Citrus Sinensis ID: 016764

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSST
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHcccccHHHHHHccccccccccccccccccEEcccccccccccccccccHHHEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHcccccHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MNLNANMLQAQRsrfnsktfsltiskhnipvlprnrslsfstswcpvhfrsishsnlkfgssrnfvtnsvsenisgpfdqdpdrnyvtesnqVLNQEFSLVNILKqsnsflphVVLGSTMlalvfppsftwftaryyapALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIsvsvfglptpigAGIMLVSCVsgaqlsnyatfltdpplaplsIVMTSLSTATAVFVTPLLSLLLIgkrlpvdvkgMVSSILQIVVVPIAaglllnrffpricnairpflpplsVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSST
Flexible Loop (DISEMBL)
MNLNANMLQAQRSRFNSKTFSLTiskhnipvlprnrSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENisgpfdqdpdRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRtlsyetgvmFLYNKILYSSST
Low Complexity Region (SEG)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGltillliitFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSST
Disordered region (IsUnstruct)
*******************FSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFG******************************NQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILY****
Disordered Region (DISOPRED)
*********AQRSRFNSKTFSLTISK*************************************************************************LVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS*
Disordered Region (DISEMBL)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSST
Disordered Region (DISPRO)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYS***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
Q8VYY4	409	Probable sodium/metabolit	yes	no	0.801	0.750	0.706	1e-122
Q650U0	401	Probable sodium/metabolit	yes	no	0.793	0.758	0.689	1e-119
B8BDK4	401	Probable sodium/metabolit	N/A	no	0.793	0.758	0.689	1e-119
F4JPW1	407	Probable sodium/metabolit	no	no	0.890	0.837	0.628	1e-118
Q6K739	423	Probable sodium/metabolit	no	no	0.621	0.562	0.444	1e-51
Q8RXE8	431	Probable sodium/metabolit	no	no	0.668	0.593	0.414	9e-49
Q1EBV7	409	Sodium/pyruvate cotranspo	no	no	0.827	0.775	0.283	3e-36
Q5VRB2	419	Probable sodium/metabolit	no	no	0.684	0.625	0.306	2e-32
Q93YR2	401	Probable sodium/metabolit	no	no	0.817	0.780	0.283	3e-28
Q7XVB3	406	Probable sodium/metabolit	no	no	0.650	0.613	0.312	1e-21

>sp|Q8VYY4|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1

 Score =  439 bits (1129), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/313 (70%), Positives = 260/313 (83%), Gaps = 6/313 (1%)

Query: 58  KFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLG 117
           + G SRN      S+N S     DP      +  +V+ +  S+V+ +K++NS LPHVVL 
Sbjct: 54  QVGGSRNLWRRYASDNFSE-MGLDPG----ADPFKVIEKP-SIVDRMKKANSILPHVVLA 107

Query: 118 STMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177
           ST+LAL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++V
Sbjct: 108 STILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLV 167

Query: 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLS 237
           KP+LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLS
Sbjct: 168 KPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLS 227

Query: 238 TATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFL 297
           TATAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFL
Sbjct: 228 TATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFL 287

Query: 298 PPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDV 357
           P LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D 
Sbjct: 288 PILSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDA 347

Query: 358 KALQRTLSYETGV 370
           KA+QRTLSYETG+
Sbjct: 348 KAMQRTLSYETGM 360

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/306 (68%), Positives = 255/306 (83%), Gaps = 2/306 (0%)

Query: 67  TNSVSENISGPFDQDP--DRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALV 124
           +  V  + SG F++D   D + +     V   +  L+ ILK +N+ +PHVVLGST+LALV
Sbjct: 49  SGRVWASASGSFEKDRIGDDDVLASPQIVEESKVDLLKILKSANTIIPHVVLGSTILALV 108

Query: 125 FPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 184
           +PPSFTWFT RYYAPALGFLMFAVGVNSS KDFIEA +RP AI AGYVGQF++KP LG++
Sbjct: 109 YPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKPFLGFL 168

Query: 185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 244
           FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTATAVFV
Sbjct: 169 FGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFV 228

Query: 245 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 304
           TP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPPLSV V
Sbjct: 229 TPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPPLSVFV 288

Query: 305 TACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 364
           TA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKALQRT+
Sbjct: 289 TALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKALQRTV 348

Query: 365 SYETGV 370
           S+ETG+
Sbjct: 349 SFETGM 354

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BDK4|BASS5_ORYSI Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. indica GN=BASS5 PE=3 SV=1

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/306 (68%), Positives = 255/306 (83%), Gaps = 2/306 (0%)

Query: 67  TNSVSENISGPFDQDP--DRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALV 124
           +  V  + SG F++D   D + +     V   +  L+ ILK +N+ +PHVVLGST+LALV
Sbjct: 49  SGRVWASASGSFEKDRIGDDDVLASPQIVEESKVDLLKILKSANTIIPHVVLGSTILALV 108

Query: 125 FPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 184
           +PPSFTWFT RYYAPALGFLMFAVGVNSS KDFIEA +RP AI AGYVGQF++KP LG++
Sbjct: 109 YPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKPFLGFL 168

Query: 185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 244
           FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTATAVFV
Sbjct: 169 FGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFV 228

Query: 245 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 304
           TP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPPLSV V
Sbjct: 229 TPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPPLSVFV 288

Query: 305 TACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 364
           TA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKALQRT+
Sbjct: 289 TALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKALQRTV 348

Query: 365 SYETGV 370
           S+ETG+
Sbjct: 349 SFETGM 354

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. indica (taxid: 39946)

>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1

 Score =  425 bits (1092), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/353 (62%), Positives = 281/353 (79%), Gaps = 12/353 (3%)

Query: 25  SKHNIPVLPRNRS--LSFSTSWCPVHFRSISHSNLKFGSSRNF--VTNSVSENISGPFDQ 80
           S+H + + PRN S  L+F ++    +F   S S+L    S +F   +N +S+N       
Sbjct: 14  SQHRL-LQPRNYSYALAFHSTRRVANFPRNSFSSLG-SCSVDFPLRSNPISQNSK---SI 68

Query: 81  DPDRNYVTES--NQVLNQEFS-LVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYY 137
            P R YV+ES  N++ +++ S ++  LKQ+ SF+PH +L ST+LALV+PPSFTWF  RY+
Sbjct: 69  HPWRRYVSESDSNELYHKKVSSIMETLKQAYSFIPHGILLSTILALVYPPSFTWFKPRYF 128

Query: 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 197
            P LGF+MFAVG+NS+E+DF+EA KRP AIFAGY+GQ+++KP+LGYIFG I+VS+F LPT
Sbjct: 129 VPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPT 188

Query: 198 PIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL 257
            IGAGIMLVSCVSGAQLSNY TFLTDP LA LSIVMTS+STATAV VTP+LSLLLIGK+L
Sbjct: 189 SIGAGIMLVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKL 248

Query: 258 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI 317
           PVDV GM+SSILQ+V+ PIAAGLLLNR FPR+ NAI+PFLP L+V+  +CC+GAPLA+NI
Sbjct: 249 PVDVFGMISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSCCIGAPLALNI 308

Query: 318 ESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
           +S++SPFG TIL L+ITFHL AFVAGY  TG  F++A DVKALQRT+SYETG+
Sbjct: 309 DSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGM 361

Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/245 (44%), Positives = 163/245 (66%), Gaps = 7/245 (2%)

Query: 126 PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 185
           P +F+W +  YYAPALG +M ++G+  S  DF  AFKRP  +  GY+ Q++VKP++G + 
Sbjct: 123 PATFSWVSKEYYAPALGGIMLSIGIKLSIDDFALAFKRPVPLTIGYMAQYIVKPLMGVLI 182

Query: 186 GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 245
                  FG+P+   AG +L  CVSGAQLS+YA+FL+   +A LSI++TS ST ++V VT
Sbjct: 183 A----RAFGMPSAFFAGFVLTCCVSGAQLSSYASFLSKGDVA-LSILLTSCSTISSVVVT 237

Query: 246 PLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT 305
           P+L+ LLIG  +PVD   M  SILQ+V+VP+  GLLLN +   + N I+P +P +++L T
Sbjct: 238 PVLTGLLIGSVVPVDGIAMAKSILQVVLVPVTLGLLLNTYAKAVVNVIQPVMPFVAMLCT 297

Query: 306 ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS 365
           + C+G+PLAIN   ++S  G  +LL I+TFH++AF+ GY ++ L      +   + RT+S
Sbjct: 298 SLCIGSPLAINRSKILSSEGFLLLLPIVTFHIAAFIVGYWISKLPMLRQEE--PVCRTIS 355

Query: 366 YETGV 370
             TG+
Sbjct: 356 VCTGM 360

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1

 Score =  194 bits (493), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 167/263 (63%), Gaps = 7/263 (2%)

Query: 108 NSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI 167
           ++ LP VV  + + AL +PPSFTW +   YAPALG +M ++G+  S  DF  AFKRP  +
Sbjct: 112 SALLPFVVALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPL 171

Query: 168 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 227
             G+V Q+V+KP+LG +      + FG+P    AG +L  CV+GAQLS+YA+ L+   +A
Sbjct: 172 SVGFVAQYVLKPLLGVLVA----NAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA 227

Query: 228 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFP 287
            +SI++TS +T  +V  TPLLS LLIG  +PVD   M  SILQ+V+VPI  GL+LN +  
Sbjct: 228 -MSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAK 286

Query: 288 RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT 347
            +   ++P +P ++++ T+ C+G+PL+IN   ++S  GL +++ I+TFH  AF  GY  +
Sbjct: 287 PVVTLLQPVMPFVAMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFS 346

Query: 348 GLAFAEAHDVKALQRTLSYETGV 370
            +      +   + RT+S  TG+
Sbjct: 347 KIPGLRQEE--EVSRTISLCTGM 367

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1

 Score =  152 bits (385), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 179/370 (48%), Gaps = 53/370 (14%)

Query: 31  VLPRNRSLS---FSTSWCPVHFRSISHSN---------------------------LKFG 60
           +LP +  LS    +TSW P   R+ +H +                           L+  
Sbjct: 7   ILPTDGRLSQCRINTSWVPSTTRTQTHLDFPKLVSVSNSGISLRIQNSKPISPVFALEAT 66

Query: 61  SSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTM 120
           SSR  V  + +  +SG   +   +         L+Q   ++ +L    +  P  V+  T+
Sbjct: 67  SSRRVVCKAAA-GVSGDLPESTPKE--------LSQYEKIIELL---TTLFPLWVILGTL 114

Query: 121 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPI 180
           + +  P   TW     +   LGFLM ++G+  + +DF    + P  +  G++ Q+++KPI
Sbjct: 115 VGIFKPSLVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYMIKPI 174

Query: 181 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 240
           LG++          L  P+  G++LVSC  G Q SN AT+++   +A LS++MT+ ST  
Sbjct: 175 LGFLIAM----TLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA-LSVLMTTCSTIG 229

Query: 241 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 300
           A+ +TPLL+ LL G+ +PVD  G+  S  Q+V+VP   G+L N FFP+  + I    P +
Sbjct: 230 AIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIGVLANEFFPKFTSKIITVTPLI 289

Query: 301 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 360
            V++T     +P+   +  V+   G  ++L +   H +AF  GY ++  +F E+      
Sbjct: 290 GVILTTLLCASPIG-QVADVLKTQGAQLILPVALLHAAAFAIGYWISKFSFGESTS---- 344

Query: 361 QRTLSYETGV 370
            RT+S E G+
Sbjct: 345 -RTISIECGM 353

Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 149/277 (53%), Gaps = 15/277 (5%)

Query: 95  NQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSE 154
           NQ   +V +L    +  P  V+  T++ +  P   TW     +   LGFLM ++G+  + 
Sbjct: 101 NQYEKIVELL---TTLFPVWVILGTIIGIYKPSMVTWLETDLFTVGLGFLMLSMGLTLTF 157

Query: 155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 214
           +DF    + P  +  G++ Q+++KP+LG+           L  P+  G++LVSC  G Q 
Sbjct: 158 EDFRRCMRNPWTVGVGFLAQYLIKPMLGFAIAM----TLKLSAPLATGLILVSCCPGGQA 213

Query: 215 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVV 274
           SN AT+++   +A LS++MT+ ST  A+ +TPLL+ LL G+ +PVD  G+  S  Q+V++
Sbjct: 214 SNVATYISKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLL 272

Query: 275 PIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIIT 334
           P   G+L + +FP+    I    P + VL+T     +P+   +  V+   G  +++ +  
Sbjct: 273 PTIVGVLAHEYFPKFTERIISITPLIGVLLTTLLCASPIG-QVSEVLKAQGGQLIIPVAL 331

Query: 335 FHLSAFVAGYVVTGL-AFAEAHDVKALQRTLSYETGV 370
            H++AF  GY ++ + +F E+       RT+S E G+
Sbjct: 332 LHVAAFALGYWLSKVSSFGESTS-----RTISIECGM 363

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 160/335 (47%), Gaps = 22/335 (6%)

Query: 46  PVHFRSISHSNLKFGSSRNFVTNSVSENI-----SGPFDQDP-----DRNYVTESNQVLN 95
           P+H R+IS S L +  S   ++      +        FD  P       +  TE  +   
Sbjct: 28  PLHLRTISCSRLSYSPSSREISLKTQSTVPISCRRSRFDFVPRCGISSNDLPTEKKKSFG 87

Query: 96  QEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEK 155
           +    V     S +F   V LG  +L L+ P +F W T  +    L   M  +G+  +  
Sbjct: 88  EWVEFVG-EAVSTAFPIWVSLG-CLLGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLD 145

Query: 156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS 215
           D   A   P  +FAG++ Q+ V P+  +    +      LP    AG++LV C  G   S
Sbjct: 146 DLRGALSMPKELFAGFLLQYSVMPLSAFFVSKL----LNLPPHYAAGLILVGCCPGGTAS 201

Query: 216 NYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVP 275
           N  T++    +A LS++MT+ ST +AV +TPLL+  L  + + VD  G++ S LQ+V++P
Sbjct: 202 NIVTYIARGNVA-LSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTLQVVLLP 260

Query: 276 IAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITF 335
           + AG  LN++F ++   + P +PP++V   A   G  +  N  +++   G  ++L     
Sbjct: 261 VLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNASAILMS-GKQVVLASCLL 319

Query: 336 HLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
           H+S F+ GY+ + +   +     A  RT+S E G+
Sbjct: 320 HISGFLFGYLFSRILGIDV----ASSRTISIEVGM 350

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 134/259 (51%), Gaps = 10/259 (3%)

Query: 112 PHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY 171
           P  V  +  +AL  PP+F W +       + F M  +G+  +  D   A   P  + +G+
Sbjct: 107 PVWVASACAVALWRPPAFLWVSPMAQIVGISFTMLGMGMTLTLDDLKTALLMPKELASGF 166

Query: 172 VGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSI 231
           + Q+ V P+ G++   +      LP+   AG++LVSC  G   SN  T+L    +A LS+
Sbjct: 167 LLQYSVMPLSGFLISKL----LNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVA-LSV 221

Query: 232 VMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN 291
           +MT+ ST  A F+TPLL+  L G+ + VD  G+  S  Q+V+ P+  G LLN++   +  
Sbjct: 222 LMTAASTFAAAFLTPLLTSKLAGQYVAVDPMGLFVSTSQVVLAPVLLGALLNQYCNGLVQ 281

Query: 292 AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAF 351
            + P +P ++V   A   G  +A N  +++S  GL +++ +   H S F  GYV   L+ 
Sbjct: 282 LVSPLMPFIAVATVAVLCGNAIAQNASAILSS-GLQVVMSVCWLHASGFFFGYV---LSR 337

Query: 352 AEAHDVKALQRTLSYETGV 370
               D+ +  RT+S E G+
Sbjct: 338 TIGIDISS-SRTISIEVGM 355

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
255537151	413	sodium-bile acid cotransporter, putative	0.814	0.755	0.808	1e-140
359497736	356	PREDICTED: uncharacterized sodium-depend	0.838	0.901	0.745	1e-133
449460499	420	PREDICTED: probable sodium/metabolite co	0.906	0.826	0.653	1e-129
449494361	420	PREDICTED: probable sodium/metabolite co	0.906	0.826	0.650	1e-129
224074737	317	bile acid:Na+ symporter family protein [	0.710	0.858	0.849	1e-129
147773542	352	hypothetical protein VITISV_011475 [Viti	0.720	0.784	0.815	1e-127
297799724	406	bile acid:sodium symporter family protei	0.791	0.746	0.721	1e-122
18416020	409	putative sodium-bile acid cotransporter	0.801	0.750	0.706	1e-120
115480215	401	Os09g0520600 [Oryza sativa Japonica Grou	0.793	0.758	0.689	1e-117
297809511	409	bile acid:sodium symporter family protei	0.900	0.843	0.6	1e-117

>gi|255537151|ref|XP_002509642.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223549541|gb|EEF51029.1| sodium-bile acid cotransporter, putative [Ricinus communis]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/313 (80%), Positives = 280/313 (89%), Gaps = 1/313 (0%)

Query: 59  FGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQE-FSLVNILKQSNSFLPHVVLG 117
           F S++   +  +SE +S  FDQDP  N V + N++  QE FSL+NILK+SNS LPHVVL 
Sbjct: 54  FTSTKTQFSICLSEKLSDSFDQDPSLNIVNKHNKIFEQEEFSLINILKKSNSLLPHVVLA 113

Query: 118 STMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177
           ST+LALV+PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+EAFKRP+AIFAGY+GQF+V
Sbjct: 114 STLLALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFVEAFKRPSAIFAGYLGQFIV 173

Query: 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLS 237
           KPILGYIFG ISVSVF LPTPIGAGIMLVSCVSGAQLSNYATFLTDPP+APLSIVMTSLS
Sbjct: 174 KPILGYIFGIISVSVFNLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPMAPLSIVMTSLS 233

Query: 238 TATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFL 297
           TATAVFVTPLLSLLLIGKRLPVDV GMVSSILQIVV PIAAGLLLNRF P I NAIRPFL
Sbjct: 234 TATAVFVTPLLSLLLIGKRLPVDVTGMVSSILQIVVAPIAAGLLLNRFLPWISNAIRPFL 293

Query: 298 PPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDV 357
           PPLSVLVTACCVGAPLAIN++SV+SPFG TIL LII+FHL AFVAGYV+TGL F +A D+
Sbjct: 294 PPLSVLVTACCVGAPLAINVKSVISPFGATILSLIISFHLLAFVAGYVLTGLVFPKAPDL 353

Query: 358 KALQRTLSYETGV 370
           KALQRT+S+ETG+
Sbjct: 354 KALQRTMSFETGM 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497736|ref|XP_002274965.2| PREDICTED: uncharacterized sodium-dependent transporter yocS-like, partial [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/322 (74%), Positives = 278/322 (86%), Gaps = 1/322 (0%)

Query: 50  RSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQE-FSLVNILKQSN 108
           R+  + +L   S+R  +T  VS+ +S   + D D +Y  E +Q+  Q+  S+ +ILK +N
Sbjct: 9   RTDLNLSLTVASTRFSLTRCVSKKLSESLEPDQDPSYEPEPSQMRGQKKASITDILKGAN 68

Query: 109 SFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIF 168
             LPHVVL ST++AL++PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+EAF RP AIF
Sbjct: 69  GILPHVVLASTLVALIYPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFLEAFNRPMAIF 128

Query: 169 AGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAP 228
           AGYVGQFVVKP+LGY+FGTI+V++FGLPT IGAGIML SCVSGAQLSNYATFLTDPP+AP
Sbjct: 129 AGYVGQFVVKPLLGYLFGTIAVTIFGLPTAIGAGIMLTSCVSGAQLSNYATFLTDPPMAP 188

Query: 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 288
           LSIVMTSLSTATAVFVTP+LSLLLIGKRLPVDVKGMVSSI QIVV PIAAGLLLNRF PR
Sbjct: 189 LSIVMTSLSTATAVFVTPILSLLLIGKRLPVDVKGMVSSISQIVVAPIAAGLLLNRFLPR 248

Query: 289 ICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTG 348
           ICNAIRPFLPPLSVLVTACCVG+PLAIN+ESV+SPFG+T+ +LII FH +AFVAGY ++G
Sbjct: 249 ICNAIRPFLPPLSVLVTACCVGSPLAINVESVLSPFGVTVSMLIIAFHFTAFVAGYGLSG 308

Query: 349 LAFAEAHDVKALQRTLSYETGV 370
           L F EA DVKALQRTLS+ETG+
Sbjct: 309 LVFHEAPDVKALQRTLSFETGM 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460499|ref|XP_004147983.1| PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic-like [Cucumis sativus]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/381 (65%), Positives = 285/381 (74%), Gaps = 34/381 (8%)

Query: 3   LNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSS 62
           L  N++Q  R   +   F  +IS  N                     +SIS    +F   
Sbjct: 8   LGKNLMQIHRLHRSQLDFPTSISSRN---------------------QSISGLFHRFPPQ 46

Query: 63  RNFVTNSVSENISGPFDQDPDRNYV------------TESNQVLNQE-FSLVNILKQSNS 109
            N V+   S     P+  D  R  +                 +++Q+  + V ILKQSNS
Sbjct: 47  INGVSVRCSNTFHSPYPLDVYRTVLLNLCGWIVILLAVRQRLIIDQKKTTFVEILKQSNS 106

Query: 110 FLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFA 169
            LPHVVL ST++AL+FPPSF WFT+RYYAPALGFLMFAVGVNSSEKDF+EAFK+PAAIFA
Sbjct: 107 LLPHVVLASTLVALIFPPSFAWFTSRYYAPALGFLMFAVGVNSSEKDFLEAFKQPAAIFA 166

Query: 170 GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPL 229
           GYVGQF VKP+LGY+FGTI+V++FGLPT IGAGIMLVSCVSGAQLS+YATFLTDP LAPL
Sbjct: 167 GYVGQFFVKPLLGYLFGTIAVTLFGLPTAIGAGIMLVSCVSGAQLSSYATFLTDPSLAPL 226

Query: 230 SIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI 289
           S+VMTSLSTATAV VTP LSLLLIGKRLPVDVKGM+SSI QIVV PIAAGLLLNRFFPRI
Sbjct: 227 SVVMTSLSTATAVVVTPFLSLLLIGKRLPVDVKGMISSITQIVVAPIAAGLLLNRFFPRI 286

Query: 290 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGL 349
           C AIRPFLPPLSVLVTACCVGAPLAINI +V+SPFGL+ILLLI+ FHLSAF+AGY +TGL
Sbjct: 287 CEAIRPFLPPLSVLVTACCVGAPLAININAVISPFGLSILLLIVAFHLSAFIAGYSLTGL 346

Query: 350 AFAEAHDVKALQRTLSYETGV 370
           AF  + DVKALQRTLSYETG+
Sbjct: 347 AFHGSPDVKALQRTLSYETGM 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494361|ref|XP_004159525.1| PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic-like [Cucumis sativus]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/381 (65%), Positives = 284/381 (74%), Gaps = 34/381 (8%)

Query: 3   LNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSS 62
           L  N++Q  R   +   F  +IS  N                     +SIS    +F   
Sbjct: 8   LGKNLMQIHRLHRSQLDFPTSISSRN---------------------QSISGLFHRFPPQ 46

Query: 63  RNFVTNSVSENISGPFDQDPDRNYV------------TESNQVLNQE-FSLVNILKQSNS 109
            N V+   S     P+  D  R  +                 +++Q+  + V ILKQSNS
Sbjct: 47  INGVSVRCSNTFHSPYPLDVYRTVLLNLCGWIVILLAVRQRLIIDQKKTTFVEILKQSNS 106

Query: 110 FLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFA 169
            LPHVVL ST++AL+FPPSF WFT+RYYAPALGFLMFAVGVNSSEKDF+EAFK+PAAIFA
Sbjct: 107 LLPHVVLASTLVALIFPPSFAWFTSRYYAPALGFLMFAVGVNSSEKDFLEAFKQPAAIFA 166

Query: 170 GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPL 229
           GYVGQF VKP+LGY+FGTI+V++FGLPT IGAGIMLVSCVSGAQLS+YATFLTDP LAPL
Sbjct: 167 GYVGQFFVKPLLGYLFGTIAVTLFGLPTAIGAGIMLVSCVSGAQLSSYATFLTDPSLAPL 226

Query: 230 SIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI 289
           S+VMTSLSTATAV VTP LSLLLIGKRLPVDVKGM+SSI QIVV PIAAGLLLNRFFPRI
Sbjct: 227 SVVMTSLSTATAVVVTPFLSLLLIGKRLPVDVKGMISSITQIVVAPIAAGLLLNRFFPRI 286

Query: 290 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGL 349
           C AIRPFLPPLSVLVTACCVGAPLAINI +V+SPFGL+ILLLI+ FHLSAF+AGY +TGL
Sbjct: 287 CEAIRPFLPPLSVLVTACCVGAPLAININAVISPFGLSILLLIVAFHLSAFIAGYSLTGL 346

Query: 350 AFAEAHDVKALQRTLSYETGV 370
           AF  + DVK LQRTLSYETG+
Sbjct: 347 AFHGSPDVKGLQRTLSYETGM 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074737|ref|XP_002304447.1| bile acid:Na+ symporter family protein [Populus trichocarpa] gi|222841879|gb|EEE79426.1| bile acid:Na+ symporter family protein [Populus trichocarpa]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/272 (84%), Positives = 250/272 (91%)

Query: 99  SLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFI 158
           S+V++L+QSNS LPH+VL ST+LALV PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+
Sbjct: 1   SIVDMLEQSNSLLPHIVLASTLLALVHPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFL 60

Query: 159 EAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA 218
           EAF RPAAI AGYVGQFVVKP LGY+FG ISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA
Sbjct: 61  EAFNRPAAILAGYVGQFVVKPSLGYLFGIISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA 120

Query: 219 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAA 278
           TFLTDPP+APLSIVMTS+STATAVFVTPLLSLLLIGKRLPVDVKGMVSSI+QIVV PIAA
Sbjct: 121 TFLTDPPMAPLSIVMTSMSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSIMQIVVAPIAA 180

Query: 279 GLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLS 338
           GLLLNR FP+I   IRPFLPPLSVLVTACCVGAPLAIN++SVMSPFG+TI+ LII FHLS
Sbjct: 181 GLLLNRLFPQISGVIRPFLPPLSVLVTACCVGAPLAINVDSVMSPFGVTIVSLIIAFHLS 240

Query: 339 AFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
           AFV GY  TG  F +A D+KALQRTLSYETG+
Sbjct: 241 AFVVGYYFTGFVFHKASDLKALQRTLSYETGM 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773542|emb|CAN76453.1| hypothetical protein VITISV_011475 [Vitis vinifera]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/277 (81%), Positives = 256/277 (92%), Gaps = 1/277 (0%)

Query: 95  NQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSE 154
            ++ S+ +ILK +N  LPHVVL ST++AL++PPSFTWFT RYYAPALGFLMFAVGVNSSE
Sbjct: 4   QKKASIXDILKGANGILPHVVLASTLVALIYPPSFTWFTTRYYAPALGFLMFAVGVNSSE 63

Query: 155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 214
           KDF+EAF RP AIFAGYVGQFVVKP+LGY+FGTI+V++FGLPT IGAGIML SCVSGAQL
Sbjct: 64  KDFLEAFNRPMAIFAGYVGQFVVKPLLGYLFGTIAVTIFGLPTAIGAGIMLTSCVSGAQL 123

Query: 215 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVV 274
           SNYATFLTDPP+APLSIVMTSLSTATAVFVTP+LSLLLIGKRLPVDVKGMVSSILQIVV 
Sbjct: 124 SNYATFLTDPPMAPLSIVMTSLSTATAVFVTPILSLLLIGKRLPVDVKGMVSSILQIVVA 183

Query: 275 PIAAGLLLNRFF-PRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLII 333
           PIAAGLLLNR+F PRICNAIRPFLPPLSVLVTACCVG+PLAIN+ESV+SPFG+T+ +LII
Sbjct: 184 PIAAGLLLNRWFLPRICNAIRPFLPPLSVLVTACCVGSPLAINVESVLSPFGVTVSMLII 243

Query: 334 TFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
            FH +AFVAGY ++GL F EA DVKA+QRTLS+ETG+
Sbjct: 244 AFHFTAFVAGYGLSGLVFHEAPDVKAIQRTLSFETGM 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799724|ref|XP_002867746.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297313582|gb|EFH44005.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/309 (72%), Positives = 261/309 (84%), Gaps = 6/309 (1%)

Query: 62  SRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTML 121
           SRN      S++ S     DP+ N V    +V+++  S+V+ +K++NS LPHVVL ST+L
Sbjct: 55  SRNLWRRYASDHFSE-MGLDPEANSV----KVIDKA-SIVDTMKKANSILPHVVLASTIL 108

Query: 122 ALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL 181
           AL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++VKPIL
Sbjct: 109 ALLYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKPIL 168

Query: 182 GYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA 241
           G+IFG  +VSVF LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLSTATA
Sbjct: 169 GFIFGLAAVSVFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTATA 228

Query: 242 VFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS 301
           V VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFLP LS
Sbjct: 229 VLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPILS 288

Query: 302 VLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQ 361
           VL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D KA+Q
Sbjct: 289 VLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQ 348

Query: 362 RTLSYETGV 370
           RTLSYETG+
Sbjct: 349 RTLSYETGM 357

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416020|ref|NP_567671.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana] gi|75161555|sp|Q8VYY4.1|BASS6_ARATH RecName: Full=Probable sodium/metabolite cotransporter BASS6, chloroplastic; AltName: Full=Bile acid transporter 4; AltName: Full=Bile acid-sodium symporter family protein 6; Flags: Precursor gi|17529350|gb|AAL38902.1| unknown protein [Arabidopsis thaliana] gi|21436155|gb|AAM51324.1| unknown protein [Arabidopsis thaliana] gi|21618116|gb|AAM67166.1| unknown [Arabidopsis thaliana] gi|332659265|gb|AEE84665.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/313 (70%), Positives = 260/313 (83%), Gaps = 6/313 (1%)

Query: 58  KFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLG 117
           + G SRN      S+N S     DP      +  +V+ +  S+V+ +K++NS LPHVVL 
Sbjct: 54  QVGGSRNLWRRYASDNFSE-MGLDPG----ADPFKVIEKP-SIVDRMKKANSILPHVVLA 107

Query: 118 STMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177
           ST+LAL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++V
Sbjct: 108 STILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLV 167

Query: 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLS 237
           KP+LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLS
Sbjct: 168 KPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLS 227

Query: 238 TATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFL 297
           TATAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFL
Sbjct: 228 TATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFL 287

Query: 298 PPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDV 357
           P LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D 
Sbjct: 288 PILSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDA 347

Query: 358 KALQRTLSYETGV 370
           KA+QRTLSYETG+
Sbjct: 348 KAMQRTLSYETGM 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115480215|ref|NP_001063701.1| Os09g0520600 [Oryza sativa Japonica Group] gi|75114195|sp|Q650U0.1|BASS5_ORYSJ RecName: Full=Probable sodium/metabolite cotransporter BASS5, chloroplastic; AltName: Full=Bile acid-sodium symporter family protein 5; Flags: Precursor gi|403399724|sp|B8BDK4.1|BASS5_ORYSI RecName: Full=Probable sodium/metabolite cotransporter BASS5, chloroplastic; AltName: Full=Bile acid-sodium symporter family protein 5; Flags: Precursor gi|52076164|dbj|BAD46677.1| unknown protein [Oryza sativa Japonica Group] gi|113631934|dbj|BAF25615.1| Os09g0520600 [Oryza sativa Japonica Group] gi|215678840|dbj|BAG95277.1| unnamed protein product [Oryza sativa Japonica Group] gi|218202470|gb|EEC84897.1| hypothetical protein OsI_32074 [Oryza sativa Indica Group] gi|222641934|gb|EEE70066.1| hypothetical protein OsJ_30046 [Oryza sativa Japonica Group]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/306 (68%), Positives = 255/306 (83%), Gaps = 2/306 (0%)

Query: 67  TNSVSENISGPFDQDP--DRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALV 124
           +  V  + SG F++D   D + +     V   +  L+ ILK +N+ +PHVVLGST+LALV
Sbjct: 49  SGRVWASASGSFEKDRIGDDDVLASPQIVEESKVDLLKILKSANTIIPHVVLGSTILALV 108

Query: 125 FPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 184
           +PPSFTWFT RYYAPALGFLMFAVGVNSS KDFIEA +RP AI AGYVGQF++KP LG++
Sbjct: 109 YPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKPFLGFL 168

Query: 185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 244
           FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTATAVFV
Sbjct: 169 FGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFV 228

Query: 245 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 304
           TP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPPLSV V
Sbjct: 229 TPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPPLSVFV 288

Query: 305 TACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 364
           TA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKALQRT+
Sbjct: 289 TALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKALQRTV 348

Query: 365 SYETGV 370
           S+ETG+
Sbjct: 349 SFETGM 354

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809511|ref|XP_002872639.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297318476|gb|EFH48898.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/370 (60%), Positives = 280/370 (75%), Gaps = 25/370 (6%)

Query: 8   LQAQRSRFNSKTFSLTISKHN---IPVLPRNRSLSFSTSW-CPVHFRSISHSNLKFGSSR 63
           L++Q      + +S  +  HN   +   P N S SFS+   C V F              
Sbjct: 12  LKSQHRLLQPRNYSYPLVFHNTRRVATFPCN-SFSFSSQGSCSVDFP------------- 57

Query: 64  NFVTNSVSENISGPFDQDPDRNYVTES--NQVLNQEFS-LVNILKQSNSFLPHVVLGSTM 120
              +N +S+N    +   P R YV+ES  N++ +++ S ++  LKQ+NSF+PH +L ST+
Sbjct: 58  -IQSNLISQNGKSSY---PWRRYVSESDSNEMYHKKVSSIMETLKQANSFIPHAILLSTI 113

Query: 121 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPI 180
           LAL++PPSFTWF  RY+ P LGF+MFAVG+NS+E+DF+EA KRP AIFAGY+GQ+++KP+
Sbjct: 114 LALLYPPSFTWFKPRYFVPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPL 173

Query: 181 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 240
           LGYIFG I+VS+F LPT IGAGIMLVSCVSGAQLSNY TFLTDP LAPLSIVMTS+STAT
Sbjct: 174 LGYIFGVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTTFLTDPSLAPLSIVMTSVSTAT 233

Query: 241 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 300
           AV VTP+LSLLLIGK+LPVDV GM+SSILQ+VV PIAAGLLLNR FPR+ NAI+PFLP L
Sbjct: 234 AVLVTPMLSLLLIGKKLPVDVIGMISSILQVVVTPIAAGLLLNRLFPRLSNAIKPFLPAL 293

Query: 301 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 360
           +V+   CC+GAPLA+NI+S++SPFG TIL ++ITFHL AFVAGY  TG  F++  DVKAL
Sbjct: 294 TVIDMGCCIGAPLALNIDSILSPFGATILFIVITFHLLAFVAGYFFTGFFFSKVPDVKAL 353

Query: 361 QRTLSYETGV 370
           QRT+SYETG+
Sbjct: 354 QRTISYETGM 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
TAIR|locus:2132664	409	AT4G22840 "AT4G22840" [Arabido	0.864	0.809	0.657	8.7e-111
TAIR|locus:2118021	407	BAT5 "AT4G12030" [Arabidopsis	0.908	0.855	0.608	3.5e-107
TAIR|locus:2094483	431	AT3G25410 "AT3G25410" [Arabido	0.877	0.779	0.356	1.6e-47
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.684	0.640	0.330	1e-36
TAIR|locus:2202935	401	AT1G78560 "AT1G78560" [Arabido	0.817	0.780	0.304	9.8e-32
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.624	0.742	0.32	5e-28
UNIPROTKB|Q8E8Y1	308	SO_4519 "Sodium-dependent tran	0.527	0.655	0.319	2.3e-23
TIGR_CMR|SO_4519	308	SO_4519 "sodium-dependent tran	0.527	0.655	0.319	2.3e-23
UNIPROTKB|I3LIG7	361	SLC10A6 "Uncharacterized prote	0.569	0.603	0.287	8.8e-10
UNIPROTKB|Q12908	348	SLC10A2 "Ileal sodium/bile aci	0.563	0.620	0.240	1.3e-09

TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 225/342 (65%), Positives = 265/342 (77%)

Query:    29 IPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVT 88
             I V P N   + S S  P+    IS    + G SRN      S+N S     DP      
Sbjct:    30 IQVFPPNIFSNTSLS-SPLRIDPIS----QVGGSRNLWRRYASDNFS-EMGLDPG----A 79

Query:    89 ESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAV 148
             +  +V+ +  S+V+ +K++NS LPHVVL ST+LAL++PPSFTWFT+RY+ PALGFLMFAV
Sbjct:    80 DPFKVIEKP-SIVDRMKKANSILPHVVLASTILALIYPPSFTWFTSRYFVPALGFLMFAV 138

Query:   149 GVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSC 208
             G+NS+EKDF+EAFKRP AI  GYVGQ++VKP+LG+IFG  +VS+F LPTPIGAGIMLVSC
Sbjct:   139 GINSNEKDFLEAFKRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQLPTPIGAGIMLVSC 198

Query:   209 VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSI 268
             VSGAQLSNYATFLTDP LAPLSIVMTSLSTATAV VTP+LSLLLIGK+LPVDVKGM+SSI
Sbjct:   199 VSGAQLSNYATFLTDPALAPLSIVMTSLSTATAVLVTPMLSLLLIGKKLPVDVKGMISSI 258

Query:   269 LQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXX 328
             LQ+V+ PIAAGLLLN+ FP++ NAIRPFLP LSVL TACCVGAPLA+NI SVMSPFG   
Sbjct:   259 LQVVIAPIAAGLLLNKLFPKVSNAIRPFLPILSVLDTACCVGAPLALNINSVMSPFGATI 318

Query:   329 XXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
                   FHLSAF+AGY +TG  F  A D KA+QRTLSYETG+
Sbjct:   319 LLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGM 360

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
 Identities = 221/363 (60%), Positives = 281/363 (77%)

Query:    17 SKTFSLTI-SKHNIPVLPRNRS--LSFSTSWCPVHFRSISHSNLKFGS-SRNFV--TNSV 70
             S T +L + S+H + + PRN S  L+F ++    +F   S S+L  GS S +F   +N +
Sbjct:     5 SPTETLFLKSQHRL-LQPRNYSYALAFHSTRRVANFPRNSFSSL--GSCSVDFPLRSNPI 61

Query:    71 SENISGPFDQDPDRNYVTES--NQVLNQEFS-LVNILKQSNSFLPHVVLGSTMLALVFPP 127
             S+N        P R YV+ES  N++ +++ S ++  LKQ+ SF+PH +L ST+LALV+PP
Sbjct:    62 SQNSKSIH---PWRRYVSESDSNELYHKKVSSIMETLKQAYSFIPHGILLSTILALVYPP 118

Query:   128 SFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187
             SFTWF  RY+ P LGF+MFAVG+NS+E+DF+EA KRP AIFAGY+GQ+++KP+LGYIFG 
Sbjct:   119 SFTWFKPRYFVPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGV 178

Query:   188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPL 247
             I+VS+F LPT IGAGIMLVSCVSGAQLSNY TFLTDP LA LSIVMTS+STATAV VTP+
Sbjct:   179 IAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPM 238

Query:   248 LSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 307
             LSLLLIGK+LPVDV GM+SSILQ+V+ PIAAGLLLNR FPR+ NAI+PFLP L+V+  +C
Sbjct:   239 LSLLLIGKKLPVDVFGMISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSC 298

Query:   308 CVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYE 367
             C+GAPLA+NI+S++SPFG         FHL AFVAGY  TG  F++A DVKALQRT+SYE
Sbjct:   299 CIGAPLALNIDSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYE 358

Query:   368 TGV 370
             TG+
Sbjct:   359 TGM 361

GO:0005215 "transporter activity" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 126/353 (35%), Positives = 194/353 (54%)

Query:    27 HNIPVLPRNRSLSFSTSWCPVH-FRSISHSN-LKFG-SSRNFVTNSVSENISGPFDQDPD 83
             HN+P   ++ +  F +S  P+    S S SN L F    RN     V    + PF     
Sbjct:    23 HNLPAKSQSFNCQFRSSSSPLSSLHSSSLSNFLDFRLRRRNSGLVPVVACSTTPFMGRVG 82

Query:    84 RNYVTESNQVLNQEFSLVNILKQSNS------FLPHVVLGSTMLALVFPPSFTWFTARYY 137
              ++  + N  L       ++ ++++S       LP VV  + + AL +PPSFTW +   Y
Sbjct:    83 LHW-RDGNMSLLSFCGGTDVTEKADSSQFWSALLPFVVALTAVAALSYPPSFTWVSKDLY 141

Query:   138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 197
             APALG +M ++G+  S  DF  AFKRP  +  G+V Q+V+KP+LG +      + FG+P 
Sbjct:   142 APALGGIMLSIGIQLSVDDFALAFKRPVPLSVGFVAQYVLKPLLGVLVA----NAFGMPR 197

Query:   198 PIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL 257
                AG +L  CV+GAQLS+YA+ L+   +A +SI++TS +T  +V  TPLLS LLIG  +
Sbjct:   198 TFYAGFILTCCVAGAQLSSYASSLSKADVA-MSILLTSSTTIASVIFTPLLSGLLIGSVV 256

Query:   258 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI 317
             PVD   M  SILQ+V+VPI  GL+LN +   +   ++P +P ++++ T+ C+G+PL+IN 
Sbjct:   257 PVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTLLQPVMPFVAMVCTSLCIGSPLSINR 316

Query:   318 ESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
               ++S  G         FH  AF  GY  + +      +   + RT+S  TG+
Sbjct:   317 SQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGLRQEE--EVSRTISLCTGM 367

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 92/278 (33%), Positives = 154/278 (55%)

Query:    94 LNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSF-TWFTARYYAPALGFLMFAVGVNS 152
             L+Q   ++ +L  +  F   V+LG+  L  +F PS  TW     +   LGFLM ++G+  
Sbjct:    91 LSQYEKIIELL--TTLFPLWVILGT--LVGIFKPSLVTWLETDLFTLGLGFLMLSMGLTL 146

Query:   153 SEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA 212
             + +DF    + P  +  G++ Q+++KPILG++   I++++  L  P+  G++LVSC  G 
Sbjct:   147 TFEDFRRCLRNPWTVGVGFLAQYMIKPILGFL---IAMTL-KLSAPLATGLILVSCCPGG 202

Query:   213 QLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIV 272
             Q SN AT+++   +A LS++MT+ ST  A+ +TPLL+ LL G+ +PVD  G+  S  Q+V
Sbjct:   203 QASNVATYISKGNVA-LSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVV 261

Query:   273 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXX 332
             +VP   G+L N FFP+  + I    P + V++T     +P+   +  V+   G       
Sbjct:   262 LVPTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIG-QVADVLKTQGAQLILPV 320

Query:   333 XXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
                H +AF  GY ++  +F E+       RT+S E G+
Sbjct:   321 ALLHAAAFAIGYWISKFSFGES-----TSRTISIECGM 353

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 102/335 (30%), Positives = 163/335 (48%)

Query:    46 PVHFRSISHSNLKFG-SSRNFVTNSVSE-NIS---GPFDQDP-----DRNYVTESNQVLN 95
             P+H R+IS S L +  SSR     + S   IS     FD  P       +  TE  +   
Sbjct:    28 PLHLRTISCSRLSYSPSSREISLKTQSTVPISCRRSRFDFVPRCGISSNDLPTEKKKSFG 87

Query:    96 QEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEK 155
             +    V     S +F   V LG  +L L+ P +F W T  +    L   M  +G+  +  
Sbjct:    88 EWVEFVGEAV-STAFPIWVSLGC-LLGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLD 145

Query:   156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS 215
             D   A   P  +FAG++ Q+ V P+  +    +S  +  LP    AG++LV C  G   S
Sbjct:   146 DLRGALSMPKELFAGFLLQYSVMPLSAFF---VS-KLLNLPPHYAAGLILVGCCPGGTAS 201

Query:   216 NYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVP 275
             N  T++    +A LS++MT+ ST +AV +TPLL+  L  + + VD  G++ S LQ+V++P
Sbjct:   202 NIVTYIARGNVA-LSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTLQVVLLP 260

Query:   276 IAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXF 335
             + AG  LN++F ++   + P +PP++V   A   G  +  N  +++   G          
Sbjct:   261 VLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNASAILMS-GKQVVLASCLL 319

Query:   336 HLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
             H+S F+ GY+ + +      DV A  RT+S E G+
Sbjct:   320 HISGFLFGYLFSRIL---GIDV-ASSRTISIEVGM 350

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 80/250 (32%), Positives = 123/250 (49%)

Query:   121 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPI 180
             +A   P  F    + Y    LG +MF +G+     DF     +P  +  G   QF++ P+
Sbjct:    25 IAYFIPAPFLGLNS-YITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFIIMPL 83

Query:   181 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 240
             + Y+       V  LP  + AG++L+  V G   SN   +L    LA LSI MTSLST  
Sbjct:    84 VAYVLAY----VMNLPAELAAGLVLLGSVPGGTASNVMVYLAKGNLA-LSIAMTSLSTLL 138

Query:   241 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 300
             A   TPL+ LLL G+ +PV+   M  SI+Q++++PI  GL++ +FFP+        +P +
Sbjct:   139 APIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLVVKKFFPKTVTKGMTVIPFI 198

Query:   301 SVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKAL 360
             SVL     V A ++ N+ S+ S  G          +   F+ GY+    AF    D +  
Sbjct:   199 SVLAIIIIVSAVVSANVSSITSS-GLLILIAVMLHNAFGFLLGYIT---AFILKLD-EGT 253

Query:   361 QRTLSYETGV 370
             +R +S E G+
Sbjct:   254 RRAISIEVGM 263

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 67/210 (31%), Positives = 112/210 (53%)

Query:   108 NSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI 167
             N   P   L   + A + P  F  F      P L  +M ++G+    +DF  AFK+  A+
Sbjct:     5 NRLFPLFALLGAVTAYLMPAWFVVFK-NSIVPLLVVIMLSMGLTLDLQDFANAFKQKRAV 63

Query:   168 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 227
               G + QF + P+       IS+ + GL   +  G++LV  V+G   SN   +L    +A
Sbjct:    64 ITGLILQFTLMPLSAL---AISL-LLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVA 119

Query:   228 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF- 286
              LSI MT+LST   V +TPL+  LLIG+ + + +  M+ S+++IV++P+  G++LN FF 
Sbjct:   120 -LSITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFK 178

Query:   287 PRICNAIRPFLPPLSVLVTACCVGAPLAIN 316
             P++   + P LP +S++     +   +A+N
Sbjct:   179 PQVAK-LSPALPLISIVAIVMAISIIVALN 207

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 67/210 (31%), Positives = 112/210 (53%)

Query:   108 NSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI 167
             N   P   L   + A + P  F  F      P L  +M ++G+    +DF  AFK+  A+
Sbjct:     5 NRLFPLFALLGAVTAYLMPAWFVVFK-NSIVPLLVVIMLSMGLTLDLQDFANAFKQKRAV 63

Query:   168 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 227
               G + QF + P+       IS+ + GL   +  G++LV  V+G   SN   +L    +A
Sbjct:    64 ITGLILQFTLMPLSAL---AISL-LLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVA 119

Query:   228 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF- 286
              LSI MT+LST   V +TPL+  LLIG+ + + +  M+ S+++IV++P+  G++LN FF 
Sbjct:   120 -LSITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFK 178

Query:   287 PRICNAIRPFLPPLSVLVTACCVGAPLAIN 316
             P++   + P LP +S++     +   +A+N
Sbjct:   179 PQVAK-LSPALPLISIVAIVMAISIIVALN 207

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

UNIPROTKB|I3LIG7 SLC10A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 8.8e-10, P = 8.8e-10
 Identities = 69/240 (28%), Positives = 108/240 (45%)

Query:   138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 197
             A  LG LMF++G +   +      +RP  I  G + QF + P+L Y+     V  F L  
Sbjct:    39 AVMLGLLMFSLGCSVEIRKLWLHIRRPWGIAVGLLCQFGLMPLLAYLL----VKSFSLKP 94

Query:   198 PIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL----- 252
                  ++++ C  G  +SN  TF  D  +  LSI MT+ ST  A+ + PL   L      
Sbjct:    95 VHAVALLIMGCCPGGTVSNIFTFWVDGDM-DLSISMTTCSTVAALGMMPLCLYLYTLSWN 153

Query:   253 IGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRP---FLPPLSVLVTACCV 309
             + +RL +  + M    L  + +P+A G+ +N  +P+    I      +  + +LV A   
Sbjct:   154 LEQRLTIPYQNM-GITLMCLAIPVAFGICVNYKWPKQSKIILKAGAIVGGVLLLVVAVA- 211

Query:   310 GAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETG 369
             GA LA   E   S  G         F L   V G+++  LA  ++   +   RT+S ETG
Sbjct:   212 GAVLA---EGSWSSDGVLLTISFI-FPLLGHVTGFLLALLAH-QSWQRRC--RTISLETG 264

GO:0016020 "membrane" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

UNIPROTKB|Q12908 SLC10A2 "Ileal sodium/bile acid cotransporter" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 57/237 (24%), Positives = 111/237 (46%)

Query:   141 LGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIG 200
             L  +MF++G N   K F+   KRP  I  G++ QF + P+ G+I  +++  +  L   + 
Sbjct:    42 LALVMFSMGCNVEIKKFLGHIKRPWGICVGFLCQFGIMPLTGFIL-SVAFDILPLQAVV- 99

Query:   201 AGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD 260
               ++++ C  G   SN   +  D  +  LS+ MT+ ST  A+ + PL   LLI  ++ VD
Sbjct:   100 --VLIIGCCPGGTASNILAYWVDGDM-DLSVSMTTCSTLLALGMMPLC--LLIYTKMWVD 154

Query:   261 VKGMV------SSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL-SVLVTACCVGAPL 313
                +V       + L  +VVP++ G+ +N  +P+    I        ++L+    V   +
Sbjct:   155 SGSIVIPYDNIGTSLVSLVVPVSIGMFVNHKWPQKAKIILKIGSIAGAILIVLIAVVGGI 214

Query:   314 AINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
                   +++P           F ++ +  G+++  +A    +      RT+++ETG+
Sbjct:   215 LYQSAWIIAP---KLWIIGTIFPVAGYSLGFLLARIAGLPWYRC----RTVAFETGM 264

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0008206 "bile acid metabolic process" evidence=TAS

GO:0015721 "bile acid and bile salt transport" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q650U0	BASS5_ORYSJ	No assigned EC number	0.6895	0.7937	0.7581	yes	no
Q8VYY4	BASS6_ARATH	No assigned EC number	0.7060	0.8015	0.7506	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.III.321.1 bile acid-Na+ symporter family protein (317 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	383
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	5e-41
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	1e-36
TIGR00841	286	TIGR00841, bass, bile acid transporter	6e-35
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	2e-05

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score =  142 bits (361), Expect = 5e-41
 Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 10/192 (5%)

Query: 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 197
              L  +MF++G+    +DF E F+RP A+  G + Q+V+ P+L +I       +  LP 
Sbjct: 1   PLGLFLMMFSMGLKVRYEDFKELFRRPKALLLGLLLQWVIMPLLMFILAWF---LLRLPP 57

Query: 198 PIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL 257
            +  G++LV C  G  +SN  T+L    +  LS+VM +LST TA  VTPLLS LL G  L
Sbjct: 58  ELAVGLILVGCAPGGAMSNVWTYLAKGDVE-LSVVMVALSTLTAPLVTPLLSFLLSGLLL 116

Query: 258 PVDVK----GMVSSILQIVVVPIAAGLLLNRFFPR--ICNAIRPFLPPLSVLVTACCVGA 311
            V        ++ S+L  V++P+ AG+L   F PR      I P LPP+S++     +  
Sbjct: 117 DVGTAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLLTIVV 176

Query: 312 PLAINIESVMSP 323
             ++  E + S 
Sbjct: 177 IFSLKGEVIASL 188

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score =  134 bits (340), Expect = 1e-36
 Identities = 89/261 (34%), Positives = 131/261 (50%), Gaps = 12/261 (4%)

Query: 109 SFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIF 168
            FL  VVL +  +A +FP +F W        AL  +MF +G+  S +DF+   K P  + 
Sbjct: 14  IFLLWVVLLAA-IAPIFPETFGWL-GSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVL 71

Query: 169 AGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAP 228
            G   QFV+ P+L  +       +F LP  +  G++L+ C  G   SN  T+L    +A 
Sbjct: 72  IGLAAQFVLMPLLALLLA----KLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVA- 126

Query: 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 288
           LS+  TS+ST    F+TPLL  LL G  +PVDV GM  SIL  V++P   G LL    P+
Sbjct: 127 LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPK 186

Query: 289 ICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTG 348
               ++  LPP+SVL     V A  +  +E+ +   GL I + +I  +L   + GY    
Sbjct: 187 WVERLKKALPPVSVLSILLIVYAAFSAAVENGIW-SGLLIFVAVILHNLLGLLLGYFGAR 245

Query: 349 LAFAEAHDVKALQRTLSYETG 369
           L   +    KA + T++ E G
Sbjct: 246 LLGFD----KADEITIAIEGG 262

Length = 319

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score =  129 bits (327), Expect = 6e-35
 Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 15/245 (6%)

Query: 129 FTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI 188
            T  +       L  +MF++G     +DF    ++P  +  G + Q+ + P+ G++    
Sbjct: 3   STNLST-ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA-- 59

Query: 189 SVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLL 248
              VF LP  +  G+++V C  G   SN  T+L    +A LSI MT+ ST  A+ + PLL
Sbjct: 60  --KVFKLPPELAVGVLIVGCCPGGTASNVFTYLLKGDMA-LSISMTTCSTLLALGMMPLL 116

Query: 249 SLLLIGKRLPVDVKGMVSSI---LQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT 305
             +     +   +      I   L IV++P++ G+L+    P+I   I   +  +SV + 
Sbjct: 117 LYIYAKMWVDGTLVVPYLGIGLSLVIVLIPVSIGMLVKHKLPQIAKIIL-KVGLISVFLL 175

Query: 306 ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS 365
           +  +     IN+E+ ++  G  +LL+ I   L+ F+ GY++  LA        A  RT+S
Sbjct: 176 SVIIAVVGGINVEN-LATIGPLLLLVGILLPLAGFLLGYLLAKLAGLP----WARCRTIS 230

Query: 366 YETGV 370
            E G+
Sbjct: 231 IEVGM 235

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 41/247 (16%)

Query: 114 VVLGSTMLALVFPPS---FTWFTARYYAPALGFLMFAV-GVNSSEKDFIEAFKRPAAIFA 169
            ++ + +LA +FP          A Y       L+F + G+  S ++ +   +       
Sbjct: 6   ALVLAILLASLFPVPGAAGGPIRAEYVTTYAVALIFFLSGLKLSTEELLAGLRNWRLHLF 65

Query: 170 GYVGQFVVKPILGYIFGTISVSVFG------------LPTPIGAGIMLVSCVSGAQLSNY 217
             +  FV+ P+LG     +  +               LPT + + + + S   G      
Sbjct: 66  VQLFTFVLFPLLGLGLSPLLPAALPPELLLGFLFLAALPTTVSSSVAMTSQAGG------ 119

Query: 218 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLL-SLLLIGKRLPVDVKGMVSSILQIVVVPI 276
                +   A   +   S+S    VF+TPLL  LLL G    VD+  ++  +L  +++P 
Sbjct: 120 -----NVAAA---VCSASISNLLGVFLTPLLVGLLLGGGGGGVDLGAVLKKLLLQLLLPF 171

Query: 277 AAGLLLNRFFPRICNAIRPFLPPLS----VLV--TACCV----GAPLAINIESVMSPFGL 326
             G LL   FP+     +  L  +     +L+  TA       G   +++   ++  F L
Sbjct: 172 VLGQLLRPLFPKWVARHKKLLKKVDRSSILLIVYTAFSTAFVEGIWHSVSHSILLVIFAL 231

Query: 327 TILLLII 333
            +LLL +
Sbjct: 232 GLLLLFV 238

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	100.0
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	100.0
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	100.0
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.97
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.95
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.01
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	98.98
PRK09903	314	putative transporter YfdV; Provisional	98.89
COG0679	311	Predicted permeases [General function prediction o	98.77
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	98.46
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	98.01
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.93
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	97.85
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.25
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.94
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	96.88
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	96.83
PRK05326	562	potassium/proton antiporter; Reviewed	96.39
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	96.2
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.16
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	96.12
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	95.96
PRK10669	558	putative cation:proton antiport protein; Provision	95.48
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	95.08
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	95.0
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	94.84
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	94.69
PLN03159	832	cation/H(+) antiporter 15; Provisional	94.6
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.43
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	94.24
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	94.03
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	92.14
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	91.72
PRK04288	232	antiholin-like protein LrgB; Provisional	91.55
PRK10711	231	hypothetical protein; Provisional	91.23
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	91.22
TIGR01109	354	Na_pump_decarbB sodium ion-translocating decarboxy	90.72
PRK15477	433	oxaloacetate decarboxylase subunit beta; Provision	90.27
PRK15476	433	oxaloacetate decarboxylase subunit beta; Provision	90.24
PRK15475	433	oxaloacetate decarboxylase subunit beta; Provision	90.05
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	90.04
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	88.58
COG2855	334	Predicted membrane protein [Function unknown]	87.31
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	87.01
PRK03562	621	glutathione-regulated potassium-efflux system prot	85.6
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	85.56
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	85.36
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	85.16
TIGR00698	335	conserved hypothetical integral membrane protein.	85.1
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	84.39
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	83.22
PRK03659	601	glutathione-regulated potassium-efflux system prot	82.73
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	81.45
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	80.05

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=4.7e-45  Score=355.28  Aligned_cols=273  Identities=32%  Similarity=0.521  Sum_probs=252.8

Q ss_pred             hHHHHHH-HhhhHHHHHHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHH
Q 016764           99 SLVNILK-QSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV  177 (383)
Q Consensus        99 ~~~~~l~-~l~~~l~~~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl  177 (383)
                      +..+.++ +..+.+++|++....++...|+.+.|++ .+++++++++||.+|++++.+|+++.++|||.+++++++||++
T Consensus         2 ~~~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvl   80 (319)
T COG0385           2 KLLRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLG-SAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVL   80 (319)
T ss_pred             cHHHHHhHhHHHHHHHHHHHHHHHHHhccccchhhh-HHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHH
Confidence            3445553 4445789999999999999999999997 6889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Q 016764          178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL  257 (383)
Q Consensus       178 ~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v  257 (383)
                      ||+++|++++    .++++|+++.|+++++|||||+.||+||+++|||+ +++++++.+||+++++++|+++.++.|+++
T Consensus        81 mPlla~~~~~----~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v  155 (319)
T COG0385          81 MPLLALLLAK----LFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGV  155 (319)
T ss_pred             HHHHHHHHHH----HcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999998    67899999999999999999999999999999999 899999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Q 016764          258 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL  337 (383)
Q Consensus       258 ~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~  337 (383)
                      ++|.++++.++++++++|..+|+++|++.|++.++.+|.+++++..++++++...++.+.+.+.+. +..+.+.+++++.
T Consensus       156 ~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~-~~~v~~~v~~~n~  234 (319)
T COG0385         156 PVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS-GLLIFVAVILHNL  234 (319)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998888877764 4467788899999


Q ss_pred             HHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764          338 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS  382 (383)
Q Consensus       338 ~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s  382 (383)
                      ++|.+||+.+|.+ +.+.   ++++|+++|.||||.++++++|..
T Consensus       235 lg~~~gy~~ar~~-g~~~---a~~iti~ie~g~qn~~lg~alA~~  275 (319)
T COG0385         235 LGLLLGYFGARLL-GFDK---ADEITIAIEGGMQNLGLGAALAAA  275 (319)
T ss_pred             HHHHHHHHHHHHh-CCCh---hheeeEEEeeccccHHHHHHHHHh
Confidence            9999999999875 5443   899999999999999999998863

>TIGR00832 acr3 arsenical-resistance protein

Probab=100.00  E-value=4.8e-42  Score=339.80  Aligned_cols=269  Identities=15%  Similarity=0.227  Sum_probs=231.9

Q ss_pred             HhhhHHHHHH----HHHHHHHhccCcchhhhhhh----h---HHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHH
Q 016764          106 QSNSFLPHVV----LGSTMLALVFPPSFTWFTAR----Y---YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQ  174 (383)
Q Consensus       106 ~l~~~l~~~v----l~~~~lGl~~P~~~~~~~~~----~---i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~  174 (383)
                      +++|+++.++    ++++++|+.+|..+.+....    .   ..+.+++|||++|++++++|+++.+||||.++.+++.|
T Consensus         3 ~~~~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~q   82 (328)
T TIGR00832         3 LLERYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFIN   82 (328)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHH
Confidence            4555555555    44669999999998887521    1   22356789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016764          175 FVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG  254 (383)
Q Consensus       175 fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g  254 (383)
                      |+++|+++|+++++   +++++|+++.|+++++|||||++|++||+++|||. ++++++|.++++++++++|++++++.|
T Consensus        83 fvi~Plla~~l~~l---~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnv-alsv~lt~~stLl~~~~~P~l~~ll~~  158 (328)
T TIGR00832        83 WIIGPFLMFLLAWL---FLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDP-EYTLVLVAVNSLFQVFLYAPLAWLLLG  158 (328)
T ss_pred             HHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999984   34889999999999999999999999999999999 899999999999999999999998876


Q ss_pred             --------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhh-hhhcccChHHHHHHHHHHHHHhhhhhhhh
Q 016764          255 --------KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR-----ICN-AIRPFLPPLSVLVTACCVGAPLAINIESV  320 (383)
Q Consensus       255 --------~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~-----~~~-~i~~~l~~ls~l~llliv~~v~a~~~~~i  320 (383)
                              +++++|+++++++++.++++|+++|+++|++.++     +.+ +.++..+.++.+++..++...++.|++.+
T Consensus       159 ~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i  238 (328)
T TIGR00832       159 VSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETI  238 (328)
T ss_pred             cCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence                    3568999999999999999999999999999985     333 67778888899888888888888888877


Q ss_pred             hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764          321 MSPFG--LTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS  382 (383)
Q Consensus       321 ~~~~~--~~i~l~~~ll~~~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s  382 (383)
                      .++..  ..+.++.++++..+|.+||+++|.+ +.++   +++||+++|+|+||.++|+++|.+
T Consensus       239 ~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~-~l~~---~~~~a~~~e~g~qN~~lai~lA~~  298 (328)
T TIGR00832       239 IELPLDIALIAIPLLIYFYIMFFLTFALAKKL-GLPY---SITAPAAFTGASNNFELAIAVAIS  298 (328)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcCh---hhhhhheehhhhhhHHHHHHHHHH
Confidence            76532  2344567899999999999999875 5553   899999999999999999999864

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00841 bass bile acid transporter

Probab=100.00  E-value=6.7e-37  Score=297.81  Aligned_cols=236  Identities=28%  Similarity=0.444  Sum_probs=215.1

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhH
Q 016764          135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL  214 (383)
Q Consensus       135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~  214 (383)
                      .++.+.++++||.+|++++++|+++.++||+.+..+++.|++++|+++|++++    .++++++++.|+++++++||+.+
T Consensus         8 ~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~----~~~l~~~~~~glvL~~~~P~~~~   83 (286)
T TIGR00841         8 TILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAK----VFKLPPELAVGVLIVGCCPGGTA   83 (286)
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHheeeCCCchH
Confidence            45666799999999999999999999999999999999999999999999998    67899999999999999999999


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCcc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016764          215 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL----PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRIC  290 (383)
Q Consensus       215 s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v----~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~  290 (383)
                      +++||+++|||. +++..++.++|+++++++|+++.++.+...    ++|+++++.+ +.++++|+++|+++|++.|++.
T Consensus        84 s~v~t~~~~gn~-~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~  161 (286)
T TIGR00841        84 SNVFTYLLKGDM-ALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIA  161 (286)
T ss_pred             HHHHHHHhCCCH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHH
Confidence            999999999999 899999999999999999999999876544    4999999999 9999999999999999999998


Q ss_pred             hhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccceeeEeeecc
Q 016764          291 NAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV  370 (383)
Q Consensus       291 ~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~  370 (383)
                      ++.++ .+.++.+.+.+++...++.+.+.+.+. .+.+++.++++++++|.+||+.+|.+ +.++   +++||+++|+|+
T Consensus       162 ~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~~~-~l~~---~~~~t~~~~~g~  235 (286)
T TIGR00841       162 KIILK-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAKLA-GLPW---ARCRTISIEVGM  235 (286)
T ss_pred             HHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCH---hhheeeeeeeec
Confidence            88888 899999988888877788888877664 45677889999999999999999875 5443   789999999999


Q ss_pred             CChHHhhhhhcc
Q 016764          371 MFLYNKILYSSS  382 (383)
Q Consensus       371 rN~~lAl~IA~s  382 (383)
                      ||.++|+++|.+
T Consensus       236 qN~~lal~la~~  247 (286)
T TIGR00841       236 QNSQLCSTIAQL  247 (286)
T ss_pred             ccHHHHHHHHHH
Confidence            999999999874

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=100.00  E-value=2.1e-33  Score=276.59  Aligned_cols=266  Identities=20%  Similarity=0.273  Sum_probs=231.7

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhh----hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 016764          109 SFLPHVVLGSTMLALVFPPSFTWFT----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI  184 (383)
Q Consensus       109 ~~l~~~vl~~~~lGl~~P~~~~~~~----~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~  184 (383)
                      +++++.++.++++|+.+|+.+....    +...++.+++++|.+|++++.+|+++.++|||.++.++..+|+++|+++++
T Consensus         1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999987432    245678999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhccCCChhHHHHHHHHhcCCchhHHH-HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-CCccccChH
Q 016764          185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI-GKRLPVDVK  262 (383)
Q Consensus       185 l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~-v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~-g~~v~id~~  262 (383)
                      +..++.  ..++++++.|+++++|+|++..|+ +||+.+|||. ++++.++.++|+++++++|+++.++. +++.++|+.
T Consensus        81 ~~~l~~--~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~  157 (313)
T PF13593_consen   81 LSRLFP--AFLPPELALGLLILACLPTTVSSSVVLTRLAGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYA  157 (313)
T ss_pred             HHHHhh--ccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHH
Confidence            998532  246899999999999999998886 5999999999 89999999999999999999999998 788899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhh--hhhhh---hhhhhHHHHHHHHHHH
Q 016764          263 GMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAIN--IESVM---SPFGLTILLLIITFHL  337 (383)
Q Consensus       263 ~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~--~~~i~---~~~~~~i~l~~~ll~~  337 (383)
                      +++.++...+++|+++|+++|++++++.+|.++.++.++...+++++...++..  .+...   ......+....+.++.
T Consensus       158 ~~~~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~  237 (313)
T PF13593_consen  158 SVLIKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL  237 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887776554  22221   1111234566788999


Q ss_pred             HHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhc
Q 016764          338 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSS  381 (383)
Q Consensus       338 ~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~  381 (383)
                      ..+.++|..+|.+ +.++   +|++++.|..++||..+++.+++
T Consensus       238 ~~l~~~~~~~r~~-~~~~---~d~iA~~F~gs~Ksl~~gvpl~~  277 (313)
T PF13593_consen  238 VVLVLGWLAARLL-GFSR---PDRIAVLFCGSQKSLALGVPLAS  277 (313)
T ss_pred             HHHHHHHHHHhhc-CCCh---hhEEEEEEEcCcCcchhHHHHHH
Confidence            9999999999875 5554   79999999999999999998875

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-31  Score=257.88  Aligned_cols=277  Identities=14%  Similarity=0.200  Sum_probs=241.8

Q ss_pred             chHHHHHHHhhhHHHHHHHHH----HHHHhccCcchhhhh-------hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhH
Q 016764           98 FSLVNILKQSNSFLPHVVLGS----TMLALVFPPSFTWFT-------ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAA  166 (383)
Q Consensus        98 ~~~~~~l~~l~~~l~~~vl~~----~~lGl~~P~~~~~~~-------~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~  166 (383)
                      ++..+.++++||+++.|+..+    +.+|..+|+..+...       +.-+.+.+.+||+.+.+++|+++++++.+++|.
T Consensus         3 ~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~   82 (342)
T COG0798           3 MKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKP   82 (342)
T ss_pred             hhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchH
Confidence            344567889999888887554    467788898655444       234567899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Q 016764          167 IFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTP  246 (383)
Q Consensus       167 ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~P  246 (383)
                      +...+..|+++.|+++|++++++   ++..|++.+|+++++.+||..++.+|+++++||. +++++.+.++.++++++.|
T Consensus        83 L~lsL~~Nwii~P~lm~~la~~f---l~~~pey~~GlILlglApC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~  158 (342)
T COG0798          83 LILSLFVNWIIGPLLMFALAWFF---LPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYA  158 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999964   4778899999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHHhhCCc-cccChHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhcccChHHHHHHHHHHHHHhhhhhhh
Q 016764          247 LLSLLLIGKR-LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR------ICNAIRPFLPPLSVLVTACCVGAPLAINIES  319 (383)
Q Consensus       247 l~l~ll~g~~-v~id~~~i~~~Lll~VllPl~lG~llr~~~p~------~~~~i~~~l~~ls~l~llliv~~v~a~~~~~  319 (383)
                      .+.+++.|.. ++++++++++++++.+.+|+++|++.|++..+      +.+|+.|..++++..+++..+..+++.+.+.
T Consensus       159 ~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~  238 (342)
T COG0798         159 PLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQ  238 (342)
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHH
Confidence            9999988754 78999999999999999999999999987533      2467888899999999999999999999999


Q ss_pred             hhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764          320 VMSPFG--LTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS  382 (383)
Q Consensus       320 i~~~~~--~~i~l~~~ll~~~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s  382 (383)
                      +.+.+.  ..++++..+.....+.++|+++|.+ +.+.   +++.+++|.++.+|.++|+++|.+
T Consensus       239 Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k~l-gl~y---~~~~~~~ft~aSNnfeLAiAvAi~  299 (342)
T COG0798         239 IVEQPLDILLIAIPLLIYFLLMFFISYFIAKAL-GLPY---EDAAALVFTGASNNFELAIAVAIA  299 (342)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCh---hhhhceeeeeccccHHHHHHHHHH
Confidence            887643  2466788888899999999999875 5554   799999999999999999999865

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.97  E-value=6e-30  Score=234.22  Aligned_cols=181  Identities=30%  Similarity=0.560  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHH
Q 016764          138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY  217 (383)
Q Consensus       138 ~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v  217 (383)
                      +..++++||.+|++++++|+++.+||||.++.+++.||+++|+++|++++.   .++++++++.|+++++|+||+..+++
T Consensus         1 ~i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~---~~~~~~~~~~Gl~l~~~~P~~~~s~~   77 (187)
T PF01758_consen    1 PILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWL---LLPLSPALALGLLLVAACPGGPASNV   77 (187)
T ss_dssp             --HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-H---HTT--HHHHHHHHHHHHS-B-THHHH
T ss_pred             ChhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHhcCCcHHHHHH
Confidence            357899999999999999999999999999999999999999999999942   67899999999999999999999999


Q ss_pred             HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC---hHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhh
Q 016764          218 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD---VKGMVSSILQIVVVPIAAGLLLNRFFP--RICNA  292 (383)
Q Consensus       218 ~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id---~~~i~~~Lll~VllPl~lG~llr~~~p--~~~~~  292 (383)
                      ||+++|||. ++++.++.++++++++++|+++.++.+...+.|   .++++.+++..+++|+++|+++|++.|  +..++
T Consensus        78 ~t~l~~Gd~-~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~  156 (187)
T PF01758_consen   78 FTYLAGGDV-ALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARR  156 (187)
T ss_dssp             HHHHTT--H-HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HH
T ss_pred             HHHHhCCCc-ccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHH
Confidence            999999999 899999999999999999999999988877766   999999999999999999999999999  88889


Q ss_pred             hhcccChHHHHHHHHHHHHHhhhhhhhhhh
Q 016764          293 IRPFLPPLSVLVTACCVGAPLAINIESVMS  322 (383)
Q Consensus       293 i~~~l~~ls~l~llliv~~v~a~~~~~i~~  322 (383)
                      +++..+.++.+++++++...++.|.+.+.+
T Consensus       157 ~~~~~~~~s~~~l~~~i~~~~~~~~~~i~~  186 (187)
T PF01758_consen  157 LKPFLKPLSFILLLLIIVLIFASNASVIAS  186 (187)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHTH-----
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcccccC
Confidence            999999999999999988888888876644

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.1e-27  Score=238.13  Aligned_cols=263  Identities=38%  Similarity=0.612  Sum_probs=232.0

Q ss_pred             HHHHHHHHHHHHHhccC-cchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          110 FLPHVVLGSTMLALVFP-PSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI  188 (383)
Q Consensus       110 ~l~~~vl~~~~lGl~~P-~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l  188 (383)
                      .+++......++....| ..+.|+.+...++.+.+.|+++|++.|.+++++.++||+.+.+|++.||++||+.+|.++. 
T Consensus        87 ~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~-  165 (371)
T KOG2718|consen   87 ILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSK-  165 (371)
T ss_pred             chhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhh-
Confidence            67777777778888888 8888888778889999999999999999999999999999999999999999999999987 


Q ss_pred             hhhccCCChhHHHHHHHHhcCCchhHHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHH
Q 016764          189 SVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSS  267 (383)
Q Consensus       189 ~~~~~~l~~~~a~GlvL~a~~P~~~~s~v-~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~  267 (383)
                         .+.+|..+++|++++.|++++..++. ++...+||. .+++.+|.++|+.+++++|++...+.++.++.|...+..+
T Consensus       166 ---~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v-~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s  241 (371)
T KOG2718|consen  166 ---VLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDV-TLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIAS  241 (371)
T ss_pred             ---HhhCCccccceeEEEEeccCCcchhhheeecCCcch-hhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhh
Confidence               56778888788888888776666655 555559999 8999999999999999999999999888888898888889


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016764          268 ILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT  347 (383)
Q Consensus       268 Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~lla  347 (383)
                      ++..+.+|+++|.++|+++|+..+.+.+.++++++....++++.....|...+.. .++.+...+..+++.||..||+.+
T Consensus       242 ~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~  320 (371)
T KOG2718|consen  242 ILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLS  320 (371)
T ss_pred             hhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999988877778777777 688899999999999999999997


Q ss_pred             HHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764          348 GLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS  382 (383)
Q Consensus       348 r~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s  382 (383)
                      +....+    ++++||++.|+||||..+|++.++.
T Consensus       321 ~~~~~~----~a~~~tisie~g~q~s~~a~~l~t~  351 (371)
T KOG2718|consen  321 FSPLDD----VATARTISIETGMQNSLLALALATK  351 (371)
T ss_pred             ccccch----hhhhcchHHHhccchhHHHHHHhhc
Confidence            432121    3689999999999999999988764

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.01  E-value=6.7e-09  Score=102.56  Aligned_cols=125  Identities=15%  Similarity=0.206  Sum_probs=108.2

Q ss_pred             HHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhH
Q 016764          120 MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPI  199 (383)
Q Consensus       120 ~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~  199 (383)
                      ..|+..|+......+........+.|+..|+.++.++.+   ++++........++++.|++++++..    .++++++.
T Consensus       196 ~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~P~i~~~~~~----~~~l~~~~  268 (321)
T TIGR00946       196 LVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQPAVMAGISK----LIGLRGLE  268 (321)
T ss_pred             HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHHHHHHHHHHH----HhCCChHH
Confidence            456667877665555566778999999999999887664   35567788888999999999999987    67889999


Q ss_pred             HHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          200 GAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       200 a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll  252 (383)
                      ....++++++|++..+.+++...|+|. +.+...+.++|+++.+++|+|++++
T Consensus       269 ~~~~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sT~ls~~tlp~~~~l~  320 (321)
T TIGR00946       269 LSVAILQAALPGGAVAAVLATEYEVDV-ELASTAVTLSTVLSLISLPLFIILL  320 (321)
T ss_pred             HHHHHHHHcCChhhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999 8999999999999999999999875

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=98.98  E-value=9.6e-10  Score=101.69  Aligned_cols=188  Identities=14%  Similarity=0.188  Sum_probs=142.6

Q ss_pred             HHHhh-hHHHHHHHHHHHHHhccCcchhhhh---hhh-H-HHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHH
Q 016764          104 LKQSN-SFLPHVVLGSTMLALVFPPSFTWFT---ARY-Y-APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV  177 (383)
Q Consensus       104 l~~l~-~~l~~~vl~~~~lGl~~P~~~~~~~---~~~-i-~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl  177 (383)
                      ..+.+ +|+...+.++...+-+-|+.+....   +.+ + ....+-+++..|++++.|++..+.++|+.++++++..+.+
T Consensus        17 ~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~   96 (287)
T KOG4821|consen   17 TEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSLLI   96 (287)
T ss_pred             HHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHHHHHHH
Confidence            33443 4777778888888888888764332   222 1 2366778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCC-
Q 016764          178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK-  255 (383)
Q Consensus       178 ~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v-~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~-  255 (383)
                      .|-..|++..+. ..-+.+.++..|+.+.+|+|++.+|++ .|..+|||..++.+.....+.+.++...|-....+... 
T Consensus        97 tPs~~~Lf~~~~-~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~LL~~~  175 (287)
T KOG4821|consen   97 TPSIVYLFCCAV-KAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQMLLNRA  175 (287)
T ss_pred             hHHHHHHHHHHH-hCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHccC
Confidence            999999887632 123466789999999999999999986 89999999744444455567777777777776665421 


Q ss_pred             -----------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016764          256 -----------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNA  292 (383)
Q Consensus       256 -----------~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~  292 (383)
                                 .+...+..++.+....+++|...|+..+...|+-+..
T Consensus       176 ~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  223 (287)
T KOG4821|consen  176 PFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTAY  223 (287)
T ss_pred             CccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCceeE
Confidence                       1223456677788889999999999999988875433

>PRK09903 putative transporter YfdV; Provisional

Probab=98.89  E-value=2.5e-08  Score=98.37  Aligned_cols=124  Identities=14%  Similarity=0.102  Sum_probs=103.8

Q ss_pred             HHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhH
Q 016764          120 MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPI  199 (383)
Q Consensus       120 ~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~  199 (383)
                      ..|+..|+..+...+........+.|+..|+.+...+++.   + +......+.++++.|++++++..    .+++++..
T Consensus       187 l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~---~-~~~~~~~~~Kli~~P~i~~~~~~----~~~l~~~~  258 (314)
T PRK09903        187 LVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEF---S-AEIAYNTFLKLILMPLALLLVGM----ACHLNSEH  258 (314)
T ss_pred             HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---c-HHHHHHHHHHHHHHHHHHHHHHH----HcCCCcHH
Confidence            4566678777665545567788999999999987765532   2 33456677899999999988776    56889999


Q ss_pred             HHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          200 GAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       200 a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll  252 (383)
                      ....++++++|++..+.+++...|+|. +++.....+||+++.+++|+|++++
T Consensus       259 ~~v~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        259 LQMMVLAGALPPAFSGIIIASRFNVYT-RTGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 8999999999999999999999875

>COG0679 Predicted permeases [General function prediction only]

Probab=98.77  E-value=1.8e-07  Score=92.39  Aligned_cols=127  Identities=18%  Similarity=0.247  Sum_probs=108.2

Q ss_pred             HHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhH
Q 016764          120 MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPI  199 (383)
Q Consensus       120 ~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~  199 (383)
                      ..|+..|+..+...+........+.|+..|++++.++.++  .+++........+++++|+.+++.++    .++++++.
T Consensus       182 ~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~~kll~~Pl~~~~~~~----~~~l~~~~  255 (311)
T COG0679         182 LLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALSLKLLLAPLVALLVAK----LLGLSGLA  255 (311)
T ss_pred             HcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHHHHHHHHHHHHHHHHH----HcCCChHH
Confidence            4567888876655556677899999999999999944433  24556666677799999999999988    67999999


Q ss_pred             HHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016764          200 GAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI  253 (383)
Q Consensus       200 a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~  253 (383)
                      ...+++++++|++..+.+++...++|. +++...+.++|+++.+++|.+...+.
T Consensus       256 ~~v~vl~~a~P~A~~~~v~a~~~~~~~-~laa~~i~ist~ls~~t~p~~~~~l~  308 (311)
T COG0679         256 LQVLVLLSAMPTAVNAYVLARQYGGDP-RLAASTILLSTLLSLLTLPLLILLLL  308 (311)
T ss_pred             HHHHHHHhhCcHHhHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999 89999999999999999999988774

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=98.46  E-value=3.4e-06  Score=84.79  Aligned_cols=137  Identities=15%  Similarity=0.094  Sum_probs=101.8

Q ss_pred             hhhHHHHHHHHHHHHHhcc---C----cchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHH
Q 016764          107 SNSFLPHVVLGSTMLALVF---P----PSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP  179 (383)
Q Consensus       107 l~~~l~~~vl~~~~lGl~~---P----~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~P  179 (383)
                      +.+-..+..+++.++++.-   |    +......+......+.+.||.+|..+.....+... +.+......+..++++|
T Consensus       242 ~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~rlii~P  320 (385)
T PF03547_consen  242 FKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVRLIILP  320 (385)
T ss_pred             HhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHH
Confidence            3333333445555555543   3    22222222344567888899999888765544322 33444556888999999


Q ss_pred             HHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 016764          180 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLS  249 (383)
Q Consensus       180 lla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l  249 (383)
                      ++++++..    .++++++....+++.+++|++..+.+++..++.|. ..+.....++++++++++|+|+
T Consensus       321 ~i~~~~~~----~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  321 LIGIGIVF----LLGLDGDMARVLILQAAMPTAINSFVIASLYGLDE-EEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHH----HHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHC
Confidence            99999987    56789999999999999999999999999999998 7888889999999999999984

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=98.01  E-value=0.00021  Score=70.54  Aligned_cols=228  Identities=18%  Similarity=0.230  Sum_probs=131.4

Q ss_pred             hHHHHHHHhhh-HHHHHHHHHHHHHhccCcchhhhh--h----hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHH
Q 016764           99 SLVNILKQSNS-FLPHVVLGSTMLALVFPPSFTWFT--A----RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY  171 (383)
Q Consensus        99 ~~~~~l~~l~~-~l~~~vl~~~~lGl~~P~~~~~~~--~----~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l  171 (383)
                      ++++.++++-. .+.+=++.+.++.-++|+..+.-.  +    .-..+.+++.+|.+|.+++.++..+.++|...+   +
T Consensus         2 ~i~~~~~kiPgg~m~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l---~   78 (312)
T PRK12460          2 HIKKAIKKIPGGMMVVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVL---T   78 (312)
T ss_pred             chhhhhccCCCceeHHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhh---h
Confidence            44455445543 333336788889999999854211  1    123568899999999999999999988775532   3


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHH-----HHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Q 016764          172 VGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-----YATFLTDPPLAPLSIVMTSLSTATAVFVTP  246 (383)
Q Consensus       172 ~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~-----v~T~lagGd~~~Lal~lt~istlla~~~~P  246 (383)
                      +.++++-=++++++++    +++.+.  ..|+-.++..-+...+|     ..+..+|-+.|.-+...  .+.--+|+++ 
T Consensus        79 ~~K~~~~~~~g~~~~~----~~g~~g--~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~gA~~~--~sl~~GPf~t-  149 (312)
T PRK12460         79 ITKLGVAIVIGLLVGK----FFGAEG--IFGLSGLAIVAAMSNSNGGLYAALMGEFGDERDVGAISI--LSLNDGPFFT-  149 (312)
T ss_pred             hHHHHHHHHHHHHHHH----HcCccc--ccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhhHHhh--hhhccCcHHH-
Confidence            4577776677888887    445433  22333333322222221     24555655443223322  2223344433 


Q ss_pred             HHHHHhhCCc--cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 016764          247 LLSLLLIGKR--LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPF  324 (383)
Q Consensus       247 l~l~ll~g~~--v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~  324 (383)
                         .+-.+..  .++|+.    .+ .-.++|+++|++++...+++.+.+++-.+. ..  .+..+......+-+++.+ .
T Consensus       150 ---m~aLga~gLA~ip~~----~l-v~lilpILiGmilGNld~~~~~~l~~Gi~f-~I--~f~~f~LG~~lnl~~I~~-~  217 (312)
T PRK12460        150 ---MLALGAAGLANIPIM----AL-VAALLPLVLGMILGNLDPDMRKFLTKGGPL-LI--PFFAFALGAGINLSMLLQ-A  217 (312)
T ss_pred             ---HHHHHHHHHhcCChH----HH-HHHHHHHHHHHHHhccchhhHHHHhccceE-eH--HHHHHHhcCCeeHHHHHH-h
Confidence               3322221  235543    22 348899999999999887777777765544 11  111111222334445544 3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          325 GLTILLLIITFHLSAFVAGYVVTGLA  350 (383)
Q Consensus       325 ~~~i~l~~~ll~~~gf~lG~llar~l  350 (383)
                      ++..++..++...+.+..+|+++|++
T Consensus       218 G~~GIlL~v~vv~~t~~~~~~i~rll  243 (312)
T PRK12460        218 GLAGILLGVLVTIVTGFFNIFADRLV  243 (312)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555666677778889999999765

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.93  E-value=0.00082  Score=66.23  Aligned_cols=181  Identities=14%  Similarity=0.279  Sum_probs=113.0

Q ss_pred             chHHHHHHHhhh-HHHHHHHHHHHHHhccCcchhhhh---hh---hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHH
Q 016764           98 FSLVNILKQSNS-FLPHVVLGSTMLALVFPPSFTWFT---AR---YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAG  170 (383)
Q Consensus        98 ~~~~~~l~~l~~-~l~~~vl~~~~lGl~~P~~~~~~~---~~---~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~  170 (383)
                      |++++.++++-. .+.+=++.+.++--++|+..+...   +.   -..+.+++.+|.+|.++++|+..+.+||--.+   
T Consensus         1 MkI~~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~l---   77 (314)
T PF03812_consen    1 MKIKKTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVL---   77 (314)
T ss_pred             CChhHhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHH---
Confidence            567777777654 444446888999999999876322   11   13568899999999999999999999875433   


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCCCh---hHHHHHH---HHhcCCchhHH--HHHHHhcCCCCchhHHHHHHHHHHHHH
Q 016764          171 YVGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIM---LVSCVSGAQLS--NYATFLTDPPLAPLSIVMTSLSTATAV  242 (383)
Q Consensus       171 l~~~fvl~Plla~~l~~l~~~~~~l~~---~~a~Glv---L~a~~P~~~~s--~v~T~lagGd~~~Lal~lt~istlla~  242 (383)
                      ++.++++-=++++++.+    +++.+.   ....|+-   +++++.....+  ...+..+|-+.| . -...    +++.
T Consensus        78 l~~K~~~~~~lgl~~~~----~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D-~-gA~~----i~sl  147 (314)
T PF03812_consen   78 LLVKFIIGALLGLLVGK----FFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED-V-GAFS----ILSL  147 (314)
T ss_pred             HHHHHHHHHHHHHHHHH----HcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH-h-HHHH----HHHh
Confidence            35678777777888887    444332   1223322   22222222111  124455554442 2 2222    3344


Q ss_pred             HHHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 016764          243 FVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPF  296 (383)
Q Consensus       243 ~~~Pl~l~ll~g~--~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~  296 (383)
                      ..-|+...+..|.  ..++|+..+     +-.++|+++|+++-..-|++.+-++|-
T Consensus       148 ~~GPf~tMl~LG~sG~a~ip~~~l-----v~~llP~iiG~iLGNLD~~~r~fl~~~  198 (314)
T PF03812_consen  148 NDGPFFTMLALGASGLANIPWMSL-----VAALLPIIIGMILGNLDPDFRKFLAPG  198 (314)
T ss_pred             hhhHHHHHHHHhhccccCCCHHHH-----HHHHHHHHHHHHHhcCCHHHHHHHhcC
Confidence            4556555555553  346887654     467789999999998888876666654

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=97.85  E-value=3.8e-06  Score=84.63  Aligned_cols=222  Identities=17%  Similarity=0.180  Sum_probs=149.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHH
Q 016764          142 GFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFV-VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATF  220 (383)
Q Consensus       142 ~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fv-l~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~  220 (383)
                      ...|+..|++++.++++++.++++.+...+..++. ++|...+....    .+..++......+...|+|++..++.++.
T Consensus        51 ~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v----~~~~~~~~~~t~l~~~~~~~gl~~~~ls~  126 (371)
T KOG2718|consen   51 NFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKV----LFLLDPLLAFTWLVTGCFPPGLLSNMLSF  126 (371)
T ss_pred             hHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHH----HhhcCCcccceEEEeCccccHHHHHHHHH
Confidence            37889999999999999999999888888888998 99999999987    45667767888899999999999999999


Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHH-HHHHHh----hCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016764          221 LTDPPLAPLSIVMTSLSTATAVFVTP-LLSLLL----IGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRP  295 (383)
Q Consensus       221 lagGd~~~Lal~lt~istlla~~~~P-l~l~ll----~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~  295 (383)
                      -.++|+ +....++.-.+.+.+..+| ++++=+    .+....+|...-..-++...+.|.-+|..++...++-...+..
T Consensus       127 g~~~~~-~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsi  205 (371)
T KOG2718|consen  127 GIKLDM-DLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSI  205 (371)
T ss_pred             hcCccH-HHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHH
Confidence            999999 7888888877777777666 322212    1222233332212223456677888888888776554444444


Q ss_pred             ccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHhhhccccccccceeeEeeeccCCh
Q 016764          296 FLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA--FVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFL  373 (383)
Q Consensus       296 ~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~g--f~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~  373 (383)
                      ....++.++.+++.-..-....+.+......  .+....+..++  +.+|+++.+.         -.+++..+++++||+
T Consensus       206 lmT~~stv~avi~~pl~s~~l~~~l~~~d~~--~v~~s~~~vv~~pl~lG~lL~~~---------~~k~t~~i~~~~~~v  274 (371)
T KOG2718|consen  206 LMTTISTVLAVILTPLLSILLGRALIPVDAL--GVIASILQVVGLPLALGLLLNKW---------FPKRTVAIEPGLPPV  274 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhhcccch--hhhhhhhHHhHHHHHHHHHhccc---------CccceeeeecCCCch
Confidence            4444444444333211111222222221111  12224455555  7888777632         258999999999999


Q ss_pred             HHhhhh
Q 016764          374 YNKILY  379 (383)
Q Consensus       374 ~lAl~I  379 (383)
                      ++..++
T Consensus       275 sv~~t~  280 (371)
T KOG2718|consen  275 SVCLTI  280 (371)
T ss_pred             HHHhhh
Confidence            987654

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.25  E-value=0.14  Score=51.08  Aligned_cols=160  Identities=14%  Similarity=0.144  Sum_probs=105.2

Q ss_pred             HHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 016764          116 LGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL  195 (383)
Q Consensus       116 l~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l  195 (383)
                      +.+.+.+...+....+-. ..-.....++=..+|..++.+.+.+....+...+...+...+..-+.+|.+.+    ..+.
T Consensus         7 ia~~~~~~~~~~~~~~p~-~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r----~~~~   81 (318)
T PF05145_consen    7 IAVIIAALFGPLPLRVPR-RLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRR----ISGL   81 (318)
T ss_pred             HHHHHHHHhCCCccCCCH-HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCC
Confidence            344444444433332221 23345555666679999999999988888877777777777777777888877    4455


Q ss_pred             ChhHHHHHHHHhcCCchhHHH-HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCC----ccccChH---HHHHH
Q 016764          196 PTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK----RLPVDVK---GMVSS  267 (383)
Q Consensus       196 ~~~~a~GlvL~a~~P~~~~s~-v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~----~v~id~~---~i~~~  267 (383)
                      +.  ..++  .++.|||.+.. +++.-.|+|. ........+=-++-++++|+...++.+.    ..+.+..   .-...
T Consensus        82 d~--~TA~--~~~~PGg~s~m~~la~~~gad~-~~Va~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (318)
T PF05145_consen   82 DR--ATAF--FASMPGGLSEMVALAEEYGADT-RRVALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMSWLW  156 (318)
T ss_pred             Ch--hHHH--HHcCCccHHHHHHHHHHcCCCh-hhhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCCHHH
Confidence            43  4444  49999998775 4888999998 7888888888888888999999887653    1111110   01223


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 016764          268 ILQIVVVPIAAGLLLNRF  285 (383)
Q Consensus       268 Lll~VllPl~lG~llr~~  285 (383)
                      +...+.+=.+.|.+.|+.
T Consensus       157 l~~l~~~~~~g~~l~~~l  174 (318)
T PF05145_consen  157 LALLALAALAGGLLARRL  174 (318)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            444555555666666665

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=96.94  E-value=0.014  Score=57.52  Aligned_cols=230  Identities=13%  Similarity=0.191  Sum_probs=126.3

Q ss_pred             hHHHHHHHhhh-HHHHHHHHHHHHHhccCcchhhhh---hh---hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHH
Q 016764           99 SLVNILKQSNS-FLPHVVLGSTMLALVFPPSFTWFT---AR---YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY  171 (383)
Q Consensus        99 ~~~~~l~~l~~-~l~~~vl~~~~lGl~~P~~~~~~~---~~---~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l  171 (383)
                      ++++.++++-. .+.+=++.+.++.-++|+.+....   +.   -..+.+++.+|++|.+++.|+-.+.++|...+   +
T Consensus         2 ~i~~~i~kIPGG~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~   78 (314)
T TIGR00793         2 KIKRSIEKIPGGMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---V   78 (314)
T ss_pred             chhhhhccCCCceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---e
Confidence            44444445543 233336788889999999865422   11   23568999999999999999999988775432   3


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCCh---hHHHHHHHHhcCCchhHHH-----HHHHhcCCCCchhHHHHHHHHHHHHHH
Q 016764          172 VGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIMLVSCVSGAQLSN-----YATFLTDPPLAPLSIVMTSLSTATAVF  243 (383)
Q Consensus       172 ~~~fvl~Plla~~l~~l~~~~~~l~~---~~a~GlvL~a~~P~~~~s~-----v~T~lagGd~~~Lal~lt~istlla~~  243 (383)
                      +.++++-=++++++++    +++.+.   .+..|+-.++..-+...+|     ..+..+|-+.|.-+..      +++.-
T Consensus        79 ~~K~~i~~~~g~~~~~----~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~~------i~sl~  148 (314)
T TIGR00793        79 VTKIAVAWVVAAIASR----IIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFV------LMSLE  148 (314)
T ss_pred             eHHHHHHHHHHHHHHH----HcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhhh------hhhhc
Confidence            4577776677888887    444332   2233333333332222221     2455565544222222      22333


Q ss_pred             HHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhh
Q 016764          244 VTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVM  321 (383)
Q Consensus       244 ~~Pl~l~ll~g~--~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~  321 (383)
                      --|+...+..|.  -.++|+..+     +-.++|+++|+++-..-|++.+-+.+-.+.+ ...+.+..+.  ..|-+++.
T Consensus       149 ~GPf~TMi~LG~sGlA~ip~~~l-----v~~ilPlliG~ilGNLD~~~r~fl~~~~~~l-IpFf~FaLGa--ginl~~i~  220 (314)
T TIGR00793       149 SGPLMTMVILGTAGIASFEPHVF-----VGAVLPFLVGFALGNLDPELRDFFSKAVQTL-IPFFAFALGN--TIDLGVII  220 (314)
T ss_pred             cCcHHHHHHHhhccCCCCCHHHH-----HHHHHHHHHHHHHhcCCHHHHHHhccCCCee-eehhhhhhcC--CCCHHHHH
Confidence            345555555553  245776644     5678899999999988877766655543321 1112222221  12333443


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          322 SPFGLTILLLIITFHLSAFVAGYVVTGLA  350 (383)
Q Consensus       322 ~~~~~~i~l~~~ll~~~gf~lG~llar~l  350 (383)
                      +. +..-++..++...+.....|+.-|.+
T Consensus       221 ~a-Gl~GIlLGl~v~~vtG~~~~~~dr~~  248 (314)
T TIGR00793       221 QT-GLLGILLGVSVIILTGIPLILADKFI  248 (314)
T ss_pred             Hh-CcchHHHHHHHHHHHhHHHHHHHHHh
Confidence            32 22222333334445555666766654

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=96.88  E-value=0.45  Score=45.69  Aligned_cols=147  Identities=17%  Similarity=0.227  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHH--HHHHHHhhhhccCC--ChhHHHHHHHHhcCC
Q 016764          135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTISVSVFGL--PTPIGAGIMLVSCVS  210 (383)
Q Consensus       135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Pll--a~~l~~l~~~~~~l--~~~~a~GlvL~a~~P  210 (383)
                      ......+.+++|..|+++|.+++++..|+...+   -...+ +.|..  ++..+.    .++.  ......|..+....|
T Consensus        45 ~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~lg~~ls~Ts~  116 (273)
T TIGR00932        45 HLAEFGVILLMFLIGLELDLERLWKLRKAAFGV---GVLQV-LVPGVLLGLLLGH----LLGLALGAAVVIGIILALSST  116 (273)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhHH
Confidence            345568889999999999999998865443222   22222 23522  232333    2333  333444444443332


Q ss_pred             chhHHHHHHH--hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016764          211 GAQLSNYATF--LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR  288 (383)
Q Consensus       211 ~~~~s~v~T~--lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~  288 (383)
                      +... .++..  +.+.+.-.+.+....++-+++.+..-+......+..  .+..+....+...+..-+..+.+.|+..+.
T Consensus       117 ~v~~-~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
T TIGR00932       117 AVVV-QVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLKVFLAFLLLVLLGRWLLRP  193 (273)
T ss_pred             HHHH-HHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222 22332  234443245566667788888877766655543221  122222333333333344455555554444


Q ss_pred             hhhh
Q 016764          289 ICNA  292 (383)
Q Consensus       289 ~~~~  292 (383)
                      ..++
T Consensus       194 ~~~~  197 (273)
T TIGR00932       194 VLRL  197 (273)
T ss_pred             HHHH
Confidence            3333

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=96.83  E-value=0.66  Score=46.86  Aligned_cols=104  Identities=16%  Similarity=0.202  Sum_probs=83.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHH-HHHH
Q 016764          142 GFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATF  220 (383)
Q Consensus       142 ~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~-v~T~  220 (383)
                      .++=...|.+++.+++.+..++|...+...+......-+.+|.+.+    .-.+|.  ..++.  +++|||.+.. .+++
T Consensus        65 ~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r----~~~~~~--~Ta~~--gs~PGgas~m~~iA~  136 (352)
T COG3180          65 VILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKR----FSILPG--NTAFL--GSSPGGASAMVSIAQ  136 (352)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH----hcCCCc--chhhH--hcCCchHHHHHHHHH
Confidence            3333458999999999998888988888888888888888999887    223454  44444  9999999875 4888


Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016764          221 LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG  254 (383)
Q Consensus       221 lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g  254 (383)
                      -.|.|. .....+..+=-+.-..+.|+...++.|
T Consensus       137 d~gAd~-~~VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         137 DYGADL-RLVALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             HhCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            889998 788888888888888899999999885

>PRK05326 potassium/proton antiporter; Reviewed

Probab=96.39  E-value=0.71  Score=49.38  Aligned_cols=53  Identities=15%  Similarity=0.033  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHhccCcc--hh--hhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhc
Q 016764          111 LPHVVLGSTMLALVFPPS--FT--WFTARYYAPALGFLMFAVGVNSSEKDFIEAFKR  163 (383)
Q Consensus       111 l~~~vl~~~~lGl~~P~~--~~--~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~  163 (383)
                      +...+++++++|-..+..  ++  ...+.....++.+++|..|++++++++++..+.
T Consensus        33 ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~   89 (562)
T PRK05326         33 LLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGP   89 (562)
T ss_pred             HHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHH
Confidence            344456666666533221  11  111234567899999999999999999976644

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=96.20  E-value=0.38  Score=42.91  Aligned_cols=107  Identities=15%  Similarity=0.166  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHH
Q 016764          136 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS  215 (383)
Q Consensus       136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s  215 (383)
                      ....+..++-...|++.+.+++++..+.+...+...+...++.=..++.+.+    ..+.+.  ..+  +.+++|||...
T Consensus        48 ~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~----~~~~~~--~ta--~La~~PGGl~~  119 (156)
T TIGR03082        48 LLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLAR----LTGVDP--LTA--FLATSPGGASE  119 (156)
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCH--HHH--HHHhCCchHHH
Confidence            3455666666779999999999998877776666555555555555666666    455554  444  46899999987


Q ss_pred             H-HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764          216 N-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL  251 (383)
Q Consensus       216 ~-v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~l  251 (383)
                      . ..+.-.|.|. +.......+=.++-.++.|++..+
T Consensus       120 m~~~A~~~gad~-~~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       120 MAALAAELGADV-AFVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             HHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5 4667778898 677777777777777788876653

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.16  E-value=1.1  Score=48.67  Aligned_cols=77  Identities=18%  Similarity=0.196  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC--hhHHHHHHHHhcCCchh
Q 016764          136 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQ  213 (383)
Q Consensus       136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~--~~~a~GlvL~a~~P~~~  213 (383)
                      +.-..+.++||..|+.++++++++..|+   ++..-..|.++.-+++++++.    .++.+  ..+..|..+..++ ++.
T Consensus        59 laelGvv~LlF~iGLEl~~~~l~~~~~~---~~~~g~~qv~~~~~~~~~~~~----~~g~~~~~al~ig~~la~SS-tai  130 (621)
T PRK03562         59 FAEFGVVLMLFVIGLELDPQRLWKLRRS---IFGGGALQMVACGGLLGLFCM----LLGLRWQVALLIGLGLALSS-TAI  130 (621)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHH-HHH
Confidence            4456888999999999999999875433   222222344443334444444    33433  3444555544333 333


Q ss_pred             HHHHHHH
Q 016764          214 LSNYATF  220 (383)
Q Consensus       214 ~s~v~T~  220 (383)
                      ...++..
T Consensus       131 v~~~L~e  137 (621)
T PRK03562        131 AMQAMNE  137 (621)
T ss_pred             HHHHHHH
Confidence            3344443

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=96.12  E-value=1.1  Score=46.15  Aligned_cols=139  Identities=16%  Similarity=0.135  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH-HHHhhhhccCCChhHHHHHHHHhcCCchhH
Q 016764          136 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI-FGTISVSVFGLPTPIGAGIMLVSCVSGAQL  214 (383)
Q Consensus       136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~-l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~  214 (383)
                      .....+.++||..|+..|.+++++..|+.   ..+...--+..|+.... ...... .++..+.+..|..+. ....+..
T Consensus        61 laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~-g~~~~~al~lg~~l~-~sS~~i~  135 (397)
T COG0475          61 LAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLLLGIL-GLSLIAALFLGAALA-LSSTAIV  135 (397)
T ss_pred             HHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHH-HHHHHHH
Confidence            45668999999999999999999876553   22222223344533222 211000 234444555555543 3334444


Q ss_pred             HHHHHHh--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC-hHHHHHHHHHHHHHHHHHH
Q 016764          215 SNYATFL--TDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD-VKGMVSSILQIVVVPIAAG  279 (383)
Q Consensus       215 s~v~T~l--agGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id-~~~i~~~Lll~VllPl~lG  279 (383)
                      +.++..+  .+.+.-...+....+.-+.+..+..+...+..+...+.+ ...+...+.....+=..+|
T Consensus       136 ~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g  203 (397)
T COG0475         136 LKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG  203 (397)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence            5555543  333321345556666666666666665555433333333 2333434333333333334

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=95.96  E-value=0.23  Score=49.76  Aligned_cols=230  Identities=17%  Similarity=0.288  Sum_probs=118.5

Q ss_pred             chHHHHHHHhhh-HHHHHHHHHHHHHhccCcchhh--hh----hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHH
Q 016764           98 FSLVNILKQSNS-FLPHVVLGSTMLALVFPPSFTW--FT----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAG  170 (383)
Q Consensus        98 ~~~~~~l~~l~~-~l~~~vl~~~~lGl~~P~~~~~--~~----~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~  170 (383)
                      |++++.++++-. .+.+=++.+..+.-++|+....  +.    +.-..+.+++.+|.+|.+++.++....++|...++  
T Consensus         3 ~~~~~~~~kiPgg~m~vpl~~g~~i~tf~P~~~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l~--   80 (326)
T PRK05274          3 MKIKRTIEKIPGGMMLVPLLLGALINTFAPGALYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTLL--   80 (326)
T ss_pred             chHHHHhccCCcceeeHHHHHHHHHHHhCCcceeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhHH--
Confidence            445555444443 2333367788889999995321  11    12345688999999999999999998887755433  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCCCh---hHHHHHHHHhc------CCchhHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 016764          171 YVGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIMLVSC------VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA  241 (383)
Q Consensus       171 l~~~fvl~Plla~~l~~l~~~~~~l~~---~~a~GlvL~a~------~P~~~~s~v~T~lagGd~~~Lal~lt~istlla  241 (383)
                       +.++++-=++++.+++    +++.+.   ....|......      .=++......+...+. .+.-+.....+     
T Consensus        81 -~~k~~~~~~~~~~~~~----~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~-~d~ga~i~lsl-----  149 (326)
T PRK05274         81 -LTKFAVAALVGVIAGK----FIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTK-EDAGAFVLMSL-----  149 (326)
T ss_pred             -HHHHHHHHHHHHHhhh----cchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC-CCcchHHHHHH-----
Confidence             3455554455666665    333221   22222222221      2233333333333322 21122222222     


Q ss_pred             HHHHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhh
Q 016764          242 VFVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIES  319 (383)
Q Consensus       242 ~~~~Pl~l~ll~g~--~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~  319 (383)
                       -.-|+....+.+.  ...++..++...     ++|+++|+.++.+.+++.+...+-...+--..   ........+-+.
T Consensus       150 -~~Gp~~tM~lL~aagla~~p~~~li~a-----llplliG~~lgnl~~~l~~~~~~Gi~~lLp~~---~~~lG~~l~lq~  220 (326)
T PRK05274        150 -EDGPFMTMLALGAAGLASFPPPALVGA-----VLPLLVGFILGNLDPELRQFLGKAVPVLIPFF---AFALGNGIDLGT  220 (326)
T ss_pred             -hhhHHHHHHHHHhhCcccCCCchhhHH-----HHHHHHHHHHHhHHHhhHHHhcCCcEEEHHHH---HHHHhcceeHhH
Confidence             2224333333332  124555544322     29999999999987777666666544311111   111122223333


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          320 VMSPFGLTILLLIITFHLSAFVAGYVVTGLA  350 (383)
Q Consensus       320 i~~~~~~~i~l~~~ll~~~gf~lG~llar~l  350 (383)
                      +.. .++.-++..+..+++....+|+..|.+
T Consensus       221 i~~-~G~~GilL~~~~~~~t~~~~~~~~Rl~  250 (326)
T PRK05274        221 IIT-AGLSGILLGVAVVAVTGIPLYLADRLI  250 (326)
T ss_pred             HHh-cCCcchhhhhhHhhccchhhHhHhhee
Confidence            333 233333444556666677788888765

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.48  E-value=4.4  Score=43.30  Aligned_cols=50  Identities=26%  Similarity=0.410  Sum_probs=33.1

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764          135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT  187 (383)
Q Consensus       135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~  187 (383)
                      ......+.++||..|++++.+++++..   +....+...++++.-+++++++.
T Consensus        59 ~la~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~  108 (558)
T PRK10669         59 ELAELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALSA  108 (558)
T ss_pred             HHHHHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            345568889999999999999997642   33333444555554455555554

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=95.08  E-value=4  Score=41.06  Aligned_cols=168  Identities=21%  Similarity=0.317  Sum_probs=93.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhc
Q 016764          143 FLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLT  222 (383)
Q Consensus       143 l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~la  222 (383)
                      ++++..|.-.|+   ...+.|||..+++...|+.+.  .++..+.    .++.++..+.++-+.+.+=|.++-.+-+.++
T Consensus        74 LIF~GIGAmtDF---gpllanP~~~llGaaAQ~Gif--~t~~~A~----~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA  144 (360)
T PF03977_consen   74 LIFMGIGAMTDF---GPLLANPKTLLLGAAAQFGIF--ATFLGAI----LLGFTPKEAASIGIIGGADGPTSIFVSSKLA  144 (360)
T ss_pred             HHHHHHhHHHhh---HHHHhCHHHHHHHHHHHHhHH--HHHHHHH----HhCCCHHHhhHhhhcccCCCcHHHHHHHhhh
Confidence            345567776655   455569999999999999874  4444444    4477788888888888886655444333333


Q ss_pred             CCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhCCc---------cccC-----hHHHHHHHHHHHHHHH--------HHH
Q 016764          223 DPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIGKR---------LPVD-----VKGMVSSILQIVVVPI--------AAG  279 (383)
Q Consensus       223 gGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g~~---------v~id-----~~~i~~~Lll~VllPl--------~lG  279 (383)
                       -|. --.++..+=| .-+.++.-|-.+.++..+.         -+++     ...++..++..+++|.        .+|
T Consensus       145 -p~L-lgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~G  222 (360)
T PF03977_consen  145 -PHL-LGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFG  222 (360)
T ss_pred             -HHH-HHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence             343 1233333333 2366778888888886421         1122     1233444455555553        345


Q ss_pred             HHHHHH--hhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhh
Q 016764          280 LLLNRF--FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSP  323 (383)
Q Consensus       280 ~llr~~--~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~  323 (383)
                      -++|+.  .+++.+..+..+-.+..+.+-+.++..  -+.+.+...
T Consensus       223 nl~rEsgv~~rLs~taqn~l~nivTi~LGl~vGat--~~a~~fL~~  266 (360)
T PF03977_consen  223 NLLRESGVVERLSKTAQNELMNIVTIFLGLTVGAT--MTAETFLNP  266 (360)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHhcCH
Confidence            555554  244444444444344444444444433  345555553

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=95.00  E-value=3.6  Score=45.92  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHhchh
Q 016764          138 APALGFLMFAVGVNSSEKDFIEAFKRPA  165 (383)
Q Consensus       138 ~~~l~l~mf~~Gl~l~~~~l~~~~r~p~  165 (383)
                      -.++.+.+|..|++++.+.+++.++.+.
T Consensus        76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~  103 (810)
T TIGR00844        76 RILLCLQVFAVSVELPRKYMLKHWVSVT  103 (810)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHhHHHHH
Confidence            3588899999999999999987655443

This model is specific for the fungal members of this family.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=94.84  E-value=4.7  Score=40.10  Aligned_cols=134  Identities=17%  Similarity=0.180  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHh-cc--CcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 016764          110 FLPHVVLGSTMLAL-VF--PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFG  186 (383)
Q Consensus       110 ~l~~~vl~~~~lGl-~~--P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~  186 (383)
                      .+.+.++.++++|- .+  |+..+.-.+......+-.-...+|.++++.|+.+.-.  +.++...+. ....=.+++.++
T Consensus        28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~--~~~~~~~~~-v~~~~~~~~~lg  104 (305)
T PF03601_consen   28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGW--KGLLIIIIV-VILTFLLTYWLG  104 (305)
T ss_pred             HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCc--cHHHHHHHH-HHHHHHHHHHHH
Confidence            45566777777774 32  2222221111223455555666899999999988643  333332222 222224455555


Q ss_pred             -HhhhhccCCChhHHHHHHHHhcCCchhHHHH-HHH---hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          187 -TISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATF---LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       187 -~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v-~T~---lagGd~~~Lal~lt~istlla~~~~Pl~l~ll  252 (383)
                       +    .++++++. .-++=++.+=||.++.+ ...   --+.|. +.++..+.+-..++++..|..-..+
T Consensus       105 ~r----~~~l~~~~-~~Lia~GtsICG~SAi~A~a~~i~a~~~~~-a~ava~V~lfg~vam~~~P~l~~~l  169 (305)
T PF03601_consen  105 RR----LFGLDRKL-AILIAAGTSICGASAIAATAPVIKAKEEDV-AYAVATVFLFGTVAMFLYPLLGHAL  169 (305)
T ss_pred             HH----HhCCCHHH-HHHHHhhcccchHHHHHHHcccccCCCCce-eeeehHHHHHHHHHHHHHHHHHHHh
Confidence             5    67888742 22333555556665543 222   223355 7889999999999999999988875

; GO: 0016021 integral to membrane

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=94.69  E-value=3.6  Score=41.83  Aligned_cols=101  Identities=19%  Similarity=0.202  Sum_probs=63.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHhchhHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHh
Q 016764          143 FLMFAVGVNSSEKDFIEAFKRPAAIFA-GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL  221 (383)
Q Consensus       143 l~mf~~Gl~l~~~~l~~~~r~p~~ll~-~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~l  221 (383)
                      ++++..|.-.|+.   ..+.|||..++ +...|+.+.  ..+..+.    .++.++..+.++-+.+.+=|.++-.+-+.+
T Consensus       110 LIFlGIGAMtDFg---pllanP~~~ll~gaaAQ~GiF--~t~~~A~----~lGF~~~eAAsIgIIGgADGPTaIf~s~kL  180 (399)
T TIGR03136       110 ILFFGIGAMSDIS---FILARPWASITVALFAEMGTF--ATLVIGY----YCGLTPGEAAAVGTIGGADGPMVLFASLIL  180 (399)
T ss_pred             HHHHhccHHhcch---HHHhChHHHHHHHHHHHhhHH--HHHHHHH----HcCCCHHHhhHHhhcccCCccHHHHHHHhh
Confidence            4455677766664   55569999999 799999874  4444444    346777778888777888665554433344


Q ss_pred             cCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 016764          222 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  254 (383)
Q Consensus       222 agGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g  254 (383)
                      + -|. --+++..+=| .-+.++.-|-.+.++..
T Consensus       181 A-p~L-lg~IaVAAYsYMaLVPiiqPpimklLtt  212 (399)
T TIGR03136       181 A-KDL-FVPISIIAYLYLSLTYAGYPYLIKLLVP  212 (399)
T ss_pred             h-hHh-HHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence            3 333 1233333333 23567778888888864

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=94.60  E-value=4.4  Score=45.69  Aligned_cols=111  Identities=17%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHHHHhhhhccCCCh-----hHHHHHHHHhc
Q 016764          135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL-GYIFGTISVSVFGLPT-----PIGAGIMLVSC  208 (383)
Q Consensus       135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Pll-a~~l~~l~~~~~~l~~-----~~a~GlvL~a~  208 (383)
                      .+....+.++||..|+.+|.+.+++..|+  .+.+++. .+ +.|++ +++++..+ .....+.     .+..|+.+...
T Consensus       106 ~la~lGlillmFliGLE~Dl~~lr~~~k~--a~~ia~~-~~-ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~T  180 (832)
T PLN03159        106 TMANLGLLYFLFLVGVEMDISVIRRTGKK--ALAIAIA-GM-ALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVT  180 (832)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHhcchH--HHHHHHH-HH-HHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHh
Confidence            34566888899999999999999875433  2222222 22 23543 44444322 1111111     12222222211


Q ss_pred             CCchhHHHHHH--HhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764          209 VSGAQLSNYAT--FLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL  251 (383)
Q Consensus       209 ~P~~~~s~v~T--~lagGd~~~Lal~lt~istlla~~~~Pl~l~l  251 (383)
                       ..++.+.+++  ++.+-+...+++..+.++-+++.+++-+...+
T Consensus       181 -s~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l  224 (832)
T PLN03159        181 -AFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL  224 (832)
T ss_pred             -hHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1112222333  22344443567777788888777766555443

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.43  E-value=4.4  Score=43.90  Aligned_cols=27  Identities=19%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHh
Q 016764          136 YYAPALGFLMFAVGVNSSEKDFIEAFK  162 (383)
Q Consensus       136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r  162 (383)
                      +.-..+.++||..|+.++++++++..|
T Consensus        59 laelGvv~LLF~iGLel~~~~l~~~~~   85 (601)
T PRK03659         59 FSELGVVFLMFIIGLELNPSKLWQLRR   85 (601)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            445688899999999999999987543

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=94.24  E-value=2.4  Score=42.27  Aligned_cols=107  Identities=7%  Similarity=0.116  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHH
Q 016764          138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY  217 (383)
Q Consensus       138 ~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v  217 (383)
                      ..+-.++=...|++.+.+++++..|.....+...+......=+.++++.+    ..+.|.  .  -.+.+.+|||.....
T Consensus       207 ~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~----~~~~~~--~--t~~La~aPGGl~eM~  278 (318)
T PF05145_consen  207 NAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSR----LTGIDF--L--TALLATAPGGLAEMA  278 (318)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCH--H--HHHHHhCCccHHHHH
Confidence            34445555669999999999987766555555555555555566777766    445543  3  345699999998754


Q ss_pred             -HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016764          218 -ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI  253 (383)
Q Consensus       218 -~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~  253 (383)
                       .+.-.|.|. +.......+=.+.-.++.|++..++.
T Consensus       279 l~A~~l~~d~-~~V~~~q~~Rl~~v~~~~p~~~r~~~  314 (318)
T PF05145_consen  279 LIALALGADV-AFVAAHQVVRLLFVLLLAPFIARWLR  314 (318)
T ss_pred             HHHHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             677788898 78888888888888888888877764

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=94.03  E-value=9.9  Score=40.51  Aligned_cols=51  Identities=20%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhc--cCcchhhhh-hhhHHHHHHHHHHHhcCCCCHHHHHHHHhc
Q 016764          111 LPHVVLGSTMLALV--FPPSFTWFT-ARYYAPALGFLMFAVGVNSSEKDFIEAFKR  163 (383)
Q Consensus       111 l~~~vl~~~~lGl~--~P~~~~~~~-~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~  163 (383)
                      ....+++|+++|..  .|..  ... +......+..++|..|.+++.+++++..+.
T Consensus        25 ~v~lil~Gi~lg~~~~~~~~--~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~   78 (525)
T TIGR00831        25 PIALILAGLLLGLAGLLPEV--PLDREIVLFLFLPPLLFEAAMNTDLRELRENFRP   78 (525)
T ss_pred             HHHHHHHHHHHHhccccCCC--CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34445667777753  1211  011 123456888999999999999999875533

This model is specific for the bacterial members of this family.

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=92.14  E-value=3.9  Score=39.00  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=68.7

Q ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHH
Q 016764          154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM  233 (383)
Q Consensus       154 ~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~l  233 (383)
                      .++.+...||++.++.++..--++--..++.+++    .++++++....+.==+  =+++.+.-.+...|||. +++.+.
T Consensus        77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~----~lg~~~~i~~Sl~pkS--vTtpiAm~vs~~iGG~~-sLta~~  149 (226)
T TIGR00659        77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLAL----LLGLGPEIIASLLPKS--VTTPIAMHVSEMIGGIP-AVTAVF  149 (226)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCcCHHHHHHhhhHH--hhHHHHHHHHHHhCChH-HHHHHH
Confidence            3455555567788888887766666677888887    6788987776554211  13333444789999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 016764          234 TSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       234 t~istlla~~~~Pl~l~ll  252 (383)
                      +.++-+++..+-|.++.++
T Consensus       150 vvitGi~Ga~~g~~ll~~~  168 (226)
T TIGR00659       150 VILTGLLGTVFGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999988887

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=91.72  E-value=1.7  Score=41.06  Aligned_cols=91  Identities=15%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHH
Q 016764          155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT  234 (383)
Q Consensus       155 ~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt  234 (383)
                      ++.+...+|++.++.+....-++--+..+.+++    .++++++....+.-=+.  ++..+.-.+...|||. +++...+
T Consensus        68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~----~lgl~~~~~~Sl~pkSV--TtpiAi~is~~iGG~~-sLta~~V  140 (215)
T PF04172_consen   68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLAR----LLGLSPEIILSLAPKSV--TTPIAIEISEQIGGIP-SLTAVFV  140 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCcCHHHHHHHHHHHh--hHHHHHHHHHHhCChH-HHHHHHH
Confidence            455566677888888888777777777788887    67899988777662211  2333344789999999 8999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 016764          235 SLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       235 ~istlla~~~~Pl~l~ll  252 (383)
                      .++-+++...-|.++.++
T Consensus       141 vitGi~Ga~~g~~llk~~  158 (215)
T PF04172_consen  141 VITGILGAVLGPPLLKLL  158 (215)
T ss_pred             HHHhhHHHHhHHHHHhHc
Confidence            999999999999988886

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=91.55  E-value=5.8  Score=38.00  Aligned_cols=90  Identities=10%  Similarity=0.005  Sum_probs=68.9

Q ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHH
Q 016764          156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTS  235 (383)
Q Consensus       156 ~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~  235 (383)
                      +.+...|+++.++.++.+--++--+.++.+++    .++++++....+.==+  =+++.+.-.+...||+. +++.+.+.
T Consensus        85 q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~----~lgl~~~~~~Sl~pKS--VTtPIAm~is~~iGG~p-sLtA~~Vi  157 (232)
T PRK04288         85 KRDVLKKYWWQILGGIVVGSVCSVLIIYLVAK----LIQLDNAVMASMLPQA--ATTAIALPVSAGIGGIK-EITSFAVI  157 (232)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCcCHHHHHHHhhHh--hhHHHHHHHHHHhCCcH-HHHHHHHH
Confidence            44445567888888888777777777888887    6799987766554111  13333445789999999 89999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 016764          236 LSTATAVFVTPLLSLLL  252 (383)
Q Consensus       236 istlla~~~~Pl~l~ll  252 (383)
                      ++-+++.++-|.++.++
T Consensus       158 itGi~Gai~g~~llk~~  174 (232)
T PRK04288        158 FNAVIIYALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            99999999999988887

>PRK10711 hypothetical protein; Provisional

Probab=91.23  E-value=2.5  Score=40.48  Aligned_cols=91  Identities=14%  Similarity=0.011  Sum_probs=69.9

Q ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHH
Q 016764          155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT  234 (383)
Q Consensus       155 ~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt  234 (383)
                      ++.+...++++.++.+...--++--..++++++    .+++++++...+.==+.  +++.+.-.+...||+. +++...+
T Consensus        79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~----~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~-sLta~~V  151 (231)
T PRK10711         79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVAL----WMGATPEIAASILPKSV--TTPIAMAVGGSIGGIP-AISAVCV  151 (231)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcH-HHHHHHH
Confidence            344445567888888888777777788888888    67999987776652111  3333344789999999 8999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 016764          235 SLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       235 ~istlla~~~~Pl~l~ll  252 (383)
                      .++-+++.++-|.++.++
T Consensus       152 iitGi~Ga~~g~~llk~~  169 (231)
T PRK10711        152 IFVGILGAVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999999887

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=91.22  E-value=2.5  Score=42.11  Aligned_cols=127  Identities=17%  Similarity=0.169  Sum_probs=66.9

Q ss_pred             HHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 016764          115 VLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFG  194 (383)
Q Consensus       115 vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~  194 (383)
                      ++.++++|-+.++.-+..+ +-.+..+.+..|.+|.+++++++.+.-  +..++++++.-. +.=.+.+.+.+    .++
T Consensus       173 ILiGmilGNld~~~~~~l~-~Gi~f~I~f~~f~LG~~lnl~~I~~~G--~~GIlL~v~vv~-~t~~~~~~i~r----llg  244 (312)
T PRK12460        173 LVLGMILGNLDPDMRKFLT-KGGPLLIPFFAFALGAGINLSMLLQAG--LAGILLGVLVTI-VTGFFNIFADR----LVG  244 (312)
T ss_pred             HHHHHHHhccchhhHHHHh-ccceEeHHHHHHHhcCCeeHHHHHHhC--hHHHHHHHHHHH-HHHHHHHHHHH----HhC
Confidence            3445555555443333333 445568888889999999999998753  444555444332 23344556666    456


Q ss_pred             CChhHHHHHHHH---hcCCchhHHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          195 LPTPIGAGIMLV---SCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       195 l~~~~a~GlvL~---a~~P~~~~s~v-~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll  252 (383)
                      .+...  |+.+-   +.+=|+.++.. ..-..+.-. +.|......+.+...++.|++..++
T Consensus       245 ~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~~-~~Ataqvaa~vivTail~P~~t~~~  303 (312)
T PRK12460        245 GTGIA--GAAASSTAGNAVATPLAIAAADPSLAPVA-AAATAQVAASVIVTAILTPLLTSWV  303 (312)
T ss_pred             CChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66643  33333   11112222111 111112222 4556666666666666666666655

>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit

Probab=90.72  E-value=11  Score=37.79  Aligned_cols=168  Identities=17%  Similarity=0.284  Sum_probs=85.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCC------ChhHHHHHHHHhcCCchhHHH
Q 016764          143 FLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL------PTPIGAGIMLVSCVSGAQLSN  216 (383)
Q Consensus       143 l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l------~~~~a~GlvL~a~~P~~~~s~  216 (383)
                      ++++..|.-.|+   ...+.||+..+++...|+.+.=  .+..+.    .++.      +...+..+-+.+.+=|.++-.
T Consensus        68 LIFlGIGAmtDF---gpllanP~~~llGaaAQ~GiF~--t~~~A~----~lGf~~~~~~~~~eAAsIgIIGgADGPt~If  138 (354)
T TIGR01109        68 LIFMGIGALTDF---GPLLANPRTLLLGAAAQFGIFA--TVFGAL----TLNFFGIISFSLPQAAAIGIIGGADGPTAIY  138 (354)
T ss_pred             HHHHhccHHhhh---HHHHhChHHHHHHHHHHhhHHH--HHHHHH----HhCCCcccccChhhceeeeeeccCCCchhhh
Confidence            345567776665   4555699999999999998753  334333    2233      445566666667665544333


Q ss_pred             HHHHhcCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhCCc---c------ccC-----hHHHHHHHHHHHHHHH-----
Q 016764          217 YATFLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIGKR---L------PVD-----VKGMVSSILQIVVVPI-----  276 (383)
Q Consensus       217 v~T~lagGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g~~---v------~id-----~~~i~~~Lll~VllPl-----  276 (383)
                      +-+.++ -|. --+++..+=| .-+.++.-|-.+.++..++   +      +++     ...++..++..+++|.     
T Consensus       139 ~s~~la-p~L-lg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~P~a~pLi  216 (354)
T TIGR01109       139 LSGKLA-PEL-LAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLIPKALPLV  216 (354)
T ss_pred             hHhhhh-hHH-HHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHccchHHHH
Confidence            222333 332 1222222222 2356677788888875421   1      121     1234444555555553     


Q ss_pred             ---HHHHHHHHH--hhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhh
Q 016764          277 ---AAGLLLNRF--FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSP  323 (383)
Q Consensus       277 ---~lG~llr~~--~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~  323 (383)
                         .+|-++|+.  .+++.+..+..+-.+..+.+-+.++..  -+.+.+...
T Consensus       217 g~Lm~GnllrEsGv~~rl~~taqn~l~nivTifLGl~vG~~--~~A~~fL~~  266 (354)
T TIGR01109       217 GMLMFGNLMRESGVVERLSKTASNELLNIVTILLGLSVGAK--MRADKFLTP  266 (354)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccHHhhCCh
Confidence               345555554  244444444444333333333333332  355566554

This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.

>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional

Probab=90.27  E-value=20  Score=36.75  Aligned_cols=104  Identities=17%  Similarity=0.238  Sum_probs=59.3

Q ss_pred             HHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhh--hhccCCChhHHHHHHHHhcCCchhHHHHHHHh
Q 016764          144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIS--VSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL  221 (383)
Q Consensus       144 ~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~--~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~l  221 (383)
                      +++..|.-.|+   ...+.|||..+++...|+.+.-.+  ..+.++  ++..+.+...+.++-+.+.+=|.++-.+-+.+
T Consensus       140 IF~GIGAMtDF---gpLlanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL  214 (433)
T PRK15477        140 IFMGVGAMTDF---GPLLANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL  214 (433)
T ss_pred             HHHhccHHhcc---hHHhhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence            44567776665   455569999999999999875433  333211  01124566667666666777555444333333


Q ss_pred             cCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 016764          222 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  254 (383)
Q Consensus       222 agGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g  254 (383)
                      + -|. --+++...=| .-+.|+.-|-.+.++..
T Consensus       215 A-P~L-lg~IaVAAYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15477        215 A-PEL-LGAIAVAAYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             h-hHh-HHHHHHHHHHHHHHHhcccchHHHhccC
Confidence            3 333 1233333333 23567777888888754

>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional

Probab=90.24  E-value=20  Score=36.73  Aligned_cols=104  Identities=17%  Similarity=0.238  Sum_probs=59.2

Q ss_pred             HHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhh--hhccCCChhHHHHHHHHhcCCchhHHHHHHHh
Q 016764          144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIS--VSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL  221 (383)
Q Consensus       144 ~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~--~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~l  221 (383)
                      +++..|.-.|+   ...+.|||..+++...|+.+.-.+  ..+.++  ++..+.+...+.++-+.+.+=|.++-.+-+.+
T Consensus       140 IF~GIGAMtDF---gpLlanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL  214 (433)
T PRK15476        140 IFMGVGAMTDF---GPLLANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL  214 (433)
T ss_pred             HHHhccHHhcc---hHHhhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence            44557776665   455569999999999999875433  333211  01124566667666666777555444333333


Q ss_pred             cCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 016764          222 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  254 (383)
Q Consensus       222 agGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g  254 (383)
                      + -|. --+++...=| .-+.|+.-|-.+.++..
T Consensus       215 A-P~L-lg~IaVAAYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15476        215 A-PEL-LGAIAVAAYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             h-hHh-HHHHHHHHHHHHHHHhcccchHHHhccC
Confidence            3 333 1233333333 23567777888888754

>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional

Probab=90.05  E-value=21  Score=36.55  Aligned_cols=104  Identities=17%  Similarity=0.238  Sum_probs=59.3

Q ss_pred             HHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhh--hhccCCChhHHHHHHHHhcCCchhHHHHHHHh
Q 016764          144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIS--VSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL  221 (383)
Q Consensus       144 ~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~--~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~l  221 (383)
                      +++..|.-.|+   ...+.|||..+++...|+.+.-.+  ..+.++  ++..+.+...+.++-+.+.+=|.++-.+-+.+
T Consensus       140 IF~GIGAMtDF---gpLlanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL  214 (433)
T PRK15475        140 IFMGVGAMTDF---GPLLANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL  214 (433)
T ss_pred             HHHhccHHhcc---hHHhhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence            44557776655   455569999999999999875433  333211  01124566667766666777555444333333


Q ss_pred             cCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 016764          222 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  254 (383)
Q Consensus       222 agGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g  254 (383)
                      + -|. --+++...=| .-+.|+.-|-.+.++..
T Consensus       215 A-P~L-lg~IaVAAYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15475        215 A-PEL-LGAIAVAAYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             h-hHh-HHHHHHHHHHHHHHHhcccchHHHhccC
Confidence            3 333 1233333333 23567777888888854

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=90.04  E-value=26  Score=36.25  Aligned_cols=179  Identities=19%  Similarity=0.347  Sum_probs=89.5

Q ss_pred             HHHHHHHhhhH-HHHHHHHHHHH--Hh-ccCcchhh---hhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHH
Q 016764          100 LVNILKQSNSF-LPHVVLGSTML--AL-VFPPSFTW---FTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYV  172 (383)
Q Consensus       100 ~~~~l~~l~~~-l~~~vl~~~~l--Gl-~~P~~~~~---~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~  172 (383)
                      +++..++++|+ +|--++++.+.  +. ..|+.+.+   +.+.+....+...+-+.|++-+.+++++.- +|-.......
T Consensus        22 Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg-~~l~~~~~~~  100 (398)
T TIGR00210        22 LVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGG-KPLLIFLATA  100 (398)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhCh-HHHHHHHHHH
Confidence            55777888884 45545554442  12 22443321   111223334444444588888888877642 2222222221


Q ss_pred             -HHHHHHHHHHHHHHHhhhhccCCChhHHHHHHH--HhcCC--ch--hHHHHHHHh--cCCCCchhHHHHHHHHHHHHHH
Q 016764          173 -GQFVVKPILGYIFGTISVSVFGLPTPIGAGIML--VSCVS--GA--QLSNYATFL--TDPPLAPLSIVMTSLSTATAVF  243 (383)
Q Consensus       173 -~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL--~a~~P--~~--~~s~v~T~l--agGd~~~Lal~lt~istlla~~  243 (383)
                       .-....=.++.+++.    .++++|  ..|++.  ++..-  |+  .....+...  ..+-. +++++..++..+.+.+
T Consensus       101 ~~l~~~Qn~vGv~la~----~~gl~P--~~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~-~lgla~AT~GLv~g~l  173 (398)
T TIGR00210       101 VGFLVIQNAVGIGMAS----LLGQAP--LMGLLAGSITLSGGHGTGAAWSPVFYDNYGFRNAT-EIAIACATFGLVFGGI  173 (398)
T ss_pred             HHHHHHHHHHHHHHHH----HcCCCh--HHHHHhhCccCCCCCcHHHHHHHHHHHHcCchhHH-HHHHHHHHHHHHHHHH
Confidence             111222244555555    678888  667663  22222  22  223344332  12223 4677777777777776


Q ss_pred             H-HHHHHHHhhC-----C--c----c-----------ccChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016764          244 V-TPLLSLLLIG-----K--R----L-----------PVDVKGMVSSILQIVVVPIAAGLLLNRFFP  287 (383)
Q Consensus       244 ~-~Pl~l~ll~g-----~--~----v-----------~id~~~i~~~Lll~VllPl~lG~llr~~~p  287 (383)
                      . .|+.=++.-.     +  +    .           ..+..+++.++ ..+.+-+.+|..+.++..
T Consensus       174 iGgpi~~~lirk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~i~iai~iG~~i~~~l~  239 (398)
T TIGR00210       174 IGGPVAKFLIIRNKLEPNCENDTKDVTIGFERPQDNRQITYNSLIETI-ALIAVCLLVGYELNDLVA  239 (398)
T ss_pred             HHHHHHHHHHHcCCCCCCCCcccccccccccccccccccCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            6 5665554311     0  0    0           02233444444 577778888888887654

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=88.58  E-value=31  Score=35.19  Aligned_cols=179  Identities=13%  Similarity=0.241  Sum_probs=90.8

Q ss_pred             HHHHHHHhhhH-HHHHHHHHHHHHhccCcchhhhh------hh-hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHH
Q 016764          100 LVNILKQSNSF-LPHVVLGSTMLALVFPPSFTWFT------AR-YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY  171 (383)
Q Consensus       100 ~~~~l~~l~~~-l~~~vl~~~~lGl~~P~~~~~~~------~~-~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l  171 (383)
                      +++.+++++|+ .|--++++.+ +.+.+.......      +. +....+...+-.+|++.+.+.+++..|+-.......
T Consensus        22 Lr~ki~~lqk~~IPasvIgGli-~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~  100 (368)
T PF03616_consen   22 LRAKIPFLQKLFIPASVIGGLI-FAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIA  100 (368)
T ss_pred             HHHHhHHHHHccCCchHHHHHH-HHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHH
Confidence            56778888884 4544454444 333332221111      11 222333333445899999988887654322211111


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcC-----CchhHH--HHHHHhcC--CCCchhHHHHHHHHHHHHH
Q 016764          172 VGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCV-----SGAQLS--NYATFLTD--PPLAPLSIVMTSLSTATAV  242 (383)
Q Consensus       172 ~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~-----P~~~~s--~v~T~lag--Gd~~~Lal~lt~istlla~  242 (383)
                      ....++-=+++.+++.    +++++|.  .|++. +..     +|+..+  +.+....|  |-. +++++..++..+.+.
T Consensus       101 ~~~~~~Q~~vG~~la~----l~gl~p~--~Gll~-Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~-~vg~a~AT~Glv~G~  172 (368)
T PF03616_consen  101 IILAFLQNIVGLGLAK----LLGLDPL--FGLLA-GSIGFTGGHGTAAAFGPTFEELYGWEGAT-SVGMAAATFGLVVGG  172 (368)
T ss_pred             HHHHHHHHHHHHHHHH----HhCCCch--HHHHh-ccccccCCccHHHHHHHHHHHhcChhhhH-HHHHHHHHHHHHHHH
Confidence            1122233344556665    5677774  56533 222     333333  34544311  222 467777777777665


Q ss_pred             HH-HHHHHHHhhC-----C-------------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016764          243 FV-TPLLSLLLIG-----K-------------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR  288 (383)
Q Consensus       243 ~~-~Pl~l~ll~g-----~-------------------~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~  288 (383)
                      ++ .|+.=++.-.     +                   .-+++..+++..+ .++.+.+.+|..++.+..+
T Consensus       173 liGgpi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l-~~i~i~~~~G~~i~~~l~~  242 (368)
T PF03616_consen  173 LIGGPIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHL-ALILIAIGLGYIISALLKK  242 (368)
T ss_pred             HHHHHHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            54 7875554310     0                   0113455555555 4778888888888877643

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG2855 Predicted membrane protein [Function unknown]

Probab=87.31  E-value=35  Score=34.44  Aligned_cols=132  Identities=17%  Similarity=0.198  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhccCcchhhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764          111 LPHVVLGSTMLALVFPPSFTWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT  187 (383)
Q Consensus       111 l~~~vl~~~~lGl~~P~~~~~~~---~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~  187 (383)
                      +.+.++.++++|.+ ++......   +-..+..+-+-...+|.+++++|+.+.-.+--.+.   +......=+.++.+++
T Consensus        40 l~lAIllGi~l~~l-~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~---~~~l~~t~~~~~~lg~  115 (334)
T COG2855          40 LTLAILLGILLGIL-PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLII---AITLSSTFLFAYFLGK  115 (334)
T ss_pred             HHHHHHHHHHHhcc-ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHH---HHHHHHHHHHHHHHHH
Confidence            55667788888833 33332221   12345566666666899999999988643322221   2222223355777777


Q ss_pred             hhhhccCCChhHHHHHHHHhcCCchhHHHHHH-Hhc---CCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT-FLT---DPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       188 l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T-~la---gGd~~~Lal~lt~istlla~~~~Pl~l~ll  252 (383)
                          .+++|...+ -++=+++.=||.++.+-+ -..   +-|. +.++..+.+-..++.+..|..-.++
T Consensus       116 ----~lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~ev-a~aIa~V~lfgtia~llyP~l~~~l  178 (334)
T COG2855         116 ----LLGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEV-AVAIAVVVLFGTLAMLLYPLLYPLL  178 (334)
T ss_pred             ----HhCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCcccc-ceehhhHHHHHHHHHHHHHHHHHHh
Confidence                678887433 233356666777664322 222   2345 6777777777778889999887765

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=87.01  E-value=32  Score=35.00  Aligned_cols=105  Identities=11%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHH-
Q 016764          139 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-  217 (383)
Q Consensus       139 ~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v-  217 (383)
                      .+-.++....|++.+-..+++..|--...+...+..+.+.=..++++.+    ..+.|.  ..  .+.+.+|||..... 
T Consensus       241 va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~----~~~i~~--~t--a~La~sPGGl~~ma~  312 (352)
T COG3180         241 VAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSW----LTGIDL--NT--AYLATSPGGLDTMAA  312 (352)
T ss_pred             HHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHH----hcCCCH--HH--HHHHcCCCcHHHHHH
Confidence            3444555668999999999887665555555555555665666777776    445554  33  35599999998765 


Q ss_pred             HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          218 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       218 ~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll  252 (383)
                      .+...+-|. +...++..+=-+.-.++.|.+..++
T Consensus       313 ~A~~l~ad~-a~V~a~q~lRll~il~i~p~l~r~l  346 (352)
T COG3180         313 IAAALGADP-AFVMALQVLRLLFILLLGPALARFL  346 (352)
T ss_pred             HHHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555588 7888888887777777778776665

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=85.60  E-value=22  Score=38.68  Aligned_cols=123  Identities=19%  Similarity=0.266  Sum_probs=67.8

Q ss_pred             HHHHHhccCcch--hhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016764          118 STMLALVFPPSF--TWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSV  192 (383)
Q Consensus       118 ~~~lGl~~P~~~--~~~~---~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~  192 (383)
                      +.+.|...++.-  ....   ++.--..+.+.+...|+++|+..+.+   +|..++...+.-++..++..++.++    .
T Consensus       246 AFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~----~  318 (621)
T PRK03562        246 AFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLAR----P  318 (621)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            445666666531  1111   12223355666667899999977764   4555555555667888888888887    4


Q ss_pred             cCCCh--hHHHHHHHHhcCCchhHHHHHHHh--cCC--CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          193 FGLPT--PIGAGIMLVSCVSGAQLSNYATFL--TDP--PLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       193 ~~l~~--~~a~GlvL~a~~P~~~~s~v~T~l--agG--d~~~Lal~lt~istlla~~~~Pl~l~ll  252 (383)
                      ++.+.  ....|+   ..+++|-.+-+....  ..|  |. .....++ +..+++.+++|++..++
T Consensus       319 ~g~~~~~a~~~gl---~L~~~Gef~~vl~~~a~~~~~i~~-~~~~~lv-~~v~lS~~~tP~l~~~~  379 (621)
T PRK03562        319 LGVPRKQRRWFAV---LLGQGGEFAFVVFGAAQMANVLEP-EWAKLLT-LAVALSMAATPLLLVLL  379 (621)
T ss_pred             hCCCHhHHHHHHH---HHhccccHHHHHHHHHHHCCCCCH-HHHHHHH-HHHHHHHHHHHHHHHhh
Confidence            55544  445554   334555555443222  222  22 2222222 35567777888776553

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=85.56  E-value=2  Score=42.71  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcccCh----HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016764          271 IVVVPIAAGLLLNRFFPRICNAIRPFLPP----LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV  346 (383)
Q Consensus       271 ~VllPl~lG~llr~~~p~~~~~i~~~l~~----ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~ll  346 (383)
                      ..++.+++|++++.+..+..+++++-.+.    +-..++++.   .+..+-+.+.+ .++..++...+.....+.++|++
T Consensus        28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl---G~~l~~~~i~~-~G~~~~~~~~~~v~~~~~~~~~l  103 (305)
T PF03601_consen   28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL---GFRLSFSDILA-LGWKGLLIIIIVVILTFLLTYWL  103 (305)
T ss_pred             HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH---CccccHHHHHH-hCccHHHHHHHHHHHHHHHHHHH
Confidence            44567779999997433333444443332    223333221   12223333444 35444566677778888999999


Q ss_pred             HHHhhhccccccccceeeEeeeccCChHHhhhhh
Q 016764          347 TGLAFAEAHDVKALQRTLSYETGVMFLYNKILYS  380 (383)
Q Consensus       347 ar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA  380 (383)
                      ++++++.++   +...-++-.++..=.+-+++++
T Consensus       104 g~r~~~l~~---~~~~Lia~GtsICG~SAi~A~a  134 (305)
T PF03601_consen  104 GRRLFGLDR---KLAILIAAGTSICGASAIAATA  134 (305)
T ss_pred             HHHHhCCCH---HHHHHHHhhcccchHHHHHHHc
Confidence            944556653   4445555555555555444444

; GO: 0016021 integral to membrane

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=85.36  E-value=0.079  Score=53.08  Aligned_cols=147  Identities=18%  Similarity=0.267  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHH--HHHHHHh-hhhccCCChhHHHHHHHHhcCCc
Q 016764          135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTI-SVSVFGLPTPIGAGIMLVSCVSG  211 (383)
Q Consensus       135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Pll--a~~l~~l-~~~~~~l~~~~a~GlvL~a~~P~  211 (383)
                      ......+.++||..|.++|.+++++..++.-....   ..++ .|..  ++.+... +..-.+.......|.++....|+
T Consensus        50 ~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~  125 (380)
T PF00999_consen   50 LLAEIGLAFLLFEAGLELDIKELRRNWRRALALGL---VGFL-LPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPA  125 (380)
T ss_dssp             SSHHHHS--SSHHHHTTGGGG-----------------------------------------------TTHHHHTT--HH
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccccc---ceee-ehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccccc
Confidence            56778999999999999999999987666332221   1221 2222  2222210 00012444556666666666666


Q ss_pred             hhHHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          212 AQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF  286 (383)
Q Consensus       212 ~~~s~v-~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~  286 (383)
                      .....+ =....+++.-.+....+.++...+.+...+..... ++....+.......++..+..=.++|...++..
T Consensus       126 ~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (380)
T PF00999_consen  126 IVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQLLLSFLWIILIGIVIGLLFGWLL  200 (380)
T ss_dssp             HHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-----------------------------------------
T ss_pred             chhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccchhcchhhhhhhheeeecccchHH
Confidence            555433 22344555434455667777888887777766665 333444544444444444444444444444433

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=85.16  E-value=32  Score=31.90  Aligned_cols=125  Identities=18%  Similarity=0.260  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHH--HHHHHH-hchhHHHHHHHHHHHHHHHH-HHHHHHhh
Q 016764          114 VVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEK--DFIEAF-KRPAAIFAGYVGQFVVKPIL-GYIFGTIS  189 (383)
Q Consensus       114 ~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~--~l~~~~-r~p~~ll~~l~~~fvl~Pll-a~~l~~l~  189 (383)
                      .++.+.++|+......+.. +....+.+.+++|.+|+++.-+  .+++.. -+++.+.+.+..  ++--++ ++..+.  
T Consensus         4 ~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t--IlGSllgg~l~~~--   78 (191)
T PF03956_consen    4 ALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT--ILGSLLGGLLASL--   78 (191)
T ss_pred             eHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHH--
Confidence            3577889999888774433 4678899999999999988655  343333 234444433332  222233 333333  


Q ss_pred             hhccCCChhHHHHHHHHhcCCchhH--HHHHHHhcCCCCchhHHHHHHHHH----HHHHHHHHHHHHHh
Q 016764          190 VSVFGLPTPIGAGIMLVSCVSGAQL--SNYATFLTDPPLAPLSIVMTSLST----ATAVFVTPLLSLLL  252 (383)
Q Consensus       190 ~~~~~l~~~~a~GlvL~a~~P~~~~--s~v~T~lagGd~~~Lal~lt~ist----lla~~~~Pl~l~ll  252 (383)
                        +++.+.  ..++.+.+  --|-.  |.++-...+| . .+. +...++|    +++.+.+|++...+
T Consensus        79 --ll~~~~--~~~lav~s--G~GwYSlsg~~i~~~~~-~-~~G-~iafl~n~~RE~~a~~~~P~~~r~~  138 (191)
T PF03956_consen   79 --LLGLSL--KESLAVAS--GFGWYSLSGVLITQLYG-P-ELG-TIAFLSNLFREILAIILIPLLARYF  138 (191)
T ss_pred             --HhcCCH--HHHHHHHc--cCcHHHhHHHHHHhhhC-H-HHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              345554  33333222  11222  2333222233 1 232 3334444    47888999988843

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>TIGR00698 conserved hypothetical integral membrane protein

Probab=85.10  E-value=46  Score=33.64  Aligned_cols=133  Identities=11%  Similarity=-0.001  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHhcc-Ccchhhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 016764          111 LPHVVLGSTMLALVF-PPSFTWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFG  186 (383)
Q Consensus       111 l~~~vl~~~~lGl~~-P~~~~~~~---~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~  186 (383)
                      +.+.++.++++|-.+ |+..+..+   +-.....+-.-...+|.+++++|+.+.-.  +.+......-...+ ++++.++
T Consensus        34 ~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~--~~l~~~~~~v~~~~-~~~~~~g  110 (335)
T TIGR00698        34 LFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGP--NEIVADTLILTSTF-FLTVFLG  110 (335)
T ss_pred             HHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhH--HHHHHHHHHHHHHH-HHHHHHH
Confidence            344566666666533 22222222   11223455555566899999999987643  33222222211111 2233343


Q ss_pred             -HhhhhccCCChhHHHHHHHHhcCCchhHHHH-HHHhcC---CCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          187 -TISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTD---PPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       187 -~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v-~T~lag---Gd~~~Lal~lt~istlla~~~~Pl~l~ll  252 (383)
                       +    .++++++.+ -++=.+.+=||.++.+ .....+   -|. ++++..+.+-..++.+..|++-.++
T Consensus       111 ~k----~l~l~~~~~-~Lia~GtsICGaSAi~A~a~~i~A~~~~~-a~ava~V~lfgt~am~l~P~l~~~l  175 (335)
T TIGR00698       111 SS----RLKLDKQMS-ILLGAGSSICGAAAVAAIEPVIKAEKEKV-SVAIAIVVIFGTTGIFLYPSIYHYA  175 (335)
T ss_pred             HH----HhCCChhHH-HHHHcchhHHHHHHHHHhccccCCCccce-eeeehHHHHHHHHHHHHHHHHHHHH
Confidence             4    567776432 2222444446655433 222222   355 6888888888999999999987766

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=84.39  E-value=15  Score=35.03  Aligned_cols=88  Identities=22%  Similarity=0.193  Sum_probs=68.3

Q ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhH---HHHHHHhcCCCCchhHH
Q 016764          155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL---SNYATFLTDPPLAPLSI  231 (383)
Q Consensus       155 ~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~---s~v~T~lagGd~~~Lal  231 (383)
                      |++....|+|+.++.+.+.--++-=..++++++    .+++++++...+     .|=...   +.-.+...||-. +++.
T Consensus        81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak----~~g~~~~~~~Sl-----~PkSvTTpiAm~vs~~iGGip-~lta  150 (230)
T COG1346          81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAK----LFGLSPELILSL-----LPKSVTTPIAMEVSESIGGIP-ALTA  150 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHh-----cccccccHHHHHHHHhcCCch-HHHH
Confidence            555566678899888888766666677788887    789998766544     464333   334789999998 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 016764          232 VMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       232 ~lt~istlla~~~~Pl~l~ll  252 (383)
                      ..+.++-+++-++-|.++..+
T Consensus       151 v~Vi~tGi~Gavlg~~llk~~  171 (230)
T COG1346         151 VFVILTGILGAVLGPLLLKLL  171 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988887

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=83.22  E-value=60  Score=33.55  Aligned_cols=181  Identities=17%  Similarity=0.292  Sum_probs=95.7

Q ss_pred             chHHHHHHHhhhH-HHHHHHHHHHHHhccCcchhhhh-----hhhHHHHHHHHHH-HhcCCCCHHHHHHHHhchhHHHHH
Q 016764           98 FSLVNILKQSNSF-LPHVVLGSTMLALVFPPSFTWFT-----ARYYAPALGFLMF-AVGVNSSEKDFIEAFKRPAAIFAG  170 (383)
Q Consensus        98 ~~~~~~l~~l~~~-l~~~vl~~~~lGl~~P~~~~~~~-----~~~i~~~l~l~mf-~~Gl~l~~~~l~~~~r~p~~ll~~  170 (383)
                      ..++++++++++| .|--++++.+..++.|-..+...     +.-++-.+.+++| .+|++-+++.+++.-|.- .+.+.
T Consensus        22 ~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~fmliFFttiglsa~~~~lkkgGk~l-~if~~  100 (404)
T COG0786          22 RFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDVFMLIFFATIGLSASFKLLKKGGKKL-AIFLA  100 (404)
T ss_pred             HHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCCcccccHHHHHHHHHhccccchhHHHhcChhH-HHHHH
Confidence            3466888888884 45445666655555554432111     1223334444444 499999999998765442 22221


Q ss_pred             HHHHH-HHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCC-------chhHHHHHHHhcCCCC-chhHHHHHHHHHHHH
Q 016764          171 YVGQF-VVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVS-------GAQLSNYATFLTDPPL-APLSIVMTSLSTATA  241 (383)
Q Consensus       171 l~~~f-vl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P-------~~~~s~v~T~lagGd~-~~Lal~lt~istlla  241 (383)
                      ...-+ ++-=.++.+++.    +.+++|  ..|++. +..+       ++.+++.+..+ |-+. -+++++..+...+.+
T Consensus       101 ~a~~l~~~Qn~igi~la~----~lgidp--l~glla-gsIsl~GGHGtaAA~~~~f~~~-G~~~A~~va~A~ATfGlv~G  172 (404)
T COG0786         101 TAAGLAVLQNFIGIGLAK----LLGLDP--LIGLLA-GSISLVGGHGTAAAWGPTFEDL-GAEGATEVAMASATFGLVAG  172 (404)
T ss_pred             HHHHHHHHHHHHHHHHHH----HcCccH--HHHHHh-cceeecCCCchHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHh
Confidence            11111 111233444554    557777  566654 2232       22234556555 3222 134555566666666


Q ss_pred             HHH-HHHHHHHhhC--------Cc----------------cccChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016764          242 VFV-TPLLSLLLIG--------KR----------------LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR  288 (383)
Q Consensus       242 ~~~-~Pl~l~ll~g--------~~----------------v~id~~~i~~~Lll~VllPl~lG~llr~~~p~  288 (383)
                      .+. .|+-=++.-.        +.                ..+|...+.+. +.++.+-+.+|..+.++.++
T Consensus       173 gliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~i~i~~~vG~~i~~~l~~  243 (404)
T COG0786         173 GLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIET-LAIIAICLAVGKIINQLLKS  243 (404)
T ss_pred             HhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence            554 6776666521        00                12344344444 46888889999998888754

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=82.73  E-value=44  Score=36.20  Aligned_cols=126  Identities=15%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             HHHHHHhccCcchh--hhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016764          117 GSTMLALVFPPSFT--WFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS  191 (383)
Q Consensus       117 ~~~~lGl~~P~~~~--~~~---~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~  191 (383)
                      ++.+.|..+|+.-.  ...   ++.-...+.+.+...|+++++..+.+   +|..++...+.-++..++..++.++    
T Consensus       242 GAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~----  314 (601)
T PRK03659        242 GTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLAR----  314 (601)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            34456777775321  111   12223456666677899999987764   4555555556667788888888877    


Q ss_pred             ccCCChh--HHHHHHHHhcCCchhHHHHHHHh--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764          192 VFGLPTP--IGAGIMLVSCVSGAQLSNYATFL--TDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (383)
Q Consensus       192 ~~~l~~~--~a~GlvL~a~~P~~~~s~v~T~l--agGd~~~Lal~lt~istlla~~~~Pl~l~ll  252 (383)
                      .++.+..  ...|+.   ..|.|-.+-+....  ..|-..+-.........+++.+++|++..++
T Consensus       315 ~~g~~~~~al~~g~~---L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~  376 (601)
T PRK03659        315 LYGLRSSERMQFAGV---LSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI  376 (601)
T ss_pred             HhCCCHHHHHHHHHH---HhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566553  344433   46666666543222  2221111122222445566667788776653

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=81.45  E-value=83  Score=33.96  Aligned_cols=74  Identities=11%  Similarity=0.120  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhcc---Ccch-hhhh-hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHH
Q 016764          112 PHVVLGSTMLALVF---PPSF-TWFT-ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIF  185 (383)
Q Consensus       112 ~~~vl~~~~lGl~~---P~~~-~~~~-~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~-ll~~l~~~fvl~Plla~~l  185 (383)
                      .+.++.|+++|...   +... ..+. +......+..++|-.|.+++.+++++.++.--. ...+.+.+.+++-...+.+
T Consensus        39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~  118 (559)
T TIGR00840        39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI  118 (559)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777542   2110 0111 234456889999999999999999987754222 2233344555554545544

This model is specific for the eukaryotic members members of this family.

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=80.05  E-value=22  Score=35.41  Aligned_cols=63  Identities=21%  Similarity=0.220  Sum_probs=40.4

Q ss_pred             HhhhHHHHHHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHH
Q 016764          106 QSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVG  173 (383)
Q Consensus       106 ~l~~~l~~~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~  173 (383)
                      .+...+|  ++.+.++|-+-|+.-+.+. +..+..+.++-|..|.+++++++.+.-  -..+++++.+
T Consensus       171 lv~~ilP--lliG~ilGNLD~~~r~fl~-~~~~~lIpFf~FaLGaginl~~i~~aG--l~GIlLGl~v  233 (314)
T TIGR00793       171 FVGAVLP--FLVGFALGNLDPELRDFFS-KAVQTLIPFFAFALGNTIDLGVIIQTG--LLGILLGVSV  233 (314)
T ss_pred             HHHHHHH--HHHHHHHhcCCHHHHHHhc-cCCCeeeehhhhhhcCCCCHHHHHHhC--cchHHHHHHH
Confidence            3444455  3556677777776665554 667778888889999999998886531  2334444443

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	383
3zuy_A	323	Crystal Structure Of A Bacterial Homologue Of The B		2e-21
3zux_A	332	Crystal Structure Of A Bacterial Homologue Of The B		4e-21

>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 19/249 (7%)
Query: 126 PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 185
           P +F W    Y    LG +MF +G+     DF   FK P  +  G + QF + P   ++ 
Sbjct: 30  PDTFKW-AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWLL 88
Query: 186 GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 245
             +      LP  I  G++LV C  G   SN  T+L    +A LS+ +TS+ST  +  +T
Sbjct: 89  SKL----LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVA-LSVAVTSVSTLISPLLT 143
Query: 246 PLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS---- 301
           P + L+L G+ L +   GM+ SI+++V++PI  GL++++        +   LP +S    
Sbjct: 144 PAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAI 203
Query: 302 VLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQ 361
           VL+    VGA     +ES +  F          + L  F A +  TGL +         Q
Sbjct: 204 VLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKW--TGLPYDA-------Q 254
Query: 362 RTLSYETGV 370
           +TL+ E G+
Sbjct: 255 KTLTIEVGM 263

>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 117/249 (46%), Gaps = 19/249 (7%)
Query: 126 PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 185
           P +F W    Y    LG +MF +G+     DF   FK P  +  G + QF + P   +  
Sbjct: 35  PDTFKW-AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCL 93
Query: 186 GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 245
             +      LP  I  G++LV C  G   SN  T+L    +A LS+ +TS+ST T+  +T
Sbjct: 94  SKL----LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVA-LSVAVTSVSTLTSPLLT 148
Query: 246 PLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS---- 301
           P + L+L G+ L +   GM+ SI+++V++PI  GL++++        +   LP +S    
Sbjct: 149 PAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAI 208
Query: 302 VLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQ 361
           VL+    VGA     +ES +  F          + L  F A +  TGL +         Q
Sbjct: 209 VLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKW--TGLPYDA-------Q 259
Query: 362 RTLSYETGV 370
           + L+ E G+
Sbjct: 260 KALTIEVGM 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	2e-66

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score =  213 bits (543), Expect = 2e-66
 Identities = 71/271 (26%), Positives = 119/271 (43%), Gaps = 11/271 (4%)

Query: 100 LVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIE 159
           L  I                  A   P +F W    Y    LG +MF +G+     DF  
Sbjct: 9   LSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGP-YIPWLLGIIMFGMGLTLKPSDFDI 67

Query: 160 AFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT 219
            FK P  +  G + QF + P   +        +  LP  I  G++LV C  G   SN  T
Sbjct: 68  LFKHPKVVIIGVIAQFAIMPATAWCL----SKLLNLPAEIAVGVILVGCCPGGTASNVMT 123

Query: 220 FLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAG 279
           +L    +A LS+ +TS+ST T+  +TP + L+L G+ L +   GM+ SI+++V++PI  G
Sbjct: 124 YLARGNVA-LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLG 182

Query: 280 LLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA 339
           L++++        +   LP +SV      +GA +  +   +M   GL I  +++  +   
Sbjct: 183 LIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIME-SGLLIFAVVVLHNGIG 241

Query: 340 FVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370
           ++ G+                Q+ L+ E G+
Sbjct: 242 YLLGFFAAKWTGLPYDA----QKALTIEVGM 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=7.1e-44  Score=352.01  Aligned_cols=274  Identities=25%  Similarity=0.449  Sum_probs=253.0

Q ss_pred             chH-HHHHHHhhhHHHHHHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 016764           98 FSL-VNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFV  176 (383)
Q Consensus        98 ~~~-~~~l~~l~~~l~~~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fv  176 (383)
                      |+. .++.++++++++++++.++++|+.+|+.+.+++ ++++++++++||.+|++++++|+++.++|||.+..++++||+
T Consensus         6 m~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~-~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v   84 (332)
T 3zux_A            6 MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG-PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA   84 (332)
T ss_dssp             -CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGG-GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence            553 456789999999999999999999999999886 788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 016764          177 VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKR  256 (383)
Q Consensus       177 l~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~  256 (383)
                      ++|+++|++++    .++++++++.|+++++|+||+.+|++||+++|||. ++++.++.++|+++++++|+++.++.|++
T Consensus        85 i~Pll~~~l~~----~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~g~~  159 (332)
T 3zux_A           85 IMPATAWCLSK----LLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLAGEM  159 (332)
T ss_dssp             HHHHHHHHHHH----HTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHH----HhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999998    56899999999999999999999999999999999 89999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHH
Q 016764          257 LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFH  336 (383)
Q Consensus       257 v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~  336 (383)
                      +++|+.+++.+++.++++|+++|+++|++.|++.+++++.+++++...+++++..+++.+.+.+.+. ++.++..+++++
T Consensus       160 ~~v~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~  238 (332)
T 3zux_A          160 LEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHN  238 (332)
T ss_dssp             GHHHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988888888888877664 446777888999


Q ss_pred             HHHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764          337 LSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS  382 (383)
Q Consensus       337 ~~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s  382 (383)
                      .++|.+||+++|.+ +.++   ++++|+++|+|+||+++|+++|.+
T Consensus       239 ~~~~~lg~~~~r~~-~~~~---~~~~ti~~e~G~qNs~lai~lA~~  280 (332)
T 3zux_A          239 GIGYLLGFFAAKWT-GLPY---DAQKALTIEVGMQNSGLAAALAAA  280 (332)
T ss_dssp             HHHHHHHHHHHHHT-TCCH---HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCH---hHhhhhhhhhhhccHHHHHHHHHH
Confidence            99999999999875 5554   799999999999999999998853

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00