Citrus Sinensis ID: 016770
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 383 | ||||||
| 225444824 | 408 | PREDICTED: uncharacterized membrane prot | 0.986 | 0.926 | 0.791 | 0.0 | |
| 224141655 | 384 | predicted protein [Populus trichocarpa] | 0.981 | 0.979 | 0.824 | 0.0 | |
| 255546053 | 391 | conserved hypothetical protein [Ricinus | 0.971 | 0.951 | 0.830 | 0.0 | |
| 297801074 | 379 | hypothetical protein ARALYDRAFT_915673 [ | 0.958 | 0.968 | 0.827 | 0.0 | |
| 15238520 | 381 | uncharacterized protein [Arabidopsis tha | 0.939 | 0.944 | 0.842 | 1e-180 | |
| 449452540 | 389 | PREDICTED: uncharacterized membrane prot | 0.979 | 0.964 | 0.784 | 1e-179 | |
| 356565856 | 363 | PREDICTED: uncharacterized membrane prot | 0.929 | 0.980 | 0.826 | 1e-177 | |
| 363806932 | 363 | uncharacterized protein LOC100791853 [Gl | 0.919 | 0.969 | 0.835 | 1e-176 | |
| 224087959 | 377 | predicted protein [Populus trichocarpa] | 0.960 | 0.976 | 0.781 | 1e-173 | |
| 147766972 | 368 | hypothetical protein VITISV_009914 [Viti | 0.882 | 0.918 | 0.711 | 1e-160 |
| >gi|225444824|ref|XP_002280579.1| PREDICTED: uncharacterized membrane protein C776.05-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/402 (79%), Positives = 346/402 (86%), Gaps = 24/402 (5%)
Query: 3 SDETVEETNGDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHE 62
++E VEE NGDSF VKQR +DRS+KV QTK ++SK+AVQTKE+LSKQAVKIAKQAEEHE
Sbjct: 4 NEEAVEEANGDSFLAVKQRLRDRSKKVAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHE 63
Query: 63 RFINKVTHLLGVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIYYRFKKWHYYLLDF 122
RFINKVTHLLGVLGFG FCFLLGARP DI YVYCLFY FVPLRWIYYRFKKWHYYLLDF
Sbjct: 64 RFINKVTHLLGVLGFGAFCFLLGARPQDIPYVYCLFYFTFVPLRWIYYRFKKWHYYLLDF 123
Query: 123 CYYANTIFLVDLLMYPKNEKLFMVCFSFAEGPLAWALIVWRCSLVFNSVDKIVSVLIHLL 182
CYYANTIFLV LL+YPKNEKLFMVCFSFAEGPLAWALIVWRCSLVF+SVDKIVSVLIHLL
Sbjct: 124 CYYANTIFLVVLLLYPKNEKLFMVCFSFAEGPLAWALIVWRCSLVFSSVDKIVSVLIHLL 183
Query: 183 PGLVFFTIRWWNPESFAAMHPEGSSRRASWPYVEDKSYLLTWLFLVPLGAYTLWQVLYFL 242
PG+VFFTIRWWNP +F AMHPEG++ RASWPYVE+KSYL TWLF+VPL AYTLWQVLYFL
Sbjct: 184 PGIVFFTIRWWNPTTFEAMHPEGTAHRASWPYVENKSYLWTWLFVVPLAAYTLWQVLYFL 243
Query: 243 IVNVLRRQRLVRDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNRMFMYIAFQAIFTVA 302
IVNVLRRQRL+RDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNR+ MYI FQ +FTVA
Sbjct: 244 IVNVLRRQRLLRDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNRLLMYILFQGVFTVA 303
Query: 303 TMALTVPIFLSYKLHVIFQILKISAAIWNGGSFLLEVMPKQVILKEKKKAEIQPA----- 357
T ALTVPIFLSY++HV+FQILK+SA +WNGGSFLLEVMP+QVILKEKKK+E QP
Sbjct: 304 TTALTVPIFLSYEMHVVFQILKVSATVWNGGSFLLEVMPRQVILKEKKKSETQPVQTLLV 363
Query: 358 ------QPQRP------------QDQSLVLMENSIETNRSTE 381
QP +P QDQS L+E S E N S E
Sbjct: 364 PSAETNQPDQPPLVDYLKENGSQQDQS-SLVETSEEMNSSAE 404
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141655|ref|XP_002324182.1| predicted protein [Populus trichocarpa] gi|118486934|gb|ABK95300.1| unknown [Populus trichocarpa] gi|222865616|gb|EEF02747.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255546053|ref|XP_002514086.1| conserved hypothetical protein [Ricinus communis] gi|223546542|gb|EEF48040.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|297801074|ref|XP_002868421.1| hypothetical protein ARALYDRAFT_915673 [Arabidopsis lyrata subsp. lyrata] gi|297314257|gb|EFH44680.1| hypothetical protein ARALYDRAFT_915673 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15238520|ref|NP_198396.1| uncharacterized protein [Arabidopsis thaliana] gi|9758147|dbj|BAB08704.1| unnamed protein product [Arabidopsis thaliana] gi|14335068|gb|AAK59798.1| AT5g35460/MOK9_4 [Arabidopsis thaliana] gi|27764924|gb|AAO23583.1| At5g35460/MOK9_4 [Arabidopsis thaliana] gi|332006586|gb|AED93969.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|449452540|ref|XP_004144017.1| PREDICTED: uncharacterized membrane protein C776.05-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356565856|ref|XP_003551152.1| PREDICTED: uncharacterized membrane protein C776.05-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|363806932|ref|NP_001242051.1| uncharacterized protein LOC100791853 [Glycine max] gi|255644678|gb|ACU22841.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224087959|ref|XP_002308273.1| predicted protein [Populus trichocarpa] gi|222854249|gb|EEE91796.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|147766972|emb|CAN67685.1| hypothetical protein VITISV_009914 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 383 | ||||||
| TAIR|locus:2169533 | 381 | AT5G35460 "AT5G35460" [Arabido | 0.937 | 0.942 | 0.806 | 8.9e-157 | |
| DICTYBASE|DDB_G0288315 | 581 | DDB_G0288315 "transmembrane pr | 0.788 | 0.519 | 0.3 | 2.9e-34 | |
| POMBASE|SPBC776.05 | 403 | SPBC776.05 "membrane transport | 0.853 | 0.811 | 0.264 | 8.8e-31 | |
| CGD|CAL0003815 | 410 | orf19.988 [Candida albicans (t | 0.853 | 0.797 | 0.254 | 4.5e-27 | |
| UNIPROTKB|Q59NC2 | 410 | CaO19.988 "Potential membrane | 0.853 | 0.797 | 0.254 | 4.5e-27 | |
| SGD|S000003381 | 432 | YGR149W "Putative protein of u | 0.707 | 0.627 | 0.282 | 1.2e-26 | |
| UNIPROTKB|G4MMY7 | 547 | MGG_06893 "Uncharacterized pro | 0.665 | 0.466 | 0.292 | 6.1e-24 | |
| ASPGD|ASPL0000037961 | 506 | AN2940 [Emericella nidulans (t | 0.624 | 0.472 | 0.308 | 7.4e-20 |
| TAIR|locus:2169533 AT5G35460 "AT5G35460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
Identities = 292/362 (80%), Positives = 319/362 (88%)
Query: 1 MLSDETVEETNG-DSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAE 59
M ++E +NG DSF VKQRFKDRS+KVVQT+ ++SK+AVQT+E+LSKQAVKIAKQAE
Sbjct: 1 MANNED-SNSNGLDSFDAVKQRFKDRSKKVVQTRELLSKQAVQTREILSKQAVKIAKQAE 59
Query: 60 EHERFINKVTHXXXXXXXXXXXXXXXARPHDIHYVYCLFYIIFVPLRWIYYRFKKWHYYL 119
EHERFINKVTH ARP DI VYC FY+IFVPLRWIYYRFKKWHYYL
Sbjct: 60 EHERFINKVTHLVGVLGFGGFCFLLGARPQDIPLVYCFFYVIFVPLRWIYYRFKKWHYYL 119
Query: 120 LDFCYYANTIFLVDLLMYPKNEKLFMVCFSFAEGPLAWALIVWRCSLVFNSVDKIVSVLI 179
LDFCYYANTIFLVDLL+YPKNEKLFMVCFSFAEGPLAWA+IVWRCSLVF+S DKIVSVLI
Sbjct: 120 LDFCYYANTIFLVDLLLYPKNEKLFMVCFSFAEGPLAWAIIVWRCSLVFSSPDKIVSVLI 179
Query: 180 HLLPGLVFFTIRWWNPESFAAMHPEGSSRRASWPYVEDKSYLLTWLFLVPLGAYTLWQVL 239
HLLPGLVFFTIRWWNP +FAAMHP G+ RR SWPYVEDK+YL TWLFLVPL YTLWQVL
Sbjct: 180 HLLPGLVFFTIRWWNPATFAAMHPVGTDRRVSWPYVEDKAYLFTWLFLVPLVVYTLWQVL 239
Query: 240 YFLIVNVLRRQRLVRDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNRMFMYIAFQAIF 299
YFLIVNVLRRQRL+RDPEVMTSYRELSKKA+KANN W+LSGLLGDQNR++MYI FQAIF
Sbjct: 240 YFLIVNVLRRQRLLRDPEVMTSYRELSKKAEKANNKLWQLSGLLGDQNRIWMYILFQAIF 299
Query: 300 TVATMALTVPIFLSYKLHVIFQILKISAAIWNGGSFLLEVMPKQVILKEKKK-AEIQPAQ 358
TVATMALTVPIFLSY+LHVIFQILKISAA+WNGGSFLLEVMP+QVI KEKKK AE+QP +
Sbjct: 300 TVATMALTVPIFLSYRLHVIFQILKISAAVWNGGSFLLEVMPRQVIQKEKKKKAEMQPIE 359
Query: 359 PQ 360
Q
Sbjct: 360 EQ 361
|
|
| DICTYBASE|DDB_G0288315 DDB_G0288315 "transmembrane protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPBC776.05 SPBC776.05 "membrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0003815 orf19.988 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q59NC2 CaO19.988 "Potential membrane protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| SGD|S000003381 YGR149W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4MMY7 MGG_06893 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000037961 AN2940 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| scaffold_703415.1 | annotation not avaliable (379 aa) | ||||||||||
(Arabidopsis lyrata) | |||||||||||
| fgenesh2_kg.7__3043__AT5G35430.1 | • | 0.471 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 383 | |||
| pfam10998 | 111 | pfam10998, DUF2838, Protein of unknown function (D | 4e-40 |
| >gnl|CDD|204577 pfam10998, DUF2838, Protein of unknown function (DUF2838) | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 4e-40
Identities = 47/110 (42%), Positives = 70/110 (63%)
Query: 67 KVTHLLGVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIYYRFKKWHYYLLDFCYYA 126
K++ + GVL FL+G P HY Y + Y F+P+R+ YR K +HY+L D CY+
Sbjct: 2 KISFIFGVLNLLLTGFLIGKYPELFHYWYTVLYFYFMPIRFYTYRKKGYHYFLADLCYFV 61
Query: 127 NTIFLVDLLMYPKNEKLFMVCFSFAEGPLAWALIVWRCSLVFNSVDKIVS 176
N + L+ + ++P + +LF+ CF A G LA A+I WR SLVF+S+DK+ S
Sbjct: 62 NFLLLLFIWVFPSSARLFLSCFRLANGTLALAVITWRNSLVFHSIDKVTS 111
|
This bacterial family of proteins has no known function. Length = 111 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 383 | |||
| KOG2895 | 408 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF10998 | 111 | DUF2838: Protein of unknown function (DUF2838); In | 100.0 | |
| TIGR00383 | 318 | corA magnesium Mg(2+) and cobalt Co(2+) transport | 83.5 | |
| COG0598 | 322 | CorA Mg2+ and Co2+ transporters [Inorganic ion tra | 82.41 |
| >KOG2895 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-112 Score=818.87 Aligned_cols=365 Identities=65% Similarity=1.102 Sum_probs=331.4
Q ss_pred CCccccccccCCchHHHHHHHhh-------------hhHHHHhhHHHHHHHH----------------HHHHHHHHHHHH
Q 016770 2 LSDETVEETNGDSFGKVKQRFKD-------------RSQKVVQTKAIMSKKA----------------VQTKEMLSKQAV 52 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 52 (383)
+.||+-++++.|+++..++|++| |+||+.|++|-++||+ .++++++++|.+
T Consensus 9 IddEdnns~gLds~~~f~d~f~~kvvskyYhgsHls~~~kk~q~~eg~srqkdshhPhHlnrsrsflql~~r~~~s~q~~ 88 (408)
T KOG2895|consen 9 IDDEDNNSNGLDSFDAFKDRFKDKVVSKYYHGSHLSRSKKKVQTREGLSRQKDSHHPHHLNRSRSFLQLQTREILSKQAV 88 (408)
T ss_pred ccccccCcccchhHHHHhhhhcccchheeecchhhhHHHHHHhhHHhhhhcccccCchhhhcchhhhhHHHHHhHHHHHH
Confidence 46899999999999999999999 9999999999999999 778899999999
Q ss_pred HHHHHHhhhhhhh-hhHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHhhhhhhhhhhheecccchhhhchhHHHHHHHH
Q 016770 53 KIAKQAEEHERFI-NKVTHLLGVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIYYRFKKWHYYLLDFCYYANTIFL 131 (383)
Q Consensus 53 ~i~~~~~~~~r~~-dKvsF~~GVl~i~~s~fl~G~~Pe~~~~~Yti~~~~lmPiR~y~Y~k~~~HYFLlDfCYfvN~l~l 131 (383)
+++|++++++|++ ||++|.+||+|++.+||++|++||++|+|||++++++||+|||||+++||||||+|||||+|+|++
T Consensus 89 ~~~~~~~~~~rF~neK~~~~~gv~~~~~~~fL~G~~Pe~~hl~Yti~~fV~~PlR~ytY~~kk~hYflaDFCY~~N~l~L 168 (408)
T KOG2895|consen 89 KIAKQAEEHERFINEKVTHLVGVLGFGGFCFLLGARPEDIHLVYTIFYFVFVPLRWYTYRFKKWHYFLADFCYYANTLFL 168 (408)
T ss_pred HhhcccccceeeeccchhhhhHHHHHHHHHHHhccCcccceeeeeeeeheeeeeeEEEEEeccceeehhHHHHHHhHHHH
Confidence 9999999999999 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCChhhHHHHHHhccCchhHHHHhhhcceeeccccchhhhhhhhhhhhhhhhhhccCcchhhccCCCCCcccCC
Q 016770 132 VDLLMYPKNEKLFMVCFSFAEGPLAWALIVWRCSLVFNSVDKIVSVLIHLLPGLVFFTIRWWNPESFAAMHPEGSSRRAS 211 (383)
Q Consensus 132 ~~iw~~P~s~~LF~~~F~la~GPLa~AIi~WRNSLVFHSiDK~TSlFIHi~Pplv~~~iRw~~~~~~~~~~p~~~~~~~s 211 (383)
++||+||.|.+||++||++|.||||||||+|||||||||+||+||||||++||+|+|+|||+.|.++..- ..
T Consensus 169 v~iwifP~s~~LF~~cfsf~~GtLawaVi~WRnSLvfhSiDKitS~fIH~~PplV~~tI~h~~p~~y~~d--------Rf 240 (408)
T KOG2895|consen 169 VDIWIFPKSEKLFMVCFSFAEGTLAWAVIVWRNSLVFHSIDKITSVFIHLLPPLVFFTIRHWNPATYATD--------RF 240 (408)
T ss_pred HHhhhcccchhHhhhhhhhccccceeeeeeeecceeEeccchhheeeeeccCceeEEEEeecCchhhhhh--------cC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988622 23
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhheeecceeccCCCcchhHHHHHhhhccccchhhhhhccCCCchhHHH
Q 016770 212 WPYVEDKSYLLTWLFLVPLGAYTLWQVLYFLIVNVLRRQRLVRDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNRMFM 291 (383)
Q Consensus 212 ~p~~~~~~~~~~~~~~~P~~~Y~iWQ~lY~~~i~v~rr~ki~~~~~~~TSf~~L~~~~~k~~~~~~~l~~~~~~~~~~~~ 291 (383)
||.++++.+..+|.+++|+++|++||++|++||+|.|. +.+++||||||||||++.. ++++..+++++.+|++.+.+|
T Consensus 241 p~~v~~k~~d~~~~~l~~s~~Y~lWQvlY~~fI~v~kq-~~i~~germTSf~~Lska~-~~n~kl~~l~~~lp~~~~~~~ 318 (408)
T KOG2895|consen 241 PPYVEDKAYDFTWLFLVPSVVYTLWQVLYFLFINVLKQ-RLIRDGERMTSFRELSKAE-KANNKLWQLSGLLPDQNRIWM 318 (408)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HhccCCcccchHHHHHHHH-hhcchHHhhcccCccccchhH
Confidence 45566777889999999999999999999999999874 5558889999999999654 445666799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCceeeEEechhhhHHHHHhh--hhcCCCCCCCCc-ccccc
Q 016770 292 YIAFQAIFTVATMALTVPIFLSYKLHVIFQILKISAAIWNGGSFLLEVMPKQVILKEKKK--AEIQPAQPQRPQ-DQSLV 368 (383)
Q Consensus 292 fm~~Q~~ytv~Tmll~~p~~~sy~~h~~fl~~if~~svwNGAtyYidvFgkry~~ke~~k--~~~~~~~~~~~~-~~~~~ 368 (383)
||++|++||+.||+||.|++.++.+|++|++++|+||+||||+|||||||||. ++|+++ .|+|+.+++--. +..|.
T Consensus 319 y~l~Qy~y~v~TMllc~~w~~~kl~~~~Fl~l~f~wavwNGasyyidv~grr~-~~e~e~l~q~lqp~~~~~~s~~avs~ 397 (408)
T KOG2895|consen 319 YILFQYIYTVATMLLCVPWFLSKLLHVIFLILKFSWAVWNGASYYIDVMGRRV-IQEEEKLKQELQPIEEQILSHEAVSH 397 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeehhhhhHHH-HHHHHHHHHhcCCChhhhcchhhcCC
Confidence 99999999999999999999999999999999999999999999999999998 555544 566655443222 44566
Q ss_pred ccccccccc
Q 016770 369 LMENSIETN 377 (383)
Q Consensus 369 ~~~~~~~~~ 377 (383)
+.||+++..
T Consensus 398 ~~~~~~~~~ 406 (408)
T KOG2895|consen 398 PTENEPKST 406 (408)
T ss_pred CcccCcCCC
Confidence 777777644
|
|
| >PF10998 DUF2838: Protein of unknown function (DUF2838); InterPro: IPR021261 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
| >TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) | Back alignment and domain information |
|---|
| >COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 383 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 9e-08
Identities = 41/315 (13%), Positives = 88/315 (27%), Gaps = 78/315 (24%)
Query: 4 DETVEETNGDSFGKVKQRFKDRSQKVV---QTKAIMSKKAVQTKEMLSKQAVKIAKQAEE 60
+ V T+ S D + + K+++ K + L ++ +
Sbjct: 274 FKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT------ 325
Query: 61 HERFINKVTHLLGVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIYYRFKKWHYYLL 120
+ L ++ D W ++ +
Sbjct: 326 ---------NPR-RLS------IIAESIRDG------------LATWDNWK-----HVNC 352
Query: 121 DFCYYANTIFL-VDLLMYPKNEKLFMVCFSFAEG---PLAWALIVWRCSLVFNSVDKIVS 176
D I +++L + K+F F P ++W ++ + V +V+
Sbjct: 353 D--KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW-FDVIKSDVMVVVN 409
Query: 177 VLIHLLPGLVFFTIRWWNPESF----------------AAMHPEGSSRRASWPYVEDKSY 220
L LV + + A+H R Y K++
Sbjct: 410 KLHKY--SLVE---KQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKTF 459
Query: 221 LLTWLFLVPLGAYTLWQVLYFLIVNVLRRQRLVRDPEVMTSYRELSKKAQKANNIWWRLS 280
L L Y + + L N+ +R+ V +R L +K + + W
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLK-NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 281 GLLGDQNRMFMYIAF 295
+L ++ Y +
Sbjct: 519 SILNTLQQLKFYKPY 533
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 383 | |||
| 3hd7_A | 91 | Vesicle-associated membrane protein 2; membrane pr | 81.34 |
| >3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A | Back alignment and structure |
|---|
Probab=81.34 E-value=13 Score=29.67 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=42.5
Q ss_pred chHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--h--hhHHHHHHHHHHHHHHH
Q 016770 14 SFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERF--I--NKVTHLLGVLGFGGFCF 82 (383)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~--~--dKvsF~~GVl~i~~s~f 82 (383)
+++.+|.-|.+-.+|+.+..|+|+..-+++. .|+.+.....+++++..|- . =|...++|+..+++...
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~-~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i 84 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRAD-ALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667777777777777776666555 3455666666666665442 1 26666666666554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00