Citrus Sinensis ID: 016752

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAAYAGRGVAGREGRMS
cccccHHHHHHHcccccHHHHHHHHcccHHHHHHcccHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEccccEEEEEcccccEEEcccccccccccccEEEEEEEEEcccccEEEEEEEEEEcccccccEEEEEEcccccEEEEccccccccccccccEEEcccEEEEEEEccccccccEEEEEEccccEEEEEcccccccccccEEEEEEEEccEEEEEEEcccccEEEEEEEcccEEEEEEEccccccccccEEEEEEccEEEEEEcccccccccccccEEEEEEccccEEEEEEEEEccccccccEEEEEcccccccccccccccccccccc
cccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHcccEEEEEEEcccEEEEcccccccccccccccccccccEccccccccccEEEEEEEEccEEEEEEcccccEEEEccccccEEEEccccccccccccEEEEEEEEccccccEEEEEEEEccccccccEEEEEEEccccccEEEEccccccEccccccEEEccEEEEEEEcccccccccEEEEEEcccccccccccccccccccEEEEEEEHHHHHHHEEEccccccEEEEEEEEccHHEEEEEccccccccccEEEEEcccEEEEEEEccccccccccEEEEEEEEEcccEEEEEEcccccccccccEEEEcccEEEEcccccccccccccccc
maglptdinidILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIetntnlslilsgtpapildssrywngkIFSASLdslnlgveldhpfknckgrtpiidscnglialkndengiafwnpstkehlilpkfwgdlkdKVHRVVDgfgydavnddyKVFRLVQFVRENVEYTEVSVYSLRsnswrrirvdfpyyilhgwdgtfadgHVHWLvtnnpkddiENLIVAFnleseefqevplphledkkNVLVMFVGNFsgclyfsclcnypqpvdiwVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKfkygeedddinrwelywydpqsqkaadqvtihgvpqgcrdtLVCVDSLVSLAAYAgrgvagregrms
maglptdinidilSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSietntnlslilsGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFgydavnddyKVFRLVQFVrenveytevsvyslrsnswrriRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALaysksedkvlvdkfkygeedddinRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAayagrgvagregrms
MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAAYAGRGVAGREGRMS
******DINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLV*************RWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAAYAGRGV********
MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLV******************
MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAAYAGRG*********
*AGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAAY*************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAAYAGRGVAGREGRMS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
Q9SU30413 F-box protein CPR30 OS=Ar yes no 0.879 0.815 0.348 2e-43
Q9SUY0402 F-box protein At4g22390 O no no 0.900 0.858 0.298 2e-30
Q8GXC7427 F-box/kelch-repeat protei no no 0.791 0.709 0.294 9e-23
Q9LU24360 Putative F-box protein At no no 0.843 0.897 0.251 2e-19
Q9LIR8364 F-box/kelch-repeat protei no no 0.877 0.923 0.267 1e-18
Q4PSN6410 F-box/WD-40 repeat-contai no no 0.671 0.626 0.274 4e-16
Q7X7A9312 F-box protein At1g11270 O no no 0.569 0.698 0.305 2e-14
Q9SFC7417 F-box protein At3g07870 O no no 0.866 0.796 0.256 1e-13
Q84X43295 F-box only protein 8 OS=A no no 0.590 0.766 0.251 4e-12
Q9LX89445 F-box protein At5g10340 O no no 0.644 0.555 0.273 7e-12
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function desciption
 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 199/396 (50%), Gaps = 59/396 (14%)

Query: 1   MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILS 60
           MA +P DI  DI  RL  K L+R +  SK    LI+  +FI+ HL R ++T  +L ++L 
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query: 61  GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
           G              +++S  LDSL+   +++HP K   G T +  S NGLI L N    
Sbjct: 61  GAL------------RLYSVDLDSLDSVSDVEHPMKR-GGPTEVFGSSNGLIGLSNSPTD 107

Query: 121 IAFWNPSTKEHLILPKFWGDLKDKVHR---VVDGFGYDAVNDDYKVFRLVQFVRENVEYT 177
           +A +NPST++   LP    DL D       V  G GYD+V+DDYKV R+VQF  ++ +  
Sbjct: 108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDEL 167

Query: 178 ------EVSVYSLRSNSWRRIR---------VDFPYYILH--GWDGTFADGHVHWLVTNN 220
                 EV V+SL+ NSW+RI            F Y++L+  G+ G  A   +HW++   
Sbjct: 168 GCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGY-GVLAGNSLHWVLPRR 226

Query: 221 PKDDIENLIVAFNLESEEFQEVPLPHLEDKKNV-LVMFVGNFSGCLYFSCLCNYPQP-VD 278
           P     NLIV F+L  EEF+ V  P      NV + M +G   GCL    +CNY Q  VD
Sbjct: 227 PGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCL--CLMCNYDQSYVD 284

Query: 279 IWVLK-----GCWTKAFSFHRSVG----DYVKALAYSKSEDKVLVDKFKYGEEDDDINRW 329
           +W++K       WTK F+  +        Y++ L YSK + KVL+          ++N  
Sbjct: 285 VWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLL----------ELNNT 334

Query: 330 ELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLV 365
           +L W+D +S+K +  + I   P      LV V SLV
Sbjct: 335 KLVWFDLESKKMS-TLRIKDCPSSYSAELV-VSSLV 368
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSN6|FBW1_ARATH F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana GN=FBW1 PE=2 SV=1 Back     alignment and function description
>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q84X43|FBX8_ARATH F-box only protein 8 OS=Arabidopsis thaliana GN=FBX8 PE=2 SV=1 Back     alignment and function description
>sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
255583943389 ubiquitin-protein ligase, putative [Rici 0.885 0.871 0.382 2e-51
224089629396 f-box family protein [Populus trichocarp 0.898 0.868 0.368 7e-48
224053103408 predicted protein [Populus trichocarpa] 0.887 0.833 0.372 2e-44
357448231388 F-box protein [Medicago truncatula] gi|3 0.866 0.855 0.332 3e-43
255583935395 conserved hypothetical protein [Ricinus 0.879 0.853 0.347 1e-42
110738553413 hypothetical protein [Arabidopsis thalia 0.879 0.815 0.348 1e-41
4725955408 putative protein [Arabidopsis thaliana] 0.879 0.825 0.348 1e-41
30682162413 F-box protein CPR30 [Arabidopsis thalian 0.879 0.815 0.348 1e-41
297809553414 F-box family protein [Arabidopsis lyrata 0.827 0.765 0.348 4e-40
224137296419 predicted protein [Populus trichocarpa] 0.879 0.804 0.332 1e-39
>gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 148/387 (38%), Positives = 209/387 (54%), Gaps = 48/387 (12%)

Query: 1   MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILS 60
           M+ LP ++  +IL RL+ K LL  +C SK + +LIDS  FI +HL  SIE+  NLS+IL 
Sbjct: 1   MSNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILK 60

Query: 61  GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
            +             +++S S D L+    LDHP         I+ SCNGL+ + N  + 
Sbjct: 61  SS-------------ELYSLSFDLLDNIQPLDHPLMCYNHGVKILGSCNGLLCICNIVDD 107

Query: 121 IAFWNPSTKEHLILPKFWGDLKD-----KVHRVVDGFGYDAVNDDYKVFRLVQFV---RE 172
           IA WNPS + H ++P    +LK           V GFGYD  NDDYK+ R+ QF    R+
Sbjct: 108 IALWNPSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRK 167

Query: 173 NVEYTEVSVYSLRSNSWRRIRVDFPYYILH-GWDGTFADGHVHWLVTNNPKDDIENLIVA 231
           + E +EV V+SLR NSWRRI  D PY +L+ G +G +A+G +HWLV+ +P   + + IVA
Sbjct: 168 SFE-SEVKVFSLRKNSWRRI-ADMPYCVLYPGENGIYANGALHWLVSQDPDSTVADTIVA 225

Query: 232 FNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVL-----KGCW 286
            +L  E++  VP P   D      M VG   GCL         + VD+WV+     K  W
Sbjct: 226 LDLGVEDYHVVPKPEFVDMN--CNMGVGVLQGCLSLLAYAR-SERVDVWVMEEYMVKESW 282

Query: 287 TKAFSFHR----SVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342
           +K FS  R     +   +K LAYSKS ++VL+       E D++N   L+WYD + ++  
Sbjct: 283 SKLFSVARLEVIGILRSLKPLAYSKSGNEVLI-------EHDNVN---LFWYDLKRKEVV 332

Query: 343 DQVTIHGVPQGCRDTLVCVDSLVSLAA 369
           + V I GVP    +  +CV SLV L A
Sbjct: 333 N-VWIQGVPIT-FEAEICVGSLVPLNA 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224089629|ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357448231|ref|XP_003594391.1| F-box protein [Medicago truncatula] gi|355483439|gb|AES64642.1| F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255583935|ref|XP_002532715.1| conserved hypothetical protein [Ricinus communis] gi|223527542|gb|EEF29664.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|110738553|dbj|BAF01202.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis thaliana] gi|7267958|emb|CAB78299.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30682162|ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana] gi|145333023|ref|NP_001078377.1| F-box protein CPR30 [Arabidopsis thaliana] gi|142989747|sp|Q9SU30.2|CPR30_ARATH RecName: Full=F-box protein CPR30; AltName: Full=Protein CONSTITUTIVE EXPRESSER OF PR GENES 30 gi|332657747|gb|AEE83147.1| F-box protein CPR30 [Arabidopsis thaliana] gi|332657748|gb|AEE83148.1| F-box protein CPR30 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297809553|ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297318497|gb|EFH48919.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224137296|ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|222867152|gb|EEF04283.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.877 0.813 0.357 4.5e-43
TAIR|locus:2127465402 AT4G22390 "AT4G22390" [Arabido 0.882 0.840 0.311 4.7e-32
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.532 0.477 0.313 4.2e-26
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.788 0.829 0.286 1.4e-25
TAIR|locus:2094947360 AT3G16210 "AT3G16210" [Arabido 0.681 0.725 0.237 1.3e-20
TAIR|locus:2089473410 AT3G21410 "AT3G21410" [Arabido 0.733 0.685 0.282 3e-15
TAIR|locus:2202099312 AT1G11270 "AT1G11270" [Arabido 0.660 0.810 0.307 1.1e-14
TAIR|locus:2172239379 AT5G62660 "AT5G62660" [Arabido 0.715 0.722 0.278 1.3e-13
TAIR|locus:2090582368 AT3G17710 "AT3G17710" [Arabido 0.657 0.684 0.276 2.9e-12
TAIR|locus:2127333417 AT4G21240 "AT4G21240" [Arabido 0.663 0.609 0.286 3.2e-12
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 142/397 (35%), Positives = 203/397 (51%)

Query:     1 MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILS 60
             MA +P DI  DI  RL  K L+R +  SK    LI+  +FI+ HL R ++T  +L ++L 
Sbjct:     1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query:    61 GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
             G              +++S  LDSL+   +++HP K   G T +  S NGLI L N    
Sbjct:    61 GAL------------RLYSVDLDSLDSVSDVEHPMKR-GGPTEVFGSSNGLIGLSNSPTD 107

Query:   121 IAFWNPSTKEHLILPKFWGDLKDKVHR---VVDGFGYDAVNDDYKVFRLVQFVRENVEYT 177
             +A +NPST++   LP    DL D       V  G GYD+V+DDYKV R+VQF  ++ +  
Sbjct:   108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDEL 167

Query:   178 ------EVSVYSLRSNSWRRIR-----VD----FPYYILH--GWDGTFADGHVHWLVTNN 220
                   EV V+SL+ NSW+RI      +     F Y++L+  G+ G  A   +HW++   
Sbjct:   168 GCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGY-GVLAGNSLHWVLPRR 226

Query:   221 PKDDIENLIVAFNLESEEFQEVPLPHLEDKKNV-LVMFVGNFSGCLYFSCL-CNYPQP-V 277
             P     NLIV F+L  EEF+ V  P      NV + M +G   GCL   CL CNY Q  V
Sbjct:   227 PGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCL---CLMCNYDQSYV 283

Query:   278 DIWVLK-----GCWTKAFSFHR--SVGD--YVKALAYSKSEDKVLVDKFKYGEEDDDINR 328
             D+W++K       WTK F+  +  SV    Y++ L YSK + KVL++          +N 
Sbjct:   284 DVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLE----------LNN 333

Query:   329 WELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLV 365
              +L W+D +S+K +  + I   P      LV V SLV
Sbjct:   334 TKLVWFDLESKKMST-LRIKDCPSSYSAELV-VSSLV 368
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0042177 "negative regulation of protein catabolic process" evidence=IMP
TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089473 AT3G21410 "AT3G21410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202099 AT1G11270 "AT1G11270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172239 AT5G62660 "AT5G62660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090582 AT3G17710 "AT3G17710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127333 AT4G21240 "AT4G21240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SU30CPR30_ARATHNo assigned EC number0.34840.87980.8159yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00010191
hypothetical protein (408 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 5e-24
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 1e-05
pfam0064648 pfam00646, F-box, F-box domain 6e-05
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 98.6 bits (246), Expect = 5e-24
 Identities = 56/204 (27%), Positives = 85/204 (41%), Gaps = 17/204 (8%)

Query: 105 IDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVF 164
           +  C+GLI        +  WNPST +   LP       +K        GYD +   YKV 
Sbjct: 1   VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPIEKQYKVL 58

Query: 165 RLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDD 224
                     +  E  VY+L SNSWR I    P++ L    G   +G +++L     K +
Sbjct: 59  CFSDRSGNRNQS-EHQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYL-AYTLKTN 115

Query: 225 IENLIVAFNLESEEFQE-VPLP-HLEDKKNVLVMFV--GNFSGCLYFSCLCNYPQPVDIW 280
            +  IV+F++ SE F+E +PLP    D  + L +    G  +         N+    D+W
Sbjct: 116 PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNF----DLW 171

Query: 281 VL----KGCWTKAFSFHRSVGDYV 300
           VL    K  W+K F+        +
Sbjct: 172 VLNDAGKQEWSKLFTVPIPPLPDL 195

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.67
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.58
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.56
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.96
PHA02713557 hypothetical protein; Provisional 98.95
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.95
PHA02713557 hypothetical protein; Provisional 98.91
PHA03098534 kelch-like protein; Provisional 98.88
PLN02153341 epithiospecifier protein 98.84
PHA02790480 Kelch-like protein; Provisional 98.81
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.79
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.76
PLN02193470 nitrile-specifier protein 98.74
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.64
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.61
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.5
PHA03098534 kelch-like protein; Provisional 98.45
PLN02153341 epithiospecifier protein 98.38
PLN02193470 nitrile-specifier protein 98.37
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.36
PHA02790480 Kelch-like protein; Provisional 98.32
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.32
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.23
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.13
KOG4693392 consensus Uncharacterized conserved protein, conta 97.84
KOG1230 521 consensus Protein containing repeated kelch motifs 97.73
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.38
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.15
KOG0379482 consensus Kelch repeat-containing proteins [Genera 97.12
KOG4693392 consensus Uncharacterized conserved protein, conta 97.06
KOG2997366 consensus F-box protein FBX9 [General function pre 96.79
KOG1230 521 consensus Protein containing repeated kelch motifs 96.14
KOG0281499 consensus Beta-TrCP (transducin repeats containing 96.04
KOG2055514 consensus WD40 repeat protein [General function pr 95.5
PF1396450 Kelch_6: Kelch motif 95.43
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 94.94
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.89
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 94.26
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 93.87
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 93.72
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 93.15
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 92.51
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 91.8
smart00284255 OLF Olfactomedin-like domains. 91.58
PF1396450 Kelch_6: Kelch motif 90.93
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 90.88
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 89.65
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 88.16
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 87.58
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 86.98
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 86.56
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 85.97
smart0061247 Kelch Kelch domain. 84.73
KOG4341483 consensus F-box protein containing LRR [General fu 82.56
PLN02772 398 guanylate kinase 81.57
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 80.45
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 80.13
COG3055381 Uncharacterized protein conserved in bacteria [Fun 80.08
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=2.3e-34  Score=253.03  Aligned_cols=221  Identities=25%  Similarity=0.397  Sum_probs=161.5

Q ss_pred             eeCcCeeEEEecCCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEc
Q 016752          105 IDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSL  184 (383)
Q Consensus       105 ~~s~~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss  184 (383)
                      ++|||||||+... ..++||||+||+++.||+++...... .....+||||+.+++||||++..... ......++||++
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~   77 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTL   77 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccc-ccceEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEe
Confidence            4799999998865 68999999999999999875431111 12257899999999999999976432 224578999999


Q ss_pred             CCCceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceee-EecCCCcCCcCCeeeeEEEEECC
Q 016752          185 RSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQ-EVPLPHLEDKKNVLVMFVGNFSG  263 (383)
Q Consensus       185 ~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~L~~~~G  263 (383)
                      ++++||.++ ..+........+|++||++||+.....+ .....|++||+++|+|+ .+++|........ ...|++++|
T Consensus        78 ~~~~Wr~~~-~~~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~-~~~L~~~~G  154 (230)
T TIGR01640        78 GSNSWRTIE-CSPPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVD-YLSLINYKG  154 (230)
T ss_pred             CCCCccccc-cCCCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCcccccccc-ceEEEEECC
Confidence            999999987 3332222223599999999999976431 11237999999999999 5999976532211 357999999


Q ss_pred             eEEEEEecCCCCcEEEEEeC----CceeeeEEEcC-CCC---ceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEe
Q 016752          264 CLYFSCLCNYPQPVDIWVLK----GCWTKAFSFHR-SVG---DYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYD  335 (383)
Q Consensus       264 ~L~~~~~~~~~~~l~iW~l~----~~W~~~~~i~~-~~~---~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~yd  335 (383)
                      +|+++........++||+|+    .+|+|.++|+. .+.   ....|.++..+|+ |++....       .....+++||
T Consensus       155 ~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~-I~~~~~~-------~~~~~~~~y~  226 (230)
T TIGR01640       155 KLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGE-IVLCCED-------ENPFYIFYYN  226 (230)
T ss_pred             EEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCE-EEEEeCC-------CCceEEEEEe
Confidence            99999986543369999998    57999999985 222   2255888888765 5554210       1133499999


Q ss_pred             CCCC
Q 016752          336 PQSQ  339 (383)
Q Consensus       336 l~~~  339 (383)
                      ++++
T Consensus       227 ~~~~  230 (230)
T TIGR01640       227 VGEN  230 (230)
T ss_pred             ccCC
Confidence            9875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.4 bits (148), Expect = 3e-10
 Identities = 55/377 (14%), Positives = 103/377 (27%), Gaps = 144/377 (38%)

Query: 71  RYWNGKIFSASLDSLNLGVELDHPFK---NCKGRTPIIDSCNGLIALKNDENGIAFWNPS 127
           +Y    I S   D           F    +CK    + D    +++ +  ++ I   +  
Sbjct: 15  QYQYKDILSVFED----------AFVDNFDCK---DVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 128 TKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDY-------------------------- 161
           +    +   FW  L  K   +V  F  + +  +Y                          
Sbjct: 62  SGTLRL---FW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 162 KVFRLVQ-FVRENV----EYTEV--SVYSLRSNSWRRIRVDFPYYILHGWDGT------- 207
           +++   Q F + NV     Y ++  ++  LR              ++ G  G+       
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA---------KNVLIDGVLGSGKTWVAL 168

Query: 208 ----------FADGHVHWL---VTNNPKDDIENL-----IVAFNLESEEFQEVPLPH-LE 248
                       D  + WL     N+P+  +E L      +  N  S       +   + 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 249 DKKNVLVMFVGNFSGCLYFSCLCNYPQPV--DIWVLKGCWTKAFSFH---------RSVG 297
             +  L           Y +CL      V  ++   K  W  AF+           + V 
Sbjct: 229 SIQAELRRL---LKSKPYENCLL-----VLLNVQNAK-AW-NAFNLSCKILLTTRFKQVT 278

Query: 298 DYVKALAY------------SKSEDKVLVDKF-KYGEED--------------------- 323
           D++ A               +  E K L+ K+     +D                     
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 324 DDINRWELYWYDPQSQK 340
           D +  W+  W      K
Sbjct: 339 DGLATWD-NWKHVNCDK 354

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.15
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.12
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.11
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.08
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.07
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.06
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.06
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.05
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.03
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.99
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.95
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.95
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.94
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.93
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.92
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.83
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.8
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.79
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.69
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.53
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.0
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.97
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.91
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.9
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.35
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.75
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.13
3jrp_A379 Fusion protein of protein transport protein SEC13 95.86
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 95.24
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 95.06
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 94.71
4e54_B435 DNA damage-binding protein 2; beta barrel, double 94.65
3jro_A 753 Fusion protein of protein transport protein SEC13 93.97
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 93.96
3jrp_A379 Fusion protein of protein transport protein SEC13 93.63
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 93.05
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 92.7
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 92.41
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 92.35
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 92.35
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 91.58
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 91.55
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 91.51
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 90.99
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 90.49
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 90.35
4g56_B357 MGC81050 protein; protein arginine methyltransfera 90.06
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 89.77
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 89.51
3bws_A 433 Protein LP49; two-domain, immunoglobulin-like, 7-b 89.13
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 88.05
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 87.9
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 87.61
3v9f_A 781 Two-component system sensor histidine kinase/RESP 87.56
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 87.48
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 87.19
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 86.78
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 86.14
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 86.08
3v65_B386 Low-density lipoprotein receptor-related protein; 85.08
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 84.73
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 84.68
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 84.35
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 84.32
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 84.3
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 83.09
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 82.62
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 82.38
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 82.32
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 82.31
3p5b_L400 Low density lipoprotein receptor variant; B-propel 82.21
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 82.17
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 81.97
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 81.43
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
Probab=99.15  E-value=1.2e-08  Score=92.68  Aligned_cols=223  Identities=11%  Similarity=0.058  Sum_probs=132.9

Q ss_pred             cEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEee--cCCcccEEEEEEcCCCceEEeccCCC
Q 016752          120 GIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVR--ENVEYTEVSVYSLRSNSWRRIRVDFP  197 (383)
Q Consensus       120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~--~~~~~~~~~vyss~~~~Wr~~~~~~p  197 (383)
                      .++++||.|++|..+|+.+..+..  + ..  ..++    + +++.++....  .......+++|+..+++|+.+. .+|
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~~--~-~~--~~~~----~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p  136 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRCL--F-GL--GEAL----N-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLP  136 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEES--C-EE--EEET----T-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCS
T ss_pred             ceEEecCCCCeEEECCCCCcchhc--e-eE--EEEC----C-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCC
Confidence            388999999999999987754311  1 11  1111    2 5666654321  2334567899999999999987 665


Q ss_pred             eeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEecCCCC-
Q 016752          198 YYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQ-  275 (383)
Q Consensus       198 ~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~-  275 (383)
                      .. ......+.++|.+|.+++..........+..||+.+++|+.++ +|....     ....+..+|+|+++....... 
T Consensus       137 ~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~  210 (315)
T 4asc_A          137 YV-VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-----LFGATVHDGRIIVAAGVTDTGL  210 (315)
T ss_dssp             SC-CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEEEEECSSSE
T ss_pred             Cc-ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh-----ceEEEEECCEEEEEeccCCCCc
Confidence            43 1223567899999999876332223345999999999999885 443322     224677899999998764432 


Q ss_pred             cEEEEEeC---CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEe-cc-CC--Cccc-cCCCcEEEEEeCCCCeEEEEEEE
Q 016752          276 PVDIWVLK---GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDK-FK-YG--EEDD-DINRWELYWYDPQSQKAADQVTI  347 (383)
Q Consensus       276 ~l~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~-~~-~~--~~~~-~~~~~~~~~ydl~~~~~~~~v~~  347 (383)
                      .-.+|+++   ..|.++..++.  +.....+.+. + +.|++.- .. ..  +.+. ...-..+..||+++++|+ .+ .
T Consensus       211 ~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~-~-~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~-~~-~  284 (315)
T 4asc_A          211 TSSAEVYSITDNKWAPFEAFPQ--ERSSLSLVSL-V-GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE-GV-L  284 (315)
T ss_dssp             EEEEEEEETTTTEEEEECCCSS--CCBSCEEEEE-T-TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE-EE-E
T ss_pred             cceEEEEECCCCeEEECCCCCC--cccceeEEEE-C-CEEEEECCccccCcCCccccccccCcEEEecCCCChhh-hh-c
Confidence            33678777   89998765443  1111122222 3 3555541 00 00  0000 001135899999999999 77 2


Q ss_pred             eccCCCeeeEEEEEccccc
Q 016752          348 HGVPQGCRDTLVCVDSLVS  366 (383)
Q Consensus       348 ~~~~~~~~~~~~y~~sl~~  366 (383)
                      ...... ..+..+...|.-
T Consensus       285 ~~~r~~-~~~~~~~~~l~v  302 (315)
T 4asc_A          285 REIAYA-AGATFLPVRLNV  302 (315)
T ss_dssp             SCSSCC-SSCEEEEEEECG
T ss_pred             cCCcCc-cceEEeCCEEEE
Confidence            222222 344444444443
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 2e-04
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 0.001
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 4  LPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEF 40
          LP ++ + I S L +  LL+     K +  L   +  
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.19
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.72
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.54
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.24
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.24
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.22
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.57
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.06
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 85.72
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 81.93
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 81.42
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.4e-12  Score=78.05  Aligned_cols=39  Identities=23%  Similarity=0.424  Sum_probs=37.0

Q ss_pred             CCCcHHHHHHHHccCCcccceeeeecchhhhhhcCChHH
Q 016752            2 AGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEF   40 (383)
Q Consensus         2 ~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F   40 (383)
                      +.||+|++.+||++||++++.|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            689999999999999999999999999999999998864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure