349 (383)
Q Consensus       270 aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMl  349 (383)
                      +||++.++++||++|++||+|||||++|+|+||++|++||+||++|+|++|+++++++||||||||+++.+|+|+|+||+
T Consensus       188 ~tpl~~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~L~~~~a~iL~fIGvkml  267 (302)
T TIGR03718       188 ATPLFLVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERFHYLKYGLAVILVFIGVKML  267 (302)
T ss_pred             cCcHHHHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccc-ccChhHHHHHHHHHHHHHHHHHhhccCC
Q 016749          350 LDYFGF-HISTEASLSFVATSLSAGVLLSLMKKSD  383 (383)
Q Consensus       350 l~~~~~-~IP~~~sl~vi~~il~~si~~Sl~~~~~  383 (383)
                      ++++|+ |||+++|++++++++++++++|++++||
T Consensus       268 l~~~~~~~ip~~~sl~vi~~~l~~~i~~Sl~~~~~  302 (302)
T TIGR03718       268 LHATDVYHIPIGVSLGVIVGILAVSIVASLWKTRK  302 (302)
T ss_pred             HhhcCcCCCChhHHHHHHHHHHHHHHHHHhcccCC
Confidence            998765 9999999999999999999999998875

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-51  Score=393.09  Aligned_cols=237  Identities=28%  Similarity=0.417  Sum_probs=207.3

Q ss_pred             HHHHHH--HhhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016749          131 FGLGVG--FIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF  208 (383)
Q Consensus       131 F~~~i~--~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f  208 (383)
                      |+...|  |...+..|.+++|++++|++||+||++|+++++++  +|++||||+++||+.+|+++|+++++.++++++.+
T Consensus         2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~   79 (254)
T COG0861           2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLT   79 (254)
T ss_pred             chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444  33456677899999999999999999999999997  89999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhccCCCCCccchhHHHHhhhcccccccccCCceEEeeCCcc-ccchHHHHHHHHHHHHHHh
Q 016749          209 EAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR-KATPLLLTVAVIELSDIAF  287 (383)
Q Consensus       209 ~~I~~igGafLL~~a~k~~~~~~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~-~aTpl~~~vl~IE~~DlvF  287 (383)
                      +|++++||.+|+|+++|++++.+++.       .|+.++..   ++++|++++.  +++. ..||+|.++.+||++|++|
T Consensus        80 ~~l~~~fg~~L~~~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~--~~~~~~~~~f~~ai~~I~i~D~vF  147 (254)
T COG0861          80 QPLLYIFGLYLLWRDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV--NGKLKKATPFWGAIIQIELADLVF  147 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHH-------HHHHHHHh---hhhccccccc--cccccccCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999875443       23444444   6788888876  4443 7899999999999999999


Q ss_pred             hcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhc---cccccChh-HHH
Q 016749          288 AVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY---FGFHISTE-ASL  363 (383)
Q Consensus       288 SlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~---~~~~IP~~-~sl  363 (383)
                      |+|||||++|+|+|++++++|+++|+++||++|+.+++++||||+++|+++.+|++||+||++++   .++|+|+. .++
T Consensus       148 SlDSV~Aa~g~~~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~IG~kli~~~~~~~~~~ip~~~~~~  227 (254)
T COG0861         148 SLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGVKLILEGLAHFGFHIPKGYLYL  227 (254)
T ss_pred             hhhHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHhhhccccccCCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998   56688755 566


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 016749          364 SFVATSLSAGVLLSLMKK  381 (383)
Q Consensus       364 ~vi~~il~~si~~Sl~~~  381 (383)
                      .+...+++..+..+..++
T Consensus       228 ~v~f~vl~~~~~~~~~~~  245 (254)
T COG0861         228 AVGFSVLIELLNISARKK  245 (254)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            666777777777777663

>PRK14013 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-50  Score=397.33  Aligned_cols=262  Identities=20%  Similarity=0.224  Sum_probs=219.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HH
Q 016749          115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF  193 (383)
Q Consensus       115 k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vm  193 (383)
                      .+.++||+.+++++++.+.++++   .+.....+++.++|++||+||++|||.+.++  +|++||||+|+||+++|+ +|
T Consensus         3 ~~~f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~~--m~~~wq~~fl~~Gi~iAvFgm   77 (338)
T PRK14013          3 LRYFRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLKR--MSPKWQKRFLTWGILIAVFGM   77 (338)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999877653   5666667889999999999999999999996  999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhccCCCCCccchhHHHHhhhcc
Q 016749          194 RLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFI  249 (383)
Q Consensus       194 R~ifI~~gv~Ll~~------------------------f~~I~~igGafLL~~a~k~~~~~~~e~d~~~~~i~~~~~k~~  249 (383)
                      |++|+++.+++.+.                        ++.+..+||+||++.++++++|+|+|.+|-. ++.+.++|.-
T Consensus        78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~Wl~-~iE~~~~~~g  156 (338)
T PRK14013         78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVHWLG-WIERPLAKLG  156 (338)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCccchh-HHHHHHHHhc
Confidence            99999999998764                        3468999999999999999999988888752 3333333322


Q ss_pred             ccc---------------ccccCC-----------------------ceE-Ee-e-CCccccchHHHHHHHHHHHHHHhh
Q 016749          250 PVT---------------TYYDGN-----------------------RFF-TN-Q-DGMRKATPLLLTVAVIELSDIAFA  288 (383)
Q Consensus       250 pv~---------------~~~~g~-----------------------~Ff-~~-~-~G~~~aTpl~~~vl~IE~~DlvFS  288 (383)
                      ++.               ...+.+                       +++ .. + ..+...+..+..++++|++|++||
T Consensus       157 ~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~a~~~G~~~y~~v~~~~~~~~~~~~~~~~~~~k~g~~~fl~lE~~D~~FS  236 (338)
T PRK14013        157 KLDGISVIVALVLLLIFSLLLPADEALTVLIAGLLGLLTYLIVEGLGGLFEEEEEDAMTAVGKAGLGGFLYLEVLDASFS  236 (338)
T ss_pred             CccchHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            211               000000                       000 00 0 112244678899999999999999


Q ss_pred             cccHHHHHHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhccccccChhHHHHHH
Q 016749          289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV  366 (383)
Q Consensus       289 lDSVpAafAIT~d~fIV~~g~ifaIlgLRsl--yf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~~~~IP~~~sl~vi  366 (383)
                      +|||||+||+|+|+++|++||++|++++|++  |++..+.++||+||||+++++++++|+||+++ .++|||++++++++
T Consensus       237 ~DsV~aafAiT~d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~lgvkmll~-~~~~IPe~vs~~i~  315 (338)
T PRK14013        237 FDGVIGAFAITNDIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLS-IGVHIPEVITGLIG  315 (338)
T ss_pred             hccchhheeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHHHHHHHHh-cCcCCcHHHHHHHH
Confidence            9999999999999999999999999999999  99999999999999999999999999999998 45899999999999


Q ss_pred             HHHHHHHHHHHhhccCC
Q 016749          367 ATSLSAGVLLSLMKKSD  383 (383)
Q Consensus       367 ~~il~~si~~Sl~~~~~  383 (383)
                      +.+++.++++|++++|+
T Consensus       316 ~~~i~~si~~S~~~~r~  332 (338)
T PRK14013        316 VALIGLAFWSSIRYNRR  332 (338)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999987764

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=100.00  E-value=1.7e-48  Score=365.69  Aligned_cols=200  Identities=27%  Similarity=0.405  Sum_probs=175.4

Q ss_pred             HHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccC
Q 016749          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE  231 (383)
Q Consensus       152 lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~~~~~~  231 (383)
                      ++|++||+||++|+++++++  +|+++|||+++||++||+++|++|+++++++++ ++|++++||+||+|+|+|++++++
T Consensus         2 ~lE~vLS~DN~~via~~~~~--LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k~l~~~~   78 (215)
T TIGR03716         2 ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIKHFRKKK   78 (215)
T ss_pred             chhHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            68999999999999999995  999999999999999999999999999999995 679999999999999999999765


Q ss_pred             CCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhcCCchhHHHHHHH
Q 016749          232 DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLF  311 (383)
Q Consensus       232 ~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~d~fIV~~g~if  311 (383)
                      ++++.+++.                         .+...+.++.++.+||++|++||+|||||++|+|+|++++++||++
T Consensus        79 ~~~~~~~~~-------------------------~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~  133 (215)
T TIGR03716        79 KGKEDEEAE-------------------------KKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGII  133 (215)
T ss_pred             ccccccccc-------------------------cccccchHHHHHHHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHH
Confidence            443322211                         0011245789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh--------ccccccChh-----HHHHHHHHHHHHHHHHHh
Q 016749          312 AILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD--------YFGFHISTE-----ASLSFVATSLSAGVLLSL  378 (383)
Q Consensus       312 aIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~--------~~~~~IP~~-----~sl~vi~~il~~si~~Sl  378 (383)
                      |+++||++|+.+++++||||++||+++.+|+++|+||+++        ..|+|+|+.     ....+++.++.++.+.|.
T Consensus       134 sIl~lr~~s~~l~~li~r~p~L~~~~~~iL~~ig~kLil~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~~~~~~  213 (215)
T TIGR03716       134 GILIMRFAATIFVKLLERFPELETAAFLLIGWIGVKLLLETLAHPSIPILHIEFPHSALWKLIFWGVLVAIAVVGWILSY  213 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999995        345777776     777788888877766664


Q ss_pred             h
Q 016749          379 M  379 (383)
Q Consensus       379 ~  379 (383)
                      +
T Consensus       214 ~  214 (215)
T TIGR03716       214 R  214 (215)
T ss_pred             c
Confidence            3

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=100.00  E-value=7.5e-48  Score=353.19  Aligned_cols=183  Identities=38%  Similarity=0.604  Sum_probs=164.7

Q ss_pred             HHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 016749          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF  227 (383)
Q Consensus       148 lt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~~  227 (383)
                      +|++++|++||+||++|+++++++  +|+++|+|+++||+.+|+++|++|+++++++++.++|++++||+||+|+|+|++
T Consensus         1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~   78 (183)
T PF03741_consen    1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL   78 (183)
T ss_pred             CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999997  999999999999999999999999999999998889999999999999999999


Q ss_pred             hccCCCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhcCCchhHHH
Q 016749          228 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS  307 (383)
Q Consensus       228 ~~~~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~d~fIV~~  307 (383)
                      ++++ ++|+ ++...++.++..|.                 ....+|.++++||++|++||+|||||++|+|+|++++++
T Consensus        79 ~~~~-~~d~-~~~~~~~~~~~~~~-----------------~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~~~~iv~~  139 (183)
T PF03741_consen   79 HEER-DEDP-ENAEVEEEKKFFPV-----------------SKSSLWLAVIQIELADLVFSLDSVLAAVGITDDFFIVIT  139 (183)
T ss_pred             Hhcc-cccc-chhhhhhhhccccc-----------------hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence            9876 3333 44444433332222                 123599999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q 016749          308 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD  351 (383)
Q Consensus       308 g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~  351 (383)
                      |+++|+++||++|+.+++++||||+++++++.+|+++|+||+++
T Consensus       140 g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig~~li~~  183 (183)
T PF03741_consen  140 GNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIGVKLILE  183 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999875

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=1.1e-42  Score=333.99  Aligned_cols=268  Identities=21%  Similarity=0.251  Sum_probs=219.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHH-H--HHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHH
Q 016749          113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFF-A--GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG  189 (383)
Q Consensus       113 ~~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~efl-t--~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~g  189 (383)
                      +..+.++||+..+.+|++.++|.+|..|...+..++ +  +.++|+|||.||++|+|-+.+.  |.+.||||+|+|||++
T Consensus         2 ~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIlI   79 (346)
T COG2899           2 TAFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGILI   79 (346)
T ss_pred             chHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHHH
Confidence            457789999999999999999998877665555443 3  4789999999999999999997  8999999999999999


Q ss_pred             HH-HHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhccCCCCCccchhHHHH
Q 016749          190 AI-VFRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKT  244 (383)
Q Consensus       190 Av-vmR~ifI~~gv~Ll~~------------------------f~~I~~igGafLL~~a~k~~~~~~~e~d~~~~~i~~~  244 (383)
                      |+ +||++|++++++.-+.                        ++.|..+||.||++.++++++|.|+|.+|-+ |+.+-
T Consensus        80 AVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~hWl~-~iE~~  158 (346)
T COG2899          80 AVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVHWLK-WIERP  158 (346)
T ss_pred             HHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccchhhh-hHHHH
Confidence            98 8999999999987654                        4568999999999999999999888777642 22222


Q ss_pred             hhhccccc---------------c--cccCC--ceEEe-----------e--CC---------ccccchHHHHHHHHHHH
Q 016749          245 CQRFIPVT---------------T--YYDGN--RFFTN-----------Q--DG---------MRKATPLLLTVAVIELS  283 (383)
Q Consensus       245 ~~k~~pv~---------------~--~~~g~--~Ff~~-----------~--~G---------~~~aTpl~~~vl~IE~~  283 (383)
                      +.|+=++.               .  ..+.+  .++.-           +  +|         ....+..+..++|+|+.
T Consensus       159 ~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVL  238 (346)
T COG2899         159 LARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVL  238 (346)
T ss_pred             HHHhcCCCCchhHHHHHHHHHHHHHhcCccccceehHHHHHHHHHHHHHHHhhhHhhcCHHHHhhhhhcchhHHHHHHHH
Confidence            22211110               0  11221  22210           0  11         11234578999999999


Q ss_pred             HHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhccccccChhH
Q 016749          284 DIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEA  361 (383)
Q Consensus       284 DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRsl--yf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~~~~IP~~~  361 (383)
                      |.+||+|+|+++||+|+||+|+..|+.+|.+.+||+  |-+-.+.+++|+|||||+.+.++.+++.|+++.--+|||+++
T Consensus       239 DAsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~~~~hIpEvv  318 (346)
T COG2899         239 DASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLSTDRFHIPEVV  318 (346)
T ss_pred             hhhccccceeeeeeeccCchhheeccchhheeeeeeEEEEEecCcHHHHHHHhcchHHHHHHHHHHHHHhhhheehHHHH
Confidence            999999999999999999999999999999999999  555569999999999999999999999999987348999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCC
Q 016749          362 SLSFVATSLSAGVLLSLMKKSD  383 (383)
Q Consensus       362 sl~vi~~il~~si~~Sl~~~~~  383 (383)
                      +..+.+..+++++.+|+++|||
T Consensus       319 TgL~Ga~fIgls~~sSv~~Nr~  340 (346)
T COG2899         319 TGLVGAVFIGLSLWSSVRYNRR  340 (346)
T ss_pred             HHhhHHHHHHHHHHHHHHHhHh
Confidence            9999999999999999998875

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=100.00  E-value=9.1e-41  Score=304.83  Aligned_cols=174  Identities=24%  Similarity=0.323  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 016749          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL  226 (383)
Q Consensus       147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~  226 (383)
                      +++..++|.+||+||++|++++.+  ++|+++|||++.||+++|+++|.+|+++|.++++ ++|+++.||++|+|+|+||
T Consensus         2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m   78 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL   78 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999877  5999999999999999999999999999999996 7999999999999999999


Q ss_pred             hhccCCCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhcC-CchhH
Q 016749          227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTR-DPFIV  305 (383)
Q Consensus       227 ~~~~~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~-d~fIV  305 (383)
                      +++++++++.++                             ...+|+|.++++||++|++||+|||||++|+|+ |++++
T Consensus        79 l~~~~~~~~~~~-----------------------------~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~~~~li  129 (176)
T TIGR03717        79 LLEEEEEQGGDV-----------------------------KGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHGHLGLL  129 (176)
T ss_pred             Hhcccccccccc-----------------------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            987644333211                             114789999999999999999999999999997 67899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhc
Q 016749          306 FSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY  352 (383)
Q Consensus       306 ~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~  352 (383)
                      ++|.++|++.||+.+..+.++++|||++||+++.+|+|+|+||++++
T Consensus       130 ~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~~d  176 (176)
T TIGR03717       130 IFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIVTD  176 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999753

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains

Probab=100.00  E-value=2.6e-38  Score=305.77  Aligned_cols=221  Identities=19%  Similarity=0.281  Sum_probs=183.7

Q ss_pred             hhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh------------------------hhHHHH
Q 016749          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR------------------------FEAVNL  213 (383)
Q Consensus       159 vDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~------------------------f~~I~~  213 (383)
                      .||++|||.+.+.  +.+.||||+|+|||++|+ +||++|+++++++.+.                        ++.+..
T Consensus         1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa   78 (294)
T PF04332_consen    1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA   78 (294)
T ss_pred             CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence            5999999999996  899999999999999998 8999999999997764                        456899


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCccchhHHHHhhhccccc---------------cccc--CC---ceEE-----------
Q 016749          214 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVT---------------TYYD--GN---RFFT-----------  262 (383)
Q Consensus       214 igGafLL~~a~k~~~~~~~e~d~~~~~i~~~~~k~~pv~---------------~~~~--g~---~Ff~-----------  262 (383)
                      +||+||++.+++++++++| .+|-. ++.|.+.|.-++.               ..+.  .+   .+..           
T Consensus        79 FGG~FLlmvfL~f~f~~~k-~~Wl~-~iE~~l~~~g~~~~~~~~v~l~~l~~~~~~l~~~~~~~~~~l~agi~G~~~f~~  156 (294)
T PF04332_consen   79 FGGMFLLMVFLDFFFDEEK-VHWLR-WIERPLAKLGKLDAISVVVALLALLIIAVFLAASADEAPTVLLAGILGLVTFLI  156 (294)
T ss_pred             HhHHHHHHHHHheeecCCc-ceeeh-HHHHHHHHcCCcccchhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Confidence            9999999999999999877 66531 2223222221110               0010  00   0110           


Q ss_pred             ---------eeCC-----ccccchHHHHHHHHHHHHHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH--HH
Q 016749          263 ---------NQDG-----MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLIS--EG  326 (383)
Q Consensus       263 ---------~~~G-----~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~--~l  326 (383)
                               .+++     ....+..+..++|+|+.|++||+|+|++|||+|+|++|+.+|+.+|++.+|++.-.+.  +.
T Consensus       157 v~~l~~~~e~~~~~~~~~~~~~k~g~~~FlYLEVLDASFSfDGVIGAFAiT~~i~iI~iGLgIGAmfVRSlTi~lV~kgt  236 (294)
T PF04332_consen  157 VNGLGSLFEAEEEPTAAAVAVGKAGLSGFLYLEVLDASFSFDGVIGAFAITNNIFIIAIGLGIGAMFVRSLTIYLVEKGT  236 (294)
T ss_pred             HHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhhhccccceeehhhhhcchHHHHHhcccceeeeeeeeEEeEecCc
Confidence                     1111     1245678999999999999999999999999999999999999999999999976666  79


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHhhccCC
Q 016749          327 MADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD  383 (383)
Q Consensus       327 l~rf~yL~~ga~~iL~fIGvkMll~~~~~~IP~~~sl~vi~~il~~si~~Sl~~~~~  383 (383)
                      +++|+|||||+++.++.+|+.|+++.+|+|||++++..+.++.++.+++.|++++||
T Consensus       237 L~~Y~YLEhGA~yAIg~La~IMll~~~~~~iPE~vTglig~~~Ig~a~~sSi~~~r~  293 (294)
T PF04332_consen  237 LSEYRYLEHGAHYAIGALAVIMLLSIFGFHIPEVVTGLIGVVFIGLAFWSSIRYNRR  293 (294)
T ss_pred             HHHhHHHhcchHHHHHHHHHHHHHHhhcccchHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999999999886

>COG1971 Predicted membrane protein [Function unknown]

Probab=97.45  E-value=0.017  Score=54.36  Aligned_cols=171  Identities=16%  Similarity=0.197  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHhchhHHHHHH-HHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHH
Q 016749          146 EFFAGYILEQSLSVDNLFVFV-LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGIL  219 (383)
Q Consensus       146 eflt~~lLE~sLSvDNafV~a-lIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f-----~~I~~igGafL  219 (383)
                      ++++..++-..+|.||--|=. .=.+.  .+++. +..|..|+...+ +-++++++|..+=..+     .|-.+++++.|
T Consensus         2 ~~~sllllA~alsmDAFav~l~~G~~~--~k~~~-~~~L~ia~~fG~-f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL   77 (190)
T COG1971           2 NIISLLLLAIALSMDAFAVSLGKGLAK--HKIRF-KEALVIALIFGV-FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLL   77 (190)
T ss_pred             cHHHHHHHHHHHhhHHHHHHHHhhhhh--ccccH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788899999999965532 22222  22222 345555544443 5667777776543322     35677899999


Q ss_pred             HHHHHHhhhcc--CCCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHH
Q 016749          220 LFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFG  297 (383)
Q Consensus       220 L~~a~k~~~~~--~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafA  297 (383)
                      .+.|.||+.+.  +||++..+|+                ++       +.     +  -.....++-++-|+|+.+.-++
T Consensus        78 ~~lG~~mI~e~f~~~~~~~~~~~----------------~~-------~~-----~--~~~~~~~laiatSidal~vG~~  127 (190)
T COG1971          78 IILGLKMIIEGFKNEEDEFVDPA----------------EK-------HD-----L--NFKELILLAIATSIDALAVGVG  127 (190)
T ss_pred             HHHHHHHHHHHhchhhcchhccc----------------cc-------ch-----h--hHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999854  1222211110                00       00     0  0222335566779999887777


Q ss_pred             hcCCch-hHHHHHHHH-------HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhcc
Q 016749          298 VTRDPF-IVFSSNLFA-------ILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF  353 (383)
Q Consensus       298 IT~d~f-IV~~g~ifa-------IlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~  353 (383)
                      .+.-.. +..+...++       .+|.--. ..+.++..+  |-|..+..+|..+|.|++.+..
T Consensus       128 ~a~lgv~i~~~av~iG~~T~il~~~G~~IG-~~~g~~~g~--~ae~lgGiiLI~~G~~iL~~~~  188 (190)
T COG1971         128 LAFLGVNILLAAVAIGLITLILSALGAIIG-RKLGKFLGK--YAEILGGIILIGIGVKILLEHL  188 (190)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhc
Confidence            664222 222222332       2222222 233344443  6688899999999999999865

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=97.44  E-value=0.015  Score=54.73  Aligned_cols=72  Identities=17%  Similarity=0.241  Sum_probs=63.2

Q ss_pred             chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhccC
Q 016749          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASEE  231 (383)
Q Consensus       158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~~  231 (383)
                      -..|+-++.-..+.  .++++|+|...-..+.|.+.=.+|.++|-.+++.|    +-....||+.|+..|++|+.++.
T Consensus        17 P~g~ip~f~~lt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~   92 (203)
T PF01914_consen   17 PIGNIPIFLSLTKG--MSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP   92 (203)
T ss_pred             HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            46788889888885  79999999999999999999999999999999765    45889999999999999998654

These proteins may be transporters. ; GO: 0016021 integral to membrane

>PRK11469 hypothetical protein; Provisional

Probab=97.30  E-value=0.03  Score=52.27  Aligned_cols=169  Identities=15%  Similarity=0.107  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHhh-hHHHHHHHHHHHH
Q 016749          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG----TATLQRF-EAVNLVLAGILLF  221 (383)
Q Consensus       147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~g----v~Ll~~f-~~I~~igGafLL~  221 (383)
                      +++..++=.+||.||..|=...=..  .++...++.+...+..+. +-.+++++|    ..+.+.. ++-..+++..|++
T Consensus         3 ~~~i~llaialsmDaF~v~ia~G~~--~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~   79 (188)
T PRK11469          3 ITATVLLAFGMSMDAFAASIGKGAT--LHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIF   79 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc--ccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888999999997764432211  233333444444443332 344555543    3332221 2345788889999


Q ss_pred             HHHHhhhcc--CCCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhc
Q 016749          222 SSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT  299 (383)
Q Consensus       222 ~a~k~~~~~--~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT  299 (383)
                      .|.+|+++.  ++++++++.                +.+            +.    .......=++-|+|+..+-++.+
T Consensus        80 lG~~mi~e~~~~~~~~~~~~----------------~~~------------~~----~~~~l~LaiAtSiDAlavGi~~~  127 (188)
T PRK11469         80 LGGRMIIEGFRGADDEDEEP----------------RRR------------HG----FWLLVTTAIATSLDAMAVGVGLA  127 (188)
T ss_pred             HHHHHHHHHHhccccccccc----------------ccC------------CC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998864  111111100                000            00    11122334567999887766553


Q ss_pred             --CC-ch-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhcc
Q 016749          300 --RD-PF-----IVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF  353 (383)
Q Consensus       300 --~d-~f-----IV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~  353 (383)
                        +- ++     +-.++.++...|++... .+.+...|  +.+....++|..+|+|++++..
T Consensus       128 ~~g~~~~~~~~~ig~~s~~~~~~G~~lG~-~~g~~~g~--~a~~lgG~iLI~iGi~il~~h~  186 (188)
T PRK11469        128 FLQVNIIATALAIGCATLIMSTLGMMVGR-FIGSIIGK--KAEILGGLVLIGIGVQILWTHF  186 (188)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence              32 22     11223333444444443 33345555  4677999999999999999754

>PRK10739 putative antibiotic transporter; Provisional

Probab=97.21  E-value=0.064  Score=50.55  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             HhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhccC
Q 016749          156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASEE  231 (383)
Q Consensus       156 sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~~  231 (383)
                      .=-+.|+-+|..+.+.  .++++|||...-..+.|.+.=.+|.+.|..+++.|    +-....||+.|+..|++|+++++
T Consensus        15 inPig~ipiflslt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~~   92 (197)
T PRK10739         15 MDPLGNLPIFMSVLKH--LEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPSA   92 (197)
T ss_pred             HhHhhHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3346788899998886  79999999998888888888889999999999765    45889999999999999997653

>TIGR00427 membrane protein, MarC family

Probab=97.18  E-value=0.058  Score=50.78  Aligned_cols=74  Identities=15%  Similarity=0.321  Sum_probs=63.8

Q ss_pred             HHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhcc
Q 016749          155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (383)
Q Consensus       155 ~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~  230 (383)
                      ..=-+.|+-+|..+.+.  .++++|+|......+.|.+.=.+|.+.|-.+++.|    +-....||+.|+.+|++|+..+
T Consensus        17 iinPig~ipvfl~lt~~--~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~   94 (201)
T TIGR00427        17 IINPIGNIPIFISLTEY--YTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE   94 (201)
T ss_pred             HhCcchHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34456789999999986  79999999999999999988889999999999764    4588999999999999999764

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PRK10995 inner membrane protein; Provisional

Probab=97.02  E-value=0.066  Score=50.86  Aligned_cols=71  Identities=11%  Similarity=0.181  Sum_probs=61.7

Q ss_pred             chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhcc
Q 016749          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (383)
Q Consensus       158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~  230 (383)
                      =+.|+-+|..+.+.  .++++|||.-....+.|.+.=.++.+.|..+++-|    +.....||++|++.|++|++++
T Consensus        21 P~g~~pif~~lt~~--~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~   95 (221)
T PRK10995         21 PLTTVALFLGLSGN--MTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ   95 (221)
T ss_pred             hhhhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45688888888886  79999999999999999888889999999999764    5789999999999999999764

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=96.98  E-value=0.0086  Score=55.63  Aligned_cols=74  Identities=24%  Similarity=0.275  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016749          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (383)
Q Consensus       147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k  225 (383)
                      ..+..+.+.+.|+||+.....+.+        +--.+..|...|+ +||...-.+.. ++++++++.+.++++|.|+|.|
T Consensus       109 v~~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~~~-~l~~~p~l~~~~~~~L~~ig~~  179 (183)
T PF03741_consen  109 VIQIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLLAK-LLERFPYLKYLAAAILGFIGVK  179 (183)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            455678899999999998888773        3468888999997 78887666655 6789999999999999999999


Q ss_pred             hhhc
Q 016749          226 LFAS  229 (383)
Q Consensus       226 ~~~~  229 (383)
                      ++.+
T Consensus       180 li~~  183 (183)
T PF03741_consen  180 LILE  183 (183)
T ss_pred             HhhC
Confidence            9753

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>PRK11111 hypothetical protein; Provisional

Probab=96.97  E-value=0.12  Score=49.15  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhcc
Q 016749          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (383)
Q Consensus       158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~  230 (383)
                      =+.|+-+|..+.+.  .++++|+|......+.|.+.=.+|.+.|-++++-|    +-....||+.|+.+|++|+..+
T Consensus        23 Pig~ipiflslt~~--~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~   97 (214)
T PRK11111         23 PVGILPVFISMTSH--QTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK   97 (214)
T ss_pred             cchhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            35688888888886  79999999999999999888889999999999764    4578999999999999999754

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=96.84  E-value=0.072  Score=50.54  Aligned_cols=77  Identities=22%  Similarity=0.282  Sum_probs=66.2

Q ss_pred             HHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhh
Q 016749          153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFA  228 (383)
Q Consensus       153 LE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~  228 (383)
                      .=.+=...|+-++..+.+.  +|+++|+|+..-..+.|...=.+|.+.|.++++-|    +-....||..|.+.|++|+.
T Consensus        15 f~i~dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~   92 (203)
T COG2095          15 FAIIDPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLF   92 (203)
T ss_pred             HHHhCCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhc
Confidence            3345568899999999996  89999999999999999988899999999999754    34788999999999999998


Q ss_pred             ccC
Q 016749          229 SEE  231 (383)
Q Consensus       229 ~~~  231 (383)
                      .+.
T Consensus        93 ~~~   95 (203)
T COG2095          93 GPT   95 (203)
T ss_pred             CCc
Confidence            764

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=96.67  E-value=0.031  Score=54.71  Aligned_cols=75  Identities=24%  Similarity=0.270  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016749          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (383)
Q Consensus       147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k  225 (383)
                      ..+..+++.+-|.||+....-+.++        .-++..|...|+ +||...-.+.. ++++++++.+.+.++|+|+|.|
T Consensus       137 i~~I~i~D~vFSlDSV~Aa~g~~~~--------~~im~~a~i~aI~~m~~aa~~l~~-ll~r~p~l~~~~~~iL~~IG~k  207 (254)
T COG0861         137 IIQIELADLVFSLDSVIAAVGMAGH--------PFVMVTAVIFAILVMRFAAFLLAR-LLERHPTLKYLALVILLFIGVK  207 (254)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHHHHHH-HHHHchHHHHHHHHHHHHHHHH
Confidence            3345788999999999988887754        368999999998 88887655554 7899999999999999999999


Q ss_pred             hhhcc
Q 016749          226 LFASE  230 (383)
Q Consensus       226 ~~~~~  230 (383)
                      ++.++
T Consensus       208 li~~~  212 (254)
T COG0861         208 LILEG  212 (254)
T ss_pred             HHHhh
Confidence            99876

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=96.43  E-value=0.032  Score=53.39  Aligned_cols=75  Identities=19%  Similarity=0.258  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016749          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (383)
Q Consensus       147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k  225 (383)
                      ..+..+.+.+.|+||+.....+.+        ..-.+..|...++ +||..--.+ +.++++|+++.+.+.++|.|+|.|
T Consensus        99 v~~I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~k  169 (215)
T TIGR03716        99 VLKVELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGVK  169 (215)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678899999999998887754        2357888888887 788876666 457899999999999999999999


Q ss_pred             hhhcc
Q 016749          226 LFASE  230 (383)
Q Consensus       226 ~~~~~  230 (383)
                      ++.+.
T Consensus       170 Lil~~  174 (215)
T TIGR03716       170 LLLET  174 (215)
T ss_pred             HHHHH
Confidence            99865

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=96.23  E-value=0.98  Score=41.69  Aligned_cols=85  Identities=12%  Similarity=0.090  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHH-HHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHH
Q 016749          142 SKASEFFAGYIL-EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVL  215 (383)
Q Consensus       142 ~~a~eflt~~lL-E~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv-~Ll~~f~~----I~~ig  215 (383)
                      |....|+...++ =.+=+-||+.+...-.++ +   ..+--....|+..+...=......|. .+++.++|    ++++|
T Consensus         4 ~~~~~f~~~~~~~~~sPGP~~~~v~~~~~~~-G---~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~G   79 (195)
T PRK10323          4 TLLSAFWTYTLITAMTPGPNNILALSSATSH-G---FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAG   79 (195)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445444332 233378999999887764 1   12222456677777655455555555 55655554    78999


Q ss_pred             HHHHHHHHHHhhhcc
Q 016749          216 AGILLFSSFKLFASE  230 (383)
Q Consensus       216 GafLL~~a~k~~~~~  230 (383)
                      ++||+|.|+|+++.+
T Consensus        80 a~YLlyLg~~~~~s~   94 (195)
T PRK10323         80 AAYIVWLAWKIATSP   94 (195)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999999864

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=96.17  E-value=0.08  Score=48.98  Aligned_cols=75  Identities=21%  Similarity=0.250  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhhcccHHHHHHhcCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh
Q 016749          277 VAVIELSDIAFAVDSIPAVFGVTRDP------FIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL  350 (383)
Q Consensus       277 vl~IE~~DlvFSlDSVpAafAIT~d~------fIV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll  350 (383)
                      ++++.+.|++.|+||+......|++.      -+...|.+.| ..+|...-.+...+=++|.+++++..+|.++|.||+.
T Consensus         2 ~~~li~le~vLs~DN~~vi~~~t~~lp~~~r~~~~~~G~~~A-~vlr~if~~~G~~ll~~~~~~iaGGllLl~ia~~ml~   80 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGA-IVLRILLTAVAVYLLAIPFLKLIGGLLLLWIGWKLLL   80 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            56889999999999999988888763      2556665554 4566665555555555899999999999999999987


Q ss_pred             hc
Q 016749          351 DY  352 (383)
Q Consensus       351 ~~  352 (383)
                      +.
T Consensus        81 ~~   82 (176)
T TIGR03717        81 EE   82 (176)
T ss_pred             cc
Confidence            54

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=96.05  E-value=0.1  Score=49.08  Aligned_cols=72  Identities=22%  Similarity=0.319  Sum_probs=47.1

Q ss_pred             chhHHHHHHHHhCcCCCChhhHhHHHHHHH-HHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCC
Q 016749          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGI-AGAIV--FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED  232 (383)
Q Consensus       158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI-~gAvv--mR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~~~~~~~  232 (383)
                      .+|+.++....|++  .+.+.|+|-..+|= +|..+  .=.++.+.+..++ --+|++-+.|..=++.|+|.+.++|+
T Consensus         5 niDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~i-p~~wiLGlLGliPI~lGi~~l~~~~~   79 (191)
T PF03596_consen    5 NIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFI-PPEWILGLLGLIPIYLGIKALFSGED   79 (191)
T ss_pred             cHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            58999999999997  45555677777773 33221  1112222333222 23689889999999999998876543

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=95.74  E-value=1.5  Score=39.59  Aligned_cols=69  Identities=25%  Similarity=0.233  Sum_probs=43.3

Q ss_pred             hchhHHHHHHHHhCcCCCChhhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhc
Q 016749          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLS--YGIAGAIVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFKLFAS  229 (383)
Q Consensus       157 LSvDNafV~alIf~~f~lP~~~Q~rvL~--~GI~gAvvmR~ifI~~gv~Ll~~-----f~~I~~igGafLL~~a~k~~~~  229 (383)
                      -+-+|+.++..-.++      -+++.+.  .|...+...=+.....|...+.+     ..++.++||+||+|.|++++++
T Consensus         7 PGP~~~~~i~~~~~~------G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~   80 (191)
T PF01810_consen    7 PGPVNLLVISNGLRK------GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS   80 (191)
T ss_pred             CCHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355788887776653      2334443  34444444444555555554433     3468899999999999999986


Q ss_pred             cC
Q 016749          230 EE  231 (383)
Q Consensus       230 ~~  231 (383)
                      ..
T Consensus        81 ~~   82 (191)
T PF01810_consen   81 KF   82 (191)
T ss_pred             cc
Confidence            53

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=95.49  E-value=1.9  Score=40.69  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             HHHHHHHhchhHHHH-HHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHHHh
Q 016749          150 GYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFKL  226 (383)
Q Consensus       150 ~~lLE~sLSvDNafV-~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f-~-~I~~igGafLL~~a~k~  226 (383)
                      ..++=.++|.|+..| ++.=.+.  ++. .-+..+..|+.-+ +|=.+-..+|..+-+.. + +-.+++|+.|++.|.+|
T Consensus         3 i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~m   78 (206)
T TIGR02840         3 LLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWI   78 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            456778999999877 4443332  222 1223455554443 23333333444443332 2 46789999999999999


Q ss_pred             hhcc
Q 016749          227 FASE  230 (383)
Q Consensus       227 ~~~~  230 (383)
                      +.+.
T Consensus        79 i~~~   82 (206)
T TIGR02840        79 IYNA   82 (206)
T ss_pred             HHHH
Confidence            8743

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=95.45  E-value=2.3  Score=39.89  Aligned_cols=78  Identities=26%  Similarity=0.309  Sum_probs=51.8

Q ss_pred             HHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHH
Q 016749          149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSS  223 (383)
Q Consensus       149 t~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv-~Ll~~----f~~I~~igGafLL~~a  223 (383)
                      +..++-.+=+=||+.+.+.-.++ +   ..+--....|+..+...=.+...+|. .++..    |..+.++|++||+|.|
T Consensus        12 ~~~~~~~~PGP~~~~v~~~~~~~-G---~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg   87 (208)
T COG1280          12 AALVLAATPGPDNLLVLARSLSR-G---RRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLG   87 (208)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHh-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34555666778999998887663 1   22333444555545555555556653 45544    5568999999999999


Q ss_pred             HHhhhcc
Q 016749          224 FKLFASE  230 (383)
Q Consensus       224 ~k~~~~~  230 (383)
                      +|+++..
T Consensus        88 ~~~~ra~   94 (208)
T COG1280          88 WKALRAG   94 (208)
T ss_pred             HHHHhcc
Confidence            9999865

>COG2119 Predicted membrane protein [Function unknown]

Probab=95.28  E-value=0.78  Score=43.35  Aligned_cols=160  Identities=15%  Similarity=0.216  Sum_probs=106.1

Q ss_pred             hhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhhhccCCCCC
Q 016749          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASEEDDTD  235 (383)
Q Consensus       159 vDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f~--~I~~igGafLL~~a~k~~~~~~~e~d  235 (383)
                      .|.-+.++++...     ++|++..+-|+.+|. .|-+.-..+|-+..+-++  +..++.|..-+..|+|++.++.++.+
T Consensus        17 GDKT~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~~   91 (190)
T COG2119          17 GDKTQLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDDE   91 (190)
T ss_pred             ccHHHHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence            7888999998875     778899999999997 899999999998886666  78888888777889999987643222


Q ss_pred             ccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhc---CCchhHHHHHHHH
Q 016749          236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT---RDPFIVFSSNLFA  312 (383)
Q Consensus       236 ~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT---~d~fIV~~g~ifa  312 (383)
                      ..+..                        .+....-.-+.++..-|+=|     -+=+|.++++   ++++.|+.|..+|
T Consensus        92 e~~~~------------------------~~~~~f~~tfi~~FlaE~GD-----KTQiATIaLaA~~~~~~~V~~Gt~lg  142 (190)
T COG2119          92 EAQAA------------------------SPRGVFVTTFITFFLAELGD-----KTQIATIALAADYHSPWAVFAGTTLG  142 (190)
T ss_pred             ccccc------------------------ccccHHHHHHHHHHHHHhcc-----HHHHHHHHHhhcCCCceeeehhhHHH
Confidence            11100                        00000011233344455555     2345555554   4568899999888


Q ss_pred             HHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHhhhc
Q 016749          313 ILGLRSLFTLISEGMADL---EYLQPSIAVVLGFIGCKMILDY  352 (383)
Q Consensus       313 IlgLRslyf~l~~ll~rf---~yL~~ga~~iL~fIGvkMll~~  352 (383)
                      .+.--.+..+..+++.+-   ..++..++++..+.|...+.+.
T Consensus       143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~  185 (190)
T COG2119         143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQV  185 (190)
T ss_pred             HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777766666666543   3455566666666776666554

>PRK10958 leucine export protein LeuE; Provisional

Probab=94.96  E-value=3.2  Score=38.84  Aligned_cols=73  Identities=16%  Similarity=0.148  Sum_probs=48.0

Q ss_pred             HHHHHhchhHHHHHHHHhCcCCCChhhHhHHHH--HHHHHHHHHHHHHHHHHHH-HHHhh----hHHHHHHHHHHHHHHH
Q 016749          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS--YGIAGAIVFRLSLILLGTA-TLQRF----EAVNLVLAGILLFSSF  224 (383)
Q Consensus       152 lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~--~GI~gAvvmR~ifI~~gv~-Ll~~f----~~I~~igGafLL~~a~  224 (383)
                      ++=.+=+-||+.++..-.++      -+++.+.  .|+..+...=+....+|.. +++.+    ..+.++||+||+|.|+
T Consensus        19 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~   92 (212)
T PRK10958         19 FIVLLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGV   92 (212)
T ss_pred             HHhcCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33456678999999887663      2344444  4555555555555555554 44343    4578999999999999


Q ss_pred             Hhhhcc
Q 016749          225 KLFASE  230 (383)
Q Consensus       225 k~~~~~  230 (383)
                      |.++++
T Consensus        93 ~~~~~~   98 (212)
T PRK10958         93 KMLRAA   98 (212)
T ss_pred             HHHHhh
Confidence            999864

>PRK09304 arginine exporter protein; Provisional

Probab=94.88  E-value=3.3  Score=38.52  Aligned_cols=78  Identities=18%  Similarity=0.144  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhH----HHHHHHHHHHH
Q 016749          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEA----VNLVLAGILLF  221 (383)
Q Consensus       147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~-Ll~~f~~----I~~igGafLL~  221 (383)
                      ++.|+.+-..=+-||+.+...-.++      .+.-....|+..+..+=.....+|.. +++.++|    +.++|++||+|
T Consensus         9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly   82 (207)
T PRK09304          9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW   82 (207)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556777777788999998875542      12334555555555555555445553 5656554    78899999999


Q ss_pred             HHHHhhhcc
Q 016749          222 SSFKLFASE  230 (383)
Q Consensus       222 ~a~k~~~~~  230 (383)
                      .|+|+++.+
T Consensus        83 Lg~~~~rs~   91 (207)
T PRK09304         83 YGFGAFKTA   91 (207)
T ss_pred             HHHHHHHHh
Confidence            999999864

>PRK10229 threonine efflux system; Provisional

Probab=92.77  E-value=1.2  Score=41.00  Aligned_cols=79  Identities=14%  Similarity=0.149  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHH
Q 016749          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFS  222 (383)
Q Consensus       148 lt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv-~Ll~~f~----~I~~igGafLL~~  222 (383)
                      .++.+...+=+-||+.++..-.++ +   ..+--....|+..+...=.++..+|. .+++..+    .+.++|++||+|.
T Consensus        10 ~~~~~~~~sPGP~~~~vi~~~~~~-G---~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlyl   85 (206)
T PRK10229         10 MVHIVALMSPGPDFFFVSQTAVSR-S---RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWM   85 (206)
T ss_pred             HHHHHHhcCCCchhHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            335566667788999999887764 1   22222345566555555555555555 4555544    5788999999999


Q ss_pred             HHHhhhcc
Q 016749          223 SFKLFASE  230 (383)
Q Consensus       223 a~k~~~~~  230 (383)
                      |+|.+++.
T Consensus        86 g~~~~~~~   93 (206)
T PRK10229         86 GYQMLRGA   93 (206)
T ss_pred             HHHHHHhc
Confidence            99999854

>TIGR00948 2a75 L-lysine exporter

Probab=92.51  E-value=0.91  Score=40.91  Aligned_cols=67  Identities=15%  Similarity=0.087  Sum_probs=45.5

Q ss_pred             chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHh----hhHHHHHHHHHHHHHHHHhhhcc
Q 016749          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFKLFASE  230 (383)
Q Consensus       158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~-Ll~~----f~~I~~igGafLL~~a~k~~~~~  230 (383)
                      +-||++++..-.++ +     +--....|+..+...=.++..+|.. +++.    +..+.++||+||+|.|+|.+++.
T Consensus         6 GP~~~~vi~~~~~~-~-----~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~   77 (177)
T TIGR00948         6 GAQNAFVLRQGIRR-E-----HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA   77 (177)
T ss_pred             cchHHHHHHHHHcc-c-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45888888887762 1     2234455666665555555555554 5544    44689999999999999999864

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=92.18  E-value=1.2  Score=44.91  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhhcccHHHHHHhcC---Cc-----hhHHHHHHHHHHHHHHHHHHH-HHHHHhhhchHHHHHHHHHHHH
Q 016749          275 LTVAVIELSDIAFAVDSIPAVFGVTR---DP-----FIVFSSNLFAILGLRSLFTLI-SEGMADLEYLQPSIAVVLGFIG  345 (383)
Q Consensus       275 ~~vl~IE~~DlvFSlDSVpAafAIT~---d~-----fIV~~g~ifaIlgLRslyf~l-~~ll~rf~yL~~ga~~iL~fIG  345 (383)
                      ..+++.-++|.+.|+||+.....+..   -|     -..+.| +++++.+|...-.+ +.++++|+++++.....|.+.|
T Consensus        63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~G-i~gAlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a  141 (302)
T TIGR03718        63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWG-ILGALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTG  141 (302)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            35666777899999999987776642   12     245555 45666788875554 5788899999999999999999


Q ss_pred             HHHhhhc
Q 016749          346 CKMILDY  352 (383)
Q Consensus       346 vkMll~~  352 (383)
                      .||+.+.
T Consensus       142 ~k~~~~~  148 (302)
T TIGR03718       142 IKMLFEG  148 (302)
T ss_pred             HHHHhhc
Confidence            9999863

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=89.49  E-value=4.3  Score=37.41  Aligned_cols=74  Identities=11%  Similarity=0.129  Sum_probs=47.8

Q ss_pred             HHHHHHhchhHHHHHHHHhCcCCCChhhHhHHH--HHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHH
Q 016749          151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSS  223 (383)
Q Consensus       151 ~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL--~~GI~gAvvmR~ifI~~gv~-Ll~~f~----~I~~igGafLL~~a  223 (383)
                      .++-.+=+-||+.+...-.++      -+|+.+  ..|+..+...=.+...+|.. +++.++    .+.++|++||+|.|
T Consensus        14 ~~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg   87 (205)
T PRK10520         14 IILSLSPGSGAINTMSTSISH------GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLG   87 (205)
T ss_pred             HHHhcCCchhHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            344455567888888776653      233433  34666655555555555554 554544    57899999999999


Q ss_pred             HHhhhcc
Q 016749          224 FKLFASE  230 (383)
Q Consensus       224 ~k~~~~~  230 (383)
                      +|.++.+
T Consensus        88 ~~~~~s~   94 (205)
T PRK10520         88 IQQWRAA   94 (205)
T ss_pred             HHHHhCC
Confidence            9999864

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=89.40  E-value=3.1  Score=37.44  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHHHhhhc
Q 016749          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFAS  229 (383)
Q Consensus       159 vDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv-~Ll~~f~----~I~~igGafLL~~a~k~~~~  229 (383)
                      -||+.++..-.++    ...+--....|+..+...=+....+|. .+++..+    .+.++||+||+|.|++.+++
T Consensus         4 P~~~~~~~~~~~~----G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~   75 (185)
T TIGR00949         4 PNFFVVMQTSLSS----GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK   75 (185)
T ss_pred             cchHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4677777766553    122222345555666555555555544 4555444    47899999999999999985

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=88.78  E-value=27  Score=34.88  Aligned_cols=63  Identities=10%  Similarity=0.026  Sum_probs=41.4

Q ss_pred             cHHHHHHhcCCchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhcc
Q 016749          291 SIPAVFGVTRDPFIVFSSNLFAI-LGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF  353 (383)
Q Consensus       291 SVpAafAIT~d~fIV~~g~ifaI-lgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~  353 (383)
                      +|..+++++-..-+.+++..+.+ ..+|.......+.-+..+++++..+.++..+|+-+..+.+
T Consensus       211 Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~~~~  274 (279)
T PRK10019        211 GATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGVHGF  274 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666665555554444443 4566555555555555566778889999999998887654

>COG4280 Predicted membrane protein [Function unknown]

Probab=82.84  E-value=45  Score=32.40  Aligned_cols=101  Identities=16%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHhhhcccc
Q 016749          278 AVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLE--YLQPSIAVVLGFIGCKMILDYFGF  355 (383)
Q Consensus       278 l~IE~~DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~ll~rf~--yL~~ga~~iL~fIGvkMll~~~~~  355 (383)
                      ..+|-..+++.+   +|.-+-+....=.+.|..+|-..+-.+...+-.-+.|-|  .+|..+...|.-.|.-=+-+..|+
T Consensus       126 v~LeglEv~~iV---ialgaa~sqwleAi~gagfA~vlvlvl~~~lh~plarvpe~~lKfvag~lL~sfGtfWlgegvg~  202 (236)
T COG4280         126 VALEGLEVSLIV---IALGAASSQWLEAIMGAGFASVLVLVLTAILHSPLARVPEPHLKFVAGALLFSFGTFWLGEGVGF  202 (236)
T ss_pred             HHHhhheeeeee---eeechhhhHHHHHHHHHHHHHHHHHHHHHHhccHHhhCCchhHHHHHHHHHHHhhHHHhccccCC
Confidence            345555555543   222222333444677888888887777777777777654  689999999988888777788889


Q ss_pred             ccC-hhHHHHHHHHHHHH-HHHHHhhcc
Q 016749          356 HIS-TEASLSFVATSLSA-GVLLSLMKK  381 (383)
Q Consensus       356 ~IP-~~~sl~vi~~il~~-si~~Sl~~~  381 (383)
                      +.| ............++ ..++|+++.
T Consensus       203 dwPgdeLaiL~l~a~~gl~~aiisv~W~  230 (236)
T COG4280         203 DWPGDELAILFLLAYLGLNYAIISVYWF  230 (236)
T ss_pred             CCCchHHHHHHHHHHHHHhHHHheeeee
Confidence            999 66666666666666 445666543

>COG1279 Lysine efflux permease [General function prediction only]

Probab=81.53  E-value=52  Score=31.64  Aligned_cols=75  Identities=24%  Similarity=0.274  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhH----HHHHHHHH
Q 016749          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT----ATLQRFEA----VNLVLAGI  218 (383)
Q Consensus       147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv----~Ll~~f~~----I~~igGaf  218 (383)
                      |+-+.-+=..+++.|+||+-.=.+        |++++..-+.-+ +.=.+++..|+    .++++.+|    +.+.|.+|
T Consensus         9 fll~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~c~-i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~F   79 (202)
T COG1279           9 FLLGASLILPIGAQNAFVLNQGIR--------REYVLPIALLCA-ISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAF   79 (202)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHh--------hccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            333444556789999999865433        355655544433 34444444443    36666665    56677889


Q ss_pred             HHHHHHHhhhcc
Q 016749          219 LLFSSFKLFASE  230 (383)
Q Consensus       219 LL~~a~k~~~~~  230 (383)
                      |+|.|++-+++.
T Consensus        80 Ll~yg~~a~~~a   91 (202)
T COG1279          80 LLYYGLLALKSA   91 (202)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998854

>PRK11469 hypothetical protein; Provisional

Probab=80.99  E-value=31  Score=32.30  Aligned_cols=98  Identities=19%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHhh----Chh-------hHHHHHHHHHHHHHhchhHHHH-HHHHhCcCCCChhhHhHHHHHHHHHH
Q 016749          123 FCVSTAVAFGLGVGFIE----GAS-------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA  190 (383)
Q Consensus       123 ~wv~lal~F~~~i~~~~----g~~-------~a~eflt~~lLE~sLSvDNafV-~alIf~~f~lP~~~Q~rvL~~GI~gA  190 (383)
                      -|++..+++....|-..    +.+       .-..+.....+=.++|+||+-| ++.-+..  +|.  -.-++..|+.- 
T Consensus        70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~g--~~~--~~~~~~ig~~s-  144 (188)
T PRK11469         70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQ--VNI--IATALAIGCAT-  144 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--hhH--HHHHHHHHHHH-
Confidence            47777777766555321    111       1122445677788999999988 5554432  331  12334444433 


Q ss_pred             HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhc
Q 016749          191 IVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFKLFAS  229 (383)
Q Consensus       191 vvmR~ifI~~gv~Ll~~-----f~~I~~igGafLL~~a~k~~~~  229 (383)
                          +++..+|.++=.+     -.|..+++|+.|+..|+|++.+
T Consensus       145 ----~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~  184 (188)
T PRK11469        145 ----LIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT  184 (188)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3445555443221     1367889999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00