Citrus Sinensis ID: 016775

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
MEDSFKLSPGSSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFFDLMGDDLLNLGSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRDLVRFNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLAFPNNTDLREHDRCVADGKLMWDWDPSYPAAQFQNHSNQPFSSHTPTTEESNNTPIIGPPSDYRPHEFETWESTKVVQGMHHSILHGSETANEAITQFDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASEISDVEI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEcccccccccHHHHHHHHccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHcccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccHHHccccEEEEEcccHHHHHHHccHHHHHHHHHHHHccccHHHHHHccccEEEEEcHcHHHHHHHccHHHccccccHHccccEEEccccccccHHHHHHHHcccccccccccccccccccccccccHcccccccccccccccccccHHHcccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHHccccHEEEEHHHHHHHHccccccccEEEEccccccccc
Coil and Loop (DISEMBL)
medsfklspgssmlaLCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICdncraepvsvrcctenlmlcqdcdwdshynssvssvherssvegfsgcpsvTELASFFDLMgddllnlgsgfgvyepkmlnfeelavptqncsvfmsgnkYKKEVYEQLVEIGKRDLvrfngngaelgpgtttsicdqygytqslevenideekllnpktaftsllafpnntdlrehdrcvadgklmwdwdpsypaaqfqnhsnqpfsshtptteesnntpiigppsdyrphefetwestKVVQGMHHSILHGSETANEAITQFDKELLAKNRGNAMLRYKEKkknrsygkqIRYESRKARADTRKrvkgrfvkaseisdvei
Flexible Loop (DISEMBL)
medsfklspgssMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFFDLMGDDLLNLGSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRDLVRFNGNGaelgpgtttsICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLafpnntdlrEHDRCVADGKLMWDWDPSYPAAQFQNHSNQPFSShtptteesnntpIIGPPSDYRPHEFETWESTKVVQGMHHSILHGSETANEAITQFDKELLAKNRGNamlrykekkknrsygkqiryesrkaradtrkrvkgrfvkaseisdvei
Low Complexity Region (SEG)
MEDSFKLSPGSSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNssvssvherssveGFSGCPSVTELASFFDLMGDDLLNLGSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRDLVRFNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLAFPNNTDLREHDRCVADGKLMWDWDPSYPAAQFQNHSNQPFSSHTPTTEESNNTPIIGPPSDYRPHEFETWESTKVVQGMHHSILHGSETANEAITQFDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASEISDVEI
Disordered region (IsUnstruct)
************MLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSV********VEGFSGCPSVTELASFFDLMGDDLLNLGSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRDLVRFNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLAFPNNTDLREHDRCVADGKLMWDWDPSY******************************************WESTKVVQGMHHSILH********IT*F***********************************************************
Disordered Region (DISOPRED)
**************ALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSS****HERSSVEGFSGCPSVTELASFFDLMGDDLLNLGSGFGVYEPKMLNFEELAVPTQNCS*******YKKEVYEQLVEIGKRDLVRFNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEK******************************************************************PIIGPPSDYRPHEFETWESTKVVQ*******************************************SYGKQIRYESRKARADTRKRVKGRFVKAS*******
Disordered Region (DISEMBL)
**********SSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHY****************SGCPSVTELASFFDLMGDDLLNLGSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRDLVRFNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLAFPNNTDLREHDRCVADGKLMWDWDPSYPAAQFQNHSN**************NTPIIGPPSDYRPHEFETWESTKVVQGMHHSILHGSETANEAITQFDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYE**********RVKGRFVKASEISDVEI
Disordered Region (DISPRO)
*************LALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFFDLMGD***************************************KEVYEQLVEIGKRDLVRFNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTS*****NN**********ADGKLMWDWD***********************************************************************************NAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASEI*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDSFKLSPGSSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFFDLMGDDLLNLGSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRDLVRFNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLAFPNNTDLREHDRCVADGKLMWDWDPSYPAAQFQNHSNQPFSSHTPTTEESNNTPIIGPPSDYRPHEFETWESTKVVQGMHHSILHGSETANEAITQFDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASEISDVEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
O22800	402	Zinc finger protein CONST	yes	no	0.895	0.853	0.391	3e-60
O82256	332	Zinc finger protein CONST	no	no	0.778	0.897	0.330	6e-42
Q9C7E8	433	Zinc finger protein CONST	no	no	0.420	0.371	0.478	2e-38
Q9LUA9	373	Zinc finger protein CONST	no	no	0.305	0.313	0.471	3e-27
Q9SSE5	372	Zinc finger protein CONST	no	no	0.295	0.303	0.436	1e-24
Q9C9F4	356	Putative zinc finger prot	no	no	0.485	0.522	0.312	5e-22
O23379	330	Putative zinc finger prot	no	no	0.271	0.315	0.433	3e-20
Q9LJ44	364	Zinc finger protein CONST	no	no	0.261	0.274	0.450	1e-19
Q940T9	362	Zinc finger protein CONST	no	no	0.234	0.248	0.433	2e-15
Q9SK53	294	Zinc finger protein CONST	no	no	0.287	0.374	0.385	2e-14

>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2

 Score =  233 bits (593), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 162/414 (39%), Positives = 215/414 (51%), Gaps = 71/414 (17%)

Query: 14  LALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCC 73
           +  C+FC  + AVL+C AD+AKLCL CDQ +HSAN LS +H+RSQICDNC  EPVSVRC 
Sbjct: 9   VVACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCF 68

Query: 74  TENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFF--DLMG-------DD 124
           T+NL+LCQ+CDWD H + S S+ HERS+VEGFSGCPSV ELA+ +  DL G       D+
Sbjct: 69  TDNLVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWGIDLKGKKKEDDEDE 128

Query: 125 LL-NLGSGFGVYEPKMLNFEELAVPTQ-NC-SVFMSGNKYKKEVYEQLVEIGKRDLVRFN 181
           L  N G G   +       +EL VP   +C     S  + K+ V+EQL E+ KR  V   
Sbjct: 129 LTKNFGMGLDSWGSGSNIVQELIVPYDVSCKKQSFSFGRSKQVVFEQL-ELLKRGFVE-- 185

Query: 182 GNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLL---NPKTAFTSLLAFP----NNTDL 234
           G G  + P                  E I+    +   +P T+FTSLL       N    
Sbjct: 186 GEGEIMVP------------------EGINGGGSISQPSPTTSFTSLLMSQSLCGNGMQW 227

Query: 235 REHDRCVADGKLMWDW------DPSYPAAQFQNHSNQPFSSHTPTTEESNNTPIIGPPSD 288
              +        +WD+      +P  P+      S   F++ T    ++  T +      
Sbjct: 228 NATNHSTGQNTQIWDFNLGQSRNPDEPSPVETKGSTFTFNNVTHLKNDTRTTNMNAFKES 287

Query: 289 YRPHEF---------ETWESTKVVQGMH-----------HSILHGSETANE-----AITQ 323
           Y+  +          ET +S  +   +H           H   H + T+N      A+T 
Sbjct: 288 YQQEDSVHSTSTKGQETSKSNNIPAAIHSHKSSNDSCGLHCTEHIAITSNRATRLVAVTN 347

Query: 324 FDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377
            D E +A+NR NAM RYKEKKK R Y K IRYE+RKARA+TR RVKGRFVKA++
Sbjct: 348 ADLEQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 401

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score =  171 bits (434), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 182/384 (47%), Gaps = 86/384 (22%)

Query: 16  LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTE 75
           LCD+C+S +A++YC ADSAKLCL CD+Q+H AN L  +H RS +CD+C   P S+ C TE
Sbjct: 12  LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query: 76  NLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFFDLMGDDLLNLGSGFGVY 135
             +LCQ+CDW  H  S  SS+H R   EGF+GCPSV EL +   ++G D L L SG    
Sbjct: 72  RSVLCQNCDWQHHTAS--SSLHSRRPFEGFTGCPSVPELLA---IVGLDDLTLDSGLLWE 126

Query: 136 EPKML--------------NFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRD--LVR 179
            P+++              NF    VP    +   +  KYK E+  QL  + + +   ++
Sbjct: 127 SPEIVSLNDLIVSGGSGTHNFRATDVPPLPKNRHATCGKYKDEMIRQLRGLSRSEPGCLK 186

Query: 180 FNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLAFPNNTDLREHDR 239
           F    AE+  G                       + L P    T                
Sbjct: 187 FETPDAEIDAGF----------------------QFLAPDLFST---------------- 208

Query: 240 CVADGKLMWDWDPSYPAAQFQNHSNQPFSSHTPTTEESNNTPIIGPPSDYRPHEFETWES 299
           C  +  L W +D        Q+H + P+ S      E          SD +P   +   S
Sbjct: 209 CELESGLKW-FDQ-------QDHEDFPYCSLLKNLSE----------SDEKPENVDRESS 250

Query: 300 TKV-VQGM-----HHSILHGSETANEAITQFDKELLAKNRGNAMLRYKEKKKNRSYGKQI 353
             V V G        +++    T+  ++T    E+ +  R +A+ RYKEKKK+R Y K I
Sbjct: 251 VMVPVSGCLNRCEEETVMVPVITSTRSMTH---EINSLERNSALSRYKEKKKSRRYEKHI 307

Query: 354 RYESRKARADTRKRVKGRFVKASE 377
           RYESRK RA++R R++GRF KA++
Sbjct: 308 RYESRKVRAESRTRIRGRFAKAAD 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 112/184 (60%), Gaps = 23/184 (12%)

Query: 11  SSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSV 70
           SS    CDFC  + AVL+C AD+AKLCL CDQQ+H+AN LS +H+RSQICDNC  EPVSV
Sbjct: 3   SSERVPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSV 62

Query: 71  RCCTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFFDL---------- 120
           RC T+NL+LCQ+CDWD H + SVS  H RS+VEGFSGCPS  ELA+ + L          
Sbjct: 63  RCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWGLDLEQGRKDEE 122

Query: 121 -----MGDDLLNLGSGFGVYEPKMLNFEELAVPT-----QNCSVFMSGNKYKKEVYEQLV 170
                M   + N G     +   +L   EL VP+     +  S   S  +YK+ + +QL 
Sbjct: 123 NQVPMMAMMMDNFGMQLDSW---VLGSNELIVPSDTTFKKRGSCGSSCGRYKQVLCKQLE 179

Query: 171 EIGK 174
           E+ K
Sbjct: 180 ELLK 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 4/121 (3%)

Query: 13  MLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRC 72
           M  +CDFC  + +++YC +D+A LCL CD+ +HSANALS RH R+ +C+ C A+P SVRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query: 73  CTENLMLCQDCDWDSH--YNSSVSSVHERSSVEGFSGCPSVTELASFFDLMGDDLLNLGS 130
             E + LCQ+CDW  H   NS+ +S H+R ++  +SGCPS  EL+S +    D  LN+ S
Sbjct: 61  SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMD--LNISS 118

Query: 131 G 131
            
Sbjct: 119 A 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 13/126 (10%)

Query: 13  MLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRC 72
           M  +CDFC  + +++YC +D+A LCL CD+ +HSANALS RH R+ +C+ C A+P +VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query: 73  CTENLMLCQDCDWDSHYNSSVSSV---------HERSSVEGFSGCPSVTELASFF----D 119
             E + LCQ+CDW  H NS+ ++          H+R ++  +SGCPS +ELAS +    D
Sbjct: 61  VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query: 120 LMGDDL 125
           L G  +
Sbjct: 121 LAGQSI 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 35/221 (15%)

Query: 12  SMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVR 71
           +M  +C+FC +  AV+YC AD+A LCL CD ++HSAN+LS RHLR+ +CD+C+ +P  VR
Sbjct: 9   NMERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVR 68

Query: 72  CCTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASF--FDLM-GDDLLNL 128
           C    + LC  C  +  ++   SS H R  +  ++GCP   + A    F +M  DD ++L
Sbjct: 69  CFDHKMFLCHGC--NDKFHGGGSSEHRRRDLRCYTGCPPAKDFAVMWGFRVMDDDDDVSL 126

Query: 129 GSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRDLVRFNGNGAELG 188
              F + +PK+                    +    + EQ++E+ K  L   NG      
Sbjct: 127 EQSFRMVKPKV-------------------QREGGFILEQILELEKVQLREENG------ 161

Query: 189 PGTTTSICDQYGYTQSLEVENIDEEKLLN-PKTAFTSLLAF 228
               +S   + G    LE+    EE+L++ P+T    ++ F
Sbjct: 162 ----SSSLTERGDPSPLELPKKPEEQLIDLPQTGKELVVDF 198

Arabidopsis thaliana (taxid: 3702)

>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=3 SV=2

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 13  MLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRC 72
           M A CDFC ++ A++YC +DSAKLCL CD  +HSAN LS RH RS +C+ C  +P +V C
Sbjct: 1   MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHC 60

Query: 73  CTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFF 118
             EN+ LCQ C W +   + +   H   S+  +S CPS ++    +
Sbjct: 61  MNENVSLCQGCQWTASNCTGLG--HRLQSLNPYSDCPSPSDFGKIW 104

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 13  MLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRC 72
           M   CD C +  A++YC +D AKLCL CD  +HSAN LS RH+RS IC+ C ++P ++RC
Sbjct: 1   MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRC 60

Query: 73  CTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTEL 114
             E +  CQ C W  H ++     H   S+  FSGCPS T+ 
Sbjct: 61  LDEKVSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDF 100

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 50/90 (55%)

Query: 16  LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTE 75
           LCD C S  A LYC  D+A LCL CD ++H+AN L+ RH R  +C+ C   P  V C  +
Sbjct: 5   LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKAD 64

Query: 76  NLMLCQDCDWDSHYNSSVSSVHERSSVEGF 105
              LC  CD D H  + ++  HER  V  F
Sbjct: 65  AAALCVTCDRDIHSANPLARRHERVPVTPF 94

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 16  LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTE 75
           LCD C S  A L+C AD+A LC  CD +IH+AN L+ RH R  +C+ C   P  V C  +
Sbjct: 7   LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66

Query: 76  NLMLCQDCDWDSHYNSSVSSVHERSSVEGF----SGCPSVTELASFFDLMGDDL 125
              LC  CD D H  + +S  HER  +  F        S +   +F D  G D+
Sbjct: 67  AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFVDEDGGDV 120

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
224060315	498	predicted protein [Populus trichocarpa]	0.885	0.680	0.449	6e-80
255543623	426	transcription factor, putative [Ricinus	0.958	0.861	0.428	2e-75
302398749	484	COL domain class transcription factor [M	0.939	0.743	0.382	8e-68
449484698	490	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.937	0.732	0.377	1e-65
449468832	491	PREDICTED: zinc finger protein CONSTANS-	0.937	0.731	0.376	2e-65
224072504	423	predicted protein [Populus trichocarpa]	0.911	0.825	0.410	8e-65
147785055	438	hypothetical protein VITISV_043320 [Viti	0.942	0.824	0.390	8e-62
255543150	477	hypothetical protein RCOM_1437660 [Ricin	0.955	0.767	0.373	8e-61
42571031	401	zinc finger protein CONSTANS-LIKE 14 [Ar	0.895	0.855	0.392	1e-58
30685731	402	zinc finger protein CONSTANS-LIKE 14 [Ar	0.895	0.853	0.391	2e-58

>gi|224060315|ref|XP_002300138.1| predicted protein [Populus trichocarpa] gi|222847396|gb|EEE84943.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 234/425 (55%), Gaps = 86/425 (20%)

Query: 17  CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTEN 76
           C+FCNSK A+LYC ADSAKLCL CDQQIHS+N LSL+H+RSQICDNCRAEP S+ C  +N
Sbjct: 19  CEFCNSKAAILYCRADSAKLCLPCDQQIHSSNTLSLKHVRSQICDNCRAEPASIHCSNDN 78

Query: 77  LMLCQDCDWDSHYNSSVSS-VHERSSVEGFSGCPSVTELASFF--DLMGDDLLNLGSGFG 133
           L LCQDCDWDSH +S   S +H R+ VEGF GCP V ELAS F  D   D  ++   G  
Sbjct: 79  LFLCQDCDWDSHNSSFSVSSLHNRNPVEGFMGCPPVVELASLFGFDFKSDFFVDSDPGSC 138

Query: 134 VYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRDLVRFNGNGAELGPGTTT 193
            +E + +NF++ AV + + SV  S  K ++EVY+QLVE+GKR +VR NG+GAELGP T  
Sbjct: 139 SFEQEAVNFQDFAVSSDDFSVLSSSGKSRQEVYKQLVEMGKRGMVRVNGDGAELGPDTPP 198

Query: 194 SICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLAFPNNTDLREHDRCVAD---------- 243
           S C      +SLE+EN DEE LL+ +T FTSLL  PN+ D  E+D CV+D          
Sbjct: 199 SRCAVQWNLESLELENGDEE-LLHQQTPFTSLLMLPNHVDASEND-CVSDLGFMWDCNYT 256

Query: 244 --GKLMWDW------DPSYPAAQFQNH--------------------------------- 262
             G   WD+      D + P  Q + +                                 
Sbjct: 257 HQGAQAWDFQLGTSLDCTIPGPQEEGYDVKDPGFMVKNYVDFTEDGAFATQKVLDDGHVT 316

Query: 263 ----------------SNQPFSSHTPTTEESNNTPIIGPPSDYRPHEFETWESTKVVQGM 306
                           SNQ  S + P TE  NNTP++G      P E         +Q M
Sbjct: 317 SCCSSTCEDNLSKNSCSNQQLSRYKPPTENCNNTPLLGLSPGSMPGE-----PNAHIQVM 371

Query: 307 HHSILHGSETANEAITQFDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRK 366
               L   ET NE   + D  L A+NRGNAMLRY          K+IRYESRKARADTRK
Sbjct: 372 EQPSLTWFETLNEVRQKGDAGLFAQNRGNAMLRYD---------KRIRYESRKARADTRK 422

Query: 367 RVKGR 371
           RVKGR
Sbjct: 423 RVKGR 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543623|ref|XP_002512874.1| transcription factor, putative [Ricinus communis] gi|223547885|gb|EEF49377.1| transcription factor, putative [Ricinus communis]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 186/434 (42%), Positives = 244/434 (56%), Gaps = 67/434 (15%)

Query: 1   MEDSFKLSPGSSMLA-LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQI 59
           ME+    +P +S+   LCDFCNS+ A+LYC ADSAKLCLFCDQQ+HSANALSL H RS  
Sbjct: 1   MEEYSDSAPRNSLFVRLCDFCNSEAAILYCRADSAKLCLFCDQQVHSANALSLNHFRSLN 60

Query: 60  CDNCRAEPVSVRCCT------ENLMLCQDCDWDSHYNSSVS-SVHERSSVEGFSGCPSVT 112
           CD C AEP SV+C         +L+LCQDCD+D     SVS S+ +R+ + GF GCP+  
Sbjct: 61  CDKCGAEPASVQCSVINDNNNNDLVLCQDCDFDC----SVSLSLLKRAHINGFMGCPNAV 116

Query: 113 ELASF--FDLMGDDLL-NLGSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQL 169
           EL     FDL    L  +  SG  +Y+ +M N ++L VP+ N     S    ++E+Y+QL
Sbjct: 117 ELGEILGFDLKKTKLFASSDSGSDLYDQEMDNMQDLLVPSGN-----SSRNCRQEMYKQL 171

Query: 170 VEIGKRDLVRFNGNG--AELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLA 227
           +E+GKR+ V+ NG+G   EL P T  S C Q G   +L+++N +EE+  + +  F S+L 
Sbjct: 172 LELGKRERVKVNGDGDGEELRPETPPSRCGQQGNLVNLQMKNGNEEEFHHQERPFASMLM 231

Query: 228 FPNNTDLREHDRCVADGKLMWDWDPSYPAAQ----------------------------- 258
            PN  D+RE D   ADG L+WD +P+Y AAQ                             
Sbjct: 232 LPNLEDVRESDG-AADGVLLWDCNPTYQAAQVWDLDLGKTRDCAEPGEEEANYDATDPGF 290

Query: 259 -FQNH--------------SNQPFSSHTPTTEESNNTPIIGPPSDYRPHEFETWESTKVV 303
            F NH              S Q     T  T    +T ++   SD    E ++  S + V
Sbjct: 291 TFNNHRISKDSAFNIIKVCSKQQVLQSTMETGGGKDTLLVEQSSDSLLAEAKSNNSPRHV 350

Query: 304 QGMHHSILHGSETANEAITQFDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARAD 363
           + +  S L    T +   ++ D EL A+NRGNAMLRY EKKK R Y K IRYESRKARAD
Sbjct: 351 EVVEKSHLAWVGTDDMETSKADVELFAQNRGNAMLRYMEKKKTRRYDKHIRYESRKARAD 410

Query: 364 TRKRVKGRFVKASE 377
           TR+RVKGRFVKASE
Sbjct: 411 TRERVKGRFVKASE 424

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398749|gb|ADL36669.1| COL domain class transcription factor [Malus x domestica]

 Score =  263 bits (673), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 178/465 (38%), Positives = 234/465 (50%), Gaps = 105/465 (22%)

Query: 17  CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTEN 76
           CDFC+ + AVLYC ADSAKLCLFCDQ +HSAN LS +H+RSQICDNC +E VSVRC T+N
Sbjct: 14  CDFCSDQPAVLYCRADSAKLCLFCDQHVHSANLLSRKHVRSQICDNCSSEAVSVRCSTDN 73

Query: 77  LMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFFDLMGDD----------LL 126
           L+LCQ+CDWD+H + SV++ H+R+ +EGFSGCPS  ELAS   L   D          L 
Sbjct: 74  LVLCQECDWDAHGSCSVTAAHDRTPLEGFSGCPSALELASLLGLDLQDKNLPARPDPQLQ 133

Query: 127 NLGSGFGVYEPKMLNF--EELAVPTQNCSVFMSGN-----------KYKKEVYEQLVEIG 173
           N   G    +P    F  ++L VP QN  V ++G+           K K+ + +QL+E+ 
Sbjct: 134 NWDMGLPSVDPSWNGFGMQDLMVPIQNGVVDLTGDMKRQNSGGISGKQKQGIQKQLLELL 193

Query: 174 KRDLVRFNGNGA----ELGPGTTT---------------------SICDQYGYTQSLEVE 208
           KRDL    G G      L PGT T                      + ++ G    +   
Sbjct: 194 KRDLGGGRGGGGSGSENLVPGTQTRNGWQEENGKGNGDVEGLASIDVRNENGGVGGVAAR 253

Query: 209 NIDEEKLLNPKTAFTSLLAFP-----------------------NNTDLREHDRC----- 240
               E +L  +T F+++L  P                       N   LR+H+       
Sbjct: 254 AASLETVLQQQTPFSTMLMMPEENRDGDMLWDSNPHGQTQIWDFNLGRLRDHEESGPLKV 313

Query: 241 ----------------------VADGKLMWD-WDPSYPAA----QFQNHSNQPFSSHTPT 273
                                 + D K++ D +  + P      +F   SN P  S  P 
Sbjct: 314 TYGSNVSGFMIKDFSELMKESSLTDTKMLRDIYQMNSPVGHDDIKFNITSNNPEGSLGPA 373

Query: 274 TEESNNTPIIGPPSDYRPHEFETWESTKVVQGMHHS-ILHGSETANEAI-TQFDKELLAK 331
           T ESNN PI  P S     + +   ++  +  M  S ++ G   +   + T+ D ELLA+
Sbjct: 374 TSESNNVPIGQPLSGSVFGDDKGSGASNDISFMEQSFLMRGDSISMRTVGTKADMELLAQ 433

Query: 332 NRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKAS 376
           NRGNAMLRYKEKKK R Y K IRYESRKARADTRKRVKGRFVKA+
Sbjct: 434 NRGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 478

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484698|ref|XP_004156955.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 14-like [Cucumis sativus]

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 179/474 (37%), Positives = 238/474 (50%), Gaps = 115/474 (24%)

Query: 17  CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTEN 76
           CDFCN ++A+LYC ADSAKLCLFCD+ +HSAN LS +H+RSQICDNCR+EPVS+RC T+N
Sbjct: 14  CDFCNDQVAILYCRADSAKLCLFCDKHVHSANLLSRKHVRSQICDNCRSEPVSIRCSTDN 73

Query: 77  LMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASF--FDLMGDDLL-------- 126
           L+LCQ+CDWD+H + SVS+ H+R+ +EGF+GCPS  EL S   FDL GD  L        
Sbjct: 74  LVLCQECDWDAHGSCSVSAAHDRTPIEGFTGCPSALELVSLWGFDL-GDKKLEESEMLVQ 132

Query: 127 NLGSGFGVYEP--------KMLNFEELAVPTQNCSVFMSGN----------------KYK 162
           N      +  P            F +L VP  N  +F + N                K+K
Sbjct: 133 NWVCSQDLVMPIDSWASRASATAFNDLIVPNDNPFLFANLNCTDAASMFKKQSPSCGKHK 192

Query: 163 KEVYEQLVEIGKRDL----------VRFNGNGAE------LGPGTTTSICDQYGYTQSLE 206
           + +Y+QLVE+ KRD            R    G E      + P TT   C   G  +  +
Sbjct: 193 QVIYKQLVELLKRDFEGGDDVEGDDTRDGDAGGEDVGLQSMVPETTNGDCYWQGDLEGRQ 252

Query: 207 VENIDE--------EKLLNPKTAFTSLLAFPNNTDLREHDRCVADGKLMWDWDPSYPAAQ 258
           +   D+          LL  + +FTSLL  P++  L++++R V D   +WD  P+  + Q
Sbjct: 253 ISKEDDGVFVGAAPPPLLQQQASFTSLLTMPSHVGLKDNERSV-DETGVWDSSPNRQSTQ 311

Query: 259 FQNHSNQPFSSH--TPTTEESNNTPIIG-------------PPS---------------- 287
             +        H  + T +++  T  +G             P S                
Sbjct: 312 IWDFHLGRLRGHKDSNTFDDAYGTGDMGFTIKNLVSFXKTSPTSAKLLGETYQINCSSVH 371

Query: 288 DYRPHEFETWESTKVVQG--------MHHSILHGSETANEAI----------------TQ 323
           D  P       +T + QG        M +  L G   + +AI                T+
Sbjct: 372 DDIPSFNNNVNNTTLSQGAVTCESINMPNDKLKGGSKSFQAIKQPIIIKGDSILSTSTTK 431

Query: 324 FDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377
            D ELLA+NRGNAM RYKEK+K R Y K IRYESRKARADTRKRVKGRFVKA+E
Sbjct: 432 ADLELLAQNRGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKANE 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468832|ref|XP_004152125.1| PREDICTED: zinc finger protein CONSTANS-LIKE 14-like [Cucumis sativus]

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 179/475 (37%), Positives = 238/475 (50%), Gaps = 116/475 (24%)

Query: 17  CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTEN 76
           CDFCN ++A+LYC ADSAKLCLFCD+ +HSAN LS +H+RSQICDNCR+EPVS+RC T+N
Sbjct: 14  CDFCNDQVAILYCRADSAKLCLFCDKHVHSANLLSRKHVRSQICDNCRSEPVSIRCSTDN 73

Query: 77  LMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASF--FDLMGDDLL-------- 126
           L+LCQ+CDWD+H + SVS+ H+R+ +EGF+GCPS  EL S   FDL GD  L        
Sbjct: 74  LVLCQECDWDAHGSCSVSAAHDRTPIEGFTGCPSALELVSLWGFDL-GDKKLEESEMLVQ 132

Query: 127 NLGSGFGVYEP--------KMLNFEELAVPTQNCSVFMSGN----------------KYK 162
           N      +  P            F +L VP  N  +F + N                K+K
Sbjct: 133 NWVCSQDLVMPIDSWASRASATAFNDLIVPNDNPFLFANLNCTDAASMFKKQSPSCGKHK 192

Query: 163 KEVYEQLVEIGKRDL----------VRFNGNGAE------LGPGTTTSICDQYGYTQSLE 206
           + +Y+QLVE+ KRD            R    G E      + P TT   C   G  +  +
Sbjct: 193 QVIYKQLVELLKRDFEGGDDVEGDDTRDGDAGGEDVGLQSMVPETTNGDCYWQGDLEGRQ 252

Query: 207 VENIDE--------EKLLNPKTAFTSLLAFPNNTDLREHDRCVADGKLMWDWDPSYPAAQ 258
           +   D+          LL  + +FTSLL  P++  L++++R V D   +WD  P+  + Q
Sbjct: 253 ISKEDDGVFVGAAPPPLLQQQASFTSLLTMPSHVGLKDNERSV-DETGVWDSSPNRQSTQ 311

Query: 259 FQNHSNQPFSSH--TPTTEESNNTPIIG--------------PPS--------------- 287
             +        H  + T +++  T  +G              P S               
Sbjct: 312 IWDFHLGRLRGHKDSNTFDDAYGTGDMGFTIKNFGEFLKETSPTSAKLLGETYQINCSSV 371

Query: 288 -DYRPHEFETWESTKVVQG--------MHHSILHGSETANEAI----------------T 322
            D  P       +T + QG        M +  L G   + +AI                T
Sbjct: 372 HDDIPSFNNNVNNTTLSQGAVTCESINMPNDKLKGGSKSFQAIKQPIIIKGDSILSTSTT 431

Query: 323 QFDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377
           + D ELLA+NRGNAM RYKEK+K R Y K IRYESRKARADTRKRVKGRFVKA+E
Sbjct: 432 KADLELLAQNRGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKANE 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072504|ref|XP_002303763.1| predicted protein [Populus trichocarpa] gi|222841195|gb|EEE78742.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 174/424 (41%), Positives = 221/424 (52%), Gaps = 75/424 (17%)

Query: 17  CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTEN 76
           CDFC+ + AVLYC ADSAKLCLFCDQ +HSAN LS +H+R+QICDNC +E VSVRC T+N
Sbjct: 14  CDFCSEQTAVLYCRADSAKLCLFCDQHVHSANLLSRKHVRAQICDNCNSELVSVRCATDN 73

Query: 77  LMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFFDLMGDDLLNLGSGFGVYE 136
           L+LCQ+CDWD+H + SVS+ H+R+ +EGFSGCP+  +LAS +            GF + E
Sbjct: 74  LVLCQECDWDAHGSCSVSASHDRTIIEGFSGCPTALDLASIW------------GFDLEE 121

Query: 137 PKMLNFEELAVP----------TQNCSVFM------SGNKYKKEVYEQLVEIGKRDLVRF 180
            K   F++L VP            N  VF       S  KYK  +Y+QLVE+ KRDL+  
Sbjct: 122 KKQEPFQDLMVPNENSNNGNRNVDNVMVFGNVSKSPSCGKYKHVIYKQLVELLKRDLMGG 181

Query: 181 NGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLAFP----NNTDLRE 236
            G G E G G    + +Q  +T  L +      K+          L F     +   LR 
Sbjct: 182 GGGGGEGGGGGEQLLHEQMPFTSLLMLPTEVGVKISRVSNNNRKFLPFQIWDFHLGQLRS 241

Query: 237 HDRCVADGKLMWDW---DPSYPAAQFQNHSNQPFSSHT--------PTTEESNNTPIIGP 285
           HD     G+L  ++   D  +    F     +   ++T        P T ESNN PI   
Sbjct: 242 HDE---SGQLEIEYGANDAGFVIKNFSEPMKETSLTNTKMLGNIQGPATSESNNLPIARV 298

Query: 286 PSDYRPHEFETWESTKVVQGMHHSIL-HGSETANEAITQFDKELLAKNRGNAMLRYKEKK 344
            S     + +   S+K VQ M  SIL  G     EA T+ D ELL +NRG+AM RYKEKK
Sbjct: 299 LSGTAFCKPKCSGSSKDVQFMEQSILVRGEGFKTEAATKVDMELLVRNRGDAMQRYKEKK 358

Query: 345 KNRSYG----------------------------KQIRYESRKARADTRKRVKGRFVKAS 376
           K R Y                             K IRYESRKARAD+RKRVKGRFVK +
Sbjct: 359 KTRRYAYLLLLVISTACLSSNALCTVKFCINRYDKHIRYESRKARADSRKRVKGRFVKTT 418

Query: 377 EISD 380
           E  D
Sbjct: 419 EAPD 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785055|emb|CAN77743.1| hypothetical protein VITISV_043320 [Vitis vinifera]

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 177/453 (39%), Positives = 229/453 (50%), Gaps = 92/453 (20%)

Query: 1   MEDSFKLSPGSSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQIC 60
           ME + K  P +++   CDFC+SK AV++C ADSAKLCL CD+ +HSANALS +HLRSQIC
Sbjct: 1   METTSKSRPSAAVP--CDFCDSKTAVVHCRADSAKLCLLCDRHVHSANALSRKHLRSQIC 58

Query: 61  DNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFFDL 120
           DNCR EPVS RC T+NL LCQ CDWDSH N SV S+HER+ VE FSGCPS  ELAS F +
Sbjct: 59  DNCRTEPVSFRCFTDNLALCQSCDWDSHGNCSVPSLHERTPVESFSGCPSPLELASVFRV 118

Query: 121 MGDDLLNLGSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKE----VYEQLVEIGKRD 176
              DL +    +  +    +N ++  VP +NC     G K +K     VYEQLV     D
Sbjct: 119 ---DLKD--GNWSSWNFGSVNVQDFVVPGENCYAGC-GTKVEKNGISVVYEQLV-----D 167

Query: 177 LVR---------------FNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTA 221
           L+R                  +GAELGPGT    C   G  Q ++++N D+E+LL  +T 
Sbjct: 168 LIRSDVDVVRGDVDGDGDEGEDGAELGPGTPGR-CANMGNFQGVDLDNGDDEELLRQQTP 226

Query: 222 FTSLLAFPNNTDLREHD---RCVADGKLMWDWDP-SYPAAQFQNHSNQPFSSHTPTTEES 277
           FTSLL  P   D R+      C  +G  MWD    SY A Q  +           T+ E+
Sbjct: 227 FTSLLMLPTPVDARDTGCGYGCAVEGDAMWDRGHLSYQAPQIWDFHLGRSRICKETSPEA 286

Query: 278 -----NNTPIIGPPSDYRPHEFETWESTKVVQGM--------HHSILHGSETANEAIT-- 322
                N+  +I   S+    +  +   TK +QGM        H  IL  +  +N+A++  
Sbjct: 287 GYDVDNSGFVIKNYSEIT--KGSSLTRTKALQGMYEMNCTTTHEDILSKNSHSNKALSSQ 344

Query: 323 --------------------------------QFDKELLAKNRGNA------MLRYKEKK 344
                                           QF   L+             M    + +
Sbjct: 345 GPTTAESNNIPIVGPSSESWTAEPNTNSIKSMQFKDLLIGSGTARTETTNVDMELLAQNR 404

Query: 345 KNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377
            +  Y K IRYESRKARADTRKRVKGRFVKAS+
Sbjct: 405 GHAIYEKHIRYESRKARADTRKRVKGRFVKASD 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543150|ref|XP_002512638.1| hypothetical protein RCOM_1437660 [Ricinus communis] gi|223548599|gb|EEF50090.1| hypothetical protein RCOM_1437660 [Ricinus communis]

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 178/477 (37%), Positives = 231/477 (48%), Gaps = 111/477 (23%)

Query: 9   PGSSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPV 68
           P S     CDFC+ ++AVLYC ADSAKLCLFCDQ +HSAN LS +H+RSQICDNC   PV
Sbjct: 6   PQSKERVPCDFCSEQIAVLYCRADSAKLCLFCDQHVHSANLLSRKHVRSQICDNCSKGPV 65

Query: 69  SVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASF--FDLMGDDL- 125
           +VRC T+NL+LCQ+CDWD+H + SVS+ H+R+ VEG SGCPS  ELAS   FDL   +  
Sbjct: 66  TVRCGTDNLVLCQECDWDAHGSCSVSASHDRTPVEGLSGCPSALELASIWGFDLEDKNFD 125

Query: 126 ----LNLGSGFGVYEP-------KMLNFEELAVPTQNCSVF---------MSGNKYKKE- 164
               L++       EP       K   +++L VP     +F         + G+K K+  
Sbjct: 126 ESEPLSIDDMVMQIEPSCSWVFNKSSGYQDLIVPNDKGIIFGNMSYGGEMLMGSKRKQSP 185

Query: 165 --------VYEQLVEIGKRDLVRFNGNGA---ELGP---------GTTTSICDQYGYTQS 204
                   VY+QL+E+ KR+L+  +G G     L P         G   +    +G    
Sbjct: 186 SCGKDKQVVYKQLMELLKRNLMSADGGGDSGGNLVPETPIKSGWQGDNNAEGGDFGNGNH 245

Query: 205 LEVENIDEEKLLNPKTAFTSLLAFPNNTDLREHDR--CVADGKLMWD----------WDP 252
             V  I +++    +  FTSLL  P+  DL+   R     +  LMWD          WD 
Sbjct: 246 GGVNVIPQQQ----EVGFTSLLTMPSQMDLKSIARGELSTEDHLMWDNNASARGTQIWD- 300

Query: 253 SYPAAQFQNH-------------------------------SNQPF----------SSHT 271
            +   Q + H                               SN+            ++H 
Sbjct: 301 -FNLGQLRTHDESDQFEIAYGTNGAGFMIKNFGELMKDTSLSNEKLLGDMYRISCPNAHD 359

Query: 272 -------PTTEESNNTPIIGPPSDYRPHEFETWESTKVVQ-GMHHSILHGSETANEAITQ 323
                  P T ESNN PI          + +    +K V+      I+ G        T+
Sbjct: 360 DMTLFNGPATSESNNLPIARASLGSTFGKMKRTCGSKDVEFPQQRIIVRGDSMRTVPPTK 419

Query: 324 FDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASEISD 380
            D E LAKNRG AM  YKEK+KNR Y K IRYESRKARADTRKRVKGRFVKAS+  D
Sbjct: 420 ADMEQLAKNRGIAMQHYKEKRKNRRYDKHIRYESRKARADTRKRVKGRFVKASDAPD 476

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571031|ref|NP_973589.1| zinc finger protein CONSTANS-LIKE 14 [Arabidopsis thaliana] gi|225898565|dbj|BAH30413.1| hypothetical protein [Arabidopsis thaliana] gi|330253750|gb|AEC08844.1| zinc finger protein CONSTANS-LIKE 14 [Arabidopsis thaliana]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 162/413 (39%), Positives = 214/413 (51%), Gaps = 70/413 (16%)

Query: 14  LALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCC 73
           +  C+FC  + AVL+C AD+AKLCL CDQ +HSAN LS +H+RSQICDNC  EPVSVRC 
Sbjct: 9   VVACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCF 68

Query: 74  TENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFF--DLMG-------DD 124
           T+NL+LCQ+CDWD H + S S+ HERS+VEGFSGCPSV ELA+ +  DL G       D+
Sbjct: 69  TDNLVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWGIDLKGKKKEDDEDE 128

Query: 125 LL-NLGSGFGVYEPKMLNFEELAVPTQ-NC-SVFMSGNKYKKEVYEQLVEIGKRDLVRFN 181
           L  N G G   +       +EL VP   +C     S  + K+ V+EQL E+ KR  V   
Sbjct: 129 LTKNFGMGLDSWGSGSNIVQELIVPYDVSCKKQSFSFGRSKQVVFEQL-ELLKRGFVE-- 185

Query: 182 GNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLL---NPKTAFTSLLAFP----NNTDL 234
           G G  + P                  E I+    +   +P T+FTSLL       N    
Sbjct: 186 GEGEIMVP------------------EGINGGGSISQPSPTTSFTSLLMSQSLCGNGMQW 227

Query: 235 REHDRCVADGKLMWDW------DPSYPAAQFQNHSNQPFSSHTPTTEESNNTPIIGPPSD 288
              +        +WD+      +P  P+      S   F++ T    ++  T +      
Sbjct: 228 NATNHSTGQNTQIWDFNLGQSRNPDEPSPVETKGSTFTFNNVTHLKNDTRTTNMNAFKES 287

Query: 289 YRPHEF--------ETWESTKVVQGMH-----------HSILHGSETANE-----AITQF 324
           Y+            ET +S  +   +H           H   H + T+N      A+T  
Sbjct: 288 YQEDSVHSTSTKGQETSKSNNIPAAIHSHKSSNDSCGLHCTEHIAITSNRATRLVAVTNA 347

Query: 325 DKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377
           D E +A+NR NAM RYKEKKK R Y K IRYE+RKARA+TR RVKGRFVKA++
Sbjct: 348 DLEQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 400

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685731|ref|NP_850211.1| zinc finger protein CONSTANS-LIKE 14 [Arabidopsis thaliana] gi|53618008|sp|O22800.2|COL14_ARATH RecName: Full=Zinc finger protein CONSTANS-LIKE 14 gi|25083442|gb|AAN72078.1| putative CONSTANS-like B-box zinc finger protein [Arabidopsis thaliana] gi|330253749|gb|AEC08843.1| zinc finger protein CONSTANS-LIKE 14 [Arabidopsis thaliana]

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/414 (39%), Positives = 215/414 (51%), Gaps = 71/414 (17%)

Query: 14  LALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCC 73
           +  C+FC  + AVL+C AD+AKLCL CDQ +HSAN LS +H+RSQICDNC  EPVSVRC 
Sbjct: 9   VVACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCF 68

Query: 74  TENLMLCQDCDWDSHYNSSVSSVHERSSVEGFSGCPSVTELASFF--DLMG-------DD 124
           T+NL+LCQ+CDWD H + S S+ HERS+VEGFSGCPSV ELA+ +  DL G       D+
Sbjct: 69  TDNLVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWGIDLKGKKKEDDEDE 128

Query: 125 LL-NLGSGFGVYEPKMLNFEELAVPTQ-NC-SVFMSGNKYKKEVYEQLVEIGKRDLVRFN 181
           L  N G G   +       +EL VP   +C     S  + K+ V+EQL E+ KR  V   
Sbjct: 129 LTKNFGMGLDSWGSGSNIVQELIVPYDVSCKKQSFSFGRSKQVVFEQL-ELLKRGFVE-- 185

Query: 182 GNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLL---NPKTAFTSLLAFP----NNTDL 234
           G G  + P                  E I+    +   +P T+FTSLL       N    
Sbjct: 186 GEGEIMVP------------------EGINGGGSISQPSPTTSFTSLLMSQSLCGNGMQW 227

Query: 235 REHDRCVADGKLMWDW------DPSYPAAQFQNHSNQPFSSHTPTTEESNNTPIIGPPSD 288
              +        +WD+      +P  P+      S   F++ T    ++  T +      
Sbjct: 228 NATNHSTGQNTQIWDFNLGQSRNPDEPSPVETKGSTFTFNNVTHLKNDTRTTNMNAFKES 287

Query: 289 YRPHEF---------ETWESTKVVQGMH-----------HSILHGSETANE-----AITQ 323
           Y+  +          ET +S  +   +H           H   H + T+N      A+T 
Sbjct: 288 YQQEDSVHSTSTKGQETSKSNNIPAAIHSHKSSNDSCGLHCTEHIAITSNRATRLVAVTN 347

Query: 324 FDKELLAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377
            D E +A+NR NAM RYKEKKK R Y K IRYE+RKARA+TR RVKGRFVKA++
Sbjct: 348 ADLEQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 401

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
TAIR|locus:2010504	433	BBX13 "B-box domain protein 13	0.287	0.254	0.581	1.9e-57
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.331	0.382	0.454	5.9e-42
TAIR|locus:2164718	373	BBX8 "B-box domain protein 8"	0.295	0.302	0.444	2e-41
TAIR|locus:2129860	330	BBX9 "B-box domain protein 9"	0.271	0.315	0.415	1.9e-40
TAIR|locus:2091082	372	COL9 "CONSTANS-like 9" [Arabid	0.898	0.924	0.320	2.4e-37
TAIR|locus:2051104	402	BBX12 "B-box domain protein 12	0.908	0.865	0.322	9.2e-36
TAIR|locus:2088748	364	BBX10 "B-box domain protein 10	0.248	0.260	0.443	1.7e-34
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.203	0.265	0.448	6e-22
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.203	0.219	0.410	2e-21
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.187	0.207	0.402	2.2e-21

TAIR|locus:2010504 BBX13 "B-box domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
 Identities = 64/110 (58%), Positives = 77/110 (70%)

Query:    11 SSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSV 70
             SS    CDFC  + AVL+C AD+AKLCL CDQQ+H+AN LS +H+RSQICDNC  EPVSV
Sbjct:     3 SSERVPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSV 62

Query:    71 RCCTENLMLCQDCDWDSHYNXXXXXXXXXXXXXGFSGCPSVTELASFFDL 120
             RC T+NL+LCQ+CDWD H +             GFSGCPS  ELA+ + L
Sbjct:    63 RCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWGL 112

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 60/132 (45%), Positives = 80/132 (60%)

Query:    16 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTE 75
             LCD+C+S +A++YC ADSAKLCL CD+Q+H AN L  +H RS +CD+C   P S+ C TE
Sbjct:    12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query:    76 NLMLCQDCDWDSHYNXXXXXXXXXXXXXGFSGCPSVTELASFFDLMGDDLLNLGSGFGVY 135
               +LCQ+CDW  H               GF+GCPSV EL +   L  DDL  L SG    
Sbjct:    72 RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAIVGL--DDL-TLDSGLLWE 126

Query:   136 EPKMLNFEELAV 147
              P++++  +L V
Sbjct:   127 SPEIVSLNDLIV 138

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2164718 BBX8 "B-box domain protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 52/117 (44%), Positives = 71/117 (60%)

Query:    16 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTE 75
             +CDFC  + +++YC +D+A LCL CD+ +HSANALS RH R+ +C+ C A+P SVRC  E
Sbjct:     4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDE 63

Query:    76 NLMLCQDCDWDSH--YNXXXXXXXXXXXXXGFSGCPSVTELASFFDLMGDDLLNLGS 130
              + LCQ+CDW  H   N              +SGCPS  EL+S +    D  LN+ S
Sbjct:    64 RVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMD--LNISS 118

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2129860 BBX9 "B-box domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
 Identities = 44/106 (41%), Positives = 61/106 (57%)

Query:    13 MLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRC 72
             M A CDFC ++ A++YC +DSAKLCL CD  +HSAN LS RH RS +C+ C  +P +V C
Sbjct:     1 MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHC 60

Query:    73 CTENLMLCQDCDWDSHYNXXXXXXXXXXXXXGFSGCPSVTELASFF 118
               EN+ LCQ C W +  +              +S CPS ++    +
Sbjct:    61 MNENVSLCQGCQWTA--SNCTGLGHRLQSLNPYSDCPSPSDFGKIW 104

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091082 COL9 "CONSTANS-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 123/384 (32%), Positives = 174/384 (45%)

Query:    16 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTE 75
             +CDFC  + +++YC +D+A LCL CD+ +HSANALS RH R+ +C+ C A+P +VRC  E
Sbjct:     4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEE 63

Query:    76 NLMLCQDCDWDSHYNXXXXXXXXXXXX---------XGFSGCPSVTELASFFDLMGDDLL 126
              + LCQ+CDW  H N                       +SGCPS +ELAS +    D  L
Sbjct:    64 RVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD--L 121

Query:   127 NLGSGFGVYEPKMLNFEELAVPTQNCSVFMSGNKYKKEVYEQLVEIGKRDLVRFNGNGAE 186
               G      E  M+N ++   PT   +     N+ KK+V      I +   V    + + 
Sbjct:   122 -AGQSICEQELGMMNIDDDG-PTDKKTC----NEDKKDVLVGSSSIPETSSVPQGKSSSA 175

Query:   187 LGPGTTTSICDQYGYTQSLEVENIDE--EKLLNPKTAFT---SLLAFPNNTDL-REHDRC 240
                G      D YG     EV+   E  E+L    TAF     L        L  +H   
Sbjct:   176 KDVGMCED--DFYGNLGMDEVDMALENYEELFG--TAFNPSEELFGHGGIDSLFHKHQTA 231

Query:   241 VADGKLMWDWDPSYPAAQFQNHSNQPFSSHTPTTEESNNTPIIGPPSDYRPHEFETWEST 300
                G  +    P+     F +   +P          SN +   G   +    +F+   ++
Sbjct:   232 PEGGNSV---QPAGSNDSFMSSKTEPIICFASKPAHSNIS-FSGVTGESSAGDFQECGAS 287

Query:   301 KVVQGMHHSILHGSETANEAITQFDKELLAKN--RGNAMLRYKEKKKNRSYGKQIRYESR 358
               +Q      L G         Q D    + +  R NA++RYKEKKK R + K++RY SR
Sbjct:   288 SSIQ------LSGEPPWYPPTLQ-DNNACSHSVTRNNAVMRYKEKKKARKFDKRVRYASR 340

Query:   359 KARADTRKRVKGRFVKASEISDVE 382
             KARAD R+RVKGRFVKA E  D +
Sbjct:   341 KARADVRRRVKGRFVKAGEAYDYD 364

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP;RCA

TAIR|locus:2051104 BBX12 "B-box domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 130/403 (32%), Positives = 189/403 (46%)

Query:     8 SPGSSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEP 67
             S   S++A C+FC  + AVL+C AD+AKLCL CDQ +HSAN LS +H+RSQICDNC  EP
Sbjct:     4 STTESVVA-CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEP 62

Query:    68 VSVRCCTENLMLCQDCDWDSHYNXXXXXXXXXXXXXGFSGCPSVTELASFF--DLMG--- 122
             VSVRC T+NL+LCQ+CDWD H +             GFSGCPSV ELA+ +  DL G   
Sbjct:    63 VSVRCFTDNLVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWGIDLKGKKK 122

Query:   123 ----DDLL-NLGSGFGVYEPKMLNFEELAVPTQ-NCSV-FMSGNKYKKEVYEQLVEIGKR 175
                 D+L  N G G   +       +EL VP   +C     S  + K+ V+EQL E+ KR
Sbjct:   123 EDDEDELTKNFGMGLDSWGSGSNIVQELIVPYDVSCKKQSFSFGRSKQVVFEQL-ELLKR 181

Query:   176 DLVRFNGNGAELGPGTTTSICDQYGYTQSLEVENIDEEKLLNPKTAFTSLLAFP----NN 231
               V   G G  + P          G        +I +    +P T+FTSLL       N 
Sbjct:   182 GFVE--GEGEIMVPEGING-----G-------GSISQP---SPTTSFTSLLMSQSLCGNG 224

Query:   232 TDLREHDRCVADGKLMWDWD------PSYPAAQFQNHSNQPFSSHTPTTEESNNTPIIGP 285
                   +        +WD++      P  P+      S   F++ T    ++  T +   
Sbjct:   225 MQWNATNHSTGQNTQIWDFNLGQSRNPDEPSPVETKGSTFTFNNVTHLKNDTRTTNMNAF 284

Query:   286 PSDYRPHEFETWESTKVVQ-GMHHSI---LHGSETANEAITQFDKELLA--KNRGNAMLR 339
                Y+  +     STK  +    ++I   +H  +++N++      E +A   NR   ++ 
Sbjct:   285 KESYQQEDSVHSTSTKGQETSKSNNIPAAIHSHKSSNDSCGLHCTEHIAITSNRATRLVA 344

Query:   340 Y-----KEKKKNRSYGKQIRYESRKA--RADTRKRVKGRFVKA 375
                   ++  +NR    Q RY+ +K   R D   R + R  +A
Sbjct:   345 VTNADLEQMAQNRDNAMQ-RYKEKKKTRRYDKTIRYETRKARA 386

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2088748 BBX10 "B-box domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 43/97 (44%), Positives = 57/97 (58%)

Query:    17 CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTEN 76
             CD C +  A++YC +D AKLCL CD  +HSAN LS RH+RS IC+ C ++P ++RC  E 
Sbjct:     5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64

Query:    77 LMLCQDCDWDSHYNXXXXXXXXXXXXXGFSGCPSVTE 113
             +  CQ C W  H +              FSGCPS T+
Sbjct:    65 VSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTD 99

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
 Identities = 35/78 (44%), Positives = 44/78 (56%)

Query:    11 SSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSV 70
             +S   LCD C S  A L+C AD+A LC  CD +IH+AN L+ RH R  +C+ C   P  V
Sbjct:     2 ASSSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHV 61

Query:    71 RCCTENLMLCQDCDWDSH 88
              C  +   LC  CD D H
Sbjct:    62 TCKADAAALCVTCDRDIH 79

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 32/78 (41%), Positives = 43/78 (55%)

Query:    11 SSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSV 70
             S+    CD C S    +YC ADSA LC  CD Q+H+AN L+ RH R ++C +C   P + 
Sbjct:     6 SNWAQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAF 65

Query:    71 RCCTENLMLCQDCDWDSH 88
              C  +   LC  CD + H
Sbjct:    66 FCKADAASLCTTCDSEIH 83

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query:    17 CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTEN 76
             CD C S    +YC ADSA LC  CD ++H+AN ++ RH R ++C +C + P +  C  + 
Sbjct:    16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADA 75

Query:    77 LMLCQDCDWDSH 88
               LC  CD + H
Sbjct:    76 ASLCTACDAEIH 87

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22800	COL14_ARATH	No assigned EC number	0.3913	0.8955	0.8532	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I002391 hypothetical protein (498 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	383
pfam06203	45	pfam06203, CCT, CCT motif	2e-21
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	7e-07
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	5e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-05
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	4e-04

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 85.7 bits (213), Expect = 2e-21
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query: 333 RGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377
           R  A+LRYKEK+K R + K+IRY SRKA A++R RVKGRFVK SE
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 16 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSA 47
          LCD    +   L+C  D A LC+ CD  +HS 
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVHSG 33

Length = 39

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 16 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHS 46
           CD    + A  +C    A LC  CD+  H 
Sbjct: 5  KCDSHGDEPAEFFCEECGALLCRTCDEAEHR 35

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 59 ICDNCRAEPVSVRCCTENLMLCQDCDWDSH 88
          +CD    EP+S+ C T+  +LC DCD   H
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH 31

Length = 39

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 10/31 (32%)

Query: 16 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHS 46
          LC     K   LYC      LC  C    H 
Sbjct: 5  LCPEHEEKPLELYCEDCQQLLCEECALSGHK 35

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.77
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.21
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.01
smart00336	42	BBOX B-Box-type zinc finger.	96.69
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.67
smart00336	42	BBOX B-Box-type zinc finger.	96.22
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	95.82
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	95.74
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	95.28
KOG4367	699	consensus Predicted Zn-finger protein [Function un	93.87

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.77  E-value=1.1e-19  Score=132.48  Aligned_cols=45  Identities=64%  Similarity=0.976  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhhhhhhhcCCCCCcccccCCC
Q 016775          333 RGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE  377 (383)
Q Consensus       333 R~~~~~ry~eKr~~R~~~k~irY~~Rk~~A~~R~RvkGrFvk~~~  377 (383)
                      |+++|+||++||++|+|+|+|+|++||++||.|||||||||+.+|
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            688999999999999999999999999999999999999999875

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.21  E-value=0.00028  Score=48.35  Aligned_cols=38  Identities=39%  Similarity=0.823  Sum_probs=33.1

Q ss_pred             ccCCCCCCCeeEEecCCCccccCccCCCCCCCCCCCCCCceeee
Q 016775           59 ICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSV  102 (383)
Q Consensus        59 LCd~C~~~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~pv  102 (383)
                      +|+.|..+++.+||..|...+|..|++..|.      .|.+.||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6999999899999999999999999987663      5888775

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.01  E-value=0.00043  Score=47.42  Aligned_cols=38  Identities=39%  Similarity=0.756  Sum_probs=33.0

Q ss_pred             cCcccCCCCcEEEeeCCCcccchhhhccccccchhhhhcccccc
Q 016775           16 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQI   59 (383)
Q Consensus        16 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~VHsaN~L~~RH~Rv~L   59 (383)
                      .|+.++.+++.+||..|.+.+|..|+...|.      .|.++++
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6899998899999999999999999988775      5777653

>smart00336 BBOX B-Box-type zinc finger

Probab=96.69  E-value=0.0017  Score=45.00  Aligned_cols=41  Identities=29%  Similarity=0.545  Sum_probs=33.9

Q ss_pred             cccccCCCCCCCeeEEecCCCccccCccCCCCCCCCCCCCCCceeee
Q 016775           56 RSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSV  102 (383)
Q Consensus        56 Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~pv  102 (383)
                      |...|+.|...++.+||..|...+|..|....|      ..|.+.||
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            567899999999999999999999999986544      35766654

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.67  E-value=0.001  Score=46.80  Aligned_cols=40  Identities=28%  Similarity=0.543  Sum_probs=33.8

Q ss_pred             ccccCCCCCCCeeEEecCCCccccCccCCCCCCCCCCCCCCceeee
Q 016775           57 SQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSV  102 (383)
Q Consensus        57 v~LCd~C~~~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~pv  102 (383)
                      .+.|+.|...++.+||..|..++|..|....|..      |..+||
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4689999999999999999999999999877753      877765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=96.22  E-value=0.0034  Score=43.52  Aligned_cols=39  Identities=28%  Similarity=0.457  Sum_probs=33.0

Q ss_pred             CccCcccCCCCcEEEeeCCCcccchhhhccccccchhhhhccccc
Q 016775           14 LALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQ   58 (383)
Q Consensus        14 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~VHsaN~L~~RH~Rv~   58 (383)
                      ...|..+...++.+||..|.+.+|..|....|      +.|.+.+
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~   41 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVL   41 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceec
Confidence            56899999889999999999999999998766      3466554

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.82  E-value=0.0059  Score=42.89  Aligned_cols=41  Identities=22%  Similarity=0.322  Sum_probs=34.1

Q ss_pred             CCccCcccCCCCcEEEeeCCCcccchhhhccccccchhhhhcccccc
Q 016775           13 MLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQI   59 (383)
Q Consensus        13 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~VHsaN~L~~RH~Rv~L   59 (383)
                      ....|..|...++.+||..+...+|..|....|..      |..++|
T Consensus         2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             cCccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            35689999998899999999999999999998864      766543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=95.74  E-value=0.0058  Score=40.57  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHhhccCCCCcccch
Q 016775          330 AKNRGNAMLRYKEKKKNRSYGKQIRYE  356 (383)
Q Consensus       330 ~~~R~~~~~ry~eKr~~R~~~k~irY~  356 (383)
                      |..|...|+||.||||.|... +..|.
T Consensus         1 P~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    1 PIARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             -----HHHHHHHHHH------------
T ss_pred             CchHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            357899999999999999987 66664

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=95.28  E-value=0.0068  Score=55.42  Aligned_cols=42  Identities=40%  Similarity=0.703  Sum_probs=40.2

Q ss_pred             cHHHHHHHHHHHHHHhhccCCCCcccchhhhhhhhcCCCCCc
Q 016775          329 LAKNRGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKG  370 (383)
Q Consensus       329 ~~~~R~~~~~ry~eKr~~R~~~k~irY~~Rk~~A~~R~RvkG  370 (383)
                      ....|...+.||+++++.|.|.++|+|..||..|+.|+|+||
T Consensus       289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (340)
T KOG1601|consen  289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG  330 (340)
T ss_pred             ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence            577889999999999999999999999999999999999999

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=93.87  E-value=0.013  Score=61.11  Aligned_cols=76  Identities=18%  Similarity=0.399  Sum_probs=64.1

Q ss_pred             CCCccCcccCCCC--cEEEeeCCCcccchhhhccccccchhhhhcccc----------------cccCCCCCCCeeEEec
Q 016775           12 SMLALCDFCNSKL--AVLYCTADSAKLCLFCDQQIHSANALSLRHLRS----------------QICDNCRAEPVSVRCC   73 (383)
Q Consensus        12 ~~~~~Cd~C~~~~--A~vyC~aD~A~LC~~CD~~VHsaN~L~~RH~Rv----------------~LCd~C~~~pAsv~C~   73 (383)
                      ...-.|.+|++++  |.|+|..+..+.|..|..+.|-+-.-..+|--+                ..|..+..+.-+.||.
T Consensus       160 ~aa~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~  239 (699)
T KOG4367|consen  160 AAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCV  239 (699)
T ss_pred             HHhhhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEE
Confidence            3456799999866  999999999999999999999876656677433                3599999999999999


Q ss_pred             CCCccccCccCCCC
Q 016775           74 TENLMLCQDCDWDS   87 (383)
Q Consensus        74 ~d~a~LC~~CD~~~   87 (383)
                      .|.+++|-.|-.+.
T Consensus       240 ~ck~pvc~~clee~  253 (699)
T KOG4367|consen  240 QCKMPVCYQCLEEG  253 (699)
T ss_pred             ecCChHHHHHHHhh
Confidence            99999999997653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	4e-05

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 16  LCDFC---NSKLAVLYCTADSAKLCLFCDQQIHSANALSLRH----------LRSQICDN 62
           LC FC    ++ AV  C       C  C +  H        H          +R  +C  
Sbjct: 5   LCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLE 64

Query: 63  CRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHE 98
              E V++ C T++ ++C  C     H +  V+++ E
Sbjct: 65  HEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSE 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	98.39
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	94.75
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	92.2
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	91.99
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	91.74
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	90.34
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	88.6
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	88.26
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	85.9
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	85.11
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	82.86
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	82.47
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	82.19

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=98.39  E-value=1.4e-07  Score=76.47  Aligned_cols=76  Identities=25%  Similarity=0.507  Sum_probs=65.4

Q ss_pred             CccCcccCC---CCcEEEeeCCCcccchhhhccccccchhhhhcccc----------cccCCCCCCCeeEEecCCCcccc
Q 016775           14 LALCDFCNS---KLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRS----------QICDNCRAEPVSVRCCTENLMLC   80 (383)
Q Consensus        14 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~VHsaN~L~~RH~Rv----------~LCd~C~~~pAsv~C~~d~a~LC   80 (383)
                      ...|++|..   .+|+++|..+.+.||..|...+|..+...++|..+          ..|+.+...+..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            367999984   68999999999999999999999977766788764          36999988889999999999999


Q ss_pred             CccCC-CCCC
Q 016775           81 QDCDW-DSHY   89 (383)
Q Consensus        81 ~~CD~-~~H~   89 (383)
                      ..|.. ..|.
T Consensus        83 ~~C~~~~~H~   92 (101)
T 2jun_A           83 ALCKLVGRHR   92 (101)
T ss_dssp             HHHHHHTTTS
T ss_pred             hhcCCCCCcC
Confidence            99986 4554

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=92.20  E-value=0.058  Score=38.10  Aligned_cols=44  Identities=25%  Similarity=0.563  Sum_probs=35.2

Q ss_pred             cccccccCCCCCCCeeEEecCCCccccCccCCCCCCCCCCCCCCceeeec
Q 016775           54 HLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVE  103 (383)
Q Consensus        54 H~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~pv~  103 (383)
                      ..+...|+.+..++..+||..|...+|..|....|.      .|...||.
T Consensus         3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~   46 (50)
T 2yvr_A            3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE   46 (50)
T ss_dssp             CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred             CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence            356678999988899999999999999999765443      47676664

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=91.99  E-value=0.045  Score=33.90  Aligned_cols=19  Identities=37%  Similarity=0.587  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHhhccCCCC
Q 016775          333 RGNAMLRYKEKKKNRSYGK  351 (383)
Q Consensus       333 R~~~~~ry~eKr~~R~~~k  351 (383)
                      |...|+||.||||.|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            5678999999999987654

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=91.74  E-value=0.065  Score=39.53  Aligned_cols=45  Identities=18%  Similarity=0.386  Sum_probs=35.1

Q ss_pred             hcccccccCCCCCCCeeEEecCCCccccCccCC-CCCCCCCCCCCCceeeec
Q 016775           53 RHLRSQICDNCRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHERSSVE  103 (383)
Q Consensus        53 RH~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~anslas~H~R~pv~  103 (383)
                      +..+..+|+.+..++..+||..|...+|..|.. ..|.      .|...||+
T Consensus         4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   49 (64)
T 2d8u_A            4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   49 (64)
T ss_dssp             CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred             CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHH
Confidence            455667899998889999999999999999974 3453      36666654

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=90.34  E-value=0.13  Score=36.14  Aligned_cols=41  Identities=20%  Similarity=0.509  Sum_probs=32.2

Q ss_pred             ccccCCCCCCCeeEEecCCCccccCccC-CCCCCCCCCCCCCceeeec
Q 016775           57 SQICDNCRAEPVSVRCCTENLMLCQDCD-WDSHYNSSVSSVHERSSVE  103 (383)
Q Consensus        57 v~LCd~C~~~pAsv~C~~d~a~LC~~CD-~~~H~anslas~H~R~pv~  103 (383)
                      ..+|..+..++..+||..|...+|..|. ...|.      .|..+||+
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence            4579998888899999999999999996 33454      46666654

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=88.60  E-value=0.23  Score=35.38  Aligned_cols=40  Identities=20%  Similarity=0.515  Sum_probs=32.0

Q ss_pred             ccccCCCCCCCeeEEecCCCccccCccCC-CCCCCCCCCCCCceeeec
Q 016775           57 SQICDNCRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHERSSVE  103 (383)
Q Consensus        57 v~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~anslas~H~R~pv~  103 (383)
                      ..+|+.+. ++..+||..|...+|..|.. ..|      ..|...||+
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   48 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLS   48 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECC
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHH
Confidence            35799997 78999999999999999975 344      347777765

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=88.26  E-value=0.13  Score=40.89  Aligned_cols=43  Identities=21%  Similarity=0.430  Sum_probs=34.9

Q ss_pred             cccCCCCC---CCeeEEecCCCccccCccCCCCCCCCCCCCCCcee
Q 016775           58 QICDNCRA---EPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERS  100 (383)
Q Consensus        58 ~LCd~C~~---~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~  100 (383)
                      ..|+.|..   .+|+.+|..|...+|..|....|..+.....|.++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            57999984   58999999999999999987667755555677765

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=85.90  E-value=0.66  Score=31.31  Aligned_cols=31  Identities=19%  Similarity=0.418  Sum_probs=25.4

Q ss_pred             cccCCCCCCCeeEEecCCCccccCccCC-CCCC
Q 016775           58 QICDNCRAEPVSVRCCTENLMLCQDCDW-DSHY   89 (383)
Q Consensus        58 ~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~   89 (383)
                      .+|..+. ++..+||..|...+|..|.. ..|.
T Consensus         4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~   35 (42)
T 1fre_A            4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA   35 (42)
T ss_dssp             CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred             ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence            3688886 77999999999999999986 3443

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=85.11  E-value=0.31  Score=37.68  Aligned_cols=43  Identities=26%  Similarity=0.587  Sum_probs=33.1

Q ss_pred             ccccccCCCCCCCeeEEecCCCccccCccCC-CCCCCCCCCCCCceeeec
Q 016775           55 LRSQICDNCRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHERSSVE  103 (383)
Q Consensus        55 ~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~anslas~H~R~pv~  103 (383)
                      ....+|+.+...+..+||..|...+|..|.. ..|.      .|...||+
T Consensus        16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   59 (84)
T 2dja_A           16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN   59 (84)
T ss_dssp             SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred             CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHH
Confidence            3445899998888999999999999999976 4443      35555554

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.86  E-value=0.65  Score=34.11  Aligned_cols=42  Identities=17%  Similarity=0.388  Sum_probs=32.1

Q ss_pred             ccccccCCCCCCCeeEEecCCCccccCccCC-CCCCCCCCCCCCceeeec
Q 016775           55 LRSQICDNCRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHERSSVE  103 (383)
Q Consensus        55 ~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~anslas~H~R~pv~  103 (383)
                      .+..+|..+. .+..+||..|...+|..|.. ..|      ..|...||+
T Consensus        12 ~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~   54 (59)
T 2yrg_A           12 QKVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTS   54 (59)
T ss_dssp             CCSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECC
T ss_pred             hcCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHH
Confidence            3445799887 67899999999999999975 334      347777765

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=82.47  E-value=0.54  Score=36.61  Aligned_cols=43  Identities=26%  Similarity=0.438  Sum_probs=35.7

Q ss_pred             CccCcccCC---CCcEEEeeCCCcccchhhhccccccchhhhhccc
Q 016775           14 LALCDFCNS---KLAVLYCTADSAKLCLFCDQQIHSANALSLRHLR   56 (383)
Q Consensus        14 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~VHsaN~L~~RH~R   56 (383)
                      ...|++|..   .+|+..|....+.||..|=...|......++|.=
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            578999976   6799999999999999998887876655667753

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=82.19  E-value=0.39  Score=37.47  Aligned_cols=44  Identities=20%  Similarity=0.421  Sum_probs=34.3

Q ss_pred             ccccCCCCC---CCeeEEecCCCccccCccCCCCCCCCCCCCCCcee
Q 016775           57 SQICDNCRA---EPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERS  100 (383)
Q Consensus        57 v~LCd~C~~---~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~  100 (383)
                      ...|+.|..   .+|.-.|..|.+.+|..|-...|........|..+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            367999986   56999999999999999976557665556677654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	383
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	94.81
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	94.1
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	93.11
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	90.52
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	88.94
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	84.83

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0056  Score=42.17  Aligned_cols=36  Identities=28%  Similarity=0.664  Sum_probs=31.9

Q ss_pred             cccccccCCCCCCCeeEEecCCCccccCccCCC-CCC
Q 016775           54 HLRSQICDNCRAEPVSVRCCTENLMLCQDCDWD-SHY   89 (383)
Q Consensus        54 H~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~~-~H~   89 (383)
                      |.|..+|..+..++..+||.+|..++|..|... .|.
T Consensus         2 ~l~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~   38 (47)
T d2dq5a1           2 HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR   38 (47)
T ss_dssp             CCCCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSSTT
T ss_pred             CccCccchhhCCCcceEEcCCCCccCCccCcCcCCcC
Confidence            778899999999999999999999999999653 454

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.0086  Score=43.88  Aligned_cols=48  Identities=25%  Similarity=0.533  Sum_probs=37.6

Q ss_pred             hhhhcccccccCCCCCCCeeEEecCCCccccCccCCC-CCCCCCCCCCCceeeec
Q 016775           50 LSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWD-SHYNSSVSSVHERSSVE  103 (383)
Q Consensus        50 L~~RH~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~~-~H~anslas~H~R~pv~  103 (383)
                      +...+.|...|+.|...+..+||.+|...+|..|... .|.      .|.-.+|+
T Consensus         4 ~~~~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk------~H~~~~i~   52 (71)
T d2djaa1           4 VPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN   52 (71)
T ss_dssp             CCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred             CCccccCCCcCcccCCccceeEcCCCCceeccccccCCCCC------CCcCcCHH
Confidence            3455788889999999999999999999999999643 453      35555554

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.02  Score=39.80  Aligned_cols=40  Identities=20%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             cccCCCCCCCeeEEecCCCccccCccCC-CCCCCCCCCCCCceeeec
Q 016775           58 QICDNCRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHERSSVE  103 (383)
Q Consensus        58 ~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~anslas~H~R~pv~  103 (383)
                      |+|+.+..++..+||.+|...+|..|.. ..|.      .|.-.+|.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~Hk------~H~v~~l~   42 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   42 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCcC------cCcCcCHH
Confidence            6899999999999999999999999964 3453      36555554

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.058  Score=35.76  Aligned_cols=38  Identities=21%  Similarity=0.539  Sum_probs=29.6

Q ss_pred             cccCCCCCCCeeEEecCCCccccCccCCC-CCCCCCCCCCCceeee
Q 016775           58 QICDNCRAEPVSVRCCTENLMLCQDCDWD-SHYNSSVSSVHERSSV  102 (383)
Q Consensus        58 ~LCd~C~~~pAsv~C~~d~a~LC~~CD~~-~H~anslas~H~R~pv  102 (383)
                      .+|..++ ++..+||..|...+|..|... .|      ..|.-+||
T Consensus         2 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           2 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             CcchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            3788884 779999999999999999753 44      34766664

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=88.94  E-value=0.12  Score=33.96  Aligned_cols=37  Identities=19%  Similarity=0.413  Sum_probs=27.8

Q ss_pred             ccCCCCCCCeeEEecCCCccccCccCCC-CCCCCCCCCCCceeee
Q 016775           59 ICDNCRAEPVSVRCCTENLMLCQDCDWD-SHYNSSVSSVHERSSV  102 (383)
Q Consensus        59 LCd~C~~~pAsv~C~~d~a~LC~~CD~~-~H~anslas~H~R~pv  102 (383)
                      .|+.++ ++..+||..|...+|..|... .|.      .|.-+||
T Consensus         2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~v~pi   39 (39)
T d1frea_           2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA------SHNFLPI   39 (39)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT------TCCCCCC
T ss_pred             CCcccC-cceeEEcccCCcEeeccCcCCCCcC------CCcEeeC
Confidence            477785 689999999999999999653 343      4555554

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.83  E-value=0.13  Score=36.33  Aligned_cols=39  Identities=23%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             cccCCCCCCCeeEEecCCCccccCccCCCCCCCCCCCCCCceeeec
Q 016775           58 QICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVE  103 (383)
Q Consensus        58 ~LCd~C~~~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~pv~  103 (383)
                      .+|..++ .+..+||..|...+|..|-...|.      .|.-++|.
T Consensus        12 ~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H~------~H~~~~l~   50 (59)
T d2csva1          12 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVE   50 (59)
T ss_dssp             CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHH
T ss_pred             CchhhhC-CccceECCCCCceECcccCcccCC------CCCeeCHH
Confidence            4799995 689999999999999999655553      47666654