Citrus Sinensis ID: 016810

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRSVF
Secondary Structure (PSIPRED)
ccccccccccEEccccccccccccccccccccccccccccEEccccccccccccccccccccccccccHHHHcHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHcccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccEEEEEEEEEEcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccHccHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlasTRVRLsfqeippilsldssidlnsvFSRTESLLYTLADAAVSldsasggaastsadgatqknggwfGFISEAMEFVLKILKDgidavhvpySYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRqagvnplagclptlatIPVWIGLYQALSNVaneglltegffwipslsgpttiaarqsgsgiswllpfvdghpplgwhdtaaYLVLPVLLVVSQYasmelmkppqtddpaqkntlLVFKFLPLMIGYfslsvpsglsiYWFTNNVLSTAQQVWLRKlggakpvvtENASEIITAGrakrsvsqpsragdrsvf
Flexible Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlastrvRLSFQeippilsldssidLNSVFSRTESLLYTLADAAVSLDSASGGaastsadgatqkNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMkppqtddpaQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAseiitagrakrsvsqpsragdrsvf
Low Complexity Region (SEG)
MTKTLISSPPFVGTplpspssslsrhglhrlpNRRLASTRVRLSFQEippilsldssidlNSVFSRTESLLYtladaavsldsasggaastsadgatQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYlvlpvllvvSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRSVF
Disordered region (IsUnstruct)
***************************************RVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVS*******************NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASM**************NTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENA**I**********************
Disordered Region (DISOPRED)
******SSPPFVGTPLPSPSSSLSR**LHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN**RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA********************VFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKL************************************
Disordered Region (DISEMBL)
MTKTLISSPPFVGT************GLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLD*************ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT********************
Disordered Region (DISPRO)
*****ISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAK********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRSVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q8LBP4	462	Inner membrane protein AL	yes	no	0.942	0.779	0.763	1e-166
Q9FY06	442	Inner membrane protein PP	N/A	no	0.952	0.823	0.774	1e-165
Q9FYL3	499	ALBINO3-like protein 1, c	no	no	0.793	0.607	0.670	1e-114
Q8LKI3	422	Inner membrane ALBINO3-li	N/A	no	0.636	0.575	0.620	5e-90
Q8S339	495	Inner membrane ALBINO3-li	N/A	no	0.691	0.533	0.574	1e-85
A0LLH3	553	Membrane protein insertas	yes	no	0.573	0.396	0.330	2e-33
B3QYV6	586	Membrane protein insertas	yes	no	0.552	0.360	0.354	7e-31
O66103	622	Membrane protein insertas	yes	no	0.520	0.319	0.359	1e-29
B2IDV5	604	Membrane protein insertas	yes	no	0.617	0.390	0.346	1e-29
Q1QH68	609	Membrane protein insertas	yes	no	0.654	0.410	0.299	2e-29

>sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 287/376 (76%), Positives = 318/376 (84%), Gaps = 16/376 (4%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNT 303
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQTDDPAQKNT
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNT 312

Query: 304 LLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITA 363
           LLVFKFLPLMIGYF+LSVPSGLSIYW TNNVLSTAQQV+LRKLGGAKP + ENAS+II+A
Sbjct: 313 LLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLSTAQQVYLRKLGGAKPNMDENASKIISA 372

Query: 364 GRAKRSVSQPSRAGDR 379
           GRAKRS++QP  AG+R
Sbjct: 373 GRAKRSIAQPDDAGER 388

Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Required for the insertion of LHCB1, LHCB4.1 and LHCB5 proteins into thylakoid membrane, while it is not required for insertion of proteins PsbX, PsbW and PsbY.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/381 (77%), Positives = 324/381 (85%), Gaps = 17/381 (4%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRL--PNRRLASTRVRLSFQEIPPILSLDSSI 58
           M KTLISSP F+GTPLPS         LHR   PNR    T+V+ SF ++PPI S+  S+
Sbjct: 1   MAKTLISSPSFLGTPLPS---------LHRTFSPNRTRLFTKVQFSFHQLPPIQSVSHSV 51

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           DL+ +F+R E LLYTLADA V+        A+ S D A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 52  DLSGIFARAEGLLYTLADATVAA------DAAASTDVAAQKNGGWFGFISDGMEFVLKVL 105

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQ
Sbjct: 106 KDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQ 165

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 166 ERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 225

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PT+IAARQSGSGISWL PFVDGHP LGW+DTAAYLVLPVLL+VSQY SME+MKPPQT+DP
Sbjct: 226 PTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQTNDP 285

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
            QKNTLL+FKFLPLMIGYFSLSVPSGL+IYWFTNNVLSTAQQVWLRKLGGAKP V ENA 
Sbjct: 286 NQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKLGGAKPAVNENAG 345

Query: 359 EIITAGRAKRSVSQPSRAGDR 379
            IITAG+AKRS S+P + G+R
Sbjct: 346 GIITAGQAKRSASKPEKGGER 366

May be required for the insertion of some integral membrane proteins into the chloroplast thylakoid membrane. May play a role in inhibiting senescence.

Pisum sativum (taxid: 3888)

>sp|Q9FYL3|ALB31_ARATH ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3

 Score =  411 bits (1056), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/310 (67%), Positives = 255/310 (82%), Gaps = 7/310 (2%)

Query: 68  ESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
           E+LLYT+ADAAVS        A T+    T ++  WF  I+  ME +LK+LKDG+  VHV
Sbjct: 63  ENLLYTIADAAVSSSETFESVAGTTT--KTTQSNDWFSGIANYMETILKVLKDGLSTVHV 120

Query: 128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
           PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct: 121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query: 188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
           LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct: 181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query: 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVF 307
           GSGISWL PF++GHPPLGW DT AYLVLP+LLV SQY S+++M+  Q++DPA K++  V 
Sbjct: 241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPAMKSSQAVT 300

Query: 308 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT----A 363
           K LPLMIGYF+LSVPSGLS+YW TNN+LSTAQQVWL+K GGAK  V E  + ++T     
Sbjct: 301 KLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPV-EKFTNLVTKEDKT 359

Query: 364 GRAKRSVSQP 373
            + ++S S+P
Sbjct: 360 QQIEKSFSEP 369

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LKI3|ALB32_CHLRE Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1

 Score =  331 bits (849), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 154/248 (62%), Positives = 197/248 (79%), Gaps = 5/248 (2%)

Query: 97  TQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES 156
           T   GG    +++  EFVL+ L +G+++  +PYSYGFAII LTV+VKVATFPLT+KQVES
Sbjct: 67  TLAEGGPIDVLAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVES 126

Query: 157 TLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQA 216
           TL++Q LQP++K +Q +YA + E +QLET+RLY++AGVNPLAGC PTLATIPV+IGLY A
Sbjct: 127 TLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNA 186

Query: 217 LSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLP 276
           LSN A EGLLTEGFFWIPSL GPTTI     G G+ WL+PF +G PP+GW + AAYLV+P
Sbjct: 187 LSNAAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMP 241

Query: 277 VLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS 336
           VLLV SQYAS +++      DP+Q+    + KFLPLMIG+FSL+VPSGL++YWF NN+LS
Sbjct: 242 VLLVASQYASQKIISSQNNQDPSQQQAQAILKFLPLMIGWFSLNVPSGLTLYWFVNNLLS 301

Query: 337 TAQQVWLR 344
           T QQ++L+
Sbjct: 302 TGQQLYLK 309

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.1.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8S339|ALB31_CHLRE Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1

 Score =  317 bits (811), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/275 (57%), Positives = 212/275 (77%), Gaps = 11/275 (4%)

Query: 88  AASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATF 147
           A  ++A  A Q+ GGW   +++A+E VL  L++G+D +HVPYSYG++IILLT+IVK+ T+
Sbjct: 98  AVDSAAGAAPQRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTY 157

Query: 148 PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATI 207
           PLTK+QVES +A+Q L+P+I  I+ R+  ++++IQ ETS LY QAGVNPLAGCLPTLATI
Sbjct: 158 PLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATI 217

Query: 208 PVWIGLYQALSNVANEGLL-TEGFFWIPSLSGPTTIAARQSGSGISWLLPF-VDGHPPLG 265
           P++IGL+ +L+NVAN+GLL T+GF+++PSL+GPTT+A RQSG G SWL P   DG PP+G
Sbjct: 218 PIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIG 277

Query: 266 WHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKN-----TLLVFKFLPLMIGYFSLS 320
           W D AAYL LP+LLV  QYAS  +  PP   DP  +N      LLV  FLPLM+G+FSL+
Sbjct: 278 WEDAAAYLTLPLLLVAVQYASSSVTSPPI--DPKDENANTQRALLV--FLPLMVGWFSLN 333

Query: 321 VPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTE 355
           VP+GLS+Y+  N VLS+A Q++L+KLGGA  V+ E
Sbjct: 334 VPAGLSLYYLANTVLSSAIQIYLKKLGGANVVMNE 368

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.2.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|A0LLH3|YIDC_SYNFM Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=yidC PE=3 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 136/251 (54%), Gaps = 32/251 (12%)

Query: 96  ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVE 155
           A+  + GWF FI++ + +VL             +++G AIILLT+++K+  +PLT+K  +
Sbjct: 332 ASAVDYGWFTFIAKPLVYVLDWF------YRYTHNWGVAIILLTIVIKILFWPLTQKSYQ 385

Query: 156 STLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQ 215
           S   M+ +QPK+  I+++Y G++E++  E   LYR   VNP+ GCLP L  IPV+  LY+
Sbjct: 386 SMQKMKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYR 445

Query: 216 ALSNVANEGLLTEGF-FWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLV 274
            L+      L  E F  WI  L+ P  +        I + +P++ G P           V
Sbjct: 446 MLNGAVE--LRHEPFMLWIDDLTAPDRLP-------IGFDIPYLGGLP-----------V 485

Query: 275 LPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV 334
           L +L+ ++ +   ++   P   DP Q   +++   +P+M   F ++ PSGL +YW  NNV
Sbjct: 486 LTLLMGITMFIQQKMT--PSAGDPRQDQIMMI---MPVMFTVFFVNFPSGLVLYWLVNNV 540

Query: 335 LSTAQQVWLRK 345
           LS AQQ W+ +
Sbjct: 541 LSIAQQYWVNR 551

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|B3QYV6|YIDC_CHLT3 Membrane protein insertase YidC OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=yidC PE=3 SV=1

 Score =  135 bits (339), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 23/234 (9%)

Query: 126 HVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLET 185
           HV  SYG  IIL  + +K+ T+PLT    +S   M  LQP++KAIQ++Y  N E++Q E 
Sbjct: 366 HVD-SYGVIIILFALFIKLVTYPLTMASTKSMKKMAALQPQLKAIQEQYKDNPEKLQAEI 424

Query: 186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAAR 245
           S +YR+AGVNPL GCLPT+  +P+   ++    +     L  EGF W   LS P +I   
Sbjct: 425 SGIYREAGVNPLGGCLPTVIQMPLLFAMFYVFRSSIQ--LRQEGFLWSNDLSVPDSILD- 481

Query: 246 QSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLL 305
                    LPF    P  G H +    V+P+L+ V+ +   +L    QT+D  +    +
Sbjct: 482 ---------LPF--SIPLYGDHVS----VIPILMGVAVFFQQKLTPSTQTNDQMK---FM 523

Query: 306 VFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASE 359
           ++ F  +M+ +F+ ++PSGL +Y+   NV S AQQ ++ +    +PVV ++ S+
Sbjct: 524 MYLFPGMMLIFFN-NMPSGLGLYYLMFNVFSIAQQFYINQTTETEPVVLKDKSK 576

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418)

>sp|O66103|YIDC_TREPA Membrane protein insertase YidC OS=Treponema pallidum (strain Nichols) GN=yidC PE=3 SV=2

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 18/217 (8%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIIL+T+ +KV  FPLTK+   +   MQ LQP ++ IQ+RY GN ++I  E ++LY
Sbjct: 416 NWGVAIILVTIAIKVLFFPLTKRSFIAMQKMQELQPHMQRIQERYKGNTQKIHEEMAKLY 475

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           R+A  NPL+GCLPTL  +P+   +Y+  +N           +WIP LS   ++       
Sbjct: 476 REAQYNPLSGCLPTLVQMPIIFAMYRLFNNYFEFRGAMFIPYWIPDLSLADSV------- 528

Query: 250 GISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKF 309
              W LPF    P   W       +LPVL VVSQ    +L + P T+   QK ++ +  +
Sbjct: 529 ---WTLPF--ALPVTQWTQMR---MLPVLYVVSQIMFSKLTQVPHTEQ--QKTSMTIMTY 578

Query: 310 -LPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 345
            +PL   +F    PSGL +YW   N ++  QQ+ +++
Sbjct: 579 VMPLFFFFFFYDAPSGLLVYWTAMNGVTLVQQLVMKR 615

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Treponema pallidum (strain Nichols) (taxid: 243276)

>sp|B2IDV5|YIDC_BEII9 Membrane protein insertase YidC OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=yidC PE=3 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 136/257 (52%), Gaps = 21/257 (8%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           G+F FI+  M ++L  +        V  ++G AI+ +TV+VK   FPL  +   S   M+
Sbjct: 356 GYFYFITRPMFWILHTI------YQVVGNFGVAILCITVLVKAVFFPLANRSYLSMAKMK 409

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            +QP++ A+++RYA ++ + Q E   LY++  +NP+AGCLP L  IPV+  LY+ L  V 
Sbjct: 410 AIQPQMLALRERYADDKVKQQQELMELYKREKINPVAGCLPMLIQIPVFFALYKVLF-VT 468

Query: 222 NEGLLTEGFFWIPSLSG--PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 279
            E      F WI  LS   PT I        +  LLPF   H P+  H   A  + P+++
Sbjct: 469 IEMRQAPFFGWIRDLSAPDPTNIF------NLFGLLPFDPTHLPMIGH-FLAIGIWPLIM 521

Query: 280 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 339
            VS +  M++   P+  DP QK    +F ++P++  +   + PSGL IYW  NN LS  Q
Sbjct: 522 GVSMFFQMKMN--PEPADPVQKQ---MFSWMPVIFTFMLGTFPSGLVIYWTWNNTLSVLQ 576

Query: 340 QVWLRKLGGAKPVVTEN 356
           Q  + K  G K  + +N
Sbjct: 577 QSLIMKRAGVKVELWDN 593

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963)

>sp|Q1QH68|YIDC_NITHX Membrane protein insertase YidC OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=yidC PE=3 SV=1

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 140/277 (50%), Gaps = 27/277 (9%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GWF FI++ M   L          HV  ++G AI+ +TV++K   FPL  +   S   M+
Sbjct: 356 GWFYFITKPMFLALDFF------FHVFGNFGIAILFVTVLIKAIFFPLANRSYASMAKMK 409

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            +QP+I A+++R+  ++ ++Q E   +Y++  +NP++GCLP +  IPV+  LY+ L  V 
Sbjct: 410 AVQPQIAALKERFPDDKMKLQQEMMEIYKKEKINPISGCLPMVLQIPVFFSLYKVLF-VT 468

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVL---PVL 278
            E      F WI  LS P           +  LLP+     PL       YL +   P++
Sbjct: 469 IEMRHAPFFAWIKDLSAPDPTHIFN----LFGLLPYDPSAVPL----LGPYLAIGAWPII 520

Query: 279 LVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTA 338
           + ++ +  M+L   P   DP QK   L+F ++P++  +   + P+GL IYW  NN LS  
Sbjct: 521 MGITMWFQMKLN--PTPPDPTQK---LIFDWMPVIFTFMLAAFPAGLVIYWAWNNTLSVI 575

Query: 339 QQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSR 375
           QQ ++ +  G K  +  N   +      ++S  +P++
Sbjct: 576 QQSYIMRRNGVKVELLNNVKSVFR----RKSSDKPAK 608

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
156530446	452	chloroplast PPF-1 [Citrus trifoliata]	0.989	0.836	0.989	0.0
225434998	455	PREDICTED: inner membrane protein PPF-1,	0.984	0.826	0.845	1e-180
449464930	453	PREDICTED: inner membrane protein PPF-1,	0.979	0.825	0.818	1e-178
224054791	451	inner membrane protein [Populus trichoca	0.973	0.824	0.816	1e-173
255581095	449	Inner membrane protein PPF-1, chloroplas	0.965	0.821	0.824	1e-169
356542455	450	PREDICTED: inner membrane protein PPF-1,	0.971	0.824	0.792	1e-165
297826255	458	hypothetical protein ARALYDRAFT_901831 [	0.939	0.783	0.780	1e-165
224104461	446	inner membrane protein [Populus trichoca	0.965	0.827	0.824	1e-164
15226968	462	inner membrane protein ALBINO3 [Arabidop	0.942	0.779	0.763	1e-164
38372402	442	RecName: Full=Inner membrane protein PPF	0.952	0.823	0.774	1e-163

>gi|156530446|gb|ABU75304.1| chloroplast PPF-1 [Citrus trifoliata]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/379 (98%), Positives = 376/379 (99%), Gaps = 1/379 (0%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60
           M KTLISSPPFVGTPLPSPSSSLSRHGLH LPNRRLASTRVRLSFQEIPPILSLDSSIDL
Sbjct: 1   MAKTLISSPPFVGTPLPSPSSSLSRHGLHPLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60

Query: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120
           NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD
Sbjct: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120

Query: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180
           GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER
Sbjct: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180

Query: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240
           IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT
Sbjct: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240

Query: 241 TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQ 300
           TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA ME+MKPPQTDDPAQ
Sbjct: 241 TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA-MEIMKPPQTDDPAQ 299

Query: 301 KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEI 360
           KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEI
Sbjct: 300 KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEI 359

Query: 361 ITAGRAKRSVSQPSRAGDR 379
           ITAGRAKRSVSQPSRAGDR
Sbjct: 360 ITAGRAKRSVSQPSRAGDR 378

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434998|ref|XP_002284077.1| PREDICTED: inner membrane protein PPF-1, chloroplastic isoform 1 [Vitis vinifera]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 322/381 (84%), Positives = 344/381 (90%), Gaps = 5/381 (1%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGL-HRLPNRRLASTRVRLSFQEIPPILSLDSS-I 58
           M +TLISSPPF+G PLPS SS   RHGL H LP+RRL STRV+ S  ++PPI SLDSS I
Sbjct: 1   MARTLISSPPFIGKPLPSLSS---RHGLLHSLPHRRLISTRVKFSLHDLPPIHSLDSSSI 57

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D   + SR ESLLYTLADAAVS D A+ G AS +AD A QKNGGWFGFISE ME VLK+L
Sbjct: 58  DFAGIVSRAESLLYTLADAAVSADPAAAGPASGTADAAVQKNGGWFGFISEGMEVVLKVL 117

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           +DG+ AVHVPY+YGFAIILLTVIVK+AT+PLTKKQVESTLAMQNLQPKIKAIQ+RY GNQ
Sbjct: 118 EDGLTAVHVPYAYGFAIILLTVIVKIATYPLTKKQVESTLAMQNLQPKIKAIQERYKGNQ 177

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 178 ERIQLETSRLYKQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 237

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSGSGISWL+PFVDGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 238 PTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 297

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
           +QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV E+AS
Sbjct: 298 SQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNEDAS 357

Query: 359 EIITAGRAKRSVSQPSRAGDR 379
            IITAGRAKRS SQP+RAGDR
Sbjct: 358 GIITAGRAKRSASQPARAGDR 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464930|ref|XP_004150182.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus] gi|449524424|ref|XP_004169223.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/381 (81%), Positives = 336/381 (88%), Gaps = 7/381 (1%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRH-GLHRLPNRRLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISS PFVG+ LPS    LSRH  LH LP+RR  +TRV  SF ++PP+ +  SS+D
Sbjct: 1   MAKTLISSSPFVGSSLPS----LSRHLPLHTLPHRRHLTTRVNFSFHQLPPVHTFHSSLD 56

Query: 60  LNSVFSRTESLLYTLADAAVSLDSA-SGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
             ++ SRTE LLYTLADAAV++DS  S  A STS D A QKNGGWFGFIS+AME VLK+L
Sbjct: 57  FQAIVSRTEGLLYTLADAAVAVDSTLSAAATSTSPDTAVQKNGGWFGFISDAMEVVLKVL 116

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           K  ++AVH+PYSYGFAIILLT+IVKVATFPLTK+QVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 117 KGSLEAVHIPYSYGFAIILLTIIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQ 176

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 177 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 236

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSG+GISWLLPFVDGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 237 PTTIAARQSGAGISWLLPFVDGHPPLGWSDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 296

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
           AQKNTLL+FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV ENA 
Sbjct: 297 AQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNENAP 356

Query: 359 EIITAGRAKRSVSQPSRAGDR 379
            IITAGRAKR+  +  R GDR
Sbjct: 357 GIITAGRAKRT-PESERTGDR 376

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054791|ref|XP_002298365.1| inner membrane protein [Populus trichocarpa] gi|222845623|gb|EEE83170.1| inner membrane protein [Populus trichocarpa]

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 311/381 (81%), Positives = 336/381 (88%), Gaps = 9/381 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQE-IPPILS-LDSSI 58
           M +TL+SSPPF+GTPLPS    LSRH L    NRR  STR++LS  + IPPI   L SS+
Sbjct: 1   MARTLLSSPPFIGTPLPS----LSRHAL--TTNRRFISTRIKLSLHDNIPPIHHHLHSSV 54

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D N++ SR E  LYTLADAAV++DSA+   +S +AD A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 55  DFNTIISRAEGFLYTLADAAVAVDSAASTTSSDTADAA-QKNGGWFGFISDGMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPY+YGFAIILLT+ VKVAT PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 114 KDGLSSVHVPYAYGFAIILLTIAVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSGSGISWL PFVDGHPPLGWHDTAAYLVLPVLL+ SQY SME+MKPPQTDDP
Sbjct: 234 PTTIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLLIASQYVSMEIMKPPQTDDP 293

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
            QKNTLLVFKFLP+MIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV ENAS
Sbjct: 294 TQKNTLLVFKFLPIMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNENAS 353

Query: 359 EIITAGRAKRSVSQPSRAGDR 379
            IITAGRAKRS SQP + GDR
Sbjct: 354 GIITAGRAKRSASQPGQPGDR 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581095|ref|XP_002531362.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis] gi|223529022|gb|EEF31010.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/382 (82%), Positives = 336/382 (87%), Gaps = 13/382 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHR--LPNRR-LASTRVRLSFQEIPPILSLDSS 57
           M KTLISSP F+G PLPS SS   RHGL    LP+RR +++T+V+ S  EIPPI  LDS 
Sbjct: 1   MAKTLISSPSFIGAPLPSSSS---RHGLQHSLLPSRRFISTTKVKFSLHEIPPITHLDS- 56

Query: 58  IDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKI 117
           +D NS+ SR ESLLYTLADAAV++       +S + D A QKN GWFGFISE MEFVLK+
Sbjct: 57  VDFNSIVSRAESLLYTLADAAVAV------DSSAATDTAVQKNNGWFGFISEGMEFVLKV 110

Query: 118 LKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177
           LKDG+ +VHVPYSYGFAIILLTVIVK+AT PLTK+QVESTLAMQNLQPKIKAIQQRYAGN
Sbjct: 111 LKDGLSSVHVPYSYGFAIILLTVIVKIATLPLTKQQVESTLAMQNLQPKIKAIQQRYAGN 170

Query: 178 QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLS 237
           QERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL 
Sbjct: 171 QERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLG 230

Query: 238 GPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDD 297
           GPTTIAARQSGSGISWL PFVDGHPPLGW+DTAAYLVLPVLLVVSQY SME+MKPPQTDD
Sbjct: 231 GPTTIAARQSGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLLVVSQYVSMEIMKPPQTDD 290

Query: 298 PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENA 357
           PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF NNVLSTAQQVWLRKLGGAKPVV +NA
Sbjct: 291 PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFVNNVLSTAQQVWLRKLGGAKPVVDQNA 350

Query: 358 SEIITAGRAKRSVSQPSRAGDR 379
           S IITAGRAKRS SQP R GDR
Sbjct: 351 SGIITAGRAKRSASQPQRGGDR 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542455|ref|XP_003539682.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 302/381 (79%), Positives = 324/381 (85%), Gaps = 10/381 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNR-RLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISSP F+GTPLPS    L RH    LP+R R  +T+V +S  EIPPI SL  SID
Sbjct: 1   MAKTLISSPSFIGTPLPS----LPRH---HLPHRTRFVTTKVHVSLHEIPPIQSLSHSID 53

Query: 60  LNSVFSRTESLLYTLADAAVSLDSASGGAASTSA-DGATQKNGGWFGFISEAMEFVLKIL 118
              + +R E LLYTLADAAV+ D A     + S  D A QK+GGWFGFISEAMEFVLK+L
Sbjct: 54  FAGIVTRAEGLLYTLADAAVAADPAVAADTAASTTDAAVQKSGGWFGFISEAMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ RYAGNQ
Sbjct: 114 KDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSG+GISWL PFVDGHPPLGW DTAAYLVLP+LLVVSQY SME+MKPPQT DP
Sbjct: 234 PTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQT-DP 292

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
           +QKN LL+ KFLPLMIGYFSLSVPSGL+IYWF NNVLSTAQQVWLRKLGGAKPVV ENA 
Sbjct: 293 SQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENAG 352

Query: 359 EIITAGRAKRSVSQPSRAGDR 379
            IITAGRAKRS SQ +R G+R
Sbjct: 353 GIITAGRAKRSDSQLARNGER 373

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826255|ref|XP_002881010.1| hypothetical protein ARALYDRAFT_901831 [Arabidopsis lyrata subsp. lyrata] gi|297326849|gb|EFH57269.1| hypothetical protein ARALYDRAFT_901831 [Arabidopsis lyrata subsp. lyrata]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/373 (78%), Positives = 319/373 (85%), Gaps = 14/373 (3%)

Query: 16  LPSPSSSLSRHGL------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSVFSRT 67
           L  PSSSL   G       +R  N +L   ST VR S  EIPP   LDSS+D+ ++ +R 
Sbjct: 17  LIKPSSSLRHSGGGAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAILTRA 76

Query: 68  ESLLYTLADAAVSLDSASGGAASTSADG-ATQKNGGWFGFISEAMEFVLKILKDGIDAVH 126
           ESLLYT+ADAAV      G  +  S D  A QK+GGWFGFIS+ ME VLKILKDG+ AVH
Sbjct: 77  ESLLYTIADAAVV-----GADSVVSTDSSAVQKSGGWFGFISDGMELVLKILKDGLSAVH 131

Query: 127 VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETS 186
           VPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETS
Sbjct: 132 VPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETS 191

Query: 187 RLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQ 246
           RLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL GPTTIAARQ
Sbjct: 192 RLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQ 251

Query: 247 SGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLV 306
           SGSGISWL PFVDGHPPLGW+DTAAYLVLPVLL+ SQY SME+MKPPQTDDPAQKNTLLV
Sbjct: 252 SGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNTLLV 311

Query: 307 FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRA 366
           FKFLPLMIGYF+LSVPSGLSIYWFTNNVLSTAQQV+LRKLGGAKP + ENAS+II+AGRA
Sbjct: 312 FKFLPLMIGYFALSVPSGLSIYWFTNNVLSTAQQVYLRKLGGAKPNMDENASKIISAGRA 371

Query: 367 KRSVSQPSRAGDR 379
           KRS++QP  AG+R
Sbjct: 372 KRSIAQPDDAGER 384

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104461|ref|XP_002313443.1| inner membrane protein [Populus trichocarpa] gi|222849851|gb|EEE87398.1| inner membrane protein [Populus trichocarpa]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 314/381 (82%), Positives = 336/381 (88%), Gaps = 12/381 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQE-IPPILS-LDSSI 58
           M +TL+SSPPF+ T LPS    LSRH L    NRR  STR++LS  + IPPI   LDSSI
Sbjct: 1   MARTLLSSPPFIATSLPS----LSRHTL--TTNRRFISTRIKLSLHDNIPPIHHHLDSSI 54

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D NS+ SR E  LYTLADAAV++DSA   A++TS D A QK+GGWFGFIS+ MEFVLK+L
Sbjct: 55  DFNSIISRAEGFLYTLADAAVAVDSA---ASTTSTDTA-QKSGGWFGFISDGMEFVLKVL 110

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTV VKVAT PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 111 KDGLSAVHVPYAYGFAIILLTVFVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 170

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPSL G
Sbjct: 171 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPSLGG 230

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSGSGISWL PFVDGHPPLGW+DTAAYLVLPVLLVVSQY SME+MKPPQTDDP
Sbjct: 231 PTTIAARQSGSGISWLFPFVDGHPPLGWNDTAAYLVLPVLLVVSQYVSMEIMKPPQTDDP 290

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
            QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLR+LGGAKPVV ENAS
Sbjct: 291 TQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRQLGGAKPVVNENAS 350

Query: 359 EIITAGRAKRSVSQPSRAGDR 379
            IITAGRAKRS +QP + GDR
Sbjct: 351 GIITAGRAKRSAAQPGQPGDR 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226968|ref|NP_180446.1| inner membrane protein ALBINO3 [Arabidopsis thaliana] gi|38372238|sp|Q8LBP4.2|ALB3_ARATH RecName: Full=Inner membrane protein ALBINO3, chloroplastic; Flags: Precursor gi|2209332|gb|AAB61458.1| chloroplast membrane protein ALBINO3 [Arabidopsis thaliana] gi|3927828|gb|AAC79585.1| chloroplast membrane protein (ALBINO3) [Arabidopsis thaliana] gi|27311661|gb|AAO00796.1| chloroplast membrane protein (ALBINO3) [Arabidopsis thaliana] gi|30387561|gb|AAP31946.1| At2g28800 [Arabidopsis thaliana] gi|330253078|gb|AEC08172.1| inner membrane protein ALBINO3 [Arabidopsis thaliana]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 287/376 (76%), Positives = 318/376 (84%), Gaps = 16/376 (4%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNT 303
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQTDDPAQKNT
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNT 312

Query: 304 LLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITA 363
           LLVFKFLPLMIGYF+LSVPSGLSIYW TNNVLSTAQQV+LRKLGGAKP + ENAS+II+A
Sbjct: 313 LLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLSTAQQVYLRKLGGAKPNMDENASKIISA 372

Query: 364 GRAKRSVSQPSRAGDR 379
           GRAKRS++QP  AG+R
Sbjct: 373 GRAKRSIAQPDDAGER 388

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38372402|sp|Q9FY06.2|PPF1_PEA RecName: Full=Inner membrane protein PPF-1, chloroplastic; AltName: Full=Post-floral-specific protein 1; Flags: Precursor gi|2231046|emb|CAA73179.1| PPF-1 protein [Pisum sativum]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 295/381 (77%), Positives = 324/381 (85%), Gaps = 17/381 (4%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRL--PNRRLASTRVRLSFQEIPPILSLDSSI 58
           M KTLISSP F+GTPLPS         LHR   PNR    T+V+ SF ++PPI S+  S+
Sbjct: 1   MAKTLISSPSFLGTPLPS---------LHRTFSPNRTRLFTKVQFSFHQLPPIQSVSHSV 51

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           DL+ +F+R E LLYTLADA V+        A+ S D A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 52  DLSGIFARAEGLLYTLADATVAA------DAAASTDVAAQKNGGWFGFISDGMEFVLKVL 105

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQ
Sbjct: 106 KDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQ 165

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 166 ERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 225

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PT+IAARQSGSGISWL PFVDGHP LGW+DTAAYLVLPVLL+VSQY SME+MKPPQT+DP
Sbjct: 226 PTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQTNDP 285

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
            QKNTLL+FKFLPLMIGYFSLSVPSGL+IYWFTNNVLSTAQQVWLRKLGGAKP V ENA 
Sbjct: 286 NQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKLGGAKPAVNENAG 345

Query: 359 EIITAGRAKRSVSQPSRAGDR 379
            IITAG+AKRS S+P + G+R
Sbjct: 346 GIITAGQAKRSASKPEKGGER 366

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:2053230	462	ALB3 "ALBINO 3" [Arabidopsis t	0.897	0.742	0.733	1e-132
TAIR|locus:2809836	499	ALB4 "AT1G24490" [Arabidopsis	0.793	0.607	0.622	2.1e-100
UNIPROTKB|Q3AG58	223	CHY_0004 "Sporulation associat	0.335	0.573	0.379	9.9e-31
TIGR_CMR|CHY_0004	223	CHY_0004 "sporulation associat	0.335	0.573	0.379	9.9e-31
UNIPROTKB|Q5HUK1	530	yidC "Membrane protein inserta	0.337	0.243	0.375	1.4e-29
TIGR_CMR|CJE_1038	530	CJE_1038 "inner membrane prote	0.337	0.243	0.375	1.4e-29
UNIPROTKB|Q9KVY4	541	yidC "Membrane protein inserta	0.335	0.236	0.386	8.9e-29
TIGR_CMR|VC_0004	541	VC_0004 "inner membrane protei	0.335	0.236	0.386	8.9e-29
UNIPROTKB|Q71VQ8	287	yidC1 "Membrane protein insert	0.280	0.372	0.412	5.8e-27
UNIPROTKB|Q81XH4	260	yidC1 "Membrane protein insert	0.329	0.484	0.321	2.5e-23

TAIR|locus:2053230 ALB3 "ALBINO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
 Identities = 256/349 (73%), Positives = 279/349 (79%)

Query:    33 NRRL--ASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXX 90
             N +L   ST VR S  E              ++F+R ESLLY                  
Sbjct:    44 NNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDS 103

Query:    91 XXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLT 150
                    QK+GGWFGFIS+AME VLKILKDG+ AVHVPY+YGFAIILLT+IVK AT+PLT
Sbjct:   104 SAV----QKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLT 159

Query:   151 KKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVW 210
             K+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVW
Sbjct:   160 KQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVW 219

Query:   211 IGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTA 270
             IGLYQALSNVANEGL TEGFFWIPSL GPT+IAARQSGSGISWL PFVDGHPPLGW+DT 
Sbjct:   220 IGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTV 279

Query:   271 AYXXXXXXXXXSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF 330
             AY         SQY SME+MKPPQTDDPAQKNTLLVFKFLPLMIGYF+LSVPSGLSIYW 
Sbjct:   280 AYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWL 339

Query:   331 TNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDR 379
             TNNVLSTAQQV+LRKLGGAKP + ENAS+II+AGRAKRS++QP  AG+R
Sbjct:   340 TNNVLSTAQQVYLRKLGGAKPNMDENASKIISAGRAKRSIAQPDDAGER 388

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2809836 ALB4 "AT1G24490" [Arabidopsis thaliana (taxid:3702)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 193/310 (62%), Positives = 235/310 (75%)

Query:    68 ESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
             E+LLY                         Q N  WF  I+  ME +LK+LKDG+  VHV
Sbjct:    63 ENLLYTIADAAVSSSETFESVAGTTTKTT-QSND-WFSGIANYMETILKVLKDGLSTVHV 120

Query:   128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
             PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct:   121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query:   188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
             LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct:   181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query:   248 GSGISWLLPFVDGHPPLGWHDTAAYXXXXXXXXXSQYASMELMKPPQTDDPAQKNTLLVF 307
             GSGISWL PF++GHPPLGW DT AY         SQY S+++M+  Q++DPA K++  V 
Sbjct:   241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPAMKSSQAVT 300

Query:   308 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT----A 363
             K LPLMIGYF+LSVPSGLS+YW TNN+LSTAQQVWL+K GGAK  V E  + ++T     
Sbjct:   301 KLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPV-EKFTNLVTKEDKT 359

Query:   364 GRAKRSVSQP 373
              + ++S S+P
Sbjct:   360 QQIEKSFSEP 369

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q3AG58 CHY_0004 "Sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CHY_0004 CHY_0004 "sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|Q5HUK1 yidC "Membrane protein insertase YidC" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1038 CJE_1038 "inner membrane protein, 60 kDa" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q9KVY4 yidC "Membrane protein insertase YidC" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 233 (87.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0004 VC_0004 "inner membrane protein, 60 kDa" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 233 (87.1 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q71VQ8 yidC1 "Membrane protein insertase YidC 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 241 (89.9 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 47/114 (41%), Positives = 74/114 (64%)

Query:   130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN----QERIQLET 185
             SY   II++T+++++   PL  KQ++S  AM NLQPKIK +Q++Y+      ++++Q ET
Sbjct:    64 SYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIKELQEKYSSKDNETKQKLQQET 123

Query:   186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP 239
              RLY++  VNP+ GCLP L  +P+ +G YQA+S  A   + T+ F W+  L  P
Sbjct:   124 MRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE--IKTDSFLWM-QLGNP 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81XH4 yidC1 "Membrane protein insertase YidC 1" [Bacillus anthracis (taxid:1392)]

 Score = 199 (75.1 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
 Identities = 45/140 (32%), Positives = 76/140 (54%)

Query:   101 GGWFGFISEAMEFVLKILKDGIDAVHVP-YSYGFAIILLTVIVKVATFPLTKKQVESTLA 159
             G W  +    + F+++ +     A H+P  S+G AII++T++++ A  PL   Q  S   
Sbjct:    35 GIWDHYFVYPISFMIQFV-----AHHIPGASFGIAIIIMTLVIRSAMIPLAVSQYRSQAK 89

Query:   160 MQNLQPKIKAIQQRYAG------NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGL 213
             M+ +QP+++ ++Q+Y         Q++ Q E S L +  G NPLAGC P L  +P++  L
Sbjct:    90 MKKMQPELQKLKQKYGDVSKDLEKQKQYQKEMSELMKSGGWNPLAGCWPLLIQMPIFSAL 149

Query:   214 YQALSNVANEGLLTEGFFWI 233
             Y A+S    E + T  F W+
Sbjct:   150 YYAISRT--EEIRTSTFLWV 167

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBP4	ALB3_ARATH	No assigned EC number	0.7632	0.9424	0.7792	yes	no
Q9FY06	PPF1_PEA	No assigned EC number	0.7742	0.9528	0.8235	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024358001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (455 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034124001	RecName- Full=50S ribosomal protein L34; (147 aa)	•			•					0.724
	GSVIVG00015270001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (752 aa)	•						•		0.651
	GSVIVG00016972001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)				•	•		•		0.591
	GSVIVG00026227001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (367 aa)					•		•		0.546
	GSVIVG00036245001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (370 aa)				•	•		•		0.514

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	4e-70
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	1e-67
PRK01318	521	PRK01318, PRK01318, membrane protein insertase; Pr	2e-57
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	2e-47
PRK00145	223	PRK00145, PRK00145, putative inner membrane protei	5e-42
PRK01001	795	PRK01001, PRK01001, putative inner membrane protei	1e-32
PRK01622	256	PRK01622, PRK01622, OxaA-like protein precursor; V	3e-32
PRK01315	329	PRK01315, PRK01315, putative inner membrane protei	7e-31
PRK02944	255	PRK02944, PRK02944, OxaA-like protein precursor; V	1e-29
PRK03449	304	PRK03449, PRK03449, putative inner membrane protei	1e-25
PRK02654	375	PRK02654, PRK02654, putative inner membrane protei	5e-18
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	2e-15
PRK02463	307	PRK02463, PRK02463, OxaA-like protein precursor; P	6e-14
PRK02201	357	PRK02201, PRK02201, putative inner membrane protei	4e-13

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score =  218 bits (557), Expect = 4e-70
 Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 31/218 (14%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT++V++   PLT KQ +S   MQ LQP+IK IQ++Y  + +++Q E  +LY
Sbjct: 2   NWGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDPQKLQQEMMKLY 61

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSG 248
           ++ GVNPLAGCLP L  +P++I LY+AL N+A    L T GF WI  LS P         
Sbjct: 62  KEHGVNPLAGCLPMLIQLPIFIALYRALRNMAELRSLETAGFLWIKDLSAPDP------- 114

Query: 249 SGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTL-LVF 307
                                  Y +LP+L  ++ +   +L       D  Q   + ++ 
Sbjct: 115 ----------------------PYFILPILAGLTMFLQQKLSPSQDPPDLQQSAQMKIMM 152

Query: 308 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 345
             +PL+  +F L+ P+GL +YW  +N+ S  QQ+ +RK
Sbjct: 153 YIMPLIFLFFFLNFPAGLVLYWIVSNLFSLVQQLIIRK 190

Length = 193

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score =  211 bits (540), Expect = 1e-67
 Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 35/216 (16%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT+IV++   PLT KQ +S   MQ LQPK+K IQ++Y  + +++Q E  +LY
Sbjct: 1   NWGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLY 60

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           ++ GVNPL GCLP L  +P++I LYQ L       L    F WI  LS P          
Sbjct: 61  KEEGVNPLGGCLPLLIQMPIFIALYQVLRRS--IELRHAPFLWIQDLSAP---------- 108

Query: 250 GISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKF 309
                                 Y +LP+L+ V+ +   +L      D   QK  +     
Sbjct: 109 --------------------DPYYILPILMGVTMFLQQKLSPSGPPDPAQQKIMM---YI 145

Query: 310 LPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 345
           +P+M  +F LS P+GL +YW  +N+ +  QQ+ + +
Sbjct: 146 MPVMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional

 Score =  195 bits (498), Expect = 2e-57
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 55/267 (20%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GW  FI++ + ++L  L   +       ++G+AIILLT+IVK+  FPLT K   S   M+
Sbjct: 300 GWLWFITKPLFWLLDFLHSFVG------NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMK 353

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            LQPK++ ++++Y  + +++Q E   LY++  VNPL GCLP L  IP++  LY+ L    
Sbjct: 354 VLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVL---- 409

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW-HDTAAY-------- 272
                              +I  R +        PF      +GW HD +A         
Sbjct: 410 -----------------LVSIELRHA--------PF------IGWIHDLSAPDPYFILHI 438

Query: 273 LVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTN 332
            +LP+L+ ++ +   +L   P   DP Q     + KF+PL+  +F LS P+GL +YW  N
Sbjct: 439 GLLPILMGITMFLQQKLN--PTPTDPMQAK---IMKFMPLIFTFFFLSFPAGLVLYWIVN 493

Query: 333 NVLSTAQQVWLRKLGGAKPVVTENASE 359
           N+L+  QQ  + +    K ++  N  +
Sbjct: 494 NLLTIIQQYLINRRLEKKKLLAANKKK 520

Length = 521

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score =  163 bits (415), Expect = 2e-47
 Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 36/245 (14%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GWF  I   +  +L  +           ++G +IILLT+IV++  FPL++K   S   MQ
Sbjct: 86  GWFWNILAPLFPLLLFID-----SFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQ 140

Query: 162 NLQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV 220
            LQPKIK IQ++Y G  +++ Q E  +LY++  VNPLAGCLP L  +P++I LY  L + 
Sbjct: 141 ELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRST 200

Query: 221 ANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLV 280
                      WI  LS P                       P         L+LP+L  
Sbjct: 201 VELR-GAPFLGWITDLSLPD----------------------PDYI------LLLPILAG 231

Query: 281 VSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQ 340
           V+ +   +L     +     +   +    +P++  +F  + P+GL +YW  +N+ S  QQ
Sbjct: 232 VTMFLQQKLSPRNLSTPQDPQQKKM-MYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQ 290

Query: 341 VWLRK 345
             L K
Sbjct: 291 YILNK 295

Length = 314

>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional

 Score =  146 bits (370), Expect = 5e-42
 Identities = 72/256 (28%), Positives = 119/256 (46%), Gaps = 36/256 (14%)

Query: 104 FGFISEAMEFVLKILKDGIDAV--HVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             +++ A     K +   + +V  +  +SYG AIIL+T+I+++   PL  KQ +S+L M 
Sbjct: 2   MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMN 61

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            +QP+IK +Q +Y  + +++Q E  +LY++ GVNPL GCLP L   P+ I LY   +N+ 
Sbjct: 62  EIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNL- 120

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVV 281
             G+    F WI  L+ P                                  +LP+L   
Sbjct: 121 -TGINGVSFLWIKDLAKP------------------------------DITWILPILSGA 149

Query: 282 SQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV 341
           + Y S  LM    +    Q  T+ +   + + +G  S    S L +YW   N++   Q  
Sbjct: 150 TTYLSGYLMTKADSSQAGQMKTMNI--GMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY 207

Query: 342 WLRKLGGAKPVVTENA 357
           +++KL   K V  + A
Sbjct: 208 FIKKLELKKKVEAKAA 223

Length = 223

>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional

 Score =  129 bits (326), Expect = 1e-32
 Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 52/283 (18%)

Query: 102 GWFGFISE---AMEFVL-KILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVEST 157
           G+F FI+E   A+ F++ K  K       +  S+G +IILLTV +K+  +PL    + S 
Sbjct: 549 GFFSFITEPFAALLFIIMKFFK------FLTGSWGISIILLTVFLKLLLYPLNAWSIRSM 602

Query: 158 LAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             MQ L P I+ IQQ+Y    +R Q+E   LY+   VNP+ GCLP L  +P  I ++  L
Sbjct: 603 RRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLL 662

Query: 218 SNVANEGLLTEGFF---WIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLV 274
               +  LL    F   WI +L+ P  +         SW  P         W     + +
Sbjct: 663 K---SSFLLRGASFIPGWIDNLTAPDVL--------FSWETPI--------WFIGNEFHL 703

Query: 275 LPVLLVVSQYASMELM----KPPQTDDPAQKNTL-----LVFKFLPLMIGYFSLSVPSGL 325
           LP+LL V  +A  ++     K P TD   Q+  +     L+F F   M   F    PSGL
Sbjct: 704 LPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTF---MFYNF----PSGL 756

Query: 326 SIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR 368
           +IYW ++ +L   QQ    K+  +K +     +E++   +  R
Sbjct: 757 NIYWLSSMLLGVIQQWVTNKILDSKHL----KNEVVPNKKKHR 795

Length = 795

>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated

 Score =  121 bits (305), Expect = 3e-32
 Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 52/272 (19%)

Query: 85  SGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKV 144
           SG + +   D  +  +G +  +      F+++ +     A H+  SYG AII++T+I++ 
Sbjct: 21  SGCSNAAPIDAHS--DGFFDHYFVYPFSFLIQFV-----AHHIGGSYGIAIIIVTLIIRS 73

Query: 145 ATFPLTKKQVESTLAMQN----LQPKIKAIQQRY-----AGNQERIQLETSRLYRQAGVN 195
              PL   Q +S   MQ     ++P++  IQ +         Q+  Q E   LY+   +N
Sbjct: 74  LMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNIN 133

Query: 196 PLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWL 254
           PLA GCLP L  +P+    Y A+     E + +  F W                      
Sbjct: 134 PLAMGCLPLLIQMPILSAFYYAIR--RTEEIASHSFLW---------------------- 169

Query: 255 LPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMI 314
             F  GH            +LP++  ++ +  M++ +   T     +   +    +P MI
Sbjct: 170 --FNLGHAD---------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMI 218

Query: 315 GYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKL 346
            + S + PS L +YW T  +    Q + LRK+
Sbjct: 219 LFMSFAAPSALVLYWITGGLFLMGQTIVLRKV 250

Length = 256

>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional

 Score =  119 bits (301), Expect = 7e-31
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 36/229 (15%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +I+ L ++++    PL  KQ++S   MQ +QPK+K IQ++Y G++ER+  E  +LY
Sbjct: 41  TWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRERMSQEMMKLY 100

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE----GLLTEG---------FFWIPSL 236
           ++ G NPL+ CLP L  +P++  LY+ L + A+     G +             F  P L
Sbjct: 101 KETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGAP-L 159

Query: 237 SGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQ-YASMELMK---P 292
           +  T + A  +G+    ++                  VL +L+  SQ    ++LM    P
Sbjct: 160 AA-TFLQALNAGNTAVQVVA----------------AVLIILMSASQFITQLQLMTKNMP 202

Query: 293 PQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQ 340
           P+    P  +   ++    PLM     ++ P G+  YW T+NV +  QQ
Sbjct: 203 PEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQ 251

Length = 329

>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated

 Score =  114 bits (287), Expect = 1e-29
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 48/233 (20%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRY----AGNQERIQLET 185
           +YG AII++T+++++   PL  KQ +ST AMQ LQP+++ ++++Y       Q+++Q E 
Sbjct: 58  NYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEM 117

Query: 186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAAR 245
            +L+++ GVNPLAGCLP    +P+ I  Y A+   +        F W             
Sbjct: 118 MQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSEIS--KHSFLW------------- 162

Query: 246 QSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL-MKPPQTDDPAQKNTL 304
                      F  G           Y +LP++  ++ +   +L M      +P     L
Sbjct: 163 -----------FDLGQAD-------PYYILPIVAGITTFIQQKLMMAGTAGQNPQMAMML 204

Query: 305 LVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ-------QVWLRKLGGAK 350
            +   +P+MI  F+++ P+ LS+YW   N+   AQ       ++   K GG+K
Sbjct: 205 WL---MPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAGGSK 254

Length = 255

>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional

 Score =  104 bits (262), Expect = 1e-25
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 34/242 (14%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +++ L   ++   +    +Q+ +T  MQ LQP+IKA+Q++Y  +++++ LE  +L 
Sbjct: 31  AWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKMALEMQKLQ 90

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALS--NVANEGLLTEGFFWIPSLSGPTTI----- 242
           ++ G NP+ GCLP LA IPV++GL+  L   N    G    G     + + P  +     
Sbjct: 91  KEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAED 150

Query: 243 -----AARQSGSGIS--------WLLPFVDGHPPLGWHDTAAYLVLPVLLVVS------Q 283
                 AR  G+ +S         L  FVD             + +P++++         
Sbjct: 151 VQSFLDARLFGAPLSAYITMPRSGLDAFVDFTRT-----NIILVGVPLMIIAGVATHFNS 205

Query: 284 YASMELMKPPQTDDP--AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV 341
            AS+         +P  A  N L ++   PL +      +P  + +YW +NN+ +  QQ 
Sbjct: 206 RASVARQSAEAAANPQTAMMNKLALW-VFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQH 264

Query: 342 WL 343
           ++
Sbjct: 265 YV 266

Length = 304

>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional

 Score = 84.3 bits (209), Expect = 5e-18
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 16/120 (13%)

Query: 105 GFISEAMEFVLKILKD---GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GFIS  +  +L IL D   GI    VP SYG AI+ LT++++ A +PL+   + +   M+
Sbjct: 6   GFISNNV--MLPIL-DFFYGI----VP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMK 57

Query: 162 NLQP----KIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             QP    +   IQ+RY  + ++ Q E  +L ++ G NPLAGCLP L  +P+   L+  L
Sbjct: 58  IAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATL 116

Length = 375

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 37/241 (15%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN------QERIQL 183
           ++  ++  L + V+    P T +Q +S     +++PK KA+++ Y G       +E  Q 
Sbjct: 31  AWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASIRELQQK 90

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTT 241
           +   L ++ G NPLAGC+P L  IPV++GLYQ L  +A    GL       I  L+    
Sbjct: 91  Q-KDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEV 149

Query: 242 ---IAARQSGSGISWLLPFVDGHPP-----LGW-HDTAAYLVLPVLLVVSQYA----SME 288
              +  R         LP     P      LG    T    VLP+ +  + +     +M 
Sbjct: 150 ESFLQGRVFNVP----LPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMS 205

Query: 289 LMKPPQTDDPAQKNTLLVFKFL----------PLMIGYFSLSVPSGLSIYWFTNNVLSTA 338
             +  QT+D      + + KFL          PL +G      P+ +++YW  NN+ +  
Sbjct: 206 TYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGLTG-PFPTAIALYWVANNLWTLI 264

Query: 339 Q 339
           Q
Sbjct: 265 Q 265

Length = 429

>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 61/252 (24%), Positives = 100/252 (39%), Gaps = 53/252 (21%)

Query: 102 GW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQV-ESTL- 158
           G+ + F+   M + +        A ++   +G AII++T+IV++   PL   Q  ++T  
Sbjct: 35  GFIWNFLGAPMSYFIDYF-----ANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQ 89

Query: 159 --AMQNLQPKIKAIQQRY--AGNQER---IQLETSRLYRQAGVNPLA--GCLPTLATIPV 209
              M  L+P  + I +R   A  QE     Q E     R+ G++ L   GCLP L  +P 
Sbjct: 90  SEKMAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPF 149

Query: 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDT 269
           +  LY A      +G+ T  F  I                              LG    
Sbjct: 150 FSALYFAAQY--TKGVSTSTFLGI-----------------------------DLGSPSL 178

Query: 270 AAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYW 329
               ++ VL     + SM  +   Q +    K  + +   +P+M+  FS S P+G+ +YW
Sbjct: 179 VLTAIIGVLYFFQSWLSMMGVPEEQRE--QMKAMMYM---MPIMMVVFSFSSPAGVGLYW 233

Query: 330 FTNNVLSTAQQV 341
                 S  QQ+
Sbjct: 234 LVGGFFSIIQQL 245

Length = 307

>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 61/234 (26%)

Query: 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG------NQERIQLETS 186
            AII++ +I+++ +F +T K   +    + LQ K   I  +Y         ++R Q E  
Sbjct: 135 LAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQ 194

Query: 187 RLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQ 246
            LY++  ++P +  +    T+P++I +Y+ + +             +PS+    T     
Sbjct: 195 ELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQS-------------LPSIK--VTTWLGI 239

Query: 247 SGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ----------TD 296
             S  SW   F        W     YL + +++V  Q  S  L   PQ          T 
Sbjct: 240 DLSATSWQEIFAG-----NW----IYLPILIIVVPVQALSQLL---PQILNKKKNKERTL 287

Query: 297 DPAQKNTL-----------LVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 339
           +  +K  L           +VF F       F +   +G+ IYW    + +  Q
Sbjct: 288 NVKEKEALKKQNKTQNIISIVFIF-------FGVIFAAGVQIYWIIGGIWTILQ 334

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
PRK02654	375	putative inner membrane protein translocase compon	100.0
KOG1239	372	consensus Inner membrane protein translocase invol	99.9
KOG1239	372	consensus Inner membrane protein translocase invol	98.95
COG1422	201	Predicted membrane protein [Function unknown]	96.55
COG1422	201	Predicted membrane protein [Function unknown]	83.62
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	82.7

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=2.2e-52  Score=401.14  Aligned_cols=210  Identities=28%  Similarity=0.635  Sum_probs=188.1

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 016810           97 TQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG  176 (382)
Q Consensus        97 ~~~~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~  176 (382)
                      .+.+|.|+++|+.|++++++++|+.+   |  .+||+||+++|+++|++++|++++|+|+++||+++|||+++|||||++
T Consensus        30 ~~~~g~~~~~~~~p~~~~l~~i~~~~---g--~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~  104 (255)
T PRK02944         30 PKSTGFWNEYFVYPLSQLITYFANLF---G--SNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSS  104 (255)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHh---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcC
Confidence            35567788999999999999999875   3  469999999999999999999999999999999999999999999987


Q ss_pred             C----HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCcc
Q 016810          177 N----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGIS  252 (382)
Q Consensus       177 d----~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~gls  252 (382)
                      |    ++++++|+++||||||+||++||+|+|+|+|||+++|+++|++.+  +.+++|+|+ ||+.+|            
T Consensus       105 ~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~D------------  169 (255)
T PRK02944        105 KDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQAD------------  169 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcch------------
Confidence            3    567899999999999999999999999999999999999998754  778999999 999876            


Q ss_pred             ccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHh
Q 016810          253 WLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTN  332 (382)
Q Consensus       253 wl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitS  332 (382)
                                        ||++||++++++++++.++......  ..+.+++.|++++|+++++|+.++|+|+++||++|
T Consensus       170 ------------------p~~iLPil~~~~~~~~~~~~~~~~~--~~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s  229 (255)
T PRK02944        170 ------------------PYYILPIVAGITTFIQQKLMMAGTA--GQNPQMAMMLWLMPIMILIFAINFPAALSLYWVVG  229 (255)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              8999999999999999987543211  12335678899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhh
Q 016810          333 NVLSTAQQVWLRKL  346 (382)
Q Consensus       333 nl~siiQ~~ilr~~  346 (382)
                      |+++++|++++++.
T Consensus       230 ~~~~i~Q~~~l~~~  243 (255)
T PRK02944        230 NIFMIAQTYLIKGP  243 (255)
T ss_pred             HHHHHHHHHHHcCc
Confidence            99999999999873

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=7.8e-52  Score=390.33  Aligned_cols=213  Identities=31%  Similarity=0.596  Sum_probs=189.9

Q ss_pred             hHHHHHHHHHHHHHHHhhccccC--CCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHHHH
Q 016810          104 FGFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERI  181 (382)
Q Consensus       104 ~~~i~~pl~~vL~~l~~~l~~~g--lp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~ek~  181 (382)
                      ++++.++++.+++++|+.++.++  .+++||+||+++|+++|++++|++++|+|+++||+++|||+++||+|||+|++++
T Consensus         2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~   81 (223)
T PRK00145          2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL   81 (223)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence            45677778888888888765431  2457999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCccccccccCCC
Q 016810          182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGH  261 (382)
Q Consensus       182 q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~glswl~p~~~g~  261 (382)
                      ++|++++|||||+||++||+|+++|+|||+++|+++|++.+  +.+++|+|++||+.+|                     
T Consensus        82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~~--~~~~~flW~~dLt~~D---------------------  138 (223)
T PRK00145         82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTG--INGVSFLWIKDLAKPD---------------------  138 (223)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCccChhhccCcc---------------------
Confidence            99999999999999999999999999999999999999864  7889999999999887                     


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHH
Q 016810          262 PPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV  341 (382)
Q Consensus       262 p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~siiQ~~  341 (382)
                               ||++||++++++++++++++.+..  ..+.+.++.|++++|+++++++.++|+|+++||++||+++++|++
T Consensus       139 ---------p~~iLPil~~~~~~l~~~~~~~~~--~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~  207 (223)
T PRK00145        139 ---------ITWILPILSGATTYLSGYLMTKAD--SSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY  207 (223)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHcCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     789999999999999998865431  223345788899999999999999999999999999999999999


Q ss_pred             HHHhhCCCC
Q 016810          342 WLRKLGGAK  350 (382)
Q Consensus       342 ilr~~~~~~  350 (382)
                      ++|+....|
T Consensus       208 ~l~~~~~~~  216 (223)
T PRK00145        208 FIKKLELKK  216 (223)
T ss_pred             HHHhhcchh
Confidence            999865554

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.2e-51  Score=435.54  Aligned_cols=244  Identities=31%  Similarity=0.565  Sum_probs=201.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHH
Q 016810          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (382)
Q Consensus       100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~e  179 (382)
                      .+|||++|+.|+.+++.++.+.++.+  ..+||+|||++|++||++++|++++|+++++||+++||||++||||||+|++
T Consensus       547 ~~GWf~fI~~Pia~~L~~ll~~fh~l--~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q  624 (795)
T PRK01001        547 FRGFFSFITEPFAALLFIIMKFFKFL--TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK  624 (795)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence            46999999999876665544443322  2379999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccc--cccCCCCchhhhhhccCCCccccccc
Q 016810          180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLPF  257 (382)
Q Consensus       180 k~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gfl--W~~dLs~pd~i~~~~~g~glswl~p~  257 (382)
                      |+|+|+|+|||||||||++||+|+|+|+||||++|++++++.+  +...+|+  |++||+.+|++        ++|..|+
T Consensus       625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie--LRgasFLpgWI~DLSapDpl--------f~~~~~i  694 (795)
T PRK01001        625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL--LRGASFIPGWIDNLTAPDVL--------FSWETPI  694 (795)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH--hcCCchhhhhHhhccCCCcc--------ccccccc
Confidence            9999999999999999999999999999999999999998754  6678887  99999999953        2233222


Q ss_pred             cCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHH
Q 016810          258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVL  335 (382)
Q Consensus       258 ~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~--~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~  335 (382)
                              |...+++.+||++++++++++++++....  ..++.+++++.|+++||+|+++++.++|+||++||++||++
T Consensus       695 --------~FiGd~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~  766 (795)
T PRK01001        695 --------WFIGNEFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLL  766 (795)
T ss_pred             --------cccccchhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                    11113688999999999999999864321  11233445567778999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCcccccchhhhhhhhhcc
Q 016810          336 STAQQVWLRKLGGAKPVVTENASEIITAGRAKR  368 (382)
Q Consensus       336 siiQ~~ilr~~~~~~~~~~~~~~~~~~~~~~~~  368 (382)
                      +++|+++++|.+..+..     +.++.++|.|+
T Consensus       767 SI~QQ~iI~k~~~~kKi-----~a~ie~nkkk~  794 (795)
T PRK01001        767 GVIQQWVTNKILDSKHL-----KNEVVPNKKKH  794 (795)
T ss_pred             HHHHHHHHHhhcchhHH-----HHHHHhhhhcc
Confidence            99999999996554432     46677777665

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=2e-50  Score=420.36  Aligned_cols=209  Identities=38%  Similarity=0.751  Sum_probs=190.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHH
Q 016810          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (382)
Q Consensus       100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~e  179 (382)
                      ++||+.+|++|+.++|+++|..+   |   +||+||+++|+++|++++|++++|+|+++||+++||||++||||||+|++
T Consensus       298 ~~G~~~~~~~pl~~~L~~i~~~~---g---~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~  371 (521)
T PRK01318        298 DYGWLWFITKPLFWLLDFLHSFV---G---NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ  371 (521)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhc---c---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence            58999999999999999999864   2   79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCchhhhhhccCCCcccccccc
Q 016810          180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPFV  258 (382)
Q Consensus       180 k~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gfl-W~~dLs~pd~i~~~~~g~glswl~p~~  258 (382)
                      ++|+|+++|||||||||++||+|+|+|+||||++|++++++.+  +.+++|+ |++||+.+|                  
T Consensus       372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------  431 (521)
T PRK01318        372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------  431 (521)
T ss_pred             HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence            9999999999999999999999999999999999999998764  7788998 999999987                  


Q ss_pred             CCCCCCCcchhhHHHHH-----HHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhh
Q 016810          259 DGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN  333 (382)
Q Consensus       259 ~g~p~~gw~d~~py~IL-----PIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSn  333 (382)
                                  ||++|     |++++++++++++++..+  .++.|   ++++++||+++++|+.++||||++||++||
T Consensus       432 ------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~~~~~~~~~PagL~lYW~~sn  494 (521)
T PRK01318        432 ------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVNN  494 (521)
T ss_pred             ------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        56677     999999999999987543  25543   345667999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCC
Q 016810          334 VLSTAQQVWLRKLGGAKP  351 (382)
Q Consensus       334 l~siiQ~~ilr~~~~~~~  351 (382)
                      +++++|++++++..+.+.
T Consensus       495 ~~si~Q~~~l~~~~~~~~  512 (521)
T PRK01318        495 LLTIIQQYLINRRLEKKK  512 (521)
T ss_pred             HHHHHHHHHHhhhcccch
Confidence            999999999999776553

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=6.9e-50  Score=384.08  Aligned_cols=211  Identities=27%  Similarity=0.524  Sum_probs=187.0

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHhhcHHHHHHHHH
Q 016810           98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR  173 (382)
Q Consensus        98 ~~~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs----~~km~~lqPel~~Iqek  173 (382)
                      +.+|+|++++++|++++++++|+.+   |  .+||+||+++|+++|++++|++++|+|+    ++||+++|||+++||||
T Consensus        32 ~~~~~~~~~~~~p~~~ll~~l~~~~---~--~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k  106 (256)
T PRK01622         32 HSDGFFDHYFVYPFSFLIQFVAHHI---G--GSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK  106 (256)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHh---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence            4567778999999999999999875   3  4699999999999999999999999999    89999999999999999


Q ss_pred             hhh--CHH---HHHHHHHHHHHHcCCCCCc-CchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhcc
Q 016810          174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS  247 (382)
Q Consensus       174 yk~--d~e---k~q~E~~~LyKe~gvnPl~-gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~  247 (382)
                      ||+  |++   ++++|++++|||||+||++ ||+|+|+|+|||+++|+++|++.  ++.++||+|+ ||+.+|       
T Consensus       107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D-------  176 (256)
T PRK01622        107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD-------  176 (256)
T ss_pred             HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence            987  543   5789999999999999999 99999999999999999999975  4889999999 898764       


Q ss_pred             CCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHH
Q 016810          248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI  327 (382)
Q Consensus       248 g~glswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~L  327 (382)
                                               ++||++++++++++++++++.....++++.+|.|++++|+++++++.++|+|+++
T Consensus       177 -------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~l  231 (256)
T PRK01622        177 -------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVL  231 (256)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     5899999999999999876432222334456788899999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHhhCC
Q 016810          328 YWFTNNVLSTAQQVWLRKLGG  348 (382)
Q Consensus       328 YWitSnl~siiQ~~ilr~~~~  348 (382)
                      ||++||+++++|++++|+.+.
T Consensus       232 YW~~snl~si~Q~~~l~~~~~  252 (256)
T PRK01622        232 YWITGGLFLMGQTIVLRKVME  252 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999743

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=3.6e-49  Score=360.86  Aligned_cols=181  Identities=40%  Similarity=0.772  Sum_probs=168.5

Q ss_pred             chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHH
Q 016810          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (382)
Q Consensus       130 swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPI  209 (382)
                      |||++|+++|+++|++++|++++|+|+++||+++|||++++|||||+|++++++|++++|||||+||++||+|+++|+||
T Consensus         1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi   80 (181)
T TIGR03592         1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI   80 (181)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHh
Q 016810          210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL  289 (382)
Q Consensus       210 fi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~glswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l  289 (382)
                      |+++|+++|++.  ++.++||+|++||+.+|                              ||++||+++++++++++++
T Consensus        81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~  128 (181)
T TIGR03592        81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL  128 (181)
T ss_pred             HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence            999999999975  48899999999999886                              8999999999999999998


Q ss_pred             cCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHh
Q 016810          290 MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK  345 (382)
Q Consensus       290 ~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~siiQ~~ilr~  345 (382)
                      +.+..+ +  .+.+|.|++++|+++++++.++|+|+++||++||+++++|++++|+
T Consensus       129 ~~~~~~-~--~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~  181 (181)
T TIGR03592       129 SPSGPP-D--PAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR  181 (181)
T ss_pred             cCCCCC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            654322 2  2356778899999999999999999999999999999999999885

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=1.6e-48  Score=382.88  Aligned_cols=208  Identities=27%  Similarity=0.489  Sum_probs=181.4

Q ss_pred             CCc-hHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHhhcHHHHHHHHHhh
Q 016810          101 GGW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRYA  175 (382)
Q Consensus       101 ~gw-~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs----~~km~~lqPel~~Iqekyk  175 (382)
                      +|| ++++++|++.+++++|+.+   |  .+||+||+++|++||++++|++++|+++    ++||+++|||+++||||||
T Consensus        34 ~g~~~~~l~~p~~~~l~~i~~~~---g--~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk  108 (307)
T PRK02463         34 TGFIWNFLGAPMSYFIDYFANNL---G--LGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLK  108 (307)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHc---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHh
Confidence            565 5899999999999999864   4  4699999999999999999999988865    7899999999999999998


Q ss_pred             h--CH---HHHHHHHHHHHHHcCCCCCc--CchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccC
Q 016810          176 G--NQ---ERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSG  248 (382)
Q Consensus       176 ~--d~---ek~q~E~~~LyKe~gvnPl~--gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g  248 (382)
                      +  |+   +++|+|++++|||||+||++  ||+|+|+|+|||+++|+++++.  +++.+++|+|+ ||+.|         
T Consensus       109 ~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p---------  176 (307)
T PRK02463        109 NATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSP---------  176 (307)
T ss_pred             cCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCch---------
Confidence            6  22   35689999999999999998  8999999999999999999975  46889999999 88754         


Q ss_pred             CCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 016810          249 SGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIY  328 (382)
Q Consensus       249 ~glswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LY  328 (382)
                                             +++||++++++++++.+++..... +++.+.||.|+++||+|+++|+.++|+||++|
T Consensus       177 -----------------------~~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~Pim~~~~~~~~PagL~lY  232 (307)
T PRK02463        177 -----------------------SLVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMPIMMVVFSFSSPAGVGLY  232 (307)
T ss_pred             -----------------------hHHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   468999999999999987644322 33445678899999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHhhCCC
Q 016810          329 WFTNNVLSTAQQVWLRKLGGA  349 (382)
Q Consensus       329 WitSnl~siiQ~~ilr~~~~~  349 (382)
                      |++||+|+++|++++++...+
T Consensus       233 W~~snlfsi~Q~~i~~~~~~p  253 (307)
T PRK02463        233 WLVGGFFSIIQQLITTYILKP  253 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHhhH
Confidence            999999999999999866553

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=4.6e-48  Score=382.14  Aligned_cols=247  Identities=26%  Similarity=0.442  Sum_probs=186.3

Q ss_pred             CCchHHHHHHHHHHH----HHHHhhcccc-C--CCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHH
Q 016810          101 GGWFGFISEAMEFVL----KILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR  173 (382)
Q Consensus       101 ~gw~~~i~~pl~~vL----~~l~~~l~~~-g--lp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqek  173 (382)
                      ++||++|++|++|++    .++|..+..+ |  .+++||+||+++|+++|++++|++++|+|+++||+++|||+++||+|
T Consensus         5 ~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~k   84 (329)
T PRK01315          5 ADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEK   84 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            578999999988877    5557655433 2  13479999999999999999999999999999999999999999999


Q ss_pred             hhhCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCcc-
Q 016810          174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGIS-  252 (382)
Q Consensus       174 yk~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~gls-  252 (382)
                      ||+|++++++|+++|||||||||+++|+|+|+|+|||+++|+++|++++. . ..-.+|.+++... ...+...|..++ 
T Consensus        85 yk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~-~-~~~~~~~~~~~~s-~~~~~~fg~~L~~  161 (329)
T PRK01315         85 YKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASR-G-DGIGPINPPLLES-FRHAHIFGAPLAA  161 (329)
T ss_pred             HHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccccchhhhHHHh-hhccccccccccc
Confidence            99999999999999999999999999999999999999999999987642 1 1112233222210 000111122111 


Q ss_pred             ccc-cccCCCCCCCcch-hhHHHHHHHHHHHHHHHHHHh-cC----CCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHh
Q 016810          253 WLL-PFVDGHPPLGWHD-TAAYLVLPVLLVVSQYASMEL-MK----PPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGL  325 (382)
Q Consensus       253 wl~-p~~~g~p~~gw~d-~~py~ILPIL~~~s~~ls~~l-~~----~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL  325 (382)
                      +.+ ++.     .|+.+ .+.+++||+++++++|++++. +.    +...++++.+++|.|+++||+|+++++.++|+||
T Consensus       162 ~f~~~~~-----~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL  236 (329)
T PRK01315        162 TFLQALN-----AGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGV  236 (329)
T ss_pred             ccccccc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110 111     12212 256789999999999988753 22    1122355556788899999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhCCCCCcccc
Q 016810          326 SIYWFTNNVLSTAQQVWLRKLGGAKPVVTE  355 (382)
Q Consensus       326 ~LYWitSnl~siiQ~~ilr~~~~~~~~~~~  355 (382)
                      ++||++||+|+++|+++++|.++.++...+
T Consensus       237 ~LYW~~snl~si~Qq~~v~r~~p~p~s~a~  266 (329)
T PRK01315        237 LFYWLTSNVWTMGQQFYVIRNNPTPGSPAA  266 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence            999999999999999998887765544443

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=6.1e-48  Score=355.33  Aligned_cols=193  Identities=39%  Similarity=0.730  Sum_probs=176.6

Q ss_pred             chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHH
Q 016810          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (382)
Q Consensus       130 swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPI  209 (382)
                      |||++|+++|+++|++++|++++|+|+++||+++|||+++|||||++|++++++|++++|||||+||+++|+|+++|+||
T Consensus         2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi   81 (198)
T PF02096_consen    2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI   81 (198)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh-hccccCccccccCCCCchhhhhhccCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 016810          210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASME  288 (382)
Q Consensus       210 fi~ly~aLr~m~~-~~l~~~gflW~~dLs~pd~i~~~~~g~glswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~  288 (382)
                      |+++|+++|++++ +++.++||+|++||+.+|+.                         ...||++||++++++++++++
T Consensus        82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~~  136 (198)
T PF02096_consen   82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQE  136 (198)
T ss_pred             HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHHH
Confidence            9999999999986 67889999999999999831                         123899999999999999999


Q ss_pred             hcCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHhhC
Q 016810          289 LMKP--PQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG  347 (382)
Q Consensus       289 l~~~--~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~siiQ~~ilr~~~  347 (382)
                      +..+  ....+..++.+|.|.+++|+++++++.++|+|+.+||++||+++++|++++|+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~  197 (198)
T PF02096_consen  137 LSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF  197 (198)
T ss_pred             HHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            8643  2222445567788999999999999999999999999999999999999999865

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=3e-47  Score=373.06  Aligned_cols=232  Identities=24%  Similarity=0.415  Sum_probs=179.6

Q ss_pred             chHHHHHHHHHHHHHHHhhcccc-C--CCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHH
Q 016810          103 WFGFISEAMEFVLKILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (382)
Q Consensus       103 w~~~i~~pl~~vL~~l~~~l~~~-g--lp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~e  179 (382)
                      +++++.+|+++++.++|+.+..+ |  .+.+||+||+++|+++|++++|++++|+|+++||+++|||+++|||||++|++
T Consensus         1 ml~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~   80 (304)
T PRK03449          1 MLDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQ   80 (304)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHH
Confidence            35778999999999999976432 2  23469999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhh--cccc---------------------CccccccCC
Q 016810          180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT---------------------EGFFWIPSL  236 (382)
Q Consensus       180 k~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~--~l~~---------------------~gflW~~dL  236 (382)
                      ++++|+++|||||||||++||+|+|+|+|||+++|+++|++...  +..+                     ++|+|.+  
T Consensus        81 ~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~--  158 (304)
T PRK03449         81 KMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR--  158 (304)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh--
Confidence            99999999999999999999999999999999999999998542  1111                     1233221  


Q ss_pred             CCchhhhhhccCCCcc-ccc-------cccCCCCCCCcchh-hHHHHHHHHHHHHHHHHHHhcCCC----CCCCHHhH-H
Q 016810          237 SGPTTIAARQSGSGIS-WLL-------PFVDGHPPLGWHDT-AAYLVLPVLLVVSQYASMELMKPP----QTDDPAQK-N  302 (382)
Q Consensus       237 s~pd~i~~~~~g~gls-wl~-------p~~~g~p~~gw~d~-~py~ILPIL~~~s~~ls~~l~~~~----~~~~~~qk-~  302 (382)
                               ..|.+++ |+.       ++.+.    +-.|. +.++++|+++++++|++++++...    +..++++. +
T Consensus       159 ---------~~g~pL~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m  225 (304)
T PRK03449        159 ---------LFGAPLSAYITMPRSGLDAFVDF----TRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMM  225 (304)
T ss_pred             ---------hcCCChHhhhcccchhhchhccc----ccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHH
Confidence                     2222221 211       01010    10111 245678999999999998875321    11233333 3


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHhhCCC
Q 016810          303 TLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA  349 (382)
Q Consensus       303 ~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~siiQ~~ilr~~~~~  349 (382)
                      +|.|+++||+|+++++.++|+|+.|||++||+|+++||+++++..+.
T Consensus       226 ~k~M~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~~~~  272 (304)
T PRK03449        226 NKLALWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKIDK  272 (304)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            47888999999999999999999999999999999999999875444

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=3.1e-47  Score=379.40  Aligned_cols=222  Identities=19%  Similarity=0.369  Sum_probs=184.1

Q ss_pred             CCC-chHHHHHHHHHHHHHHH--hhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 016810          100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG  176 (382)
Q Consensus       100 ~~g-w~~~i~~pl~~vL~~l~--~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~  176 (382)
                      ++| |+++|++|++++++++|  +.+. ...+++||+||+++|+++|++++|++++|+++++||+++|||+++||+|||+
T Consensus       100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~  178 (357)
T PRK02201        100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD  178 (357)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            345 77999999999999996  2221 1234679999999999999999999999999999999999999999999997


Q ss_pred             C------HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCC
Q 016810          177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG  250 (382)
Q Consensus       177 d------~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~g  250 (382)
                      |      ++++|+|+++||||||+||++||+|+|+|+|||+++|+++|++.+  +...+|+|+ ||+.+|..        
T Consensus       179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flgi-dLs~~~~~--------  247 (357)
T PRK02201        179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLGI-DLSATSWQ--------  247 (357)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCccc-ccCCCChh--------
Confidence            6      678999999999999999999999999999999999999998754  778899999 89987621        


Q ss_pred             ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcC----CC---CC----CCHHhHHHHHHHHHHHHHHHHHhh
Q 016810          251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----PP---QT----DDPAQKNTLLVFKFLPLMIGYFSL  319 (382)
Q Consensus       251 lswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~----~~---~~----~~~~qk~~k~m~~~mPlmi~~f~~  319 (382)
                        .++           .+..+|+++++++++++++++.+++    +.   ..    +.++.+.+++|+++||+++++++.
T Consensus       248 --~~~-----------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~  314 (357)
T PRK02201        248 --EIF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGV  314 (357)
T ss_pred             --hhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence              011           1122677888888888887776532    10   01    112334567899999999999999


Q ss_pred             hhhhHhHHHHHHhhHHHHHHHHHHHhh
Q 016810          320 SVPSGLSIYWFTNNVLSTAQQVWLRKL  346 (382)
Q Consensus       320 ~~PagL~LYWitSnl~siiQ~~ilr~~  346 (382)
                      ++|+||.|||++||+|+++|++++++.
T Consensus       315 ~~PaGL~LYW~~snl~tI~Qq~~i~~~  341 (357)
T PRK02201        315 IFAAGVQIYWIIGGIWTILQTLGIHYF  341 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999986

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.7e-46  Score=370.04  Aligned_cols=215  Identities=35%  Similarity=0.635  Sum_probs=189.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhh-hCH
Q 016810          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GNQ  178 (382)
Q Consensus       100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk-~d~  178 (382)
                      +.|||.++..++...++++|...   |.  +||++|+++|++||++++|++.+|.++++||+++|||+++|||||| +|+
T Consensus        84 ~~~~f~~~~~~~~~~~~~~~~~~---g~--n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~  158 (314)
T COG0706          84 DYGWFWNILAPLFPLLLFIDSFS---GL--NWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK  158 (314)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhc---Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence            57899888888888898886543   33  7999999999999999999999999999999999999999999999 899


Q ss_pred             HHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCchhhhhhccCCCccccccc
Q 016810          179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF  257 (382)
Q Consensus       179 ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gfl-W~~dLs~pd~i~~~~~g~glswl~p~  257 (382)
                      +++|+|+++|||||||||++||+|+++|+|||+++|+++++..+  +..++|+ |+.||+.+|+                
T Consensus       159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~dp----------------  220 (314)
T COG0706         159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPDP----------------  220 (314)
T ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCCC----------------
Confidence            99999999999999999999999999999999999999998754  6677777 9999998772                


Q ss_pred             cCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHH
Q 016810          258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLST  337 (382)
Q Consensus       258 ~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~si  337 (382)
                                  +..+++|+++++++|++++++....+ +++.+++++|+++||+++.+++.++|+||.+||++||+|++
T Consensus       221 ------------~~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi  287 (314)
T COG0706         221 ------------DYILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSI  287 (314)
T ss_pred             ------------chhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Confidence                        02236699999999999998765422 33344677899999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q 016810          338 AQQVWLRKLGGAK  350 (382)
Q Consensus       338 iQ~~ilr~~~~~~  350 (382)
                      +||+++++....+
T Consensus       288 ~Qq~ii~~~~~~~  300 (314)
T COG0706         288 LQQYILNKPLEKK  300 (314)
T ss_pred             HHHHHHhhhhhhh
Confidence            9999999976655

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=1e-43  Score=360.61  Aligned_cols=256  Identities=23%  Similarity=0.362  Sum_probs=187.6

Q ss_pred             hHHHHHHHHHHHHHHHhhccc-cCC--CcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhC---
Q 016810          104 FGFISEAMEFVLKILKDGIDA-VHV--PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN---  177 (382)
Q Consensus       104 ~~~i~~pl~~vL~~l~~~l~~-~gl--p~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d---  177 (382)
                      +++|++|++++|+++|..++. +|+  +++||++|+++|++||++++|++++|+++++||+.+||++++||+|||++   
T Consensus         2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~   81 (429)
T PRK00247          2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE   81 (429)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence            678999999999999998873 554  34599999999999999999999999999999999999999999999973   


Q ss_pred             --HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCchh---hhhhccCCC
Q 016810          178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTT---IAARQSGSG  250 (382)
Q Consensus       178 --~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~--~~l~~~gflW~~dLs~pd~---i~~~~~g~g  250 (382)
                        ++++++|+++|||||||||++||+|+|+|+|||+++|++||+|+.  +|+.+..+.|+--|+.+|.   +.++.+|.+
T Consensus        82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp  161 (429)
T PRK00247         82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP  161 (429)
T ss_pred             HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence              356889999999999999999999999999999999999999975  4555444445555555442   223344444


Q ss_pred             ccccccccCCC--CCCCc-chhhHHHHHHHHH--HHHHHHHHHhcCCC-----CCCCH----HhHHHHHHHHHHHHHHHH
Q 016810          251 ISWLLPFVDGH--PPLGW-HDTAAYLVLPVLL--VVSQYASMELMKPP-----QTDDP----AQKNTLLVFKFLPLMIGY  316 (382)
Q Consensus       251 lswl~p~~~g~--p~~gw-~d~~py~ILPIL~--~~s~~ls~~l~~~~-----~~~~~----~qk~~k~m~~~mPlmi~~  316 (382)
                      ++-.+ .+..+  -..|+ ...+.+++||+++  ++.+++++.++...     ...++    +++.|+.|++++|+|+++
T Consensus       162 L~~~~-sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~  240 (429)
T PRK00247        162 LPAYV-SMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS  240 (429)
T ss_pred             ccccc-ccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence            33110 00000  00011 0113467888544  44455776653221     11122    344456677889999988


Q ss_pred             Hhhh--hhhHhHHHHHHhhHHHHHHHH----HHHhhCCCCCcccccchhh
Q 016810          317 FSLS--VPSGLSIYWFTNNVLSTAQQV----WLRKLGGAKPVVTENASEI  360 (382)
Q Consensus       317 f~~~--~PagL~LYWitSnl~siiQ~~----ilr~~~~~~~~~~~~~~~~  360 (382)
                      ++++  +|+||.|||++||+|+++||+    ++++.++..+.+.|-....
T Consensus       241 ~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~~~~~~  290 (429)
T PRK00247        241 LGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKEHHAEQ  290 (429)
T ss_pred             HHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence            7765  799999999999999999999    6788888877666544433

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=6.7e-37  Score=299.64  Aligned_cols=114  Identities=32%  Similarity=0.595  Sum_probs=105.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHH----HHHHHhh
Q 016810          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA  175 (382)
Q Consensus       100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~----~Iqekyk  175 (382)
                      +.||.-+..+++..+++++|..+     + +||+||+++|++||++++|++++|+|+++||+.+||||+    +||||||
T Consensus         2 dfG~g~i~~~il~~iL~f~y~~v-----g-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK   75 (375)
T PRK02654          2 DFGIGFISNNVMLPILDFFYGIV-----P-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK   75 (375)
T ss_pred             CcchHHHHHhHHHHHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence            46886666688999999999753     2 799999999999999999999999999999999999985    7999999


Q ss_pred             hCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhh
Q 016810          176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV  220 (382)
Q Consensus       176 ~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m  220 (382)
                      +|++++++|+++|||||| ||++||+|+|+|+|||+++|+++|..
T Consensus        76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~s  119 (375)
T PRK02654         76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGS  119 (375)
T ss_pred             CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999 99999999999999999999999973

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.1e-23  Score=208.94  Aligned_cols=214  Identities=21%  Similarity=0.350  Sum_probs=178.4

Q ss_pred             cCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh--
Q 016810           99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG--  176 (382)
Q Consensus        99 ~~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~--  176 (382)
                      ...+|..  +.-++..|+.+|...   |+|  ||.+|+..|+.+|.+++|+.++++|+..|+.++.||+.++.++.+.  
T Consensus        77 ~~~~~~p--~~~lq~~l~~~h~~~---g~p--ww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~  149 (372)
T KOG1239|consen   77 ALSSWRP--VATLQNELERLHVYS---GLP--WWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAA  149 (372)
T ss_pred             HhcccCc--hhHHHHHHHHHHHHh---CCc--chHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhh
Confidence            3455555  445778888898875   565  8999999999999999999999999999999999999999998865  


Q ss_pred             -C---HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCchhhhhhccCCC
Q 016810          177 -N---QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSG  250 (382)
Q Consensus       177 -d---~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~--~~l~~~gflW~~dLs~pd~i~~~~~g~g  250 (382)
                       |   ....++|+++++|+||++| +....+++|.|+|++.|.+||.|+.  +++.+++++|++||+.+|          
T Consensus       150 ~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d----------  218 (372)
T KOG1239|consen  150 QDNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD----------  218 (372)
T ss_pred             ccccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC----------
Confidence             1   2356678999999999999 9998899999999999999999985  467788999999999886          


Q ss_pred             ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHH
Q 016810          251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYW  329 (382)
Q Consensus       251 lswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~-~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYW  329 (382)
                                          ||+++|+++.+++...+++...... .+.....|+.+.+++|+.+..++.++|++++.||
T Consensus       219 --------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~yw  278 (372)
T KOG1239|consen  219 --------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYW  278 (372)
T ss_pred             --------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhh
Confidence                                7899999999999999887543221 1223345778899999999999999999999999


Q ss_pred             HHhhHHHHHHHHH----HHhhCCCCCccc
Q 016810          330 FTNNVLSTAQQVW----LRKLGGAKPVVT  354 (382)
Q Consensus       330 itSnl~siiQ~~i----lr~~~~~~~~~~  354 (382)
                      +    ++++|..+    .|...+..++..
T Consensus       279 l----~s~~~~~vlr~~vr~~l~~~~~~~  303 (372)
T KOG1239|consen  279 L----FSLVQGLVLRSEVRKKLGIPDVPS  303 (372)
T ss_pred             h----hHHHHHHHhHHHHHHhcCCCCCCC
Confidence            9    99999998    455566655555

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=5.1e-10  Score=113.51  Aligned_cols=248  Identities=24%  Similarity=0.230  Sum_probs=209.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHH
Q 016810          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (382)
Q Consensus       100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~e  179 (382)
                      .+.|+..+....+..+..++.....++.++.++.++...|+++++...|+...+..+..-++..+|....+...+...+.
T Consensus         4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p   83 (372)
T KOG1239|consen    4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP   83 (372)
T ss_pred             cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence            57899989999999999999888888888889999999999999999999988888999999999999998888888655


Q ss_pred             --HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCccccccc
Q 016810          180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF  257 (382)
Q Consensus       180 --k~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~glswl~p~  257 (382)
                        .+|.++.++|+-.|++.|++|+...+-++..+..|.+.+. .++...+.++.|++.+...-..++.+.+.++.|..+.
T Consensus        84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~  162 (372)
T KOG1239|consen   84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ  162 (372)
T ss_pred             hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence              8999999999999999999999999999999999999986 5555668889999998887777777777888999888


Q ss_pred             cCCCCCCCcc-hhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHH
Q 016810          258 VDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS  336 (382)
Q Consensus       258 ~~g~p~~gw~-d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~s  336 (382)
                      .+.+.+.||. +...+.+++..+.++.|+.++.|..+....+.+     ....+|-+..+.-...+.++..||+.+++..
T Consensus       163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~  237 (372)
T KOG1239|consen  163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPDPLYILPGITLATLTLFIEL  237 (372)
T ss_pred             HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence            8888888887 888889999999999999999877443212221     4456677777788889999999999999999


Q ss_pred             HHHHHHHH-hhCCCCCcc
Q 016810          337 TAQQVWLR-KLGGAKPVV  353 (382)
Q Consensus       337 iiQ~~ilr-~~~~~~~~~  353 (382)
                      -.|+.... +..++.+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~  255 (372)
T KOG1239|consen  238 GAETGLSSSKLLPAMKSF  255 (372)
T ss_pred             HHHhhhhcccccchhHHH
Confidence            99987776 455554333

>COG1422 Predicted membrane protein [Function unknown]

Probab=96.55  E-value=0.015  Score=54.61  Aligned_cols=90  Identities=16%  Similarity=0.205  Sum_probs=51.6

Q ss_pred             chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh-----CH---HHHHHHHHHHHHHcCCCCCc-Cc
Q 016810          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLA-GC  200 (382)
Q Consensus       130 swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~-----d~---ek~q~E~~~LyKe~gvnPl~-gc  200 (382)
                      +..++|++..+++=+.+ -+.-+-....+||+++|.++++.||++++     |.   +|+|+|+++...... ..++ .+
T Consensus        45 ~p~lvilV~avi~gl~~-~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~-elmk~qf  122 (201)
T COG1422          45 PPHLVILVAAVITGLYI-TILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQR-ELMKMQF  122 (201)
T ss_pred             ccHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence            34566776666655432 22223345688999999999999988864     43   244444433332221 1111 24


Q ss_pred             hHHHHHHHHHHHHHHHHHhhh
Q 016810          201 LPTLATIPVWIGLYQALSNVA  221 (382)
Q Consensus       201 lp~LiQiPIfi~ly~aLr~m~  221 (382)
                      -|++.+.++.|-+|.=++...
T Consensus       123 kPM~~~~v~tI~~F~Wl~~~~  143 (201)
T COG1422         123 KPMLYISVLTIPFFAWLRWFV  143 (201)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            477777777776666666543

>COG1422 Predicted membrane protein [Function unknown]

Probab=83.62  E-value=27  Score=33.09  Aligned_cols=86  Identities=16%  Similarity=0.227  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHH---HHHHHHHHhhcHHHHHHHH--------HhhhCHHHHHHHHHHHHHHcCCCCCcCch
Q 016810          133 FAIILLTVIVKVATFPLTKKQ---VESTLAMQNLQPKIKAIQQ--------RYAGNQERIQLETSRLYRQAGVNPLAGCL  201 (382)
Q Consensus       133 ~aIillTliVRlillPL~ikq---~rs~~km~~lqPel~~Iqe--------kyk~d~ek~q~E~~~LyKe~gvnPl~gcl  201 (382)
                      ++=+++++..-++- -+.+-+   .+-+..|++.|.|.+|.+|        |.++.|+++.+.+++++|.. .+|+  ..
T Consensus        52 V~avi~gl~~~i~~-~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q-fkPM--~~  127 (201)
T COG1422          52 VAAVITGLYITILQ-KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ-FKPM--LY  127 (201)
T ss_pred             HHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH--HH
Confidence            33333444444333 333444   3446677889999988876        33345667777778888776 2343  33


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q 016810          202 PTLATIPVWIGLYQALSNVAN  222 (382)
Q Consensus       202 p~LiQiPIfi~ly~aLr~m~~  222 (382)
                      -..+.||+|.=+++-+.....
T Consensus       128 ~~v~tI~~F~Wl~~~~~~~~~  148 (201)
T COG1422         128 ISVLTIPFFAWLRWFVGTGGY  148 (201)
T ss_pred             HHHHHHHHHHHHHHHHccCcc
Confidence            466799999999999987754

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=82.70  E-value=5.6  Score=35.85  Aligned_cols=44  Identities=11%  Similarity=0.184  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHhhcHHHHHHHHHh
Q 016810          131 YGFAIILLTVIVKVATFPLTKK-----QVESTLAMQNLQPKIKAIQQRY  174 (382)
Q Consensus       131 wg~aIillTliVRlillPL~ik-----q~rs~~km~~lqPel~~Iqeky  174 (382)
                      ..+.|+++.++.-++.-=+...     ..+.+.++++++-+.++++++.
T Consensus        15 ~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   63 (168)
T PF01956_consen   15 ITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNG   63 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcC
Confidence            3345555555444433322222     2344555555666666666543

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00