Citrus Sinensis ID: 016753

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
MEMILYLGAVWVAFLLGLFIGWLWKPKWAISRTKRHKLCESESSTPTQRLQIEKPRPPPVSSPEFDNSCTSELNHGQSNVVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRASGAPLSQPAFMAQINTKVDPSYLRALEGVEDLSKTEVVAASDRPLDRNISKLIILGGAIVLACSLNGGLLPKAFIFGVARRFGNMGKKL
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccEEEEEEEEEcccccccEEEEEEEEccccHHHHHHHHcccccHHcccccccEEEEEEEEcccccEEEEEEEEcccccccccEEEEEEEEEcccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEccccccccccEEEEEEEEEccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccHHHHHcccccccccccEEEEEccEEEEEEccccccHHHHHHHHHHcccccccccc
ccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHEEcccccEEEEEEEcccccccEEEEEEEEEccccHHHHHHHHccHHHHHHHHHHHHHHEEEEEccccccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEEEEccccccccccccEEEEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccc
MEMILYLGAVWVAFLLGLFIGwlwkpkwaisrtkrhklcesesstptqrlqiekprpppvsspefdnsctselnhgqsnvvteeDLEHLWRLAemkdggptwIKMMDRSTetmsyqawgrdpktgppqyrtstvyedvtpelvrdffwddVFRSKWDDMLAYSttleecpttgTMVIQWIRKfpffcsdreYIIGRRIWkagtdyycvtkgvpcnsvprrdkprrvdlcysswcirpvesrrgngqltACEVILFhhedmgipREIAKLGIRQGMwgavkkiepglrVYQKqrasgaplsqpafmaqintkvdpsylralegvedlsktevvaasdrpldrnISKLIILGGAIVLACslnggllpkaFIFGVARRFGNMGKKL
MEMILYLGAVWVAFLLGLFIGWLWKPKWAISRTkrhklcesesstptqrlqiekprpppVSSPEFDNSCTSELNHGQSNVVTEEDLEHLWRLaemkdggptWIKMMDRSTETMSYQawgrdpktgppqyrtSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTleecpttgTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTkgvpcnsvprrdkprrvdLCYSswcirpvesrrgngQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRAsgaplsqpaFMAQINTKVDPSYLRALEgvedlsktevvaasdrpldrnISKLIILGGAIVLACSLNGGLLPKAFIFGVARRFGNMGKKL
MEMILYLGAVWVAFLLGLFIGWLWKPKWAISRTKRHKLCESESSTPTQRLQIEKPRPPPVSSPEFDNSCTSELNHGQSNVVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRASGAPLSQPAFMAQINTKVDPSYLRALEGVEDLSKTEVVAASDRPLDRNISKLIILGGAIVLACSLNGGLLPKAFIFGVARRFGNMGKKL
**MILYLGAVWVAFLLGLFIGWLWKPKWAISRT***************************************************DLEHLWRLAEMKDGGPTWIKMM***********************RTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQ*************FMAQINTKVDPSYLRALEGVEDLSKTEVVAASDRPLDRNISKLIILGGAIVLACSLNGGLLPKAFIFGVARRFG******
MEMILYLGAVWVAFLLGLFIGWLWKPKWAISRTKRHKL**********************************************DLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVP****PR**KPRRVDLCYSSWCIRPVES****GQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVY********************************************************LIILGGAIVLACSLNGGLLPKAFIFGVARRFGNM****
MEMILYLGAVWVAFLLGLFIGWLWKPKWAISR*************************************TSELNHGQSNVVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRASGAPLSQPAFMAQINTKVDPSYLRALEGVEDLSKTEVVAASDRPLDRNISKLIILGGAIVLACSLNGGLLPKAFIFGVARRFGNMGKKL
MEMILYLGAVWVAFLLGLFIGWLWKPKWAISRTKRHKLCESESSTPTQRLQIEKP***********************NVVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRA**********************************************RNISKLIILGGAIVLACSLNGGLLPKAFIFGVARRFGNM****
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MEMILYLGAVWVAFLLGLFIGWLWKPKWAISRTKRHKLCESESSTPTQRLQIEKPRPPPVSSPEFDNSCTSELNHGQSNVVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRASGAPLSQPAFMAQINTKVDPSYLRALEGVEDLSKTEVVAASDRPLDRNISKLIILGGAIVLACSLNGGLLPKAFIFGVARRFGNMGKKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
Q8R1R3373 StAR-related lipid transf yes no 0.378 0.388 0.305 2e-09
Q9NQZ5370 StAR-related lipid transf yes no 0.362 0.375 0.304 6e-09
Q9UKL6214 Phosphatidylcholine trans no no 0.193 0.345 0.363 1e-06
P53809214 Phosphatidylcholine trans yes no 0.422 0.757 0.247 5e-06
P02720213 Phosphatidylcholine trans no no 0.193 0.347 0.350 5e-06
P53808214 Phosphatidylcholine trans no no 0.422 0.757 0.230 0.0002
>sp|Q8R1R3|STAR7_MOUSE StAR-related lipid transfer protein 7, mitochondrial OS=Mus musculus GN=Stard7 PE=2 SV=2 Back     alignment and function desciption
 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 96  KDGGPTWIKMMDRSTETMSYQAWGRDPKTGPP--QYRTSTVYEDVTPELVRDFFWDDVFR 153
           KD    W  +MD+      ++ W R P TG    QYR    Y DVTP    +   D  +R
Sbjct: 138 KDKEEPWEMVMDKK----HFKLW-RRPITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYR 192

Query: 154 SKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRR--IWKAGTDYYCVTKG 211
            KWD ++     +E    +G+ V+ W+  FP+    R+Y+  RR  + +       V++ 
Sbjct: 193 KKWDALVIKLEVIERDAVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNVMVLVSRA 252

Query: 212 VPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNG 245
           V   SVP   +  RV    S   IRP +S   NG
Sbjct: 253 VEHPSVPESPEFVRVRSYESQMVIRPHKSFDENG 286

Mus musculus (taxid: 10090)
>sp|Q9NQZ5|STAR7_HUMAN StAR-related lipid transfer protein 7, mitochondrial OS=Homo sapiens GN=STARD7 PE=1 SV=2 Back     alignment and function description
>sp|Q9UKL6|PPCT_HUMAN Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1 SV=1 Back     alignment and function description
>sp|P53809|PPCT_RAT Phosphatidylcholine transfer protein OS=Rattus norvegicus GN=Pctp PE=2 SV=2 Back     alignment and function description
>sp|P02720|PPCT_BOVIN Phosphatidylcholine transfer protein OS=Bos taurus GN=PCTP PE=1 SV=1 Back     alignment and function description
>sp|P53808|PPCT_MOUSE Phosphatidylcholine transfer protein OS=Mus musculus GN=Pctp PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
224118378386 predicted protein [Populus trichocarpa] 0.953 0.945 0.659 1e-147
224135003389 predicted protein [Populus trichocarpa] 0.971 0.956 0.656 1e-144
224115516398 predicted protein [Populus trichocarpa] 0.968 0.932 0.631 1e-141
225426534438 PREDICTED: uncharacterized protein LOC10 0.997 0.872 0.594 1e-141
359474169427 PREDICTED: uncharacterized protein LOC10 0.997 0.894 0.600 1e-140
297742463384 unnamed protein product [Vitis vinifera] 0.840 0.838 0.709 1e-136
255555797428 phosphatidylcholine transfer protein, pu 0.997 0.892 0.587 1e-134
449520962432 PREDICTED: uncharacterized protein LOC10 0.989 0.877 0.574 1e-134
356516152443 PREDICTED: uncharacterized protein LOC10 0.981 0.848 0.565 1e-133
18033654424 putative nodule membrane protein [Medica 0.986 0.891 0.563 1e-132
>gi|224118378|ref|XP_002317804.1| predicted protein [Populus trichocarpa] gi|222858477|gb|EEE96024.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/388 (65%), Positives = 299/388 (77%), Gaps = 23/388 (5%)

Query: 2   EMILYLGAVWVAFLLGLFIGWLWKPKWAISRTKRHKLCES---ESSTPTQRLQIEKPRPP 58
           E + +LG +W++FL+GL IGW WKPKW    + +   C S   ESS P+   +       
Sbjct: 7   ETVGFLGPLWISFLIGLIIGWSWKPKWVTRESDKLASCVSKILESSLPSSPCRF------ 60

Query: 59  PVSSPEFDNSCTSELNHGQSNV---VTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSY 115
                       S+LN  QSN+   VTEEDL+HL +L E+KDGG TWI MMDRST TM Y
Sbjct: 61  ----------LISQLNEEQSNIASLVTEEDLKHLNQLVEVKDGGSTWIHMMDRSTPTMRY 110

Query: 116 QAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTM 175
           QAW RDPKTGPPQYR+STV+ED +PE+VRD FWDD FR+KWDDMLAYS  L+EC  TGTM
Sbjct: 111 QAWRRDPKTGPPQYRSSTVFEDASPEIVRDLFWDDDFRTKWDDMLAYSAILDECSITGTM 170

Query: 176 VIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCI 235
           ++ WIRKFPFFCSDREYIIGRRIW++G  Y+CVTKGVPC+SVPRRDKPRRVDL YSSWCI
Sbjct: 171 LVHWIRKFPFFCSDREYIIGRRIWESGRSYFCVTKGVPCSSVPRRDKPRRVDLYYSSWCI 230

Query: 236 RPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRAS 295
           R VESRRG+GQLTACEV+LFHHEDMGIP EIAKLG+RQGMWG VKKIEPGLR YQK RAS
Sbjct: 231 RAVESRRGDGQLTACEVLLFHHEDMGIPWEIAKLGVRQGMWGTVKKIEPGLRAYQKARAS 290

Query: 296 GAPLSQPAFMAQINTKVDPSYLRALEGVEDLSKTEVV-AASDRPLDRNISKLIILGGAIV 354
           GA LS+PAFMAQ+NTK++P  LR+L G E+LS+ E     S++ L RNI KL+I GGAI+
Sbjct: 291 GAELSRPAFMAQVNTKINPELLRSLGGDENLSENEAATTTSEKSLGRNIPKLLIFGGAII 350

Query: 355 LACSLNGGLLPKAFIFGVARRFGNMGKK 382
           LACS + GLL KAFIF V RRFGNMG+ 
Sbjct: 351 LACSFDRGLLTKAFIFNVGRRFGNMGRN 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224135003|ref|XP_002321959.1| predicted protein [Populus trichocarpa] gi|222868955|gb|EEF06086.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115516|ref|XP_002317053.1| predicted protein [Populus trichocarpa] gi|222860118|gb|EEE97665.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426534|ref|XP_002278777.1| PREDICTED: uncharacterized protein LOC100247984 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474169|ref|XP_003631410.1| PREDICTED: uncharacterized protein LOC100247984 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742463|emb|CBI34612.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555797|ref|XP_002518934.1| phosphatidylcholine transfer protein, putative [Ricinus communis] gi|223541921|gb|EEF43467.1| phosphatidylcholine transfer protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449520962|ref|XP_004167501.1| PREDICTED: uncharacterized protein LOC101231837 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516152|ref|XP_003526760.1| PREDICTED: uncharacterized protein LOC100802806 [Glycine max] Back     alignment and taxonomy information
>gi|18033654|gb|AAL57201.1|AF355597_1 putative nodule membrane protein [Medicago sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
TAIR|locus:2010836385 CP5 "AT1G64720" [Arabidopsis t 0.958 0.953 0.596 2.7e-123
TAIR|locus:2153428449 AT5G54170 "AT5G54170" [Arabido 0.791 0.674 0.613 4.9e-112
TAIR|locus:2129790433 AT4G14500 "AT4G14500" [Arabido 0.921 0.815 0.495 6e-97
TAIR|locus:2094568419 AT3G23080 "AT3G23080" [Arabido 0.819 0.749 0.529 6e-97
TAIR|locus:505006338440 AT3G13062 "AT3G13062" [Arabido 0.772 0.672 0.303 1.8e-32
TAIR|locus:2012080403 AT1G55960 "AT1G55960" [Arabido 0.751 0.714 0.322 1.3e-31
MGI|MGI:2139090373 Stard7 "START domain containin 0.378 0.388 0.305 1.8e-08
UNIPROTKB|Q9NQZ5370 STARD7 "StAR-related lipid tra 0.362 0.375 0.304 8.4e-08
UNIPROTKB|Q9UKL6214 PCTP "Phosphatidylcholine tran 0.274 0.490 0.313 9e-07
RGD|3276214 Pctp "phosphatidylcholine tran 0.472 0.845 0.245 2.8e-06
TAIR|locus:2010836 CP5 "AT1G64720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
 Identities = 228/382 (59%), Positives = 284/382 (74%)

Query:     2 EMILYLGAVWVAFLLGLFIGWLWKPKWAISRTKRHKLCESESSTPTQRLQIEKPRPPPVS 61
             ++I+++  +W+A   G+ +GW+W+PKWA   +K   L    S++P + L ++ P     +
Sbjct:    19 DLIVFVAPLWIAVAAGVLVGWVWRPKWAYLDSK---LL---SNSP-KFLNLQLPTSILKT 71

Query:    62 SPEFDNSCTSELNHGQSNVVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRD 121
             S    N   S     ++  VT++D  HLW+L E+KDGGP WI+MMDRST T SYQAW RD
Sbjct:    72 SSHHVNPSLSSKE--KTGFVTDDDFRHLWKLVEVKDGGPCWIQMMDRSTPTFSYQAWRRD 129

Query:   122 PKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIR 181
             P+ GPPQYR+ TV+ED TPE+VRDFFWDD FRSKWDDML YS+TLE C  TGTMV+QW+R
Sbjct:   130 PENGPPQYRSRTVFEDATPEMVRDFFWDDEFRSKWDDMLLYSSTLERCKDTGTMVVQWVR 189

Query:   182 KFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESR 241
             KFPFFCSDREYIIGRRIW AG  +YC+TKGV   SVPR++KPRRVDL YSSWCIR VES+
Sbjct:   190 KFPFFCSDREYIIGRRIWDAGRVFYCITKGVQYPSVPRQNKPRRVDLYYSSWCIRAVESK 249

Query:   242 RGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRASGAPLSQ 301
             RG+G++T+CEV+LFHHEDMGIP EIAKLG+RQGMWGAVKKIEPGLR YQ+ +A+GA LS 
Sbjct:   250 RGDGEMTSCEVLLFHHEDMGIPWEIAKLGVRQGMWGAVKKIEPGLRAYQRAKAAGAGLSP 309

Query:   302 PAFMAQINTKVDPSYLRALEGVEDLSKTEVVAASDRPLDRNISKLIILGGAIVLACSLNG 361
              A MA INTKV         G    S  EV    D+P  +NI K++++GGAI LAC+L+ 
Sbjct:   310 SAIMAHINTKVSAEEFMNERG----SIAEVTG--DKPTGKNIPKILVVGGAIALACTLDK 363

Query:   362 GLLPKAFIFGVARRFGNMGKKL 383
             GLL KA IFGVARRF  MGK++
Sbjct:   364 GLLTKAVIFGVARRFARMGKRM 385
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005773 "vacuole" evidence=IDA
TAIR|locus:2153428 AT5G54170 "AT5G54170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129790 AT4G14500 "AT4G14500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094568 AT3G23080 "AT3G23080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006338 AT3G13062 "AT3G13062" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012080 AT1G55960 "AT1G55960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2139090 Stard7 "START domain containing 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQZ5 STARD7 "StAR-related lipid transfer protein 7, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKL6 PCTP "Phosphatidylcholine transfer protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|3276 Pctp "phosphatidylcholine transfer protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XII.163.1
hypothetical protein (372 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
cd08870209 cd08870, START_STARD2_7-like, Lipid-binding START 4e-94
cd08911207 cd08911, START_STARD7-like, Lipid-binding START do 2e-13
cd08910207 cd08910, START_STARD2-like, Lipid-binding START do 2e-12
smart00234205 smart00234, START, in StAR and phosphatidylcholine 3e-10
cd00177193 cd00177, START, Lipid-binding START domain of mamm 8e-07
pfam01852205 pfam01852, START, START domain 6e-04
cd08871222 cd08871, START_STARD10-like, Lipid-binding START d 0.001
>gnl|CDD|176879 cd08870, START_STARD2_7-like, Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information 
 Score =  280 bits (717), Expect = 4e-94
 Identities = 108/213 (50%), Positives = 142/213 (66%), Gaps = 6/213 (2%)

Query: 79  NVVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPK-TGPPQYRTSTVYED 137
             V+EEDL  L +  +    G  W ++MD+ST  MSYQAW R PK TG  +Y    V+ED
Sbjct: 1   GHVSEEDLRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFED 60

Query: 138 VTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRR 197
            TPEL+RDF+WDD +R KWD+ +    TLEE   +GT +++W++KFPF  SDREY+I RR
Sbjct: 61  CTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARR 120

Query: 198 IWKAGTD-YYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFH 256
           +W++    Y CVTKGVP  SVPR    +RVD   SS  IR V+   G+GQ +ACEV  FH
Sbjct: 121 LWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVK---GDGQGSACEVTYFH 176

Query: 257 HEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVY 289
           + D GIPRE+AKL +++GM G +KK+E  LR Y
Sbjct: 177 NPDGGIPRELAKLAVKRGMPGFLKKLENALRKY 209

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of PtdCho to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers. It showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol. Length = 209
>gnl|CDD|176920 cd08911, START_STARD7-like, Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>gnl|CDD|176919 cd08910, START_STARD2-like, Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>gnl|CDD|216740 pfam01852, START, START domain Back     alignment and domain information
>gnl|CDD|176880 cd08871, START_STARD10-like, Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
KOG2761219 consensus START domain-containing proteins involve 100.0
cd08870209 START_STARD2_7-like Lipid-binding START domain of 100.0
cd08910207 START_STARD2-like Lipid-binding START domain of ma 100.0
cd08911207 START_STARD7-like Lipid-binding START domain of ma 100.0
cd08871222 START_STARD10-like Lipid-binding START domain of m 100.0
cd08872235 START_STARD11-like Ceramide-binding START domain o 100.0
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 100.0
cd08906209 START_STARD3-like Cholesterol-binding START domain 100.0
smart00234206 START in StAR and phosphatidylcholine transfer pro 100.0
cd08905209 START_STARD1-like Cholesterol-binding START domain 100.0
cd08904204 START_STARD6-like Lipid-binding START domain of ma 99.97
cd08874205 START_STARD9-like C-terminal START domain of mamma 99.97
cd08903208 START_STARD5-like Lipid-binding START domain of ma 99.97
PF01852206 START: START domain; InterPro: IPR002913 START (St 99.97
cd08914236 START_STARD15-like Lipid-binding START domain of m 99.97
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 99.97
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 99.97
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 99.97
cd08913240 START_STARD14-like Lipid-binding START domain of m 99.97
cd00177193 START Lipid-binding START domain of mammalian STAR 99.96
cd08873235 START_STARD14_15-like Lipid-binding START domain o 99.96
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 99.96
cd08902202 START_STARD4-like Lipid-binding START domain of ma 99.94
cd08908204 START_STARD12-like C-terminal lipid-binding START 99.94
cd08907205 START_STARD8-like C-terminal lipid-binding START d 99.94
cd08909205 START_STARD13-like C-terminal lipid-binding START 99.92
PLN00188 719 enhanced disease resistance protein (EDR2); Provis 99.88
KOG1739611 consensus Serine/threonine protein kinase GPBP [Si 99.82
cd08864208 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- 99.61
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 99.23
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 99.12
PF11274184 DUF3074: Protein of unknown function (DUF3074) 98.94
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 98.92
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 98.76
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 98.61
PF03364130 Polyketide_cyc: Polyketide cyclase / dehydrase and 98.27
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 98.04
PRK10724158 hypothetical protein; Provisional 97.93
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 97.87
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 97.47
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 97.36
PF10604139 Polyketide_cyc2: Polyketide cyclase / dehydrase an 97.11
cd07812141 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR 97.06
cd07824146 SRPBCC_6 Ligand-binding SRPBCC domain of an unchar 96.68
cd08865140 SRPBCC_10 Ligand-binding SRPBCC domain of an uncha 96.53
cd08862138 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of 96.52
cd07822141 SRPBCC_4 Ligand-binding SRPBCC domain of an unchar 96.31
cd07818150 SRPBCC_1 Ligand-binding SRPBCC domain of an unchar 94.75
COG5637217 Predicted integral membrane protein [Function unkn 94.41
cd07814139 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand- 94.32
cd07823146 SRPBCC_5 Ligand-binding SRPBCC domain of an unchar 92.67
cd07825144 SRPBCC_7 Ligand-binding SRPBCC domain of an unchar 91.38
COG2867146 Oligoketide cyclase/lipid transport protein [Lipid 90.0
cd07820137 SRPBCC_3 Ligand-binding SRPBCC domain of an unchar 85.13
cd08896146 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan 83.55
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-52  Score=388.49  Aligned_cols=210  Identities=48%  Similarity=0.825  Sum_probs=192.2

Q ss_pred             CCCCCHHHHHHHHHHHhcC--CCCCCcEEEEcccCCCccEEEEe-eCCCCCCCeEEEEEEEecCCHHHHHHHhcCccchh
Q 016753           78 SNVVTEEDLEHLWRLAEMK--DGGPTWIKMMDRSTETMSYQAWG-RDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRS  154 (383)
Q Consensus        78 ~~~vt~~Df~~~~~~~e~~--~~~~~Wel~~dk~~~~~~~kVwr-R~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~  154 (383)
                      .+.+|++||.++++++++.  +++.+|+++++|+    ++.+|+ |.|.+|+++||+.|+|+|+||+.|+|+++|+|||+
T Consensus         5 ~~~vs~~~~~~~~~~~e~~~~~~~~~We~~~~k~----~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRk   80 (219)
T KOG2761|consen    5 DGGVSEEDLPELLDLLEEKACDAGQGWELVMDKS----TPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRK   80 (219)
T ss_pred             cCcccccchHHHHHhhcccccCcccchhhhcccC----CceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHH
Confidence            3569999999999999998  6777999999965    688888 78889999999999999999999999999999999


Q ss_pred             hHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeC-CEEEEEEcccCCCCCCCCCCcEEeeeeeeeE
Q 016753          155 KWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAG-TDYYCVTKGVPCNSVPRRDKPRRVDLCYSSW  233 (383)
Q Consensus       155 ~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~-~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw  233 (383)
                      +||.++++.++||+++.+|++|+||+.|||+||+||||||.||+|+.| +.++|+++++.||++|+++++||+..|.|||
T Consensus        81 kWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~  160 (219)
T KOG2761|consen   81 KWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGW  160 (219)
T ss_pred             HHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEE
Confidence            999999999999998878999999999999999999999999999987 7899999999999999999999999999999


Q ss_pred             EEE-EeccCCCCCccceEEEEEEEEecCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 016753          234 CIR-PVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQR  293 (383)
Q Consensus       234 ~Ir-pv~~~~~~G~~tac~V~~~~~~DPGIP~~laN~~~~~g~p~~lkkL~~alrkY~~~r  293 (383)
                      +|+ ++.+.+++|  ++|+++|+++.+.|||.|++|+++++|||++++||++||++|++++
T Consensus       161 ~I~~~~~~~~~~~--~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~~  219 (219)
T KOG2761|consen  161 LIRVESRSGDEQG--CACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEKR  219 (219)
T ss_pred             EEEcccccCCCCc--cEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhcC
Confidence            999 665555444  4677777666666699999999999999999999999999999764

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms] Back     alignment and domain information
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>PF11274 DUF3074: Protein of unknown function (DUF3074) Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis Back     alignment and domain information
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily Back     alignment and domain information
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu Back     alignment and domain information
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>COG5637 Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins Back     alignment and domain information
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism] Back     alignment and domain information
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1ln1_A214 Crystal Structure Of Human Phosphatidylcholine Tran 8e-08
1ln2_A214 Crystal Structure Of Human Phosphatidylcholine Tran 1e-07
>pdb|1LN1|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer Protein In Complex With Dilinoleoylphosphatidylcholine Length = 214 Back     alignment and structure 
Iteration: 1

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 121 DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWI 180
           D KTG  +Y+   V ED +P L+ D + D  +R +WD    Y   L E    G  V+ W 
Sbjct: 46  DKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWE 102
Query: 181 RKFPFFCSDREYIIGRR 197
            K+PF  S+R+Y+  R+
Sbjct: 103 VKYPFPMSNRDYVYLRQ 119
>pdb|1LN2|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer Protein In Complex With Dilinoleoylphosphatidylcholine (Seleno-Met Protein) Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 7e-40
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 1e-29
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 4e-27
3qsz_A189 STAR-related lipid transfer protein; structural ge 1e-26
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 3e-23
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 3e-17
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 7e-17
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 2e-09
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Length = 214 Back     alignment and structure
 Score =  140 bits (353), Expect = 7e-40
 Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 19/219 (8%)

Query: 80  VVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVT 139
              E+  E    L +    G  W  +++ S  ++       D KTG  +Y+   V ED +
Sbjct: 8   FSEEQFWEACAELQQPALAGADWQLLVETSGISIYRL---LDKKTGLYEYKVFGVLEDCS 64

Query: 140 PELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIW 199
           P L+ D + D  +R +WD  +     L E    G  V+ W  K+PF  S+R+Y+  R+  
Sbjct: 65  PTLLADIYMDSDYRKQWDQYVK---ELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRR 121

Query: 200 KAGTD----YYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILF 255
               +    +  + +      +  R    RV     S  I     +         +V ++
Sbjct: 122 DLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKG-------SKVFMY 174

Query: 256 HHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQKQ 292
           + ++ G  IP  +     + G+   +K +    + Y K+
Sbjct: 175 YFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKK 213
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Length = 255 Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Length = 221 Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Length = 189 Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Length = 229 Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Length = 224 Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Length = 231 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Length = 258 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 100.0
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 100.0
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 100.0
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 100.0
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 100.0
3qsz_A189 STAR-related lipid transfer protein; structural ge 100.0
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 100.0
2pso_A237 STAR-related lipid transfer protein 13; alpha and 99.97
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 99.96
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 98.2
1t17_A148 Conserved hypothetical protein; beta-alpha-beta-BE 98.08
3tfz_A172 Cyclase; helix-GRIP, BET V1-like superfamily, bios 97.57
3tvq_A169 Multifunctional cyclase-dehydratase-3-O-methyl TR 97.34
3tl1_A159 WHIE ORF VI, polyketide cyclase; helix-GRIP fold, 97.24
2pcs_A162 Conserved protein; structural genomics, unknown fu 96.98
3ggn_A155 Uncharacterized protein DR_A0006; structural genom 96.89
2ns9_A157 Hypothetical protein APE2225; uncharacterized cons 96.37
3f08_A146 Uncharacterized protein Q6HG14; NESG Q6HG14_bachk 96.1
3p9v_A161 Uncharacterized protein; structural genomics, PSI- 95.78
2qpv_A156 Uncharacterized protein ATU1531; structural genomi 95.43
2le1_A151 Uncharacterized protein; structural genomics, nort 95.19
3p51_A160 Uncharacterized protein; structural genomics, PSI- 94.69
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 93.08
1icx_A155 Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, 91.29
1tw0_A157 Pathogenesis-related class 10 protein SPE-16; seve 90.59
3ijt_A155 SMU.440, putative uncharacterized protein; hypothe 89.22
2qim_A158 PR10.2B; trans-zeatin, cytokinin, plant hormones, 88.23
3kl1_A190 PYL2, putative uncharacterized protein AT2G26040; 85.12
3rt2_A183 Abscisic acid receptor PYL10; ABA-independent PP2C 84.75
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-39  Score=296.38  Aligned_cols=202  Identities=22%  Similarity=0.379  Sum_probs=176.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcCC-CCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchh
Q 016753           77 QSNVVTEEDLEHLWRLAEMKD-GGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRS  154 (383)
Q Consensus        77 ~~~~vt~~Df~~~~~~~e~~~-~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~  154 (383)
                      ..+.||++||+++++++++.. ++++|+++++    .++++||+| .+++|+..||++++|+|+++++|+++++|.++|+
T Consensus         4 ~~~~~~~~~f~~~~~~l~~~~~~~~~W~~~~~----~~~v~v~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~   79 (214)
T 1ln1_A            4 AAGSFSEEQFWEACAELQQPALAGADWQLLVE----TSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRK   79 (214)
T ss_dssp             ----CCHHHHHHTTHHHHSCCCTTTTCEEEEE----ETTEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHH
T ss_pred             ccCccCHHHHHHHHHHhccCCCCCCCcEEEEE----CCCeEEEEeccCCCCcEEEEEEEEECCCCHHHHHHHHcCHHHHH
Confidence            345799999999999998764 4558999999    458999999 6778999999999998899999999999999999


Q ss_pred             hHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe---eCC-EEEEEEcccCCCCCCCCCCcEEeeeee
Q 016753          155 KWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK---AGT-DYYCVTKGVPCNSVPRRDKPRRVDLCY  230 (383)
Q Consensus       155 ~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~---~~~-~~~iv~ksv~hp~~P~~~g~VRV~~~~  230 (383)
                      +||+++.+.++|+.   +|+.++|++.++|||+++||||+.|.+..   +|. .++++++|++||.+|+++++||+..+.
T Consensus        80 ~Wd~~~~~~~vle~---~~~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~  156 (214)
T 1ln1_A           80 QWDQYVKELYEQEC---NGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYK  156 (214)
T ss_dssp             HHCTTEEEEEEEEE---TTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEE
T ss_pred             HHHHHHhhEEEecc---CCCEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEE
Confidence            99999999999975   45789999999999999999999876432   333 467889999999999999999999999


Q ss_pred             eeEEEEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 016753          231 SSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQKQ  292 (383)
Q Consensus       231 Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY~~~  292 (383)
                      ++|+|+|..    +|   .|+|+|++|.|||  ||.|++|.+++++++.++++|++++++|.++
T Consensus       157 ~~~~i~p~~----~~---~t~v~~~~~~Dp~G~iP~~l~n~~~~~~~~~~l~~l~k~~~~y~~~  213 (214)
T 1ln1_A          157 QSLAIESDG----KK---GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKK  213 (214)
T ss_dssp             EEEEEEECS----SS---SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC---
T ss_pred             EEEEEecCC----CC---ceEEEEEEEECCCCcccHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence            999999984    22   2999999999999  9999999999999999999999999999864
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Back     alignment and structure
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 Back     alignment and structure
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Back     alignment and structure
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Back     alignment and structure
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Back     alignment and structure
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 Back     alignment and structure
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Back     alignment and structure
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 Back     alignment and structure
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A Back     alignment and structure
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Back     alignment and structure
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8 Back     alignment and structure
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Back     alignment and structure
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Back     alignment and structure
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Back     alignment and structure
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Back     alignment and structure
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A Back     alignment and structure
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Back     alignment and structure
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Back     alignment and structure
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d1ln1a_203 d.129.3.2 (A:) Phosphatidylcholine transfer protei 2e-29
d1em2a_214 d.129.3.2 (A:) Lipid transport domain of Mln64 {Hu 3e-21
d1jssa_199 d.129.3.2 (A:) Cholesterol-regulated Start protein 1e-13
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 2e-29
 Identities = 46/215 (21%), Positives = 84/215 (39%), Gaps = 20/215 (9%)

Query: 82  TEEDLEHLW-RLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTP 140
           +EE        L +    G  W  +++ S  ++       D KTG  +Y+   V ED +P
Sbjct: 2   SEEQFWEACAELQQPALAGADWQLLVETSGISIYRL---LDKKTGLYEYKVFGVLEDCSP 58

Query: 141 ELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK 200
            L+ D + D  +R +WD    Y   L E    G  V+ W  K+PF  S+R+Y+  R+   
Sbjct: 59  TLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRD 115

Query: 201 AGTD----YYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFH 256
              +    +  + +      +  R    RV     S  I     +         +V +++
Sbjct: 116 LDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKG-------SKVFMYY 168

Query: 257 HEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVY 289
            ++ G  IP  +     + G+   +K +    + Y
Sbjct: 169 FDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNY 203
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Length = 199 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 100.0
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 100.0
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 99.97
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 99.96
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 98.21
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 98.03
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 97.93
d2ns9a1147 Hypothetical protein APE2225 {Aeropyrum pernix [Ta 97.3
d2b79a1137 Hypothetical protein SMU440 {Streptococcus mutans 96.93
d3cnwa1138 Uncharacterized protein XoxI {Bacillus cereus [Tax 96.81
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 96.43
d1xfsa_165 Hypothetical protein NE0264 {Nitrosomonas europaea 84.66
d1xuva_163 Hypothetical protein MM0500 {Methanosarcina mazei 81.82
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-36  Score=272.65  Aligned_cols=195  Identities=22%  Similarity=0.382  Sum_probs=172.3

Q ss_pred             CCHHHHHHHHHHHhcCC-CCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhh
Q 016753           81 VTEEDLEHLWRLAEMKD-GGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDD  158 (383)
Q Consensus        81 vt~~Df~~~~~~~e~~~-~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~  158 (383)
                      ||++++++++..+++.. ++++|++..+    +++++||+| .+++++..||++++|+|++++++++++.|.++|++||+
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~W~~~~~----~~gv~vy~~~~~~~~~~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~   76 (203)
T d1ln1a_           1 FSEEQFWEACAELQQPALAGADWQLLVE----TSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ   76 (203)
T ss_dssp             CCHHHHHHTTHHHHSCCCTTTTCEEEEE----ETTEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCT
T ss_pred             CCHHHHHHHHHHhcCcccCCCCCEEEEe----cCCEEEEEEecCCCCcEEEEEEEEEcCCCHHHHHHHHcCHhHhhhhcc
Confidence            68999999999888764 4568999999    458999999 56789999999999988999999999999999999999


Q ss_pred             cCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe--e--CCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEE
Q 016753          159 MLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK--A--GTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWC  234 (383)
Q Consensus       159 ~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~--~--~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~  234 (383)
                      ++.+  +++.. .+++.++|++.++|||+++||||+.|+...  +  ...+++++.++.||.+|+.+|+||+..+.++|+
T Consensus        77 ~~~~--~~~~~-~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~  153 (203)
T d1ln1a_          77 YVKE--LYEQE-CNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLA  153 (203)
T ss_dssp             TEEE--EEEEE-ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEE
T ss_pred             cceE--EEEEc-cCCcEEEEEEcccccccCCceEEEEEEEEEccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEE
Confidence            8864  34433 356789999999999999999999877653  2  245778899999999999999999999999999


Q ss_pred             EEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 016753          235 IRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVY  289 (383)
Q Consensus       235 Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY  289 (383)
                      |+|+.+    |   .|+|+|+.|.|||  ||.|++|+++++.++++|++|++++++|
T Consensus       154 l~~~~~----~---~t~v~~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~l~k~~~~y  203 (203)
T d1ln1a_         154 IESDGK----K---GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNY  203 (203)
T ss_dssp             EEECSS----S---SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             EEecCC----C---cEEEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999852    2   2999999999999  9999999999999999999999999987
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure